BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006580
         (640 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224082372|ref|XP_002306667.1| predicted protein [Populus trichocarpa]
 gi|222856116|gb|EEE93663.1| predicted protein [Populus trichocarpa]
          Length = 630

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/627 (62%), Positives = 485/627 (77%), Gaps = 1/627 (0%)

Query: 1   MSSYLKKAH-VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL 59
           M   +K+ H V++ SLSY S LID C S KS  FA+  H  L K+G N HT+LGNRCLDL
Sbjct: 1   MYPLIKQCHRVSRTSLSYYSYLIDHCFSLKSLSFARITHAQLIKVGLNRHTFLGNRCLDL 60

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           YS+FG  +D L++FD+I  KN +SWNICL+GLLK DNL  A  VFD++PE DVVSWNSMI
Sbjct: 61  YSQFGNVNDALKVFDDISSKNIVSWNICLKGLLKFDNLSLACSVFDDMPERDVVSWNSMI 120

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
           SGYAS GY D ALE F +MQ  GVRPS FT+SIL+S V    HGK+IHGS++RSGL   N
Sbjct: 121 SGYASRGYFDCALETFWEMQKLGVRPSEFTYSILMSVVFGVRHGKEIHGSIVRSGLGALN 180

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           VVLGNSLIDMYGK   L YA GVFL MEELD+ISWNSLIS C  SGY ELALD+F  MR 
Sbjct: 181 VVLGNSLIDMYGKFSSLDYALGVFLTMEELDVISWNSLISVCCQSGYPELALDKFCIMRS 240

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            GYSPDE+++S+VI +C  LRNL+KGKQ+FAL VKVGFL N+I+ SATIDLFSKCNRLED
Sbjct: 241 LGYSPDEFSVSVVITSCLNLRNLEKGKQIFALCVKVGFLCNTIISSATIDLFSKCNRLED 300

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           SVRLFE+ D+WD AV N MIS+Y R GF E  L LF L L++DIRPTEFTLS VL S  I
Sbjct: 301 SVRLFEEQDQWDSAVCNSMISSYARCGFREDGLRLFVLTLKKDIRPTEFTLSSVLHSTSI 360

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             +E G+QFHS+A+KSG + +A+VASSL+EMY+K G ID S +IF K+  RDL++WNT++
Sbjct: 361 LKLEQGTQFHSLAVKSGLELDAIVASSLVEMYSKFGFIDCSIKIFNKMVARDLIAWNTMI 420

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
           MGLT NGR  E L  F+EL+  GLPPDRITLA VLLAC++GGF+ +GM VFS+M+E YGV
Sbjct: 421 MGLTHNGRVFEALQTFKELIRTGLPPDRITLAGVLLACSFGGFISEGMTVFSSMEERYGV 480

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  EHYAC +DLLCQAG+L +A+ +  +MP++P   IWESIL A  I+GD+KL+E VAE
Sbjct: 481 KPSNEHYACFVDLLCQAGRLDEALYVAESMPYEPVSLIWESILHACLIHGDLKLSERVAE 540

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
           R+M+L+  S LPY +L + + +RG+WE +VRVKK M++  + KV GCSWIG+KN++YTF 
Sbjct: 541 RLMELEPQSSLPYLVLARMFEIRGQWEGVVRVKKAMKRGKVEKVIGCSWIGVKNQVYTFT 600

Query: 600 AGELQHHGGQKIYLVLRLLTWEMEDEG 626
           A +LQHH G++IYLVLRLL WE E +G
Sbjct: 601 ADQLQHHRGKEIYLVLRLLNWETEAKG 627


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/641 (58%), Positives = 485/641 (75%), Gaps = 2/641 (0%)

Query: 1   MSSYLKKAHVNKA-SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL 59
           M  +LKKAH   A SLSY S LI+ C   KS D+AK +H  L K+GFN HT+LGNRCLDL
Sbjct: 22  MQPFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDL 81

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           YS+ GT +D L++F++I  KN ISWNI L+  ++   L+ A  VFDE+P+ DVVSWN+MI
Sbjct: 82  YSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMI 141

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
           SGY S G  D A   FS+MQ  G+RPSGFT+S LLS VSSAC GKQIH SMIR+G+ LSN
Sbjct: 142 SGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSN 201

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           VV+GNSLI MYGK GV+ YAFGVF+ MEELDI SWNSLI  C  SGY  LAL QF  MR 
Sbjct: 202 VVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRS 261

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            GYSPD++T+S VI  C+ L++L+KG+Q+FAL ++VGFLSNSIV SA+IDLFSKCNRLED
Sbjct: 262 VGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLED 321

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           SVR+FE++ +WD  + N MIS+Y  +GFGE AL+LF L LRE++RPTEFTLS VLS++ I
Sbjct: 322 SVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSI 381

Query: 360 -PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
             PV+ GSQ HS+ +KSG +S+ +VASSL+EMYAK G IDS+ + F K+  RDL+SWNT+
Sbjct: 382 LLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTM 441

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           +MGL  NGR ++ L++F+ELL  G PPD ITLA VLLACN GG VD+G+ +FS+M++EYG
Sbjct: 442 IMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYG 501

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           V+P  EHYACI+D++ + G+L +A+DI   MP +P   IW S+L A  IYGD++ TE VA
Sbjct: 502 VIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVA 561

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           ER+M+L+  S LPY +L QAY MRGRWE++VRV++ M++ G+ KV GCSWIGIKN ++ F
Sbjct: 562 ERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWIGIKNHVFVF 621

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKLDVEG 639
              +L H GG+ IY +LRLL  E+ED+G    + DK+   G
Sbjct: 622 KENQLLHIGGKDIYFILRLLIQEIEDDGYASQQYDKVRAVG 662


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/600 (59%), Positives = 460/600 (76%), Gaps = 1/600 (0%)

Query: 41   LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
            L K+GFN HT+LGNRCLDLYS+ GT +D L++F++I  KN ISWNI L+  ++   L+ A
Sbjct: 736  LIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERA 795

Query: 101  LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
              VFDE+P+ DVVSWN+MISGY S G  D A   FS+MQ  G+RPSGFT+S LLS VSSA
Sbjct: 796  RDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSA 855

Query: 161  CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
            C GKQIH SMIR+G+ LSNVV+GNSLI MYGK GV+ YAFGVF+ MEELDIISWNSLI  
Sbjct: 856  CRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWS 915

Query: 221  CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
            C  SGY  LAL QF  MR  GYSPD++T+S VI  C+ L++L+KG+Q+FAL ++VGFLSN
Sbjct: 916  CGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSN 975

Query: 281  SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
            SIV SA+IDLFSKCNRLEDSVR+FE++ +WD  + N MIS+Y  +GFGE AL+LF L LR
Sbjct: 976  SIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLR 1035

Query: 341  EDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
            E++RPTEFTLS VLS++ I  PV+ GSQ HS+ +KSG +S+ +VASSL+EMYAK G IDS
Sbjct: 1036 ENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDS 1095

Query: 400  STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
            + + F K+  RDL+SWNT++MGL  NGR ++ L++F+ELL  G PPD ITLA VLLACN 
Sbjct: 1096 AMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNV 1155

Query: 460  GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            GG VD+G+ +FS+M++EYGV+P  EHYACI+D++ + G+L +A+DI   MP +P   IW 
Sbjct: 1156 GGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWG 1215

Query: 520  SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
            S+L A  IYGD++ TE VAER+M+L+  S LPY +L QAY MRGRWE++VRV + M++ G
Sbjct: 1216 SLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVXRAMKEKG 1275

Query: 580  INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKLDVEG 639
            + KV GCSWIGIKN ++ F   +L H GG+ IY +LRLL  E+ED+G    + DK+   G
Sbjct: 1276 VRKVIGCSWIGIKNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDGYASQQYDKVRAVG 1335



 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 219/715 (30%), Positives = 350/715 (48%), Gaps = 113/715 (15%)

Query: 25  CLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C ++ S    + +H    K G  ++   +GNR L +YSR  +  +  QLF+E+P++NC S
Sbjct: 16  CNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFS 75

Query: 84  WNICLRGLLKSD-------------------------------NLDTALKVFDEIPEPDV 112
           WN  + G LKS                                NL+ A ++F+E+P  + 
Sbjct: 76  WNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNG 135

Query: 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGV-RPSGFTFSILLSTVSSACH-------GK 164
           ++WNSMI GYA  G    A+ +F  + L  + R  G TF  +L+TV  AC        GK
Sbjct: 136 IAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTF--VLATVVGACTNLGALDCGK 193

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD-------------- 210
           QIH  ++   +   +V LG+SL+++YGK G +  A  V   M+E D              
Sbjct: 194 QIHARIVVDEVEFDSV-LGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASC 252

Query: 211 -----------------IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
                            ++ WNS+ISG   +     AL+ F +MR  G   D  T + V+
Sbjct: 253 GRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVL 312

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +AC+ L  +D+G QV A   KVGF ++ I+ SA +D++SKC R +D+ +LF  L  +D  
Sbjct: 313 SACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTI 372

Query: 314 VINVMISTY---GR-----------------------YGFGE-----VALELFQLMLRED 342
           ++N MI+ Y   GR                        GF +      AL+LF  M +  
Sbjct: 373 LLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG 432

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +R  +F+L+ V+S+   I  +E G Q  + A   G + + ++++SL++ Y K G ++   
Sbjct: 433 LRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGR 492

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           ++F ++ K D V WN+++MG   NG   E L+VF+++   G+ P  IT   VL AC++ G
Sbjct: 493 KLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCG 552

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            V++G   F AMK +Y + PG EHY+C++DL  +AG L  A+++   MP +   S+W S+
Sbjct: 553 LVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSV 612

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           LR    +G+  L + VA+R++DL   +   Y  L+  YA    W    +V+K+M    I 
Sbjct: 613 LRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIP 672

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKLD 636
           K T     G +      +  +      Q+  LVLRL+  +         ECD+ D
Sbjct: 673 KDTSFDIAGEEGXEGLSSETKEVTKMKQRQNLVLRLVAEKKR-------ECDERD 720



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 229/485 (47%), Gaps = 41/485 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  + D  K IH  +        + LG+  ++LY + G  D    + + + +
Sbjct: 177 ATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKE 236

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +  S +  + G      ++ A ++F       VV WNSMISGY +   +  ALE+F+ M
Sbjct: 237 PDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNM 296

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK--- 192
           + +GV+    TF+ +LS  S+      G Q+H  + + G + +++++ ++L+DMY K   
Sbjct: 297 RRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFT-NDIIIDSALVDMYSKCRR 355

Query: 193 ----------------------------LGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
                                        G +  A  +F  M    +ISWNS+I G   +
Sbjct: 356 PDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQN 415

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                ALD F  M   G   D+++++ VI+AC  + +L+ G+Q+FA +  +G   + I+ 
Sbjct: 416 ACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIIS 475

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           ++ +D + KC  +E   +LF+++ + D    N M+  Y   G G  AL +F  M    ++
Sbjct: 476 TSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQ 535

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           PT+ T   VLS+      VE G + F++M +    +      S ++++YA+ G ++ +  
Sbjct: 536 PTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMN 595

Query: 403 IFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           +  ++  K D   W++++ G   +G       V + +++  L P+  + A V L+  Y  
Sbjct: 596 LIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIID--LDPEN-SGAYVQLSGIYAT 652

Query: 462 FVDKG 466
           F D G
Sbjct: 653 FEDWG 657



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 126/577 (21%), Positives = 240/577 (41%), Gaps = 85/577 (14%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            +I  C S  S +  + I      +G      +    +D Y + G  +   +LFD + + +
Sbjct: 443  VISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSD 502

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFS 136
             + WN  L G   + +   AL VFD++     +P  +++  ++S    CG  +   + F 
Sbjct: 503  EVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFY 562

Query: 137  KMQLQ-GVRPSGFTFSILLSTVSSAC---------------HGKQIHGSMIRSGLSLSNV 180
             M+L   + P    +S ++   + A                    +  S++R  ++  N 
Sbjct: 563  AMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNN 622

Query: 181  VLGNS----LIDM-------YGKLGVLYYAFGVFLNMEELDIISWNSLI--SGCFNSGYG 227
            +LG      +ID+       Y +L  +Y  F  +    ++  + ++  I     F+   G
Sbjct: 623  ILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKDTSFDIA-G 681

Query: 228  ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS----------VKVGF 277
            E   +   S         +    ++     K R  D+  Q F  +          +KVGF
Sbjct: 682  EEGXEGLSSETKEVTKMKQRQNLVLRLVAEKKRECDERDQKFMAARRTLLEFDMLIKVGF 741

Query: 278  LSNSIVLSATIDLFSKCNRLEDSVRLFE-------------------------------Q 306
             +++ + +  +DL+S+     DS+R+FE                               +
Sbjct: 742  NTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDE 801

Query: 307  LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGS 366
            + + D    N MIS Y  +G  + A   F  M +  IRP+ FT S +LS   +     G 
Sbjct: 802  MPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSF--VSSACRGK 859

Query: 367  QFHSMAIKSGFD-SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  I++G D SN VV +SL+ MY K G +D +  +F+ +++ D++SWN+++    ++
Sbjct: 860  QIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKS 919

Query: 426  GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
            G     L  F  +   G  PD+ T++ V+  C+    ++KG  +F A+    G +     
Sbjct: 920  GYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIF-ALCIRVGFLSNSIV 978

Query: 486  YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             +  IDL  +  +L  ++ +   + +Q     W+S+L
Sbjct: 979  SSASIDLFSKCNRLEDSVRVFEEI-YQ-----WDSVL 1009



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 32   DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
            D    IH  + K G  +   + +  +++Y++FG  D  ++ F +I  ++ ISWN  + GL
Sbjct: 1059 DQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGL 1118

Query: 92   LKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPS 146
              +  +  AL++F E+    P PD ++   ++      G  D  L +FS M+ + GV P+
Sbjct: 1119 AYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPA 1178


>gi|356507618|ref|XP_003522561.1| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Glycine max]
          Length = 630

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/630 (58%), Positives = 473/630 (75%), Gaps = 2/630 (0%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M   LK+A    +SLSYCS L++ CLS KS +F K +H H  KLG N +TYLGNRCLDLY
Sbjct: 1   MYPLLKQAQGPYSSLSYCSLLLNHCLSKKSLNFVKIVHAHFLKLGLNTYTYLGNRCLDLY 60

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           S FG  +D  ++FD+I  KN  SWNICL+ LLKS     A  +FD +P  DVV+WNSMIS
Sbjct: 61  SEFGHLNDAPKVFDDISHKNSTSWNICLKWLLKSGQFGKACHLFDAMPVRDVVTWNSMIS 120

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNV 180
           GYASCGY  +ALE+F +MQ  GVRPSGFTFSIL+S VSS  H KQIH  MIRSG+ L NV
Sbjct: 121 GYASCGYFSHALELFVEMQGTGVRPSGFTFSILMSLVSSPSHAKQIHSRMIRSGVDLDNV 180

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
           VLGNSLI MYG+LG++ Y+FGV + M++ D+ISWNSLI  C  +G+ ELAL+QFY MR +
Sbjct: 181 VLGNSLITMYGRLGLVEYSFGVIMTMKQFDVISWNSLIWACHRAGHHELALEQFYWMRGA 240

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
            + PD++T S++++ C+ LR+LDKGKQVFA   K+GF+ NSIV SA IDLFSKCNRLEDS
Sbjct: 241 EFLPDQFTCSVLMSVCSNLRDLDKGKQVFAFCFKMGFVYNSIVSSAAIDLFSKCNRLEDS 300

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI- 359
           VRLF++ D+WD A+ N MIS+Y R+  GE  L+LF L LR++IRPTE+ +S +LSS+ I 
Sbjct: 301 VRLFKEQDQWDSALCNSMISSYARHYLGEDTLQLFVLTLRKNIRPTEYMVSSLLSSVSIF 360

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
            PVE G+Q HS+  K GF+S+AVVA+SL+ MYAK G I+ +  IF ++  +DLVSWNTIM
Sbjct: 361 LPVEVGNQIHSLVPKLGFESDAVVANSLVHMYAKFGFINDALNIFNEMKIKDLVSWNTIM 420

Query: 420 MGLTQNGRAAETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           MGLT  GR + T+D+F ELL  EG+ PDRITL AVLLACNYG  VD+G+ +FS+M+ E+ 
Sbjct: 421 MGLTYYGRVSLTMDLFRELLTREGMLPDRITLTAVLLACNYGLLVDEGIEIFSSMEMEFR 480

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           V PGEEHYAC++++LC+AG+L +AIDI  TMP++    IW SI  A AIYGD+++ E VA
Sbjct: 481 VKPGEEHYACVVEMLCKAGKLKEAIDIIETMPYRTTSDIWRSIFSACAIYGDLQIIEGVA 540

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           +++MD++    LPY +L QAY MRGRW+++VR++K     G  +  G SWIGIKN +YTF
Sbjct: 541 KKIMDMESLISLPYLVLAQAYQMRGRWDSMVRMRKAAENRGSKEFIGHSWIGIKNNVYTF 600

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            + +LQH+GG+ +YLVL LL WEME EG V
Sbjct: 601 ASNQLQHYGGKDLYLVLNLLVWEMETEGYV 630


>gi|255558478|ref|XP_002520264.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540483|gb|EEF42050.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 524

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/522 (62%), Positives = 401/522 (76%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
           +PE DVVSWNSMISG+AS GY D AL +F +MQ  GVRPS FT+SI++S V  A HGK++
Sbjct: 1   MPERDVVSWNSMISGFASYGYFDSALGIFGEMQNMGVRPSAFTYSIMVSIVFDALHGKEL 60

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           HGSMIRSG +  NVVLGNSLIDMYGK G + YAFGVF  MEE+D+I+WNSLI GC  SGY
Sbjct: 61  HGSMIRSGFNTLNVVLGNSLIDMYGKFGCVDYAFGVFFTMEEVDVITWNSLIIGCCKSGY 120

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
           GELAL QF  MR SGYSPDE+T S VI +C+ LRNLDKGKQ+FA  +KVGFLSN+IV SA
Sbjct: 121 GELALHQFCLMRSSGYSPDEFTCSAVITSCSNLRNLDKGKQIFAFCLKVGFLSNTIVSSA 180

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            IDLFSKCNRLEDSV+LFE+LD+ + A+ N MIS+Y  +GFGE AL+LF L LRE+IRPT
Sbjct: 181 AIDLFSKCNRLEDSVQLFEELDQLNSALCNSMISSYAGHGFGENALQLFVLALRENIRPT 240

Query: 347 EFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
           EFT+S VLS I I P E G+QFHS  +K GF+ +A+VASSL++MY K G ID + +IF  
Sbjct: 241 EFTISSVLSFISIFPPEQGTQFHSSVVKLGFELDAIVASSLVQMYTKFGFIDYAMDIFKS 300

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +  RDL+SWNT++MGLTQNGR  E LD F++LL  G PPDRITLA VLLAC+YGGF+++G
Sbjct: 301 MTVRDLISWNTMIMGLTQNGRVIEALDAFKKLLNRGPPPDRITLAGVLLACSYGGFIEEG 360

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
           M +FS+M+  YG++P  EHYA I++LLCQAG L +A+ +   MP +P      SIL A A
Sbjct: 361 MTIFSSMQGSYGIIPSNEHYASIVNLLCQAGWLDEAMSMIEAMPSEPNSMTCRSILHACA 420

Query: 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586
           I GD+KL E VAER++D+   S LPY +L + Y MRG+WEA+VRVKK M +     V GC
Sbjct: 421 IRGDLKLMEGVAERLVDIGSLSSLPYLVLARMYEMRGQWEAVVRVKKTMERTKAKTVDGC 480

Query: 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           SWIGIKN + TF   +LQHHG + IY +LRL+ WEMEDEGC+
Sbjct: 481 SWIGIKNNVRTFKEDQLQHHGCKDIYSLLRLMNWEMEDEGCL 522



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 150/293 (51%), Gaps = 35/293 (11%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS +I  C + ++ D  K I     K+GF ++T + +  +DL+S+    +D +QLF+E+ 
Sbjct: 143 CSAVITSCSNLRNLDKGKQIFAFCLKVGFLSNTIVSSAAIDLFSKCNRLEDSVQLFEEL- 201

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                            D L++AL              NSMIS YA  G+ + AL++F  
Sbjct: 202 -----------------DQLNSAL-------------CNSMISSYAGHGFGENALQLFVL 231

Query: 138 MQLQGVRPSGFTFSILLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              + +RP+ FT S +LS +S      G Q H S+++ G  L + ++ +SL+ MY K G 
Sbjct: 232 ALRENIRPTEFTISSVLSFISIFPPEQGTQFHSSVVKLGFEL-DAIVASSLVQMYTKFGF 290

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           + YA  +F +M   D+ISWN++I G   +G    ALD F  +   G  PD  T++ V+ A
Sbjct: 291 IDYAMDIFKSMTVRDLISWNTMIMGLTQNGRVIEALDAFKKLLNRGPPPDRITLAGVLLA 350

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    +++G  +F ++    G + ++   ++ ++L  +   L++++ + E +
Sbjct: 351 CSYGGFIEEGMTIFSSMQGSYGIIPSNEHYASIVNLLCQAGWLDEAMSMIEAM 403



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 176/373 (47%), Gaps = 39/373 (10%)

Query: 34  AKTIHGHLFKLGFNA-HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            K +HG + + GFN  +  LGN  +D+Y +FG                C+          
Sbjct: 57  GKELHGSMIRSGFNTLNVVLGNSLIDMYGKFG----------------CV---------- 90

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                D A  VF  + E DV++WNS+I G    GY + AL  F  M+  G  P  FT S 
Sbjct: 91  -----DYAFGVFFTMEEVDVITWNSLIIGCCKSGYGELALHQFCLMRSSGYSPDEFTCSA 145

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++++ S+  +   GKQI    ++ G  LSN ++ ++ ID++ K   L  +  +F  +++L
Sbjct: 146 VITSCSNLRNLDKGKQIFAFCLKVGF-LSNTIVSSAAIDLFSKCNRLEDSVQLFEELDQL 204

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +    NS+IS     G+GE AL  F         P E+TIS V++  +     ++G Q  
Sbjct: 205 NSALCNSMISSYAGHGFGENALQLFVLALRENIRPTEFTISSVLSFISIFPP-EQGTQFH 263

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +  VK+GF  ++IV S+ + +++K   ++ ++ +F+ +   D    N MI    + G   
Sbjct: 264 SSVVKLGFELDAIVASSLVQMYTKFGFIDYAMDIFKSMTVRDLISWNTMIMGLTQNGRVI 323

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAVVASSL 387
            AL+ F+ +L     P   TL+ VL +      +E G + F SM    G   +    +S+
Sbjct: 324 EALDAFKKLLNRGPPPDRITLAGVLLACSYGGFIEEGMTIFSSMQGSYGIIPSNEHYASI 383

Query: 388 MEMYAKTGSIDSS 400
           + +  + G +D +
Sbjct: 384 VNLLCQAGWLDEA 396


>gi|449453105|ref|XP_004144299.1| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/614 (52%), Positives = 438/614 (71%), Gaps = 1/614 (0%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           +KA LS+ S LI RCL   S   AKTIHG L KLG +++T+L NRCL LY+ FG   DVL
Sbjct: 12  HKALLSHYSSLIRRCLVLGSVHNAKTIHGQLLKLGLDSNTFLANRCLQLYALFGPVHDVL 71

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           ++FD I  KN ISWNICL+G+ +  ++D A  +FD +PE D+VSWN+MISGY S G+ + 
Sbjct: 72  KVFDGIKDKNIISWNICLKGMFRFGDVDGARHLFDVMPERDIVSWNTMISGYVSSGFGNS 131

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A+ +  +MQ  G RPS +TFSILLS VSSA HGKQ+HGSMIRSG+ +S++VLGNSLIDMY
Sbjct: 132 AMGVSLEMQNAGFRPSEYTFSILLSLVSSAFHGKQVHGSMIRSGVDVSSMVLGNSLIDMY 191

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           GK+G++ Y F +F +ME++D+ISWNSLI GC  SG+  LAL+QF+ MR + +SPD++TIS
Sbjct: 192 GKVGLVDYMFVIFSSMEKVDVISWNSLILGCHRSGFRVLALNQFFLMRTTEHSPDQFTIS 251

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           +VI+ C  L+ L+ GKQ+FA   K+GF SNSIVLSATIDLFSKC+ L+ +V+LFE  ++W
Sbjct: 252 MVISICCCLQELELGKQIFAFCFKMGFTSNSIVLSATIDLFSKCDSLKVAVQLFEDTNQW 311

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFH 369
           D  + NVMIS++  +G    ++ LF   LRE++ P + T  S + S     PVE GSQ H
Sbjct: 312 DPVLCNVMISSFAWHGHWRDSMWLFVYTLRENLGPIDTTLSSVLSSISVFTPVELGSQIH 371

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           ++ +K GF S+ +V SSL++MYAK GSID + ++F+ +  RDL+SWNT++MGL  NG+  
Sbjct: 372 NLVLKLGFQSDVIVTSSLVDMYAKVGSIDDAMKVFIDMPFRDLISWNTMIMGLVDNGKYF 431

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L  F +L+ EG+ PDRITLA VLLAC+Y G V++G+++FS M  E+GV+P  EHY+C+
Sbjct: 432 EALHTFNKLVMEGVLPDRITLAGVLLACSYAGLVEEGLVIFSKMTYEHGVVPRNEHYSCV 491

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           ++LL +AG+  +A++I  T  +QP  + W S+L   AI+GD+K+ E VAE MM L+  S 
Sbjct: 492 VNLLSRAGKFEEAVNIIKTTLYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSS 551

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
           LPYS+L QAYAMR +WE++VRVKK        KV  CSWI  K+  Y F   +LQ    +
Sbjct: 552 LPYSVLAQAYAMRCQWESMVRVKKTWENIATQKVKACSWIVTKDYAYAFQDDQLQLLSRE 611

Query: 610 KIYLVLRLLTWEME 623
            I  VL L+ WE+E
Sbjct: 612 NIISVLELIIWEIE 625


>gi|449517072|ref|XP_004165570.1| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/614 (51%), Positives = 437/614 (71%), Gaps = 1/614 (0%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           +KA LS+ S LI RCL   S   AKTIHG L KLG +++T+L NRCL LY+ FG   DVL
Sbjct: 12  HKALLSHYSSLIRRCLVLGSVHNAKTIHGQLLKLGLDSNTFLANRCLQLYALFGPVHDVL 71

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           ++FD I  KN ISWNICL+G+ +  ++D A  +FD +PE D+VSWN+MISGY S G+ + 
Sbjct: 72  KVFDGIKDKNIISWNICLKGMFRFGDVDGARHLFDVMPERDIVSWNTMISGYVSSGFVNS 131

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A+ +  +MQ  G RPS +TFSILLS V SA HGKQ+HGSMIRSG+ +S++VLGNSLIDMY
Sbjct: 132 AMGVSLEMQNAGFRPSEYTFSILLSLVPSAFHGKQVHGSMIRSGVDVSSMVLGNSLIDMY 191

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           GK+G++ Y F +F +ME++D+ISWNSLI GC  SG+  LAL+QF+ MR + +SPD++TIS
Sbjct: 192 GKVGLVDYMFVIFSSMEKVDVISWNSLILGCHRSGFRVLALNQFFLMRTTEHSPDQFTIS 251

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           +VI+ C  L+ L+ GKQ+FA   K+GF SNSIVLSATIDLFSKC+ L+ +V+LFE  ++W
Sbjct: 252 MVISICCCLQELELGKQIFAFCFKMGFTSNSIVLSATIDLFSKCDSLKVAVQLFEDTNQW 311

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFH 369
           D  + NVMIS++  +G    ++ LF   LRE++ P + T  S + S     PVE GSQ H
Sbjct: 312 DPVLCNVMISSFAWHGHWRDSMWLFVYTLRENLGPIDTTLSSVLSSISVFTPVELGSQIH 371

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           ++ +K GF S+ +V SSL++MYAK GSID + ++F+ +  RDL+SWNT++MGL  NG+  
Sbjct: 372 NLVLKLGFQSDVIVTSSLVDMYAKVGSIDDAMKVFIDMPFRDLISWNTMIMGLVDNGKYF 431

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L  F +L+ EG+ PDRITLA VLLAC+Y G V++G+++FS M  E+GV+P  EHY+C+
Sbjct: 432 EALHTFNKLVMEGVLPDRITLAGVLLACSYAGLVEEGLVIFSKMTYEHGVVPRNEHYSCV 491

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           ++LL +AG+  +A++I  T  +QP  + W S+L   AI+GD+K+ E VAE MM L+  S 
Sbjct: 492 VNLLSRAGKFEEAVNIIKTTLYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSS 551

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
           LPYS+L QAYAMR +WE++VRVKK        KV  CSWI  K+  Y F   +LQ    +
Sbjct: 552 LPYSVLAQAYAMRCQWESMVRVKKTWENIATQKVKACSWIVTKDYAYAFQDDQLQLLSRE 611

Query: 610 KIYLVLRLLTWEME 623
            I  VL L+ WE+E
Sbjct: 612 NIISVLELIIWEIE 625


>gi|75175328|sp|Q9LP03.1|PPR73_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g43980, mitochondrial; Flags: Precursor
 gi|8778677|gb|AAF79685.1|AC022314_26 F9C16.15 [Arabidopsis thaliana]
          Length = 633

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 309/627 (49%), Positives = 429/627 (68%), Gaps = 2/627 (0%)

Query: 1   MSSYLKKAH-VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL 59
           M   L++AH +   S  Y S+L++R L  KS   AK +H  L + GF   TY GNRCL L
Sbjct: 1   MFQLLRRAHGLCMPSSLYFSRLVNRSLLSKSPTLAKIVHAQLLEAGFVRTTYWGNRCLQL 60

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y + G+  + LQLFD+IP KN I+WN+CL+GL K+  L+ AL +FDE+PE DVVSWN+MI
Sbjct: 61  YFKSGSVINALQLFDDIPDKNTITWNVCLKGLFKNGYLNNALDLFDEMPERDVVSWNTMI 120

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
           SG  SCG+ +Y + +F  MQ   +RP+ FTFSIL S V+   HG+QIHG+ I SG+S  N
Sbjct: 121 SGLVSCGFHEYGIRVFFDMQRWEIRPTEFTFSILASLVTCVRHGEQIHGNAICSGVSRYN 180

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           +V+ NS++DMY +LGV  YA  VFL ME+ D++SWN LI  C +SG  E+ALDQF+ MR 
Sbjct: 181 LVVWNSVMDMYRRLGVFDYALSVFLTMEDRDVVSWNCLILSCSDSGNKEVALDQFWLMRE 240

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
               PDEYT+S+V++ C+ LR L KGKQ  AL +K+GFLSNSIVL A ID+FSKCNRL+D
Sbjct: 241 MEIQPDEYTVSMVVSICSDLRELSKGKQALALCIKMGFLSNSIVLGAGIDMFSKCNRLDD 300

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           SV+LF +L++WD  + N MI +Y  +  GE AL LF L + + +RP +FT S VLSS+  
Sbjct: 301 SVKLFRELEKWDSVLCNSMIGSYSWHCCGEDALRLFILAMTQSVRPDKFTFSSVLSSMNA 360

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             ++HG+  HS+ IK GFD +  VA+SLMEMY KTGS+D +  +F K D +DL+ WNT++
Sbjct: 361 VMLDHGADVHSLVIKLGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVI 420

Query: 420 MGLTQNGRAAETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           MGL +N RA E+L +F +LL  + L PDR+TL  +L+AC Y GFV++G+ +FS+M++ +G
Sbjct: 421 MGLARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAGFVNEGIQIFSSMEKAHG 480

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           V PG EHYACII+LLC+ G + +A DI   +PF+P   IWE IL AS   GD +L E VA
Sbjct: 481 VNPGNEHYACIIELLCRVGMINEAKDIADKIPFEPSSHIWEPILCASLDLGDTRLAETVA 540

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           + M++ +  S  PY +L + Y M  RWE  V+++  M ++ +    G S I I++ +++F
Sbjct: 541 KTMLESEPKSSFPYLVLIKIYEMTWRWENSVKLRYAMNEHKLKSAQGSSKISIESSVFSF 600

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDE 625
            A +LQ HGG     +L LL+W+  D+
Sbjct: 601 EADQLQIHGGHDTCALLDLLSWDSFDQ 627


>gi|334183080|ref|NP_175064.2| pentatricopeptide repeat-containing protein-like protein
           [Arabidopsis thaliana]
 gi|332193889|gb|AEE32010.1| pentatricopeptide repeat-containing protein-like protein
           [Arabidopsis thaliana]
          Length = 621

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/610 (49%), Positives = 421/610 (69%), Gaps = 1/610 (0%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           Y S+L++R L  KS   AK +H  L + GF   TY GNRCL LY + G+  + LQLFD+I
Sbjct: 6   YFSRLVNRSLLSKSPTLAKIVHAQLLEAGFVRTTYWGNRCLQLYFKSGSVINALQLFDDI 65

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P KN I+WN+CL+GL K+  L+ AL +FDE+PE DVVSWN+MISG  SCG+ +Y + +F 
Sbjct: 66  PDKNTITWNVCLKGLFKNGYLNNALDLFDEMPERDVVSWNTMISGLVSCGFHEYGIRVFF 125

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            MQ   +RP+ FTFSIL S V+   HG+QIHG+ I SG+S  N+V+ NS++DMY +LGV 
Sbjct: 126 DMQRWEIRPTEFTFSILASLVTCVRHGEQIHGNAICSGVSRYNLVVWNSVMDMYRRLGVF 185

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            YA  VFL ME+ D++SWN LI  C +SG  E+ALDQF+ MR     PDEYT+S+V++ C
Sbjct: 186 DYALSVFLTMEDRDVVSWNCLILSCSDSGNKEVALDQFWLMREMEIQPDEYTVSMVVSIC 245

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           + LR L KGKQ  AL +K+GFLSNSIVL A ID+FSKCNRL+DSV+LF +L++WD  + N
Sbjct: 246 SDLRELSKGKQALALCIKMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCN 305

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSG 376
            MI +Y  +  GE AL LF L + + +RP +FT S VLSS+    ++HG+  HS+ IK G
Sbjct: 306 SMIGSYSWHCCGEDALRLFILAMTQSVRPDKFTFSSVLSSMNAVMLDHGADVHSLVIKLG 365

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FD +  VA+SLMEMY KTGS+D +  +F K D +DL+ WNT++MGL +N RA E+L +F 
Sbjct: 366 FDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMGLARNSRAVESLAIFN 425

Query: 437 ELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           +LL  + L PDR+TL  +L+AC Y GFV++G+ +FS+M++ +GV PG EHYACII+LLC+
Sbjct: 426 QLLMNQSLKPDRVTLMGILVACCYAGFVNEGIQIFSSMEKAHGVNPGNEHYACIIELLCR 485

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            G + +A DI   +PF+P   IWE IL AS   GD +L E VA+ M++ +  S  PY +L
Sbjct: 486 VGMINEAKDIADKIPFEPSSHIWEPILCASLDLGDTRLAETVAKTMLESEPKSSFPYLVL 545

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
            + Y M  RWE  V+++  M ++ +    G S I I++ +++F A +LQ HGG     +L
Sbjct: 546 IKIYEMTWRWENSVKLRYAMNEHKLKSAQGSSKISIESSVFSFEADQLQIHGGHDTCALL 605

Query: 616 RLLTWEMEDE 625
            LL+W+  D+
Sbjct: 606 DLLSWDSFDQ 615



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 139/316 (43%), Gaps = 41/316 (12%)

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P     S ++N     ++    K V A  ++ GF+  +   +  + L+ K   + ++++L
Sbjct: 2   PSSLYFSRLVNRSLLSKSPTLAKIVHAQLLEAGFVRTTYWGNRCLQLYFKSGSVINALQL 61

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED--------------------- 342
           F+ +   +    NV +    + G+   AL+LF  M   D                     
Sbjct: 62  FDDIPDKNTITWNVCLKGLFKNGYLNNALDLFDEMPERDVVSWNTMISGLVSCGFHEYGI 121

Query: 343 ----------IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDS-NAVVASSLMEMY 391
                     IRPTEFT S +L+S+ +  V HG Q H  AI SG    N VV +S+M+MY
Sbjct: 122 RVFFDMQRWEIRPTEFTFS-ILASL-VTCVRHGEQIHGNAICSGVSRYNLVVWNSVMDMY 179

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            + G  D +  +F+ ++ RD+VSWN +++  + +G     LD F  + E  + PD  T++
Sbjct: 180 RRLGVFDYALSVFLTMEDRDVVSWNCLILSCSDSGNKEVALDQFWLMREMEIQPDEYTVS 239

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            V+  C+    + KG     A+  + G +         ID+  +  +L  ++ +   +  
Sbjct: 240 MVVSICSDLRELSKGKQAL-ALCIKMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFREL-- 296

Query: 512 QPGCSIWESILRASAI 527
                 W+S+L  S I
Sbjct: 297 ----EKWDSVLCNSMI 308


>gi|297852182|ref|XP_002893972.1| F9C16.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297339814|gb|EFH70231.1| F9C16.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 599

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/594 (51%), Positives = 414/594 (69%), Gaps = 2/594 (0%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           Y S+L+DR L  K     + +H  L K GF   TY GNRCL LY + G   D  +LFD+I
Sbjct: 6   YFSRLVDRYLLSKCPTLTRIVHAQLLKAGFIRTTYWGNRCLQLYFKSGAVIDAFRLFDDI 65

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P KN ISWN+CL+GL K+  L+ AL +FDE+PE DVVSWN+MISG+ SCG+ +YA+ +F 
Sbjct: 66  PDKNTISWNVCLKGLFKNGFLNNALDLFDEMPERDVVSWNTMISGFVSCGFPEYAIRVFF 125

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            MQ   +RP+ FTFSIL S VS   HG+QIHG+ I SG+S SN+V+ NSL+DMY ++GV 
Sbjct: 126 DMQRWVIRPTEFTFSILASLVSCVRHGEQIHGNAICSGVSKSNLVVWNSLMDMYRRIGVF 185

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            YA  VFL MEE D+ISWN LI  C +SG  E+ALDQF+ MR     PDEYT+S+V++ C
Sbjct: 186 DYAISVFLTMEERDVISWNCLILCCSDSGNKEVALDQFWLMREMENKPDEYTVSMVVSIC 245

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           + L++L KGKQ  AL +K+GFL N+IVL + ID+FSKCNRL+DSV+LF QL++WD  + N
Sbjct: 246 SDLQDLCKGKQAIALCIKMGFLFNNIVLGSGIDMFSKCNRLDDSVKLFRQLEKWDSVLCN 305

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSG 376
            MI +Y  +  GE  L LF + +R+ I P +FT S VLSS+    + HG+Q H++A K G
Sbjct: 306 SMIGSYSWHCCGEDTLTLFIVAMRQSISPDKFTFSSVLSSMNAVMLGHGAQVHALATKLG 365

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FDS+  VA+SLMEMY KTGS+DS+  +F   D++DL+ WNT++MGL +N RA E+L VF 
Sbjct: 366 FDSDTTVATSLMEMYFKTGSVDSAMGVFAITDEKDLIFWNTVIMGLARNSRAVESLSVFN 425

Query: 437 ELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           +LL  E GL PDR+T   +L+AC Y GFV+KG+ +FS+M++ + V PG EHYACII+LLC
Sbjct: 426 QLLMDERGLKPDRVTFMGILVACCYAGFVNKGIQIFSSMEKTHDVDPGNEHYACIIELLC 485

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG + +A DI   +PF+P   IWE IL AS   GD +L E+VA+ M++ +  S  PY +
Sbjct: 486 RAGMINEAKDIADKIPFEPSSHIWEPILCASVDVGDTRLAESVAKIMIESEPKSSFPYLV 545

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
           L + Y M  RWE  V+++  M ++ +    G S IGIK+ +Y+F A +LQ HGG
Sbjct: 546 LIKLYEMTWRWENSVKLRYTMNEHKLKSTQGSSKIGIKSSVYSFEAEQLQIHGG 599


>gi|357167016|ref|XP_003580963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 683

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/585 (42%), Positives = 354/585 (60%), Gaps = 7/585 (1%)

Query: 51  YLGNRCLDLYSRFGTSDDVLQLFDEIP--QKNCISWNICLRGLLKSDNLDTALKVFDEIP 108
           +L N     YSR G +   + L    P  + N  S NI L  LLK  +L  A ++FD +P
Sbjct: 82  FLANCLAAAYSRLGAAPSAVALLVHAPGAEANRFSHNILLAALLKCRDLPAACRLFDGMP 141

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG 168
             D V++NSMISGY   G  D A  +  +M   GVRPSGFTFSI+ S V SA HG Q+H 
Sbjct: 142 HRDTVAYNSMISGYVDGGRPDEAFRLVRRMMELGVRPSGFTFSIVSSAVCSAPHGVQVHA 201

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
           + +RSG +  N V+GN+L+DMY ++G+L YA  V  +MEE DI+S NS++S   + G   
Sbjct: 202 AAVRSGSANHNTVVGNTLVDMYRRVGLLKYAVRVLWSMEEQDIVSMNSVMSVYKDGGQSH 261

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
              + F  +R   +  DEY++SIV++ CT   +  KG Q+  L +K+G LSNS++ SA I
Sbjct: 262 GVFECFRLIRSHWFMVDEYSVSIVLSTCTDAEDFAKGDQLLVLCIKMGLLSNSVICSAVI 321

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
            L S  +RL D+V LFE + +WD    N MIS + R G  E AL LF + LR  I PTEF
Sbjct: 322 GLLSVSDRLADAVWLFEGVAKWDSETCNAMISGFARSGIMEQALGLFAMALRNGILPTEF 381

Query: 349 TLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           T + VL  S     +E G+Q H++  K GF+ + +VA++L++MY K GS+  +  +F  +
Sbjct: 382 TFASVLRWSSCFGLMEQGTQIHALIFKCGFEDDIIVATALVDMYFKLGSLKHARRLFSNV 441

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
             +DLV WNT+++GL+ NGR  E L VF  +L+ G+ PDRITL A L AC+  G V++GM
Sbjct: 442 CAKDLVLWNTMIIGLSHNGRGKEALQVFWSMLKCGIQPDRITLFAALSACSLLGLVNEGM 501

Query: 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            + S  K  Y V+PG EHY C++DLL  AG   +A+D+      +   ++  +IL +  I
Sbjct: 502 NIISLFKANYHVVPGLEHYTCVVDLLSCAGMFREAVDLVDDKLQKCNTAVLSNILESCVI 561

Query: 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587
            GD+ + E+VAE+MM L+  S LPY +L Q Y  R +WE++ R+ ++M   G  KV GCS
Sbjct: 562 QGDIAMAESVAEKMMKLKPLSSLPYIVLAQKYGGRCKWESVARMWRLMEDQGAKKVQGCS 621

Query: 588 WIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE----GCV 628
           W+ IK+ I+ F + ++ H GG+  Y VL LL WEM D     GCV
Sbjct: 622 WLCIKSEIHVFTSEQVVHLGGEATYAVLDLLFWEMMDNRSAPGCV 666



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 38/357 (10%)

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-------VLY 197
           P+    S LL+  +S      +H  ++RS        L N L   Y +LG       +L 
Sbjct: 46  PTVAALSALLARCASLTAAAALHARLLRSSRLFRTPFLANCLAAAYSRLGAAPSAVALLV 105

Query: 198 YAFG--------------------------VFLNMEELDIISWNSLISGCFNSGYGELAL 231
           +A G                          +F  M   D +++NS+ISG  + G  + A 
Sbjct: 106 HAPGAEANRFSHNILLAALLKCRDLPAACRLFDGMPHRDTVAYNSMISGYVDGGRPDEAF 165

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDL 290
                M   G  P  +T SIV +A     +   G QV A +V+ G  + N++V +  +D+
Sbjct: 166 RLVRRMMELGVRPSGFTFSIVSSAVC---SAPHGVQVHAAAVRSGSANHNTVVGNTLVDM 222

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           + +   L+ +VR+   ++  D   +N ++S Y   G      E F+L+        E+++
Sbjct: 223 YRRVGLLKYAVRVLWSMEEQDIVSMNSVMSVYKDGGQSHGVFECFRLIRSHWFMVDEYSV 282

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           S VLS+         G Q   + IK G  SN+V+ S+++ + + +  +  +  +F  + K
Sbjct: 283 SIVLSTCTDAEDFAKGDQLLVLCIKMGLLSNSVICSAVIGLLSVSDRLADAVWLFEGVAK 342

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            D  + N ++ G  ++G   + L +F   L  G+ P   T A+VL   +  G +++G
Sbjct: 343 WDSETCNAMISGFARSGIMEQALGLFAMALRNGILPTEFTFASVLRWSSCFGLMEQG 399


>gi|125544438|gb|EAY90577.1| hypothetical protein OsI_12178 [Oryza sativa Indica Group]
          Length = 607

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/601 (38%), Positives = 354/601 (58%), Gaps = 5/601 (0%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++S  S L+  C S  +      +H HL K        +L N     Y R G +   + +
Sbjct: 8   TISTLSALLAGCASLST---TAALHAHLLKSSRLFRPVFLANCLAAAYCRLGAAPSAVAV 64

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
               P+ N  S NI L  +LKS +L +A ++FDE+P+ D V++NSM+SGY   G ++ AL
Sbjct: 65  LRHAPEPNIFSRNILLGAMLKSRDLLSARRLFDEMPDRDAVAYNSMMSGYIDGGRNNEAL 124

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +   M   GVRPSGFTFSI+LS V  A HG Q+H + +R   +  N V+GN+LI+MY +
Sbjct: 125 SLVWTMLEAGVRPSGFTFSIILSAVRVARHGVQVHAAAVRHCFAHQNSVVGNALINMYRR 184

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           +G+L YA  VF +M   DI+SWNS++S   + G      + F  +R  G   DE ++S V
Sbjct: 185 VGLLEYAVQVFWSMNGHDIVSWNSVMSVYRDDGQRRQVFECFRMIRSHGLFFDECSLSTV 244

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC    +  KG Q+    VK+G L NS++ SA I L    +RL D+V LF+ +  WD 
Sbjct: 245 LSACIDAEDSSKGDQLLTHCVKMGLLRNSLICSAVIGLLCASDRLADAVYLFKGMATWDS 304

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSM 371
              N MIS Y R G  E AL LF + L+  I PT FT +  L  S     VE G+Q H++
Sbjct: 305 ETCNAMISGYARNGLMEQALGLFTMALQNGILPTGFTFASALRWSSCFGLVEQGTQIHAL 364

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G + + ++A++L++MY K  S+  + +IF ++  +DLV WNT+++GL+ NGR  E 
Sbjct: 365 IFKLGLEDDLIIATALVDMYCKLASLKHAKKIFSRVSFKDLVLWNTMIIGLSHNGRGKEA 424

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L VF ++L+  + PDRITL+ VL AC++ G V++G+ + S  +++Y ++PG EHY C++D
Sbjct: 425 LQVFRQMLKCNIQPDRITLSGVLSACSFEGLVNEGIKMVSLFEDKYHIVPGVEHYTCVVD 484

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +L +AG LG+A+D   +   +   +   ++L AS I  D ++ E +AE+M  L+  S LP
Sbjct: 485 MLSRAGMLGEAVDFVESKLQKCIVAALSNVLEASLIKRDFRMAELIAEKMTKLKPRSSLP 544

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y +L Q+Y  R +WE++ R+ + M   G  +V  CSWI  KNRI+ F + ++ HHG +  
Sbjct: 545 YVVLAQSYGARCKWESMARMWRSMEDQGSKEVQECSWICTKNRIHVFTSEQILHHGKEAT 604

Query: 612 Y 612
           Y
Sbjct: 605 Y 605


>gi|413944243|gb|AFW76892.1| hypothetical protein ZEAMMB73_583413 [Zea mays]
          Length = 639

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/595 (38%), Positives = 348/595 (58%), Gaps = 3/595 (0%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
            F    YL N     YSR G +   + L     + N  S NI L  L+ S  L+ A  +F
Sbjct: 45  AFFRSPYLSNCLGAAYSRLGAAPYAVALLRAAAKPNIFSHNILLSALVSSGLLEDARGLF 104

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK 164
           D +P+ D V++N+M+SGY +    D A  +F  M  + VRP+ FTFSI+ S V S   G+
Sbjct: 105 DGMPQRDAVTYNAMLSGYVAGALLDEAFHLFCSMNERDVRPTPFTFSIVSSAVGSVRRGQ 164

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           Q+H + +R GL+ S+VV+GN+LIDMYG++G+L YA  VF  ME++D+ SWNS++S   + 
Sbjct: 165 QLHAAAVRHGLAHSDVVVGNALIDMYGRVGLLEYAARVFSCMEQVDVTSWNSVMSVYKDQ 224

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                    F +MR  G+S D +T+SIV++AC+ +++L KG Q+ AL +K+GFL+N +V 
Sbjct: 225 ALTSTVFKCFGTMRSKGFSVDGFTVSIVLSACSDVKDLVKGDQMLALCIKMGFLTNFMVS 284

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           SA ID     +RL D+++LF ++  W     N +IS Y R G  E AL LF + +R  I 
Sbjct: 285 SAIIDFLCMSDRLSDALQLFREMPTWGSEPCNALISGYARSGLMEEALSLFAVSMRNGIV 344

Query: 345 PTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P EF+ + VL  S     +E G+Q H +  K GF ++ +V+++L +MY K G    + +I
Sbjct: 345 PNEFSFASVLKWSSCFGLMEQGTQIHCLVCKLGFQNDVIVSTALTDMYCKLGLTKHARKI 404

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  +  +DLV WNT+++GL QNGR+ E L +F+ +L+ G+ PDRITL   L AC   G V
Sbjct: 405 FDTVGAKDLVLWNTMLLGLLQNGRSKEALVIFKRILKCGIQPDRITLFGALSACGLEGLV 464

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
            +GM + +  K+ Y +MP  EHY C++D+LC  G   +A++       +   +I+ +IL 
Sbjct: 465 SEGMEIITLFKDRYHIMPSLEHYTCVVDMLCCTGMFREAVNYVENKLAKFSAAIFSNILE 524

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
           A  + G++ + E VAE+M+  +    LPY +L Q Y  R +WE +  V + M      KV
Sbjct: 525 ACIVQGNIGIAELVAEKMVMQKSRLSLPYIVLAQIYGARCKWEKMAGVWRSMENQRAKKV 584

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE--GCVYLECDKLD 636
             CSW+ IKN IY F + ++ HHG    Y VL LL W+M +      ++E + LD
Sbjct: 585 QSCSWLCIKNHIYVFTSEQILHHGKGATYEVLDLLFWDMMNHKYAPSFVEPNNLD 639


>gi|242092732|ref|XP_002436856.1| hypothetical protein SORBIDRAFT_10g010013 [Sorghum bicolor]
 gi|241915079|gb|EER88223.1| hypothetical protein SORBIDRAFT_10g010013 [Sorghum bicolor]
          Length = 626

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/584 (39%), Positives = 341/584 (58%), Gaps = 4/584 (0%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK-NCISWNICLRGLLKSDNLDTALKV 103
            F    YL N     YSR G +   + +      K N  S NI L  LL S  L+ A  +
Sbjct: 31  AFFRSPYLANCLGAAYSRLGAAPSAVAVLRASAAKPNVFSHNILLSALLSSGLLEDARGL 90

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG 163
           FD +   D V++N+M+SGY +    D A  +F  M+ +GVRP+ FTFSI+ S V S   G
Sbjct: 91  FDGMSHRDAVTYNAMLSGYVAGALPDEAFRLFYSMRERGVRPTAFTFSIVSSAVGSVRRG 150

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           +Q+H + +R GL+  + V+GN+LIDMYG++G+L YA  VF  ME+ D+ SWNS++S   +
Sbjct: 151 RQLHAAAVRHGLAHRDTVVGNALIDMYGRVGLLDYAARVFSCMEQPDVTSWNSVMSVYKD 210

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
                     F SMR +G+S D +T+SIV + C+ +++  KG Q+ +L +K+ FL+NSIV
Sbjct: 211 QPLSTTVFRCFQSMRSNGFSVDGFTVSIVFSVCSDVKDFAKGDQMLSLCIKMNFLTNSIV 270

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            SA ID     +RL D+V+ F ++  W     N +IS Y R G  E AL LF + +R  I
Sbjct: 271 SSAVIDFLCVSDRLSDAVQFFREMPTWASEPCNALISGYARSGLMEEALSLFAVSMRNGI 330

Query: 344 RPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P EF+ + VL  S     +E G+Q H +  K GF ++ +V+++L +MY K G +  + +
Sbjct: 331 VPNEFSFASVLRWSSCFGLMEQGTQIHCLVCKLGFQNDVIVSTALTDMYCKLGLMKHARK 390

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           IF  +  +DLV WNT+++GL QNGRA E L +F+ +L+ G+ PDRITL   L AC   G 
Sbjct: 391 IFNMVGAKDLVLWNTMLLGLLQNGRAKEALVIFKRILKCGIQPDRITLFGALSACGLEGL 450

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID-ITSTMPFQPGCSIWESI 521
           V +GM + +  K+ Y +MP  +HY C++D+LC+A    +A+D + + MP +   + + +I
Sbjct: 451 VTEGMDIITLFKDRYHIMPSLDHYTCVVDMLCRARMFREAVDYVENNMP-KFSAATFSNI 509

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  + G+  + E VAE+M+  +    LPY +L Q Y  R +WE +  V + M    + 
Sbjct: 510 LEACVVQGNTSMAELVAEKMVMQKSRLSLPYIVLAQIYGARCKWEKMAGVWRSMENQRVK 569

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           KV  CSW+ IKN IY F + ++ HHG    Y VL LL W+M D 
Sbjct: 570 KVHSCSWLCIKNHIYVFTSEQILHHGKGATYEVLDLLFWDMTDH 613


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/650 (34%), Positives = 375/650 (57%), Gaps = 44/650 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+D CL  +S    + +H  +    F+   ++ NR +D+Y +    DD  +LFD +PQ
Sbjct: 19  AKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQ 78

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  +WN  +  L KS  LD A ++F  +PEPD  SWNSM+SG+A     + +LE F KM
Sbjct: 79  RNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKM 138

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +    + ++F   LS  +       G Q+H  + +S  S ++V +G++LIDMY K G 
Sbjct: 139 HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYS-TDVYMGSALIDMYSKCGS 197

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M E ++++WNSLI+    +G    AL+ F  M  SG  PDE T++ V++A
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLD------ 308
           C  L  L +G Q+ A  VK     + +VL +A +D+++KC+++ ++ R+F+++       
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 309 -----------------RWDYAVI--------NVMISTYGRYGFGEVALELFQLMLREDI 343
                            R+ ++ +        N +I+ Y + G  E AL LF+L+ RE I
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD------SNAVVASSLMEMYAKTGS 396
            PT +T   +LS+   +  +  G Q H+  +K GF+      S+  V +SL++MY K GS
Sbjct: 378 WPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGS 437

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           I+  + +F K+ +RD VSWN I++G  QNG  AE L +F ++L  G  PD +T+  VL A
Sbjct: 438 IEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCA 497

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G V++G   F +M EE+G++P ++HY C++DLL +AG L +A ++   MP  P   
Sbjct: 498 CSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAV 556

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           +W S+L A  ++G++++ ++ AE+++++   +  PY LL+  YA  GRW  +VRV+K+MR
Sbjct: 557 VWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMR 616

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + G+ K  GCSWI +++R++ F   +  H   ++IY VL++LT +M+  G
Sbjct: 617 QQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVG 666



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 176/373 (47%), Gaps = 40/373 (10%)

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           Y P+    + ++++C + R+    + V A  +   F     + +  ID++ KC+ L+D+ 
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 302 RLFEQLDR-----W--------------------------DYAVINVMISTYGRYGFGEV 330
           +LF+++ +     W                          D    N M+S + ++   E 
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           +LE F  M RED    E++    LS+   +  +  G+Q H++  KS + ++  + S+L++
Sbjct: 131 SLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K GS+  + E+F  + +R+LV+WN+++    QNG A+E L+VF  +++ GL PD +T
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           LA+V+ AC     + +G+ + + + +             ++D+  +  ++ +A  +   M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMM--DLQLPSPLPYSLLTQAYAMRGRWEA 567
                 SI   +   S + G  +     A R M   +   + + ++ L   Y   G  E 
Sbjct: 311 ------SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEE 364

Query: 568 IVRVKKVMRKNGI 580
            +R+ +++++  I
Sbjct: 365 ALRLFRLLKRESI 377


>gi|297601149|ref|NP_001050436.2| Os03g0435200 [Oryza sativa Japonica Group]
 gi|255674619|dbj|BAF12350.2| Os03g0435200 [Oryza sativa Japonica Group]
          Length = 594

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 326/551 (59%), Gaps = 5/551 (0%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++S  S L+  C S  +   A  +H HL K        +L N     Y R G +   + +
Sbjct: 8   TISTLSALLAGCASLST---AAALHAHLLKSSRLFRPVFLANCLAAAYCRLGAAPSAVAV 64

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
               P+ N  S NI L  +LKS +L +A ++FDE+P+ D V++NSM+SGY   G ++ AL
Sbjct: 65  LRHAPEPNIFSRNILLGAMLKSRDLLSARRLFDEMPDRDAVAYNSMMSGYIDGGRNNEAL 124

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +   M   GVRPSGFTFSI+LS V  A HG Q+H + +R   +  N V+GN+LI+MY +
Sbjct: 125 SLVWTMLEAGVRPSGFTFSIILSAVRVARHGVQVHAAAVRHCFAHQNSVVGNALINMYRR 184

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           +G+L YA  VF +M   DI+SWNS++S   + G      + F  +R  G   DE ++S V
Sbjct: 185 VGLLEYAVQVFWSMNGHDIVSWNSVMSVYRDDGQRRQVFECFRMIRSHGLFFDECSLSTV 244

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC    +  KG Q+    VK+G L NS++ SA I L    +RL D+V LF+ +  WD 
Sbjct: 245 LSACIDAEDSSKGDQLLTHCVKMGLLRNSLICSAVIGLLCASDRLADAVYLFKGMATWDS 304

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSM 371
              N MIS Y R G  E AL LF + L+  I PT FT + VL  S     VE G+Q H++
Sbjct: 305 ETCNAMISGYARSGLMEQALGLFTMALQNGILPTGFTFASVLRWSSCFGLVEQGTQIHAL 364

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G + + ++A++L++MY K  S+  + +IF ++  +DLV WNT+++GL+ NGR  E 
Sbjct: 365 IFKLGLEDDLIIATALVDMYCKLASLKHAKKIFSRVSFKDLVLWNTMIIGLSHNGRGKEA 424

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L VF ++L+  + PDRITL+ VL AC++ G V++G+ + S  +++Y ++PG EHY C++D
Sbjct: 425 LQVFRQMLKCNIQPDRITLSGVLSACSFEGLVNEGIKMVSLFEDKYHIVPGVEHYTCVVD 484

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +L +AG LG+A+D   +   +   +   ++L AS I  D ++ E +AE+M  L+  S LP
Sbjct: 485 MLSRAGMLGEAVDFVESKLQKCIVAALSNVLEASLIKRDFRMAELIAEKMTKLKPRSSLP 544

Query: 552 YSLLTQAYAMR 562
           Y +L Q+Y  R
Sbjct: 545 YVVLAQSYGAR 555


>gi|53370717|gb|AAU89212.1| PPR repeat containing protein [Oryza sativa Japonica Group]
 gi|108709006|gb|ABF96801.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 623

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 326/551 (59%), Gaps = 5/551 (0%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++S  S L+  C S  +   A  +H HL K        +L N     Y R G +   + +
Sbjct: 8   TISTLSALLAGCASLST---AAALHAHLLKSSRLFRPVFLANCLAAAYCRLGAAPSAVAV 64

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
               P+ N  S NI L  +LKS +L +A ++FDE+P+ D V++NSM+SGY   G ++ AL
Sbjct: 65  LRHAPEPNIFSRNILLGAMLKSRDLLSARRLFDEMPDRDAVAYNSMMSGYIDGGRNNEAL 124

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +   M   GVRPSGFTFSI+LS V  A HG Q+H + +R   +  N V+GN+LI+MY +
Sbjct: 125 SLVWTMLEAGVRPSGFTFSIILSAVRVARHGVQVHAAAVRHCFAHQNSVVGNALINMYRR 184

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           +G+L YA  VF +M   DI+SWNS++S   + G      + F  +R  G   DE ++S V
Sbjct: 185 VGLLEYAVQVFWSMNGHDIVSWNSVMSVYRDDGQRRQVFECFRMIRSHGLFFDECSLSTV 244

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC    +  KG Q+    VK+G L NS++ SA I L    +RL D+V LF+ +  WD 
Sbjct: 245 LSACIDAEDSSKGDQLLTHCVKMGLLRNSLICSAVIGLLCASDRLADAVYLFKGMATWDS 304

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSM 371
              N MIS Y R G  E AL LF + L+  I PT FT + VL  S     VE G+Q H++
Sbjct: 305 ETCNAMISGYARSGLMEQALGLFTMALQNGILPTGFTFASVLRWSSCFGLVEQGTQIHAL 364

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G + + ++A++L++MY K  S+  + +IF ++  +DLV WNT+++GL+ NGR  E 
Sbjct: 365 IFKLGLEDDLIIATALVDMYCKLASLKHAKKIFSRVSFKDLVLWNTMIIGLSHNGRGKEA 424

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L VF ++L+  + PDRITL+ VL AC++ G V++G+ + S  +++Y ++PG EHY C++D
Sbjct: 425 LQVFRQMLKCNIQPDRITLSGVLSACSFEGLVNEGIKMVSLFEDKYHIVPGVEHYTCVVD 484

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +L +AG LG+A+D   +   +   +   ++L AS I  D ++ E +AE+M  L+  S LP
Sbjct: 485 MLSRAGMLGEAVDFVESKLQKCIVAALSNVLEASLIKRDFRMAELIAEKMTKLKPRSSLP 544

Query: 552 YSLLTQAYAMR 562
           Y +L Q+Y  R
Sbjct: 545 YVVLAQSYGAR 555


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/652 (34%), Positives = 367/652 (56%), Gaps = 43/652 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+D C+  KS   A+ IH  + K  F++  ++ NR +D Y + G  +D  ++FD +PQ
Sbjct: 23  AKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQ 82

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  S+N  L  L K   LD A  VF  +PEPD  SWN+M+SG+A     + AL  F  M
Sbjct: 83  RNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDM 142

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +    + ++F   LS  +       G QIH ++I     L +V +G++L+DMY K GV
Sbjct: 143 HSEDFVLNEYSFGSALSACAGLTDLNMGIQIH-ALISKSRYLLDVYMGSALVDMYSKCGV 201

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  M   +I+SWNSLI+    +G    AL+ F  M  +G  PDE T++ V++A
Sbjct: 202 VACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSA 261

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQL------- 307
           C     + +G Q+ A  VK     N +VL +A +D+++KC R+ ++  +F+++       
Sbjct: 262 CASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVS 321

Query: 308 ----------------------DRWDYAVI--NVMISTYGRYGFGEVALELFQLMLREDI 343
                                 +  +  V+  N +I+ Y + G  E A+ LF L+ RE I
Sbjct: 322 ETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI 381

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTGS 396
            PT +T   +L++   +  ++ G Q H+  +K GF      +S+  V +SL++MY K G 
Sbjct: 382 WPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGM 441

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++    +F ++ +RD+VSWN +++G  QNG     L++F ++L  G  PD +T+  VL A
Sbjct: 442 VEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSA 501

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G V++G   F +M+ E G+ P ++H+ C++DLL +AG L +A D+  TMP QP   
Sbjct: 502 CSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNV 561

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           +W S+L A  ++G+++L + VAE++M++   +  PY LL+  YA  GRW+ +VRV+K MR
Sbjct: 562 VWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMR 621

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G+ K  GCSWI I++R++ F   + +H   + I+LVL+ LT +M+  G V
Sbjct: 622 QRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYV 673



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 166/370 (44%), Gaps = 40/370 (10%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D    + ++++C + ++    +++ A  +K  F S   + +  +D + KC   ED+ ++F
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 305 E---QLDRWDYAVI----------------------------NVMISTYGRYGFGEVALE 333
           +   Q + + Y  +                            N M+S + ++   E AL 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F  M  ED    E++    LS+   +  +  G Q H++  KS +  +  + S+L++MY+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +  +   F  +  R++VSWN+++    QNG A + L+VF  +++ G+ PD ITLA+
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           V+ AC     + +G+ + + + +             ++D+  +  ++ +A  +   MP +
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMM--DLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
              S        S + G  +     A R+M  ++   + + ++ L   Y   G  E  VR
Sbjct: 318 NVVS------ETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVR 371

Query: 571 VKKVMRKNGI 580
           +  ++++  I
Sbjct: 372 LFLLLKRESI 381



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 10/132 (7%)

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
           GR+GF  V   + +L   +     +   SCV S   I       + H+  IK+ F S   
Sbjct: 2   GRHGF--VQKLVGELCFLDSSPFAKLLDSCVRSKSGID----ARRIHARIIKTQFSSEIF 55

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + + L++ Y K G  + + ++F ++ +R+  S+N ++  LT+ G+  E  +VF+ + E  
Sbjct: 56  IQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPE-- 113

Query: 443 LPPDRITLAAVL 454
             PD+ +  A++
Sbjct: 114 --PDQCSWNAMV 123


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/643 (33%), Positives = 362/643 (56%), Gaps = 60/643 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+D CL  +S    + +H  +    F+   ++ NR +D+Y +    DD  +LFD +PQ
Sbjct: 19  AKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQ 78

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  +WN  +  L KS  LD A ++F  +PEPD  SWNSM+SG+A     + +LE F KM
Sbjct: 79  RNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKM 138

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +    + ++F   LS  +       G Q+H  + +S  S ++V +G++LIDMY K G 
Sbjct: 139 HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYS-TDVYMGSALIDMYSKCGS 197

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M E ++++WNSLI+    +G    AL+ F  M  SG  PDE T++ V++A
Sbjct: 198 VACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSA 257

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLD------ 308
           C  L  L +G Q+ A  VK     + +VL +A +D+++KC+++ ++ R+F+++       
Sbjct: 258 CASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVS 317

Query: 309 -----------------RWDYAVI--------NVMISTYGRYGFGEVALELFQLMLREDI 343
                            R+ ++ +        N +I+ Y + G  E AL LF+L+ RE I
Sbjct: 318 ETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377

Query: 344 RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            PT +T   +L S                       +  V +SL++MY K GSI+  + +
Sbjct: 378 WPTHYTFGNLLKS-----------------------DIFVGNSLIDMYMKCGSIEDGSRV 414

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F K+ +RD VSWN I++G  QNG  AE L +F ++L  G  PD +T+  VL AC++ G V
Sbjct: 415 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 474

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
           ++G   F +M EE+G++P ++HY C++DLL +AG L +A ++   MP  P   +W S+L 
Sbjct: 475 EEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 533

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
           A  ++G++++ ++ AE+++++   +  PY LL+  YA  GRW  +VRV+K+MR+ G+ K 
Sbjct: 534 ACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ 593

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            GCSWI +++R++ F   +  H   ++IY VL++LT +M+  G
Sbjct: 594 PGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVG 636



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 176/373 (47%), Gaps = 40/373 (10%)

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           Y P+    + ++++C + R+    + V A  +   F     + +  ID++ KC+ L+D+ 
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 302 RLFEQLDR-----W--------------------------DYAVINVMISTYGRYGFGEV 330
           +LF+++ +     W                          D    N M+S + ++   E 
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           +LE F  M RED    E++    LS+   +  +  G+Q H++  KS + ++  + S+L++
Sbjct: 131 SLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K GS+  + E+F  + +R+LV+WN+++    QNG A+E L+VF  +++ GL PD +T
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           LA+V+ AC     + +G+ + + + +             ++D+  +  ++ +A  +   M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMM--DLQLPSPLPYSLLTQAYAMRGRWEA 567
                 SI   +   S + G  +     A R M   +   + + ++ L   Y   G  E 
Sbjct: 311 ------SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEE 364

Query: 568 IVRVKKVMRKNGI 580
            +R+ +++++  I
Sbjct: 365 ALRLFRLLKRESI 377


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/652 (34%), Positives = 367/652 (56%), Gaps = 43/652 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+D C+  KS   A+ +H  + K  F++  ++ NR +D+Y + G  +D  ++FD + Q
Sbjct: 23  AKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQ 82

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN  L  L K   LD AL +F  +PE D  SWN+M+SG+A     + AL     M
Sbjct: 83  RNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDM 142

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +    + ++F   LS  +       G QIHG + +S  SL +V +G++L+DMY K  V
Sbjct: 143 HSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL-DVYMGSALVDMYSKCRV 201

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F +M+  +I+SWNSLI+    +G    AL+ F  M   G  PDE T++ V +A
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASA 261

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWD--- 311
           C  L  + +G Q+ A  +K     N +VL +A +D+++KC R+ ++  +F+++   D   
Sbjct: 262 CASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVS 321

Query: 312 -------YAVI---------------------NVMISTYGRYGFGEVALELFQLMLREDI 343
                  YA                       N +I+ Y + G  E A+ LF L+ RE I
Sbjct: 322 ETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI 381

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTGS 396
            PT +T   +L++   +  ++ G Q H+  +K GF      DS+  V +SL++MY K G 
Sbjct: 382 WPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGL 441

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++    +F ++ +RD VSWN +++G  QNG   E L++F E+L  G  PD +T+  VL A
Sbjct: 442 VEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSA 501

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G V++G   F +M  E+G++P ++HY C++DLL +AG L +A ++  TMP +P   
Sbjct: 502 CSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAV 561

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           +W S+L A  ++G++ L + VAER++++   +  PY LL+  YA  GRW+ +VRV+K MR
Sbjct: 562 VWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMR 621

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G+ K  GCSWI I++ ++ F   + +H   + IYL+L++LT +M+  G V
Sbjct: 622 QMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYV 673



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 169/370 (45%), Gaps = 40/370 (10%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D    + +++ C K +++ + + V A  +K  F S   + +  +D++ KC  LED+ ++F
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLM------------------------LR 340
           + + + +    N ++    ++G  + AL LF+ M                        LR
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 341 -------EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
                  ED    E++    LS+   +  +  G Q H +  KS +  +  + S+L++MY+
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   + S+   F  +D R++VSWN+++    QNG A + L+VF  ++  G+ PD ITLA+
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           V  AC     + +G+ + + + +             ++D+  +  ++ +A  +   MP +
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMM--DLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
                 + +   S + G  K +   A R+M  ++   + + ++ L   Y   G  E  VR
Sbjct: 318 ------DVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVR 371

Query: 571 VKKVMRKNGI 580
           +  ++++  I
Sbjct: 372 LFLLLKRESI 381


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/650 (34%), Positives = 363/650 (55%), Gaps = 44/650 (6%)

Query: 19  SQLIDRCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           ++L+D C+  K S  + + +H  + K GF+   ++ NR +D YS+ G+ +D  Q+FD++P
Sbjct: 23  AKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMP 82

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           Q+N  +WN  + GL K   LD A  +F  +PE D  +WNSM+SG+A     + AL  F+ 
Sbjct: 83  QRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAM 142

Query: 138 MQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M  +G   + ++F+ +LS  S       G Q+H S+I     LS+V +G++L+DMY K G
Sbjct: 143 MHKEGFVLNEYSFASVLSACSGLNDMNKGVQVH-SLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  M + +++SWNSLI+    +G    ALD F  M  S   PDE T++ VI+
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNRLEDS--------VR--- 302
           AC  L  +  G++V    VK   L N I+LS A +D+++KC+R++++        +R   
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 303 --------------------LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
                               +F ++   +    N +I+ Y + G  E AL LF L+ RE 
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTG 395
           + PT ++ + +L +   +  +  G Q H   +K GF      + +  V +SL++MY K G
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            ++    +F K+ +RD VSWN +++G  QNG   E L++F E+LE G  PD IT+  VL 
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLS 501

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC + GFV++G   FS+M  ++GV P  +HY C++DLL +AG L +A  +   MP QP  
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDS 561

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            IW S+L A  ++ ++ L + VAE++++++  +  PY LL+  YA  G+WE ++ V+K M
Sbjct: 562 VIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSM 621

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           RK G+ K  GCSWI I+   + F   +  H   ++I+ +L +L  EM  E
Sbjct: 622 RKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPE 671


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/650 (34%), Positives = 359/650 (55%), Gaps = 44/650 (6%)

Query: 19  SQLIDRCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           ++L+D C+  K S    + +H  + K GF+   ++ NR +D Y++ G+ +D  QLFD++P
Sbjct: 23  AKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMP 82

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           Q+N  +WN  + GL K   LD A  +F  +PE D  +WNSM+SG+A     + AL  F+ 
Sbjct: 83  QRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAM 142

Query: 138 MQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M  +G   + +TF+  LS  S       G QIH S+I     LS+V +G++L+DMY K G
Sbjct: 143 MHKEGFVLNEYTFASGLSACSGLNDMNRGVQIH-SLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  M + +++SWNSLI+    +G    AL  F  M  S   PDE T++ VI+
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNRLEDS--------VR--- 302
           AC  L  +  G++V A  VK+  L N I+LS A +D+++KC+R++++        +R   
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 303 --------------------LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
                               +F ++   +    N +I+ Y + G  E AL LF L+ RE 
Sbjct: 322 AETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTG 395
           + PT +T + +L +   +  +  G Q H   +K GF      + +  V +SL++MY K G
Sbjct: 382 VCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            ++    +F K+ +RD VSWN +++G  QNG   E L++F E+L+ G  PD IT+  VL 
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLS 501

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC + GFV++G   FS+M  ++GV P  +HY C++DLL +AG L +A  I   MP QP  
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDS 561

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            IW S+L A  ++ ++ L + VAE++ +++  +  PY LL+  YA  G+W   + V+K+M
Sbjct: 562 VIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLM 621

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           RK G+ K  GCSWI I    + F   +  H   ++I+ +L +L  EM  +
Sbjct: 622 RKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMRQK 671


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/640 (34%), Positives = 352/640 (55%), Gaps = 37/640 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   ++   AK +H  + K   N  T+L N  ++ YS+ G       +FD++PQ N  SW
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV- 143
           N  L    KS +L T  ++F  +P  D VSWNS+ISGY   G    A++ ++ M   GV 
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 144 RPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
             +  TFS +L  VSS  C   G+QIHG +++ G   + V +G+SL+DMY K+G++  A 
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFG-AYVFVGSSLVDMYAKMGLVSVAS 193

Query: 201 GVF-------------------------------LNMEELDIISWNSLISGCFNSGYGEL 229
            VF                                 M+E D ISW ++I+G   +G    
Sbjct: 194 QVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A+D F  MR  G + D+YT   V+ AC  LR L +GK++  L ++ G+  N  V SA +D
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVD 313

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ KC  +  +  +F+++   +      M+  YG+ GF E A+ +F  M R  I P +FT
Sbjct: 314 MYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFT 373

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L  V+SS   +  +E G+QFH  A+ SG  S   V+++L+ +Y K GSI+ S ++F ++ 
Sbjct: 374 LGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
            RD VSW  ++ G  Q G+A ET+D+FE +L +GL PD +T  AVL AC+  G V++G  
Sbjct: 434 FRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQ 493

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F +M +++G++P  +HY C+IDL  +AG+L +A +  + MPF P    W ++L +  +Y
Sbjct: 494 YFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLY 553

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           G+ ++ +  AE +++L   +P  Y LL+  YA +G+W  + ++++ MR+ G  K  G SW
Sbjct: 554 GNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSW 613

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           I  K+++Y F+A +       +IY  L  L  +M +EG V
Sbjct: 614 IKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYV 653


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/652 (33%), Positives = 365/652 (55%), Gaps = 43/652 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+D C+  +S   A+++HG L +  F    ++ NR +D+Y + G  D   ++FD + +
Sbjct: 28  AKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSE 87

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  S+N  +  L++   +D +  +F  +PE D  SWNSMI+G+A     + AL+ F +M
Sbjct: 88  RNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRM 147

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                  + ++F   LS  S       G QIHG + +S  SL +V +G+ LID Y K G+
Sbjct: 148 HRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSL-DVFMGSGLIDFYSKCGL 206

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  MEE +++SWN LI+    +G    AL+ F  M   G+ PDE T++ V++A
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSA 266

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLD------ 308
           C  L    +G Q+ A  VK     N ++L +A +D+++KC R+ ++  +F+++       
Sbjct: 267 CATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326

Query: 309 -----------------RWDYAVI--------NVMISTYGRYGFGEVALELFQLMLREDI 343
                            R  +A I        N +I+ Y + G  E AL LF+++ RE +
Sbjct: 327 ETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESV 386

Query: 344 RPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTGS 396
            PT +T   +L +S  +  +E G Q HS  +K GF      + +  V +SL++MY K GS
Sbjct: 387 CPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGS 446

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++    +F  + ++D VSWNT+++G  QNG   E L++F+++LE G  PD +T+   L A
Sbjct: 447 VEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCA 506

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G V++G   F +M +E+G++P ++HY C++DLL +AG L +A D+  +MP QP   
Sbjct: 507 CSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAV 566

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           +W S+L A  ++ ++ L + VAE++ ++   S  PY LL   Y+  GRW   V V+K+MR
Sbjct: 567 VWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMR 626

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G+ K  GCSWI I++ ++ F   + +H   ++IY +L+LLT  M   G V
Sbjct: 627 RRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYV 678



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 162/370 (43%), Gaps = 40/370 (10%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D    + +++ C KLR+    + V    ++  F     + +  ID++ KC  L+ + ++F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 305 EQLDRWDYAVINVMISTYGRYGFG-------------------------------EVALE 333
           +++   +    N +IST  R+GF                                E AL+
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F  M R+D    +++    LS+   +  ++ G+Q H +  KS +  +  + S L++ Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +  +  +F  ++++++VSWN ++    QNG A E L+ F  + E G  PD +TLA+
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           V+ AC       +G+ + + + +             ++D+  + G++ +A  +   MP +
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMM--DLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
              S        + + G  K     A R M   ++    + ++ L   Y   G  E  + 
Sbjct: 323 NAVS------ETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALG 376

Query: 571 VKKVMRKNGI 580
           + +++++  +
Sbjct: 377 LFRMLKRESV 386


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/661 (33%), Positives = 369/661 (55%), Gaps = 44/661 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S+L+++C   +S      +H  + K  F + T++ NR +D+Y + G  D   +LFD + +
Sbjct: 23  SKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLE 82

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN  +    KS  LD A+ +F+++P+ D  SWNSMISG+   G  D AL  F++M
Sbjct: 83  RNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQM 142

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G   + ++F   LS  +       G QIH  + RS   LS+V +G++L+DMY K G 
Sbjct: 143 HGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNY-LSDVYMGSALVDMYSKCGR 201

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           + YA  VF  M     +SWNSLI+    +G  + AL  F  M   G  PDE T++ V++A
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFE--------- 305
           C  +  + +G+Q+ A  VK     N ++L +A +D+++KCNR+ ++  +F+         
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321

Query: 306 --------------QLDRW--------DYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
                         ++ R+        D    N +I+   + G  E AL LF+L+ RE +
Sbjct: 322 ETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESV 381

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTGS 396
            PT +T   +L++   +  ++ G Q HS  +K GF      DS+  V +SL++MY K GS
Sbjct: 382 WPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGS 441

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +++   +F  + ++D VSWN +++G  QNG   + L+VF ++LE G  PD +T+  VL A
Sbjct: 442 VENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCA 501

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G +D+G   F +M  ++G+MP ++HY C++DLL +AG L +A ++   M  QP   
Sbjct: 502 CSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAI 561

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           +W S+L A  ++ +++L E V ++++++   +  PY LL+  YA    W+ +VRV+K+MR
Sbjct: 562 VWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMR 621

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV-YLECDKL 635
           + G+ K  GCSWI I+  +  F   + +H   ++IY+VLR +  +M+  G V Y+  ++ 
Sbjct: 622 QRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVPYVGSNEF 681

Query: 636 D 636
           D
Sbjct: 682 D 682



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 127/259 (49%), Gaps = 32/259 (12%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC---------- 294
           D    S ++N C + R+     +V A  +K  F S + + +  ID++ KC          
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 295 NR---------------------LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           +R                     L+D+V +FE++ + D    N MIS + ++G  + AL 
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F  M        E++    LS+   +  ++ GSQ HS+  +S + S+  + S+L++MY+
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYS 197

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G ++ +  +F ++  R  VSWN+++    QNG   E L +F E+++ G+ PD +TLA+
Sbjct: 198 KCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLAS 257

Query: 453 VLLACNYGGFVDKGMLVFS 471
           V+ AC     + +G  + +
Sbjct: 258 VVSACATISAIKEGQQIHA 276


>gi|302142723|emb|CBI19926.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/393 (48%), Positives = 269/393 (68%), Gaps = 6/393 (1%)

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S +I  C  L++LD  K V A  +KVGF +++ + +  +DLF +  R  D   +F+++ +
Sbjct: 20  SNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLFGELERARD---VFDEMPK 76

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC--VLSSIPIP-PVEHGS 366
            D    N MIS Y  +G  + A   F  M +  IRP+ FT S   VLS++ I  PV+ GS
Sbjct: 77  RDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLIVLSAVSILLPVDQGS 136

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q HS+ +KSG +S+ +VASSL+EMYAK G IDS+ + F K+  RDL+SWNT++MGL  NG
Sbjct: 137 QIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNG 196

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           R ++ L++F+ELL  G PPD ITLA VLLACN GG VD+G+ +FS+M++EYGV+P  EHY
Sbjct: 197 RVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHY 256

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           ACI+D++ + G+L +A+DI   MP +P   IW S+L A  IYGD++ TE VAER+M+L+ 
Sbjct: 257 ACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEP 316

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            S LPY +L QAY MRGRWE++VRV++ M++ G+ KV GCSWIGIKN ++ F   +L H 
Sbjct: 317 QSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWIGIKNHVFVFKENQLLHI 376

Query: 607 GGQKIYLVLRLLTWEMEDEGCVYLECDKLDVEG 639
           GG+ IY +LRLL  E+ED+G    + DK+   G
Sbjct: 377 GGKDIYFILRLLIQEIEDDGYASQQYDKVRAVG 409



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 172/312 (55%), Gaps = 42/312 (13%)

Query: 1   MSSYLKKAHVNKA-SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL 59
           M  +LKKAH   A SLSY S LI+ C   KS D+AK +H  L K+GFN HT+LGNRCLDL
Sbjct: 1   MQPFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDL 60

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           +                                    L+ A  VFDE+P+ DVVSWN+MI
Sbjct: 61  FG----------------------------------ELERARDVFDEMPKRDVVSWNTMI 86

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFS--ILLSTVS---SACHGKQIHGSMIRSG 174
           SGY S G  D A   FS+MQ  G+RPSGFT+S  I+LS VS       G QIH  +++SG
Sbjct: 87  SGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLIVLSAVSILLPVDQGSQIHSLVVKSG 146

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
           L  S+V++ +SL++MY K G++  A   F  +   D+ISWN++I G   +G    AL+ F
Sbjct: 147 LE-SDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIF 205

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSK 293
             +   G  PDE T++ V+ AC     +D+G  +F ++  + G +      +  +D+ S+
Sbjct: 206 KELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSR 265

Query: 294 CNRLEDSVRLFE 305
             +L++++ + E
Sbjct: 266 GGKLKEAMDIVE 277



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 164/323 (50%), Gaps = 16/323 (4%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           + K +H  +I+ G + ++  LGN  +D++G+L     A  VF  M + D++SWN++ISG 
Sbjct: 34  YAKFVHAQLIKVGFN-THTFLGNRCLDLFGEL---ERARDVFDEMPKRDVVSWNTMISGY 89

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTIS--IVINACTKLRNLDKGKQVFALSVKVGFLS 279
            + G  + A   F  M+ +G  P  +T S  IV++A + L  +D+G Q+ +L VK G  S
Sbjct: 90  VSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLIVLSAVSILLPVDQGSQIHSLVVKSGLES 149

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           + IV S+ +++++K   ++ +++ F ++   D    N MI      G    ALE+F+ +L
Sbjct: 150 DVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELL 209

Query: 340 REDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
                P E TL+ VL +  +   V+ G S F SM  + G        + +++M ++ G +
Sbjct: 210 IGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKL 269

Query: 398 DSSTEI--FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
             + +I   +  +   L+ W +++      G    T  V E ++E  L P   +L  ++L
Sbjct: 270 KEAMDIVELMPHEPSGLI-WGSLLCACEIYGDLRFTERVAERVME--LEPQS-SLPYLVL 325

Query: 456 ACNY--GGFVDKGMLVFSAMKEE 476
           A  Y   G  +  + V  AMKE+
Sbjct: 326 AQAYEMRGRWESLVRVRRAMKEK 348


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/649 (33%), Positives = 348/649 (53%), Gaps = 39/649 (6%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           YC+ L+  C    +F  AK +H H+ K      T+L N  +  Y++ G+     ++FD++
Sbjct: 12  YCA-LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQM 70

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P  N  SWN  L    K   +     +FD +P  D VSWNS+ISGYA CG    +++ ++
Sbjct: 71  PHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 137 KMQLQ--GVRPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            M         +  TFS LL   S   C   G+QIHG +++ G  +S V +G+ L+DMY 
Sbjct: 131 LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGF-MSYVFVGSPLVDMYS 189

Query: 192 KLGVLYYAFGVF-------------------------------LNMEELDIISWNSLISG 220
           K+G++  A  VF                                 M E D ISW S+I+G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +G    A+D F  M+      D+YT   V+ AC  +  L +GKQV A  ++  +  N
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V SA +D++ KC  ++ +  +F+++   +      M+  YG+ G+ E A++ F  M +
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
             I P +FTL  V+SS   +  +E G+QFH+ A+ SG  S   V+++L+ +Y K GSI+ 
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIED 429

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           S  +F ++  +D V+W  ++ G  Q G+A ET+ +FE +L  GL PD++T   VL AC+ 
Sbjct: 430 SHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSR 489

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G V+KG  +F +M  E+G++P ++HY C+IDL  +AG++ +A +  + MPF P    W 
Sbjct: 490 AGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWA 549

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           ++L +   YG++ + +  AE +M+L   +   Y LL+  YA +G+WE + R++K MR  G
Sbjct: 550 TLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKG 609

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + K  GCSWI  KN+++ F+A +  +    +IY  L  L ++M  EG V
Sbjct: 610 LRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYV 658


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/623 (34%), Positives = 348/623 (55%), Gaps = 54/623 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L DR +        K +H    K GF     +G   +D+Y              
Sbjct: 99  LKVCGCLFDRIV-------GKQVHCQCIKCGFVEDVSVGTSLVDMY-------------- 137

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                            +K+++++   +VFDE+   +VVSW S+++GY   G ++ AL++
Sbjct: 138 -----------------MKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           FS+MQL+G++P+ FTF+ +L  +++      G Q+H  +I+SGL  S + +GNS+++MY 
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD-STIFVGNSMVNMYS 239

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K  ++  A  VF +ME  + +SWNS+I+G   +G    A + FY MR  G    +   + 
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT 299

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           VI  C  ++ +   KQ+    +K G   +  + +A +  +SKC+ ++D+ +LF  +    
Sbjct: 300 VIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM---- 355

Query: 312 YAVINV-----MISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSS--IPIPPVE 363
           + V NV     +IS Y + G  + A+ LF  M RE+ + P EFT S VL++   P   VE
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVE 415

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G QFHS +IKSGF +   V+S+L+ MYAK G+I+S+ E+F +   RDLVSWN+++ G  
Sbjct: 416 QGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYA 475

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           Q+G   ++L +FEE+  + L  D IT   V+ AC + G V++G   F  M ++Y ++P  
Sbjct: 476 QHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTM 535

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY+C++DL  +AG L KA+D+ + MPF  G +IW ++L A  ++ +V+L E  AE+++ 
Sbjct: 536 EHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLIS 595

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           LQ      Y LL+  YA  G W+   +V+K+M    + K  G SWI +KN+ ++F AG+L
Sbjct: 596 LQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDL 655

Query: 604 QHHGGQKIYLVLRLLTWEMEDEG 626
            H    +IYL L  L+  ++D G
Sbjct: 656 SHPQSDRIYLKLEELSIRLKDAG 678



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 231/496 (46%), Gaps = 43/496 (8%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS--- 158
           ++FDE P+  +   N ++  ++    +  AL +F  ++  G    G + S +L       
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GKQ+H   I+ G  + +V +G SL+DMY K   +     VF  M   +++SW SL+
Sbjct: 107 DRIVGKQVHCQCIKCGF-VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G   +G  E AL  F  M+  G  P+ +T + V+        ++KG QV  + +K G  
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           S   V ++ ++++SK   + D+  +F+ ++  +    N MI+ +   G    A ELF  M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 339 LREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E ++ T+   + V+     I  +    Q H   IK+G D +  + ++LM  Y+K   I
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEI 345

Query: 398 DSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLL 455
           D + ++F  +   +++VSW  I+ G  QNGR    +++F ++  EEG+ P+  T ++VL 
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLN 405

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC                     V  G++ ++C I    ++G             F    
Sbjct: 406 AC---------------AAPTASVEQGKQFHSCSI----KSG-------------FSNAL 433

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            +  +++   A  G+++    V +R +D  L S   ++ +   YA  G  +  +++ + M
Sbjct: 434 CVSSALVTMYAKRGNIESANEVFKRQVDRDLVS---WNSMISGYAQHGCGKKSLKIFEEM 490

Query: 576 RKNGINKVTGCSWIGI 591
           R   + ++ G ++IG+
Sbjct: 491 RSKNL-ELDGITFIGV 505



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 3/174 (1%)

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE-FTLSCVLSSIP 358
           S +LF++  +   +  N ++  + R    + AL LF L LR    PT+  +LSCVL    
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLF-LGLRRSGSPTDGSSLSCVLKVCG 103

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +     G Q H   IK GF  +  V +SL++MY KT S++    +F ++  +++VSW +
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           ++ G  QNG   + L +F ++  EG+ P+  T AAVL      G V+KG+ V +
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/629 (33%), Positives = 349/629 (55%), Gaps = 45/629 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +     K IHG+L KLG++   +  N  +D+Y++ G              
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG-------------- 307

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +L  A+ VF++I +PD+VSWN++I+G     + + ALE+  +M
Sbjct: 308 -----------------DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +  G+ P+ FT    LS+   AC G       +Q+H S+++  +  S++ +   L+DMY 
Sbjct: 351 KRSGICPNIFT----LSSALKACAGMGLKELGRQLHSSLMKMDME-SDLFVSVGLVDMYS 405

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K  +L  A   F  + E D+I+WN++ISG         AL  F  M   G   ++ T+S 
Sbjct: 406 KCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLST 465

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ +   L+ +   +QV  LSVK GF S+  V+++ ID + KC+ +ED+ R+FE+    D
Sbjct: 466 ILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGD 525

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
                 MI+ Y +YG GE AL+LF  M   +++P  F  S +L++   +   E G Q H 
Sbjct: 526 LVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHV 585

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +K GF  +    +SL+ MYAK GSID +   F +L +R +VSW+ ++ GL Q+G   +
Sbjct: 586 HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQ 645

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +F ++L+EG+ P+ ITL +VL ACN+ G V +  L F +M+E +G  P +EHYAC+I
Sbjct: 646 ALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMI 705

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG++ +A+++ + MPF+   S+W ++L A+ I+ DV+L    AE +  L+     
Sbjct: 706 DLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSG 765

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            + LL   YA  G+WE +  V+++MR + + K  G SWI +K+++YTF  G+  H+  Q+
Sbjct: 766 THVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQE 825

Query: 611 IYLVLRLLTWEMEDEGCV-YLECDKLDVE 638
           IY  L  L+  M+  G V  +E D  DVE
Sbjct: 826 IYAKLDELSDLMDKAGYVPMVEIDLHDVE 854



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 233/454 (51%), Gaps = 37/454 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + K +    S+SY S+L+ +C + KS      IH H+ K G +    + N  ++LYS   
Sbjct: 47  IDKGNFTPTSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS--- 102

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                       K  N   A K+ DE  EPD+VSW+++ISGYA 
Sbjct: 103 ----------------------------KCRNFGYARKLVDESSEPDLVSWSALISGYAQ 134

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVV 181
            G    AL  F +M L GV+ + FTFS +L   S V     GKQ+HG ++ SG    +V 
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFE-GDVF 193

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N+L+ MY K      +  +F  + E +++SWN+L S      +   A+  FY M  SG
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSG 253

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             P+E+++S ++NACT LR+  +GK +    +K+G+  +    +A +D+++K   L D++
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            +FE++ + D    N +I+    +   E ALEL   M R  I P  FTLS  L +   + 
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG 373

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
             E G Q HS  +K   +S+  V+  L++MY+K   ++ +   F  L ++DL++WN I+ 
Sbjct: 374 LKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIIS 433

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +Q     E L +F E+ +EG+  ++ TL+ +L
Sbjct: 434 GYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 467



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 223/443 (50%), Gaps = 36/443 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K     K +HG +   GF    ++ N  + +Y+                 
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYA----------------- 203

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K D    + ++FDEIPE +VVSWN++ S Y    +   A+ +F +M
Sbjct: 204 --------------KCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEM 249

Query: 139 QLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L G++P+ F+ S +++  +    +  GK IHG +I+ G    +    N+L+DMY K+G 
Sbjct: 250 VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW-DPFSANALVDMYAKVGD 308

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  +++ DI+SWN++I+GC    + E AL+    M+ SG  P+ +T+S  + A
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKA 368

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +   + G+Q+ +  +K+   S+  V    +D++SKC+ LED+   F  L   D    
Sbjct: 369 CAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAW 428

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIK 374
           N +IS Y +Y     AL LF  M +E I   + TLS +L S     V H   Q H +++K
Sbjct: 429 NAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 488

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SGF S+  V +SL++ Y K   ++ +  IF +    DLVS+ +++    Q G+  E L +
Sbjct: 489 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 548

Query: 435 FEELLEEGLPPDRITLAAVLLAC 457
           F E+ +  L PDR   +++L AC
Sbjct: 549 FLEMQDMELKPDRFVCSSLLNAC 571



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 179/333 (53%), Gaps = 5/333 (1%)

Query: 145 PSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  ++S LLS   T  S   G QIH  + +SGLS  +  + N LI++Y K     YA  
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLS-DDPSIRNHLINLYSKCRNFGYARK 112

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +     E D++SW++LISG   +G G  AL  F+ M   G   +E+T S V+ AC+ +++
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  GKQV  + V  GF  +  V +  + +++KC+   DS RLF+++   +    N + S 
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y +  F   A+ LF  M+   I+P EF+LS ++++   +     G   H   IK G+D +
Sbjct: 233 YVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
              A++L++MYAK G +  +  +F K+ + D+VSWN ++ G   +    + L++  ++  
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            G+ P+  TL++ L AC   G  + G  + S++
Sbjct: 353 SGICPNIFTLSSALKACAGMGLKELGRQLHSSL 385



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 31/143 (21%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS L++ C +  +F+  K +H H+ K GF    + GN  +++Y++ G+ DD  + F E+ 
Sbjct: 564 CSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT 623

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           ++  +SW                               ++MI G A  G+   AL++F++
Sbjct: 624 ERGIVSW-------------------------------SAMIGGLAQHGHGRQALQLFNQ 652

Query: 138 MQLQGVRPSGFTFSILLSTVSSA 160
           M  +GV P+  T   +L   + A
Sbjct: 653 MLKEGVSPNHITLVSVLGACNHA 675


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/632 (31%), Positives = 346/632 (54%), Gaps = 45/632 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++  +N   L + S +I  C S       + +H  +   GF +   +G     +Y++ G
Sbjct: 111 MQRTGINPDKLVFLS-VIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCG 169

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +                               L+ A +VFD +P+ DVVSWN++I+GY+ 
Sbjct: 170 S-------------------------------LENARQVFDRMPKRDVVSWNAIIAGYSQ 198

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLS 178
            G    AL +FS+MQ+ G++P+    S L+S +    H      GKQIH   IRSG+  S
Sbjct: 199 NGQPYEALALFSEMQVNGIKPNS---STLVSVMPVCAHLLALEQGKQIHCYAIRSGIE-S 254

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSM 237
           +V++ N L++MY K G +  A  +F  M   D+ SWN++I G   NS + E AL  F  M
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHE-ALAFFNRM 313

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           +  G  P+  T+  V+ AC  L  L++G+Q+   +++ GF SN +V +A +++++KC  +
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNV 373

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             + +LFE++ + +    N +IS Y ++G    AL LF  M  + I+P  F +  VL + 
Sbjct: 374 NSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPAC 433

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
                +E G Q H   I+SGF+SN VV + L+++YAK G+++++ ++F ++ ++D+VSW 
Sbjct: 434 AHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWT 493

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           T+++    +G   + L +F ++ E G   D I   A+L AC++ G VD+G+  F  MK +
Sbjct: 494 TMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSD 553

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           YG+ P  EHYAC++DLL +AG L +A  I   M  +P  ++W ++L A  I+ +++L E 
Sbjct: 554 YGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQ 613

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            A+ + +L   +   Y LL+  YA   RWE + +++K+M++ G+ K  GCS + +   + 
Sbjct: 614 AAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQ 673

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           TF  G+  H   ++IY +L +L  +M   G V
Sbjct: 674 TFLVGDRTHPQSEQIYAMLEILYEQMRKAGYV 705



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 226/427 (52%), Gaps = 15/427 (3%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIH 167
           + V W   I GY   G+ + AL ++ +MQ  G+ P    F  ++    S      G+++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
             +I  G   S+V++G +L  MY K G L  A  VF  M + D++SWN++I+G   +G  
Sbjct: 144 EDIIARGFE-SDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
             AL  F  M+ +G  P+  T+  V+  C  L  L++GKQ+   +++ G  S+ +V++  
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           +++++KC  +  + +LFE++   D A  N +I  Y        AL  F  M    I+P  
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 348 FTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            T+  VL +   +  +E G Q H  AI+SGF+SN VV ++L+ MYAK G+++S+ ++F +
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFER 382

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + K+++V+WN I+ G +Q+G   E L +F E+  +G+ PD   + +VL AC +   +++G
Sbjct: 383 MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442

Query: 467 MLVFSAMKEEYGVMPGEEHYACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             +       Y +  G E    +    +D+  + G +  A  +   MP Q   S W +++
Sbjct: 443 KQIHG-----YTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS-WTTMI 496

Query: 523 RASAIYG 529
            A  I+G
Sbjct: 497 LAYGIHG 503


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/670 (33%), Positives = 357/670 (53%), Gaps = 51/670 (7%)

Query: 1   MSSYLKKAHVNK--ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLD 58
           M+ +L   H  +  A L   S L D   S  +   A+  H  + K      T+L N  + 
Sbjct: 1   MARHLHHHHGQELVAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVS 60

Query: 59  LYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSM 118
            Y+R G   D  ++FDEIP +N  S+N  L    +    D A  +F+ IP+PD  S+N++
Sbjct: 61  TYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAV 120

Query: 119 ISGYASCG--YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRS 173
           ++  A  G  ++  AL   + M       + ++F+  LS  ++   +  G+Q+HG + RS
Sbjct: 121 VAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARS 180

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGELAL 231
             +  +V + ++L+DMY K      A  VF  M E +++SWNSLI+ C+  N   GE AL
Sbjct: 181 PHA-DDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLIT-CYEQNGPVGE-AL 237

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDL 290
             F  M  +G+SPDE T+S V++AC  L    +G+QV A  VK   L + +VL+ A +D+
Sbjct: 238 MLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDM 297

Query: 291 FSKCNR-------------------------------LEDSVRLFEQLDRWDYAVINVMI 319
           ++KC R                               +ED+  +F Q+   +    NV+I
Sbjct: 298 YAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLI 357

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGF- 377
           + Y + G  E A+ LF  + R+ I PT +T   VL++   I  ++ G Q H   +K GF 
Sbjct: 358 AAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFR 417

Query: 378 -----DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
                +S+  V +SL++MY KTGSID   ++F ++  RD VSWN +++G  QNGRA + L
Sbjct: 418 FDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDAL 477

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +FE +L     PD +T+  VL AC + G VD+G   F +M E++G+ P  +HY C++DL
Sbjct: 478 HLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDL 537

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG L +A ++ + MP +P   +W S+L A  ++ +V+L E  A R+ +L   +  PY
Sbjct: 538 LGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPY 597

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL+  YA  G+W  + RV++ M+  G++K  GCSWI I  ++  F A + +H    +I+
Sbjct: 598 VLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIH 657

Query: 613 LVLRLLTWEM 622
             LR++  EM
Sbjct: 658 NTLRIIQMEM 667


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 212/652 (32%), Positives = 346/652 (53%), Gaps = 44/652 (6%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A+L +C +  +R          K +H  + +   N  T+L N  ++ Y + G   +   +
Sbjct: 10  AALKFCCEARNRAQ-------VKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNV 62

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD IPQ N  SWN  L    K   L    +VFD +P  DVVSWNS++SGYA  G    ++
Sbjct: 63  FDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESV 122

Query: 133 EMFSKMQLQG-VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLID 188
            +++ M   G V  +  TFS +L   S+      G+QIHG + + G   S + +G+ L+D
Sbjct: 123 RVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQ-SYLFVGSPLVD 181

Query: 189 MYGKLG-----------------VLYY--------------AFGVFLNMEELDIISWNSL 217
           MY K G                 V+Y               A  +F NM E D ISW ++
Sbjct: 182 MYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTI 241

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I+G   +G  + A+D+F  M   G+  D++T   V+ AC     LD+GKQ+ A  ++  +
Sbjct: 242 ITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDY 301

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             N  V SA +D++ KC  ++ +  +F ++   +      M+  YG+ G+ E A+ +F  
Sbjct: 302 QDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCD 361

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M R +I P +FTL  V+SS   +  +E G+QFH  A+ SG      V+++L+ +Y K GS
Sbjct: 362 MQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGS 421

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++ + ++F ++  RD VSW  ++ G  Q G+A ET+ +FE +L  G+ PD +T   VL A
Sbjct: 422 LEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSA 481

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C+  G V+KG   F  M +E+ + P  +HY C+IDLL +AG+L +A +  + MPF P   
Sbjct: 482 CSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAI 541

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
            W ++L +  + G++++ +  AE +  L+  +P  Y LL+  YA +G+W+ + +++K MR
Sbjct: 542 GWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMR 601

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G+ K  G SWI  KN+++ F+A +       +IY  L  L  +M +EG V
Sbjct: 602 EMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYV 653



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 237/465 (50%), Gaps = 20/465 (4%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSF-DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           LK   VN   +++ + LI    S + F D  + IHG +FK G+ ++ ++G+  +D+Y++ 
Sbjct: 129 LKDGSVNLNRITFSTMLI--LSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKT 186

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
           G  +D  ++F+EIP+KN + +N  + GLL+   +  A ++FD +PE D +SW ++I+G  
Sbjct: 187 GFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLT 246

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNV 180
             G    A++ F +M ++G     FTF  +L+      +   GKQIH  +IR+     N+
Sbjct: 247 QNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ-DNI 305

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            +G++L+DMY K   + YA  VF  M   ++ISW +++ G   +GY E A+  F  M+ +
Sbjct: 306 FVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRN 365

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PD++T+  VI++C  L +L++G Q    ++  G +    V +A I L+ KC  LE +
Sbjct: 366 EIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHA 425

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            +LF ++   D      ++S Y ++G     + LF+ ML   I P   T   VLS+    
Sbjct: 426 HQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRA 485

Query: 361 P-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNT 417
             VE G   F  M  +          + ++++ ++ G ++ +     ++    D + W T
Sbjct: 486 GLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWAT 545

Query: 418 IMMGLTQNGR------AAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++     NG       AAE+L      LE   P   I L+++  A
Sbjct: 546 LLSSCRLNGNLEIGKWAAESL----HKLEPQNPASYILLSSIYAA 586


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 324/601 (53%), Gaps = 36/601 (5%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           ++ + +HG+  K G     ++G+  LD+Y++ G      ++F+                 
Sbjct: 133 NYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG------KIFE----------------- 169

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                     +VF E+P  +VVSW ++I+G    GY+  AL  FS+M    V    +TF+
Sbjct: 170 --------GRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFA 221

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           I L   + +    +G++IH   ++ G  +S+ V  N+L  MY K G L Y   +F  M  
Sbjct: 222 IALKACADSGALNYGREIHAQAMKKGFDVSSFV-ANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SW ++I+     G  E A+  F  MR S  SP+EYT + VI+ C  L  ++ G+Q+
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            AL + +G  ++  V ++ + +++KC +L  S  +F ++ R D    + +I+ Y + G  
Sbjct: 341 HALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHV 400

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             A EL   M  E  +PTEF L+ VLS+   +  +EHG Q H+  +  G +  A+V S+L
Sbjct: 401 SEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSAL 460

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY K GSI+ ++ IF   +  D+VSW  ++ G  ++G + E +D+FE++   GL PD 
Sbjct: 461 INMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   VL AC++ G VD G   F+AM ++Y + P +EHY C+IDLLC+AG+L  A  +  
Sbjct: 521 VTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIE 580

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MPF     +W ++LRA  ++GDV+     AER++ L+      +  L   YA +G+W  
Sbjct: 581 AMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWRE 640

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
              ++K+M+  G+ K  G SWI +K+ ++ F AG+  H  G+ IY +L LL    E   C
Sbjct: 641 AADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADC 700

Query: 628 V 628
           V
Sbjct: 701 V 701



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 254/473 (53%), Gaps = 23/473 (4%)

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F A       C+DL     ++D++ Q    I Q +    N  L+ L+K+ +L  A ++FD
Sbjct: 14  FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 73

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSAC--- 161
           ++ + D +SW ++ISGY +   S  AL +F  M+++ G+R   F    +LS    AC   
Sbjct: 74  KMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPF----ILSLAHKACGLN 129

Query: 162 ----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
               +G+ +HG  +++GL +++V +G++L+DMY K G ++    VF  M   +++SW ++
Sbjct: 130 SDVNYGELLHGYAVKTGL-VNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAI 188

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I+G   +GY + AL  F  M  S    D YT +I + AC     L+ G+++ A ++K GF
Sbjct: 189 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGF 248

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +S V +    +++KC +LE  + LFE++   D      +I+T  + G  E A++ F  
Sbjct: 249 DVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIR 308

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M   D+ P E+T + V+S    +  +E G Q H++ +  G  ++  V +S+M MYAK G 
Sbjct: 309 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 368

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           + SS+ IF ++ +RD+VSW+TI+ G +Q G  +E  ++   +  EG  P    LA+VL A
Sbjct: 369 LTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA----CIIDLLCQAGQLGKAIDI 505
           C     ++ G  + +     Y +  G EH A     +I++ C+ G + +A  I
Sbjct: 429 CGNMAILEHGKQLHA-----YVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 129/553 (23%), Positives = 249/553 (45%), Gaps = 81/553 (14%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFA---------------KTIHGHLFKLGFNAH 49
           L +A  NK +L Y S++    + + S+ FA               + IH    K GF+  
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVS 251

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           +++ N    +Y++ G  +  L LF+++  ++ +SW   +  L++                
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQ---------------- 295

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQI 166
                           G  + A++ F +M+   V P+ +TF+ ++S  ++      G+Q+
Sbjct: 296 ---------------MGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H  ++  GL+ S + + NS++ MY K G L  +  +F  M   DI+SW+++I+G    G+
Sbjct: 341 HALILHLGLAAS-LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGH 399

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
              A +    MR  G  P E+ ++ V++AC  +  L+ GKQ+ A  + +G    ++VLSA
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            I+++ KC  +E++ R+F+  +  D      MI+ Y  +G+    ++LF+ + R  +RP 
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 347 EFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             T   VLS+      V+ G + F++M+ K     +      ++++  + G +  +  + 
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI 579

Query: 405 VKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD----RITLAAVL----- 454
             +   RD V W+T++     +G         E +L+  L P+     ITLA +      
Sbjct: 580 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQ--LEPNCAGTHITLANIYASKGK 637

Query: 455 ---------LACNYGGFVDKGM-------LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
                    L  + G   + G        LVF+ +  +     GE+ Y  ++DLL    +
Sbjct: 638 WREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYN-MLDLLASRTE 696

Query: 499 LGKAIDITSTMPF 511
           L   +  T  +P+
Sbjct: 697 LADCVQETGFLPY 709


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 324/601 (53%), Gaps = 36/601 (5%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           ++ + +HG+  K G     ++G+  LD+Y++ G      ++F+                 
Sbjct: 133 NYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG------KIFE----------------- 169

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                     +VF E+P  +VVSW ++I+G    GY+  AL  FS+M    V    +TF+
Sbjct: 170 --------GRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFA 221

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           I L   + +    +G++IH   ++ G  +S+ V  N+L  MY K G L Y   +F  M  
Sbjct: 222 IALKACADSGALNYGREIHAQAMKKGFDVSSFV-ANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SW ++I+     G  E A+  F  MR S  SP+EYT + VI+ C  L  ++ G+Q+
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            AL + +G  ++  V ++ + +++KC +L  S  +F ++ R D    + +I+ Y + G  
Sbjct: 341 HALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHV 400

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             A EL   M  E  +PTEF L+ VLS+   +  +EHG Q H+  +  G +  A+V S+L
Sbjct: 401 SEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSAL 460

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY K GSI+ ++ IF   +  D+VSW  ++ G  ++G + E +D+FE++   GL PD 
Sbjct: 461 INMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   VL AC++ G VD G   F+AM ++Y + P +EHY C+IDLLC+AG+L  A  +  
Sbjct: 521 VTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIE 580

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MPF     +W ++LRA  ++GDV+     AER++ L+      +  L   YA +G+W  
Sbjct: 581 AMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWRE 640

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
              ++K+M+  G+ K  G SWI +K+ ++ F AG+  H  G+ IY +L LL    E   C
Sbjct: 641 AADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADC 700

Query: 628 V 628
           V
Sbjct: 701 V 701



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 253/473 (53%), Gaps = 23/473 (4%)

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F A       C+DL     ++D++ Q    I Q +    N  L+ L+K+ +L  A ++FD
Sbjct: 14  FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 73

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSAC--- 161
           ++ + D +SW ++ISGY +   S  AL +F  M+++ G+R   F    +LS    AC   
Sbjct: 74  KMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPF----ILSLAHKACGLN 129

Query: 162 ----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
               +G+ +HG  +++GL +++V +G++L+DMY K G ++    VF  M   +++SW ++
Sbjct: 130 SDVNYGELLHGYAVKTGL-VNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAI 188

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I+G   +GY + AL  F  M  S    D YT +I + AC     L+ G+++ A ++K GF
Sbjct: 189 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGF 248

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +S V +    +++KC +LE  + LFE++   D      +I+T  + G  E A++ F  
Sbjct: 249 DVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIR 308

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M   D+ P E+T + V+S    +  +E G Q H++ +  G  ++  V +S+M MYAK G 
Sbjct: 309 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 368

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           + SS+ IF ++ +RD+VSW+TI+ G  Q G  +E  ++   +  EG  P    LA+VL A
Sbjct: 369 LTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA----CIIDLLCQAGQLGKAIDI 505
           C     ++ G  + +     Y +  G EH A     +I++ C+ G + +A  I
Sbjct: 429 CGNMAILEHGKQLHA-----YVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/553 (23%), Positives = 248/553 (44%), Gaps = 81/553 (14%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFA---------------KTIHGHLFKLGFNAH 49
           L +A  NK +L Y S++    + + S+ FA               + IH    K GF+  
Sbjct: 192 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVS 251

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           +++ N    +Y++ G  +  L LF+++  ++ +SW   +  L++                
Sbjct: 252 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQ---------------- 295

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQI 166
                           G  + A++ F +M+   V P+ +TF+ ++S  ++      G+Q+
Sbjct: 296 ---------------MGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H  ++  GL+ S + + NS++ MY K G L  +  +F  M   DI+SW+++I+G    G+
Sbjct: 341 HALILHLGLAAS-LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGH 399

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
              A +    MR  G  P E+ ++ V++AC  +  L+ GKQ+ A  + +G    ++VLSA
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSA 459

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            I+++ KC  +E++ R+F+  +  D      MI+ Y  +G+    ++LF+ + R  +RP 
Sbjct: 460 LINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPD 519

Query: 347 EFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             T   VLS+      V+ G   F++M+ K     +      ++++  + G +  +  + 
Sbjct: 520 SVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI 579

Query: 405 VKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD----RITLAAVL----- 454
             +   RD V W+T++     +G         E +L+  L P+     ITLA +      
Sbjct: 580 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQ--LEPNCAGTHITLANIYASKGK 637

Query: 455 ---------LACNYGGFVDKGM-------LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
                    L  + G   + G        LVF+ +  +     GE+ Y  ++DLL    +
Sbjct: 638 WREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYN-MLDLLASRTE 696

Query: 499 LGKAIDITSTMPF 511
           L   +  T  +P+
Sbjct: 697 LADCVQETGFLPY 709


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/598 (32%), Positives = 331/598 (55%), Gaps = 36/598 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   ++ D  + +H  + ++G+    +  N  +D+Y + G              
Sbjct: 113 SCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMG-------------- 158

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +D A  +F+++P+ DVVSWN++ISG    G+   A+E+  +M
Sbjct: 159 -----------------RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ F  S +L   + A     G+QIHG MI++    S+  +G  L+DMY K   
Sbjct: 202 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHF 260

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M   D+I WN+LISGC + G  + A   FY +R  G   +  T++ V+ +
Sbjct: 261 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L      +QV AL+ K+GF+ ++ V++  ID + KC+ L D++R+FE+    D   +
Sbjct: 321 TASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAV 380

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  IK
Sbjct: 381 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 440

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
             F S+A   ++L+  YAK GSI+ +   F  L +R +VSW+ ++ GL Q+G     L++
Sbjct: 441 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 500

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +++EG+ P+ IT+ +VL ACN+ G VD+    F++MKE +G+   EEHY+C+IDLL 
Sbjct: 501 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLG 560

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+++ ++MPFQ   S+W ++L AS ++ D +L +  AE++  L+      + L
Sbjct: 561 RAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 620

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           L   YA  G W  + +V+K+M+ + I K    SW+ +K++++TF  G+  H   ++IY
Sbjct: 621 LANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIY 678



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 244/512 (47%), Gaps = 39/512 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H      GF +  ++ N  + +Y  FG  DD  ++FDE                     
Sbjct: 29  VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGS------------------ 70

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                       E + VSWN ++S Y        A+++F +M   G++P+ F FS +++ 
Sbjct: 71  ------------ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNA 118

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            + + +   G+Q+H  ++R G    +V   N+L+DMY K+G +  A  +F  M + D++S
Sbjct: 119 CTGSRNIDAGRQVHAMVVRMGYE-KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN+LISGC  +G+   A++    M+ SG  P+ + +S ++ AC      D G+Q+    +
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K    S+  +    +D+++K + L+D++++F+ +   D  + N +IS     G  + A  
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 297

Query: 334 LFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  + +E +     TL+ VL S+  +       Q H++A K GF  +A V + L++ Y 
Sbjct: 298 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYW 357

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   +  +  +F +    D+++  +++  L+Q       + +F E+L +GL PD   L++
Sbjct: 358 KCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 417

Query: 453 VLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +L AC      ++G  V + + K ++  M        ++    + G +  A    S++P 
Sbjct: 418 LLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDAELAFSSLP- 474

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           + G   W +++   A +G  K    +  RM+D
Sbjct: 475 ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 506



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 166/319 (52%), Gaps = 3/319 (0%)

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           M+ +GV  + F   ++L  V  A  G Q+H   + +G   S+V + N+L+ MYG  G + 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFG-SDVFVANALVAMYGGFGFMD 59

Query: 198 YAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A  VF     E + +SWN L+S    +     A+  F  M +SG  P E+  S V+NAC
Sbjct: 60  DARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 119

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           T  RN+D G+QV A+ V++G+  +    +A +D++ K  R++ +  +FE++   D    N
Sbjct: 120 TGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWN 179

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            +IS     G    A+EL   M    + P  F LS +L +       + G Q H   IK+
Sbjct: 180 ALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA 239

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             DS+  +   L++MYAK   +D + ++F  +  RDL+ WN ++ G +  GR  E   +F
Sbjct: 240 NADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIF 299

Query: 436 EELLEEGLPPDRITLAAVL 454
             L +EGL  +R TLAAVL
Sbjct: 300 YGLRKEGLGVNRTTLAAVL 318



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           MR  G   +E+ + +V+  C     L  G QV A+++  GF S+  V +A + ++     
Sbjct: 1   MRAEGVCCNEFALPVVLK-CVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 297 LEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           ++D+ R+F++      AV  N ++S Y +      A+++F  M+   I+PTEF  SCV++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 356 SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +      ++ G Q H+M ++ G++ +   A++L++MY K G +D ++ IF K+   D+VS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           WN ++ G   NG     +++  ++   GL P+   L+++L AC   G  D G  +   M
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 236


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 195/598 (32%), Positives = 331/598 (55%), Gaps = 36/598 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   ++ D  + +H  + ++G+    +  N  +D+Y + G              
Sbjct: 206 SCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMG-------------- 251

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +D A  +F+++P+ DVVSWN++ISG    G+   A+E+  +M
Sbjct: 252 -----------------RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ F  S +L   + A     G+QIHG MI++    S+  +G  L+DMY K   
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHF 353

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M   D+I WN+LISGC + G  + A   FY +R  G   +  T++ V+ +
Sbjct: 354 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L      +QV AL+ K+GF+ ++ V++  ID + KC+ L D++R+FE+    D   +
Sbjct: 414 TASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAV 473

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  IK
Sbjct: 474 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
             F S+A   ++L+  YAK GSI+ +   F  L +R +VSW+ ++ GL Q+G     L++
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +++EG+ P+ IT+ +VL ACN+ G VD+    F++MKE +G+   EEHY+C+IDLL 
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLG 653

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+++ ++MPFQ   S+W ++L AS ++ D +L +  AE++  L+      + L
Sbjct: 654 RAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           L   YA  G W  + +V+K+M+ + I K    SW+ +K++++TF  G+  H   ++IY
Sbjct: 714 LANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIY 771



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 192/357 (53%), Gaps = 3/357 (0%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFDEIP+P  VSW+S+++ Y++ G    A++ F  M+ +GV  + F   ++L  V  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSLI 218
           A  G Q+H   + +G   S+V + N+L+ MYG  G +  A  VF     E + +SWN L+
Sbjct: 116 AQLGAQVHAMAMATGFG-SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 174

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           S    +     A+  F  M +SG  P E+  S V+NACT  RN+D G+QV A+ V++G+ 
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE 234

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +    +A +D++ K  R++ +  +FE++   D    N +IS     G    A+EL   M
Sbjct: 235 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
               + P  F LS +L +       + G Q H   IK+  DS+  +   L++MYAK   +
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           D + ++F  +  RDL+ WN ++ G +  GR  E   +F  L +EGL  +R TLAAVL
Sbjct: 355 DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 164/313 (52%), Gaps = 8/313 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H ++++SG   S   L N LI  Y K      A  VF  + +   +SW+SL++   
Sbjct: 23  GAHLHANLLKSGFLAS---LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    A+  F+ MR  G   +E+ + +V+  C     L  G QV A+++  GF S+  
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK-CVPDAQL--GAQVHAMAMATGFGSDVF 136

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLRE 341
           V +A + ++     ++D+ R+F++      AV  N ++S Y +      A+++F  M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I+PTEF  SCV+++      ++ G Q H+M ++ G++ +   A++L++MY K G +D +
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIA 256

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
           + IF K+   D+VSWN ++ G   NG     +++  ++   GL P+   L+++L AC   
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGA 316

Query: 461 GFVDKGMLVFSAM 473
           G  D G  +   M
Sbjct: 317 GAFDLGRQIHGFM 329


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 212/652 (32%), Positives = 350/652 (53%), Gaps = 37/652 (5%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           +S +Y + L+  C   ++   AK +H  + K      T+L N  +  Y + G       +
Sbjct: 3   SSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHV 62

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD IPQ N  SWN  L    K   L    ++F+ +P  D VSWN  ISGYA+ G    A+
Sbjct: 63  FDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAV 122

Query: 133 EMFSKM-QLQGVRPSGFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLID 188
            ++  M +   +  +  TFS   IL S       G+QI+G +++ G   S+V +G+ L+D
Sbjct: 123 RVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFG-SDVFVGSPLVD 181

Query: 189 MYGKLGVLYYAFG-------------------------------VFLNMEELDIISWNSL 217
           MY KLG++Y A                                 +F  ++E D ISW  +
Sbjct: 182 MYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIM 241

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I+G   +G    ALD F  MR +G++ D++T   V+ AC  L  L +GKQ+ A  ++   
Sbjct: 242 ITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH 301

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             N  V SA +D++SKC  ++ +  +F+++ + +      M+  YG+ GF E A+++F  
Sbjct: 302 KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFE 361

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M R  + P +FTL  V+SS   +  +E G+QFH  A+ SG  S   V+++L+ +Y K GS
Sbjct: 362 MQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGS 421

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            ++S  +F +++ RD VSW  ++ G  Q G+A ET+ +FE +L  GL PD +T   VL A
Sbjct: 422 TENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSA 481

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C+  G V+KG+  F +M +E+G+MP  +H  CIIDLL +AG+L +A +  + MP  P   
Sbjct: 482 CSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVV 541

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
            W ++L +  ++GD+++ +  A+ ++ L+  +P  Y LL+  YA +G+W+ + ++++ MR
Sbjct: 542 GWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMR 601

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
              + K  G SWI  K +++ F+A +       +IY  L  L ++M +EG V
Sbjct: 602 DKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYV 653



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 223/421 (52%), Gaps = 8/421 (1%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           LK A +N   +++ + LI  C  F+  D  + I+G + K GF +  ++G+  +D+Y++ G
Sbjct: 129 LKDAAMNLNRITFSTMLI-LCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              D  + FDE+P++N +  N  + GL++   ++ + ++F  + E D +SW  MI+G   
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G    AL+MF +M+L G     FTF  +L+   S      GKQIH  +IR+     NV 
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK-DNVF 306

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +G++L+DMY K   +  A  VF  M + ++ISW +++ G   +G+ E A+  F+ M+ +G
Sbjct: 307 VGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNG 366

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD++T+  VI++C  L +L++G Q    ++  G +S   V +A I L+ KC   E+S 
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSH 426

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           RLF +++  D      +++ Y ++G     + LF+ ML   ++P   T   VLS+     
Sbjct: 427 RLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAG 486

Query: 362 -VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTI 418
            VE G Q F SM  + G        + ++++  + G ++ +      +    D+V W T+
Sbjct: 487 LVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATL 546

Query: 419 M 419
           +
Sbjct: 547 L 547


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 215/656 (32%), Positives = 343/656 (52%), Gaps = 46/656 (7%)

Query: 11  NKASLS--YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           N  SLS  YC +L+  C         K IH H+ K   N   +L N  +  Y++F     
Sbjct: 10  NSMSLSNHYC-ELLKHCRD------TKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITY 62

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             ++FD++PQ+N  SWN  L    K   L    +VF  +P  D+VSWNS+IS YA  G+ 
Sbjct: 63  ARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFL 122

Query: 129 DYALEMFSKMQLQGV----RPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
             +++ ++ M   G     R +  T  IL S       G Q+HG +++ G   S V +G+
Sbjct: 123 LQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQ-SYVFVGS 181

Query: 185 SLIDMYGKLGVLYYA-------------------------------FGVFLNMEELDIIS 213
            L+DMY K G+++ A                                 +F +M+E D IS
Sbjct: 182 PLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSIS 241

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W ++I+G   +G    A+D F  MR      D+YT   V+ AC  +  L +GKQV A  +
Sbjct: 242 WTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYII 301

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           +  +  N  V SA +D++ KC  ++ +  +F +++  +      M+  YG+ G+ E A++
Sbjct: 302 RTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVK 361

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M    I P +FTL  V+SS   +  +E G+QFH  A+ SG  S   V+++L+ +Y 
Sbjct: 362 IFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYG 421

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K GSI+ S  +F ++   D VSW  ++ G  Q G+A ETL +FE +L  G  PD++T   
Sbjct: 422 KCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIG 481

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC+  G V KG  +F +M +E+ ++P E+HY C+IDL  +AG+L +A    + MPF 
Sbjct: 482 VLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFS 541

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P    W S+L +   + ++++ +  AE ++ L+  +   Y LL+  YA +G+WE +  ++
Sbjct: 542 PDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLR 601

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           K MR  G+ K  GCSWI  KN+++ F+A +  +    +IY  L  L ++M  EG V
Sbjct: 602 KGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYV 657


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/611 (32%), Positives = 335/611 (54%), Gaps = 36/611 (5%)

Query: 20   QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
             L+  C +  ++   K IH  + + G  ++ +L N  +++Y R G+              
Sbjct: 436  HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS-------------- 481

Query: 80   NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                       L+++ N      VF+     DV+SWNSMI+G+A  G  + A ++F +MQ
Sbjct: 482  -----------LMEAQN------VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 140  LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             + + P   TF+ +LS   +      GKQIHG +  SGL L +V LGN+LI+MY + G L
Sbjct: 525  NEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL-DVNLGNALINMYIRCGSL 583

Query: 197  YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
              A  VF +++  D++SW ++I GC + G    A++ F+ M+  G+ P + T S ++  C
Sbjct: 584  QDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVC 643

Query: 257  TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            T    LD+GK+V A  +  G+  ++ V +A I  +SK   + D+  +F+++   D    N
Sbjct: 644  TSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWN 703

Query: 317  VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
             +I+ Y + G G+ A+E    M  +D+ P +F+   +L++      +E G + H+  +K 
Sbjct: 704  KIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKR 763

Query: 376  GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
                +  V ++L+ MYAK GS   + E+F  + ++++V+WN ++    Q+G A++ L  F
Sbjct: 764  KLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFF 823

Query: 436  EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
              + +EG+ PD  T  ++L ACN+ G V +G  +FS+M+ EYGV+P  EHY C++ LL +
Sbjct: 824  NCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGR 883

Query: 496  AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            A +  +A  + + MPF P  ++WE++L A  I+G++ L E+ A   + L   +P  Y LL
Sbjct: 884  ARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILL 943

Query: 556  TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
            +  YA  GRW+ + ++++VM   GI K  G SWI + N I+ F A +  H    +IY  L
Sbjct: 944  SNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAEL 1003

Query: 616  RLLTWEMEDEG 626
            + L+ EME+ G
Sbjct: 1004 KRLSVEMEEAG 1014



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 254/516 (49%), Gaps = 44/516 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C + K+ +  K IH H+ + G ++   +GN  + +Y+R G                
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG---------------- 379

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +L  A ++F  +P+ D++SWN++I+GYA       A+ ++ +MQ 
Sbjct: 380 ---------------DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 141 QGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +GV+P   TF  LLS  +++     GK IH  ++RSG+  SN  L N+L++MY + G L 
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK-SNGHLANALMNMYRRCGSLM 483

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF   +  D+ISWNS+I+G    G  E A   F  M+     PD  T + V++ C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L+ GKQ+     + G   +  + +A I+++ +C  L+D+  +F  L   D      
Sbjct: 544 NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTA 603

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSG 376
           MI      G    A+ELF  M  E  RP + T S +L        ++ G +  +  + SG
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSG 663

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++ +  V ++L+  Y+K+GS+  + E+F K+  RD+VSWN I+ G  QNG     ++   
Sbjct: 664 YELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAY 723

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM---KEEYGVMPGEEHYACIIDLL 493
           ++ E+ + P++ +  ++L AC+    +++G  V + +   K +  V  G    A +I + 
Sbjct: 724 QMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVG----AALISMY 779

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            + G  G+A ++   +  +     W +++ A A +G
Sbjct: 780 AKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHG 814



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 235/467 (50%), Gaps = 9/467 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ +   +K  ++  A +VF E+P  DV+SWNS+IS YA  G+   A ++F +MQ  G  
Sbjct: 66  NLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 145 PSGFTF-SILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T+ SIL +  S A   +GK+IH  +I++G      V  NSL+ MYGK G L  A  
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ-NSLLSMYGKCGDLPRARQ 184

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  +   D++S+N+++       Y +  L  F  M   G SPD+ T   +++A T    
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           LD+GK++  L+V+ G  S+  V +A + +  +C  ++ + + F+     D  V N +I+ 
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAA 304

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSN 380
             ++G    A E +  M  + +     T   +L++      +E G   HS   + G  S+
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             + ++L+ MYA+ G +  + E+F  + KRDL+SWN I+ G  +     E + +++++  
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 441 EGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
           EG+ P R+T   +L AC N   + D  M+    ++   G+         ++++  + G L
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS--GIKSNGHLANALMNMYRRCGSL 482

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            +A ++      +   S W S++   A +G  +    + + M + +L
Sbjct: 483 MEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQEMQNEEL 528



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 243/526 (46%), Gaps = 40/526 (7%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           ++Y S ++  C S    +  K IH  + K G+     + N  L +Y + G          
Sbjct: 129 ITYIS-ILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG---------- 177

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                +L  A +VF  I   DVVS+N+M+  YA   Y    L +
Sbjct: 178 ---------------------DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGL 216

Query: 135 FSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M  +G+ P   T+  LL   +T S    GK+IH   +  GL+ S++ +G +L+ M  
Sbjct: 217 FGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN-SDIRVGTALVTMCV 275

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G +  A   F    + D++ +N+LI+     G+   A +Q+Y MR  G + +  T   
Sbjct: 276 RCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS 335

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++NAC+  + L+ GK + +   + G  S+  + +A I ++++C  L  +  LF  + + D
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHS 370
               N +I+ Y R      A+ L++ M  E ++P   T   +LS+         G   H 
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHE 455

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             ++SG  SN  +A++LM MY + GS+  +  +F     RD++SWN+++ G  Q+G    
Sbjct: 456 DILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYET 515

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
              +F+E+  E L PD IT A+VL  C     ++ G  +   + E  G+         +I
Sbjct: 516 AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALI 574

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG-DVKLTE 535
           ++  + G L  A ++  ++  +   S W +++   A  G D+K  E
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGCADQGEDMKAIE 619



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 184/369 (49%), Gaps = 4/369 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            K+IH  M+ + +   ++ L N LI+MY K   +  A  VF  M   D+ISWNSLIS   
Sbjct: 46  AKRIHAQMVEAWVG-PDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYA 104

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G+ + A   F  M+ +G+ P++ T   ++ AC     L+ GK++ +  +K G+  +  
Sbjct: 105 QQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPR 164

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ + ++ KC  L  + ++F  +   D    N M+  Y +  + +  L LF  M  E 
Sbjct: 165 VQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEG 224

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I P + T   +L +   P  ++ G + H + ++ G +S+  V ++L+ M  + G +DS+ 
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           + F     RD+V +N ++  L Q+G   E  + +  +  +G+  +R T  ++L AC+   
Sbjct: 285 QAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            ++ G L+ S + E+ G     +    +I +  + G L KA ++  TMP +   S W +I
Sbjct: 345 ALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS-WNAI 402

Query: 522 LRASAIYGD 530
           +   A   D
Sbjct: 403 IAGYARRED 411



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 166/341 (48%), Gaps = 35/341 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C + ++ +  K IHG + + G      LGN  +++Y R G+  D   +F  +  
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +                               DV+SW +MI G A  G    A+E+F +M
Sbjct: 596 R-------------------------------DVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 139 QLQGVRPSGFTF-SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +G RP   TF SIL    SSAC   GK++   ++ SG  L   V GN+LI  Y K G 
Sbjct: 625 QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV-GNALISAYSKSGS 683

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M   DI+SWN +I+G   +G G+ A++  Y M+     P++++   ++NA
Sbjct: 684 MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNA 743

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+    L++GK+V A  VK     +  V +A I +++KC    ++  +F+ +   +    
Sbjct: 744 CSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTW 803

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI+ Y ++G    AL  F  M +E I+P   T + +LS+
Sbjct: 804 NAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSA 844



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 11/238 (4%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVK--VG---FLSNSIVLSATIDLFSKCNRLED 299
           +  T   ++  CT+ R L + K++ A  V+  VG   FLSN +     I+++ KC  + D
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLL-----INMYVKCRSVLD 80

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           + ++F+++ R D    N +IS Y + GF + A +LF+ M      P + T   +L++   
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 360 PP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           P  +E+G + HS  IK+G+  +  V +SL+ MY K G +  + ++F  +  RD+VS+NT+
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           +    Q     E L +F ++  EG+ PD++T   +L A      +D+G  +     EE
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 133/293 (45%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S    D  K +  ++   G+   T +GN  +  YS+ G+  D  ++FD++P 
Sbjct: 637 SSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPS 696

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SWN                                +I+GYA  G    A+E   +M
Sbjct: 697 RDIVSWN-------------------------------KIIAGYAQNGLGQTAVEFAYQM 725

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q Q V P+ F+F  LL+  SS      GK++H  +++  L   +V +G +LI MY K G 
Sbjct: 726 QEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQ-GDVRVGAALISMYAKCGS 784

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF N+ E ++++WN++I+     G    AL  F  M   G  PD  T + +++A
Sbjct: 785 QGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSA 844

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C     + +G Q+F ++  + G L         + L  +  R +++  L  Q+
Sbjct: 845 CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM 897


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 339/625 (54%), Gaps = 37/625 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +  +  + +H  + + G++   +  N  +D+YS+ G              
Sbjct: 206 SCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLG-------------- 251

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            ++  A  VF ++PE DVVSWN+ ISG    G+  +ALE+  +M
Sbjct: 252 -----------------DIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ FT S +L   + +     G+QIHG M+++     N +    L+DMY K G+
Sbjct: 295 KSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYI-AFGLVDMYAKHGL 353

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  + + D++ WN+LISGC +      AL  F  MR  G+  +  T++ V+ +
Sbjct: 354 LDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L  +   +QV AL+ K+GFLS+S V++  ID + KC+ L  + R+FE+   +D    
Sbjct: 414 TASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAF 473

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  IK
Sbjct: 474 TSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
             F S+    ++L+  YAK GSI+ +   F  L ++ +VSW+ ++ GL Q+G     LDV
Sbjct: 534 RQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDV 593

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +++E + P+ IT+ +VL ACN+ G VD+    F++MKE +G+   EEHYAC+IDLL 
Sbjct: 594 FHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLG 653

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+++ ++MPFQ   ++W ++L AS ++ D +L    AE++  L+      + L
Sbjct: 654 RAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVL 713

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G W+ + +V+K+M+ + + K    SW+ +K++++TF  G+  H   + IY  
Sbjct: 714 LANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAK 773

Query: 615 LRLLTWEMEDEGCV-YLECDKLDVE 638
           L  L   M   G V  +E D  DV+
Sbjct: 774 LDELGDLMTKAGYVPNVEVDLHDVD 798



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 191/358 (53%), Gaps = 3/358 (0%)

Query: 99  TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
           +A +VFDEIP+P  VSW+S+++ Y++      AL  F  M+   VR + F   ++L    
Sbjct: 55  SARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP 114

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSL 217
            A  G Q+H   + +GL   ++ + N+L+ MYG  G +  A  VF     E + +SWN L
Sbjct: 115 DAGFGTQLHALAMATGLG-GDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGL 173

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           +S    +     A+  F  M + G  P+E+  S V+NACT  R+L+ G++V A+ ++ G+
Sbjct: 174 MSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGY 233

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +    +A +D++SK   +  +  +F ++   D    N  IS    +G  + ALEL   
Sbjct: 234 DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M    + P  FTLS +L +       + G Q H   +K+  DS+  +A  L++MYAK G 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGL 353

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           +D + ++F  + +RDLV WN ++ G +   + AE L +F  + +EG   +R TLAAVL
Sbjct: 354 LDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/461 (28%), Positives = 239/461 (51%), Gaps = 15/461 (3%)

Query: 97  LDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +D A  VFDE   E + VSWN ++S Y       +A+++F +M   GV+P+ F FS +++
Sbjct: 151 VDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVN 210

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + +     G+++H  +IR+G    +V   N+L+DMY KLG +  A  VF  + E D++
Sbjct: 211 ACTGSRDLEAGRKVHAMVIRTGYD-KDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVV 269

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN+ ISGC   G+ + AL+    M+ SG  P+ +T+S ++ AC      + G+Q+    
Sbjct: 270 SWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFM 329

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK    S++ +    +D+++K   L+D+ ++F+ + + D  + N +IS          AL
Sbjct: 330 VKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEAL 389

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M +E       TL+ VL S+  +  +    Q H++A K GF S++ V + L++ Y
Sbjct: 390 SLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSY 449

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K   ++ +  +F K    D++++ +++  L+Q     + + +F E+L +GL PD   L+
Sbjct: 450 WKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLS 509

Query: 452 AVLLACNYGGFVDKGMLVFSAM-KEEY--GVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           ++L AC      ++G  V + + K ++   V  G      ++    + G +  A    S 
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGN----ALVYTYAKCGSIEDADLAFSG 565

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +P + G   W +++   A +G  K   +V  RM+D  + SP
Sbjct: 566 LP-EKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHI-SP 604



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 180/372 (48%), Gaps = 14/372 (3%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +   S   G  IH  +++SGL     V  N L+  Y K  +   A  VF  + +   +SW
Sbjct: 15  AATQSLLQGAHIHAHLLKSGLF---AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSW 71

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           +SL++   N+     AL  F SMR      +E+ + +V+       +   G Q+ AL++ 
Sbjct: 72  SSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP---DAGFGTQLHALAMA 128

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALE 333
            G   +  V +A + ++     ++++  +F++     +    N ++S Y +      A++
Sbjct: 129 TGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVK 188

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M+   ++P EF  SCV+++      +E G + H+M I++G+D +   A++L++MY+
Sbjct: 189 VFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYS 248

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G I  +  +F K+ + D+VSWN  + G   +G     L++  ++   GL P+  TL++
Sbjct: 249 KLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSS 308

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--IIDLLCQAGQLGKAIDITSTMP 510
           +L AC   G  + G  +   M +        ++Y    ++D+  + G L  A  +   +P
Sbjct: 309 ILKACAGSGAFNLGRQIHGFMVKANA---DSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP 365

Query: 511 FQPGCSIWESIL 522
            Q    +W +++
Sbjct: 366 -QRDLVLWNALI 376


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 210/625 (33%), Positives = 341/625 (54%), Gaps = 37/625 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I+ C   +     + IHG+L KLG+++  +  N  +D+Y++ G  +D          
Sbjct: 115 SSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILED---------- 164

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A  VFDEI +PD+VSWN++I+G     Y   ALE+  +M
Sbjct: 165 ---------------------ASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREM 203

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G+ P+ FT S  L   +       G+Q+H S+I+  +  S+  LG  LIDMY K   
Sbjct: 204 NKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG-SDSFLGVGLIDMYSKCNS 262

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M E D+I+WN++ISG   +   E A   F  M   G   ++ T+S V+ +
Sbjct: 263 MDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS 322

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L+     +Q+ ALS+K GF  ++ V+++ ID + KC  +ED+ R+FE+    D  + 
Sbjct: 323 IAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLF 382

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             +++ Y + G GE AL L+  M    I+P  F  S +L++   +   E G Q H   +K
Sbjct: 383 TSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK 442

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GF S+    +SL+ MYAK GSI+ ++  F ++  R +VSW+ ++ GL Q+G   E L +
Sbjct: 443 FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQL 502

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++L+ G+PP+ ITL +VL ACN+ G V +    F++MK  +G+ P +EHYAC+IDLL 
Sbjct: 503 FKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLG 562

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+++ + MPFQ    +W ++L A+ I+ ++ L E  AE ++ L+      + L
Sbjct: 563 RAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVL 622

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G W+ + RV+++M+   + K  G SW+ +K+++YTF  G+  H    +IY  
Sbjct: 623 LANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAK 682

Query: 615 LRLLTWEMEDEGCV-YLECDKLDVE 638
           L  L+  ++  G V  +E D  DVE
Sbjct: 683 LDELSDLLKKAGYVPMVEIDLHDVE 707



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 145/531 (27%), Positives = 263/531 (49%), Gaps = 38/531 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   K     K +HG +   GF++  ++ N  + LY++ G   D            
Sbjct: 16  VLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGD------------ 63

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A  +FD IP+  VVSWN++ S Y        A+ +F  M L
Sbjct: 64  -------------------ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVL 104

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+RP+ F+ S +++  +    +  G++IHG +I+ G   S+    N+L+DMY K+G+L 
Sbjct: 105 SGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYD-SDAFSANALVDMYAKVGILE 163

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + + DI+SWN++I+GC    Y   AL+    M  SG  P+ +T+S  + AC 
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +   + G+Q+ +  +K+   S+S +    ID++SKCN ++D+  +F+ +   D    N 
Sbjct: 224 GMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNA 283

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSG 376
           +IS + +    E A  LF LM  E I   + TLS VL SI      +   Q H++++KSG
Sbjct: 284 VISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSG 343

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+ +  V +SL++ Y K G ++ +T +F +    DLV + +++    Q+G+  E L ++ 
Sbjct: 344 FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYL 403

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+ + G+ PD    +++L AC      ++G  V   +  ++G M        ++++  + 
Sbjct: 404 EMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSDIFAGNSLVNMYAKC 462

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           G +  A    S +P + G   W +++   A +G  K    + ++M+ + +P
Sbjct: 463 GSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVP 512



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 175/321 (54%), Gaps = 5/321 (1%)

Query: 138 MQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M L G++ + F F  +L   +       GKQ+HG ++ +G   S+  + NSL+ +Y K G
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFD-SDEFVANSLVILYAKCG 59

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               A  +F  + +  ++SWN+L S   +S     A+  F+ M  SG  P+E+++S +IN
Sbjct: 60  GFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN 119

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            CT L +  +G+++    +K+G+ S++   +A +D+++K   LED+  +F+++ + D   
Sbjct: 120 VCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVS 179

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N +I+    + +   ALEL + M +  + P  FTLS  L +   +   E G Q HS  I
Sbjct: 180 WNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLI 239

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K    S++ +   L++MY+K  S+D +  +F  + +RD+++WN ++ G +QN    E   
Sbjct: 240 KMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAAS 299

Query: 434 VFEELLEEGLPPDRITLAAVL 454
           +F  +  EG+  ++ TL+ VL
Sbjct: 300 LFPLMHTEGIGFNQTTLSTVL 320



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 51/213 (23%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS L++ C S  +++  K +H H+ K GF +  + GN  +++Y++ G+ +D    F  IP
Sbjct: 417 CSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIP 476

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +  +SW                               ++MI G A  GY   AL++F +
Sbjct: 477 VRGIVSW-------------------------------SAMIGGLAQHGYGKEALQLFKQ 505

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN---VVLG--------NSL 186
           M   GV P+  T    L +V  AC+    H  ++       N   ++ G          +
Sbjct: 506 MLKVGVPPNHIT----LVSVLCACN----HAGLVAEAKHYFNSMKILFGIEPMQEHYACM 557

Query: 187 IDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
           ID+ G+ G L  A  +   M  + + + W +L+
Sbjct: 558 IDLLGRAGKLEAAMELVNKMPFQANALVWGALL 590



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I+  EF    VL +  +   +  G Q H + + +GFDS+  VA+SL+ +YAK G    + 
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +F  +  R +VSWN +      +    E + +F +++  G+ P+  +L++++  C 
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/614 (33%), Positives = 337/614 (54%), Gaps = 36/614 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   ++ +  + +H  + ++G++   +  N  +D+Y + G              
Sbjct: 206 SCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG-------------- 251

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +D A  +F+++P+ DVVSWN++ISG    G+   A+E+  +M
Sbjct: 252 -----------------RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ FT S +L   S A     G+QIHG MI++    S+  +G  L+DMY K   
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHF 353

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M   D+I  N+LISGC + G  + AL  FY +R  G   +  T++ V+ +
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L      +QV AL+VK+GF+ ++ V++  ID + KC+ L D+ R+FE+    D    
Sbjct: 414 TASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAC 473

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  IK
Sbjct: 474 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
             F S+A   ++L+  YAK GSI+ +   F  L +R +VSW+ ++ GL Q+G     L++
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +++EG+ P+ IT+ +VL ACN+ G VD+    F++MKE +G+   EEHY+C+IDLL 
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLG 653

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+++ ++MPFQ   SIW ++L AS ++ D +L +  AE++  L+      + L
Sbjct: 654 RAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G W  + +V+K+M+ + I K    SWI +K++++TF  G+  H   ++IY  
Sbjct: 714 LANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAK 773

Query: 615 LRLLTWEMEDEGCV 628
           L  L   M   G V
Sbjct: 774 LVELGDLMSKAGFV 787



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 195/357 (54%), Gaps = 3/357 (0%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFDEIP+P  VSW+S+++ Y++ G    A++ F  M+ +GV  + F   ++L  V  
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
           A  G Q+H   + +G   S+V + N+L+ MYG  G +  A  VF   + E + +SWN L+
Sbjct: 116 ARLGAQVHAMAMATGFG-SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLM 174

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           S    +     A+  F  M +SG  P E+  S V+NACT  RN++ G+QV A+ V++G+ 
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD 234

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +    +A +D++ K  R++ +  +FE++   D    N +IS     G    A+EL   M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
               + P  FTLS +L +       + G Q H   IK+  DS+  +   L++MYAK   +
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           D + ++F  +  RDL+  N ++ G +  GR  E L +F EL +EGL  +R TLAAVL
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 250/513 (48%), Gaps = 41/513 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI-PQKNCISWNICLRGLLKSD 95
           +H      GF +  ++ N  + +Y  FG  DD  ++F+E   ++N +SWN  +   +K+D
Sbjct: 122 VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKND 181

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
               A++VF E                               M   G++P+ F FS +++
Sbjct: 182 QCGDAIQVFGE-------------------------------MVWSGIQPTEFGFSCVVN 210

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + + +   G+Q+H  ++R G    +V   N+L+DMY K+G +  A  +F  M + D++
Sbjct: 211 ACTGSRNIEAGRQVHAMVVRMGYD-KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVV 269

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN+LISGC  +G+   A++    M+YSG  P+ +T+S ++ AC+     D G+Q+    
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFM 329

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K    S+  +    +D+++K + L+D+ ++F+ +   D  + N +IS     G  + AL
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEAL 389

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  + +E +     TL+ VL S+  +       Q H++A+K GF  +A V + L++ Y
Sbjct: 390 SLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSY 449

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K   +  +  +F +    D+++  +++  L+Q       + +F E+L +GL PD   L+
Sbjct: 450 WKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLS 509

Query: 452 AVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           ++L AC      ++G  V + + K ++  M        ++    + G +  A    S++P
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDAELAFSSLP 567

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            + G   W +++   A +G  K    +  RM+D
Sbjct: 568 -ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 599



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 167/313 (53%), Gaps = 8/313 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H S+++SG SL++    N LI  Y K      A  VF  + +   +SW+SL++   
Sbjct: 23  GAHLHASLLKSG-SLAS--FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    A+  F+ MR  G   +E+ + +V+      R    G QV A+++  GF S+  
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVF 136

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLRE 341
           V +A + ++     ++D+ R+F + D    AV  N ++S Y +      A+++F  M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I+PTEF  SCV+++      +E G Q H+M ++ G+D +   A++L++MY K G +D +
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
           + IF K+   D+VSWN ++ G   NG     +++  ++   GL P+  TL+++L AC+  
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 461 GFVDKGMLVFSAM 473
           G  D G  +   M
Sbjct: 317 GAFDLGRQIHGFM 329



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 39/302 (12%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+ +L+    ++    S ++    + +H    K+GF    ++ N  +D Y         
Sbjct: 402 VNRTTLA---AVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSY--------- 449

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                         W        K   L  A +VF+E    D+++  SMI+  + C + +
Sbjct: 450 --------------W--------KCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGE 487

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            A+++F +M  +G+ P  F  S LL   +++S+   GKQ+H  +I+    +S+   GN+L
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNAL 546

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +  Y K G +  A   F ++ E  ++SW+++I G    G+G+ AL+ F  M   G +P+ 
Sbjct: 547 VYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606

Query: 247 YTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            T++ V+ AC     +D+ K+ F ++    G        S  IDL  +  +L+D++ L  
Sbjct: 607 ITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVN 666

Query: 306 QL 307
            +
Sbjct: 667 SM 668


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 204/614 (33%), Positives = 337/614 (54%), Gaps = 36/614 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   ++ +  + +H  + ++G++   +  N  +D+Y + G              
Sbjct: 206 SCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMG-------------- 251

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +D A  +F+++P+ DVVSWN++ISG    G+   A+E+  +M
Sbjct: 252 -----------------RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ FT S +L   S A     G+QIHG MI++    S+  +G  L+DMY K   
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD-SDDYIGVGLVDMYAKNHF 353

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M   D+I  N+LISGC + G  + AL  FY +R  G   +  T++ V+ +
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L      +QV AL+VK+GF+ ++ V++  ID + KC+ L D+ R+FE+    D    
Sbjct: 414 TASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAC 473

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  IK
Sbjct: 474 TSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
             F S+A   ++L+  YAK GSI+ +   F  L +R +VSW+ ++ GL Q+G     L++
Sbjct: 534 RQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALEL 593

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +++EG+ P+ IT+ +VL ACN+ G VD+    F++MKE +G+   EEHY+C+IDLL 
Sbjct: 594 FGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLG 653

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+++ ++MPFQ   SIW ++L AS ++ D +L +  AE++  L+      + L
Sbjct: 654 RAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G W  + +V+K+M+ + I K    SWI +K++++TF  G+  H   ++IY  
Sbjct: 714 LANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAK 773

Query: 615 LRLLTWEMEDEGCV 628
           L  L   M   G V
Sbjct: 774 LVELGDLMSKAGFV 787



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 194/357 (54%), Gaps = 3/357 (0%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A + FDEIP+P  VSW+S+++ Y++ G    A++ F  M+ +GV  + F   ++L  V  
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
           A  G Q+H   + +G   S+V + N+L+ MYG  G +  A  VF   + E + +SWN L+
Sbjct: 116 ARLGAQVHAMAMATGFG-SDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLM 174

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           S    +     A+  F  M +SG  P E+  S V+NACT  RN++ G+QV A+ V++G+ 
Sbjct: 175 SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYD 234

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +    +A +D++ K  R++ +  +FE++   D    N +IS     G    A+EL   M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
               + P  FTLS +L +       + G Q H   IK+  DS+  +   L++MYAK   +
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           D + ++F  +  RDL+  N ++ G +  GR  E L +F EL +EGL  +R TLAAVL
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 250/513 (48%), Gaps = 41/513 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI-PQKNCISWNICLRGLLKSD 95
           +H      GF +  ++ N  + +Y  FG  DD  ++F+E   ++N +SWN  +   +K+D
Sbjct: 122 VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKND 181

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
               A++VF E                               M   G++P+ F FS +++
Sbjct: 182 QCGDAIQVFGE-------------------------------MVWSGIQPTEFGFSCVVN 210

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + + +   G+Q+H  ++R G    +V   N+L+DMY K+G +  A  +F  M + D++
Sbjct: 211 ACTGSRNIEAGRQVHAMVVRMGYD-KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVV 269

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN+LISGC  +G+   A++    M+YSG  P+ +T+S ++ AC+     D G+Q+    
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFM 329

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K    S+  +    +D+++K + L+D+ ++F+ +   D  + N +IS     G  + AL
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEAL 389

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  + +E +     TL+ VL S+  +       Q H++A+K GF  +A V + L++ Y
Sbjct: 390 SLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSY 449

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K   +  +  +F +    D+++  +++  L+Q       + +F E+L +GL PD   L+
Sbjct: 450 WKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLS 509

Query: 452 AVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           ++L AC      ++G  V + + K ++  M        ++    + G +  A    S++P
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQF--MSDAFAGNALVYTYAKCGSIEDAELAFSSLP 567

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            + G   W +++   A +G  K    +  RM+D
Sbjct: 568 -ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 599



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H S+++SG SL++    N LI  Y K      A   F  + +   +SW+SL++   
Sbjct: 23  GAHLHASLLKSG-SLAS--FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYS 79

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    A+  F+ MR  G   +E+ + +V+      R    G QV A+++  GF S+  
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVF 136

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLRE 341
           V +A + ++     ++D+ R+F + D    AV  N ++S Y +      A+++F  M+  
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I+PTEF  SCV+++      +E G Q H+M ++ G+D +   A++L++MY K G +D +
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIA 256

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
           + IF K+   D+VSWN ++ G   NG     +++  ++   GL P+  TL+++L AC+  
Sbjct: 257 SVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGA 316

Query: 461 GFVDKGMLVFSAM 473
           G  D G  +   M
Sbjct: 317 GAFDLGRQIHGFM 329



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 39/302 (12%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+ +L+    ++    S ++    + +H    K+GF    ++ N  +D Y         
Sbjct: 402 VNRTTLA---AVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSY--------- 449

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                         W        K   L  A +VF+E    D+++  SMI+  + C + +
Sbjct: 450 --------------W--------KCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGE 487

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            A+++F +M  +G+ P  F  S LL   +++S+   GKQ+H  +I+    +S+   GN+L
Sbjct: 488 GAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-MSDAFAGNAL 546

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +  Y K G +  A   F ++ E  ++SW+++I G    G+G+ AL+ F  M   G +P+ 
Sbjct: 547 VYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNH 606

Query: 247 YTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            T++ V+ AC     +D+ K+ F ++    G        S  IDL  +  +L+D++ L  
Sbjct: 607 ITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVN 666

Query: 306 QL 307
            +
Sbjct: 667 SM 668


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 220/656 (33%), Positives = 348/656 (53%), Gaps = 49/656 (7%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A L   S L D   S  S   A+  HG + K      T+L N  +  Y+R G   +  ++
Sbjct: 15  AHLRASSPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRV 74

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG--YSDY 130
           FD IP +N  S+N  L    +    D A  +F+ IP+PD  S+N++++  A  G  ++  
Sbjct: 75  FDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGD 134

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL   + M       + ++F+  LS  ++      G+Q+HG + RS  +  +V +G +L+
Sbjct: 135 ALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHA-DDVHIGTALV 193

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGELALDQFYSMRYSGYSPD 245
           DMY K      A  VF  M E +++SWNSLI+ C+  N   GE AL  F  M  +G+ PD
Sbjct: 194 DMYAKCERPVDARRVFDAMPERNVVSWNSLIT-CYEQNGPVGE-ALVLFVEMMATGFFPD 251

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNR-------- 296
           E T+S V++AC  L    +G+QV A  VK   L + +VL+ A +D+++KC R        
Sbjct: 252 EVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIF 311

Query: 297 -----------------------LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
                                  +ED+  +F Q+   +    NV+I+ Y + G  E A+ 
Sbjct: 312 DSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIR 371

Query: 334 LFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGF------DSNAVVASS 386
           LF  + R+ I PT +T   VL++   I  ++ G Q H   +K GF      +S+  V +S
Sbjct: 372 LFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNS 431

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MY KTGSID   ++F ++  RD VSWN +++G  QNGRA + L +FE +L     PD
Sbjct: 432 LVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPD 491

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T+  VL AC + G VD+G   F  M E++G+ P  +HY C++DLL +AG L +A ++ 
Sbjct: 492 SVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELI 551

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP +P   +W S+L A  ++ +V+L E  A R+ +L   +  PY LL+  YA  G+W 
Sbjct: 552 KDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWA 611

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
            + RV++ M+  G++K  GCSWI I +++  F A + +H    +I+  LR++  EM
Sbjct: 612 DVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLRIIQMEM 667


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 216/680 (31%), Positives = 350/680 (51%), Gaps = 71/680 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           +  + R L FK     K+IH  + K G +   +L N  ++ Y++ G   D  ++FDE+P 
Sbjct: 17  TSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPV 76

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+  SWNI L G  K   L+ A +VF+E+PEPD VSW +MI GY   G  + A+ MF +M
Sbjct: 77  KSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREM 136

Query: 139 QLQGVRPSGFTFS-ILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V P+ FT + +L S  +  C   G+++H  +++ GLS S + + NSL++MY K G 
Sbjct: 137 VSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLS-SYISVANSLLNMYAKSGD 195

Query: 196 LYYAFGVFLNME-------------------------------ELDIISWNSLISGCFNS 224
              A  VF  M+                               E D++SWN++ISG    
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 225 GYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           G+   ALD F  M   S   PD++T++  ++AC  L NL  GKQ+ A  ++  F +   V
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAV 315

Query: 284 LSATIDLFSKCNRLE---------------------------------DSVRLFEQLDRW 310
            +A I ++SK   +E                                  + R+F+ L   
Sbjct: 316 GNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVR 375

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV-LSSIPIPPVEHGSQFH 369
           D      MI  Y + GF + A+ELF+ M++E  +P  +TL+ +   S  +  ++HG Q H
Sbjct: 376 DVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIH 435

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRA 428
           + A +SG  S+  V+++L+ MYAK+GSI+ +  +F  +  KRD ++W ++++ L Q+G  
Sbjct: 436 ASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLG 495

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            E L +FE +LE G+ PD IT   VL AC + G V++G   ++ M+  + ++P   HYAC
Sbjct: 496 EEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYAC 555

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           +IDL  +AG L +A      MP +P    W S+L +  ++ +V+L E  AER++ ++  +
Sbjct: 556 MIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPEN 615

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
              YS L   Y+  G+WE    ++K M+  G+ K  G SW+ IKN+++ F   +  H   
Sbjct: 616 SGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQR 675

Query: 609 QKIYLVLRLLTWEMEDEGCV 628
             IY ++  +  E++  G V
Sbjct: 676 DAIYEMMAKIWKEIKKMGFV 695


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/622 (32%), Positives = 337/622 (54%), Gaps = 58/622 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +     K IHG+L KLG++   +  N  +D+Y++ G              
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG-------------- 307

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +L  A+ VF++I +PD+VSWN++I+G     + + ALE+  +M
Sbjct: 308 -----------------DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           +                        +Q+H S+++  +  S++ +   L+DMY K  +L  
Sbjct: 351 K------------------------RQLHSSLMKMDME-SDLFVSVGLVDMYSKCDLLED 385

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A   F  + E D+I+WN++ISG         AL  F  M   G   ++ T+S ++ +   
Sbjct: 386 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAG 445

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L+ +   +QV  LSVK GF S+  V+++ ID + KC+ +ED+ R+FE+    D      M
Sbjct: 446 LQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSM 505

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
           I+ Y +YG GE AL+LF  M   +++P  F  S +L++   +   E G Q H   +K GF
Sbjct: 506 ITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGF 565

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
             +    +SL+ MYAK GSID +   F +L +R +VSW+ ++ GL Q+G   + L +F +
Sbjct: 566 VLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQ 625

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           +L+EG+ P+ ITL +VL ACN+ G V +  L F +M+E +G  P +EHYAC+IDLL +AG
Sbjct: 626 MLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAG 685

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           ++ +A+++ + MPF+   S+W ++L A+ I+ DV+L    AE +  L+      + LL  
Sbjct: 686 KINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLAN 745

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            YA  G+WE +  V+++MR + + K  G SWI +K+++YTF  G+  H+  Q+IY  L  
Sbjct: 746 IYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDE 805

Query: 618 LTWEMEDEGCV-YLECDKLDVE 638
           L+  M+  G V  +E D  DVE
Sbjct: 806 LSDLMDKAGYVPMVEIDLHDVE 827



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 221/453 (48%), Gaps = 62/453 (13%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + K +    S+SY S+L+ +C + KS      IH H+ K G +    + N  ++LYS   
Sbjct: 47  IDKGNFTPTSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS--- 102

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                       K      A K+ DE  EPD+VSW+++ISGYA 
Sbjct: 103 ----------------------------KCRXFGYARKLVDESSEPDLVSWSALISGYAQ 134

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVV 181
            G    AL  F +M L GV+ + FTFS +L   S V     GKQ+HG ++ SG    +V 
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFE-GDVF 193

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N+L+ MY K      +  +F  + E +++SWN+L S      +   A+  FY M  SG
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSG 253

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             P+E+++S ++NACT LR+  +GK +    +K+G+  +    +A +D+++K   L D++
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
            +FE++ + D    N +I+    +   E ALEL   M R                     
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR--------------------- 352

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
                Q HS  +K   +S+  V+  L++MY+K   ++ +   F  L ++DL++WN I+ G
Sbjct: 353 -----QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 407

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +Q     E L +F E+ +EG+  ++ TL+ +L
Sbjct: 408 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 440



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 209/443 (47%), Gaps = 63/443 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K     K +HG +   GF    ++ N  + +Y+                 
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYA----------------- 203

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K D    + ++FDEIPE +VVSWN++ S Y    +   A+ +F +M
Sbjct: 204 --------------KCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEM 249

Query: 139 QLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L G++P+ F+ S +++  +    +  GK IHG +I+ G    +    N+L+DMY K+G 
Sbjct: 250 VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW-DPFSANALVDMYAKVGD 308

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  +++ DI+SWN++I+GC    + E AL+    M+                 
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK----------------- 351

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
                     +Q+ +  +K+   S+  V    +D++SKC+ LED+   F  L   D    
Sbjct: 352 ----------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAW 401

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIK 374
           N +IS Y +Y     AL LF  M +E I   + TLS +L S     V H   Q H +++K
Sbjct: 402 NAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 461

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SGF S+  V +SL++ Y K   ++ +  IF +    DLVS+ +++    Q G+  E L +
Sbjct: 462 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 521

Query: 435 FEELLEEGLPPDRITLAAVLLAC 457
           F E+ +  L PDR   +++L AC
Sbjct: 522 FLEMQDMELKPDRFVCSSLLNAC 544



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 13/315 (4%)

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           ++P   + S +++ C   ++L  G Q+ A   K G   +  + +  I+L+SKC     + 
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYAR 111

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-P 360
           +L ++    D    + +IS Y + G G  AL  F  M    ++  EFT S VL +  I  
Sbjct: 112 KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVK 171

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +  G Q H + + SGF+ +  VA++L+ MYAK      S  +F ++ +R++VSWN +  
Sbjct: 172 DLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFS 231

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGV 479
              Q     E + +F E++  G+ P+  +L++++ AC       +G ++   + K  Y  
Sbjct: 232 CYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDW 291

Query: 480 MPGEEHYACIIDLLCQAGQLGKAI---------DITSTMPFQPGCSIWESILRASAIYGD 530
            P   +   ++D+  + G L  AI         DI S      GC + E   +A  + G 
Sbjct: 292 DPFSAN--ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 531 VKLTENVAERMMDLQ 545
           +K   + +   MD++
Sbjct: 350 MKRQLHSSLMKMDME 364



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 31/143 (21%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS L++ C +  +F+  K +H H+ K GF    + GN  +++Y++ G+ DD  + F E+ 
Sbjct: 537 CSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT 596

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           ++  +SW                               ++MI G A  G+   AL++F++
Sbjct: 597 ERGIVSW-------------------------------SAMIGGLAQHGHGRQALQLFNQ 625

Query: 138 MQLQGVRPSGFTFSILLSTVSSA 160
           M  +GV P+  T   +L   + A
Sbjct: 626 MLKEGVSPNHITLVSVLGACNHA 648



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           +I T  ++        +  L+ + +  PT  + S +LS       +  G Q H+   KSG
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +  + + L+ +Y+K      + ++  +  + DLVSW+ ++ G  QNG     L  F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 437 ELLEEGLPPDRITLAAVLLACN 458
           E+   G+  +  T ++VL AC+
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACS 168


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 220/625 (35%), Positives = 339/625 (54%), Gaps = 15/625 (2%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +L     L+  C++ +     K++H    K      TY  N  + LYS+ G      + F
Sbjct: 7   TLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            +I   N  S+N  +    K      A ++FD+IPEPD+VS+N++IS YA CG +  AL 
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG 126

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGK-----QIHGSMIRSGLSLSNVVLGNSLID 188
           +FS M+  G+   GFT    LS V +AC        Q+H   + SG   S V + N+L+ 
Sbjct: 127 LFSGMREMGLDMDGFT----LSAVITACCDDVGLIGQLHSVAVSSGFD-SYVSVNNALLT 181

Query: 189 MYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            YGK G L  A  VF  M  + D +SWNS+I        G  AL  F  M   G + D +
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQ 306
           T++ V+ A T L +L  G Q     +K GF  NS V S  IDL+SKC   + D  ++FE+
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 307 LDRWDYAVINVMISTYGR-YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           +   D  + N M+S Y +   F E ALE F+ M     RP + +  CV+S+   +     
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 365 GSQFHSMAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
           G Q HS+A+KS   SN + V ++L+ MY+K G++  +  +F ++ + + VS N+++ G  
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           Q+G   E+L +F+ +LE  + P  IT  +VL AC + G V++G   F+ MKE++ + P  
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY+C+IDLL +AG+L +A ++ + MPF PG   W S+L A   +G+++L    A +++ 
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L+  +  PY +L+  YA  GRWE +  V+K MR  G+ K  GCSWI +K RI+ F A + 
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDS 601

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H   ++IY  L  ++ +M+  G V
Sbjct: 602 SHPMIKEIYEFLEEMSGKMKRAGYV 626


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/627 (32%), Positives = 334/627 (53%), Gaps = 39/627 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +  +  + +HG + + G+    +  N  +D+YS+ G              
Sbjct: 209 SCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLG-------------- 254

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +++ A  VF+++P  DVVSWN+ ISG  + G+   ALE+  +M
Sbjct: 255 -----------------DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQM 297

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ FT S +L   + A     G+QIHG M+++       V    L+DMY K G 
Sbjct: 298 KSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFV-AVGLVDMYAKHGF 356

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD--EYTISIVI 253
           L  A  VF  M   D+I WN+LISGC + G     L  F+ MR  G   D    T++ V+
Sbjct: 357 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVL 416

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            +      +   +QV AL+ K+G LS+S V++  ID + KC +L+ ++++F++    D  
Sbjct: 417 KSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDII 476

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMA 372
               M++   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  
Sbjct: 477 SSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHL 536

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK  F S+    ++L+  YAK GSI+ +   F  L +R +VSW+ ++ GL Q+G     L
Sbjct: 537 IKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRAL 596

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           D+F  +L+EG+ P+ ITL +VL ACN+ G VD     F +MKE +G+   EEHYAC+ID+
Sbjct: 597 DLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDI 656

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG+L  A+++ + MPFQ   ++W ++L AS ++ D +L    AE++  L+      +
Sbjct: 657 LGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTH 716

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL   YA  G W+ + +V+K+M+ + + K    SW+ IK++++TF  G+  H   + IY
Sbjct: 717 VLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIY 776

Query: 613 LVLRLLTWEMEDEGCV-YLECDKLDVE 638
             L  L   M   G V  +E D  DV+
Sbjct: 777 GKLAELGDLMNKAGYVPNVEVDLHDVD 803



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 212/414 (51%), Gaps = 9/414 (2%)

Query: 99  TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
            A  VFDEIP+P  VSW+S+++ Y++ G    AL  F  M+ +GV  + F   ++L    
Sbjct: 55  AARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAP 114

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM----EELDIISW 214
               G Q+H   + + L + +V + N+L+ +YG  G++  A  +F        E + +SW
Sbjct: 115 DVRFGAQVHALAVATRL-VHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSW 173

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++IS    +     A+  F  M +SG  P+E+  S V+NACT  R+L+ G+QV    V+
Sbjct: 174 NTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR 233

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G+  +    +A +D++SK   +E +  +FE++   D    N  IS    +G    ALEL
Sbjct: 234 TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALEL 293

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
              M    + P  FTLS VL +         G Q H   +K+  D +  VA  L++MYAK
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAK 353

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD--RITLA 451
            G +D + ++F  + +RDL+ WN ++ G + +GR  E L +F  + +EGL  D  R TLA
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           +VL +      +     V  A+ E+ G++        +ID   + GQL  AI +
Sbjct: 414 SVLKSTASSEAICHTRQVH-ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKV 466



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 249/525 (47%), Gaps = 52/525 (9%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI----PQKNCISWNICL 88
           F   +H            ++ N  + +Y  FG  D+  ++FDE      ++N +SWN  +
Sbjct: 118 FGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMI 177

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
              +K+D    A+ VF E                               M   G RP+ F
Sbjct: 178 SAYVKNDQSGDAIGVFRE-------------------------------MVWSGERPNEF 206

Query: 149 TFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            FS +++  + +     G+Q+HG+++R+G    +V   N+L+DMY KLG +  A  VF  
Sbjct: 207 GFSCVVNACTGSRDLEAGRQVHGAVVRTGYE-KDVFTANALVDMYSKLGDIEMAATVFEK 265

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D++SWN+ ISGC   G+   AL+    M+ SG  P+ +T+S V+ AC      + G
Sbjct: 266 MPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLG 325

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +Q+    VK     +  V    +D+++K   L+D+ ++F+ + R D  + N +IS     
Sbjct: 326 RQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHD 385

Query: 326 G-FGEVALELFQLMLRE--DIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNA 381
           G  GEV L LF  M +E  D+     TL+ VL S+     + H  Q H++A K G  S++
Sbjct: 386 GRHGEV-LSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDS 444

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V + L++ Y K G +D + ++F +    D++S  T+M  L+Q     + + +F ++L +
Sbjct: 445 HVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRK 504

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEY--GVMPGEEHYACIIDLLCQAGQ 498
           GL PD   L+++L AC      ++G  V + + K ++   V  G      ++    + G 
Sbjct: 505 GLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGN----ALVYAYAKCGS 560

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           +  A    S +P + G   W +++   A +G  K   ++  RM+D
Sbjct: 561 IEDADMAFSGLP-ERGIVSWSAMIGGLAQHGHGKRALDLFHRMLD 604



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 196/418 (46%), Gaps = 15/418 (3%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H  +++SGL        N L+ +Y +  +   A  VF  + +   +SW+SL++   
Sbjct: 23  GAHLHSHLLKSGLLAG---FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYS 79

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    AL  F +MR  G   +E+ + +V+     +R    G QV AL+V    + +  
Sbjct: 80  NNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRF---GAQVHALAVATRLVHDVF 136

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQL----DRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           V +A + ++     ++++ R+F++        +    N MIS Y +      A+ +F+ M
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           +    RP EF  SCV+++      +E G Q H   +++G++ +   A++L++MY+K G I
Sbjct: 197 VWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDI 256

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           + +  +F K+   D+VSWN  + G   +G     L++  ++   GL P+  TL++VL AC
Sbjct: 257 EMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKAC 316

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC-IIDLLCQAGQLGKAIDITSTMPFQPGCS 516
              G  + G  +   M +   V   +E  A  ++D+  + G L  A  +   MP +    
Sbjct: 317 AGAGAFNLGRQIHGFMVK--AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLI 373

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
           +W +++   +  G      ++  RM    L   +  + L          EAI   ++V
Sbjct: 374 LWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQV 431


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 325/598 (54%), Gaps = 36/598 (6%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S  F +++HG+  K  F    ++G+  +D+Y + G  D+            CI       
Sbjct: 83  SVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDE-----------GCI------- 124

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                        VF E+P  +VVSW ++I+G    GY+  AL  FS M +Q V    +T
Sbjct: 125 -------------VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYT 171

Query: 150 FSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS  L   + +    +G++IH   ++ G +  + V  N+L  MY K G L Y   +F +M
Sbjct: 172 FSSALKACADSGALNYGREIHCQTLKKGFTAVSFV-ANTLATMYNKCGKLDYGLRLFESM 230

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D++SW ++I      G  E A+  F  MR +  SP+E+T + VI+ C  L  ++ G+
Sbjct: 231 TQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGE 290

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  ++ G + +  V ++ + ++SKC +L+ +  +F+ L R D    + MIS Y + G
Sbjct: 291 QLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGG 350

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
            GE A +    M RE  RP EF  + VLS    +  +E G Q H+  +  G + N +V S
Sbjct: 351 CGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQS 410

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ MY+K GSI  +++IF + +  ++VSW  ++ G  ++G + E +D+F++L + GL P
Sbjct: 411 ALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRP 470

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T  AVL AC++ G VD G   F+++ + + + P ++HY C+IDLLC+AG+L  A  +
Sbjct: 471 DSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESM 530

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             +MPFQ    +W ++LRA  I+GDV   +  AE+++ L     + +  L   YA +G+W
Sbjct: 531 IQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKW 590

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +    V+K+M+  G+ K  G SWI  K+R+  F +G+  H  G+ IY VL LL  + E
Sbjct: 591 KEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLLASQAE 648



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 211/387 (54%), Gaps = 6/387 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GV 143
           N+ L+ L+K+ +L+ A ++FD++ + D +SW ++ISGY +   +  AL +FSKM ++ G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 144 RPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
               F  S+ L       S   G+ +HG  +++   +++V +G++L+DMY K+G +    
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDF-VNSVFVGSALVDMYMKIGKVDEGC 123

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF  M   +++SW ++I+G   +GY + AL  F  M       D YT S  + AC    
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            L+ G+++   ++K GF + S V +    +++KC +L+  +RLFE + + D      +I 
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS 379
           +  + G  E A++ F+ M   D+ P EFT + V+S    +  +E G Q H+  I+ G   
Sbjct: 244 SNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVD 303

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           +  VA+S+M MY+K   +D ++ +F  L +RD++SW+T++ G  Q G   E  D    + 
Sbjct: 304 SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMR 363

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKG 466
            EG  P+    A+VL  C     +++G
Sbjct: 364 REGPRPNEFAFASVLSVCGNMAILEQG 390



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 218/455 (47%), Gaps = 59/455 (12%)

Query: 5   LKKAHVNKASLSYCSQL---------------IDRCLSFKSFDFAKTIHGHLFKLGFNAH 49
           L +A  NK +L+Y S +               +  C    + ++ + IH    K GF A 
Sbjct: 144 LVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAV 203

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           +++ N    +Y++ G  D  L+LF+ + Q++ +SW   +   ++    + A+K F  + E
Sbjct: 204 SFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRE 263

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQI 166
            D                               V P+ FTF+ ++S   T+     G+Q+
Sbjct: 264 TD-------------------------------VSPNEFTFAAVISGCATLGRIEWGEQL 292

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H  +IR GL + ++ + NS++ MY K   L  A  VF  +   DIISW+++ISG    G 
Sbjct: 293 HAHVIRRGL-VDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGC 351

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
           GE A D    MR  G  P+E+  + V++ C  +  L++GKQ+ A  + VG   N++V SA
Sbjct: 352 GEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSA 411

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            I+++SKC  ++++ ++F++ +  +      MI+ Y  +G+ + A++LF+ + +  +RP 
Sbjct: 412 LINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPD 471

Query: 347 EFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             T   VL++      V+ G   F+S++       +      ++++  + G ++ +  + 
Sbjct: 472 SVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMI 531

Query: 405 VKLD-KRDLVSWNTIMMGLTQNG------RAAETL 432
             +  +RD V W+T++     +G      RAAE +
Sbjct: 532 QSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKI 566


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/604 (32%), Positives = 331/604 (54%), Gaps = 36/604 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +  D  + IHG + K+G +   +  N  +D+YS+ G              
Sbjct: 187 SIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAG-------------- 232

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             ++ A+ VF +I  PDVVSWN++I+G      +D AL +  +M
Sbjct: 233 -----------------EIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G RP+ FT S  L   ++      G+Q+H S+I+   + S++     L+DMY K  +
Sbjct: 276 KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMD-AHSDLFAAVGLVDMYSKCEM 334

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   + +M + DII+WN+LISG    G    A+  F  M       ++ T+S V+ +
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L+ +   KQ+  +S+K G  S+  V+++ +D + KCN ++++ ++FE+    D    
Sbjct: 395 VASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+ Y +YG GE AL+L+  M   DI+P  F  S +L++   +   E G Q H  AIK
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GF  +   ++SL+ MYAK GSI+ +   F ++  R +VSW+ ++ G  Q+G   E L +
Sbjct: 515 FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRL 574

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F ++L +G+PP+ ITL +VL ACN+ G V++G   F  M+  +G+ P +EHYAC+IDLL 
Sbjct: 575 FNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLG 634

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           ++G+L +A+++ +++PF+    +W ++L A+ I+ +++L +  A+ + DL+      + L
Sbjct: 635 RSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVL 694

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G WE + +V+K M+ + + K  G SWI IK+++YTF  G+  H    +IY  
Sbjct: 695 LANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAK 754

Query: 615 LRLL 618
           L  L
Sbjct: 755 LDQL 758



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 257/532 (48%), Gaps = 40/532 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   +  +  + +HG     GF +  ++ N  + +Y++ G  DD  +LF  I ++N
Sbjct: 88  VLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERN 147

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                          VVSWN++ S Y        A+ +F +M  
Sbjct: 148 -------------------------------VVSWNALFSCYVQSELCGEAVGLFKEMVR 176

Query: 141 QGVRPSGFTFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+ F+ SI+L+  +    G   ++IHG M++ GL L      N+L+DMY K G + 
Sbjct: 177 SGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFS-ANALVDMYSKAGEIE 235

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF ++   D++SWN++I+GC      +LAL     M+ SG  P+ +T+S  + AC 
Sbjct: 236 GAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +   + G+Q+ +  +K+   S+       +D++SKC  ++D+ R ++ + + D    N 
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +IS Y + G    A+ LF  M  EDI   + TLS VL S+  +  ++   Q H+++IKSG
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S+  V +SL++ Y K   ID +++IF +    DLV++ +++   +Q G   E L ++ 
Sbjct: 416 IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYL 475

Query: 437 ELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           ++ +  + PD    +++L AC N   +     L   A+K  +G M        ++++  +
Sbjct: 476 QMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK--FGFMCDIFASNSLVNMYAK 533

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
            G +  A    S +P   G   W +++   A +G  K    +  +M+   +P
Sbjct: 534 CGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVP 584



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 212/422 (50%), Gaps = 36/422 (8%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H HL K GF+    L N  + LYS+                        C R       
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSK------------------------CRR------- 31

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              A K+ DE  E DVVSW+S++SGY   G+ + AL +F++M L GV+ + FTF  +L  
Sbjct: 32  FGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKA 91

Query: 157 VS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            S       G+++HG  + +G   S+  + N+L+ MY K G+L  +  +F  + E +++S
Sbjct: 92  CSMKRDLNMGRKVHGMAVVTGFE-SDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVS 150

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN+L S    S     A+  F  M  SG  P+E++ISI++NAC  L+  D G+++  L +
Sbjct: 151 WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLML 210

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+G   +    +A +D++SK   +E +V +F+ +   D    N +I+    +   ++AL 
Sbjct: 211 KMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALM 270

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           L   M     RP  FTLS  L +       E G Q HS  IK    S+   A  L++MY+
Sbjct: 271 LLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYS 330

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   +D +   +  + K+D+++WN ++ G +Q G   + + +F ++  E +  ++ TL+ 
Sbjct: 331 KCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLST 390

Query: 453 VL 454
           VL
Sbjct: 391 VL 392



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 167/310 (53%), Gaps = 2/310 (0%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           ++H  +I+ G S  +  L N L+ +Y K     YA  +     ELD++SW+SL+SG   +
Sbjct: 2   ELHAHLIKFGFS-RDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G+ E AL  F  M   G   +E+T   V+ AC+  R+L+ G++V  ++V  GF S+  V 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +  + +++KC  L+DS RLF  +   +    N + S Y +      A+ LF+ M+R  I 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P EF++S +L++   +   + G + H + +K G D +   A++L++MY+K G I+ +  +
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  +   D+VSWN I+ G   +      L + +E+   G  P+  TL++ L AC   GF 
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 464 DKGMLVFSAM 473
           + G  + S++
Sbjct: 301 ELGRQLHSSL 310



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 75/143 (52%), Gaps = 7/143 (4%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS L++ C +  +++  K +H H  K GF    +  N  +++Y++ G+ +D  + F EIP
Sbjct: 489 CSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP 548

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVF-----DEIPEPDVVSWNSMISGYASCGYSDYAL 132
            +  +SW+  + G  +  +   AL++F     D +P P+ ++  S++      G  +   
Sbjct: 549 NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVP-PNHITLVSVLCACNHAGLVNEGK 607

Query: 133 EMFSKMQLQ-GVRPSGFTFSILL 154
           + F KM++  G++P+   ++ ++
Sbjct: 608 QYFEKMEVMFGIKPTQEHYACMI 630


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 187/606 (30%), Positives = 338/606 (55%), Gaps = 36/606 (5%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  +  + K +H  +   G  + T +G   + +Y++ G+  D  Q+F+++  +       
Sbjct: 239 SPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR------- 291

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                                   D+++WN+MI G A  GY + A E++++MQ +GV P+
Sbjct: 292 ------------------------DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPN 327

Query: 147 GFTFSILLSTV--SSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T+ ILL+    S+A H GK+IH  + ++G + S++ + N+LI MY + G +  A  VF
Sbjct: 328 KITYVILLNACVNSAALHWGKEIHSRVAKAGFT-SDIGVQNALISMYSRCGSIKDARLVF 386

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   D+ISW ++I G   SG+G  AL  +  M+ +G  P+  T + ++NAC+    L+
Sbjct: 387 DKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALE 446

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+++    V+ G  +++ V +  ++++S C  ++D+ ++F+++ + D    N MI  Y 
Sbjct: 447 WGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYA 506

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAV 382
            +  G+ AL+LF  +  E ++P + T   +L++      +E   + H++  K GF S+  
Sbjct: 507 AHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTS 566

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V ++L+  YAK GS   ++ +F K+ KR+++SWN I+ G  Q+GR  + L +FE +  EG
Sbjct: 567 VGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEG 626

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + PD +T  ++L AC++ G +++G   F +M +++ ++P  EHY C++DLL +AGQL +A
Sbjct: 627 VKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEA 686

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
             +  TMPFQ    IW ++L A  I+G+V + E  AE  + L L + + Y  L+  YA  
Sbjct: 687 EALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAA 746

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G W++  +++K+M + G+ K  G SWI + ++++ F A +  H   +KIY  L  LT  M
Sbjct: 747 GMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAM 806

Query: 623 EDEGCV 628
           + +G V
Sbjct: 807 KMKGYV 812



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 272/581 (46%), Gaps = 38/581 (6%)

Query: 4   YLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           YL++      S  Y  +++ RC+  K     + +H H+ +       Y  N  +++Y + 
Sbjct: 13  YLQQQGAQVNSSDYM-KMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQC 71

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
           G+ ++  Q++ ++                                E  V SWN+M+ GY 
Sbjct: 72  GSIEEARQVWKKLS-----------------------------YMERTVHSWNAMVVGYI 102

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNV 180
             GY + AL++  +MQ  G+ P   T    LS+  S      G++IH   +++GL L +V
Sbjct: 103 QYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGL-LFDV 161

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            + N +++MY K G +  A  VF  ME+  ++SW   I G  + G  E A + F  M   
Sbjct: 162 KVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQE 221

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G  P+  T   V+NA +    L  GK V +  +  G  S++ V +A + +++KC   +D 
Sbjct: 222 GVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDC 281

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            ++FE+L   D    N MI      G+ E A E++  M RE + P + T   +L++    
Sbjct: 282 RQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNS 341

Query: 361 PVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
              H G + HS   K+GF S+  V ++L+ MY++ GSI  +  +F K+ ++D++SW  ++
Sbjct: 342 AALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMI 401

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            GL ++G  AE L V++E+ + G+ P+R+T  ++L AC+    ++ G  +   + E  G+
Sbjct: 402 GGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GL 460

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
                    ++++    G +  A  +   M  Q     + +++   A +   K    + +
Sbjct: 461 ATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFD 519

Query: 540 RMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           R+ +  L P  + Y  +  A A  G  E    +  ++RK G
Sbjct: 520 RLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 171/339 (50%), Gaps = 35/339 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L++ C++  +  + K IH  + K GF +   + N  + +YSR G+  D   +FD++ +K+
Sbjct: 334 LLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKD 393

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ISW   + GL KS     AL V+ E                               MQ 
Sbjct: 394 VISWTAMIGGLAKSGFGAEALTVYQE-------------------------------MQQ 422

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P+  T++ +L+  SS      G++IH  ++ +GL+ ++  +GN+L++MY   G + 
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA-TDAHVGNTLVNMYSMCGSVK 481

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M + DI+++N++I G      G+ AL  F  ++  G  PD+ T   ++NAC 
Sbjct: 482 DARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 541

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +L+  +++  L  K GF S++ V +A +  ++KC    D+  +FE++ + +    N 
Sbjct: 542 NSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNA 601

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           +I    ++G G+ AL+LF+ M  E ++P   T   +LS+
Sbjct: 602 IIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSA 640



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 182/411 (44%), Gaps = 73/411 (17%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V    ++Y S +++ C S  + ++ + IH  + + G     ++GN  +++YS  G
Sbjct: 420 MQQAGVEPNRVTYTS-ILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCG 478

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMIS 120
           +  D  Q+FD + Q++ +++N  + G    +    ALK+FD + E    PD V++ +M++
Sbjct: 479 SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 538

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNV 180
             A+ G  ++A                                ++IH +++R G   S+ 
Sbjct: 539 ACANSGSLEWA--------------------------------REIH-TLVRKGGFFSDT 565

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            +GN+L+  Y K G    A  VF  M + ++ISWN++I G    G G+ AL  F  M+  
Sbjct: 566 SVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKME 625

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G  PD  T   +++AC+    L++G++ F        +S    +  TI+ +         
Sbjct: 626 GVKPDIVTFVSLLSACSHAGLLEEGRRYFC------SMSQDFAIIPTIEHY--------- 670

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM-LREDIRPTEFTLSCVLSSIPI 359
                            M+   GR G  + A  L + M  + + R     L        +
Sbjct: 671 ---------------GCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNV 715

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
           P  E  ++    ++K   D NAVV  +L  MYA  G  DS+ ++   +++R
Sbjct: 716 PVAERAAE---SSLKLDLD-NAVVYVALSHMYAAAGMWDSAAKLRKLMEQR 762



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 134/245 (54%), Gaps = 3/245 (1%)

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A+D    ++  G   +      ++  C ++++L  G+QV    ++   + +   ++A I+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAV--INVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           ++ +C  +E++ +++++L   +  V   N M+  Y +YG+ E AL+L + M +  + P  
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 348 FTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            T+   LSS   P  +E G + H  A+++G   +  VA+ ++ MYAK GSI+ + E+F K
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           ++K+ +VSW   + G    GR+    ++F+++ +EG+ P+RIT  +VL A +    +  G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 467 MLVFS 471
             V S
Sbjct: 247 KAVHS 251


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 338/625 (54%), Gaps = 15/625 (2%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +L     L+  C++ +     K++H    K      TY  N  + LYS+ G      + F
Sbjct: 7   TLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            +I   N  S+N  +    K      A ++FD+IPEPD+VS+N++IS YA CG +  AL 
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG 126

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGK-----QIHGSMIRSGLSLSNVVLGNSLID 188
           +FS M+  G+    FT    LS V +AC        Q+H   + SG   S V + N+L+ 
Sbjct: 127 LFSGMREMGLDMDXFT----LSAVITACCDDVGLIGQLHSVAVSSGFD-SYVSVNNALLT 181

Query: 189 MYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            YGK G L  A  VF  M  + D +SWNS+I        G  AL  F  M   G + D +
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQ 306
           T++ V+ A T L +L  G Q     +K GF  NS V S  IDL+SKC   + D  ++FE+
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 307 LDRWDYAVINVMISTYGR-YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           +   D  + N M+S Y +   F E ALE F+ M     RP + +  CV+S+   +     
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 365 GSQFHSMAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
           G Q HS+A+KS   SN + V ++L+ MY+K G++  +  +F ++ + + VS N+++ G  
Sbjct: 362 GKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA 421

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           Q+G   E+L +F+ +LE  + P  IT  +VL AC + G V++G   F+ MKE++ + P  
Sbjct: 422 QHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEA 481

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY+C+IDLL +AG+L +A ++ + MPF PG   W S+L A   +G+++L    A +++ 
Sbjct: 482 EHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ 541

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L+  +  PY +L+  YA  GRWE +  V+K MR  G+ K  GCSWI +K RI+ F A + 
Sbjct: 542 LEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDS 601

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H   ++IY  L  ++ +M+  G V
Sbjct: 602 SHPMIKEIYEFLEEMSGKMKRAGYV 626


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 338/625 (54%), Gaps = 37/625 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +  ++   +HG+L KLG+++  +  N  LD+Y++ G  +           
Sbjct: 192 STVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPE----------- 240

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A+ VF EIP+PD+VSWN++I+G      +D AL++  KM
Sbjct: 241 --------------------AAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKM 280

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V PS FT S  L   ++      G+Q+H ++++  +   + V G  LIDMY K G+
Sbjct: 281 GSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFV-GVGLIDMYSKCGL 339

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M   D+I WNS+ISG  N GY   A+  F +M   G   ++ T+S ++ +
Sbjct: 340 LQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKS 399

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
               +     +QV  +S+K G+  +  V ++ +D + KC  LED+ ++FE     D    
Sbjct: 400 TAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAY 459

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+ Y +YG GE AL+++  M   DI+P  F  S + ++   +   E G Q H   +K
Sbjct: 460 TSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK 519

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G  S+    +SL+ MYAK GSID ++ IF ++  R +VSW+ ++ GL Q+G   + L +
Sbjct: 520 CGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQL 579

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F ++L+ G+ P+ ITL +VL ACN+ G V +    F  M++ +G+ P +EHYAC++D+L 
Sbjct: 580 FYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILG 639

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G+L +A+ +   MPFQ   ++W ++L A+ I+ +++L  + AE ++ L+      + L
Sbjct: 640 RVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHIL 699

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G W+ + +V++ M+ + + K  G SWI +K+++YTF  G+  H   ++IY+ 
Sbjct: 700 LANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVK 759

Query: 615 LRLLTWEMEDEGCV-YLECDKLDVE 638
           L  L   +   G V  +E D  DVE
Sbjct: 760 LDDLRERLTSAGYVPMIETDLHDVE 784



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 204/445 (45%), Gaps = 76/445 (17%)

Query: 57  LDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN 116
           ++LYS+                        C R          A K+  +  EPD+VSW+
Sbjct: 89  VNLYSKCQ----------------------CFR---------VARKLVIDSSEPDLVSWS 117

Query: 117 SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL----------------------- 153
           ++ISGY   G  + AL  + +M L G + + FTFS +                       
Sbjct: 118 ALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVT 177

Query: 154 -------------LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
                        LSTV +AC       +G ++HG +I+ G   S+    N+L+DMY K 
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD-SDPFSANALLDMYAKS 236

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G    A  VF  + + DI+SWN++I+GC      +LAL     M     +P  +T+S  +
Sbjct: 237 GCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSAL 296

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  +  +  G+Q+ +  +K+    +S V    ID++SKC  L+D+  +F+ +   D  
Sbjct: 297 KACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVI 356

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMA 372
           V N +IS Y   G+   A+ LF  M +E +   + TLS +L S           Q H+++
Sbjct: 357 VWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTIS 416

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IKSG+  +  VA+SL++ Y K   ++ + ++F      DLV++ +++   +Q G   E L
Sbjct: 417 IKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEAL 476

Query: 433 DVFEELLEEGLPPDRITLAAVLLAC 457
            ++  + +  + PD    +++  AC
Sbjct: 477 KMYLRMQDRDIKPDAFIFSSLFNAC 501



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 43/276 (15%)

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           ++L+SKC     + +L       D    + +IS Y + G GE AL  +  M     +  E
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 348 FTLSCVLS------------------------SIPIPPVE-----------------HGS 366
           FT S VL                         S  I P E                 +G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H   IK G+DS+   A++L++MYAK+G  +++  +F ++ K D+VSWN ++ G   + 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           +    L +  ++    + P   TL++ L AC   G V  G  + SA+  +  + P     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALM-KMDMEPDSFVG 327

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             +ID+  + G L  A  +   MP +    +W SI+
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSII 362


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 308/531 (58%), Gaps = 5/531 (0%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVFD +PE + VSW +MISGYAS   +  AL +F  M+ +    + F F+ +LS ++ 
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTL 221

Query: 160 ---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                +GKQIH   +++GL LS V +GN+L+ MY K G L  A   F    + + I+W++
Sbjct: 222 PELVNNGKQIHCIAVKNGL-LSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSA 280

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G   SG  + AL  F SM  SG  P E+T   VINAC+ L    +GKQV    +K+G
Sbjct: 281 MITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG 340

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F S   V++A +D+++KC+ + D+ + F+ L   D  +   MI  Y + G  E AL L+ 
Sbjct: 341 FESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYG 400

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M  E I P E T++ VL +   +  +E G Q H+  +K GF     + S+L  MYAK G
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCG 460

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +   T +F ++  RD++SWN ++ GL+QNG   E L++FEE+  EG  PD +T   +L 
Sbjct: 461 CLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILS 520

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G V++G   F  M +E+G+ P  EHYAC++D+L +AG+L +AI+ T +     G 
Sbjct: 521 ACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGM 580

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            +W  IL A   Y + +L     E++M+L       Y LL+  Y+  GRWE + RV+++M
Sbjct: 581 CLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMM 640

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +  G++K  GCSWI +K+ ++ F   +  H     I++ LR L+ +M+DEG
Sbjct: 641 KLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEG 691



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 207/380 (54%), Gaps = 7/380 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS--DYALEMFSKMQLQGVRPSGFTF 150
           K   L  A  VF+ I   DVVSWN +I+GY+  G S   + +E+F +M+ +   P+  TF
Sbjct: 52  KCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTF 111

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + +    ST+  A  G+  H   I+   S  +V +G+SL++MY K G+   A  VF  M 
Sbjct: 112 AGVFTAASTLVDAAGGRLAHAVAIKMD-SCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP 170

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E + +SW ++ISG  +      AL  F  MR      +E+  + V++A T    ++ GKQ
Sbjct: 171 ERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQ 230

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  ++VK G LS   V +A + +++KC  L+D+++ FE     +    + MI+ Y + G 
Sbjct: 231 IHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGD 290

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            + AL+LF  M    IRP+EFT   V+++   +     G Q H   +K GF+S   V ++
Sbjct: 291 SDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTA 350

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MYAK  SI  + + F  L + D+V W +++ G  QNG   + L ++  +  EG+ P+
Sbjct: 351 LVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPN 410

Query: 447 RITLAAVLLACNYGGFVDKG 466
            +T+A+VL AC+    +++G
Sbjct: 411 ELTMASVLKACSSLAALEQG 430



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 181/373 (48%), Gaps = 37/373 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    K G  +   +GN  + +Y++ G+ DD LQ F+    KN I+W+  + G  +S
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQS 288

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            + D ALK                               +FS M L G+RPS FTF  ++
Sbjct: 289 GDSDKALK-------------------------------LFSSMHLSGIRPSEFTFVGVI 317

Query: 155 STVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S   +A  GKQ+H  +++ G   S + +  +L+DMY K   +  A   F  ++E DI
Sbjct: 318 NACSDLGAAWEGKQVHDYLLKLGFE-SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + W S+I G   +G  E AL  +  M   G  P+E T++ V+ AC+ L  L++GKQ+ A 
Sbjct: 377 VLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHAR 436

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK GF     + SA   +++KC  L+D   +F ++   D    N MIS   + G G+ A
Sbjct: 437 TVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEA 496

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKSGFDSNAVVASSLME 389
           LELF+ M  E  +P   T   +LS+   +  VE G   F  M  + G D      + +++
Sbjct: 497 LELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVD 556

Query: 390 MYAKTGSIDSSTE 402
           + ++ G +  + E
Sbjct: 557 ILSRAGKLKEAIE 569



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 157/299 (52%), Gaps = 5/299 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK +H  +I+S  S S V + NSL+++Y K   L  A  VF  ++  D++SWN +I+G  
Sbjct: 25  GKALHAQIIKS--SSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYS 82

Query: 223 NSGY--GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             G       ++ F  MR    +P+ +T + V  A + L +   G+   A+++K+    +
Sbjct: 83  QHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRD 142

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V S+ ++++ K     ++ ++F+ +   +      MIS Y        AL LF+LM R
Sbjct: 143 VFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRR 202

Query: 341 EDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E+    EF  + VLS++ +P  V +G Q H +A+K+G  S   V ++L+ MYAK GS+D 
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDD 262

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           + + F     ++ ++W+ ++ G  Q+G + + L +F  +   G+ P   T   V+ AC+
Sbjct: 263 ALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 36/289 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C    +    K +H +L KLGF +  Y+    +D+Y+                   
Sbjct: 316 VINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYA------------------- 356

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K  ++  A K FD + EPD+V W SMI GY   G ++ AL ++ +M++
Sbjct: 357 ------------KCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEM 404

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G+ P+  T + +L   SS      GKQIH   ++ G  L  V +G++L  MY K G L 
Sbjct: 405 EGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL-EVPIGSALSTMYAKCGCLK 463

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               VF  M   D+ISWN++ISG   +G G+ AL+ F  M+  G  PD  T   +++AC+
Sbjct: 464 DGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523

Query: 258 KLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            +  +++G   F +   + G        +  +D+ S+  +L++++   E
Sbjct: 524 HMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           ++ G   H+  IKS   S   +A+SL+ +YAK   +  +  +F ++  +D+VSWN I+ G
Sbjct: 22  LQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80

Query: 422 LTQNGRAAET--LDVFEELLEEGLPPDRITLAAVLLACNY-----GGFVDKGMLVFSAMK 474
            +Q+G +  +  +++F+ +  E   P+  T A V  A +      GG +   + +   M 
Sbjct: 81  YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAI--KMD 138

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
               V  G    + ++++ C+AG   +A  +  TMP +   S W +++   A
Sbjct: 139 SCRDVFVG----SSLMNMYCKAGLTPEARKVFDTMPERNSVS-WATMISGYA 185



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +  K IH    K GF     +G+    +Y++ G   D   +F  +P 
Sbjct: 415 ASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA 474

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ ISWN  + GL ++     AL++F+E+     +PD V++ +++S  +  G  +     
Sbjct: 475 RDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGY 534

Query: 135 FSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLG 183
           F  M  + G+ P    ++ ++  +S A   K+       + I  G+ L  ++LG
Sbjct: 535 FRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILG 588


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/627 (32%), Positives = 340/627 (54%), Gaps = 39/627 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   +  +  + +H  + + G++   +  N  +D+YS+ G              
Sbjct: 206 SCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLG-------------- 251

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            ++  A  VF ++P+ DVVSWN+ ISG    G+  +ALE+  +M
Sbjct: 252 -----------------DIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +  G+ P+ FT S +L   + A  G     +QIHG MI++  + S+  +G +L+DMY K 
Sbjct: 295 KSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKA-CADSDDYIGVALVDMYAKY 353

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G+L  A  VF  +   D++ WN+LISGC + G    +L  F  MR  G   +  T++ V+
Sbjct: 354 GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            +   L  +    QV AL+ K+GFLS+S V++  ID + KCN L  + ++FE+    +  
Sbjct: 414 KSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNII 473

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
               MI+   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  
Sbjct: 474 AFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 533

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK  F ++    ++L+  YAK GSI+ +   F  L  + +VSW+ ++ GL Q+G     L
Sbjct: 534 IKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRAL 593

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           DVF  +++E + P+ ITL +VL ACN+ G VD+    FS+MKE +G+   EEHY+C+IDL
Sbjct: 594 DVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDL 653

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG+L  A+++ ++MPF+   ++W ++L AS ++ D +L +  AE++  L+      +
Sbjct: 654 LGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTH 713

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL   YA  G W+ + +V+K+M+ + + K    SW+ +K+R++TF  G+  H   + IY
Sbjct: 714 VLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIY 773

Query: 613 LVLRLLTWEMEDEGCV-YLECDKLDVE 638
             L  L   M   G V  LE D  DV+
Sbjct: 774 AKLEELGDLMSKAGYVPNLEVDLHDVD 800



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 195/360 (54%), Gaps = 5/360 (1%)

Query: 99  TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
           +A +VFDE P+P  VSW+S+++ Y++      AL  F  M+ +GVR + F   I+L    
Sbjct: 55  SARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAP 114

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSL 217
            A  G Q+H   + +GLS  ++ + N+L+ MYG  G +  A  VF     + + +SWN +
Sbjct: 115 DAGLGVQVHAVAVSTGLS-GDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGM 173

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           +S    +     A++ F  M +SG  P+E+  S V+NACT  R+L+ G++V A+ V+ G+
Sbjct: 174 MSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGY 233

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +    +A +D++SK   +  +  +F ++ + D    N  IS    +G  + ALEL   
Sbjct: 234 DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGS---QFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           M    + P  FTLS +L +         +   Q H   IK+  DS+  +  +L++MYAK 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKY 353

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +D + ++F  + ++DL+ WN ++ G +  G   E+L +F  + +EG   +R TLAAVL
Sbjct: 354 GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 154/294 (52%), Gaps = 8/294 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  IH  +++SGL  +     N L+  Y K  +   A  VF    +   +SW+SL++   
Sbjct: 23  GAHIHAHLLKSGLLHA---FRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYS 79

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+     AL  F +MR  G   +E+ + IV+  C     L  G QV A++V  G   +  
Sbjct: 80  NNALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVSTGLSGDIF 136

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLRE 341
           V +A + ++     ++++ R+F++  R   AV  N M+S + +      A+ELF  M+  
Sbjct: 137 VANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWS 196

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            +RP EF  SCV+++      +E G + H+M +++G+D +   A++L++MY+K G I  +
Sbjct: 197 GVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMA 256

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
             +F K+ K D+VSWN  + G   +G     L++  ++   GL P+  TL+++L
Sbjct: 257 ALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 143/302 (47%), Gaps = 39/302 (12%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           +N+ +L+    ++    S ++      +H    K+GF + +++ N  +D Y +       
Sbjct: 404 INRTTLA---AVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKC------ 454

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                     NC+ +               A KVF+E    +++++ SMI+  + C + +
Sbjct: 455 ----------NCLRY---------------ANKVFEEHSSDNIIAFTSMITALSQCDHGE 489

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            A+++F +M  +G+ P  F  S LL   +++S+   GKQ+H  +I+    +++V  GN+L
Sbjct: 490 DAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKF-MTDVFAGNAL 548

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +  Y K G +  A   F  + +  ++SW+++I G    G+G+ ALD F  M     +P+ 
Sbjct: 549 VYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNH 608

Query: 247 YTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            T++ V+ AC     +D+ K  F ++    G        S  IDL  +  +L+D++ L  
Sbjct: 609 ITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVN 668

Query: 306 QL 307
            +
Sbjct: 669 SM 670


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 330/596 (55%), Gaps = 42/596 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H  + K G ++  ++GN  +++YS+                            L+ SD 
Sbjct: 215 VHTMVIKSGLDSTIFVGNSMVNMYSK---------------------------SLMVSD- 246

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL-- 154
              A  VFD +   + VSWNSMI+G+ + G    A E+F +M+L+GV+ +   F+ ++  
Sbjct: 247 ---AKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL 303

Query: 155 -STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-DII 212
            + +      KQ+H  +I++G    ++ +  +L+  Y K   +  AF +F  M  + +++
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDF-DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVV 362

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW ++ISG   +G  + A++ F  MR  G  P+ +T S ++ A   +       Q+ AL 
Sbjct: 363 SWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV----SPSQIHALV 418

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK  + ++  V +A  D +SK     ++ ++FE +D  D    + M+S Y + G  E A+
Sbjct: 419 VKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAV 478

Query: 333 ELFQLMLREDIRPTEFTLSCVLSS--IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           ++F  + +E + P EFT S VL++   P   VE G QFHS +IKSGF +   V+S+L+ M
Sbjct: 479 KIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTM 538

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G+I+S+ E+F +   RDLVSWN+++ G  Q+G   ++L +FEE+  + L  D IT 
Sbjct: 539 YAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITF 598

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             V+ AC + G V++G   F  M ++Y ++P  EHY+C++DL  +AG L KA+D+ + MP
Sbjct: 599 IGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMP 658

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
           F  G +IW ++L A  ++ +V+L E  AE+++ LQ      Y LL+  YA  G W+   +
Sbjct: 659 FPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAK 718

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           V+K+M    + K  G SWI +KN+ ++F AG+L H    +IYL L  L+  ++D G
Sbjct: 719 VRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAG 774



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 154/586 (26%), Positives = 290/586 (49%), Gaps = 92/586 (15%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L DR +        K +H    K GF     +G   +D+Y              
Sbjct: 99  LKVCGCLFDRIV-------GKQVHCQCIKCGFVEDVSVGTSLVDMY-------------- 137

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                            +K+++++   +VFDE+   +VVSW S+++GY   G ++ AL++
Sbjct: 138 -----------------MKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 135 FSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           FS+MQL+G++P+ FTF+ +L  ++   +   G Q+H  +I+SGL  S + +GNS+++MY 
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD-STIFVGNSMVNMYS 239

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K  ++  A  VF +ME  + +SWNS+I+G   +G    A + FY MR  G    +   + 
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT 299

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           VI  C  ++ +   KQ+    +K G   +  + +A +  +SKC+ ++D+ +LF  +    
Sbjct: 300 VIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMM---- 355

Query: 312 YAVINV-----MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
           + V NV     +IS Y + G  + A+ LF  M RE +RP  FT S +L++   + P    
Sbjct: 356 HGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP---- 411

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
           SQ H++ +K+ ++++  V ++L + Y+K G  + + +IF  +D++D+V+W+ ++ G  Q 
Sbjct: 412 SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQM 471

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G     + +F +L +EG+ P+  T ++VL AC                     V  G++ 
Sbjct: 472 GDIEGAVKIFLQLAKEGVEPNEFTFSSVLNAC---------------AAPTASVEQGKQF 516

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           ++C I    ++G             F     +  +++   A  G+++    V +R +D  
Sbjct: 517 HSCSI----KSG-------------FSNALCVSSALVTMYAKRGNIESANEVFKRQVDRD 559

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
           L S   ++ +   YA  G  +  +++ + MR   + ++ G ++IG+
Sbjct: 560 LVS---WNSMISGYAQHGCGKKSLKIFEEMRSKNL-ELDGITFIGV 601



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 178/360 (49%), Gaps = 6/360 (1%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS--- 158
           ++FDE P+  +   N ++  ++    +  AL +F  ++  G    G + S +L       
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GKQ+H   I+ G  + +V +G SL+DMY K   +     VF  M   +++SW SL+
Sbjct: 107 DRIVGKQVHCQCIKCGF-VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G   +G  E AL  F  M+  G  P+ +T + V+        ++KG QV  + +K G  
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           S   V ++ ++++SK   + D+  +F+ ++  +    N MI+ +   G    A ELF  M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 339 LREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E ++ T+   + V+     I  +    Q H   IK+G D +  + ++LM  Y+K   I
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEI 345

Query: 398 DSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           D + ++F  +   +++VSW  I+ G  QNGR    +++F ++  EG+ P+  T + +L A
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA 405



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 199/397 (50%), Gaps = 45/397 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C + K   FAK +H  + K G +    +    +  YS+    DD  +LF  +  
Sbjct: 298 ATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHG 357

Query: 79  -KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +N +SW                                ++ISGY   G +D A+ +F +
Sbjct: 358 VQNVVSW-------------------------------TAIISGYVQNGRTDRAMNLFCQ 386

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           M+ +GVRP+ FT+S +L T ++A    QIH  ++++    S  V G +L D Y K+G   
Sbjct: 387 MRREGVRPNHFTYSTIL-TANAAVSPSQIHALVVKTNYENSPSV-GTALSDSYSKIGDAN 444

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  ++E DI++W++++SG    G  E A+  F  +   G  P+E+T S V+NAC 
Sbjct: 445 EAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504

Query: 258 K-LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAVI 315
               ++++GKQ  + S+K GF +   V SA + +++K   +E +  +F+ Q+DR D    
Sbjct: 505 APTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDR-DLVSW 563

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N MIS Y ++G G+ +L++F+ M  +++     T   V+S+      V  G ++  + +K
Sbjct: 564 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 623

Query: 375 SGFDSNAVVA----SSLMEMYAKTGSIDSSTEIFVKL 407
              D + V      S ++++Y++ G ++ + ++  K+
Sbjct: 624 ---DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM 657


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 196/633 (30%), Positives = 335/633 (52%), Gaps = 25/633 (3%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +YCS ++  C   KS    + IH  +          LG++ + +Y   G   +  ++FD+
Sbjct: 103 TYCS-VLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161

Query: 76  IPQKNCISWNICLRGLLKSDN------------------LDTALKVFDEIPEPDVVSWNS 117
           +  +    WN+ + G  K  N                  +++A K+FDE+ + DV+SWNS
Sbjct: 162 VANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSG 174
           MISGY S G S+  L++F +M L G+     T   +++  S+      G+ +HG  I++ 
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKAS 281

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
                + L N L+DMY K G L  A  VF  M E  ++SW S+I+G    G  ++++  F
Sbjct: 282 FG-KELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 340

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
           + M   G SPD +TI+ +++AC     L+ GK V     +    S+  V +A +D+++KC
Sbjct: 341 HEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKC 400

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             + D+  +F ++   D    N MI  Y +      AL LF + ++ + +P   T++C+L
Sbjct: 401 GSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLF-VEMQYNSKPNSITMACIL 459

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +   +  +E G + H   +++GF  +  VA++L++MY K G++  +  +F  + ++DLV
Sbjct: 460 PACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLV 519

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SW  ++ G   +G  +E +  F E+   G+ PD ++  ++L AC++ G +D+G   F+ M
Sbjct: 520 SWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM 579

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
           +    + P  EHYACI+DLL +AG L KA      MP +P  +IW ++L    IY DVKL
Sbjct: 580 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKL 639

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E VAE + +L+  +   Y LL   YA   +WE + ++++ + + G+ K  GCSWI IK 
Sbjct: 640 AEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKG 699

Query: 594 RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +++ F  G+  H    KI L+L+     M++EG
Sbjct: 700 KVHIFVTGDSSHPLANKIELLLKKTRTRMKEEG 732


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 342/619 (55%), Gaps = 14/619 (2%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           Q++  C++ K     K++H    K    + TYL N  + LYS+          F++  + 
Sbjct: 13  QILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEP 72

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S+N  +    K   +  A  +FD+IP+PD+VS+N++I+ YA  G +  AL +F +M+
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 140 LQGVRPSGFTFSILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             G+   GFTFS     +++ C+     +Q+H     SG   S V + NSL+  Y K G+
Sbjct: 133 EMGLVMDGFTFS---GVITACCNHVGLIRQLHSLAFSSGFD-SYVSVKNSLLTYYSKNGI 188

Query: 196 LYYAFGVFLNMEE--LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           L  A  VF  M E   D +SWNS+I        G  AL  +  M + G+  D +T++ V+
Sbjct: 189 LEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVL 248

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDRWDY 312
              + + +L  G Q  A ++K GF  N  V S  ID+++KC   + +S ++FE++   D 
Sbjct: 249 TTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDL 308

Query: 313 AVINVMISTYGRYGFGEV-ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
            V N MIS Y +     V ALE F+ M R    P + +  C +S+   +     G QFH+
Sbjct: 309 VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHA 368

Query: 371 MAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +A+KS   SN + V ++L+ MY+K G++  + ++F ++ + + V+ N+I+ G  Q+G   
Sbjct: 369 LAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGT 428

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E+L++FE++L   + P  ITL ++L AC + G V++G   F+ MK+ +G+ P  EHY+C+
Sbjct: 429 ESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCM 488

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLL +AG+L +A  +  TMPF PG + W ++L A   YG+++L E  A + + L+  + 
Sbjct: 489 IDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNA 548

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
           +PY +L   Y+   +WE   R++K+MR  GI K  GCSWI +  R++ F A +  H   +
Sbjct: 549 VPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIK 608

Query: 610 KIYLVLRLLTWEMEDEGCV 628
           +I++ L  +  +M+  G V
Sbjct: 609 EIHMYLDEMFVKMKRAGYV 627


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 325/596 (54%), Gaps = 42/596 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H  + K GF     + N  + LYSR G   D                            
Sbjct: 216 VHAMVVKHGFEEAIPVFNSLISLYSRLGMLRD---------------------------- 247

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              A  VFD++   D V+WNSMI+GY   G      E+F+KMQL GV+P+  TF+ ++ +
Sbjct: 248 ---ARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKS 304

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-LDII 212
            +S       K +    ++SG +   +V+  +L+    K   +  A  +F  MEE  +++
Sbjct: 305 CASLRELALVKLMQCKALKSGFTTDQIVI-TALMVALSKCKEMDDALSLFSLMEEGKNVV 363

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW ++ISGC  +G  + A++ F  MR  G  P+ +T S ++     +   +   +V    
Sbjct: 364 SWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEV---- 419

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K  +  +S V +A +D + K     D+V++FE ++  D    + M++ Y + G  E A 
Sbjct: 420 IKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAA 479

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           +LF  +++E I+P EFT S V+++   P    E G QFH+ AIK   ++   V+S+L+ M
Sbjct: 480 KLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTM 539

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G+IDS+ E+F +  +RDLVSWN+++ G +Q+G+A + L+VF+E+ +  +  D +T 
Sbjct: 540 YAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTF 599

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             V+ AC + G V+KG   F++M  ++ + P  +HY+C+IDL  +AG L KA+ I + MP
Sbjct: 600 IGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMP 659

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
           F PG ++W ++L A+ ++ +V+L E  AE+++ LQ      Y LL+  YA  G W+    
Sbjct: 660 FPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTN 719

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           V+K+M K  + K  G SWI +KN+ Y+F AG+L H    +IY  L  L+  ++D G
Sbjct: 720 VRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAG 775



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 211/370 (57%), Gaps = 8/370 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K++N++   +VFDE+ E +VVSW S+++GY+  G   Y  E+F +MQ +GV P+ +T S
Sbjct: 139 MKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVS 198

Query: 152 ILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +++ + +      G Q+H  +++ G   +  V  NSLI +Y +LG+L  A  VF  ME 
Sbjct: 199 TVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVF-NSLISLYSRLGMLRDARDVFDKMEI 257

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D ++WNS+I+G   +G      + F  M+ +G  P   T + VI +C  LR L   K +
Sbjct: 258 RDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLM 317

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGF 327
              ++K GF ++ IV++A +   SKC  ++D++ LF  ++     V    MIS   + G 
Sbjct: 318 QCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGG 377

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            + A+ LF  M RE ++P  FT S +L ++  P     S+ H+  IK+ ++ ++ V ++L
Sbjct: 378 NDQAVNLFSQMRREGVKPNHFTYSAIL-TVHYPVFV--SEMHAEVIKTNYERSSSVGTAL 434

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++ Y K G+   + ++F  ++ +DL++W+ ++ G  Q G   E   +F +L++EG+ P+ 
Sbjct: 435 LDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNE 494

Query: 448 ITLAAVLLAC 457
            T ++V+ AC
Sbjct: 495 FTFSSVINAC 504



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 193/374 (51%), Gaps = 11/374 (2%)

Query: 100 ALKVFDEIPE-PDVVS-WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           A  +FD+IP  P  +   N ++  Y+    +  AL +F  +    ++P   T S + +  
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 158 SSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + +  GK   Q+H   ++ GL + +V +G SL+DMY K   +     VF  M E +++SW
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGL-VDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 215 NSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
            SL++G  +N  YG    + F  M+Y G  P+ YT+S VI A      +  G QV A+ V
Sbjct: 163 TSLLAGYSWNGLYG-YVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K GF     V ++ I L+S+   L D+  +F++++  D+   N MI+ Y R G      E
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFE 281

Query: 334 LFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M    ++PT  T + V+ S   +  +         A+KSGF ++ +V ++LM   +
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 393 KTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           K   +D +  +F  +++ +++VSW  ++ G  QNG   + +++F ++  EG+ P+  T +
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYS 401

Query: 452 AVLLACNYGGFVDK 465
           A+ L  +Y  FV +
Sbjct: 402 AI-LTVHYPVFVSE 414



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 139/281 (49%), Gaps = 39/281 (13%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           F   +H  + K  +   + +G   LD Y + G + D                        
Sbjct: 411 FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTID------------------------ 446

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                  A+KVF+ I   D+++W++M++GYA  G ++ A ++F ++  +G++P+ FTFS 
Sbjct: 447 -------AVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSS 499

Query: 153 LL----STVSSACHGKQIHGSMIRSGLSLSNVV-LGNSLIDMYGKLGVLYYAFGVFLNME 207
           ++    S  ++A  GKQ H   I+  + L+N + + ++L+ MY K G +  A  VF   +
Sbjct: 500 VINACASPTAAAEQGKQFHAYAIK--MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK 557

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E D++SWNS+ISG    G  + AL+ F  M+      D  T   VI ACT    ++KG++
Sbjct: 558 ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQK 617

Query: 268 VFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQL 307
            F   +    ++ ++   S  IDL+S+   LE ++ +  ++
Sbjct: 618 YFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEM 658



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 20/272 (7%)

Query: 257 TKLRNLDKGK--QVFALSVKVGFLSNSIVLSATI--DLFSKCNRLEDSVRLFEQLDRWDY 312
           T L N  K    +    S+ + F+SN+++    I  +LF K      +++   QL     
Sbjct: 10  TTLTNTSKNPFFRFIHYSISLKFISNTVLCVPHIAHNLFDKIPHRPTTLKEHNQL----- 64

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH--GSQFHS 370
                 + +Y R    + AL LF  +L   ++P E TLSCV + I    ++   G Q H 
Sbjct: 65  ------LFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFN-ICAGSLDGKLGRQVHC 117

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +K G   +  V +SL++MY KT +++    +F ++ +R++VSW +++ G + NG    
Sbjct: 118 QCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGY 177

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
             ++F ++  EG+ P+R T++ V+ A    G V  G+ V  AM  ++G       +  +I
Sbjct: 178 VWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV-HAMVVKHGFEEAIPVFNSLI 236

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            L  + G L  A D+   M  +   + W S++
Sbjct: 237 SLYSRLGMLRDARDVFDKMEIRDWVT-WNSMI 267


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 211/682 (30%), Positives = 345/682 (50%), Gaps = 72/682 (10%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           C  L+   +  +     + IH  + K G      +L N  L+LY + G+S D  +LFDE+
Sbjct: 15  CVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEM 74

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P K   SWN  L    K+ NLD+A +VFDEIP+PD VSW +MI GY   G    A+  F 
Sbjct: 75  PLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFL 134

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M   G+ P+ FTF+ +L++ ++A     GK++H  +++ G S   V + NSL++MY K 
Sbjct: 135 RMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQS-GVVPVANSLLNMYAKC 193

Query: 194 G------VLY-------------------------YAFGVFLNMEELDIISWNSLISGCF 222
           G      V++                          A  +F  M + DI+SWNS+I+G  
Sbjct: 194 GDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYC 253

Query: 223 NSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
           + GY   AL+ F + ++ S   PD++T+  V++AC    +L  GKQ+ A  V+       
Sbjct: 254 HQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAG 313

Query: 282 IVLSATIDLFSKCNRLEDSVR---------------------------------LFEQLD 308
            V +A I +++K   +E + R                                 +F+ L 
Sbjct: 314 AVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLK 373

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQ 367
             D      MI  Y + G    AL LF+LM+RE  +P  +TL+ VLS I  +  ++HG Q
Sbjct: 374 HRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQ 433

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNG 426
            H++AI+    S+  V ++L+ MY+++GSI  + +IF  +   RD ++W ++++ L Q+G
Sbjct: 434 LHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              E +++FE++L   L PD IT   VL AC + G V++G   F+ MK  + + P   HY
Sbjct: 494 LGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHY 553

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC+IDLL +AG L +A +    MP +P    W S+L +  ++  V L +  AE+++ +  
Sbjct: 554 ACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDP 613

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            +   Y  L    +  G+WE   +V+K M+   + K  G SW+ IKN+++ F   +  H 
Sbjct: 614 NNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHP 673

Query: 607 GGQKIYLVLRLLTWEMEDEGCV 628
               IY ++  +  E++  G +
Sbjct: 674 QRDAIYCMISKIWKEIKKMGFI 695


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 197/595 (33%), Positives = 326/595 (54%), Gaps = 37/595 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +HG++ KLGF ++T + N  +  Y +FG                              
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFG------------------------------ 244

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SIL 153
             +++A  +FDE+ EPDVVSWNSMI+G    G+S   LE+F +M + GV     T  S+L
Sbjct: 245 -GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVL 303

Query: 154 LS--TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           ++   + +   G+ +HG  +++  S   VV  N+L+DMY K G L  A  VF+ M +  I
Sbjct: 304 VACANIGNLSLGRALHGFGVKACFS-EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 362

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW S+I+     G    A+  F  M+  G  PD YT++ +++AC    +LDKG+ V + 
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K G  SN  V +A I++++KC  +E++  +F ++   D    N MI  Y +      A
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           LELF L +++  +P + T++CVL +   +  ++ G + H   ++ G+ S+  VA +L++M
Sbjct: 483 LELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 541

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G +  +  +F  + K+DL+SW  ++ G   +G   E +  F E+   G+ PD  + 
Sbjct: 542 YAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSF 601

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           +A+L AC++ G +++G   F++M+ E GV P  EHYAC++DLL + G L KA     +MP
Sbjct: 602 SAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMP 661

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P  +IW  +L    I+ DVKL E VAE + +L+  +   Y +L   YA   +WE + +
Sbjct: 662 IKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKK 721

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           ++K M+K G  +  GCSWI +  +   F AG  +H   +KI ++L  LT +M++E
Sbjct: 722 LRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNE 776



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/491 (29%), Positives = 242/491 (49%), Gaps = 45/491 (9%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SYCS ++  C   KS +  K +H  +   G +    LG + + +Y   G   D++Q    
Sbjct: 96  SYCS-VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCG---DLVQ---- 147

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                     K+FD+I    V  WN ++S YA  G    ++ +F
Sbjct: 148 ------------------------GRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 183

Query: 136 SKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KMQ  GV  + +TF+ +L   + +      K++HG +++ G   SN  + NSLI  Y K
Sbjct: 184 KKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG-SNTAVVNSLIAAYFK 242

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  +F  + E D++SWNS+I+GC  +G+    L+ F  M   G   D  T+  V
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWD 311
           + AC  + NL  G+ +    VK  F S  +V S T +D++SKC  L  +  +F ++    
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACF-SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTT 361

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHS 370
                 +I+ Y R G    A+ LF  M  + +RP  +T++ ++ +      ++ G   HS
Sbjct: 362 IVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 421

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             IK+G  SN  V ++L+ MYAK GS++ +  +F K+  +D+VSWNT++ G +QN    E
Sbjct: 422 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNE 481

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYAC- 488
            L++F + +++   PD IT+A VL AC     +DKG  +    ++  Y     + H AC 
Sbjct: 482 ALELFLD-MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF---SDLHVACA 537

Query: 489 IIDLLCQAGQL 499
           ++D+  + G L
Sbjct: 538 LVDMYAKCGLL 548



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 205/436 (47%), Gaps = 41/436 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +  +    + +HG   K  F+      N  LD+YS+ G                    
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG-------------------- 345

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                      NL+ A +VF ++ +  +VSW S+I+ Y   G    A+ +F +MQ +GVR
Sbjct: 346 -----------NLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVR 394

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +T + ++      SS   G+ +H  +I++G+  SN+ + N+LI+MY K G +  A  
Sbjct: 395 PDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG-SNLPVTNALINMYAKCGSVEEARL 453

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  +   DI+SWN++I G   +     AL+ F  M+   + PD+ T++ V+ AC  L  
Sbjct: 454 VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAA 512

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           LDKG+++    ++ G+ S+  V  A +D+++KC  L  +  LF+ + + D     VMI+ 
Sbjct: 513 LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAG 572

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDS 379
           YG +GFG  A+  F  M    I P E + S +L++     +  E    F+SM  + G + 
Sbjct: 573 YGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEP 632

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
                + ++++ A+ G++  + +    +  K D   W  ++ G   +        V E +
Sbjct: 633 KLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHI 692

Query: 439 LEEGLPPDRITLAAVL 454
            E  L PD      VL
Sbjct: 693 FE--LEPDNTRYYVVL 706



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 186/384 (48%), Gaps = 7/384 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK++H  +I +G+S+    LG  L+ MY   G L     +F  +    +  WN L+S   
Sbjct: 113 GKRVHSVIISNGISVDEA-LGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYA 171

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G    ++  F  M+  G   + YT + V+     L  + + K+V    +K+GF SN+ 
Sbjct: 172 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 231

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V+++ I  + K   +E +  LF++L   D    N MI+     GF    LE+F  ML   
Sbjct: 232 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 291

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +     TL  VL +   I  +  G   H   +K+ F    V +++L++MY+K G+++ +T
Sbjct: 292 VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 351

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+FVK+    +VSW +I+    + G  ++ + +F+E+  +G+ PD  T+ +++ AC    
Sbjct: 352 EVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 411

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +DKG  V S + +  G+         +I++  + G + +A  + S +P +   S W ++
Sbjct: 412 SLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTM 469

Query: 522 LRASAIYGDVKLTENVAERMMDLQ 545
           +     Y    L     E  +D+Q
Sbjct: 470 IGG---YSQNLLPNEALELFLDMQ 490



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 147/307 (47%), Gaps = 38/307 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    S D  + +H ++ K G  ++  + N  +++Y++ G+ ++   +F +IP 
Sbjct: 401 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 460

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N+MI GY+     + ALE+F  M
Sbjct: 461 KDIVSW-------------------------------NTMIGGYSQNLLPNEALELFLDM 489

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q Q  +P   T + +L   +       G++IHG ++R G   S++ +  +L+DMY K G+
Sbjct: 490 QKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGY-FSDLHVACALVDMYAKCGL 547

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  + + D+ISW  +I+G    G+G  A+  F  MR +G  PDE + S ++NA
Sbjct: 548 LVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNA 607

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    L++G + F ++  + G        +  +DL ++   L  + +  E +  + D  
Sbjct: 608 CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 667

Query: 314 VINVMIS 320
           +  V++S
Sbjct: 668 IWGVLLS 674



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 140/287 (48%), Gaps = 14/287 (4%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+  C + ++L+ GK+V ++ +  G   +  + +  + ++  C  L    ++F+++    
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
             + N+++S Y + G    ++ LF+ M +  +    +T +CVL     +  V+   + H 
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 219

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +K GF SN  V +SL+  Y K G ++S+  +F +L + D+VSWN+++ G   NG +  
Sbjct: 220 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGN 279

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP--GEE--HY 486
            L++F ++L  G+  D  TL +VL+AC      + G L        +GV     EE    
Sbjct: 280 GLEIFIQMLILGVEVDLTTLVSVLVAC-----ANIGNLSLGRALHGFGVKACFSEEVVFS 334

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA---SAIYGD 530
             ++D+  + G L  A ++   M      S W SI+ A     +Y D
Sbjct: 335 NTLLDMYSKCGNLNGATEVFVKMGDTTIVS-WTSIIAAYVREGLYSD 380


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/595 (32%), Positives = 325/595 (54%), Gaps = 37/595 (6%)

Query: 35   KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
            K +HG++ KLGF ++T + N  +  Y +FG                              
Sbjct: 490  KRVHGYVLKLGFGSNTAVVNSLIAAYFKFG------------------------------ 519

Query: 95   DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SIL 153
              +++A  +FDE+ EPDVVSWNSMI+G    G+S   LE+F +M + GV     T  S+L
Sbjct: 520  -GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVL 578

Query: 154  LS--TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            ++   + +   G+ +HG  +++  S   VV  N+L+DMY K G L  A  VF+ M +  I
Sbjct: 579  VAWANIGNLSLGRALHGFGVKACFS-EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 637

Query: 212  ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            +SW S I+     G    A+  F  M+  G  PD YT++ +++AC    +LDKG+ V + 
Sbjct: 638  VSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 697

Query: 272  SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             +K G  SN  V +A I++++KC  +E++  +F ++   D    N MI  Y +      A
Sbjct: 698  VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757

Query: 332  LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            LELF L +++  +P + T++CVL +   +  ++ G + H   ++ G+ S+  VA +L++M
Sbjct: 758  LELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 816

Query: 391  YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
            YAK G +  +  +F  + K+DL+SW  ++ G   +G   E +  F E+   G+ PD  + 
Sbjct: 817  YAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSF 876

Query: 451  AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            + +L AC++ G +++G   F++M+ E GV P  EHYAC++DLL + G L KA     +MP
Sbjct: 877  SVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMP 936

Query: 511  FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
             +P  +IW  +L    I+ DVKL E VAE + +L+  +   Y +L   YA   +WE + +
Sbjct: 937  IKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKK 996

Query: 571  VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            ++K M+K G  +  GCSWI +  +   F AG  +H   ++I ++LR LT +M++E
Sbjct: 997  LRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNE 1051



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 240/491 (48%), Gaps = 45/491 (9%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SYCS ++  C   KS +  K +H  +   G +    LG + + +Y   G   D++Q    
Sbjct: 371 SYCS-VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCG---DLVQ---- 422

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                     K+FD+I    V  WN ++S YA  G    ++ +F
Sbjct: 423 ------------------------GRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 458

Query: 136 SKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KMQ  GV  + +TF+ +L   + +      K++HG +++ G   SN  + NSLI  Y K
Sbjct: 459 KKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG-SNTAVVNSLIAAYFK 517

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  +F  + E D++SWNS+I+GC  +G+    L+ F  M   G   D  T+  V
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWD 311
           + A   + NL  G+ +    VK  F S  +V S T +D++SKC  L  +  +F ++    
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACF-SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTT 636

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHS 370
                  I+ Y R G    A+ LF  M  + +RP  +T++ ++ +      ++ G   HS
Sbjct: 637 IVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 696

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             IK+G  SN  V ++L+ MYAK GS++ +  +F K+  +D+VSWNT++ G +QN    E
Sbjct: 697 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNE 756

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYAC- 488
            L++F + +++   PD IT+A VL AC     +DKG  +    ++  Y     + H AC 
Sbjct: 757 ALELFLD-MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF---SDLHVACA 812

Query: 489 IIDLLCQAGQL 499
           ++D+  + G L
Sbjct: 813 LVDMYAKCGLL 823



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 202/431 (46%), Gaps = 41/431 (9%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +    + +HG   K  F+      N  LD+YS+ G                         
Sbjct: 586 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG------------------------- 620

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                 NL+ A +VF ++ +  +VSW S I+ Y   G    A+ +F +MQ +GVRP  +T
Sbjct: 621 ------NLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 674

Query: 150 FSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + ++      SS   G+ +H  +I++G+  SN+ + N+LI+MY K G +  A  VF  +
Sbjct: 675 VTSIVHACACSSSLDKGRDVHSYVIKNGMG-SNLPVTNALINMYAKCGSVEEARLVFSKI 733

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              DI+SWN++I G   +     AL+ F  M+   + PD+ T++ V+ AC  L  LDKG+
Sbjct: 734 PVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGR 792

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++    ++ G+ S+  V  A +D+++KC  L  +  LF+ + + D     VMI+ YG +G
Sbjct: 793 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 852

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVVA 384
           FG  A+  F  M    I P E + S +L++     +  E    F+SM  + G +      
Sbjct: 853 FGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 912

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           + ++++ A+ G++  + +    +  K D   W  ++ G   +        V E + E  L
Sbjct: 913 ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFE--L 970

Query: 444 PPDRITLAAVL 454
            PD      VL
Sbjct: 971 EPDNTRYYVVL 981



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 185/384 (48%), Gaps = 7/384 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK++H  +I +G+S+    LG  L+ MY   G L     +F  +    +  WN L+S   
Sbjct: 388 GKRVHSVIISNGISIDEA-LGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYA 446

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G    ++  F  M+  G   + YT + V+     L  + + K+V    +K+GF SN+ 
Sbjct: 447 KIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTA 506

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V+++ I  + K   +E +  LF++L   D    N MI+     GF    LE+F  ML   
Sbjct: 507 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILG 566

Query: 343 IRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +     TL  VL +   I  +  G   H   +K+ F    V +++L++MY+K G+++ +T
Sbjct: 567 VEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGAT 626

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+FVK+    +VSW + +    + G  ++ + +F+E+  +G+ PD  T+ +++ AC    
Sbjct: 627 EVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSS 686

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +DKG  V S + +  G+         +I++  + G + +A  + S +P +   S W ++
Sbjct: 687 SLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS-WNTM 744

Query: 522 LRASAIYGDVKLTENVAERMMDLQ 545
           +     Y    L     E  +D+Q
Sbjct: 745 IGG---YSQNSLPNEALELFLDMQ 765



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 148/307 (48%), Gaps = 38/307 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    S D  + +H ++ K G  ++  + N  +++Y++ G+ ++   +F +IP 
Sbjct: 676 TSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 735

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N+MI GY+     + ALE+F  M
Sbjct: 736 KDIVSW-------------------------------NTMIGGYSQNSLPNEALELFLDM 764

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q Q  +P   T + +L   +       G++IHG ++R G   S++ +  +L+DMY K G+
Sbjct: 765 QKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGY-FSDLHVACALVDMYAKCGL 822

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  + + D+ISW  +I+G    G+G  A+  F  MR +G  PDE + S+++NA
Sbjct: 823 LVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNA 882

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    L++G + F ++  + G        +  +DL ++   L  + +  E +  + D  
Sbjct: 883 CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 942

Query: 314 VINVMIS 320
           +  V++S
Sbjct: 943 IWGVLLS 949


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 182/603 (30%), Positives = 329/603 (54%), Gaps = 36/603 (5%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +  + KT+H H+   G  +   +G   + +Y++ G+  D  Q+F+++  +          
Sbjct: 360 ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR---------- 409

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                D+++WN+MI G A  G  + A E++ +MQ +G+ P+  T
Sbjct: 410 ---------------------DLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKIT 448

Query: 150 FSILLSTV--SSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           + ILL+     +A H G++IH  +++ G  + ++ + N+LI MY + G +  A  +F  M
Sbjct: 449 YVILLNACVNPTALHWGREIHSRVVKDGF-MFDISVQNALISMYARCGSIKDARLLFNKM 507

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              DIISW ++I G   SG G  AL  F  M+ +G  P+  T + ++NAC+    LD G+
Sbjct: 508 VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGR 567

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++    ++ G  +++ V +  ++++S C  ++D+ ++F+++ + D    N MI  Y  + 
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHN 627

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVAS 385
            G+ AL+LF  +  E ++P + T   +L++      +E   + HS+ +K G+ S+  + +
Sbjct: 628 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGN 687

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+  YAK GS   +  +F K+ KR+++SWN I+ G  Q+GR  + L +FE +  EG+ P
Sbjct: 688 ALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKP 747

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T  ++L AC++ G +++G   F +M  ++G+ P  EHY C++DLL +AGQL +   +
Sbjct: 748 DIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEAL 807

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             TMPFQ    IW ++L A  I+G+V + E  AE  + L   +   Y  L+  YA  G W
Sbjct: 808 IKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMW 867

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           ++  +++K+M + G+ K  G SWI + ++++ F A +  H   +KIY  L  LT  M+ E
Sbjct: 868 DSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKME 927

Query: 626 GCV 628
           G V
Sbjct: 928 GYV 930



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 151/582 (25%), Positives = 276/582 (47%), Gaps = 40/582 (6%)

Query: 4   YLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           YL++      S  Y  +++ RC+  K     + +H H+ +       Y  N  +++Y + 
Sbjct: 131 YLQQQGARVNSCDYM-KMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQC 189

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
           G+ ++  Q+++++                                E  V SWN+M+ GY 
Sbjct: 190 GSIEEARQVWNKLNH-----------------------------TERTVHSWNAMVVGYV 220

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNV 180
             GY + AL++  +MQ  G+     T   LLS+  S      G++IH   +++ L L +V
Sbjct: 221 QYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARL-LFDV 279

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            + N +++MY K G ++ A  VF  ME   ++SW  +I G  + G+ E+A + F  M+  
Sbjct: 280 NVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQE 339

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G  P+  T   V+NA +    L  GK V +  +  G  S+  V +A + +++KC   +D 
Sbjct: 340 GVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDC 399

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            ++FE+L   D    N MI      G  E A E++  M RE + P + T   +L++   P
Sbjct: 400 RQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNP 459

Query: 361 PVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
              H G + HS  +K GF  +  V ++L+ MYA+ GSI  +  +F K+ ++D++SW  ++
Sbjct: 460 TALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMI 519

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            GL ++G  AE L VF+++ + GL P+R+T  ++L AC+    +D G  +   + E    
Sbjct: 520 GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE--AG 577

Query: 480 MPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           +  + H A  ++++    G +  A  +   M  Q     + +++   A +   K    + 
Sbjct: 578 LATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAHNLGKEALKLF 636

Query: 539 ERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           +R+ +  L P  + Y  +  A A  G  E    +  ++ K+G
Sbjct: 637 DRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 193/391 (49%), Gaps = 38/391 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L++ C++  +  + + IH  + K GF     + N  + +Y+R G+  D   LF+++ +K+
Sbjct: 452 LLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKD 511

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ISW   + GL KS                               G    AL +F  MQ 
Sbjct: 512 IISWTAMIGGLAKS-------------------------------GLGAEALAVFQDMQQ 540

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P+  T++ +L+  SS      G++IH  +I +GL+ ++  + N+L++MY   G + 
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA-TDAHVANTLVNMYSMCGSVK 599

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M + DI+++N++I G      G+ AL  F  ++  G  PD+ T   ++NAC 
Sbjct: 600 DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +L+  K++ +L +K G+LS++ + +A +  ++KC    D++ +F+++ + +    N 
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNA 719

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKS 375
           +I    ++G G+  L+LF+ M  E I+P   T   +LS+      +E G + F SM+   
Sbjct: 720 IIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDF 779

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
           G          ++++  + G +D   E  +K
Sbjct: 780 GITPTIEHYGCMVDLLGRAGQLD-EVEALIK 809



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 147/308 (47%), Gaps = 39/308 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A +    ++Y S +++ C S  + D+ + IH  + + G     ++ N  +++YS  G
Sbjct: 538 MQQAGLKPNRVTYTS-ILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCG 596

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMIS 120
           +  D  Q+FD + Q++ +++N  + G    +    ALK+FD + E    PD V++ +M++
Sbjct: 597 SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 656

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNV 180
             A+ G  ++A                                K+IH  +++ G  LS+ 
Sbjct: 657 ACANSGSLEWA--------------------------------KEIHSLVLKDGY-LSDT 683

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            LGN+L+  Y K G    A  VF  M + ++ISWN++I GC   G G+  L  F  M+  
Sbjct: 684 SLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKME 743

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           G  PD  T   +++AC+    L++G++ F ++S   G           +DL  +  +L++
Sbjct: 744 GIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDE 803

Query: 300 SVRLFEQL 307
              L + +
Sbjct: 804 VEALIKTM 811


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/613 (30%), Positives = 324/613 (52%), Gaps = 41/613 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           +QL+  C+     + AK +  H+    F    ++L N+ L LY++FG   D   LFD++ 
Sbjct: 26  TQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML 85

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +++  SWN  L    KS ++      FD +P  D VS+N+ I+G++       +LE+F +
Sbjct: 86  KRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKR 145

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           MQ +G  P+ +T   +L+    +S   +GKQIHGS+I     L NV + N+L DMY K G
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNF-LGNVFIWNALTDMYAKCG 204

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  +F  + + +++SWN +ISG   +G  E  +   + MR SG+ PD+ T+S +I 
Sbjct: 205 EIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA 264

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A                                   + +C R++++ R+F +    D   
Sbjct: 265 A-----------------------------------YCQCGRVDEARRVFSEFKEKDIVC 289

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
              M+  Y + G  E AL LF  ML E I P  +TLS V+SS   +  + HG   H  +I
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
            +G ++N +V+S+L++MY+K G ID +  +F  +  R++VSWN +++G  QNG   + L+
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALE 409

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +FE +L++   PD +T   +L AC +  ++++G   F ++  ++G+ P  +HYAC+++LL
Sbjct: 410 LFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLL 469

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            + G++ +A+ +   M   P   IW ++L   +  GD+   E  A  + +L     +PY 
Sbjct: 470 GRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYI 529

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           +L+  YA  GRW+ +  V+ +M+   + K  G SWI I N ++ F + +  H   + IY 
Sbjct: 530 MLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYE 589

Query: 614 VLRLLTWEMEDEG 626
            L +L  ++++EG
Sbjct: 590 KLNMLIGKLQEEG 602


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 323/613 (52%), Gaps = 41/613 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           +QL+  C+     + AK +  H+    F    ++L N+ L LY++FG   D   LFD++ 
Sbjct: 26  TQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML 85

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +++  SWN  L    KS ++      FD +P  D VS+N+ I+G++       +LE+F +
Sbjct: 86  KRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKR 145

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           MQ +G  P+ +T   +L+  +      +GKQIHGS+I     L NV + N+L DMY K G
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNF-LGNVFIWNALTDMYAKCG 204

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  +F  + + +++SWN +ISG   +G  E  +   + MR SG+ PD+ T+S +I 
Sbjct: 205 EIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIA 264

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A                                   + +C R++++ R+F +    D   
Sbjct: 265 A-----------------------------------YCQCGRVDEARRVFSEFKEKDIVC 289

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
              M+  Y + G  E AL LF  ML E I P  +TLS V+SS   +  + HG   H  +I
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
            +G ++N +V+S+L++MY+K G ID +  +F  +  R++VSWN +++G  QNG   + L+
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALE 409

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +FE +L++   PD +T   +L AC +  ++++G   F ++  ++G+ P  +HYAC+++LL
Sbjct: 410 LFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLL 469

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            + G++ +A+ +   M   P   IW ++L   +  GD+   E  A  + +L     +PY 
Sbjct: 470 GRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYI 529

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           +L+  YA  GRW+ +  V+ +M+   + K  G SWI I N ++ F + +  H   + IY 
Sbjct: 530 MLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYE 589

Query: 614 VLRLLTWEMEDEG 626
            L +L  ++++EG
Sbjct: 590 KLNMLIGKLQEEG 602


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/624 (31%), Positives = 330/624 (52%), Gaps = 36/624 (5%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S      A  +HG   K  F   T +    LD+Y + G  D   ++F   P  +   WN 
Sbjct: 126 SLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNS 185

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
            + G  K  ++  AL++F ++PE D VSWN+MIS  +  G+    L  F +M  QG RP+
Sbjct: 186 MIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPN 245

Query: 147 GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T++ +LS  +S      G  +H  ++R    L +V  G  LIDMY K G L  A  VF
Sbjct: 246 SMTYASVLSACTSIYDLEWGAHLHARIVRMEPCL-DVYAGCGLIDMYAKCGRLESARQVF 304

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             + E + +SW SLI G   +G+ E AL  F  MR    + D++T++ V+  C   +++ 
Sbjct: 305 DGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDIS 364

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL-------------------------- 297
            G+Q+ A ++  G  S+  V +A + +++KC  +                          
Sbjct: 365 IGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFS 424

Query: 298 -----EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
                E +   F+++   +    N M++TY + G+ E  L+++  MLRE ++    T S 
Sbjct: 425 QAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFST 484

Query: 353 VLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
            +S+   +  +  G+Q  + A K GF SN  VA+S++ MY++ G I+ + ++F  +  ++
Sbjct: 485 SISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKN 544

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           LVSWN +M G  QNG+  + +++FE++L  G  PD+I+  +VL  C++ GFV +G   F 
Sbjct: 545 LVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFL 604

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
           +M +++G+ P  EH+ C++DLL +AGQL +A ++ + MPF+P  +IW ++L A  I+G+ 
Sbjct: 605 SMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNT 664

Query: 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
           KL E   + +++L    P  Y LL   Y+  G+ + +  V+K+MR  G+ K  GCSWI +
Sbjct: 665 KLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEV 724

Query: 592 KNRIYTFNAGELQHHGGQKIYLVL 615
            NR++ F   +  H   + ++ +L
Sbjct: 725 DNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 157/586 (26%), Positives = 260/586 (44%), Gaps = 68/586 (11%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S +S   A+ +H  L  +G  +  +L N  L++YS  G   D  ++F  I   N 
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY-------------ASCGYS 128
            SWN  + G   S  +  A K+F+++PE D VSWNSM+SGY              S GY 
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYL 130

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLG 183
             AL      QL G     F F I     +S        G       +       ++   
Sbjct: 131 KLAL------QLHGF-AEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCW 183

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           NS+I  Y K G +  A  +F  M E D +SWN++IS     G+G   L+ F  M   G+ 
Sbjct: 184 NSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFR 243

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+  T + V++ACT + +L+ G  + A  V++    +       ID+++KC RLE + ++
Sbjct: 244 PNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQV 303

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPV 362
           F+ L   +      +I    + GF E AL LF  M    +   +FTL+ VL   +    +
Sbjct: 304 FDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDI 363

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAK----------------------------- 393
             G Q H+  I  G DS+  VA++L+ MYAK                             
Sbjct: 364 SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAF 423

Query: 394 --TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
              G ++ + E F K+ +R+++SWN+++    Q G   E L V+ ++L EG+  D IT +
Sbjct: 424 SQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFS 483

Query: 452 AVLLACNYGGFVDKGMLVFS----AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
             + AC      D  +L+      A  E+ G          ++ +  + GQ+ +A  + S
Sbjct: 484 TSISAC-----ADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFS 538

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL-QLPSPLPY 552
           ++  +   S W +++   A  G  +    + E+M+++  +P  + Y
Sbjct: 539 SIVMKNLVS-WNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISY 583



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 146/291 (50%), Gaps = 13/291 (4%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CLS K     + +H H    G ++   + N  + +Y++ G        F+ +P ++ ISW
Sbjct: 357 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 416

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
              +    ++ +++ A + FD++PE +V+SWNSM++ Y   GY +  L+++ +M  +GV+
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476

Query: 145 PSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
               TF    ST  SAC        G QI     + G S SNV + NS++ MY + G + 
Sbjct: 477 TDWITF----STSISACADLAVLILGNQILAQAEKLGFS-SNVSVANSVVTMYSRCGQIE 531

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F ++   +++SWN++++G   +G G   ++ F  M   G  PD+ +   V++ C+
Sbjct: 532 EAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCS 591

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
               + +G+  F +++   G    S      +DL  +  +LE +  L  Q+
Sbjct: 592 HSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQM 642



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 122/539 (22%), Positives = 219/539 (40%), Gaps = 100/539 (18%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S++Y S ++  C S    ++   +H  + ++      Y G   +D+Y++ G  +   Q+F
Sbjct: 246 SMTYAS-VLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVF 304

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           D + + N +SW   + G+ ++   + AL +F+++ E  V S                  +
Sbjct: 305 DGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS------------------D 346

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            F+   + GV  S    SI          G+Q+H   I  GL  S+V + N+L+ MY K 
Sbjct: 347 QFTLATVLGVCLSQKDISI----------GEQLHAHTITRGLD-SSVPVANALVTMYAKC 395

Query: 194 GVLY---YAFGV----------------------------FLNMEELDIISWNSLISGCF 222
           G ++   +AF +                            F  M E ++ISWNS+++   
Sbjct: 396 GDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYM 455

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             GY E  L  +  M   G   D  T S  I+AC  L  L  G Q+ A + K+GF SN  
Sbjct: 456 QRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVS 515

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ + ++S+C ++E++ ++F  +   +    N M++ Y + G G   +E+F+ ML   
Sbjct: 516 VANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIG 575

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P + +   VLS           Q++ +++                   K   I   +E
Sbjct: 576 NVPDQISYVSVLSGCSHSGFVSEGQYYFLSM------------------TKDHGISPMSE 617

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
            FV +   DL+            GRA +       + +    P+     A+L AC   G 
Sbjct: 618 HFVCM--VDLL------------GRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGN 663

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ-----PGCS 516
                L    + E     PG   Y  + ++  ++G++    ++   M  +     PGCS
Sbjct: 664 TKLAELAVKNLLELDAEGPGS--YCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCS 720


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 332/611 (54%), Gaps = 36/611 (5%)

Query: 20   QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
             L+  C +  ++   K IH  + + G  ++ +L N  +++Y R G+              
Sbjct: 491  HLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGS-------------- 536

Query: 80   NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                       ++++ N      VF+     D++SWNSMI+G+A  G  + A ++F +M+
Sbjct: 537  -----------IMEAQN------VFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMK 579

Query: 140  LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             +G+ P   TF+ +L    +      G+QIH  +I SGL L +V LGN+LI+MY + G L
Sbjct: 580  KEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL-DVNLGNALINMYIRCGSL 638

Query: 197  YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
              A+ VF ++   +++SW ++I G  + G    A + F+ M+  G+ P + T S ++ AC
Sbjct: 639  QDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKAC 698

Query: 257  TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                 LD+GK+V A  +  G+  ++ V +A I  +SK   + D+ ++F+++   D    N
Sbjct: 699  MSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWN 758

Query: 317  VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
             MI+ Y + G G  AL+    M  + +   +F+   +L++      +E G + H+  +K 
Sbjct: 759  KMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR 818

Query: 376  GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
                +  V ++L+ MYAK GS++ + E+F    ++++V+WN ++    Q+G A++ LD F
Sbjct: 819  KMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFF 878

Query: 436  EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
              + +EG+ PD  T  ++L ACN+ G V +G  +FS+++ ++G+ P  EHY C++ LL +
Sbjct: 879  NCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGR 938

Query: 496  AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            AG+  +A  + + MPF P  ++WE++L A  I+G+V L E+ A   + L   +P  Y LL
Sbjct: 939  AGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLL 998

Query: 556  TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
            +  YA  GRW+ + ++++VM   GI K  G SWI + N I+ F A +  H    +IY  L
Sbjct: 999  SNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEEL 1058

Query: 616  RLLTWEMEDEG 626
            + L+ EME  G
Sbjct: 1059 KRLSLEMERAG 1069



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 259/514 (50%), Gaps = 40/514 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C + K+    + IH H+ ++G ++   +GN  + +Y+R G                
Sbjct: 391 VLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCG---------------- 434

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +L  A ++F+ +P+ D++SWN++I+GYA       A++++ +MQ 
Sbjct: 435 ---------------DLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 141 QGVRPSGFTFSILLS--TVSSA-CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +GV+P   TF  LLS  T SSA   GK IH  ++RSG+  SN  L N+L++MY + G + 
Sbjct: 480 EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIK-SNGHLANALMNMYRRCGSIM 538

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF      DIISWNS+I+G    G  E A   F  M+  G  PD+ T + V+  C 
Sbjct: 539 EAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCK 598

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L+ G+Q+  L ++ G   +  + +A I+++ +C  L+D+  +F  L   +      
Sbjct: 599 NPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTA 658

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSG 376
           MI  +   G    A ELF  M  +  +P + T S +L + +    ++ G +  +  + SG
Sbjct: 659 MIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSG 718

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++ +  V ++L+  Y+K+GS+  + ++F K+  RD++SWN ++ G  QNG     L    
Sbjct: 719 YELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAY 778

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-ACIIDLLCQ 495
           ++ E+G+  ++ +  ++L AC+    +++G  V + + +    M G+    A +I +  +
Sbjct: 779 QMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRK--MQGDVRVGAALISMYAK 836

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            G L +A ++      +     W +++ A A +G
Sbjct: 837 CGSLEEAQEVFDNFT-EKNVVTWNAMINAYAQHG 869



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 215/453 (47%), Gaps = 37/453 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   +S   AK IH  + + G     +L N  +++Y                    
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMY-------------------- 127

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                      +K  ++  A +VF ++P  DV+SWNS+IS YA  G+   A ++F +MQ 
Sbjct: 128 -----------VKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQT 176

Query: 141 QGVRPSGFTF-SILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS  T+ SIL +  S A   +GK+IH  +I +G      V  NSL++MYGK   L 
Sbjct: 177 AGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQ-NSLLNMYGKCEDLP 235

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   D++S+N+++       Y E  +  F  M   G  PD+ T   +++A T
Sbjct: 236 SARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFT 295

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               LD+GK++  L+V  G  S+  V +A   +F +C  +  + +  E     D  V N 
Sbjct: 296 TPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNA 355

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSG 376
           +I+   ++G  E A E +  M  + +     T   VL++      +  G   HS   + G
Sbjct: 356 LIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG 415

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S+  + +SL+ MYA+ G +  + E+F  + KRDL+SWN I+ G  +     E + +++
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYK 475

Query: 437 ELLEEGLPPDRITLAAVLLAC-NYGGFVDKGML 468
           ++  EG+ P R+T   +L AC N   + D  M+
Sbjct: 476 QMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMI 508



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 219/449 (48%), Gaps = 37/449 (8%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           + ++Y S ++  C S    ++ K IH  + + G+     + N  L++Y            
Sbjct: 182 SKITYIS-ILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYG----------- 229

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
                               K ++L +A +VF  I   DVVS+N+M+  YA   Y +  +
Sbjct: 230 --------------------KCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECI 269

Query: 133 EMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F +M  +G+ P   T+  LL   +T S    GK+IH   +  GL+ S++ +G +L  M
Sbjct: 270 GLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLN-SDIRVGTALATM 328

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           + + G +  A        + D++ +N+LI+     G+ E A +Q+Y MR  G   +  T 
Sbjct: 329 FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             V+NAC+  + L  G+ + +   +VG  S+  + ++ I ++++C  L  +  LF  + +
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK 448

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQF 368
            D    N +I+ Y R      A++L++ M  E ++P   T   +LS+         G   
Sbjct: 449 RDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMI 508

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H   ++SG  SN  +A++LM MY + GSI  +  +F     RD++SWN+++ G  Q+G  
Sbjct: 509 HEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSY 568

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLAC 457
                +F E+ +EGL PD+IT A+VL+ C
Sbjct: 569 EAAYKLFLEMKKEGLEPDKITFASVLVGC 597



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
           S    K+IH  M+ +G+   ++ L N LI+MY K   +  A  VFL M   D+ISWNSLI
Sbjct: 97  SLAEAKRIHAQMVEAGVG-PDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLI 155

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           S     G+ + A   F  M+ +G+ P + T   ++ AC     L+ GK++ +  ++ G+ 
Sbjct: 156 SCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQ 215

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +  V ++ ++++ KC  L  + ++F  + R D    N M+  Y +  + E  + LF  M
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM 275

Query: 339 LREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E I P + T   +L +   P  ++ G + H +A+  G +S+  V ++L  M+ + G +
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDV 335

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             + +       RD+V +N ++  L Q+G   E  + + ++  +G+  +R T  +VL AC
Sbjct: 336 AGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNAC 395

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           +    +  G L+ S +  E G     +    +I +  + G L +A ++ +TMP +   S 
Sbjct: 396 STSKALGAGELIHSHIS-EVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLIS- 453

Query: 518 WESILRASAIYGD 530
           W +I+   A   D
Sbjct: 454 WNAIIAGYARRED 466


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 215/686 (31%), Positives = 342/686 (49%), Gaps = 90/686 (13%)

Query: 25  CLSFK--SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCI 82
           CL  +  S   A+ +HG++   GF  H ++ NR +D+Y +    D   QLFDEI + + I
Sbjct: 22  CLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKI 81

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIPEP--DVVSWNSMISGYA--SCGYSDYALEMFSKM 138
           +    + G   S ++  A  VF+E P    D V +N+MI+G++  + GYS  A+ +F KM
Sbjct: 82  ARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYS--AINLFCKM 139

Query: 139 QLQGVRPSGFTFSILLS----TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           + +G +P  FT++ +L+     V       Q H + ++SG      V  N+L+ +Y +  
Sbjct: 140 KHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSV-SNALVSVYSRCA 198

Query: 195 ----VLYYAFGVFLNMEELDIISW--------------------------------NSLI 218
               +L+ A  VF ++ E D  SW                                N++I
Sbjct: 199 SSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMI 258

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           SG  N G  + AL+    M  SG   DE+T   VI AC   R L  GKQV A  ++    
Sbjct: 259 SGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF 318

Query: 279 S----NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN------------------ 316
           S    NS+V      L+ KC +  ++  +FE++   D    N                  
Sbjct: 319 SFHFDNSLVT-----LYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 317 -------------VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE 363
                        +MIS     GFGE  L+LF  M RE   P ++  S  + S  +    
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433

Query: 364 -HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            +G QFH+  +K GFDS+    ++L+ MYAK G ++ + ++F  +   D VSWN ++  L
Sbjct: 434 CNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAAL 493

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            Q+G   E +DV+EE+L++G+ PDRIT   VL AC++ G VD+G   F++M+  Y + PG
Sbjct: 494 GQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPG 553

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            +HYA +IDLLC++G+  +A  I  ++PF+P   IWE++L    ++G+++L    A+++ 
Sbjct: 554 ADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
            L       Y LL+  YA  G+WE + RV+K+MR  G+ K   CSWI ++ +++TF   +
Sbjct: 614 GLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD 673

Query: 603 LQHHGGQKIYLVLRLLTWEMEDEGCV 628
             H   + +Y  L+ L  EM   G V
Sbjct: 674 TSHPEAEAVYKYLQDLGKEMRRLGYV 699



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKL-GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +I  C + +     K +H ++ +   F+ H    N  + LY + G  ++   +F+++P K
Sbjct: 292 VIRACANARLLQLGKQVHAYVLRREDFSFH--FDNSLVTLYYKCGKFNEARAIFEKMPAK 349

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + +SWN  L G + S ++  A  +F E+ E +++SW  MISG A  G+ +  L++FS M+
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409

Query: 140 LQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G  P  + FS  + + +   + C+G+Q H  +++ G   S++  GN+LI MY K GV+
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFD-SSLSAGNALITMYAKCGVV 468

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  M  LD +SWN+LI+     G+G  A+D +  M   G  PD  T   V+ AC
Sbjct: 469 EEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTAC 528

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +D+G++ F ++         +   +  IDL  +  +  ++  + E L
Sbjct: 529 SHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESL 580



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  I  C    ++   +  H  L K+GF++    GN  + +Y++ G  ++  Q+F  +P 
Sbjct: 421 SGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC 480

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
            + +SWN  +  L +  +   A+ V++E+ +    PD +++ ++++  +  G  D   + 
Sbjct: 481 LDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKY 540

Query: 135 FSKMQLQGVRPSG 147
           F+ M+     P G
Sbjct: 541 FNSMETVYRIPPG 553


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 197/626 (31%), Positives = 333/626 (53%), Gaps = 37/626 (5%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++       S+++ S ++  C S    +F   +HG +   GF+    + N  + +YS+FG
Sbjct: 64  MRNCQTKPNSITFAS-VLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFG 122

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                           L  ALK+F+ +P+ +VV+WN MI+G+  
Sbjct: 123 -------------------------------QLSDALKLFNTMPDTNVVTWNGMIAGFVQ 151

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G+ D A  +FS+M   GV P   TF+  L +V+ +     GK+IHG ++R G++L +V 
Sbjct: 152 NGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIAL-DVF 210

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L ++LID+Y K   +  A  +F     +DI+   ++ISG   +G    AL+ F  +    
Sbjct: 211 LKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEK 270

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            SP+  T++ V+ AC  L  L+ GK++ A  +K G      V SA +D+++KC RL+ + 
Sbjct: 271 MSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAY 330

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           ++F ++   D    N +I+   + G  + A++LF+ M RE +     ++S  LS+   +P
Sbjct: 331 QIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLP 390

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            + HG   HS  IK  FDS     S+L++MY K G++  +  +F  + +++ VSWN+I+ 
Sbjct: 391 ALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIA 450

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
               +G    +L +F ++LE+G+ PD +T   +L AC + G VDKG+  F  M EEYG+ 
Sbjct: 451 AYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIP 510

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
              EHYACI+DL  +AG+L +A +    MPF P   +W ++L A  ++G+V+L E  +  
Sbjct: 511 ARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRC 570

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++DL   +   Y LL+  +A  G+W ++ +++ +M+K G+ KV G SWI +    + F A
Sbjct: 571 LLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVA 630

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  H    +IY VL  L  E+  EG
Sbjct: 631 ADGSHPESAQIYSVLNNLLLELRKEG 656



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 254/505 (50%), Gaps = 40/505 (7%)

Query: 44  LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKV 103
           +GFN   ++G+  + LY+  G  +D                               A ++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIED-------------------------------ARRL 29

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-- 161
           FD++P  D V WN M++G+  CG  + A+++F  M+    +P+  TF+ +LS  +S    
Sbjct: 30  FDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALS 89

Query: 162 -HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             G Q+HG +I  G     +V  N+L+ MY K G L  A  +F  M + ++++WN +I+G
Sbjct: 90  EFGNQLHGLVISCGFHFDPLV-ANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAG 148

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +G+ + A   F  M  +G SPD  T +  + + T+  +L +GK++    ++ G   +
Sbjct: 149 FVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALD 208

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             + SA ID++ KC  +  + ++F+Q    D  V   +IS Y   G    ALE+F+ +L 
Sbjct: 209 VFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLE 268

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E + P   TL+ VL +   +  +  G + H+  +K G D    V S++M+MYAK G +D 
Sbjct: 269 EKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDL 328

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           + +IF ++ ++D V WN I+   +QNG+  E +D+F ++  EGL  D ++++A L AC  
Sbjct: 329 AYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACAN 388

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHY-ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
              +  G  + S M +  G    E    + +ID+  + G L  A  +   M  +   S W
Sbjct: 389 LPALHHGKAIHSFMIK--GAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVS-W 445

Query: 519 ESILRASAIYGDVKLTENVAERMMD 543
            SI+ A   +G ++++  +  +M++
Sbjct: 446 NSIIAAYGSHGHLEVSLALFHKMLE 470


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 191/536 (35%), Positives = 305/536 (56%), Gaps = 7/536 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLS 155
           +  A +VFD++P  + VSW +M+SGYA+   S+ A E+F  M Q   +  + F  + +LS
Sbjct: 174 ISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLS 233

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            VS       G Q+HG +++ GL +  V + NSL+ MY K   +  A  VF + +E + I
Sbjct: 234 AVSVPLGLLIGVQLHGLVLKDGL-VGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSI 292

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +W+++I+G   +G  + A   F  M  +G+SP E+T   ++NA + +  L  GKQ   L 
Sbjct: 293 TWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLM 352

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVA 331
           VK+GF     V SA +D+++KC    D+   F QL D  D  +   MI+ + + G  E A
Sbjct: 353 VKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEA 412

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L L+  M +E + P+  T++ VL +   +  +E G Q H+  +K GF     V ++L  M
Sbjct: 413 LMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTM 472

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K G+++ S  +F ++  RD++SWN+I+ G +Q+GR  + LD+FEE+  EG+ PD IT 
Sbjct: 473 YSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITF 532

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             VL AC++ G VD+G   F AM ++YG++P  +HYACI+D+L +AGQL +A D   ++ 
Sbjct: 533 INVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESIT 592

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
              G  +W  +L A     D  +     E++M+L       Y LL+  YA + +W  + R
Sbjct: 593 IDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVER 652

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           V+ +MR  G++K  GCSW+ + N++  F  GE QH   +KI + L  L   M+DEG
Sbjct: 653 VRHLMRLRGVSKDPGCSWVELNNQVNVFVVGEQQHPEAEKINVELIRLAKHMKDEG 708



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/266 (34%), Positives = 143/266 (53%), Gaps = 5/266 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K++ +D A+ VF    E + ++W++MI+GYA  G +D A  MF +M   G  P+ FTF  
Sbjct: 272 KAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVG 331

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   S + +   GKQ HG M++ G     V + ++L+DMY K G    A   F  + ++
Sbjct: 332 ILNASSDMGALVVGKQAHGLMVKLGFE-RQVYVKSALVDMYAKCGCTGDAKDGFHQLYDV 390

Query: 210 -DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++ W ++I+G   +G  E AL  +  M   G  P   T++ V+ AC  L  L+ GKQ+
Sbjct: 391 DDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQL 450

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A  +K GF     V +A   ++SKC  LEDS+ +F ++   D    N +IS + ++G G
Sbjct: 451 HAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRG 510

Query: 329 EVALELFQLMLREDIRPTEFTLSCVL 354
             AL+LF+ M  E I P   T   VL
Sbjct: 511 RDALDLFEEMKLEGIAPDHITFINVL 536



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 179/373 (47%), Gaps = 13/373 (3%)

Query: 97  LDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKM--QLQGVRPSGFTFSI 152
           L  A  VF +IP    DV SWNS+++   S      AL  F  M      V P+  +F+ 
Sbjct: 67  LGAAFAVFADIPAGLRDVASWNSLLNPL-SRHQPLAALSHFRSMMSSTDAVLPTPHSFAA 125

Query: 153 LLST---VSSACHGKQIHGSMIR--SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + +    V SA  G   H    +  S    +NV +  +L++MY KLG +  A  VF  M 
Sbjct: 126 VFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMP 185

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGK 266
             + +SW +++SG       E A + F  M +      +E+  + V++A +    L  G 
Sbjct: 186 HRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGV 245

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+  L +K G +    V ++ + +++K   ++ ++ +F      +    + MI+ Y + G
Sbjct: 246 QLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNG 305

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             + A  +F  M      PTEFT   +L +S  +  +  G Q H + +K GF+    V S
Sbjct: 306 EADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKS 365

Query: 386 SLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +L++MYAK G    + + F +L D  D+V W  ++ G  QNG   E L ++  + +EG+ 
Sbjct: 366 ALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVM 425

Query: 445 PDRITLAAVLLAC 457
           P  +T+ +VL AC
Sbjct: 426 PSYLTVTSVLRAC 438



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 39/279 (13%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K  HG + KLGF    Y+ +  +D+Y++ G + D    F ++   +              
Sbjct: 346 KQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVD-------------- 391

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                           DVV W +MI+G+   G  + AL ++S+M  +GV PS  T + +L
Sbjct: 392 ----------------DVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVL 435

Query: 155 STVSSAC-----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
              + AC      GKQ+H  +++ G  L   V G +L  MY K G L  +  VF  M + 
Sbjct: 436 R--ACACLAALEPGKQLHAQILKCGFGLGGSV-GTALSTMYSKCGNLEDSMVVFRRMPDR 492

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DIISWNS+ISG    G G  ALD F  M+  G +PD  T   V+ AC+ +  +D+G   F
Sbjct: 493 DIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYF 552

Query: 270 -ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            A+S   G +      +  +D+ S+  +L+++    E +
Sbjct: 553 RAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESI 591



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 31/140 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    + +  K +H  + K GF     +G     +YS+ G              
Sbjct: 432 TSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCG-------------- 477

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            NL+ ++ VF  +P+ D++SWNS+ISG++  G    AL++F +M
Sbjct: 478 -----------------NLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEM 520

Query: 139 QLQGVRPSGFTFSILLSTVS 158
           +L+G+ P   TF  +L   S
Sbjct: 521 KLEGIAPDHITFINVLCACS 540



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 12/213 (5%)

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR--LEDSVRLFEQLDRW-- 310
           A + +R    G  +   ++K G  S++ V ++ I  +    R  L  +  +F  +     
Sbjct: 23  AASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLR 82

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLR--EDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
           D A  N +++   R+     AL  F+ M+   + + PT  + + V ++   +P    G+ 
Sbjct: 83  DVASWNSLLNPLSRHQ-PLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAV 141

Query: 368 FHSMAIK---SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
            H+ A K   S   +N  V+++L+ MY K G+I  +  +F ++  R+ VSW  ++ G   
Sbjct: 142 AHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYAT 201

Query: 425 NGRAAETLDVFEELLEE-GLPPDRITLAAVLLA 456
              + E  ++F  +L+E  L  +     AVL A
Sbjct: 202 GKCSEEAFELFRLMLQECPLEKNEFVATAVLSA 234


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/608 (30%), Positives = 327/608 (53%), Gaps = 36/608 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C + K+    + IH  + K G+  + ++G   +D+YS+ G + D          
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID---------- 367

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A+ VF  I +PD+V W+++I+     G S+ ++++F  M
Sbjct: 368 ---------------------AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L    P+ +T   LLS  ++     +G+ IH  + + G   ++V + N+L+ MY K G 
Sbjct: 407 RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE-TDVAVSNALVTMYMKNGC 465

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           ++    ++ +M + D+ISWN+ +SG  + G  +  L  FY M   G+ P+ YT   ++ +
Sbjct: 466 VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ L ++  G+QV A  +K     N+ V +A ID+++KC  LED+   F +L   D    
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTW 585

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMAIK 374
            V+I+ Y +   GE AL  F+ M +E ++P EFTL+ C+     +  +E G Q HSM  K
Sbjct: 586 TVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK 645

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG  S+  V S+L++MYAK G ++ +  +F  L +RD ++WNTI+ G  QNG+  + L  
Sbjct: 646 SGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTA 705

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +L+EG+ PD +T   +L AC++ G V++G   F++M  ++G+ P  +H AC++D+L 
Sbjct: 706 FRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILG 765

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G+  +  D    M       IWE++L AS ++ ++ L E  A ++ +LQ      Y L
Sbjct: 766 RVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYIL 825

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A  GRW+ + RV+ +M   G+ K  GCSW+    +++TF + +  H   Q+I+L 
Sbjct: 826 LSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLK 885

Query: 615 LRLLTWEM 622
           L  L  E+
Sbjct: 886 LDELDREL 893



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 228/452 (50%), Gaps = 36/452 (7%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           +K  L Y S ++  C S +S   AK IHG + K   N  ++L    +++Y++   S    
Sbjct: 108 SKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYAR 167

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +  ++P ++ +SW   ++GL+                                 G+++ 
Sbjct: 168 LVLAKMPDRDVVSWTALIQGLVAE-------------------------------GFAND 196

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
           ++ +F +MQ +G+ P+ FT +  L   S       GKQ+H    + GL L ++ +G++L+
Sbjct: 197 SIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGL-LLDLFVGSALV 255

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D+Y K G +  A  +F+ M E + ++WN L++G    G     L  F SM       +E+
Sbjct: 256 DLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEF 315

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T++ V+  C   +NL +G+ + +L +K G+  N  +    +D++SKC    D++ +F+ +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
            + D  V + +I+   + G  E +++LF LM   D  P ++T+  +LS+      +++G 
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H+   K GF+++  V+++L+ MY K G +   T+++  +  RDL+SWN  + GL   G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                L +F  +LEEG  P+  T  ++L +C+
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 210/433 (48%), Gaps = 36/433 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D  K +H   FKLG     ++G+  +DLY++ G                         
Sbjct: 228 ALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG------------------------- 262

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  ++ A K+F  +PE + V+WN +++GYA  G     L++F  M    V+ + FT
Sbjct: 263 ------EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFT 316

Query: 150 FSILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + +L   +++ + KQ   IH  +I+ G    N  +G  L+DMY K G+   A GVF  +
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYE-GNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           ++ DI+ W++LI+     G  E ++  F+ MR     P++YTI  +++A T   NL  G+
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            + A   K GF ++  V +A + ++ K   + D  +L+E +   D    N  +S     G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             +  L +F  ML E   P  +T   +L S   +  V +G Q H+  IK+  D N  V +
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L++MYAK   ++ +   F +L  RDL +W  I+    Q  +  + L+ F ++ +EG+ P
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKP 615

Query: 446 DRITLAAVLLACN 458
           +  TLA  L  C+
Sbjct: 616 NEFTLAGCLSGCS 628



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 165/312 (52%), Gaps = 2/312 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            K IHG +++  ++  +  L  SL+++Y K     YA  V   M + D++SW +LI G  
Sbjct: 131 AKAIHGLIVKDVIN-PDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLV 189

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G+   ++  F  M+  G  P+E+T++  + AC+    LD GKQ+ A + K+G L +  
Sbjct: 190 AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF 249

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V SA +DL++KC  +E + ++F  +   +    NV+++ Y + G     L+LF  M+  D
Sbjct: 250 VGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELD 309

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++  EFTL+ VL        ++ G   HS+ IK G++ N  +   L++MY+K G    + 
Sbjct: 310 VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  + K D+V W+ ++  L Q G++ E++ +F  +      P++ T+ ++L A    G
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 462 FVDKGMLVFSAM 473
            +  G  + + +
Sbjct: 430 NLQYGQSIHACV 441



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 37/187 (19%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N+ +L+ C   +  C S  S +  + +H  +FK G  +  ++G+  +D+Y++ G  ++  
Sbjct: 616 NEFTLAGC---LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            LF+ + +++ I+WN                               ++I GYA  G  + 
Sbjct: 673 ALFEALIRRDTIAWN-------------------------------TIICGYAQNGQGNK 701

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL  F  M  +G+ P G TF+ +LS  S       GK+   SM R       V     ++
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 188 DMYGKLG 194
           D+ G++G
Sbjct: 762 DILGRVG 768


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 301/530 (56%), Gaps = 5/530 (0%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS--TV 157
           A KVFD IPE + VSW ++ISGYA    +  A E+F  M+ +      F ++ +LS  TV
Sbjct: 167 ARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTV 226

Query: 158 SSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
               H GKQIH   +++GL LS   +GN+L+ MYGK G L  A   F    + D I+W++
Sbjct: 227 PDLVHYGKQIHCLALKNGL-LSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSA 285

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G   +G    AL+ FY+M  +G  P E+T   VINAC+ +  L++GKQ+   S+K G
Sbjct: 286 MITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           +      ++A +D+++KC  L D+ + F+ L   D  +   MIS Y + G  E AL L+ 
Sbjct: 346 YECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYC 405

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M  E I P E T++ VL +   +  +E G Q H+  IK GF     + S+L  MYAK G
Sbjct: 406 RMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCG 465

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S++    +F ++  RD+++WN ++ GL+QNG   + L++FEEL      PD +T   VL 
Sbjct: 466 SLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLS 525

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G V++G + F  M +E+G++P  EHYAC++D+L +AG+L +  +   +     G 
Sbjct: 526 ACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGM 585

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            +W  +L A   Y + +L     E++M+L       Y LL+  Y   GR + + RV+++M
Sbjct: 586 CLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLM 645

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  G+NK  GCSWI +K++++ F  G+  H    KI   LR L   M+DE
Sbjct: 646 KLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMKDE 695



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 230/453 (50%), Gaps = 40/453 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC   K     K IH  L + G  +  YL N  ++LY++ G+               
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS--------------- 60

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA---SCGYSDYALEMFSK 137
                           +  A  VF+ I   DVVSWN +I+GY+   + GYS + +E+F +
Sbjct: 61  ----------------IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYS-FVMELFQR 103

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+ +   P+G TFS + +  SS+     G Q H   I++  +  +V +G+SLI+MY K+G
Sbjct: 104 MRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTS-NFYDVFVGSSLINMYCKIG 162

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  + E + +SW ++ISG         A + F  MR    + D++  + V++
Sbjct: 163 CMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLS 222

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A T    +  GKQ+  L++K G LS + V +A + ++ KC  L+D+++ FE     D   
Sbjct: 223 ALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDIT 282

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            + MI+ Y + G    AL LF  M     +P+EFT   V+++   I  +E G Q H  ++
Sbjct: 283 WSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSL 342

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+G++      ++L++MYAK GS+  + + F  L + D+V W +++ G  QNG     L 
Sbjct: 343 KAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALT 402

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           ++  +  E + P  +T+A+VL AC+    +++G
Sbjct: 403 LYCRMQMERIMPHELTMASVLRACSSLAALEQG 435



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 198/410 (48%), Gaps = 22/410 (5%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK IH  ++R+G S S+V L NSL+++Y K G +  A  VF ++   D++SWN LI+G  
Sbjct: 29  GKAIHAQLLRTG-SFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYS 87

Query: 223 NSGYG--ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             G       ++ F  MR     P+ +T S V  A +       G Q  AL++K     +
Sbjct: 88  QKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYD 147

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V S+ I+++ K   + D+ ++F+ +   +      +IS Y        A ELF LM R
Sbjct: 148 VFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRR 207

Query: 341 EDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E+    +F  + VLS++ +P + H G Q H +A+K+G  S A V ++L+ MY K G +D 
Sbjct: 208 EEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDD 267

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           + + F     +D ++W+ ++ G  Q G + E L++F  +   G  P   T   V+ AC+ 
Sbjct: 268 ALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSD 327

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEE----HYACIIDLLCQAGQLGKAIDITSTMPF--QP 513
            G +++G  +       Y +  G E        ++D+  + G L   +D      +  +P
Sbjct: 328 IGALEEGKQIHG-----YSLKAGYECQIYFMTALVDMYAKCGSL---VDARKGFDYLKEP 379

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
              +W S++   A  G+ +    +  RM   Q+   +P+  LT A  +R 
Sbjct: 380 DIVLWTSMISGYAQNGENETALTLYCRM---QMERIMPHE-LTMASVLRA 425



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 198/419 (47%), Gaps = 44/419 (10%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + K IH    K G  +   +GN  + +Y + G  DD L+ F+    K+ I+W        
Sbjct: 232 YGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITW-------- 283

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                                  ++MI+GYA  G S  AL +F  M L G +PS FTF  
Sbjct: 284 -----------------------SAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVG 320

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++   S + +   GKQIHG  +++G     +    +L+DMY K G L  A   F  ++E 
Sbjct: 321 VINACSDIGALEEGKQIHGYSLKAGYE-CQIYFMTALVDMYAKCGSLVDARKGFDYLKEP 379

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DI+ W S+ISG   +G  E AL  +  M+     P E T++ V+ AC+ L  L++GKQ+ 
Sbjct: 380 DIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIH 439

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           A ++K GF     + SA   +++KC  LED   +F ++   D    N MIS   + G G 
Sbjct: 440 AQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGL 499

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS-GFDSNAVVASSL 387
            ALELF+ +     +P   T   VLS+   +  VE G  +  M +   G        + +
Sbjct: 500 KALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACM 559

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRD--LVSWNTIMMGLTQNGRAAETLDVF--EELLEEG 442
           +++ ++ G +  + E F++    D  +  W  I++G  +N R  E L  +  E+L+E G
Sbjct: 560 VDILSRAGKLHETKE-FIESATIDHGMCLWR-ILLGACRNYRNYE-LGAYAGEKLMELG 615



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 139/299 (46%), Gaps = 36/299 (12%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           NK S      +I+ C    + +  K IHG+  K G+    Y     +D+Y++ G+  D  
Sbjct: 311 NKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDAR 370

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           + FD + + + + W                                SMISGYA  G ++ 
Sbjct: 371 KGFDYLKEPDIVLW-------------------------------TSMISGYAQNGENET 399

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL ++ +MQ++ + P   T + +L   SS      GKQIH   I+ G SL  V +G++L 
Sbjct: 400 ALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSL-EVPIGSALS 458

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            MY K G L     VF  M   DI++WN++ISG   +G G  AL+ F  +R+    PD  
Sbjct: 459 TMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYV 518

Query: 248 TISIVINACTKLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           T   V++AC+ +  +++GK  F + + + G +      +  +D+ S+  +L ++    E
Sbjct: 519 TFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIE 577



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           ++ G   H+  +++G  S+  + +SL+ +YAK GSI  +  +F  +  +D+VSWN ++ G
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 422 LTQNGRAAET--LDVFEELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMK 474
            +Q G    +  +++F+ +  E   P+  T + V  A +     +GG     + + ++  
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTS-- 143

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
             Y V  G    + +I++ C+ G +  A  +  T+P +   S W +I+   A+
Sbjct: 144 NFYDVFVG----SSLINMYCKIGCMLDARKVFDTIPERNTVS-WATIISGYAM 191



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 89/175 (50%), Gaps = 11/175 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +  K IH    K GF+    +G+    +Y++ G+ +D   +F  +P 
Sbjct: 420 ASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPS 479

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ ++WN  + GL ++     AL++F+E+     +PD V++ +++S  +  G  +   ++
Sbjct: 480 RDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERG-KV 538

Query: 135 FSKMQLQ--GVRPSGFTFSILLSTVSSA--CHGKQ--IHGSMIRSGLSLSNVVLG 183
           + +M L   G+ P    ++ ++  +S A   H  +  I  + I  G+ L  ++LG
Sbjct: 539 YFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLG 593


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/608 (30%), Positives = 327/608 (53%), Gaps = 36/608 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C + K+    + IH  + K G+  + ++G   +D+YS+ G + D          
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID---------- 367

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A+ VF  I +PD+V W+++I+     G S+ ++++F  M
Sbjct: 368 ---------------------AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L    P+ +T   LLS  ++     +G+ IH  + + G   ++V + N+L+ MY K G 
Sbjct: 407 RLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE-TDVAVSNALVTMYMKNGC 465

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           ++    ++ +M + D+ISWN+ +SG  + G  +  L  FY M   G+ P+ YT   ++ +
Sbjct: 466 VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ L ++  G+QV A  +K     N+ V +A ID+++KC  LED+   F +L   D    
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTW 585

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMAIK 374
            V+I+ Y +   GE AL  F+ M +E ++P EFTL+ C+     +  +E G Q HSM  K
Sbjct: 586 TVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK 645

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG  S+  V S+L++MYAK G ++ +  +F  L +RD ++WNTI+ G  QNG+  + L  
Sbjct: 646 SGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTA 705

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +L+EG+ PD +T   +L AC++ G V++G   F++M  ++G+ P  +H AC++D+L 
Sbjct: 706 FRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILG 765

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G+  +  D    M       IWE++L AS ++ ++ L E  A ++ +LQ      Y L
Sbjct: 766 RVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYIL 825

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A  GRW+ + RV+ +M   G+ K  GCSW+    +++TF + +  H   Q+I+L 
Sbjct: 826 LSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLK 885

Query: 615 LRLLTWEM 622
           L  L  E+
Sbjct: 886 LDELDREL 893



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 228/452 (50%), Gaps = 36/452 (7%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           +K  L Y S ++  C S +S   AK IHG + K   N  ++L    +++Y++   S    
Sbjct: 108 SKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYAR 167

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +  ++P ++ +SW   ++GL+                                 G+++ 
Sbjct: 168 LVLAKMPDRDVVSWTALIQGLVAE-------------------------------GFAND 196

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
           ++ +F +MQ +G+ P+ FT +  L   S       GKQ+H    + GL L ++ +G++L+
Sbjct: 197 SIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGL-LLDLFVGSALV 255

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D+Y K G +  A  +F+ M E + ++WN L++G    G     L  F SM       +E+
Sbjct: 256 DLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEF 315

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T++ V+  C   +NL +G+ + +L +K G+  N  +    +D++SKC    D++ +F+ +
Sbjct: 316 TLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
            + D  V + +I+   + G  E +++LF LM   D  P ++T+  +LS+      +++G 
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H+   K GF+++  V+++L+ MY K G +   T+++  +  RDL+SWN  + GL   G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                L +F  +LEEG  P+  T  ++L +C+
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 210/433 (48%), Gaps = 36/433 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D  K +H   FKLG     ++G+  +DLY++ G                         
Sbjct: 228 ALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG------------------------- 262

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  ++ A K+F  +PE + V+WN +++GYA  G     L++F  M    V+ + FT
Sbjct: 263 ------EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFT 316

Query: 150 FSILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + +L   +++ + KQ   IH  +I+ G    N  +G  L+DMY K G+   A GVF  +
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYE-GNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           ++ DI+ W++LI+     G  E ++  F+ MR     P++YTI  +++A T   NL  G+
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            + A   K GF ++  V +A + ++ K   + D  +L+E +   D    N  +S     G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             +  L +F  ML E   P  +T   +L S   +  V +G Q H+  IK+  D N  V +
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCT 555

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L++MYAK   ++ +   F +L  RDL +W  I+    Q  +  + L+ F ++ +EG+ P
Sbjct: 556 ALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKP 615

Query: 446 DRITLAAVLLACN 458
           +  TLA  L  C+
Sbjct: 616 NEFTLAGCLSGCS 628



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 165/312 (52%), Gaps = 2/312 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            K IHG +++  ++  +  L  SL+++Y K     YA  V   M + D++SW +LI G  
Sbjct: 131 AKAIHGLIVKDVIN-PDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLV 189

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G+   ++  F  M+  G  P+E+T++  + AC+    LD GKQ+ A + K+G L +  
Sbjct: 190 AEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF 249

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V SA +DL++KC  +E + ++F  +   +    NV+++ Y + G     L+LF  M+  D
Sbjct: 250 VGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELD 309

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++  EFTL+ VL        ++ G   HS+ IK G++ N  +   L++MY+K G    + 
Sbjct: 310 VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  + K D+V W+ ++  L Q G++ E++ +F  +      P++ T+ ++L A    G
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTG 429

Query: 462 FVDKGMLVFSAM 473
            +  G  + + +
Sbjct: 430 NLQYGQSIHACV 441



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 37/187 (19%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N+ +L+ C   +  C S  S +  + +H  +FK G  +  ++G+  +D+Y++ G  ++  
Sbjct: 616 NEFTLAGC---LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            LF+ + +++ I+WN                               ++I GYA  G  + 
Sbjct: 673 ALFEALIRRDTIAWN-------------------------------TIICGYAQNGQGNK 701

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL  F  M  +G+ P G TF+ +LS  S       GK+   SM R       V     ++
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 188 DMYGKLG 194
           D+ G++G
Sbjct: 762 DILGRVG 768


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/612 (29%), Positives = 329/612 (53%), Gaps = 36/612 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   +S +  + +H  + K G   + YL N  L +Y++ G+  D            
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTD------------ 149

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A +VFD I + ++VSW +MI  + +   +  A + +  M+L
Sbjct: 150 -------------------ARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190

Query: 141 QGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G +P   TF  LL+  ++      G+++H  + ++GL L   V G SL+ MY K G + 
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV-GTSLVGMYAKCGDIS 249

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  + E ++++W  LI+G    G  ++AL+    M+ +  +P++ T + ++  CT
Sbjct: 250 KAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L+ GK+V    ++ G+     V++A I ++ KC  L+++ +LF  L   D      
Sbjct: 310 TPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTA 369

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSG 376
           M++ Y + GF + A++LF+ M ++ I+P + T +  L+S   P  ++ G   H   + +G
Sbjct: 370 MVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAG 429

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           +  +  + S+L+ MYAK GS+D +  +F ++ +R++V+W  ++ G  Q+GR  E L+ FE
Sbjct: 430 YSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE 489

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++ ++G+ PD++T  +VL AC + G V++G   F +M  +YG+ P  EHY+C +DLL +A
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRA 549

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L +A ++  TMPFQPG S+W ++L A  I+ DV+  E  AE ++ L       Y  L+
Sbjct: 550 GHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALS 609

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  GR+E   +V++VM K  + K  G SWI +  +++ F+  +  H   ++IY  L 
Sbjct: 610 NIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELG 669

Query: 617 LLTWEMEDEGCV 628
            LT +++++G V
Sbjct: 670 KLTEQIKEQGYV 681



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 207/463 (44%), Gaps = 89/463 (19%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V    ++Y S ++  C +  + +  K +H ++ + G+    ++ N  + +Y + G
Sbjct: 289 MQQAEVAPNKITYTS-ILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCG 347

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              +  +LF ++P ++ ++                               W +M++GYA 
Sbjct: 348 GLKEARKLFGDLPHRDVVT-------------------------------WTAMVTGYAQ 376

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G+ D A+++F +MQ QG++P   TF+  L++ SS      GK IH  ++ +G SL +V 
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL-DVY 435

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L ++L+ MY K G +  A  VF  M E ++++W ++I+GC   G    AL+ F  M+  G
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG 495

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
             PD+ T + V++ACT +  +++G++ F ++ +  G        S  +DL  +   LE++
Sbjct: 496 IKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEA 555

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI- 359
                          NV+++                       +P       +LS+  I 
Sbjct: 556 E--------------NVILTM--------------------PFQPGPSVWGALLSACRIH 581

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV-----S 414
             VE G +     +K   D +     +L  +YA  G  + + ++   ++KRD+V     S
Sbjct: 582 SDVERGERAAENVLKLDPDDDGAYV-ALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQS 640

Query: 415 W----NTIMMGLTQNGRAAETLDVF-------EELLEEGLPPD 446
           W      + +   ++    E  +++       E++ E+G  PD
Sbjct: 641 WIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPD 683


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/615 (31%), Positives = 332/615 (53%), Gaps = 40/615 (6%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           TYL N  L  Y + G      ++FD +P  N  ++N  L  L  +  L     +F  + +
Sbjct: 41  TYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQ 100

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQG---VRPSGFTFSILL---STVSSACHG 163
            D+VS+N++I+G++  G    A+ ++  + LQ    VRPS  T S ++   S +     G
Sbjct: 101 RDIVSYNAVIAGFSGGGSHAQAVRVYLAL-LQADSSVRPSRITMSTMVMAASALGDRALG 159

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-----------------VLY--------- 197
           KQ H  ++R G   +N  +G+ L+DMY K+                  V+Y         
Sbjct: 160 KQFHCQILRLGFG-ANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLR 218

Query: 198 -----YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
                 A  +F  M + D I+W ++++G   +G    AL+ F  MR+ G + D+YT   +
Sbjct: 219 CKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC  L  L++GKQ+ A  ++  +  N  V SA +D++SKC  ++ +  +F ++   + 
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
                +I  YG+ G  E A+ +F  M R+ I P ++TL  V+SS   +  +E G+QFH +
Sbjct: 339 ISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCL 398

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+ SG      V+++L+ +Y K GSI+ +  +F ++   D VSW  ++ G  Q GRA ET
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           +D+FE++L +G+ PD +T   VL AC+  GFV+KG   F +M++++G++P ++HY C+ID
Sbjct: 459 IDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           L  ++G+L +A +    MP  P    W ++L A  + GD+++ +  AE ++++   +P  
Sbjct: 519 LYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPAS 578

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL   +A +G+W  + ++++ MR   + K  GCSWI  KN+++ F+A +  H   + I
Sbjct: 579 YVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGI 638

Query: 612 YLVLRLLTWEMEDEG 626
           Y  L  L  +M +EG
Sbjct: 639 YEKLEWLNSKMLEEG 653



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 220/407 (54%), Gaps = 14/407 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L DR L        K  H  + +LGF A+ ++G+  +D+Y++     D  + FDE+  
Sbjct: 151 SALGDRAL-------GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDS 203

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + +N  + GLL+   ++ A ++F+ + + D ++W +M++G+   G    ALE+F +M
Sbjct: 204 KNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM 263

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + QG+    +TF  +L+    +S+   GKQIH  +IR+     NV +G++L+DMY K   
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYD-DNVFVGSALVDMYSKCRS 322

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M   +IISW +LI G   +G  E A+  F  M+  G  PD+YT+  VI++
Sbjct: 323 IKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISS 382

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L++G Q   L++  G +    V +A + L+ KC  +ED+ RLF+++   D    
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 442

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
             ++S Y ++G  +  ++LF+ ML + ++P   T   VLS+      VE G S FHSM  
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIM 419
             G        + ++++Y+++G +  + E   ++    D + W T++
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 204/436 (46%), Gaps = 46/436 (10%)

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           P  +  + LL+    A  G+      +   +   N+   N+L+       +L     +F 
Sbjct: 39  PPTYLLNHLLTAYGKA--GRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFA 96

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISIVINACTKLRNL 262
           +M + DI+S+N++I+G    G    A+  + ++  +  S  P   T+S ++ A + L + 
Sbjct: 97  SMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDR 156

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSK----------------------------- 293
             GKQ     +++GF +N+ V S  +D+++K                             
Sbjct: 157 ALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGL 216

Query: 294 --CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
             C  +E++ RLFE +   D      M++ + + G    ALE+F+ M  + I   ++T  
Sbjct: 217 LRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFG 276

Query: 352 CVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            +L++   +  +E G Q H+  I++ +D N  V S+L++MY+K  SI  +  +F ++  +
Sbjct: 277 SILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCK 336

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           +++SW  +++G  QNG + E + VF E+  +G+ PD  TL +V+ +C     +++G   F
Sbjct: 337 NIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-F 395

Query: 471 SAMKEEYGVMPGEEHYACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
             +    G+M    HY  +    + L  + G +  A  +   M F    S W +++   A
Sbjct: 396 HCLALVSGLM----HYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVSGYA 450

Query: 527 IYGDVKLTENVAERMM 542
            +G  K T ++ E+M+
Sbjct: 451 QFGRAKETIDLFEKML 466


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 327/614 (53%), Gaps = 38/614 (6%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           T+L N  L  Y + G      ++FD  P  N  ++N  L  L  +  LD    +F  + +
Sbjct: 41  THLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQ 100

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQG--VRPSGFTFSILL---STVSSACHGK 164
            D VS+N++I+G++  G    A+ ++  +   G  VRPS  T S ++   S +     G+
Sbjct: 101 RDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGR 160

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME----------------- 207
           Q H  ++R G  + N  +G+ L+ MY K+G++  A  VF  M+                 
Sbjct: 161 QFHCQILRLGFGV-NAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRC 219

Query: 208 --------------ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
                         + D I+W ++++G   +G    AL+ F  MR+ G + D+YT   ++
Sbjct: 220 KMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSIL 279

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  L  L++GKQ+ A  ++  +  N  V SA +D++SKC  ++ +   F ++   +  
Sbjct: 280 TACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNII 339

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
               +I  YG+ G  E A+ +F  M R+ I P +FTL  V+SS   +  +E G+QFH +A
Sbjct: 340 SWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLA 399

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           + SG      V+++L+ +Y K GSI+ +  +F ++   D VSW  ++ G  Q GRA ET+
Sbjct: 400 LVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETI 459

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           D+FE++L + + PD +T   VL AC+  GFV+KG   F +M++++G++P ++HY C+IDL
Sbjct: 460 DLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDL 519

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
             ++G+L +A +    MP  P    W ++L A  + GD+++ +  AE ++++   +P  Y
Sbjct: 520 YSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASY 579

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL   +A +G W  + ++++ MR   + K  GCSWI  KN+++ F+A +  H   + IY
Sbjct: 580 VLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIY 639

Query: 613 LVLRLLTWEMEDEG 626
             L  L  +M +EG
Sbjct: 640 EKLEWLNSKMLEEG 653



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 223/428 (52%), Gaps = 14/428 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L DR L        +  H  + +LGF  + ++G+  + +Y++ G   D  ++FDE+  
Sbjct: 151 SALGDRAL-------GRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDG 203

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + +N  + GLL+   ++ A ++F+ + + D ++W +M++G+   G    AL  F +M
Sbjct: 204 KNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM 263

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + QG+    +TF  +L+    +S+   GKQIH  +IR+     NV +G++L+DMY K   
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYD-DNVFVGSALVDMYSKCRS 322

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  M   +IISW +LI G   +G  E A+  F  M+  G  PD++T+  VI++
Sbjct: 323 IKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISS 382

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L++G Q   L++  G +    V +A + L+ KC  +ED+ RLF+++   D    
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSW 442

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
             +++ Y ++G  +  ++LF+ ML +D++P   T   VLS+      VE G S FHSM  
Sbjct: 443 TALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNGRAAETL 432
             G        + ++++Y+++G +  + E   ++    D + W T++      G      
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQ 562

Query: 433 DVFEELLE 440
              E LLE
Sbjct: 563 WAAENLLE 570


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/619 (32%), Positives = 323/619 (52%), Gaps = 43/619 (6%)

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F   T+L N  L  Y+R G+  D  ++FD +P +N  S+N  L    +    D AL +F 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACH 162
            IP+PD  S+N++++  A  G    AL   + M       + ++F+  LS  +S   +  
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H  + +S    S+V +G +L+DMY K      A  VF  M E +I+SWNSLI+   
Sbjct: 166 GEQVHALVTKSSHG-SDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYE 224

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G  + AL  F  M   G+ PDE T++ V++AC  L    +G+QV    VK       +
Sbjct: 225 QNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDM 284

Query: 283 VLS-ATIDLFSKCNR-------------------------------LEDSVRLFEQLDRW 310
           VL+ A +D+++KC R                               + D+  +F Q+   
Sbjct: 285 VLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEK 344

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           +    NV+I+TY      E AL LF  + RE + PT +T   VL++   +  ++ G Q H
Sbjct: 345 NVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAH 404

Query: 370 SMAIKSGF------DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
              +K GF      +S+  V +SL++MY KTGSI    ++F ++  RD VSWN +++G  
Sbjct: 405 VHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYA 464

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           QNGRA + L +FE +L     PD +T+  VL AC + G V +G   F +M E++G++P  
Sbjct: 465 QNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTR 524

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           +HY C+IDLL +AG L +  ++   MP +P   +W S+L A  ++ ++ + E  A ++ +
Sbjct: 525 DHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFE 584

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L   +  PY LL+  YA  G+W  + RV++ M+  G++K  GCSWI I  ++  F A + 
Sbjct: 585 LDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDN 644

Query: 604 QHHGGQKIYLVLRLLTWEM 622
            H    +I+  LR++  +M
Sbjct: 645 IHPCRNEIHDTLRIIQMQM 663


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 197/613 (32%), Positives = 325/613 (53%), Gaps = 41/613 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHL-FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           ++L+ +C+       AK +  H+   L     T+L NR L LY++ G   D   LFD++ 
Sbjct: 26  TRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMS 85

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +++  SWN  L    KS N++    VFD++   D VS+N++I+G++  G S  ALE F +
Sbjct: 86  RRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVR 145

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           MQ +G   + +T   +L   S       GKQIHG ++ + L  S V + N+L +MY K G
Sbjct: 146 MQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGES-VFVWNALTNMYAKCG 204

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A  +F  M   +++SWNS+ISG   +G  E     F  M+ SG  PD+ TIS +++
Sbjct: 205 ALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILS 264

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A                                   + +C  ++++ + F ++   D   
Sbjct: 265 A-----------------------------------YFQCGYIDEACKTFREIKEKDKVC 289

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
              M+    + G  E AL LF+ ML E++RP  FT+S V+SS   +  +  G   H  A+
Sbjct: 290 WTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAV 349

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
             G D + +V+S+L++MY+K G    +  +F ++  R+++SWN++++G  QNG+  E L 
Sbjct: 350 IFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALA 409

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           ++EE+L E L PD IT   VL AC + G V++G   F ++ + +G+ P  +HY+C+I+LL
Sbjct: 410 LYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLL 469

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG + KA+D+  +M F+P C IW ++L    I  DV   E  A  + +L   +  PY 
Sbjct: 470 GRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYI 529

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           +L+  YA  GRW+ +  V+ +M+ N I K    SWI I N+++ F A +  H   ++IY 
Sbjct: 530 MLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYE 589

Query: 614 VLRLLTWEMEDEG 626
            L  L  ++++ G
Sbjct: 590 ELNRLIKKLQESG 602


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 203/620 (32%), Positives = 334/620 (53%), Gaps = 21/620 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   ++ +  K +H H+F+   +    L N  LD+Y + G+  D  ++F EIP 
Sbjct: 109 SAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPC 168

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN  SWN  + G  K   +D A+K+FD++PEPD+VSWNS+I+G      S  AL   S M
Sbjct: 169 KNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVD-NASSRALRFVSMM 227

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++   FTF  +L     +     G++IH  +I+SG   S   + ++LIDMY    +
Sbjct: 228 HGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCI-SALIDMYSSCKL 286

Query: 196 LYYAFGVFLNMEELDIIS-----WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           L  A  +F        +S     WNS++SG   +G    AL     M  SG   D YT S
Sbjct: 287 LSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFS 346

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           IV+  C    NL    QV    +  G+  + +V S  ID+++K   + +++RLFE+L   
Sbjct: 347 IVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDK 406

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D    + +I+   R+G  ++A  LF  M+   ++   F +S VL +   +   +HG Q H
Sbjct: 407 DVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVH 466

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           S+ +K G++S  VV ++L++MYAK G I+ +  +F  L + D +SW +I++G  QNGRA 
Sbjct: 467 SLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAE 526

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E + +  +++E G  P++IT+  VL AC + G V++   VF++++  +G++P  EHY C+
Sbjct: 527 EAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCM 586

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +D+L QAG+  +A+ + S MPF+P  +IW S+L A   Y +  L   VAE ++       
Sbjct: 587 VDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDV 646

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH---- 605
             Y +L+  YA  G W+++ +V++ ++K G  K  G  +  I  + Y      L H    
Sbjct: 647 SVYIMLSNVYAALGMWDSVSKVRETVKKIG-KKRAGKIFYEIPFKFYFMEHLHLGHAKQG 705

Query: 606 -HGG--QKIYLVLR--LLTW 620
            +GG  + IY +L   L++W
Sbjct: 706 LNGGVVKVIYPILEPDLVSW 725



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 257/564 (45%), Gaps = 84/564 (14%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+ F+S   AK++H H+ K GF  H ++ N  + +YS+  +  D                
Sbjct: 13  CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIID---------------- 56

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV- 143
                          A  +FDE+P  ++VSW +M+S   +      AL ++++M    + 
Sbjct: 57  ---------------ARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIE 101

Query: 144 RPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +P+ F +S +L     V +   GK +H  + ++ L + ++VL N+L+DMY K G L  A 
Sbjct: 102 QPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDV-DIVLMNALLDMYVKCGSLRDAQ 160

Query: 201 GVFL-------------------------------NMEELDIISWNSLISGCFNSGYGEL 229
            VF                                 M E DI+SWNS+I+G  ++     
Sbjct: 161 RVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSR- 219

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL     M   G   DE+T   V+ AC     L  G+++    +K GF S+   +SA ID
Sbjct: 220 ALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALID 279

Query: 290 LFSKCNRLEDSVRLFEQLDR-----WDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           ++S C  L ++ ++F+Q  R        A+ N M+S +   G    AL +   M R  +R
Sbjct: 280 MYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVR 339

Query: 345 PTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
              +T S VL   +    +   SQ H   I SG++ + VV S L+++YAK GSI+++  +
Sbjct: 340 FDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRL 399

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F +L  +D+V+W++++ G  + G       +F +++  GL  D   ++ VL AC+     
Sbjct: 400 FERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASH 459

Query: 464 DKGMLVFS-AMKEEY---GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
             G  V S  +K+ Y   GV+        +ID+  + G +  A+ +   +      S W 
Sbjct: 460 QHGKQVHSLCLKKGYESEGVVT-----TALIDMYAKCGDIEDALSLFGCLSEIDTMS-WT 513

Query: 520 SILRASAIYGDVKLTENVAERMMD 543
           SI+   A  G  +   ++  +M++
Sbjct: 514 SIIVGCAQNGRAEEAISLLHKMIE 537



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 196/435 (45%), Gaps = 63/435 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C++F +   A  +HG +   G+     +G+  +D+Y++ G+             
Sbjct: 346 SIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGS------------- 392

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             ++ AL++F+ +P+ DVV+W+S+I+G A  G    A  +F  M
Sbjct: 393 ------------------INNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDM 434

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++   F  SI+L   S+++S  HGKQ+H   ++ G   S  V+  +LIDMY K G 
Sbjct: 435 IHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYE-SEGVVTTALIDMYAKCGD 493

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F  + E+D +SW S+I GC  +G  E A+   + M  SG  P++ TI  V+ A
Sbjct: 494 IEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTA 553

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C     +++   VF ++    G +      +  +D+  +  R E++V+L  ++  + D  
Sbjct: 554 CRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKT 613

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI---------------- 357
           + + ++   G Y   ++A  + + +L     P + ++  +LS++                
Sbjct: 614 IWSSLLGACGTYKNRDLANIVAEHLLATS--PEDVSVYIMLSNVYAALGMWDSVSKVRET 671

Query: 358 --PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              I     G  F+ +  K  F         L   +AK G      ++   + + DLVSW
Sbjct: 672 VKKIGKKRAGKIFYEIPFKFYF------MEHLHLGHAKQGLNGGVVKVIYPILEPDLVSW 725

Query: 416 NTIMMGLTQNGRAAE 430
           N ++ GL  N    E
Sbjct: 726 NNVIAGLADNASPYE 740



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 197/442 (44%), Gaps = 53/442 (11%)

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            F + I   ++ +A   K +H  +I+SG   +++ + N++I +Y K   +  A  +F  M
Sbjct: 9   AFRYCIRFRSIKNA---KSLHSHIIKSGFC-NHIFILNNMISVYSKCSSIIDARNMFDEM 64

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKG 265
              +I+SW +++S   NS     AL  +  M  S    P+++  S V+ AC  +RN++ G
Sbjct: 65  PHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELG 124

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           K V     +     + ++++A +D++ KC  L D+ R+F ++   +    N +I  Y + 
Sbjct: 125 KMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQ 184

Query: 326 GFGEVALELFQLMLREDI------------------------------RPTEFTLSCVLS 355
           G  + A++LF  M   DI                              +  EFT   VL 
Sbjct: 185 GLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLK 244

Query: 356 SIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +      +  G + H   IKSGF+S+    S+L++MY+    +  +T+IF +  +   VS
Sbjct: 245 ACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVS 304

Query: 415 -----WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
                WN+++ G   NG   E L +   +   G+  D  T + VL  C     ++   L 
Sbjct: 305 ESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKIC-----MNFDNLS 359

Query: 470 FSAMKEEYGVMPGEEHYACI-----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
            ++    + +  G E   C+     ID+  + G +  A+ +   +P +   + W S++  
Sbjct: 360 LASQVHGFVITSGYE-LDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVA-WSSLITG 417

Query: 525 SAIYGDVKLTENVAERMMDLQL 546
            A +G  KL  ++   M+ L L
Sbjct: 418 CARFGSDKLAFSLFMDMIHLGL 439



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 110/220 (50%), Gaps = 11/220 (5%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           I I    C + R++   K + +  +K GF ++  +L+  I ++SKC+ + D+  +F+++ 
Sbjct: 6   IQIAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMP 65

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSIP-IPPVEHGS 366
             +      M+S          AL L+  M+   I +P +F  S VL +   +  VE G 
Sbjct: 66  HRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGK 125

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H    ++  D + V+ ++L++MY K GS+  +  +F ++  ++  SWNT+++G  + G
Sbjct: 126 MVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQG 185

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
              + + +F+++ E    PD ++  +++      G VD  
Sbjct: 186 LIDDAMKLFDKMPE----PDIVSWNSII-----AGLVDNA 216



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +++    HS  IKSGF ++  + ++++ +Y+K  SI  +  +F ++  R++VSW T++  
Sbjct: 19  IKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSV 78

Query: 422 LTQNGRAAETLDVFEELLEEGLP-PDRITLAAVLLACNYGGFVDKGMLV----FSAMKEE 476
           LT +    E L ++ E++E  +  P++   +AVL AC     V+ G +V    F A  + 
Sbjct: 79  LTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDV 138

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
             V+        ++D+  + G L  A  +   +P +   S W +++   A  G +    +
Sbjct: 139 DIVLMNA-----LLDMYVKCGSLRDAQRVFCEIPCKNATS-WNTLILGYAKQGLI----D 188

Query: 537 VAERMMDLQLPSP 549
            A ++ D ++P P
Sbjct: 189 DAMKLFD-KMPEP 200


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/542 (35%), Positives = 307/542 (56%), Gaps = 11/542 (2%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L KS  L  A  VFD +   D VSWNSMI+G+   G    A E F+ MQL G +P+  TF
Sbjct: 248 LSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATF 307

Query: 151 SILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + ++ + +S       + +H   ++SGLS +  VL  +L+    K   +  AF +F  M 
Sbjct: 308 ASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL-TALMVALTKCKEIDDAFSLFSLMH 366

Query: 208 ELD-IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +  ++SW ++ISG   +G  + A++ F  MR  G  P+ +T S ++     +++     
Sbjct: 367 GVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT----VQHAVFIS 422

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++ A  +K  +  +S V +A +D F K   + D+V++FE ++  D    + M++ Y + G
Sbjct: 423 EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAG 482

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLS--SIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
             E A ++F  + RE I+P EFT   +++  + P   VE G QFH+ AIK   ++   V+
Sbjct: 483 ETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVS 542

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           SSL+ +YAK G+I+S+ EIF +  +RDLVSWN+++ G  Q+G+A + L+VFEE+ +  L 
Sbjct: 543 SSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLE 602

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D IT   V+ AC + G V KG   F+ M  ++ + P  EHY+C+IDL  +AG LGKA+D
Sbjct: 603 VDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMD 662

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           I + MPF P  ++W  +L AS ++ +++L +  AE+++ L+      Y LL+  YA  G 
Sbjct: 663 IINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGN 722

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           W   V V+K+M K  + K  G SWI +KN+ Y+F AG+L H     IY  L  L   + D
Sbjct: 723 WHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRD 782

Query: 625 EG 626
            G
Sbjct: 783 VG 784



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 252/524 (48%), Gaps = 56/524 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    K G   H  +GN  +D+Y++ G   D  ++FDE+  ++ +S           
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVS----------- 170

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                               WNS+++GY+   ++D   E+F  MQ++G RP  +T S ++
Sbjct: 171 --------------------WNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVI 210

Query: 155 STVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           + ++   +   G QIH  +++ G     +V  NSLI M  K G+L  A  VF NME  D 
Sbjct: 211 AALANQGAVAIGMQIHALVVKLGFETERLVC-NSLISMLSKSGMLRDARVVFDNMENKDS 269

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWNS+I+G   +G    A + F +M+ +G  P   T + VI +C  L+ L   + +   
Sbjct: 270 VSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCK 329

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEV 330
           ++K G  +N  VL+A +   +KC  ++D+  LF  +      V    MIS Y + G  + 
Sbjct: 330 TLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQ 389

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG---SQFHSMAIKSGFDSNAVVASSL 387
           A+ LF LM RE ++P  FT S +L+      V+H    S+ H+  IK+ ++ ++ V ++L
Sbjct: 390 AVNLFSLMRREGVKPNHFTYSTILT------VQHAVFISEIHAEVIKTNYEKSSSVGTAL 443

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++ + K G+I  + ++F  ++ +D+++W+ ++ G  Q G   E   +F +L  EG+ P+ 
Sbjct: 444 LDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNE 503

Query: 448 ITLAAVLLACNY-GGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQAGQLGKA 502
            T  +++ AC      V++G    +     Y +     +  C+    + L  + G +  A
Sbjct: 504 FTFCSIINACTAPTASVEQGKQFHA-----YAIKLRLNNALCVSSSLVTLYAKRGNIESA 558

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            +I      +   S W S++   A +G  K    V E M    L
Sbjct: 559 HEIFKRQKERDLVS-WNSMISGYAQHGQAKKALEVFEEMQKRNL 601



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 189/371 (50%), Gaps = 6/371 (1%)

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           R LL+  +   A ++FD+ P  D+   N ++  Y+ C  +  AL +F  +   G+ P  +
Sbjct: 44  RTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSY 103

Query: 149 TFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           T S +LS  + + +G   +Q+H   ++ GL + ++ +GNSL+DMY K G +     VF  
Sbjct: 104 TMSCVLSVCAGSFNGTVGEQVHCQCVKCGL-VHHLSVGNSLVDMYTKTGNVRDGRRVFDE 162

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M + D++SWNSL++G   + + +   + F  M+  GY PD YT+S VI A      +  G
Sbjct: 163 MGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIG 222

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ AL VK+GF +  +V ++ I + SK   L D+  +F+ ++  D    N MI+ +   
Sbjct: 223 MQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVIN 282

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G    A E F  M     +PT  T + V+ S   +  +      H   +KSG  +N  V 
Sbjct: 283 GQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL 342

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           ++LM    K   ID +  +F  +   + +VSW  ++ G  QNG   + +++F  +  EG+
Sbjct: 343 TALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV 402

Query: 444 PPDRITLAAVL 454
            P+  T + +L
Sbjct: 403 KPNHFTYSTIL 413



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 1/229 (0%)

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL  F S+  SG SPD YT+S V++ C    N   G+QV    VK G + +  V ++ +D
Sbjct: 86  ALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVD 145

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           +++K   + D  R+F+++   D    N +++ Y    F +   ELF LM  E  RP  +T
Sbjct: 146 MYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYT 205

Query: 350 LSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           +S V++++     V  G Q H++ +K GF++  +V +SL+ M +K+G +  +  +F  ++
Sbjct: 206 VSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNME 265

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            +D VSWN+++ G   NG+  E  + F  +   G  P   T A+V+ +C
Sbjct: 266 NKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC 314



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 129/278 (46%), Gaps = 39/278 (14%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWN 85
           L+ +   F   IH  + K  +   + +G   LD + + G   D +++F+ I  K+ I+W+
Sbjct: 413 LTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWS 472

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
             L                               +GYA  G ++ A ++F ++  +G++P
Sbjct: 473 AML-------------------------------AGYAQAGETEEAAKIFHQLTREGIKP 501

Query: 146 SGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVV-LGNSLIDMYGKLGVLYYAF 200
           + FTF  +++      +S   GKQ H   I+  L L+N + + +SL+ +Y K G +  A 
Sbjct: 502 NEFTFCSIINACTAPTASVEQGKQFHAYAIK--LRLNNALCVSSSLVTLYAKRGNIESAH 559

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F   +E D++SWNS+ISG    G  + AL+ F  M+      D  T   VI+AC    
Sbjct: 560 EIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAG 619

Query: 261 NLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRL 297
            + KG+  F + +    ++ ++   S  IDL+S+   L
Sbjct: 620 LVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGML 657



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLS-FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           L +  +     ++CS +I+ C +   S +  K  H +  KL  N    + +  + LY++ 
Sbjct: 494 LTREGIKPNEFTFCS-IINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKR 552

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMI 119
           G  +   ++F    +++ +SWN  + G  +      AL+VF+E+     E D +++  +I
Sbjct: 553 GNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVI 612

Query: 120 SGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVSSA 160
           S  A  G        F+ M     + P+   +S ++   S A
Sbjct: 613 SACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRA 654


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 197/646 (30%), Positives = 339/646 (52%), Gaps = 36/646 (5%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +Y S  I +C+   +    K IHG++ +   +  T+L N  +  Y+   +S    ++FD 
Sbjct: 4   NYYSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDG 63

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           IPQ N  SWN  L    KS +L    + F+++P+ D V+WN +I GY+  G    A++ +
Sbjct: 64  IPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAY 123

Query: 136 SKMQLQ-GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + M        +  T   +L   SS  H   GKQIHG +I+ G   S +++G+ L+DMY 
Sbjct: 124 NTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFE-SYLLVGSPLLDMYS 182

Query: 192 KLGVLYYAFGVFLNME------------------------------ELDIISWNSLISGC 221
           K+G +  A  VF  ++                              E D +SW+++I G 
Sbjct: 183 KVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGL 242

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G  + A++ F  M+  G   D+Y    V+ AC  L  ++ G+Q+ A  ++     + 
Sbjct: 243 AQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHI 302

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V SA ID++ KC  L  +  +F+++ + +      M+  YG+ G    A+++F  M R 
Sbjct: 303 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRS 362

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I P  +TL   +S+   I  +E GSQFH  AI +G      V++SL+ +Y K G ID S
Sbjct: 363 GIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDS 422

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
           T +F +++ RD VSW  ++    Q GRA E + +F+++++ GL PD +TL  V+ AC+  
Sbjct: 423 TRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRA 482

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G V+KG   F  M  EYG++P   HY+C+IDL  ++G++ +A+   + MPF+P    W +
Sbjct: 483 GLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTT 542

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L A    G++++ +  AE +++L    P  Y+LL+  YA +G+W+ + ++++ M++  +
Sbjct: 543 LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNV 602

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            K  G SWI  K ++++F+A +       +IY  L  L  ++ D G
Sbjct: 603 RKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNG 648


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 183/523 (34%), Positives = 301/523 (57%), Gaps = 5/523 (0%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           ALKVF  I +PDVVSW+++I+     G S  A E+F +M+  GV P+ FT + L+S  + 
Sbjct: 384 ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 160 AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                +G+ IH  + + G    N V  N+L+ MY K+G +     VF      D+ISWN+
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVC-NALVTMYMKIGSVQDGCRVFEATTNRDLISWNA 502

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           L+SG  ++   +  L  F  M   G++P+ YT   ++ +C+ L ++D GKQV A  VK  
Sbjct: 503 LLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS 562

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              N  V +A +D+++K   LED+  +F +L + D     V+++ Y + G GE A++ F 
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFI 622

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M RE ++P EFTL+  LS    I  ++ G Q HSMAIK+G   +  VAS+L++MYAK G
Sbjct: 623 QMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCG 682

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            ++ +  +F  L  RD VSWNTI+ G +Q+G+  + L  FE +L+EG  PD +T   VL 
Sbjct: 683 CVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 742

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G +++G   F+++ + YG+ P  EHYAC++D+L +AG+  +       M      
Sbjct: 743 ACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 802

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            IWE++L A  ++G+++  E  A ++ +L+      Y LL+  +A +G W+ +  V+ +M
Sbjct: 803 LIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALM 862

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
              G+ K  GCSW+ +  +++ F + +  H   ++I+L L+ L
Sbjct: 863 STRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDL 905



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 157/602 (26%), Positives = 284/602 (47%), Gaps = 76/602 (12%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           +K  L   S ++  C S    +  K IHG + K G N  ++L N  +++Y++ G+++   
Sbjct: 124 SKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSAN--- 180

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                        A KVF EIPE DVVSW ++I+G+ + GY   
Sbjct: 181 ----------------------------YACKVFGEIPERDVVSWTALITGFVAEGYGSG 212

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
           A+ +F +M+ +GV  + FT++  L   S       GKQ+H   I+ G   S++ +G++L+
Sbjct: 213 AVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVG-DFSDLFVGSALV 271

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D+Y K G +  A  VFL M + + +SWN+L++G    G  E  L+ F  M  S  +  ++
Sbjct: 272 DLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKF 331

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T+S V+  C    NL  G+ V +L++++G   +  +    +D++SKC    D++++F ++
Sbjct: 332 TLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGS 366
           +  D    + +I+   + G    A E+F+ M    + P +FTL+ ++S +  +  + +G 
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGE 451

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H+   K GF+ +  V ++L+ MY K GS+     +F     RDL+SWN ++ G   N 
Sbjct: 452 SIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNE 511

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
                L +F ++L EG  P+  T  ++L +C+    VD G  V               H 
Sbjct: 512 TCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV---------------HA 556

Query: 487 ACIIDLLCQAGQLGKA-IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
             + + L     +G A +D+ +   F                   ++  E +  R++   
Sbjct: 557 QIVKNSLDGNDFVGTALVDMYAKNRF-------------------LEDAETIFNRLIKRD 597

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI--NKVTGCSWIGIKNRIYTFNAGEL 603
           L     ++++   YA  G+ E  V+    M++ G+  N+ T  S +   +RI T ++G  
Sbjct: 598 L---FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ 654

Query: 604 QH 605
            H
Sbjct: 655 LH 656



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 229/462 (49%), Gaps = 43/462 (9%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +L  CS  +D        +F K +H    K+G  +  ++G+  +DLY++ G         
Sbjct: 235 ALKACSMCLD-------LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCG--------- 278

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                  +  A +VF  +P+ + VSWN++++G+A  G ++  L 
Sbjct: 279 ----------------------EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLN 316

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F +M    +  S FT S +L   +++ +   G+ +H   IR G  L   +    L+DMY
Sbjct: 317 LFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFI-SCCLVDMY 375

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G+   A  VF+ +E+ D++SW+++I+     G    A + F  MR+SG  P+++T++
Sbjct: 376 SKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLA 435

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +++A T L +L  G+ + A   K GF  ++ V +A + ++ K   ++D  R+FE     
Sbjct: 436 SLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR 495

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFH 369
           D    N ++S +      +  L +F  ML E   P  +T   +L S   +  V+ G Q H
Sbjct: 496 DLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVH 555

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +  +K+  D N  V ++L++MYAK   ++ +  IF +L KRDL +W  I+ G  Q+G+  
Sbjct: 556 AQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE 615

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           + +  F ++  EG+ P+  TLA+ L  C+    +D G  + S
Sbjct: 616 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 657



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 212/437 (48%), Gaps = 50/437 (11%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + ++IH  + K GF     + N  + +Y + G+  D  ++F+    ++ ISWN  L G  
Sbjct: 449 YGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFH 508

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
            ++  DT L++F++                               M  +G  P+ +TF  
Sbjct: 509 DNETCDTGLRIFNQ-------------------------------MLAEGFNPNMYTFIS 537

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L + SS      GKQ+H  ++++ L   N  +G +L+DMY K   L  A  +F  + + 
Sbjct: 538 ILRSCSSLSDVDLGKQVHAQIVKNSLD-GNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 596

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+ +W  +++G    G GE A+  F  M+  G  P+E+T++  ++ C+++  LD G+Q+ 
Sbjct: 597 DLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH 656

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           ++++K G   +  V SA +D+++KC  +ED+  +F+ L   D    N +I  Y ++G G 
Sbjct: 657 SMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGG 716

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSL 387
            AL+ F+ ML E   P E T   VLS+   +  +E G + F+S++   G        + +
Sbjct: 717 KALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACM 776

Query: 388 MEMYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNG------RAAETLDVFEELL 439
           +++  + G      E F++  K   +++ W T++     +G      RAA  + +FE  L
Sbjct: 777 VDILGRAGKF-HEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAA--MKLFE--L 831

Query: 440 EEGLPPDRITLAAVLLA 456
           E  +  + I L+ +  A
Sbjct: 832 EPEIDSNYILLSNMFAA 848



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           +SLS CS++        + D  + +H    K G +   ++ +  +D+Y++ G  +D   +
Sbjct: 638 SSLSGCSRI-------ATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVV 690

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYS 128
           FD +  ++ +SWN  + G  +      ALK F    DE   PD V++  ++S  +  G  
Sbjct: 691 FDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 750

Query: 129 DYALEMFSKM-QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           +   + F+ + ++ G+ P+   ++ ++  +  A    ++  S I      SNV++  +++
Sbjct: 751 EEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE-SFIEEMKLTSNVLIWETVL 809

Query: 188 ---DMYGKL 193
               M+G +
Sbjct: 810 GACKMHGNI 818


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 205/625 (32%), Positives = 330/625 (52%), Gaps = 47/625 (7%)

Query: 42   FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL 101
             K  F A T+L N  +  Y+R G   D  ++FDEIP  N  S+N  L    +      A 
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 102  KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-- 159
             +F  IP+PD  S+N++I+  A       AL   + M       + ++F+  LS  ++  
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 160  -ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
             +  G Q+H +++       +V +G++L+DMY K      A  VF  M E +I+SWNSLI
Sbjct: 907  DSRTGVQVH-ALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLI 965

Query: 219  SGCF--NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
            + C+  N   GE AL  F SM  +G+ PDE T++ V++AC  L    +G+QV A  VK  
Sbjct: 966  T-CYEQNGPVGE-ALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSD 1023

Query: 277  FLSNSIVLS-ATIDLFSKCNR-------------------------------LEDSVRLF 304
                 +VLS A +D+++KC R                               +ED+  +F
Sbjct: 1024 RFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVF 1083

Query: 305  EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVE 363
             Q+   +    NV+I+ Y + G  E AL LF  + RE + PT +T   VL++   +  ++
Sbjct: 1084 SQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQ 1143

Query: 364  HGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             G Q H   +K GF      +S+  V +SL++MY KTGSID   ++F ++  RD VSWN 
Sbjct: 1144 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 1203

Query: 418  IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
            +++G  QNGRA + L +FE +L     PD +T+  VL AC + G V++G   F +M E++
Sbjct: 1204 MIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDH 1263

Query: 478  GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            G++P ++HY C+IDLL +AG L +  ++   M  +P   +W S+L +  ++ +V++ E  
Sbjct: 1264 GIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWA 1323

Query: 538  AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
            A ++ +L   +  PY LL+  YA  G+W  + RV+  M+  G++K  GCSWI I  ++  
Sbjct: 1324 AGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSV 1383

Query: 598  FNAGELQHHGGQKIYLVLRLLTWEM 622
            F A +  H    +I+ +LR++  +M
Sbjct: 1384 FLARDNGHPCKNEIHAILRIIQMQM 1408



 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 168/575 (29%), Positives = 278/575 (48%), Gaps = 78/575 (13%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C++ +D C        A+ +HGH+ K  F ++  LG   +D+Y              
Sbjct: 158 LSCCAECLDLC-------GARQLHGHIAKRDFQSNVILGTALVDVYG------------- 197

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                NC               L  A + FD+I EP+ +SWN ++  Y   G  D A++M
Sbjct: 198 -----NCFL-------------LADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDM 239

Query: 135 FSKMQLQGVRPSGFTFS--ILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M   GVRP G+T S  +L    ++A   G+ IH  ++R G    +V + +S++DMY 
Sbjct: 240 FFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYE-HHVHVRSSVVDMYA 298

Query: 192 KLGVLYYAFG-------------------------------VFLNMEELDIISWNSLISG 220
           K G +  A                                 VF  M+E +++SWN++++G
Sbjct: 299 KCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTG 358

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              S     AL  F  MR      D  T+  V++ACT + ++ KG++V A ++K GF S+
Sbjct: 359 YIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSS 418

Query: 281 SIVLSATIDLFSKCNRLEDSVRL--FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            I+ +A + ++SKC  L  + RL  FE     D    N +IS Y R+   E AL     M
Sbjct: 419 PILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM 478

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            + ++ P + T S  L++   I  ++ G Q H+  I+ G++ + ++ S L++MY K    
Sbjct: 479 -QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQF 537

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D S  IF     RD++ WN+++ G   +G+    LD+F+E+ ++G+  D +T    L++C
Sbjct: 538 DYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSC 597

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
              G V  G   F+ M +E  ++P  EHY C+I+LL + G + +  D    MPF+P  ++
Sbjct: 598 ISEGHVRLGRSYFTLMMDE-SIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAM 656

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           W  I      YG+ KL E  A+ + D    +P+ +
Sbjct: 657 WLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQF 691



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 234/483 (48%), Gaps = 41/483 (8%)

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           +N  +  L    ++  A ++FD +P  D  SWN++I+  +  G+   AL +FS M   G+
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 144 RPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           RP   T + +LS  +     C  +Q+HG + +     SNV+LG +L+D+YG   +L  A 
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQ-SNVILGTALVDVYGNCFLLADAR 206

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
             F ++ E + ISWN ++     +G G++A+D F+ M  +G  P  YT+S  + AC    
Sbjct: 207 RAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNN 266

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK--------------------------- 293
            L++G+ + A  ++ G+  +  V S+ +D+++K                           
Sbjct: 267 ALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVS 326

Query: 294 ----CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
               C R+ D+ R+FE +   +    N M++ Y R      AL LFQ M +E       T
Sbjct: 327 GLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAIT 386

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE--IFVK 406
           L  VLS+   I  +  G + H+ AIK GF S+ ++ ++L+ MY+K G + S+    +F  
Sbjct: 387 LGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEM 446

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
             +RD  SWN+++ G  ++  +   L    ++  E + P++ T ++ L AC     + +G
Sbjct: 447 GSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQG 505

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
           M + + M  + G    +   + +ID+ C+  Q   +I I    P +    +W S++   A
Sbjct: 506 MQIHAYMIRK-GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCA 563

Query: 527 IYG 529
             G
Sbjct: 564 YSG 566



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 150/296 (50%), Gaps = 5/296 (1%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L N  I+     G +  A  +F  M   D  SWN++I+    +G+   AL  F +M   G
Sbjct: 87  LFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLG 146

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             P + T++ V++ C +  +L   +Q+     K  F SN I+ +A +D++  C  L D+ 
Sbjct: 147 IRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADAR 206

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIP 360
           R F+ +   +    NV++  Y   G G++A+++F  ML   +RP  +T+S  VL+     
Sbjct: 207 RAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNN 266

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G   H+  ++ G++ +  V SS+++MYAK G++D++  +F     +D+V   +I+ 
Sbjct: 267 ALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVS 326

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           GL   GR A+   VFE + E  L      L   + + +  G     +L+F  M++E
Sbjct: 327 GLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTG----ALLLFQQMRQE 378


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 202/627 (32%), Positives = 331/627 (52%), Gaps = 46/627 (7%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           L  L   + TYL N  L  Y+  G      ++FD +P +N ++ N  L  L ++  +   
Sbjct: 37  LRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDM 96

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM--QLQGVRPSGFTFS---ILLS 155
            ++F  +P+ D VS+N++++G++  G    A   +  +     GVRPS  T S   ++ S
Sbjct: 97  ERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVAS 156

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-------- 207
            +     G+Q+H  ++R G   +    G+ L+DMY K+G +  A  VF  ME        
Sbjct: 157 ALGDRALGRQVHCQILRLGFG-AYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCN 215

Query: 208 -----------------------ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
                                  E D I+W ++++G   +G    ALD F  MR  G   
Sbjct: 216 TMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI 275

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D+YT   ++ AC  L  L++GKQ+ A   +  +  N  V SA +D++SKC     SVRL 
Sbjct: 276 DQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCR----SVRLA 331

Query: 305 EQLDR---WDYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
           E + R   W   +    MI  YG+ G GE A+ +F  M R+ I+P +FTL  V+SS   +
Sbjct: 332 EAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANL 391

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             +E G+QFH +A+ SG      V+++L+ +Y K GSI+ +  +F ++   D VSW  ++
Sbjct: 392 ASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 451

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
           MG  Q G+A ET+D+FE++L +G+ PD +T   VL AC+  G VDKG   F +M++++ +
Sbjct: 452 MGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDI 511

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
           +P ++HY C+IDL  ++G L +A +    MP  P    W ++L A  + GD+++ +  AE
Sbjct: 512 VPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAE 571

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
            ++ L   +P  Y LL   +A +G W  + ++++ MR   + K  GCSWI  KN+++ F+
Sbjct: 572 NLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFS 631

Query: 600 AGELQHHGGQKIYLVLRLLTWEMEDEG 626
           A +  H   + IY  L+ L  +M +EG
Sbjct: 632 ADDQSHPFSRTIYEKLQWLNSKMVEEG 658



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 214/408 (52%), Gaps = 16/408 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L DR L        + +H  + +LGF A+ + G+  +D+Y++ G   D  ++FDE+  
Sbjct: 156 SALGDRAL-------GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEG 208

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +  N  + GLL+   +  A  +F+ I E D ++W +M++G    G    AL++F +M
Sbjct: 209 KNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRM 268

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +GV    +TF  +L+   +      GKQIH  + R+     NV +G++L+DMY K   
Sbjct: 269 RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE-DNVFVGSALVDMYSKCRS 327

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M   +IISW ++I G   +G GE A+  F  M+  G  PD++T+  VI++
Sbjct: 328 VRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISS 387

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L++G Q   L++  G      V +A + L+ KC  +ED+ RLF+++   D    
Sbjct: 388 CANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 447

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
             ++  Y ++G  +  ++LF+ ML + ++P   T   VLS+      V+ G S FHSM  
Sbjct: 448 TALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQ 507

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNTIM 419
                      + ++++Y+++G +  + E F+K   R  D   W T++
Sbjct: 508 DHDIVPLDDHYTCMIDLYSRSGWLKQAEE-FIKQMPRCPDAFGWATLL 554


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 200/615 (32%), Positives = 329/615 (53%), Gaps = 42/615 (6%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           ++H  ++KLGF++  ++G   +D YS  G ++                   C R      
Sbjct: 166 SVHACVYKLGFDSDAFVGTALIDCYSVCGYAE-------------------CAR------ 200

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILL 154
                 +VFD I   D+VSW  M++ Y      + +L++FS+M++ G +P+ FTF S+L 
Sbjct: 201 ------QVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLK 254

Query: 155 STVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           + V       GK +HG   ++   L  + +G  LID+Y K G +  A  VF  M + D+I
Sbjct: 255 ACVGLEVFNVGKAVHGCAFKTSY-LEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVI 313

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            W+ +I+    S   E A++ F  MR     P+++T++ ++ AC  L +L  G Q+    
Sbjct: 314 PWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHV 373

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VKVG   N  V +A +D+++KC R+E+S++LF +         N +I  Y + G GE AL
Sbjct: 374 VKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKAL 433

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF+ ML   ++ TE T S VL +   I  +E GSQ HS+++K+ +D N VV ++L++MY
Sbjct: 434 ILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMY 493

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G+I  +  +F  L + D VSWN ++ G + +G   E L  FE +LE    PD++T  
Sbjct: 494 AKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFV 553

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L AC+  G +D+G   F +M EEY + P  EHY C++ LL ++G L KA  +   +PF
Sbjct: 554 GILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPF 613

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W ++L A  I+ DV+L    A+R+++++      + LL+  YA   RW  +  +
Sbjct: 614 EPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASI 673

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG----- 626
           +  M++ GI K  G SWI  + R++ F+ G+  H   + I  +L  L  +  +EG     
Sbjct: 674 RTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDF 733

Query: 627 -CVYLECDKLDVEGR 640
             V L+ + +D E R
Sbjct: 734 SSVLLDVEDVDKEQR 748



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 212/389 (54%), Gaps = 8/389 (2%)

Query: 76  IPQKNCISW---NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           I + NC+     NI L   +K D+L  A K+FDE+P+ + VS+ ++I GY+ C     A+
Sbjct: 71  IKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAI 130

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDM 189
            +FS++Q +G   + F FS +L  + SA   K    +H  + + G   S+  +G +LID 
Sbjct: 131 GLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFD-SDAFVGTALIDC 189

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y   G    A  VF  +E  D++SW  +++    +   E +L  F  MR  G+ P+ +T 
Sbjct: 190 YSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTF 249

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + V+ AC  L   + GK V   + K  +L    V    IDL+ K   ++D++++FE++ +
Sbjct: 250 ASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPK 309

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
            D    + MI+ Y +    E A+E+F  M R  + P +FTL+ +L +   +  ++ G+Q 
Sbjct: 310 DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQI 369

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H   +K G D N  V+++LM+MYAK G +++S ++F +      VSWNT+++G  Q G  
Sbjct: 370 HCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNG 429

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLAC 457
            + L +F+++LE  +    +T ++VL AC
Sbjct: 430 EKALILFKDMLECQVQGTEVTYSSVLRAC 458



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 190/390 (48%), Gaps = 37/390 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C+  + F+  K +HG  FK  +    ++G   +DLY + G  DD LQ+F+E+P+
Sbjct: 250 ASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPK 309

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I W+                                MI+ YA    S+ A+EMF +M
Sbjct: 310 DDVIPWSF-------------------------------MIARYAQSEQSEEAIEMFCRM 338

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   V P+ FT + LL   +S      G QIH  +++ GL + NV + N+L+DMY K G 
Sbjct: 339 RRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDM-NVFVSNALMDMYAKCGR 397

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  +  +F        +SWN++I G   +G GE AL  F  M        E T S V+ A
Sbjct: 398 MENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRA 457

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +  L+ G Q+ +LSVK  +  N++V +A ID+++KC  ++D+  +F+ L   D    
Sbjct: 458 CAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSW 517

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAI 373
           N MIS Y  +G    AL+ F+ ML  + +P + T   +LS+     +    Q  F SM  
Sbjct: 518 NAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVE 577

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           +   +  A   + ++ +  ++G +D + ++
Sbjct: 578 EYDIEPCAEHYTCMVWLLGRSGHLDKAAKL 607


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 199/649 (30%), Positives = 339/649 (52%), Gaps = 39/649 (6%)

Query: 16  SYCSQLIDRCLSFKSFD---FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           +Y S  I +C+   + +   + K IHG++ +      T+L N  +  Y+   +S    ++
Sbjct: 4   NYYSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRV 63

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD IPQ N  SWN  L    K+  +      F+++P+ D V+WN +I GY+  G    A+
Sbjct: 64  FDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAV 123

Query: 133 EMFSKMQLQ-GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLID 188
           + ++ M        +  T   +L   SS  H   GKQIHG +I+ G   S +++G+ L+ 
Sbjct: 124 KAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFE-SYLLVGSPLLY 182

Query: 189 MYGKLGVLYYAFGVFLNME------------------------------ELDIISWNSLI 218
           MY  +G +  A  VF  ++                              E D +SW ++I
Sbjct: 183 MYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMI 242

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
            G   +G  + A++ F  M+  G   D+Y    V+ AC  L  +++GKQ+ A  ++  F 
Sbjct: 243 KGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ 302

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +  V SA ID++ KC  L  +  +F+++ + +      M+  YG+ G  E A+++F  M
Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM 362

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            R  I P  +TL   +S+   +  +E GSQFH  AI SG      V++SL+ +Y K G I
Sbjct: 363 QRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDI 422

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D ST +F +++ RD VSW  ++    Q GRA ET+ +F+++++ GL PD +TL  V+ AC
Sbjct: 423 DDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC 482

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           +  G V+KG   F  M  EYG++P   HY+C+IDL  ++G+L +A+   + MPF P    
Sbjct: 483 SRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIG 542

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W ++L A    G++++ +  AE +++L    P  Y+LL+  YA +G+W+++ ++++ MR+
Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMRE 602

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             + K  G SWI  K ++++F+A +       +IY  L  L  ++ D G
Sbjct: 603 KNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNG 651


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 326/602 (54%), Gaps = 26/602 (4%)

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F A       C+DL     ++D++ Q    I Q +    N  L+ L+K+ +L  A ++FD
Sbjct: 21  FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 80

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSAC--- 161
           ++ + D +SW ++ISGY +   S  AL +F  M+++ G+R   F    +LS    AC   
Sbjct: 81  KMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPF----ILSLAHKACGLN 136

Query: 162 ----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
               +G+ +HG  +++GL +++V +G++L+DMY K G ++    VF  M   +++SW ++
Sbjct: 137 SDVNYGELLHGYAVKTGL-VNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAI 195

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I+G   +GY + AL  F  M  S    D YT +I + AC     L+ G+++ A ++K GF
Sbjct: 196 ITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGF 255

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +S V +    +++KC +LE  + LFE++   D      +I+T  + G  E A++ F  
Sbjct: 256 DVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIR 315

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M   D+ P E+T + V+S    +  +E G Q H++ +  G  ++  V +S+M MYAK G 
Sbjct: 316 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 375

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           + SS+ IF ++ +RD+VSW+TI+ G +Q G  +E  ++   +  EG  P    LA+VL A
Sbjct: 376 LTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 435

Query: 457 CNYGGFVDKGM----------LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
           C     ++ G           L  +AMK  Y + P +EHY C+IDLLC+AG+L  A  + 
Sbjct: 436 CGNMAILEHGKQLHAYVLSIGLEHTAMK--YQISPSKEHYGCMIDLLCRAGRLSDAEHMI 493

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MPF     +W ++LRA  ++GDV+     AER++ L+      +  L   YA +G+W 
Sbjct: 494 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWR 553

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               ++K+M+  G+ K  G SWI +K+ ++ F AG+  H  G+ IY +L LL    E   
Sbjct: 554 EAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELAD 613

Query: 627 CV 628
           CV
Sbjct: 614 CV 615



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/519 (25%), Positives = 239/519 (46%), Gaps = 74/519 (14%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           ++ + +HG+  K G     ++G+  LD+Y++ G   +  ++F E+P +N +SW   + GL
Sbjct: 140 NYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGL 199

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +++                               GY+  AL  FS+M    V    +TF+
Sbjct: 200 VRA-------------------------------GYNKEALVYFSEMWRSRVEYDSYTFA 228

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           I L   + +    +G++IH   ++ G  +S+ V  N+L  MY K G L Y   +F  M  
Sbjct: 229 IALKACADSGALNYGREIHAQAMKKGFDVSSFV-ANTLATMYNKCGKLEYGLTLFEKMSM 287

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SW ++I+     G  E A+  F  MR S  SP+EYT + VI+ C  L  ++ G+Q+
Sbjct: 288 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 347

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            AL + +G  ++  V ++ + +++KC +L  S  +F ++ R D    + +I+ Y + G  
Sbjct: 348 HALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHV 407

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAV---VA 384
             A EL   M  E  +PTEF L+ VLS+   +  +EHG Q H+  +  G +  A+   ++
Sbjct: 408 SEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQIS 467

Query: 385 SS------LMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
            S      ++++  + G +  +  +   +   RD V W+T++     +G         E 
Sbjct: 468 PSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAER 527

Query: 438 LLEEGLPPD----RITLAAVL--------------LACNYGGFVDKGM-------LVFSA 472
           +L+  L P+     ITLA +               L  + G   + G        LVF+ 
Sbjct: 528 ILQ--LEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAF 585

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +  +     GE+ Y  ++DLL    +L   +  T  +P+
Sbjct: 586 VAGDRSHPQGEDIYN-MLDLLASRTELADCVQETGFLPY 623



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 59/330 (17%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFA---------------KTIHGHLFKLGFNAH 49
           L +A  NK +L Y S++    + + S+ FA               + IH    K GF+  
Sbjct: 199 LVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVS 258

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           +++ N    +Y++ G  +  L LF+++  ++ +SW   +  L++                
Sbjct: 259 SFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQ---------------- 302

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQI 166
                           G  + A++ F +M+   V P+ +TF+ ++S  ++      G+Q+
Sbjct: 303 ---------------MGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 347

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H  ++  GL+ S + + NS++ MY K G L  +  +F  M   DI+SW+++I+G    G+
Sbjct: 348 HALILHLGLAAS-LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGH 406

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
              A +    MR  G  P E+ ++ V++AC  +  L+ GKQ+ A  + +G    ++    
Sbjct: 407 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQI 466

Query: 287 T---------IDLFSKCNRLEDSVRLFEQL 307
           +         IDL  +  RL D+  + E +
Sbjct: 467 SPSKEHYGCMIDLLCRAGRLSDAEHMIEAM 496


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 201/597 (33%), Positives = 322/597 (53%), Gaps = 36/597 (6%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K  H    K G +   Y+G+  L++Y + G       +FD                   
Sbjct: 137 GKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGF------VFD------------------- 171

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                 A K+FD +PE + VSW +MISGYAS   +D A+E+F  M+ +    + F  + +
Sbjct: 172 ------ARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSV 225

Query: 154 LSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LS ++S      G+Q+H   I++GL L+ V + N+L+ MY K G L  A   F    + +
Sbjct: 226 LSALTSDVFVYTGRQVHSLAIKNGL-LAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKN 284

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            I+W+++++G    G  + AL  F  M  SG  P E+T+  VINAC+ L  + +GKQ+ +
Sbjct: 285 SITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHS 344

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            + K+GF     VLSA +D+++KC  L D+ + FE + + D  +   +I+ Y + G  E 
Sbjct: 345 FAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEG 404

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            L L+  M  E + P E T++ VL +   +  ++ G Q H+  IK GF     + S+L  
Sbjct: 405 GLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSA 464

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY K GS+D    IF ++  RD++SWN ++ GL+QNG   + L++FE++L EG+ PD +T
Sbjct: 465 MYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVT 524

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              +L AC++ G VD+G   F  M +E+ + P  EHYAC++D+L +AG+L +A +   + 
Sbjct: 525 FVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESA 584

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
               G  +W  +L A   + + +L     E++++L  P    Y LL+  Y   G  E + 
Sbjct: 585 TVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVE 644

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           RV+++M+  G+NK  GCSWI +K  ++ F  G+ QH    +I L L LLT  M DEG
Sbjct: 645 RVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEIRLELELLTKLMIDEG 701



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 236/455 (51%), Gaps = 38/455 (8%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           Q +  C   K+    +T+H  + K G  +  Y+ N  L+LY++       L LFD I   
Sbjct: 16  QDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSI--- 72

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS---CGYSDYALEMFS 136
                         +DN            + D VSWNS+I+ ++       S +A+ +F 
Sbjct: 73  --------------NDN------------DKDDVSWNSLINAFSQNHSSSSSSFAISLFR 106

Query: 137 KM-QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +M +   V P+  T + + S  S+      GKQ H   +++G S  +V +G+SL++MY K
Sbjct: 107 RMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCS-GDVYVGSSLLNMYCK 165

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G ++ A  +F  M E + +SW ++ISG  +S   + A++ F  MR      +E+ ++ V
Sbjct: 166 TGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSV 225

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++A T    +  G+QV +L++K G L+   V +A + +++KC  L+D+VR FE     + 
Sbjct: 226 LSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNS 285

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              + M++ Y + G  + AL+LF  M    + P+EFTL  V+++   +  V  G Q HS 
Sbjct: 286 ITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSF 345

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A K GF     V S++++MYAK GS+  + + F  + + D+V W +I+ G  QNG     
Sbjct: 346 AFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGG 405

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           L+++ ++  E + P+ +T+A+VL AC+    +D+G
Sbjct: 406 LNLYGKMQMERVIPNELTMASVLRACSSLAALDQG 440



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 137/289 (47%), Gaps = 36/289 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C    +    K +H   FKLGF    Y+ +  +D+Y++ G+  D  + F+ + Q  
Sbjct: 326 VINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQ-- 383

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                        PDVV W S+I+GY   G  +  L ++ KMQ+
Sbjct: 384 -----------------------------PDVVLWTSIITGYVQNGDYEGGLNLYGKMQM 414

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + V P+  T + +L   SS      GKQ+H  +I+ G  L  V +G++L  MY K G L 
Sbjct: 415 ERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLE-VPIGSALSAMYTKCGSLD 473

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
             + +F  M   D+ISWN++ISG   +G+G  AL+ F  M   G  PD  T   +++AC+
Sbjct: 474 DGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACS 533

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFE 305
            +  +D+G + F +      ++  +   A  +D+ S+  +L ++    E
Sbjct: 534 HMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIE 582



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT  +N+ KG+ + A  +K G +S+  V +  ++L++K N L  ++ LF+ ++  D   +
Sbjct: 21  CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDV 80

Query: 316 --NVMISTYGR---YGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
             N +I+ + +         A+ LF+ M+R  ++ P   TL+ V S+   +  V  G Q 
Sbjct: 81  SWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQA 140

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           HS+A+K+G   +  V SSL+ MY KTG +  + ++F ++ +R+ VSW T++ G   +  A
Sbjct: 141 HSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIA 200

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            + ++VFE +  E    +   L +VL A     FV  G  V S
Sbjct: 201 DKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHS 243



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 87/174 (50%), Gaps = 9/174 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + D  K +H  + K GF     +G+    +Y++ G+ DD   +F  +P 
Sbjct: 425 ASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPS 484

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ ISWN  + GL ++ + + AL++F+++     +PD V++ +++S  +  G  D   E 
Sbjct: 485 RDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEY 544

Query: 135 FSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLG 183
           F  M  +  + P    ++ ++  +S A    +    I  + +  GL L  ++LG
Sbjct: 545 FKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLG 598


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 301/532 (56%), Gaps = 6/532 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A +VFD +P+ +  SW++M++GYA+   S+ A ++F  M  +     S F  + +LS VS
Sbjct: 66  ARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 125

Query: 159 ---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G+Q+HG +++ GL L  V + NSL+ MY K G +  AF VF +  E + I+W+
Sbjct: 126 VPLGLLMGEQMHGLIVKDGL-LDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWS 184

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++I+G   +G  + A+  F  M  +G++P E+T   V+NA + L  L  GKQ   L VK+
Sbjct: 185 AMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKL 244

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           GF     V SA +D+++KC  + D+   F+QL   D  +   M+S + + G  E AL L+
Sbjct: 245 GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLY 304

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M +E I P++ T++  L +   I  +E G Q H+  +K G    A V S+L  MY+K 
Sbjct: 305 ARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKC 364

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G+++    +F ++  RD+++WN+I+ G +QNG     LD+FEE+  EG  PD IT   +L
Sbjct: 365 GNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINIL 424

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G VD+G   FS M ++YG+ P  +HYAC++D+L +AG L +A D   ++    G
Sbjct: 425 CACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHG 484

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             +W  +L A     D  +     ER+M+L       Y LL+  YA + +W  + RV+ +
Sbjct: 485 TCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHL 544

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           MR  G+NK  GCSW+ + +R++ F  GE QH   + I   LR L   M+DEG
Sbjct: 545 MRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEG 596



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 151/286 (52%), Gaps = 5/286 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+  +  A  VF+   E + ++W++MI+GYA  G +D A+ MFS+M   G  P+ FTF  
Sbjct: 161 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 220

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   S + +   GKQ HG M++ G  +  + + ++L+DMY K G +  A   F  + E+
Sbjct: 221 VLNASSDLGALAVGKQAHGLMVKLGFEV-QIYVKSALVDMYAKCGCIADAKEGFDQLYEV 279

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DI+ W +++SG   +G  E AL  +  M   G  P + TI+  + AC  +  L+ GKQ+ 
Sbjct: 280 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 339

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              VK G    + V SA   ++SKC  LED + +F ++   D    N +IS + + G G 
Sbjct: 340 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 399

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            AL+LF+ M  E   P   T   +L +   +  V+ G ++ S+  K
Sbjct: 400 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 445



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 175/349 (50%), Gaps = 4/349 (1%)

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
           ++SNV +  SL++MY KLG++  A  VF  M + +  SW+++++G       E A D F 
Sbjct: 43  AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR 102

Query: 236 SMRYSGYS-PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
            M     S   E+  + V++A +    L  G+Q+  L VK G L    V ++ + +++K 
Sbjct: 103 LMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKA 162

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             +  +  +FE     +    + MI+ Y + G  + A+ +F  M      PTEFT   VL
Sbjct: 163 GCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVL 222

Query: 355 -SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +S  +  +  G Q H + +K GF+    V S+L++MYAK G I  + E F +L + D+V
Sbjct: 223 NASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIV 282

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            W  ++ G  QNG   E L ++  + +EG+ P + T+A+ L AC     ++ G  + + +
Sbjct: 283 LWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQI 342

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             +YG+  G    + +  +  + G L   + +   +P +   + W SI+
Sbjct: 343 V-KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIA-WNSII 389



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 36/278 (12%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K  HG + KLGF    Y+ +  +D+Y++ G   D  + FD++ + +             
Sbjct: 234 GKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVD------------- 280

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                             +V W +M+SG+   G  + AL ++++M  +G+ PS  T +  
Sbjct: 281 ------------------IVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASG 322

Query: 154 L---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   + +++   GKQ+H  +++ GL L   V G++L  MY K G L     VF  + + D
Sbjct: 323 LRACAGIAALEPGKQLHTQIVKYGLGLGAPV-GSALSTMYSKCGNLEDGMSVFRRIPDRD 381

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +I+WNS+ISG   +G G  ALD F  M+  G  PD  T   ++ AC+ +  +D+G + F+
Sbjct: 382 VIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFS 441

Query: 271 LSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           L  K  G        +  +D+ S+   L+++    E +
Sbjct: 442 LMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 479



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K +H  + K G      +G+    +YS+ G  +D + +F  IP ++ I+W
Sbjct: 326 CAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAW 385

Query: 85  NICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + G  ++   + AL +F+E+      PD +++ +++   +  G  D   E FS M  
Sbjct: 386 NSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 445

Query: 141 Q-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLG 183
             G+ P    ++ ++  +S A   K+    I    I  G  L  +VLG
Sbjct: 446 DYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 493



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)

Query: 369 HSMAIK-SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           H++A K     SN  V +SL+ MY K G +  +  +F  + +R+  SW+T++ G      
Sbjct: 34  HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 93

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           + E  D+F  +LEE  P ++    A                V SA+    G++ GE+ + 
Sbjct: 94  SEEAFDLFRLMLEE-CPSEKSEFVAT--------------AVLSAVSVPLGLLMGEQMHG 138

Query: 488 CII 490
            I+
Sbjct: 139 LIV 141


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 200/701 (28%), Positives = 360/701 (51%), Gaps = 76/701 (10%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           +S   +  +  +A L +C  ++  C   + F+F K +HG + K GF++ TY+ N  + LY
Sbjct: 237 ISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLY 296

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWN 116
           SR G      Q+F  + Q++ +S+N  + GL +   ++ AL +F ++     +PD V+  
Sbjct: 297 SRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVA 356

Query: 117 SMISGYASCG-------YSDYAL------------------------------------- 132
           S++S  AS G       +  YA+                                     
Sbjct: 357 SLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQL 416

Query: 133 -------EMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVL 182
                  ++F++MQ++G+ P+ FT+  +L   +T+ +   G+QIH  ++++G    NV +
Sbjct: 417 DNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF-NVYV 475

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
            + LIDMY K G L +A  +F  ++E D++SW ++I+G         AL+ F  M+  G 
Sbjct: 476 SSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGI 535

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
             D    +  I+AC  ++ LD+G+Q+ A S   G+  +  + +A + L+++C ++ ++  
Sbjct: 536 KSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYA 595

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPP 361
            F+Q+   D    N ++S + + G+ E AL +F  M +  +    FT  S V ++  I  
Sbjct: 596 AFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIAN 655

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           V  G Q H M  K+G+DS   V+++L+ +YAK G+ID              +SWN+++ G
Sbjct: 656 VRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITG 702

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
            +Q+G   E L +FE++ +  + P+ +T   VL AC++ G VD+G+  F +M E + ++P
Sbjct: 703 YSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVP 762

Query: 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             EHYAC++DLL ++G L +A      MP QP   +W ++L A  ++ ++ + E  A  +
Sbjct: 763 KPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHL 822

Query: 542 MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG 601
           ++L+      Y L++  YA+ G+W+   R +++M+  G+ K  G SW+ + N ++ F AG
Sbjct: 823 LELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAG 882

Query: 602 ELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL--DVEGR 640
           +  H     IY  LR L +   + G V   C+ L  D E R
Sbjct: 883 DQNHPRADMIYEYLRGLDFRAAENGYV-PRCNSLLSDAEIR 922



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 213/439 (48%), Gaps = 61/439 (13%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           SF F + IH      GF + T++ N  +DLY                             
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLY----------------------------- 209

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGF 148
              K+  L +A KVF+ +   D VSW +MISG +  GY + A+ +F ++ L    +   F
Sbjct: 210 --FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFF 267

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            F            GKQ+HG +++ G S S   + N+L+ +Y + G L  A  +F  M +
Sbjct: 268 EF------------GKQLHGLVLKQGFS-SETYVCNALVTLYSRSGNLSSAEQIFHCMSQ 314

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D +S+NSLISG    GY   AL  F  M      PD  T++ +++AC  +  L  GKQ 
Sbjct: 315 RDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQF 374

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            + ++K G  S+ +V  + +DL+ KC+ ++ +   F                 YG+    
Sbjct: 375 HSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNL 419

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             + ++F  M  E I P +FT   +L +   +   + G Q H+  +K+GF  N  V+S L
Sbjct: 420 NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVL 479

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G +D + +IF +L + D+VSW  ++ G TQ+ +  E L++F+E+ ++G+  D 
Sbjct: 480 IDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDN 539

Query: 448 ITLAAVLLACNYGGFVDKG 466
           I  A+ + AC     +D+G
Sbjct: 540 IGFASAISACAGIQALDQG 558



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 216/458 (47%), Gaps = 37/458 (8%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L+ A+ VFDE+P   +  WN + + + +         +F +M  + V      F+++L 
Sbjct: 112 DLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLR 171

Query: 156 TVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             S         +QIH   I SG   S+  + N LID+Y K G L  A  VF N++  D 
Sbjct: 172 GCSGNAVSFRFVEQIHAKTITSGFE-SSTFICNPLIDLYFKNGFLSSAKKVFENLKARDS 230

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW ++ISG   +GY E A+  F                IV++ACTK+   + GKQ+  L
Sbjct: 231 VSWVAMISGLSQNGYEEEAMLLF--------------CQIVLSACTKVEFFEFGKQLHGL 276

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K GF S + V +A + L+S+   L  + ++F  + + D    N +IS   + G+   A
Sbjct: 277 VLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L LF+ M  +  +P   T++ +LS+   +  + +G QFHS AIK+G  S+ VV  SL+++
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDL 396

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K   I ++ E F+   + D ++               ++  +F ++  EG+ P++ T 
Sbjct: 397 YVKCSDIKTAHEFFLCYGQLDNLN---------------KSFQIFTQMQIEGIVPNQFTY 441

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            ++L  C   G  D G  + + + +  G        + +ID+  + G+L  A+ I   + 
Sbjct: 442 PSILKTCTTLGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK 500

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
                S W +++     +       N+ + M D  + S
Sbjct: 501 ENDVVS-WTAMIAGYTQHDKFTEALNLFKEMQDQGIKS 537



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 137/547 (25%), Positives = 228/547 (41%), Gaps = 87/547 (15%)

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK 164
           DEIPE +    N M    +  GY          M+  GVR +  TF  LL      C   
Sbjct: 50  DEIPEKE----NEMDGNASGIGY-------LHLMEQHGVRANSQTFLWLLE----GC--- 91

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
                     L+  +   G  LID Y   G L  A  VF  M    +  WN +    FN+
Sbjct: 92  ----------LNSRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRI----FNT 137

Query: 225 GYGELALDQ----FYSMRYSGYSPDEYTISIVINACT-KLRNLDKGKQVFALSVKVGFLS 279
              E  + +    F  M       DE   ++V+  C+    +    +Q+ A ++  GF S
Sbjct: 138 FIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFES 197

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           ++ + +  IDL+ K   L  + ++FE L   D      MIS   + G+ E A+ LF  ++
Sbjct: 198 STFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV 257

Query: 340 REDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
                  EF              E G Q H + +K GF S   V ++L+ +Y+++G++ S
Sbjct: 258 LSACTKVEF-------------FEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSS 304

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           + +IF  + +RD VS+N+++ GL Q G     L +F+++  +   PD +T+A++L AC  
Sbjct: 305 AEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACAS 364

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL--------------LC--QAGQLGKAI 503
            G +  G   F +   + G+         ++DL              LC  Q   L K+ 
Sbjct: 365 VGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSF 423

Query: 504 DITSTMPFQ---PGCSIWESILRASAIYGDVKLTENVAERMMDLQLP-SPLPYSLLTQAY 559
            I + M  +   P    + SIL+     G   L E +  +++      +    S+L   Y
Sbjct: 424 QIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMY 483

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G+ +  +++ + +++N +      SW  +        AG  QH    K    L L  
Sbjct: 484 AKHGKLDHALKIFRRLKENDV-----VSWTAMI-------AGYTQH---DKFTEALNLFK 528

Query: 620 WEMEDEG 626
            EM+D+G
Sbjct: 529 -EMQDQG 534


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 307/545 (56%), Gaps = 11/545 (2%)

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRP 145
           C  GL+    L     VFDE+P  + VSW +M++GYA+   S  A E+F +M  +  +  
Sbjct: 164 CKLGLIPDAQL-----VFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHK 218

Query: 146 SGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           + F  + +LS +S       G Q+HG +++ G+ +  V + NSL+ MY K G +  AF V
Sbjct: 219 NEFVATAVLSAISVPLGLPMGVQVHGLVVKDGM-VGFVSVENSLVTMYAKAGCMDAAFHV 277

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F + +E + I+W+++I+G   +G  E A+  F  M  +G+ P E+T+  V+NAC+ +  L
Sbjct: 278 FESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTL 337

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            +GKQ   L VK+GF     V SA +D+++KC  + D+   F Q    D  +   M++ +
Sbjct: 338 MEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGH 397

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G  E AL L+  M +E + P   T++ +L +   +  +E G Q H+  +K GF   A
Sbjct: 398 VQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGA 457

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V S+L  MY+K G+++    +F ++  RD+++WN+I+ G +QNGR  + +++FEE+  E
Sbjct: 458 SVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLE 517

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G  PD +T   VL AC++ G VD+G   F +M ++YG+ P  +HYAC++D+L +AG L +
Sbjct: 518 GTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSE 577

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A D   ++    G  +W  +L A     D  +     E++MDL       Y LL+  YA 
Sbjct: 578 AKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAA 637

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
           + +W  + RV+ +M+  G++K  GCSW+ + +R++ F  GE QH   + I   LR L   
Sbjct: 638 QRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRVHVFVVGEQQHPDAEIINTELRRLGKH 697

Query: 622 MEDEG 626
           M+DEG
Sbjct: 698 MKDEG 702



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 139/582 (23%), Positives = 250/582 (42%), Gaps = 68/582 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    K G ++H  + N  +  YS F       +LF                     
Sbjct: 32  EALHAWALKSGSSSHAPVSNSLITFYSSFP------RLF--------------------- 64

Query: 95  DNLDTALKVFDEIPEP--DVVSWNSMI---SGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
             L  A  VF +IP    DV SWNS++   S +       +   M S   +     S   
Sbjct: 65  --LPAAFAVFADIPAAARDVASWNSLLNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAA 122

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
                +   SA  G  +H    +   + SNV +  +L++MY KLG++  A  VF  M   
Sbjct: 123 AFTAAARAHSASAGAVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHR 182

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP---DEYTISIVINACTKLRNLDKGK 266
           + +SW ++++G       + A + F  M   G  P   +E+  + V++A +    L  G 
Sbjct: 183 NEVSWAAMVAGYAARKCSQEAFELFRQML--GECPLHKNEFVATAVLSAISVPLGLPMGV 240

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           QV  L VK G +    V ++ + +++K   ++ +  +FE     +    + MI+ Y + G
Sbjct: 241 QVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNG 300

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E A+ +F  M      PTEFTL  VL++   +  +  G Q H + +K GF+    V S
Sbjct: 301 NAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKS 360

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L++MYAK G I  + E F +  + D+V W  ++ G  QNG   + L ++  + +EG+ P
Sbjct: 361 ALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFP 420

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + +T+ ++L AC     ++ G  + + +  ++G   G    + +  +  + G L   + +
Sbjct: 421 NTLTITSLLRACAGLAALEPGKQLHTQIL-KFGFGLGASVGSALSTMYSKCGNLEDGMVV 479

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP +   + W SI+   +  G      N+ E  M L+  +P P +            
Sbjct: 480 FRRMPHRDVIA-WNSIISGFSQNGRGNDAINLFEE-MKLEGTAPDPVTF----------- 526

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
                         IN +  CS +G+ +R +T+    ++ +G
Sbjct: 527 --------------INVLCACSHMGLVDRGWTYFRSMIKDYG 554



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 36/291 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C    +    K  HG + KLGF    Y+ +  +D+Y++ G   D  + F++     
Sbjct: 327 VLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQ----- 381

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                  F E+   D+V W +M++G+   G  + AL ++++M  
Sbjct: 382 -----------------------FSEL---DIVLWTAMVTGHVQNGEFEQALMLYARMDK 415

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +GV P+  T + LL   +       GKQ+H  +++ G  L   V G++L  MY K G L 
Sbjct: 416 EGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASV-GSALSTMYSKCGNLE 474

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               VF  M   D+I+WNS+ISG   +G G  A++ F  M+  G +PD  T   V+ AC+
Sbjct: 475 DGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACS 534

Query: 258 KLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +  +D+G   F   +K  G        +  +D+ S+   L ++    E +
Sbjct: 535 HMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESI 585



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    + +  K +H  + K GF     +G+    +YS+ G  +D + +F  +P 
Sbjct: 426 TSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPH 485

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEM 134
           ++ I+WN  + G  ++   + A+ +F+E+      PD V++ +++   +  G  D     
Sbjct: 486 RDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTY 545

Query: 135 FSKM 138
           F  M
Sbjct: 546 FRSM 549


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 191/630 (30%), Positives = 331/630 (52%), Gaps = 38/630 (6%)

Query: 34  AKTIHGHLFKLGFNAH-TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           A  +H  + K    A  T+L N  L  Y++ G      ++FDE+P  N  + N  L  L 
Sbjct: 31  AGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALA 90

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFS 151
            S  +    ++F  +PE D VS+N++I+G++S G    +++++  + + + VRP+  T S
Sbjct: 91  HSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLS 150

Query: 152 ILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME- 207
            ++   S +S    G  +H  ++R G   +   +G+ L+DMY K+G++  A  VF  ME 
Sbjct: 151 AMIMVASALSDRALGHSVHCQVLRLGFG-AYAFVGSPLVDMYAKMGLIRDARRVFQEMEA 209

Query: 208 ------------------------------ELDIISWNSLISGCFNSGYGELALDQFYSM 237
                                         + D I+W ++++G   +G    ALD F  M
Sbjct: 210 KTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRM 269

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R  G   D+YT   ++ AC  L  L++GKQ+ A   +  +  N  V SA +D++SKC  +
Sbjct: 270 RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSI 329

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +  +F ++   +      MI  YG+    E A+  F  M  + I+P +FTL  V+SS 
Sbjct: 330 RLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSC 389

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G+QFH +A+ SG      V+++L+ +Y K GSI+ +  +F ++   D VSW 
Sbjct: 390 ANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 449

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  Q G+A ET+D+FE++L  GL PD +T   VL AC+  G V+KG   F +M+++
Sbjct: 450 ALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKD 509

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           +G++P ++HY C+IDL  ++G+  +A +    MP  P    W ++L +  + G++++ + 
Sbjct: 510 HGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKW 569

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            AE +++    +P  Y LL   +A +G+W  +  +++ MR   + K  GCSWI  KN+++
Sbjct: 570 AAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVH 629

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            F+A +  H    +IY  L  L  +M +EG
Sbjct: 630 IFSADDQSHPFSSRIYEKLEWLNSKMAEEG 659



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 225/452 (49%), Gaps = 18/452 (3%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A +   S L DR L         ++H  + +LGF A+ ++G+  +D+Y++ G   D  ++
Sbjct: 151 AMIMVASALSDRAL-------GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F E+  K  + +N  + GLL+   ++ A  +F  + + D ++W +M++G    G    AL
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           ++F +M+ +GV    +TF  +L+   +      GKQIH  + R+     NV +G++L+DM
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE-DNVFVGSALVDM 322

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K   +  A  VF  M   +IISW ++I G   +   E A+  F  M+  G  PD++T+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             VI++C  L +L++G Q   L++  G +    V +A + L+ KC  +ED+ RLF+++  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ- 367
            D      +++ Y ++G  +  ++LF+ ML   ++P   T   VLS+      VE G   
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNG 426
           F SM    G        + ++++Y+++G    + E   ++    D   W T++      G
Sbjct: 503 FDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                +++ +   E  L  D    A+ +L C+
Sbjct: 563 ----NMEIGKWAAENLLETDPQNPASYVLLCS 590


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 301/532 (56%), Gaps = 6/532 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A +VFD +P+ +  SW++M++GYA+   S+ A ++F  M  +     S F  + +LS VS
Sbjct: 172 ARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 231

Query: 159 ---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G+Q+HG +++ GL L  V + NSL+ MY K G +  AF VF +  E + I+W+
Sbjct: 232 VPLGLLMGEQMHGLIVKDGL-LDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWS 290

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++I+G   +G  + A+  F  M  +G++P E+T   V+NA + L  L  GKQ   L VK+
Sbjct: 291 AMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKL 350

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           GF     V SA +D+++KC  + D+   F+QL   D  +   M+S + + G  E AL L+
Sbjct: 351 GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLY 410

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M +E I P++ T++  L +   I  +E G Q H+  +K G    A V S+L  MY+K 
Sbjct: 411 ARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKC 470

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G+++    +F ++  RD+++WN+I+ G +QNG     LD+FEE+  EG  PD IT   +L
Sbjct: 471 GNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINIL 530

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G VD+G   FS M ++YG+ P  +HYAC++D+L +AG L +A D   ++    G
Sbjct: 531 CACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHG 590

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             +W  +L A     D  +     ER+M+L       Y LL+  YA + +W  + RV+ +
Sbjct: 591 TCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHL 650

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           MR  G+NK  GCSW+ + +R++ F  GE QH   + I   LR L   M+DEG
Sbjct: 651 MRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEG 702



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 9/288 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+  +  A  VF+   E + ++W++MI+GYA  G +D A+ MFS+M   G  P+ FTF  
Sbjct: 267 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 326

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   S + +   GKQ HG M++ G  +  + + ++L+DMY K G +  A   F  + E+
Sbjct: 327 VLNASSDLGALAVGKQAHGLMVKLGFEV-QIYVKSALVDMYAKCGCIADAKEGFDQLYEV 385

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DI+ W +++SG   +G  E AL  +  M   G  P + TI+  + AC  +  L+ GKQ+ 
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              VK G    + V SA   ++SKC  LED + +F ++   D    N +IS + + G G 
Sbjct: 446 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 505

Query: 330 VALELFQLMLREDIRPTEFT---LSCVLSSIPIPPVEHGSQFHSMAIK 374
            AL+LF+ M  E   P   T   + C  S + +  V+ G ++ S+  K
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGL--VDRGWEYFSLMTK 551



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 207/433 (47%), Gaps = 9/433 (2%)

Query: 97  LDTALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           L  A  VFD+IP    DV SWNS+++  +     D      S +    V PS  +F+   
Sbjct: 65  LAAAFAVFDDIPPAARDVTSWNSLLNPLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAF 124

Query: 155 STVSSACHGKQI---HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  + A         H    +   ++SNV +  SL++MY KLG++  A  VF  M + + 
Sbjct: 125 TAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNS 184

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVINACTKLRNLDKGKQVFA 270
            SW+++++G       E A D F  M     S   E+  + V++A +    L  G+Q+  
Sbjct: 185 FSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHG 244

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L VK G L    V ++ + +++K   +  +  +FE     +    + MI+ Y + G  + 
Sbjct: 245 LIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADS 304

Query: 331 ALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+ +F  M      PTEFT   VL +S  +  +  G Q H + +K GF+    V S+L++
Sbjct: 305 AVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVD 364

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G I  + E F +L + D+V W  ++ G  QNG   E L ++  + +EG+ P + T
Sbjct: 365 MYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKST 424

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           +A+ L AC     ++ G  + + +  +YG+  G    + +  +  + G L   + +   +
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIV-KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 510 PFQPGCSIWESIL 522
           P +   + W SI+
Sbjct: 484 PDRDVIA-WNSII 495



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 36/277 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K  HG + KLGF    Y+ +  +D+Y++ G   D  + FD++ + +              
Sbjct: 341 KQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVD-------------- 386

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            +V W +M+SG+   G  + AL ++++M  +G+ PS  T +  L
Sbjct: 387 -----------------IVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGL 429

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              + +++   GKQ+H  +++ GL L   V G++L  MY K G L     VF  + + D+
Sbjct: 430 RACAGIAALEPGKQLHTQIVKYGLGLGAPV-GSALSTMYSKCGNLEDGMSVFRRIPDRDV 488

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           I+WNS+ISG   +G G  ALD F  M+  G  PD  T   ++ AC+ +  +D+G + F+L
Sbjct: 489 IAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSL 548

Query: 272 SVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             K  G        +  +D+ S+   L+++    E +
Sbjct: 549 MTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K +H  + K G      +G+    +YS+ G  +D + +F  IP ++ I+W
Sbjct: 432 CAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAW 491

Query: 85  NICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + G  ++   + AL +F+E+      PD +++ +++   +  G  D   E FS M  
Sbjct: 492 NSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 551

Query: 141 Q-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLG 183
             G+ P    ++ ++  +S A   K+    I    I  G  L  +VLG
Sbjct: 552 DYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 599



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS--IDSSTEIF--VKLDKRDLVSWNTI 418
            HG   H+ A+KSG  S+A VA+SL+  Y+      + ++  +F  +    RD+ SWN++
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSL 88

Query: 419 MMGLTQNGRAAETLDVFEELL 439
           +  L+ + R  + L  F  +L
Sbjct: 89  LNPLSGH-RPLDALSRFRSML 108


>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Glycine max]
          Length = 686

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 197/579 (34%), Positives = 308/579 (53%), Gaps = 9/579 (1%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +    +H H+ +      T L N  LD+Y + G+  D  ++F EIP 
Sbjct: 109 SAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPC 168

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN  SWN  + G  K   +  A  +FD++PEPD+VSWNS+I+G A    S +AL+  S M
Sbjct: 169 KNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLAD-NASPHALQFLSMM 227

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++   FTF   L     +     G+QIH  +I+SGL  S   + +SLIDMY    +
Sbjct: 228 HGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCYCI-SSLIDMYSNCKL 286

Query: 196 LYYAFGVFLNMEEL--DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           L  A  +F     L   +  WNS++SG   +G    AL     M +SG   D YT SI +
Sbjct: 287 LDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIAL 346

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
             C    NL    QV  L +  G+  + +V S  IDL++K   +  ++RLFE+L   D  
Sbjct: 347 KVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNKDVV 406

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMA 372
             + +I    R G G +   LF  M+  D+    F LS VL  S  +  ++ G Q HS  
Sbjct: 407 AWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFC 466

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K G++S  V+ ++L +MYAK G I+ +  +F  L + D +SW  I++G  QNGRA + +
Sbjct: 467 LKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTGIIVGCAQNGRADKAI 526

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +  +++E G  P++IT+  VL AC + G V++   +F +++ E+G+ P  EHY C++D+
Sbjct: 527 SILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYNCMVDI 586

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
             +AG+  +A ++ + MPF+P  +IW S+L A   Y +  L   VAE ++         Y
Sbjct: 587 FAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKNRHLANIVAEHLLATSPEDASVY 646

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
            +L+  YA  G W+ + +V++ +RK GI K  G SWI I
Sbjct: 647 IMLSNVYASLGMWDNLSKVREAVRKVGI-KGAGKSWIEI 684



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 215/447 (48%), Gaps = 18/447 (4%)

Query: 20  QLIDRCLS-FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           QL  RC   F++   AK++H  + KLG + H +L N  + +Y++    DD   LFDE+P 
Sbjct: 7   QLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPH 66

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI--SGYASCG-YSDYALEMF 135
           +N +S+   +     S     AL +++ + E   V  N  +  +   +CG   D  L M 
Sbjct: 67  RNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGML 126

Query: 136 SKMQLQGVRPSGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
                Q V  +   F  +L      +   C G  +    +   +   N    N+LI  + 
Sbjct: 127 VH---QHVSEARLEFDTVLMNALLDMYVKC-GSLMDAKRVFHEIPCKNSTSWNTLILGHA 182

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTIS 250
           K G++  AF +F  M E D++SWNS+I+G  ++     AL QF SM +  G   D +T  
Sbjct: 183 KQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPH-AL-QFLSMMHGKGLKLDAFTFP 240

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
             + AC  L  L  G+Q+    +K G   +   +S+ ID++S C  L++++++F++    
Sbjct: 241 CALKACGLLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPL 300

Query: 311 --DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQ 367
               AV N M+S Y   G    AL +   M     +   +T S  L   I    +   SQ
Sbjct: 301 AESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQ 360

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H + I  G++ + VV S L+++YAK G+I+S+  +F +L  +D+V+W+++++G  + G 
Sbjct: 361 VHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGL 420

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVL 454
                 +F +++   L  D   L+ VL
Sbjct: 421 GTLVFSLFMDMVHLDLEIDHFVLSIVL 447



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 159/353 (45%), Gaps = 38/353 (10%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   I + +  C + + +   K + +L +K+G  ++  +L++ I +++KC+R +D+  LF
Sbjct: 2   DLNQIQLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLF 61

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPV 362
           +++   +      M+S +   G    AL L+  ML  + ++P +F  S VL +   +  V
Sbjct: 62  DEMPHRNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDV 121

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           E G   H    ++  + + V+ ++L++MY K GS+  +  +F ++  ++  SWNT+++G 
Sbjct: 122 ELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGH 181

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG---MLVFSAMKEEYGV 479
            + G   +  ++F+++ E    PD ++  +++      G  D      L F +M    G+
Sbjct: 182 AKQGLMRDAFNLFDQMPE----PDLVSWNSII-----AGLADNASPHALQFLSMMHGKGL 232

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA--------IYGDV 531
                 + C +      G+L        TM  Q  C I +S L  S         +Y + 
Sbjct: 233 KLDAFTFPCALKACGLLGEL--------TMGRQIHCCIIKSGLECSCYCISSLIDMYSNC 284

Query: 532 KLTENVAERMMDLQLPSPLPYSL-----LTQAYAMRGRWEAIVRVKKVMRKNG 579
           KL +   E M      SPL  SL     +   Y   G W   + +   M  +G
Sbjct: 285 KLLD---EAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSG 334


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 191/630 (30%), Positives = 331/630 (52%), Gaps = 38/630 (6%)

Query: 34  AKTIHGHLFKLGFNAH-TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           A  +H  + K    A  T+L N  L  Y++ G      ++FDE+P  N  + N  L  L 
Sbjct: 31  AGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALA 90

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFS 151
            S  +    ++F  +PE D VS+N++I+G++S G    +++++  + + + VRP+  T S
Sbjct: 91  HSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLS 150

Query: 152 ILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME- 207
            ++   S +S    G  +H  ++R G   +   +G+ L+DMY K+G++  A  VF  ME 
Sbjct: 151 AMIMVASALSDRALGHSVHCQVLRLGFG-AYAFVGSPLVDMYAKMGLIRDARRVFQEMEA 209

Query: 208 ------------------------------ELDIISWNSLISGCFNSGYGELALDQFYSM 237
                                         + D I+W ++++G   +G    ALD F  M
Sbjct: 210 KTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRM 269

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R  G   D+YT   ++ AC  L  L++GKQ+ A   +  +  N  V SA +D++SKC  +
Sbjct: 270 RAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSI 329

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +  +F ++   +      MI  YG+    E A+  F  M  + I+P +FTL  V+SS 
Sbjct: 330 RLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSC 389

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G+QFH +A+ SG      V+++L+ +Y K GSI+ +  +F ++   D VSW 
Sbjct: 390 ANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 449

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  Q G+A ET+D+FE++L  GL PD +T   VL AC+  G V+KG   F +M+++
Sbjct: 450 ALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKD 509

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           +G++P ++HY C+IDL  ++G+  +A +    MP  P    W ++L +  + G++++ + 
Sbjct: 510 HGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKW 569

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            AE +++    +P  Y LL   +A +G+W  +  +++ MR   + K  GCSWI  KN+++
Sbjct: 570 AAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVH 629

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            F+A +  H    +IY  L  L  +M +EG
Sbjct: 630 IFSADDQSHPFSSRIYEKLEWLNSKMAEEG 659



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 225/452 (49%), Gaps = 18/452 (3%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A +   S L DR L         ++H  + +LGF A+ ++G+  +D+Y++ G   D  ++
Sbjct: 151 AMIMVASALSDRAL-------GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F E+  K  + +N  + GLL+   ++ A  +F  + + D ++W +M++G    G    AL
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           ++F +M+ +GV    +TF  +L+   +      GKQIH  + R+     NV +G++L+DM
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE-DNVFVGSALVDM 322

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K   +  A  VF  M   +IISW ++I G   +   E A+  F  M+  G  PD++T+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             VI++C  L +L++G Q   L++  G +    V +A + L+ KC  +ED+ RLF+++  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ- 367
            D      +++ Y ++G  +  ++LF+ ML   ++P   T   VLS+      VE G   
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNG 426
           F SM    G        + ++++Y+++G    + E   ++    D   W T++      G
Sbjct: 503 FDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                +++ +   E  L  D    A+ +L C+
Sbjct: 563 ----NMEIGKWAAENLLETDPQNPASYVLLCS 590


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/660 (30%), Positives = 351/660 (53%), Gaps = 81/660 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    SF    ++H  +F  GF  + ++GN  + +Y R G  ++  Q+FDE+ +  
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRE-- 189

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                   RG+                   D+VSWNS+++ Y   G S  A++MF +M  
Sbjct: 190 --------RGV------------------GDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223

Query: 141 Q-GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G+RP   +   +L   ++V +   GKQ+HG  +RSGL   +V +GN+++DMY K G++
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGL-FEDVFVGNAVVDMYAKCGMM 282

Query: 197 YYAFGVFLNME-----------------------------------ELDIISWNSLISGC 221
             A  VF  M+                                   EL++++W+++I+G 
Sbjct: 283 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 342

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK--VGFLS 279
              G G  ALD F  MR  G  P+  T+  +++ C     L  GK+    ++K  +    
Sbjct: 343 AQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDE 402

Query: 280 NS-----IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVAL 332
           N      +V++A ID++SKC   + +  +F+ +   D +V+   V+I    ++G    AL
Sbjct: 403 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 462

Query: 333 ELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASSLM 388
           ELF  ML+ D  + P  FT+SC L +   +  +  G Q H+  +++ F+S  + VA+ L+
Sbjct: 463 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 522

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K+G +D++  +F  + +R+ VSW ++M G   +GR  E L +F E+ + GL PD +
Sbjct: 523 DMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGV 582

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G VD+G+  F+ M +++GV+PG EHYAC++DLL +AG+L +A+++   
Sbjct: 583 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 642

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP +P  ++W ++L A  +Y +V+L E  A ++++L+  +   Y+LL+  YA    W+ +
Sbjct: 643 MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDV 702

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            R++ +M+  GI K  GCSW+  +    TF AG+  H   Q+IY +LR L   ++  G V
Sbjct: 703 ARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYV 762



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/472 (25%), Positives = 213/472 (45%), Gaps = 56/472 (11%)

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHG 168
           V  WN +I      G+ +  L+++ +MQ  G RP  +TF  +L     + S   G  +H 
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSG 225
            +  SG    NV +GN L+ MYG+ G    A  VF  M E    D++SWNS+++     G
Sbjct: 151 VVFASGFEW-NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 226 YGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
               A+  F  M    G  PD  ++  V+ AC  +    +GKQV   +++ G   +  V 
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI- 343
           +A +D+++KC  +E++ ++FE++   D    N M++ Y + G  + AL LF+ +  E I 
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 344 ----------------------------------RPTEFTLSCVLSSIPIP-PVEHGSQF 368
                                              P   TL  +LS   +   + HG + 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 369 HSMAIKS--GFDSN-----AVVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIM 419
           H  AIK     D N      +V ++L++MY+K  S  ++  +F  +    R +V+W  ++
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 420 MGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
            G  Q+G A E L++F ++L+    + P+  T++  L+AC   G +  G  + + +    
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                     C+ID+  ++G +  A  +   M  + G S W S++    ++G
Sbjct: 510 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYGMHG 560



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 11/331 (3%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEE 208
           S L     S    + IH  ++  GL          +I MY        A  V   L+   
Sbjct: 33  STLFHQCKSLASAELIHQQLLVQGLPHDPT----HIISMYLTFNSPAKALSVLRRLHPSS 88

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             +  WN LI    + G+ E  L  +  M+  G+ PD YT   V+ AC ++ +   G  V
Sbjct: 89  HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASV 148

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW---DYAVINVMISTYGRY 325
            A+    GF  N  V +  + ++ +C   E++ ++F+++      D    N +++ Y + 
Sbjct: 149 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 208

Query: 326 GFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
           G    A+++F+ M  +  IRP   +L  VL +   +     G Q H  A++SG   +  V
Sbjct: 209 GDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFV 268

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +++++MYAK G ++ + ++F ++  +D+VSWN ++ G +Q GR  + L +FE++ EE +
Sbjct: 269 GNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKI 328

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
             + +T +AV+      G   + + VF  M+
Sbjct: 329 ELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/627 (29%), Positives = 332/627 (52%), Gaps = 39/627 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + ++ + +H  + + G   +  +GN  + +Y++ G+  D            
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRD------------ 198

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A +VFD +   D VSW ++   YA  GY+  +L+ +  M  
Sbjct: 199 -------------------ARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +GVRPS  T+  +LS   S      GKQIH  ++ S    S+V +  +L  MY K G + 
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH-SDVRVSTALTKMYIKCGAVK 298

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   D+I+WN++I G  +SG  E A   F+ M     +PD  T   +++AC 
Sbjct: 299 DAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACA 358

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +   L  GK++ A +VK G +S+    +A I+++SK   ++D+ ++F+++ + D      
Sbjct: 359 RPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTA 418

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSG 376
           ++  Y   G    +   F+ ML++ +   + T  CVL +   P  ++ G + H+  +K+G
Sbjct: 419 LVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 478

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             ++  VA++LM MY K GS++ +  +   +  RD+V+WNT++ GL QNGR  E L  FE
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFE 538

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            +  E + P+  T   V+ AC     V++G   F++M+++YG++P E+HYAC++D+L +A
Sbjct: 539 VMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARA 598

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G LG+A D+  TMPF+P  ++W ++L A   +G+V++ E  AE+ + L+  +   Y  L+
Sbjct: 599 GHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLS 658

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G W  + +++K+M++ G+ K  G SWI +   +++F AG+  H   ++IY  L 
Sbjct: 659 FIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELE 718

Query: 617 LLTWEMEDEGCV---YLECDKLDVEGR 640
            LT +++  G V         LD EG+
Sbjct: 719 ALTKQIKSLGYVPDTRFVMHDLDQEGK 745



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 222/443 (50%), Gaps = 36/443 (8%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L+  C+  K     K +H H+ + G   + Y+ N  L LY   G+ ++  +LFD+   K
Sbjct: 49  KLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNK 108

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           +                               VVSWN MISGYA  G    A  +F+ MQ
Sbjct: 109 S-------------------------------VVSWNVMISGYAHRGLGQEAFNLFTLMQ 137

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G+ P  FTF  +LS  SS      G+++H  ++ +GL+ +N  +GN+LI MY K G +
Sbjct: 138 QEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLA-NNATVGNALISMYAKCGSV 196

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  M   D +SW +L      SGY + +L  +++M   G  P   T   V++AC
Sbjct: 197 RDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSAC 256

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             L  L+KGKQ+ A  V+    S+  V +A   ++ KC  ++D+  +FE L   D    N
Sbjct: 257 GSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWN 316

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
            MI      G  E A  +F  ML+E + P   T   +LS+   P  +  G + H+ A+K 
Sbjct: 317 TMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD 376

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G  S+    ++L+ MY+K GS+  + ++F ++ KRD+VSW  ++ G    G+  E+   F
Sbjct: 377 GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTF 436

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
           +++L++G+  ++IT   VL AC+
Sbjct: 437 KKMLQQGVEANKITYMCVLKACS 459



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 201/371 (54%), Gaps = 6/371 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GKQ+H  ++R G+   NV + N+L+ +Y   G +  A  +F       ++SWN +ISG  
Sbjct: 63  GKQVHEHILRFGMK-PNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYA 121

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           + G G+ A + F  M+  G  PD++T   +++AC+    L+ G++V    ++ G  +N+ 
Sbjct: 122 HRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT 181

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A I +++KC  + D+ R+F+ +   D      +   Y   G+ + +L+ +  ML+E 
Sbjct: 182 VGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEG 241

Query: 343 IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +RP+  T   VLS+   +  +E G Q H+  ++S   S+  V+++L +MY K G++  + 
Sbjct: 242 VRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAR 301

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F  L  RD+++WNT++ GL  +G+  E   +F  +L+E + PDR+T  A+L AC   G
Sbjct: 302 EVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPG 361

Query: 462 FVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
            +  G  + + A+K+  G++        +I++  +AG +  A  +   MP +   S W +
Sbjct: 362 GLACGKEIHARAVKD--GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVS-WTA 418

Query: 521 ILRASAIYGDV 531
           ++   A  G V
Sbjct: 419 LVGGYADCGQV 429



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 16/340 (4%)

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           D    +   G   D Y    ++ +C K ++L  GKQV    ++ G   N  +++  + L+
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
             C  + ++ RLF++         NVMIS Y   G G+ A  LF LM +E + P +FT  
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 352 CVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            +LS+   P  +  G + H   +++G  +NA V ++L+ MYAK GS+  +  +F  +  R
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASR 209

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D VSW T+     ++G A E+L  +  +L+EG+ P RIT   VL AC     ++KG  + 
Sbjct: 210 DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIH 269

Query: 471 SAMKEEYGVMPGEEHYA------CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           + + E        EH++       +  +  + G +  A ++   +P +   + W +++  
Sbjct: 270 AQIVE-------SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIA-WNTMIGG 321

Query: 525 SAIYGDVKLTENVAERMM-DLQLPSPLPYSLLTQAYAMRG 563
               G ++    +  RM+ +   P  + Y  +  A A  G
Sbjct: 322 LVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPG 361


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/595 (31%), Positives = 318/595 (53%), Gaps = 9/595 (1%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK----SD 95
            + +LG   ++Y  +  L  ++     ++  Q+   I +    S+N  +  L+       
Sbjct: 241 QMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGR 300

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS---I 152
            +  A K+FDE+ + DV+SWNSMISGY   G  D  +E+F KM + GV     T     +
Sbjct: 301 KVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFV 360

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + + +   GK +H   I++      V   N+L+DMY K G L  A  VF  M+E  ++
Sbjct: 361 ACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVV 420

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW S+I+G    G  + A+  F  M+  G  PD Y ++ ++NAC    NL  GK V    
Sbjct: 421 SWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI 480

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            +    +NS V +A  D+++KC  ++D+  +F  + + D    N MI  Y +      AL
Sbjct: 481 RENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEAL 540

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M RE  +P   T++C+L +   +  ++ G + H  A+++G+  +  V +++++MY
Sbjct: 541 TLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMY 599

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G +  +  +F  +  +DLVSW  ++ G   +G  +E ++ F ++   G+ PD ++  
Sbjct: 600 VKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFI 659

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           ++L AC++ G +D+G  +F+ MK+E  + P  EHYAC++DLL + G L KA      MP 
Sbjct: 660 SILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPI 719

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P  +IW ++L    I+ DVKL E VAER+ +L+  +   Y LL   YA   +WE + ++
Sbjct: 720 KPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKL 779

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +K + + G+ K  GCSWI IK +I  F AG+      +KI L+L+ L  +M++EG
Sbjct: 780 RKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEG 834



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 231/446 (51%), Gaps = 15/446 (3%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  +L     VFD++ E  +  WN MIS Y+  G    ++ +F +M   G++P+ +TFS
Sbjct: 196 VKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFS 255

Query: 152 ILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L   + V+    G+Q+HG + + G +  N V+ NSLI  Y     +  A  +F  + +
Sbjct: 256 SILKCFAAVARVEEGRQVHGLICKLGFNSYNTVV-NSLISFYFVGRKVRCAQKLFDELTD 314

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+ISWNS+ISG   +G  +  ++ F  M   G   D  T+  V  AC  +  L  GK +
Sbjct: 315 RDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVL 374

Query: 269 FALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
            + S+K   L   +  + T +D++SKC  L  ++R+FE++D         MI+ Y R G 
Sbjct: 375 HSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGL 434

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASS 386
            + A++LF  M    + P  + ++ +L++  I   ++ G   H    ++  ++N+ V+++
Sbjct: 435 SDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNA 494

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L +MYAK GS+  + ++F  + K+D++SWNT++ G T+N    E L +F E+  E   PD
Sbjct: 495 LTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPD 553

Query: 447 RITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYA--CIIDLLCQAGQLGKAI 503
             T+A +L AC     +DKG  +   A++  Y     E+ Y    ++D+  + G L  A 
Sbjct: 554 GTTVACILPACASLAALDKGREIHGYALRNGY----SEDKYVTNAVVDMYVKCGLLVLAR 609

Query: 504 DITSTMPFQPGCSIWESILRASAIYG 529
            +   +P +   S W  ++    ++G
Sbjct: 610 SLFDMIPNKDLVS-WTVMIAGYGMHG 634



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 183/363 (50%), Gaps = 7/363 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++  S+I S   + + +LG  L+ MY K G L     VF  + E  I  WN +IS   
Sbjct: 169 GRRVR-SIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYS 227

Query: 223 NSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            SG YGE +++ F  M   G  P+ YT S ++     +  +++G+QV  L  K+GF S +
Sbjct: 228 GSGNYGE-SINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYN 286

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V+++ I  +    ++  + +LF++L   D    N MIS Y + G  +  +E+F  ML  
Sbjct: 287 TVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVF 346

Query: 342 DIRPTEFTLSCV-LSSIPIPPVEHGSQFHSMAIKSG-FDSNAVVASSLMEMYAKTGSIDS 399
            +     T+  V ++   I  +  G   HS +IK+   D      ++L++MY+K G ++S
Sbjct: 347 GVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNS 406

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           +  +F ++D++ +VSW +++ G  + G +   + +F+E+   G+ PD   + ++L AC  
Sbjct: 407 AIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAI 466

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G +  G +V   ++E   +         + D+  + G +  A D+ S M  +   S W 
Sbjct: 467 NGNLKSGKIVHDYIREN-NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVIS-WN 524

Query: 520 SIL 522
           +++
Sbjct: 525 TMI 527



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 36/259 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +++ C    +    K +H ++ +     ++++ N   D+Y++ G+  D   +F  + +
Sbjct: 458 TSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKK 517

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ ISWN                               +MI GY      + AL +F++M
Sbjct: 518 KDVISWN-------------------------------TMIGGYTKNSLPNEALTLFAEM 546

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +  +P G T + +L   +S      G++IHG  +R+G S    V  N+++DMY K G+
Sbjct: 547 QRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVT-NAVVDMYVKCGL 604

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  +   D++SW  +I+G    GYG  A++ F  MR +G  PDE +   ++ A
Sbjct: 605 LVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYA 664

Query: 256 CTKLRNLDKGKQVFALSVK 274
           C+    LD+G ++F +  K
Sbjct: 665 CSHSGLLDEGWKIFNIMKK 683


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/532 (35%), Positives = 301/532 (56%), Gaps = 6/532 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A ++FD +P+ +  SW++M++GYA+   S+ A ++F  M  +     S F  + +LS VS
Sbjct: 172 ARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 231

Query: 159 SAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G+Q+HG +++ GL L  V + NSL+ MY K G +  AF VF +  E + I+W+
Sbjct: 232 VPLGLLMGEQMHGLIVKDGL-LDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWS 290

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++I+G   +G  + A+  F  M  +G++P E+T   V+NA + L  L  GKQ   L VK+
Sbjct: 291 AMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKL 350

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           GF     V SA +D+++KC  + D+   F+QL   D  +   M+S + + G  E AL L+
Sbjct: 351 GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLY 410

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M +E I P++ T++  L +   I  +E G Q H+  +K G    A V S+L  MY+K 
Sbjct: 411 ARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKC 470

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G+++    +F ++  RD+++WN+I+ G +QNG     LD+FEE+  EG  PD IT   +L
Sbjct: 471 GNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINIL 530

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G VD+G   FS M ++YG+ P  +HYAC++D+L +AG L +A D   ++    G
Sbjct: 531 CACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHG 590

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             +W  +L A     D  +     ER+M+L       Y LL+  YA + +W  + RV+ +
Sbjct: 591 TCLWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHL 650

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           MR  G+NK  GCSW+ + +R++ F  GE QH   + I   LR L   M+DEG
Sbjct: 651 MRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEG 702



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 9/288 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+  +  A  VF+   E + ++W++MI+GYA  G +D A+ MFS+M   G  P+ FTF  
Sbjct: 267 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 326

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   S + +   GKQ HG M++ G  +  + + ++L+DMY K G +  A   F  + E+
Sbjct: 327 VLNASSDLGALAVGKQAHGLMVKLGFEV-QIYVKSALVDMYAKCGCIADAKEGFDQLYEV 385

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DI+ W +++SG   +G  E AL  +  M   G  P + TI+  + AC  +  L+ GKQ+ 
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              VK G    + V SA   ++SKC  LED + +F ++   D    N +IS + + G G 
Sbjct: 446 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 505

Query: 330 VALELFQLMLREDIRPTEFT---LSCVLSSIPIPPVEHGSQFHSMAIK 374
            AL+LF+ M  E   P   T   + C  S + +  V+ G ++ S+  K
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGL--VDRGWEYFSLMTK 551



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 207/433 (47%), Gaps = 9/433 (2%)

Query: 97  LDTALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           L  A  VFD+IP    DV SWNS+++  +     D      S +    V PS  +F+   
Sbjct: 65  LAAAFAVFDDIPPAARDVASWNSLLNPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAF 124

Query: 155 STVSSACHGKQI---HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  + A         H    +   ++SNV +  SL++MY KLG++  A  +F  M + + 
Sbjct: 125 TAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNS 184

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVINACTKLRNLDKGKQVFA 270
            SW+++++G       E A D F  M     S   E+  + V++A +    L  G+Q+  
Sbjct: 185 FSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHG 244

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L VK G L    V ++ + +++K   +  +  +FE     +    + MI+ Y + G  + 
Sbjct: 245 LIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADS 304

Query: 331 ALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+ +F  M      PTEFT   VL +S  +  +  G Q H + +K GF+    V S+L++
Sbjct: 305 AVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVD 364

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G I  + E F +L + D+V W  ++ G  QNG   E L ++  + +EG+ P + T
Sbjct: 365 MYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKST 424

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           +A+ L AC     ++ G  + + +  +YG+  G    + +  +  + G L   + +   +
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIV-KYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 510 PFQPGCSIWESIL 522
           P +   + W SI+
Sbjct: 484 PDRDVIA-WNSII 495



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 36/277 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K  HG + KLGF    Y+ +  +D+Y++ G   D  + FD++ + +              
Sbjct: 341 KQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVD-------------- 386

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            +V W +M+SG+   G  + AL ++++M  +G+ PS  T +  L
Sbjct: 387 -----------------IVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGL 429

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              + +++   GKQ+H  +++ GL L   V G++L  MY K G L     VF  + + D+
Sbjct: 430 RACAGIAALEPGKQLHTQIVKYGLGLGAPV-GSALSTMYSKCGNLEDGMSVFRRIPDRDV 488

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           I+WNS+ISG   +G G  ALD F  M+  G  PD  T   ++ AC+ +  +D+G + F+L
Sbjct: 489 IAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSL 548

Query: 272 SVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             K  G        +  +D+ S+   L+++    E +
Sbjct: 549 MTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K +H  + K G      +G+    +YS+ G  +D + +F  IP ++ I+W
Sbjct: 432 CAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAW 491

Query: 85  NICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + G  ++   + AL +F+E+      PD +++ +++   +  G  D   E FS M  
Sbjct: 492 NSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 551

Query: 141 Q-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLG 183
             G+ P    ++ ++  +S A   K+    I    I  G  L  +VLG
Sbjct: 552 DYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLG 599



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNR--LEDSVRLFEQLD--RWDYAVINVMIS 320
           G+ + A ++K G  S++ V ++ I+ +S   R  L  +  +F+ +     D A  N +++
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90

Query: 321 TYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIK-SGF 377
              R+   + AL  F+ ML    + P+  + +   ++             H++A K    
Sbjct: 91  PLSRHRPLD-ALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSA 149

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
            SN  V +SL+ MY K G +  +  +F  + +R+  SW+T++ G      + E  D+F  
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 209

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           +LEE  P ++    A                V SA+    G++ GE+ +  I+
Sbjct: 210 MLEE-CPSEKSEFVAT--------------AVLSAVSVPLGLLMGEQMHGLIV 247



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS--IDSSTEIF--VKLDKRDLVSWNTI 418
            HG   H+ A+KSG  S+A VA+SL+  Y+      + ++  +F  +    RD+ SWN++
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSL 88

Query: 419 MMGLTQNGRAAETLDVFEELL 439
           +  L+++ R  + L  F  +L
Sbjct: 89  LNPLSRH-RPLDALSRFRSML 108


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 321/604 (53%), Gaps = 36/604 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +  S    K +H    + G     +LG   +D+YS+ GT  D          
Sbjct: 55  STVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYD---------- 104

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                ALKVF +I  PDVV+W++MI+G    G+   A E+F  M
Sbjct: 105 ---------------------ALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLM 143

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +G RP+ FT S L+ST ++     +G+ IHG + + G    N+V  N LI MY K   
Sbjct: 144 RRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLV-SNPLIMMYMKSRC 202

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +     VF  M   D++SWN+L+SG ++S         FY M   G+ P+ +T   V+ +
Sbjct: 203 VEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRS 262

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ L + + GKQV A  +K     +  V +A +D+++K   LED+   F++L   D    
Sbjct: 263 CSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSW 322

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIK 374
            V+IS Y +    E A++ F+ M RE I+P E+TL SC+     +  +E+G Q H++A+K
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVK 382

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G   +  V S+L+++Y K G ++ +  IF  L  RD+VSWNTI+ G +Q+G+  + L+ 
Sbjct: 383 AGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEA 442

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +L EG+ PD  T   VL AC++ G V++G   F +M + YG+ P  EHYAC++D+L 
Sbjct: 443 FRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILG 502

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+  +       M   P   IWE++L A  ++G+V   E  A+++ +++      Y L
Sbjct: 503 RAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYIL 562

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A +GRW+ +  ++ +M   GI K  GCSW+ +  +++ F + +  H   ++IY  
Sbjct: 563 LSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAK 622

Query: 615 LRLL 618
           L  L
Sbjct: 623 LDKL 626



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 201/375 (53%), Gaps = 7/375 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL-- 154
           ++ A ++F  +PE + VSWN++++GYA  G     L++F KM+    + S FT S +L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 155 -STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +   S   GK +H   +RSG  +    LG SL+DMY K G +Y A  VF  +   D+++
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEF-LGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W+++I+G    G+G+ A + F+ MR  G  P+++T+S +++  T + +L  G+ +     
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K GF S+++V +  I ++ K   +ED  ++FE +   D    N ++S +           
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP--IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +F  ML E  +P  FT   VL S    + P E G Q H+  IK+  D +  V ++L++MY
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDP-EFGKQVHAHIIKNSSDDDDFVGTALVDMY 298

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK   ++ +   F +L  RD+ SW  I+ G  Q  +A + +  F ++  EG+ P+  TLA
Sbjct: 299 AKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLA 358

Query: 452 AVLLACNYGGFVDKG 466
           + L  C++   ++ G
Sbjct: 359 SCLSGCSHMATLENG 373



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 160/332 (48%), Gaps = 48/332 (14%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  CS L+D        +F K +H H+ K   +   ++G   +D+Y++    +D    FD
Sbjct: 260 LRSCSSLLDP-------EFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFD 312

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +  ++  SW + + G  ++D  + A+K                                
Sbjct: 313 RLVNRDIFSWTVIISGYAQTDQAEKAVKY------------------------------- 341

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +MQ +G++P+ +T +  LS  S      +G+Q+H   +++G    ++ +G++L+D+YG
Sbjct: 342 FRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAG-HFGDIFVGSALVDLYG 400

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G + +A  +F  +   DI+SWN++ISG    G GE AL+ F  M   G  PDE T   
Sbjct: 401 KCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIG 460

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRW 310
           V++AC+ +  +++GK+ F    K+  ++ SI   A  +D+  +  +  +     E+++  
Sbjct: 461 VLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLT 520

Query: 311 DYAVINVMI----STYGRYGFGE-VALELFQL 337
            Y++I   +      +G   FGE  A +LF++
Sbjct: 521 PYSLIWETVLGACKLHGNVDFGEKAAKKLFEM 552


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/595 (30%), Positives = 302/595 (50%), Gaps = 36/595 (6%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           +   +HG   K G     ++G+  LD+Y + G                            
Sbjct: 134 YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIG---------------------------- 165

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
               +  + KVFDE+P  + V+W ++I+G    GYS+  L  FS M    V    + ++I
Sbjct: 166 ---EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAI 222

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L   + +    HG+ IH   ++ G    N  + NSL  MY K G L Y    F  M  L
Sbjct: 223 ALKASADSGALNHGRSIHTQTLKKGFD-ENSFVANSLTTMYNKCGKLDYGLHTFRKMRTL 281

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SW ++++     G  +  L  F  MR S   P+EYT S VI+ C     L  G+Q+ 
Sbjct: 282 DVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLH 341

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           A  + VGF++   V ++ + L+SKC  L    ++F  +   D    + +I+ Y + G+GE
Sbjct: 342 AHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGE 401

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A E    M  E  +P EF L+ VLS    +  +E G Q H+  +  G +  ++V S+L+
Sbjct: 402 EAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALI 461

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYAK GSI  +++IF+   K D++SW  ++ G  ++G + E +++FE + + GL PD +
Sbjct: 462 IMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSV 521

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G VD G   F++M ++Y + P +EHY C+IDLLC+AG+L  A  +  +
Sbjct: 522 TFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRS 581

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP Q    +W ++LRA  I+GDV   +  A  ++ L       +  L   +A +G+W+  
Sbjct: 582 MPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEA 641

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
             ++ +M+  G+ K  G S + +K+ ++ F +G+  H  G+ IY +L  L   ME
Sbjct: 642 ANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEELASGME 696



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 209/384 (54%), Gaps = 6/384 (1%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPS 146
           L+ L+K+++L  A  +FD++P+ D VSW ++ISGY +   S  AL +FSKM+LQ  +R  
Sbjct: 56  LKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID 115

Query: 147 GFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            F  S+ L T     +  +G  +HG  +++GL +++V +G++L+DMY K+G +  +  VF
Sbjct: 116 PFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGL-VNSVFVGSALLDMYMKIGEIGRSCKVF 174

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   + ++W ++I+G   +GY E  L  F  M  S    D Y  +I + A      L+
Sbjct: 175 DEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALN 234

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+ +   ++K GF  NS V ++   +++KC +L+  +  F ++   D      +++ Y 
Sbjct: 235 HGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYI 294

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
           + G  +  L+ F+ M   ++ P E+T S V+S       ++ G Q H+  +  GF +   
Sbjct: 295 QMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALS 354

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           VA+S+M +Y+K G + S +++F  +  RD+++W+TI+   +Q G   E  +    +  EG
Sbjct: 355 VANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEG 414

Query: 443 LPPDRITLAAVLLACNYGGFVDKG 466
             P+   LA+VL  C     +++G
Sbjct: 415 PKPNEFALASVLSVCGSMAILEQG 438



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 211/442 (47%), Gaps = 54/442 (12%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + +  ++IH    K GF+ ++++ N    +Y++ G                         
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCG------------------------- 266

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  LD  L  F ++   DVVSW ++++ Y   G  D  L+ F +M+   V P+ +T
Sbjct: 267 ------KLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS ++S  ++      G+Q+H  ++  G  ++ + + NS++ +Y K G L     VF +M
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGF-VNALSVANSIMTLYSKCGELASVSKVFCSM 379

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +  DII+W+++I+     GYGE A +    MR  G  P+E+ ++ V++ C  +  L++GK
Sbjct: 380 KFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGK 439

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGR 324
           Q+ A  + VG    S+V SA I +++KC  + ++ ++F  +D W   +I+   MIS Y  
Sbjct: 440 QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF--MDSWKDDIISWTAMISGYAE 497

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAV 382
           +G  + A+ELF+ + +  +RP   T   VL++      V+ G   F+SM+       +  
Sbjct: 498 HGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKE 557

Query: 383 VASSLMEMYAKTGSI-DSSTEIFVKLDKRDLVSWNTIMMGLTQNG-------RAAETLDV 434
               ++++  + G + D+ T I     + D V W+T++     +G        AAE L  
Sbjct: 558 HYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLK- 616

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
               L+       ITLA +  A
Sbjct: 617 ----LDPNCAGTHITLANIFAA 634



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 7/371 (1%)

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR-YSG 241
            N+ + +  K   L  A  +F  + + D +SW ++ISG  NS     AL  F  MR  S 
Sbjct: 52  ANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSE 111

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D + +S+ +  C    N   G  +   SVK G +++  V SA +D++ K   +  S 
Sbjct: 112 LRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSC 171

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIP 360
           ++F+++   +      +I+   R G+ E  L  F  M R  +    +  +  L +S    
Sbjct: 172 KVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSG 231

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            + HG   H+  +K GFD N+ VA+SL  MY K G +D     F K+   D+VSW TI+ 
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVT 291

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
              Q G+    L  F+ +    + P+  T +AV+  C     +  G  + + +    G +
Sbjct: 292 AYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVL-CVGFV 350

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                   I+ L  + G+L     +  +M F+   + W +I+   A Y  V   E   E 
Sbjct: 351 NALSVANSIMTLYSKCGELASVSKVFCSMKFRDIIT-WSTII---AAYSQVGYGEEAFEY 406

Query: 541 MMDLQLPSPLP 551
           +  ++   P P
Sbjct: 407 LSRMRSEGPKP 417


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/613 (29%), Positives = 332/613 (54%), Gaps = 37/613 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   +S +  + +H  + K G   + YL N  L +Y++ G+  D            
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTD------------ 100

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A +VFD I + ++VSW +MI  + +   +  A + +  M+L
Sbjct: 101 -------------------ARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKL 141

Query: 141 QGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G +P   TF  LL+  ++      G+++H  ++ +GL L   V G SL+ MY K G + 
Sbjct: 142 AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV-GTSLVGMYAKCGDIS 200

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  + E ++++W  LI+G    G  ++AL+   +M+ +  +P++ T + ++  CT
Sbjct: 201 KARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT 260

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L+ GK+V    ++ G+     V+++ I ++ KC  LE++ +LF  L   D      
Sbjct: 261 TPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTA 320

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSG 376
           M++ Y + GF + A+ LF+ M ++ I+P + T + VL+S   P  ++ G + H   + +G
Sbjct: 321 MVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAG 380

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL-TQNGRAAETLDVF 435
           ++ +  + S+L+ MYAK GS+D ++ +F ++ +R++V+W  I+ G   Q+GR  E L+ F
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYF 440

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           +++ ++G+ PD++T  +VL AC + G V++G   F +M  +YG+ P  EHY+C +DLL +
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 500

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG L +A ++  +MPF PG S+W ++L A  ++ DV+  E  AE ++ L       Y  L
Sbjct: 501 AGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVAL 560

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  GR+E   +V++VM K  + K  G SWI +  +++ F+  +  H   ++IY+ L
Sbjct: 561 SSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVEL 620

Query: 616 RLLTWEMEDEGCV 628
             LT ++++ G V
Sbjct: 621 GKLTEQIKEMGYV 633



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 154/301 (51%), Gaps = 38/301 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V    +++ S ++  C +  + +  K +H ++ + G+    ++ N  + +Y + G
Sbjct: 240 MQQAEVAPNKITFAS-ILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCG 298

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             ++  +LF ++P ++ ++                               W +M++GYA 
Sbjct: 299 GLEEARKLFSDLPHRDVVT-------------------------------WTAMVTGYAQ 327

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G+ D A+ +F +MQ QG++P   TF+ +L++ SS      GK+IH  ++ +G +L +V 
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL-DVY 386

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYS 240
           L ++L+ MY K G +  A  VF  M E ++++W ++I+G C   G    AL+ F  M+  
Sbjct: 387 LQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQ 446

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           G  PD+ T + V++ACT +  +++G++ F ++ +  G        S  +DL  +   LE+
Sbjct: 447 GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 506

Query: 300 S 300
           +
Sbjct: 507 A 507


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/595 (30%), Positives = 302/595 (50%), Gaps = 36/595 (6%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           +   +HG   K G     ++G+  LD+Y + G                            
Sbjct: 134 YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIG---------------------------- 165

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
               +  + KVFDE+P  + V+W ++I+G    GYS+  L  FS M    V    + ++I
Sbjct: 166 ---EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAI 222

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L   + +    HG+ IH   ++ G    N  + NSL  MY K G L Y    F  M  L
Sbjct: 223 ALKASADSGALNHGRSIHTQTLKKGFD-ENSFVANSLTTMYNKCGKLDYGLHTFRKMRTL 281

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SW ++++     G  +  L  F  MR S   P+EYT S VI+ C     L  G+Q+ 
Sbjct: 282 DVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLH 341

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           A  + VGF++   V ++ + L+SKC  L    ++F  +   D    + +I+ Y + G+GE
Sbjct: 342 AHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGE 401

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A E    M  E  +P EF L+ VLS    +  +E G Q H+  +  G +  ++V S+L+
Sbjct: 402 EAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALI 461

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYAK GSI  +++IF+   K D++SW  ++ G  ++G + E +++FE + + GL PD +
Sbjct: 462 IMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSV 521

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G VD G   F++M ++Y + P +EHY C+IDLLC+AG+L  A  +  +
Sbjct: 522 TFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRS 581

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP Q    +W ++LRA  I+GDV   +  A  ++ L       +  L   +A +G+W+  
Sbjct: 582 MPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEA 641

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
             ++ +M+  G+ K  G S + +K+ ++ F +G+  H  G+ IY +L  L   ME
Sbjct: 642 ANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNILEELASGME 696



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 208/384 (54%), Gaps = 6/384 (1%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPS 146
           L+ L+K+++L  A  +FD++P+ D VSW ++ISGY +   S  AL +FSKM+LQ  +R  
Sbjct: 56  LKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID 115

Query: 147 GFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            F  S+ L T     +  +G  +HG  ++ GL +++V +G++L+DMY K+G +  +  VF
Sbjct: 116 PFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGL-VNSVFVGSALLDMYMKIGEIGRSCKVF 174

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   + ++W ++I+G   +GY E  L  F  M  S    D Y  +I + A      L+
Sbjct: 175 DEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALN 234

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+ +   ++K GF  NS V ++   +++KC +L+  +  F ++   D      +++ Y 
Sbjct: 235 HGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYI 294

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
           + G  +  L+ F+ M   ++ P E+T S V+S       ++ G Q H+  +  GF +   
Sbjct: 295 QMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALS 354

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           VA+S+M +Y+K G + S +++F  +  RD+++W+TI+   +Q G   E  +    +  EG
Sbjct: 355 VANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEG 414

Query: 443 LPPDRITLAAVLLACNYGGFVDKG 466
             P+   LA+VL  C     +++G
Sbjct: 415 PKPNEFALASVLSVCGSMAILEQG 438



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 211/442 (47%), Gaps = 54/442 (12%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + +  ++IH    K GF+ ++++ N    +Y++ G                         
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCG------------------------- 266

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  LD  L  F ++   DVVSW ++++ Y   G  D  L+ F +M+   V P+ +T
Sbjct: 267 ------KLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYT 320

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS ++S  ++      G+Q+H  ++  G  ++ + + NS++ +Y K G L     VF +M
Sbjct: 321 FSAVISCCANFARLKWGEQLHAHVLCVGF-VNALSVANSIMTLYSKCGELASVSKVFCSM 379

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +  DII+W+++I+     GYGE A +    MR  G  P+E+ ++ V++ C  +  L++GK
Sbjct: 380 KFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGK 439

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGR 324
           Q+ A  + VG    S+V SA I +++KC  + ++ ++F  +D W   +I+   MIS Y  
Sbjct: 440 QLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIF--MDSWKDDIISWTAMISGYAE 497

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAV 382
           +G  + A+ELF+ + +  +RP   T   VL++      V+ G   F+SM+       +  
Sbjct: 498 HGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKE 557

Query: 383 VASSLMEMYAKTGSI-DSSTEIFVKLDKRDLVSWNTIMMGLTQNG-------RAAETLDV 434
               ++++  + G + D+ T I     + D V W+T++     +G        AAE L  
Sbjct: 558 HYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLK- 616

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
               L+       ITLA +  A
Sbjct: 617 ----LDPNCAGTHITLANIFAA 634



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 7/371 (1%)

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR-YSG 241
            N+ + +  K   L  A  +F  + + D +SW ++ISG  NS     AL  F  MR  S 
Sbjct: 52  ANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSE 111

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D + +S+ +  C    N   G  +   SVK G +++  V SA +D++ K   +  S 
Sbjct: 112 LRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSC 171

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIP 360
           ++F+++   +      +I+   R G+ E  L  F  M R  +    +  +  L +S    
Sbjct: 172 KVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSG 231

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            + HG   H+  +K GFD N+ VA+SL  MY K G +D     F K+   D+VSW TI+ 
Sbjct: 232 ALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVT 291

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
              Q G+    L  F+ +    + P+  T +AV+  C     +  G  + + +    G +
Sbjct: 292 AYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVL-CVGFV 350

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                   I+ L  + G+L     +  +M F+   + W +I+   A Y  V   E   E 
Sbjct: 351 NALSVANSIMTLYSKCGELASVSKVFCSMKFRDIIT-WSTII---AAYSQVGYGEEAFEY 406

Query: 541 MMDLQLPSPLP 551
           +  ++   P P
Sbjct: 407 LSRMRSEGPKP 417


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 187/595 (31%), Positives = 317/595 (53%), Gaps = 37/595 (6%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
            +HG+L K GF A   + N  +  Y+                               KS+
Sbjct: 5   VVHGYLVKYGFGAQCAVCNALISFYA-------------------------------KSN 33

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILL 154
            ++ AL VFDE+P+ D++SWNS+I G AS G  D A+E+F +M L+G      T  S++ 
Sbjct: 34  RIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMP 93

Query: 155 STVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           + V S     G  +HG  +R+GL +S   LGN+L+DMY           +F NME+ +++
Sbjct: 94  ACVQSHYSFIGGVVHGYSVRTGL-ISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVV 152

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW ++I+    +G+ +     F  M   G  PD + I+  ++A     +L  GK V   +
Sbjct: 153 SWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYA 212

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           ++ G      V +A ++++ KC  +E++  +F+ + + D    N +I  Y R      A 
Sbjct: 213 IRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAF 272

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  ML + +RP   T++C+L ++  +  +E G + H+ A++ G+  +  VA++L++MY
Sbjct: 273 TLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMY 331

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G++  +  +F  L  ++L+SW  ++ G   +GR  + + +FE++   G+ PD  + +
Sbjct: 332 VKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFS 391

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           A+L AC++ G  D+G   F+AM+ E+ + P  +HYAC++DLLC  G L +A +   TMP 
Sbjct: 392 AILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPI 451

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P  SIW S+LR   I+ +VKL E VAE + +L+  +   Y LL   YA   RWEA+ ++
Sbjct: 452 EPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKL 511

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           K  +   G+ + TGCSWI ++ + + F A    H  G +I   L  +   M++EG
Sbjct: 512 KNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEG 566



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 36/244 (14%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           +S    K++HG+  + G      + N  +++Y + G  ++   +FD + +K+ ISWN   
Sbjct: 200 ESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWN--- 256

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                                       ++I GY+    ++ A  +F++M LQ +RP+  
Sbjct: 257 ----------------------------TLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAV 287

Query: 149 TFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           T + +L   +++SS   G+++H   +R G    N V  N+L+DMY K G L  A  +F  
Sbjct: 288 TMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV-ANALVDMYVKCGALLLARRLFDM 346

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           +   ++ISW  +I+G    G G  A+  F  M+ SG  PD  + S ++ AC+     D+G
Sbjct: 347 LTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEG 406

Query: 266 KQVF 269
            + F
Sbjct: 407 WRFF 410



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G  V    VK GF +   V +A I  ++K NR+ED++ +F+++ + D    N +I     
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSN 380
            G  + A+ELF  M  E     E   + +LS +P     H    G   H  ++++G  S 
Sbjct: 63  NGLYDKAVELFVRMWLEG---QELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISE 119

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             + ++L++MY+      S+ +IF  ++++++VSW  ++   T+ G   +   +F+E+  
Sbjct: 120 TSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGL 179

Query: 441 EGLPPDRITLAAVLLA 456
           EG+ PD   + + L A
Sbjct: 180 EGIRPDVFAITSALDA 195



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 35/199 (17%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S +  + +H +  + G+    ++ N  +D+Y + G      +LFD +  KN ISW I
Sbjct: 298 SLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTI 357

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                                          MI+GY   G    A+ +F +M+  G++P 
Sbjct: 358 -------------------------------MIAGYGMHGRGRDAIALFEQMKGSGIQPD 386

Query: 147 GFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             +FS +L   S +     G +   +M         +     ++D+    G L  A+   
Sbjct: 387 AGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFI 446

Query: 204 LNME-ELDIISWNSLISGC 221
             M  E D   W SL+ GC
Sbjct: 447 ETMPIEPDSSIWVSLLRGC 465


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 322/602 (53%), Gaps = 9/602 (1%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K++H    K    + TYL N  ++LYS+ G        FD   + N  S+N+ ++   K 
Sbjct: 28  KSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKD 87

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             +  A ++FDE P+PD VS+N++ISGYA    +  A+ +F +M+  G    GFT S L+
Sbjct: 88  SKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLI 147

Query: 155 STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-DII 212
           +         KQ+H   +  G   S   + N+ +  Y K G+L  A  VF  M+ L D +
Sbjct: 148 AACCDRVDLIKQLHCFAVSGGFD-SYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEV 206

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWNS+I        G  AL  +  M + G+  D +T++ V+NA T L +L  G+Q     
Sbjct: 207 SWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKL 266

Query: 273 VKVGFLSNSIVLSATIDLFSKC---NRLEDSVRLFEQLDRWDYAVINVMISTYG-RYGFG 328
           +K GF  NS V S  ID +SKC   + + DS ++F+++   D  + N MIS Y       
Sbjct: 267 IKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHS 326

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASS 386
           E A++ F+ M R   RP + +  CV S+   +     G Q H +AIKS   SN + V ++
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNA 386

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ +Y K+G++  +  +F ++ + + VS+N ++ G  Q+G   E L +++ +L+ G+ P+
Sbjct: 387 LISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPN 446

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT  A+L AC + G VD+G   F+ MKE + + P  EHY+C+IDLL +AG+L +A    
Sbjct: 447 NITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFI 506

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP++PG   W ++L A   + ++ L E  A+ +M +Q  +  PY +L   YA  G+WE
Sbjct: 507 DAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWE 566

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  V+K MR   I K  GCSWI +K + + F A +  H   +++   L  +  +M+  G
Sbjct: 567 EMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVG 626

Query: 627 CV 628
            V
Sbjct: 627 YV 628



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 197/426 (46%), Gaps = 52/426 (12%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D  K +H      GF++++ + N  +  YS+ G   + + +F              + GL
Sbjct: 155 DLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVF------------YGMDGL 202

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                              D VSWNSMI  Y        AL ++ +M  +G +   FT +
Sbjct: 203 ------------------RDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLA 244

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGVFLN 205
            +L+ ++S  H   G+Q HG +I++G    N  +G+ LID Y K G    +  +  VF  
Sbjct: 245 SVLNALTSLDHLIGGRQFHGKLIKAGFH-QNSHVGSGLIDFYSKCGGRDGMSDSEKVFQE 303

Query: 206 MEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           +   D++ WN++ISG   N  + E A+  F  M+  G+ PD+ +   V +AC+ L +  +
Sbjct: 304 ILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQ 363

Query: 265 GKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           GKQ+  L++K    SN I V +A I L+ K   L D+ R+F+++   +    N MI  Y 
Sbjct: 364 GKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYA 423

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNA 381
           ++G G  AL L+Q ML   I P   T   +LS+      V+ G + F++M      +  A
Sbjct: 424 QHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEA 483

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM--------MGLTQNGRAAETL 432
              S ++++  + G ++ +      +  K   V+W  ++        M L +  RAA+ L
Sbjct: 484 EHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAE--RAAKEL 541

Query: 433 DVFEEL 438
            V + L
Sbjct: 542 MVMQPL 547


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 331/606 (54%), Gaps = 39/606 (6%)

Query: 30  SFDFAK---TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S D A    T+H  ++KLG +A  ++G   +D YS                         
Sbjct: 148 SMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYS------------------------- 182

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
            +RG     N+D A  VFD+I   D+VSW  M++ YA   + + +L++F++M++ G +P+
Sbjct: 183 -VRG-----NVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPN 236

Query: 147 GFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT S  L +   + +   GK +HG  ++ G    ++ +G +L+++Y K G +  A  +F
Sbjct: 237 NFTISGALKSCLGLEAFNVGKSVHGCALK-GCYDHDLFVGIALLELYAKSGEIIDAQRLF 295

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M + D+I W+ +I+    S   + ALD F  MR +   P+ +T + V+ AC    +LD
Sbjct: 296 EEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLD 355

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GKQ+ +  +K G  SN  V +A +D+++KC  +E+S++LFE+L   +    N +I  Y 
Sbjct: 356 LGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYV 415

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
           + G GE A+ LF  ML  D++PTE T S VL +S  +  +E G Q HS+ IK+ ++ + V
Sbjct: 416 QLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTV 475

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           VA+SL++MYAK G I+ +   F K++KRD VSWN ++ G + +G + E L++F+ +    
Sbjct: 476 VANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTD 535

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
             P+++T   VL AC+  G + KG   F +M ++Y + P  EHY C++ LL + G+  +A
Sbjct: 536 CKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEA 595

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
           + +   + +QP   +W ++L A  I+  V L    A+ +++++      + LL+  YA  
Sbjct: 596 MKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATA 655

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           GRW+ +  V+K M+K  + K  G SW+  +  ++ F+ G+  H   + I  +L  L  + 
Sbjct: 656 GRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKT 715

Query: 623 EDEGCV 628
            D G V
Sbjct: 716 RDAGYV 721



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 210/391 (53%), Gaps = 5/391 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           NI L   ++S++L  A K+FDE+P+ + +S+ ++  GY+       AL    ++  +G  
Sbjct: 74  NILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHE 133

Query: 145 PSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            + F F+ LL  + S   A     +H  + + G   ++  +G +LID Y   G +  A  
Sbjct: 134 VNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHH-ADAFVGTALIDAYSVRGNVDVARH 192

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++   D++SW  +++    + + E +L  F  MR  GY P+ +TIS  + +C  L  
Sbjct: 193 VFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEA 252

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
            + GK V   ++K  +  +  V  A ++L++K   + D+ RLFE++ + D    ++MI+ 
Sbjct: 253 FNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIAR 312

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSN 380
           Y +    + AL+LF  M +  + P  FT + VL +      ++ G Q HS  +K G +SN
Sbjct: 313 YAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSN 372

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V++++M++YAK G I++S ++F +L  R+ V+WNTI++G  Q G     +++F  +LE
Sbjct: 373 VFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLE 432

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
             + P  +T ++VL A      ++ G+ + S
Sbjct: 433 HDMQPTEVTYSSVLRASASLAALEPGLQIHS 463



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 194/385 (50%), Gaps = 37/385 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CL  ++F+  K++HG   K  ++   ++G   L+LY++ G   D  +LF+E+P+ + I W
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           ++                               MI+ YA    S  AL++F +M+   V 
Sbjct: 307 SL-------------------------------MIARYAQSDRSKEALDLFLRMRQTSVV 335

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ FTF+ +L   +S+     GKQIH  +++ GL+ SNV + N+++D+Y K G +  +  
Sbjct: 336 PNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLN-SNVFVSNAIMDVYAKCGEIENSMK 394

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  + + + ++WN++I G    G GE A++ F  M      P E T S V+ A   L  
Sbjct: 395 LFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAA 454

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ G Q+ +L++K  +  +++V ++ ID+++KC R+ D+   F+++++ D    N MI  
Sbjct: 455 LEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICG 514

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNA 381
           Y  +G    AL LF +M   D +P + T   VLS+     + +  Q H  ++   +D   
Sbjct: 515 YSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKP 574

Query: 382 VVA--SSLMEMYAKTGSIDSSTEIF 404
            +   + ++ +  + G  D + ++ 
Sbjct: 575 CIEHYTCMVWLLGRLGRFDEAMKLI 599



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 35/254 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  S D  K IH  + K G N++ ++ N  +D+Y++ G  ++ ++LF+E+P 
Sbjct: 342 ASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPD 401

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N ++WN                               ++I GY   G  + A+ +F+ M
Sbjct: 402 RNDVTWN-------------------------------TIIVGYVQLGDGERAMNLFTHM 430

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               ++P+  T+S +L   +S      G QIH   I++  +  + V+ NSLIDMY K G 
Sbjct: 431 LEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN-KDTVVANSLIDMYAKCGR 489

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  M + D +SWN++I G    G    AL+ F  M+++   P++ T   V++A
Sbjct: 490 INDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSA 549

Query: 256 CTKLRNLDKGKQVF 269
           C+    L KG+  F
Sbjct: 550 CSNAGLLYKGQAHF 563



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 89/194 (45%), Gaps = 1/194 (0%)

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK +    +K G   +    +  ++ + + N L+D+ +LF+++ + +      +   Y R
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGS-QFHSMAIKSGFDSNAVV 383
                 AL     + +E      F  + +L  +    + H     H+   K G  ++A V
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L++ Y+  G++D +  +F  +  +D+VSW  ++    +N    E+L +F ++   G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 444 PPDRITLAAVLLAC 457
            P+  T++  L +C
Sbjct: 234 KPNNFTISGALKSC 247


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 333/626 (53%), Gaps = 47/626 (7%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY   L+  C+       A+ IHGH+ K GF+   ++    +++YS+ G           
Sbjct: 65  SYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGV---------- 114

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                +++A KVFD +P  +V +W ++++GY    +   AL++F
Sbjct: 115 ---------------------MESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF 153

Query: 136 SKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KM   G  PS +T  I+L   S++ S   GKQ+H  +I+  +   +  +GNSL   Y K
Sbjct: 154 IKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDF-DTSIGNSLSSFYSK 212

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              L +A   F  ++E D+ISW S+IS C ++G    +L  F  M   G  P+EYT++ V
Sbjct: 213 FRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSV 272

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC  +  LD G Q+ +LS+K+G+ S+ ++ ++ + L+ KC  L ++ +LFE ++  + 
Sbjct: 273 LSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNL 332

Query: 313 AVINVMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
              N MI+ + +           +  G  AL +FQ + R  ++P  FT S VLS    + 
Sbjct: 333 VTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLV 392

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G Q H   IKSG  ++ VV ++L+ MY K GSID +++ F+++  R ++SW +++ 
Sbjct: 393 ALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMIT 452

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  ++G + + L +FE++   G+ P+++T   VL AC++ G  D+ +  F  M+++Y + 
Sbjct: 453 GFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIK 512

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  +H+AC+ID+  + G++ +A D+   M F+P  +IW  ++     +G   L    AE+
Sbjct: 513 PVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQ 572

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++ L+      Y  L   +   GRW+ + +V+K+M++  + K+   SWI IK ++Y+F  
Sbjct: 573 LLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKP 632

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  H    ++Y +L  +  E++  G
Sbjct: 633 NDKSHCQSLEMYKLLETVLNEVKALG 658



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 217/420 (51%), Gaps = 20/420 (4%)

Query: 146 SGFTFSILLSTVSS--ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           S + F +L   +    A   + IHG ++++G    ++ +   L+++Y K GV+  A  VF
Sbjct: 64  SSYYFPLLQECIDRNLATEARMIHGHIVKTGFH-EDLFVMTFLVNVYSKCGVMESAHKVF 122

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            N+   ++ +W +L++G   + +  LAL  F  M  +G  P  YT+ IV+NAC+ L++++
Sbjct: 123 DNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIE 182

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GKQV A  +K     ++ + ++    +SK  RLE +++ F+ +   D      +IS+  
Sbjct: 183 FGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCC 242

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAV 382
             G    +L  F  ML + ++P E+TL+ VLS+  +   ++ G+Q HS++IK G+ S+ +
Sbjct: 243 DNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSIL 302

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI------MMGLTQNGRAAE-----T 431
           + +S+M +Y K G +  + ++F  ++  +LV+WN +      MM L ++  AA       
Sbjct: 303 IKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTA 362

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L +F++L   G+ PD  T ++VL  C+    +++G  +   + +  GV+        ++ 
Sbjct: 363 LAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKS-GVLADVVVGTALVS 421

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +  + G + KA      MP +   S W S++   A +G   L++   +   D++L    P
Sbjct: 422 MYNKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHG---LSQQALQLFEDMRLVGIKP 477



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 40/230 (17%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C +  + +  + IHG + K G  A   +G   + +Y++ G+ D   +
Sbjct: 375 KPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASK 434

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+P +  ISW                                SMI+G+A  G S  A
Sbjct: 435 AFLEMPSRTMISW-------------------------------TSMITGFARHGLSQQA 463

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI--HGSMIRSGLSLSNVVLGNS-LID 188
           L++F  M+L G++P+  TF  +LS  S A    +   +  +++   ++  V+   + LID
Sbjct: 464 LQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLID 523

Query: 189 MYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSGYGELALDQFYS 236
           MY +LG +  AF V   +N E  + I W+ LI+GC + G  +L    FY+
Sbjct: 524 MYLRLGRVEEAFDVVHKMNFEPNETI-WSMLIAGCRSHGKSDLG---FYA 569


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 333/626 (53%), Gaps = 47/626 (7%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY   L+  C+       A+ IHGH+ K GF+   ++    +++YS+ G           
Sbjct: 59  SYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGV---------- 108

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                +++A KVFD +P  +V +W ++++GY    +   AL++F
Sbjct: 109 ---------------------MESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF 147

Query: 136 SKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KM   G  PS +T  I+L   S++ S   GKQ+H  +I+  +   +  +GNSL   Y K
Sbjct: 148 IKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDF-DTSIGNSLSSFYSK 206

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              L +A   F  ++E D+ISW S+IS C ++G    +L  F  M   G  P+EYT++ V
Sbjct: 207 FRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSV 266

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC  +  LD G Q+ +LS+K+G+ S+ ++ ++ + L+ KC  L ++ +LFE ++  + 
Sbjct: 267 LSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNL 326

Query: 313 AVINVMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
              N MI+ + +           +  G  AL +FQ + R  ++P  FT S VLS    + 
Sbjct: 327 VTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLV 386

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G Q H   IKSG  ++ VV ++L+ MY K GSID +++ F+++  R ++SW +++ 
Sbjct: 387 ALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMIT 446

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  ++G + + L +FE++   G+ P+++T   VL AC++ G  D+ +  F  M+++Y + 
Sbjct: 447 GFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIK 506

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  +H+AC+ID+  + G++ +A D+   M F+P  +IW  ++     +G   L    AE+
Sbjct: 507 PVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQ 566

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++ L+      Y  L   +   GRW+ + +V+K+M++  + K+   SWI IK ++Y+F  
Sbjct: 567 LLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKP 626

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  H    ++Y +L  +  E++  G
Sbjct: 627 NDKSHCQSLEMYKLLETVLNEVKALG 652



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 217/420 (51%), Gaps = 20/420 (4%)

Query: 146 SGFTFSILLSTVSS--ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           S + F +L   +    A   + IHG ++++G    ++ +   L+++Y K GV+  A  VF
Sbjct: 58  SSYYFPLLQECIDRNLATEARMIHGHIVKTGFH-EDLFVMTFLVNVYSKCGVMESAHKVF 116

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            N+   ++ +W +L++G   + +  LAL  F  M  +G  P  YT+ IV+NAC+ L++++
Sbjct: 117 DNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIE 176

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GKQV A  +K     ++ + ++    +SK  RLE +++ F+ +   D      +IS+  
Sbjct: 177 FGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCC 236

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAV 382
             G    +L  F  ML + ++P E+TL+ VLS+  +   ++ G+Q HS++IK G+ S+ +
Sbjct: 237 DNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSIL 296

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI------MMGLTQNGRAAE-----T 431
           + +S+M +Y K G +  + ++F  ++  +LV+WN +      MM L ++  AA       
Sbjct: 297 IKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTA 356

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L +F++L   G+ PD  T ++VL  C+    +++G  +   + +  GV+        ++ 
Sbjct: 357 LAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKS-GVLADVVVGTALVS 415

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +  + G + KA      MP +   S W S++   A +G   L++   +   D++L    P
Sbjct: 416 MYNKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHG---LSQQALQLFEDMRLVGIKP 471



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 40/230 (17%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C +  + +  + IHG + K G  A   +G   + +Y++ G+ D   +
Sbjct: 369 KPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASK 428

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+P +  ISW                                SMI+G+A  G S  A
Sbjct: 429 AFLEMPSRTMISW-------------------------------TSMITGFARHGLSQQA 457

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI--HGSMIRSGLSLSNVVLGNS-LID 188
           L++F  M+L G++P+  TF  +LS  S A    +   +  +++   ++  V+   + LID
Sbjct: 458 LQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLID 517

Query: 189 MYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSGYGELALDQFYS 236
           MY +LG +  AF V   +N E  + I W+ LI+GC + G  +L    FY+
Sbjct: 518 MYLRLGRVEEAFDVVHKMNFEPNETI-WSMLIAGCRSHGKSDLG---FYA 563


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/636 (29%), Positives = 328/636 (51%), Gaps = 36/636 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S      A  +HG   K GF  +  + N  +D+Y +        Q+F  I + +  SW
Sbjct: 3   CSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSW 62

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  K   +  A+  F ++PE D VSWN++IS ++  G    +L  F +M +QG +
Sbjct: 63  NCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQ 122

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T++ +LS  ++      GK +H  ++R    L +V++GN L+DMY K G++  +  
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFL-DVLVGNGLVDMYAKCGLIDASKR 181

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  + E ++++W SLISG  + G  E   D FY MR      D + ++ ++  C    N
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETN 241

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +  G+Q+   +VK G  S+  V +AT+ +++KC   E +   FE +   D      MI++
Sbjct: 242 ISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITS 301

Query: 322 YGRYG-------------------------------FGEVALELFQLMLREDIRPTEFTL 350
           +   G                               F E  L+L+ LMLR+++RP   T 
Sbjct: 302 FSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITF 361

Query: 351 SCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
             ++ +     +   G+Q  S A+K G  S+  V +S + +Y++ G I+ +  +F  + +
Sbjct: 362 VTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQE 421

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           ++L+SWN+IM G  QNG   + +++F+ +L  G  PD IT  A+L  C++ G V +    
Sbjct: 422 KNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYH 481

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           F++M +++G+    EH+ C++DL  +AG L  A+D+   MPF+P  SIW ++L A  I+ 
Sbjct: 482 FNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIHH 541

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           D ++ E   + +++L   +   Y LL   Y+  GR E +  V++VM++  + K  GCSWI
Sbjct: 542 DTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKDPGCSWI 601

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            + NR++ F A +  H   + IY  L  +  +++D+
Sbjct: 602 EVCNRVHVFTANDTSHPQVKDIYKALEDIVKKIKDD 637



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 174/398 (43%), Gaps = 67/398 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S++Y S ++  C +   F + K +H  + ++       +GN  +D+Y++ G  D   ++F
Sbjct: 125 SMTYAS-VLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVF 183

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           + + + N                               VV+W S+ISG A  G  +   +
Sbjct: 184 NTLREHN-------------------------------VVTWTSLISGIAHFGSQEEVYD 212

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F +M+   V    F  + +L       +   G+Q+HG  +++G++ S+V +GN+ + MY
Sbjct: 213 IFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMN-SSVPVGNATLSMY 271

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM------------- 237
            K G    A   F  M   D+ISW ++I+   +SG  E A D F  M             
Sbjct: 272 AKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLG 331

Query: 238 RYSGYS------------------PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
            Y   S                  PD  T   +I AC++L     G Q+ + +VKVG  S
Sbjct: 332 AYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGS 391

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V+++ I L+S+C R+E++  LF+ +   +    N ++  Y + G G   +E+FQ ML
Sbjct: 392 DVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNML 451

Query: 340 REDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF 377
               +P   T   +LS      +   +++H  ++   F
Sbjct: 452 MAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDF 489



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 160/382 (41%), Gaps = 55/382 (14%)

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN----------RLED----- 299
           AC+ +  +    Q+  LS K GF +N ++ ++ ID++ KC+          R+E      
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 300 ----------------SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
                           ++  F Q+   D    N +IS +  +G    +L  F  M  +  
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +P   T + VLS+   I   + G   H+  ++     + +V + L++MYAK G ID+S  
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKR 181

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  L + ++V+W +++ G+   G   E  D+F ++ ++ +  D   LA +L  C     
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETN 241

Query: 463 VD-----KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           +       G  V + M     V          + +  + G   KA     TM      S 
Sbjct: 242 ISIGEQLHGFTVKTGMNSSVPVGNA------TLSMYAKCGDFEKASLAFETMAAHDVIS- 294

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA-----IVRVK 572
           W +++ + +  G+V+   +   RM +  + S   ++ +  AY     WE      I+ ++
Sbjct: 295 WTTMITSFSHSGNVERARDYFNRMPERNVIS---WNAMLGAYCQNSFWEEGLKLYILMLR 351

Query: 573 KVMRKNGINKVT---GCSWIGI 591
           + +R + I  VT    CS + I
Sbjct: 352 QEVRPDWITFVTMIGACSELAI 373


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 211/686 (30%), Positives = 344/686 (50%), Gaps = 90/686 (13%)

Query: 25  CLSFK--SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCI 82
           CL  +  S   A+ +HG++   GF    ++ NR +D+Y +    +   QLFDEI + + I
Sbjct: 22  CLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKI 81

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYA--SCGYSDYALEMFSKM 138
           +    + G   S ++  A  VF++ P    D V +N+MI+G++  + GYS  A+ +F KM
Sbjct: 82  ARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYS--AINLFCKM 139

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGK----QIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           + +G +P  FTF+ +L+ ++     +    Q H + ++SG      V  N+L+ +Y K  
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV-SNALVSVYSKCA 198

Query: 195 ----VLYYAFGVFLNMEELDIISW--------------------------------NSLI 218
               +L+ A  VF  + E D  SW                                N++I
Sbjct: 199 SSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMI 258

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           SG  N G+ + AL+    M  SG   DE+T   VI AC     L  GKQV A  ++    
Sbjct: 259 SGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF 318

Query: 279 S----NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN------------------ 316
           S    NS+V      L+ KC + +++  +FE++   D    N                  
Sbjct: 319 SFHFDNSLV-----SLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 317 -------------VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE 363
                        +MIS     GFGE  L+LF  M RE   P ++  S  + S  +    
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433

Query: 364 -HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            +G Q+H+  +K GFDS+    ++L+ MYAK G ++ + ++F  +   D VSWN ++  L
Sbjct: 434 CNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAAL 493

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            Q+G  AE +DV+EE+L++G+ PDRITL  VL AC++ G VD+G   F +M+  Y + PG
Sbjct: 494 GQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPG 553

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            +HYA +IDLLC++G+   A  +  ++PF+P   IWE++L    ++G+++L    A+++ 
Sbjct: 554 ADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
            L       Y LL+  +A  G+WE + RV+K+MR  G+ K   CSWI ++ +++TF   +
Sbjct: 614 GLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD 673

Query: 603 LQHHGGQKIYLVLRLLTWEMEDEGCV 628
             H   + +Y+ L+ L  EM   G V
Sbjct: 674 TSHPEAEAVYIYLQDLGKEMRRLGYV 699



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKL-GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +I  C +       K +H ++ +   F+ H    N  + LY + G  D+   +F+++P K
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDFSFH--FDNSLVSLYYKCGKFDEARAIFEKMPAK 349

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + +SWN  L G + S ++  A  +F E+ E +++SW  MISG A  G+ +  L++FS M+
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409

Query: 140 LQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G  P  + FS  + + +   + C+G+Q H  +++ G   S++  GN+LI MY K GV+
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFD-SSLSAGNALITMYAKCGVV 468

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  M  LD +SWN+LI+     G+G  A+D +  M   G  PD  T+  V+ AC
Sbjct: 469 EEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTAC 528

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +D+G++ F ++         +   +  IDL  +  +  D+  + E L
Sbjct: 529 SHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL 580


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/634 (29%), Positives = 343/634 (54%), Gaps = 71/634 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + +HGHL +   N+   LG+  +D+YS+ G  ++  Q+F               R LL 
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF---------------RSLL- 439

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSI 152
                          E + VS+N++++GY   G ++ ALE++  MQ + G++P  FTF+ 
Sbjct: 440 ---------------ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTT 484

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL+  ++      G+QIH  +IR+ ++  N+++   L+ MY + G L YA  +F  M E 
Sbjct: 485 LLTLCANQRNDNQGRQIHAHLIRANIT-KNIIVETELVHMYSECGRLNYAKEIFNRMAER 543

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +  SWNS+I G   +G  + AL  F  M+ +G  PD +++S ++++C  L +  KG+++ 
Sbjct: 544 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELH 603

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCN-------------------------------RLE 298
              V+       I+    +D+++KC                                R  
Sbjct: 604 NFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAN 663

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SI 357
           D+  LF+Q+++ + A+ N +++ Y   G  + +   F  ML  DI     T+  +++   
Sbjct: 664 DAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCS 723

Query: 358 PIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
            +P +EHG Q HS+ IK GF + + V+ ++L++MY+K G+I  +  +F  ++ +++VSWN
Sbjct: 724 SLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G +++G + E L ++EE+ ++G+ P+ +T  A+L AC++ G V++G+ +F++M+E+
Sbjct: 784 AMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y +    EHY C++DLL +AG+L  A +    MP +P  S W ++L A  ++ D+ +   
Sbjct: 844 YNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRL 903

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            A+R+ +L   +P PY +++  YA  GRW+ +  ++++M+  G+ K  G SWI I + I 
Sbjct: 904 AAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQ 963

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYL 630
            F+AG   H   ++IY  LR LT  ++ +G  Y+
Sbjct: 964 IFHAGSKTHPKTEEIYNNLRHLT--LQSKGLGYI 995



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 228/444 (51%), Gaps = 34/444 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI  C+   SF   K+IH  +   G+N   YL  + L LY+R G              
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSG-------------- 120

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                   CL      D+L  A K+F+E+PE ++ +WN+MI  YA        L ++ +M
Sbjct: 121 --------CL------DDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRM 166

Query: 139 QLQGVRPSGFTF-SILLSTVSSACHG--KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G     FTF S++ + ++    G  +Q+  S++++GL+  N+ +G +L+D Y + G 
Sbjct: 167 RGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLN-CNLFVGGALVDGYARFGW 225

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A      +E   +++WN++I+G       E A   F  M   G  PD +T +  +  
Sbjct: 226 MDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRV 285

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  LR+ D GKQV +  +  GF  ++ V +A ID+++KC+  E  +++F+++   +    
Sbjct: 286 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 345

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIK 374
           N +IS   ++G    AL LF  M     +   F L  +L +S  +  +  G + H   ++
Sbjct: 346 NSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +  +S+ ++ S+L++MY+K G ++ + ++F  L +R+ VS+N ++ G  Q G+A E L++
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALEL 465

Query: 435 FEELL-EEGLPPDRITLAAVLLAC 457
           + ++  E+G+ PD+ T   +L  C
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLC 489



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 234/538 (43%), Gaps = 106/538 (19%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C + ++ +  + IH HL +     +  +    + +YS  G  +   ++F+ + +
Sbjct: 483 TTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 542

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN                               SMI GY   G +  AL +F +M
Sbjct: 543 RNAYSWN-------------------------------SMIEGYQQNGETQEALRLFKQM 571

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           QL G++P  F+ S +LS   ++S +  G+++H  ++R+ +     +L   L+DMY K G 
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG-ILQVVLVDMYAKCGS 630

Query: 196 LYYAFGV-------------------------------FLNMEELDIISWNSLISGCFNS 224
           + YA+ V                               F  ME+ +   WNS+++G  N 
Sbjct: 631 MDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANK 690

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G  + + + F  M  S    D  T+  ++N C+ L  L+ G Q+ +L +K GF++ S+VL
Sbjct: 691 GLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVL 750

Query: 285 -SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +A +D++SKC  +  +  +F+ ++  +    N MIS Y ++G  + AL L++ M ++ +
Sbjct: 751 ETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGM 810

Query: 344 RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            P E T   +LS+            H+  ++ G      + +S+ E Y    +I++  E 
Sbjct: 811 YPNEVTFLAILSACS----------HTGLVEEGLR----IFTSMQEDY----NIEAKAEH 852

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           +            T M+ L   GRA    D  E + +  + P+  T  A+L AC     +
Sbjct: 853 Y------------TCMVDLL--GRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 898

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ-----PGCS 516
           D G L    + E     PG   Y  + ++   AG+  +  DI   M  +     PG S
Sbjct: 899 DMGRLAAQRLFELDPQNPGP--YVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVS 954



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 4/228 (1%)

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED---SVRLFEQ 306
           S +I  C    +  +GK +    +  G+  ++ +++  + L+++   L+D   + +LFE+
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
           +   +    N MI  Y R       L L+  M        +FT   V+ + I +  +   
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV 194

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q  S  +K+G + N  V  +L++ YA+ G +D +     +++   +V+WN ++ G  + 
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
               E   +F+ +L+ G+ PD  T A+ L  C      D G  V S +
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKL 302


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 197/623 (31%), Positives = 317/623 (50%), Gaps = 37/623 (5%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++KA V  +  ++ S +   C    +      +HGH  K  F     +G   LD+Y    
Sbjct: 266 MQKAGVGVSQSTFAS-VFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMY---- 320

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                      +K +NL  A K+F+ +P  ++ S+N++I GYA 
Sbjct: 321 ---------------------------MKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYAR 353

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVV 181
                 AL MF  +Q  G+     + S      + +     G Q+HG  ++S L  SN+ 
Sbjct: 354 SDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKS-LCQSNIC 412

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N+++DMYGK G L  A  VF  M   D +SWN++I+    +G  E  L  F  M  SG
Sbjct: 413 VANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG 472

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE+T   V+ AC   + L+ G ++    +K     +S V  A ID++SKC  +E + 
Sbjct: 473 MEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAE 532

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           +L ++L        N +IS +      E A + F  ML   + P  FT + +L +   + 
Sbjct: 533 KLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLV 592

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            VE G Q H+  IK    S+A ++S+L++MY+K G++     IF K   RD V+WN ++ 
Sbjct: 593 TVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVC 652

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  Q+G   E L +FE +  E + P+  T  AVL AC + G V+KG+  F +M   YG+ 
Sbjct: 653 GYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLD 712

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  EHY+C++D++ ++GQ+ KA+++   MPF+    IW ++L    I+G+V++ E  A  
Sbjct: 713 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYS 772

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++ L+      Y LL+  YA  G W  + +++K+MR NG+ K  GCSWI IK+ ++ F  
Sbjct: 773 ILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLV 832

Query: 601 GELQHHGGQKIYLVLRLLTWEME 623
           G+  H   ++IY  L +LT EM+
Sbjct: 833 GDKAHPRSKEIYENLDVLTDEMK 855



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 156/545 (28%), Positives = 276/545 (50%), Gaps = 14/545 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K+    K  H  +    F    ++ N  + +Y +    +   ++FD +PQ
Sbjct: 46  SHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQ 105

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SWN  L G     ++  A K+FD +PE DVVSWNS+ISGY   G     +++F +M
Sbjct: 106 RDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQM 165

Query: 139 QLQGVRPSGFTFSILLSTVSS-ACHGK--QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G      TF+++L + SS   HG   QIHG  ++ G    +VV G++L+DMY K   
Sbjct: 166 GRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFD-CDVVTGSALLDMYAKCKK 224

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +   F +M E + +SW+++I+GC  +      L+ F  M+ +G    + T + V  +
Sbjct: 225 LDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRS 284

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L  G Q+   ++K  F ++ ++ +AT+D++ KCN L D+ +LF  L   +    
Sbjct: 285 CAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSY 344

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIK 374
           N +I  Y R   G  AL +F+L+ +  +   E +LS    +  +   +  G Q H +++K
Sbjct: 345 NAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMK 404

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S   SN  VA+++++MY K G++  +  +F ++  RD VSWN I+    QNG   +TL +
Sbjct: 405 SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSL 464

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYACI--ID 491
           F  +L+ G+ PD  T  +VL AC     ++ GM + +  +K   G+    + +  I  ID
Sbjct: 465 FVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGL----DSFVGIALID 520

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPL 550
           +  + G + KA  +   +  Q   S W +I+   ++    +  +    +M+++ + P   
Sbjct: 521 MYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF 579

Query: 551 PYSLL 555
            Y+ +
Sbjct: 580 TYATI 584



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 36/267 (13%)

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           S +  L +  F S  Y      + T S +   C+  + L  GKQ  A  +   F     V
Sbjct: 22  SPFKTLPISPFSS--YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFV 79

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +  I ++ KC+ LE + ++F+ + + D    N M+  Y   G   VA +LF  M   D+
Sbjct: 80  TNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDV 139

Query: 344 RP----------------------------TEF---TLSCVLSSIPIPPVEHGS--QFHS 370
                                         T F   T + VL S      +HG   Q H 
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCS-SLEDHGGGIQIHG 198

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           +A+K GFD + V  S+L++MYAK   +D S + F  + +++ VSW+ I+ G  QN     
Sbjct: 199 LAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRG 258

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLAC 457
            L++F+E+ + G+   + T A+V  +C
Sbjct: 259 GLELFKEMQKAGVGVSQSTFASVFRSC 285


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 318/545 (58%), Gaps = 17/545 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L +A KVF+++PE + V+W  MI+     GY+  A+++F +M L G  P  FT    LS
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFT----LS 275

Query: 156 TVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLN 205
            V SAC        G+Q+H   IR GL+L   V G  LI+MY K    G +  A  +F  
Sbjct: 276 GVISACANMELLLLGQQLHSQAIRHGLTLDRCV-GCCLINMYAKCSVDGSMCAARKIFDQ 334

Query: 206 MEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           + + ++ SW ++I+G    G Y E ALD F  M  +   P+ +T S  + AC  L  L  
Sbjct: 335 ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+QVF  +VK+GF S + V ++ I ++++  R++D+ + F+ L   +    N +I  Y +
Sbjct: 395 GEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAK 454

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
               E ALELF  +  + +  + FT + +LS +  I  +  G Q H+  IKSG   N  V
Sbjct: 455 NLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSV 514

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L+ MY++ G+I+S+ ++F  ++ R+++SW +I+ G  ++G A + L++F ++LEEG+
Sbjct: 515 CNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV 574

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P+ +T  AVL AC++ G V++G   F +M  E+GV+P  EHYAC++D+L ++G L +AI
Sbjct: 575 RPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAI 634

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
              ++MP++    +W + L A  ++G+++L ++ A+ +++ +   P  Y LL+  YA   
Sbjct: 635 QFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTS 694

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +W+ +  ++K M++  + K  GCSW+ ++N+++ F  G+  H    +IY  L+ L+ +++
Sbjct: 695 KWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIK 754

Query: 624 DEGCV 628
             G V
Sbjct: 755 KLGYV 759



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 254/534 (47%), Gaps = 41/534 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  + +C+  +SFD    +H  L +      +   N  + LYS+ G  +    +F     
Sbjct: 70  SLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQ---- 125

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                       L+ S                D++SW++M+S +A+      AL  F  M
Sbjct: 126 ------------LMGSSR--------------DLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-LG 194
              G  P+ + F+      S+A     G  I G ++++G   S+V +G  LIDM+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  AF VF  M E + ++W  +I+     GY   A+D F  M  SGY PD +T+S VI+
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVIS 279

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWD 311
           AC  +  L  G+Q+ + +++ G   +  V    I++++KC+    +  + ++F+Q+   +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 312 YAVINVMISTY-GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
                 MI+ Y  + G+ E AL+LF+ M+   + P  FT S  L +   +  +  G Q  
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           + A+K GF S   VA+SL+ MYA++G ID + + F  L +++L+S+NT++    +N  + 
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L++F E+ ++G+     T A++L      G + KG  + + + +  G+   +     +
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNAL 518

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           I +  + G +  A  +   M  +   S W SI+   A +G       +  +M++
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVIS-WTSIITGFAKHGFATQALELFHKMLE 571



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 37/303 (12%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           HV     ++ S L   C +  +    + +  H  KLGF++   + N  + +Y+R G  DD
Sbjct: 371 HVIPNHFTFSSTL-KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD 429

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             + FD + +KN IS+N  +    K+ N + AL++F+EI +                   
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIED------------------- 470

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
                       QG+  S FTF+ LLS   ++ +   G+QIH  +I+SGL L+  V  N+
Sbjct: 471 ------------QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC-NA 517

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI MY + G +  AF VF +ME+ ++ISW S+I+G    G+   AL+ F+ M   G  P+
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPN 577

Query: 246 EYTISIVINACTKLRNLDKG-KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
             T   V++AC+ +  +++G K   ++  + G +      +  +D+  +   L ++++  
Sbjct: 578 LVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFI 637

Query: 305 EQL 307
             +
Sbjct: 638 NSM 640



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 4/239 (1%)

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    A+     M + G  PD  T S+ +  C + R+ D G  V     +     +S+
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            L++ I L+SKC + E +  +F+ +    D    + M+S +     G  AL  F  M+  
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAK-TGSID 398
              P E+  +    +      V  G       +K+G+  S+  V   L++M+ K  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           S+ ++F K+ +R+ V+W  ++  L Q G A E +D+F E++  G  PDR TL+ V+ AC
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC 281



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           L+ + L L++ IR   F +              G+  H    +S    ++V  +SL+ +Y
Sbjct: 66  LQTYSLFLKKCIRTRSFDI--------------GTLVHEKLTQSDLQLDSVTLNSLISLY 111

Query: 392 AKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           +K G  + +T IF  +   RDL+SW+ ++     N      L  F +++E G  P+    
Sbjct: 112 SKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCF 171

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC-IIDLLCQA-GQLGKAIDITST 508
           AA   AC+   FV  G  +F  + +  G +  +    C +ID+  +  G L  A  +   
Sbjct: 172 AAATRACSTAEFVSVGDSIFGFVVKT-GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 509 MP 510
           MP
Sbjct: 231 MP 232


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 322/615 (52%), Gaps = 43/615 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CL+      A+ +HG+  K+G     ++    +++YS+ G   D   LFD         W
Sbjct: 193 CLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFD---------W 243

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                 + E DVV WN M+ GY   G    A ++FS+    G+R
Sbjct: 244 ----------------------MRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLR 281

Query: 145 PSGFTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           P  F+  ++L+    A       GKQ+HG  ++SGL  S+V + NSL++MY K+G  Y+A
Sbjct: 282 PDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD-SDVSVANSLVNMYSKMGCAYFA 340

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI-----N 254
             VF +M+ LD+ISWNS+IS C  S   E +++ F  + + G  PD +T++ +       
Sbjct: 341 REVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAK 400

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  LD+GKQ+ A ++K GF S+  V S  +D++ KC  + ++  +F  +   D   
Sbjct: 401 ACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA 460

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAI 373
              MIS     G  + AL ++  M +  + P E+T + ++ +S  +  +E G Q H+  I
Sbjct: 461 WTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI 520

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K    S+  V +SL++MYAK G+I+ +  +F K++ R++  WN +++GL Q+G A E ++
Sbjct: 521 KLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVN 580

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F+ +   G+ PDR++   +L AC++ G   +      +M  +YG+ P  EHY+C++D L
Sbjct: 581 LFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDAL 640

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG + +A  +  TMPF+   SI  ++L A  I GDV+  + VA R+  L+      Y 
Sbjct: 641 GRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYV 700

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL+  YA   RW+ +   +K+M++  + K  G SWI +KN ++ F   +  H     IY 
Sbjct: 701 LLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYD 760

Query: 614 VLRLLTWEMEDEGCV 628
            +  +   + ++G V
Sbjct: 761 KVEEMMKTIREDGYV 775



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 231/466 (49%), Gaps = 21/466 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASC-----GYSDYALEMFSKMQLQGVRPSG 147
           K  +L +A +VFD  PE D+V+WN+++  YA+      G +   L +F  ++      + 
Sbjct: 124 KCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTR 183

Query: 148 FTFSILLS-TVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            T + +L   ++S C    + +HG  I+ GL   +V +  +L+++Y K G +  A  +F 
Sbjct: 184 MTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEW-DVFVSGALVNIYSKCGRMRDARLLFD 242

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC--TKLRNL 262
            M E D++ WN ++ G    G  + A   F     SG  PDE+++ +++N C      +L
Sbjct: 243 WMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDL 302

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           + GKQV  ++VK G  S+  V ++ ++++SK      +  +F  +   D    N MIS+ 
Sbjct: 303 ELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSC 362

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP------VEHGSQFHSMAIKSG 376
            +    E ++ LF  +L E ++P  FTL+ +  +           ++ G Q H+ AIK+G
Sbjct: 363 AQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAG 422

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FDS+  V S +++MY K G + ++  +F  +   D V+W +++ G   NG   + L ++ 
Sbjct: 423 FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 482

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKG-MLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            + +  + PD  T A ++ A +    +++G  L  + +K +    P       ++D+  +
Sbjct: 483 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAK 540

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            G +  A  +   M  +   ++W ++L   A +G+ +   N+ + M
Sbjct: 541 CGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSM 585



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 199/411 (48%), Gaps = 19/411 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK  H  ++ SG S  +  L N+L+ MY K G L  A  VF    E D+++WN+++ G +
Sbjct: 96  GKCTHARIVVSG-SAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAIL-GAY 153

Query: 223 ------NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
                 N G  +  L  F  +R S  S    T++ V+  C     L   + V   ++K+G
Sbjct: 154 AASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG 213

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              +  V  A ++++SKC R+ D+  LF+ +   D  + N+M+  Y + G  + A +LF 
Sbjct: 214 LEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFS 273

Query: 337 LMLREDIRPTEFTLSCVLSS---IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
              R  +RP EF++  +L+         +E G Q H +A+KSG DS+  VA+SL+ MY+K
Sbjct: 274 EFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK 333

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G    + E+F  +   DL+SWN+++    Q+    E++++F +LL EGL PD  TLA++
Sbjct: 334 MGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASI 393

Query: 454 LL-----ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
            L     AC     +D+G  +  A   + G        + I+D+  + G +  A  I   
Sbjct: 394 TLATAAKACGCLVLLDQGKQIH-AHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFN 451

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQA 558
               P    W S++      G+      +  RM   + +P    ++ L +A
Sbjct: 452 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 502



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 17/223 (7%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T ++++  CT  R +  G      S    FLSN++     + ++SKC  L  + ++F+  
Sbjct: 90  THNLLLGKCTHARIVVSG------SAGDHFLSNNL-----LTMYSKCGSLSSARQVFDTT 138

Query: 308 DRWDYAVINVMISTYGRY-----GFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPP 361
              D    N ++  Y        G  +  L LF+L+       T  TL+ VL   +    
Sbjct: 139 PERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGC 198

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +      H  AIK G + +  V+ +L+ +Y+K G +  +  +F  + +RD+V WN ++ G
Sbjct: 199 LWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 258

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             Q G   E   +F E    GL PD  ++  +L  C + G  D
Sbjct: 259 YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDD 301


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 201/682 (29%), Positives = 344/682 (50%), Gaps = 75/682 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF--------------- 63
           S ++  C   K FD  + +H  +FK G +  TY+ N  + LYSR                
Sbjct: 217 SSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQS 276

Query: 64  ----------------GTSDDVLQLFDEIPQ----------------------------- 78
                           G SD  L+LF ++ +                             
Sbjct: 277 KDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQL 336

Query: 79  -----KNCISWNICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                K  IS ++ + G L        ++ TA ++F      +VV WN M+  +      
Sbjct: 337 HSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNL 396

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
             +  +F +MQ++G+ P+ FT+  +L T +S      G+QIH  +I++G    NV + + 
Sbjct: 397 SESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF-NVYVCSV 455

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K G L  A  +   + E D++SW +LISG         AL  F  M   G   D
Sbjct: 456 LIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSD 515

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
               S  I+AC  ++ L++G+Q+ A S   G+  +  + +A + L+++C R++++   FE
Sbjct: 516 NIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFE 575

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEH 364
           ++D  D    N +IS + + G+ E AL++F  M R  +  + FT  S V ++  I  ++ 
Sbjct: 576 KIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQ 635

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+M IK GFDS+  V+++L+  YAK GSI+ +   F ++ +++ VSWN ++ G +Q
Sbjct: 636 GKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQ 695

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   E +++FE++ + G  P+ +T   VL AC++ G V KG+  F +M +E+G++P   
Sbjct: 696 HGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPA 755

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC++DL+ +AG L +A      MP +P  +IW ++L A  ++ +V++ E  A+ +++L
Sbjct: 756 HYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLEL 815

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+  YA+ G+W+   + +++MR  G+ K  G SWI +KN ++ F  G+  
Sbjct: 816 EPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRL 875

Query: 605 HHGGQKIYLVLRLLTWEMEDEG 626
           H    KIY  L  L  +  + G
Sbjct: 876 HPLADKIYEFLAELNKKAAEIG 897



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 249/499 (49%), Gaps = 48/499 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+D CL+  S    K +HG + KLGF   + L N+ +D+Y   G                
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALG---------------- 59

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +LD  +KVF+++P   V SW+ +ISG+     S+  L++FS M  
Sbjct: 60  ---------------DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIE 104

Query: 141 QGVRPSGFTFSILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           + V P+  +F+ +L   S    G    +QIH  +I  GL L + ++ N LI +Y K G++
Sbjct: 105 ENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGL-LCSPIISNPLIGLYAKNGLI 163

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF N+   D +SW ++ISG   +GY E A+  F  M  +G  P  Y  S V++ C
Sbjct: 164 ISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGC 223

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           TK++  D G+Q+ AL  K G    + V +A + L+S+      + ++F ++   D    N
Sbjct: 224 TKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFN 283

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
            +IS   + GF + ALELF  M R+ ++P   T++ +LS+      +  G Q HS  IK+
Sbjct: 284 SLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA 343

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G  S+ +V  +L+++Y     I ++ E+F+     ++V WN +++   +    +E+  +F
Sbjct: 344 GISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIF 403

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYAC--II 490
            ++  +GL P++ T  ++L  C   G +D G  + + + +   ++ V      Y C  +I
Sbjct: 404 RQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNV------YVCSVLI 457

Query: 491 DLLCQAGQLGKAIDITSTM 509
           D+  + G+L  A  I  T+
Sbjct: 458 DMYAKHGKLDTAHVILRTL 476



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 144/328 (43%), Gaps = 35/328 (10%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M + G   +  T   +++ C    +L + K++    +K+GF + S++ +  +D++     
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L+  V++FE +        + +IS +         L+LF  M+ E++ PTE + + VL +
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 357 IPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                  + +  Q H+  I  G   + ++++ L+ +YAK G I S+ ++F  L  +D VS
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG----MLVF 470
           W  ++ G +QNG   E + +F E+   G+ P     ++VL  C      D G     LVF
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 471 -----------SAMKEEYGVMPG---------------EEHYACIIDLLCQAGQLGKAID 504
                      +A+   Y  MP                E  +  +I  L Q G    A++
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALE 300

Query: 505 ITSTMP---FQPGCSIWESILRASAIYG 529
           + + M     +P C    S+L A A  G
Sbjct: 301 LFTKMKRDYLKPDCVTVASLLSACASNG 328


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/634 (32%), Positives = 328/634 (51%), Gaps = 36/634 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD----VLQLFDEI 76
           ++  C S +       IHG   K+GF+     G+  LD+Y++    +D     L+LF E+
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 77  PQK------------------NCISWNICLRGLLKSDNL-DTALKVFDEIPEPDVVSWNS 117
            +                   + +     L   +K +NL D + ++F+ +P  ++ S+N+
Sbjct: 224 QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSM 170
           +I GYA       AL MF  +Q  G+        + LS    AC        G Q+HG  
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLD----EVSLSGAXRACAVIKGDLEGLQVHGLS 339

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           ++S L  SN+ + N+++DMYGK G L  A  VF  M   D +SWN++I+    +G  E  
Sbjct: 340 MKS-LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKT 398

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           L  F  M  SG  PDE+T   V+ AC   + L+ G ++    +K     +S V  A ID+
Sbjct: 399 LSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDM 458

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           +SKC  +E + +L ++L        N +IS +      E A + F  ML   + P  FT 
Sbjct: 459 YSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTY 518

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           + +L +   +  VE G Q H+  IK    S+A ++S+L++MY+K G++     IF K   
Sbjct: 519 ATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 578

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           RD V+WN ++ G  Q+G   E L +FE +  E + P+  T  AVL AC + G V+KG+  
Sbjct: 579 RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 638

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           F +M   YG+ P  EHY+C++D++ ++GQ+ KA+++   MPF+    IW ++L    I+G
Sbjct: 639 FHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHG 698

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           +V++ E  A  ++ L+      Y LL+  YA  G W  + +++K+MR NG+ K  GCSWI
Sbjct: 699 NVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWI 758

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            IK+ ++ F  G+  H   ++IY  L +LT EM+
Sbjct: 759 EIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMK 792



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 219/498 (43%), Gaps = 77/498 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K+    K  H  +    F    ++ N  + +Y +        ++FD +PQ
Sbjct: 46  SHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQ 105

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS-K 137
           ++ +SWN  L G     ++  A K+FD +P                CG     +E+F  +
Sbjct: 106 RDTVSWNAMLFGYAGRGDIGVAQKLFDAMPG-------------TGCG----VVELFDFR 148

Query: 138 MQLQGVRPSGFTFSILLSTVSS-ACHGK--QIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G      TF+++L + SS   HG   QIHG  ++ G    +VV G++L+DMY K  
Sbjct: 149 MGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFD-CDVVTGSALLDMYAKCC 207

Query: 195 V-----------------------------LYYAFG------------------------ 201
           V                             L   FG                        
Sbjct: 208 VQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSN 267

Query: 202 -VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F ++   ++ S+N++I G   S  G  AL  F  ++ SG   DE ++S    AC  ++
Sbjct: 268 QLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIK 327

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
              +G QV  LS+K    SN  V +A +D++ KC  L ++  +FE++   D    N +I+
Sbjct: 328 GDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIA 387

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS 379
            + + G  E  L LF  ML+  + P EFT   VL +      +  G + H+  IKS    
Sbjct: 388 AHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGL 447

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           ++ V  +L++MY+K G ++ + ++  +L ++ +VSWN I+ G +   ++ E    F ++L
Sbjct: 448 DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKML 507

Query: 440 EEGLPPDRITLAAVLLAC 457
           E G+ PD  T A +L  C
Sbjct: 508 EMGVDPDNFTYATILDTC 525



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 213/491 (43%), Gaps = 87/491 (17%)

Query: 149 TFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           TFS +    S   + C GKQ H  MI +      V + N LI MY K   L +AF VF  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFK-PTVFVTNCLIQMYIKCSDLGFAFKVFDG 102

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQF-----------------YSMRYSGYSPDEYT 248
           M + D +SWN+++ G   +G G++ + Q                  + M   G   D  T
Sbjct: 103 MPQRDTVSWNAMLFG--YAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTT 160

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA---------------------- 286
            ++V+ +C+ L +   G Q+  L+VK+GF  + +  SA                      
Sbjct: 161 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELF 220

Query: 287 -------------------------------TIDLFSKCNRLED-SVRLFEQLDRWDYAV 314
                                          T+D++ KCN L D S +LF  L   +   
Sbjct: 221 KEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQS 280

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAI 373
            N +I  Y R   G  AL +F+L+ +  +   E +LS    +  +   +  G Q H +++
Sbjct: 281 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSM 340

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           KS   SN  VA+++++MY K G++  +  +F ++  RD VSWN I+    QNG   +TL 
Sbjct: 341 KSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLS 400

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYACI--I 490
           +F  +L+ G+ PD  T  +VL AC     ++ GM + +  +K   G+    + +  I  I
Sbjct: 401 LFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGL----DSFVGIALI 456

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSP 549
           D+  + G + KA  +   +  Q   S W +I+   ++    +  +    +M+++ + P  
Sbjct: 457 DMYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515

Query: 550 LPYSLLTQAYA 560
             Y+ +    A
Sbjct: 516 FTYATILDTCA 526



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/464 (21%), Positives = 176/464 (37%), Gaps = 95/464 (20%)

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           S +  L +  F S  Y      + T S +   C+  + L  GKQ  A  +   F     V
Sbjct: 22  SPFKTLPISPFSS--YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFV 79

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM----- 338
            +  I ++ KC+ L  + ++F+ + + D    N M+  Y   G   VA +LF  M     
Sbjct: 80  TNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGC 139

Query: 339 -------LREDIRPTEF---TLSCVLSSIPIPPVEHGS--QFHSMAIKSGFDSNAVVASS 386
                   R     T F   T + VL S      +HG   Q H +A+K GFD + V  S+
Sbjct: 140 GVVELFDFRMGRMGTVFDRTTFAVVLKSCS-SLEDHGGGIQIHGLAVKMGFDCDVVTGSA 198

Query: 387 LMEMYAK--------------------------------------------TGSID---- 398
           L++MYAK                                            T ++D    
Sbjct: 199 LLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMK 258

Query: 399 ------SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
                  S ++F  L   +L S+N I++G  ++ +  E L +F  L + GL  D ++L+ 
Sbjct: 259 CNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSG 318

Query: 453 VLLAC-----NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
              AC     +  G    G+ + S  +    V         I+D+  + G L +A  +  
Sbjct: 319 AXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANA------ILDMYGKCGALVEACLVFE 372

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWE 566
            M  +   S W +I+ A    G+ + T ++   M+   + P    Y  + +A A    W+
Sbjct: 373 EMVSRDAVS-WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA---GWQ 428

Query: 567 AI-----VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
           A+     +  + +  + G++   G + I + ++       E  H
Sbjct: 429 ALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLH 472


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 189/630 (30%), Positives = 329/630 (52%), Gaps = 38/630 (6%)

Query: 34  AKTIHGHLFKLGFNAH-TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           A  +H  + K    A  T+L N  L  Y++ G      ++FDE+P  N  + N  L  L 
Sbjct: 31  AGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALA 90

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFS 151
            S  +    ++F  +PE D VS+N++I+G++S G    +++++  + + + VRP+  T S
Sbjct: 91  HSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLS 150

Query: 152 ILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME- 207
            ++   S +S    G  +H  ++R G   +   +G+ L+DMY K+G++  A  VF  ME 
Sbjct: 151 AMIMVASALSDRALGHSVHCQVLRLGFG-AYAFVGSPLVDMYAKMGLIRDARRVFQEMEA 209

Query: 208 ------------------------------ELDIISWNSLISGCFNSGYGELALDQFYSM 237
                                         + D I+W ++++G   +G    ALD F  M
Sbjct: 210 KTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRM 269

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R  G   D+YT   ++ AC  L   ++GKQ+ A   +  +  N  V SA +D++SKC  +
Sbjct: 270 RAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSI 329

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +  +F ++   +      MI  YG+    E A+  F  M  + I+P +FTL  V+SS 
Sbjct: 330 RLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSC 389

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G+QFH +A+ SG      V+++L+ +Y K GSI+ +  +F ++   D VSW 
Sbjct: 390 ANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 449

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  Q G+A ET+D+FE++L  GL PD +T   VL AC+  G V+KG   F +M+++
Sbjct: 450 ALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKD 509

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           + ++P ++HY C+IDL  ++G+  +A +    MP  P    W ++L +  + G++++ + 
Sbjct: 510 HDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKW 569

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            AE +++    +P  Y LL   +A +G+W  +  +++ MR   + K  GCSWI  KN+++
Sbjct: 570 AAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVH 629

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            F+A +  H    +IY  L  L  +M +EG
Sbjct: 630 IFSADDQSHPFSSRIYEKLEWLNSKMAEEG 659



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 227/452 (50%), Gaps = 18/452 (3%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A +   S L DR L         ++H  + +LGF A+ ++G+  +D+Y++ G   D  ++
Sbjct: 151 AMIMVASALSDRAL-------GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRV 203

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F E+  K  + +N  + GLL+   ++ A  +F  + + D ++W +M++G    G    AL
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263

Query: 133 EMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           ++F +M+ +GV    +TF  +L+    ++++  GKQIH  + R+     NV +G++L+DM
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYE-DNVFVGSALVDM 322

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K   +  A  VF  M   +IISW ++I G   +   E A+  F  M+  G  PD++T+
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             VI++C  L +L++G Q   L++  G +    V +A + L+ KC  +ED+ RLF+++  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ- 367
            D      +++ Y ++G  +  ++LF+ ML   ++P   T   VLS+      VE G   
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNG 426
           F SM             + ++++Y+++G    + E   ++    D   W T++      G
Sbjct: 503 FDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                +++ +   E  L  D    A+ +L C+
Sbjct: 563 ----NMEIGKWAAENLLETDPQNPASYVLLCS 590


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 201/660 (30%), Positives = 349/660 (52%), Gaps = 81/660 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    SF    ++H  +F  GF  + ++GN  + +Y R G  ++  Q+FDE+ +  
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRE-- 208

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                   RG+                   D+VSWNS+++ Y   G S  A++MF +M  
Sbjct: 209 --------RGV------------------GDLVSWNSIVAAYMQGGDSIRAMKMFERMTE 242

Query: 141 Q-GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G+RP   +   +L   ++V +   GKQ+HG  +RSGL   +V +GN+++DMY K G++
Sbjct: 243 DLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGL-FEDVFVGNAVVDMYAKCGMM 301

Query: 197 YYAFGVFLNME-----------------------------------ELDIISWNSLISGC 221
             A  VF  M+                                   EL++++W+++I+G 
Sbjct: 302 EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGY 361

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK--VGFLS 279
              G G  ALD F  M   G  P+  T+  +++ C     L  GK+    ++K  +    
Sbjct: 362 AQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDE 421

Query: 280 NS-----IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVAL 332
           N      +V++A ID++SKC   + +  +F+ +   D +V+   V+I    ++G    AL
Sbjct: 422 NDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEAL 481

Query: 333 ELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASSLM 388
           ELF  ML+ D  + P  FT+SC L +   +  +  G Q H+  +++ F+S  + VA+ L+
Sbjct: 482 ELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLI 541

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K+G +D++  +F  + +R+ VSW ++M G   +GR  E L +F E+ +  L PD +
Sbjct: 542 DMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGV 601

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G VD+G+  F+ M +++GV+PG EHYAC++DLL +AG+L +A+++   
Sbjct: 602 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 661

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP +P  ++W ++L A  +Y +V+L E  A ++++L+  +   Y+LL+  YA    W+ +
Sbjct: 662 MPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDV 721

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            R++ +M+  GI K  GCSW+  +    TF AG+  H   Q+IY +LR L   ++  G V
Sbjct: 722 ARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYV 781



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 214/472 (45%), Gaps = 56/472 (11%)

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHG 168
           V  WN +I      G+ +  L+++ +MQ  G RP  +TF  +L     + S   G  +H 
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSG 225
            +  SG    NV +GN L+ MYG+ G    A  VF  M E    D++SWNS+++     G
Sbjct: 170 VVFASGFEW-NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 226 YGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
               A+  F  M    G  PD  ++  V+ AC  +    +GKQV   +++ G   +  V 
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 288

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY---GRY---------------- 325
           +A +D+++KC  +E++ ++FE++   D    N M++ Y   GR+                
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 326 ----------------GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQF 368
                           G G  AL++F+ ML     P   TL  +LS       + HG + 
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 369 HSMAIKS--GFDSN-----AVVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIM 419
           H  AIK     D N      +V ++L++MY+K  S  ++  +F  +    R +V+W  ++
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 420 MGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
            G  Q+G A E L++F ++L+    + P+  T++  L+AC   G +  G  + + +    
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 528

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                     C+ID+  ++G +  A  +   M  + G S W S++    ++G
Sbjct: 529 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYGMHG 579


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 316/545 (57%), Gaps = 17/545 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L +A KVF+++PE + V+W  MI+     GY+  A+++F  M   G  P  FT    LS
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFT----LS 275

Query: 156 TVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLN 205
            V SAC        G+Q+H   IR GL+L   V G  LI+MY K    G +  A  +F  
Sbjct: 276 GVISACANMELLLLGQQLHSQAIRHGLTLDRCV-GCCLINMYAKCSVDGSMCAARKIFDQ 334

Query: 206 MEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           + + ++ SW ++I+G    G Y E ALD F  M  +   P+ +T S  + AC  L  L  
Sbjct: 335 ILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+QVF  +VK+GF S + V ++ I ++++  R++D+ + F+ L   +    N +I  Y +
Sbjct: 395 GEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAK 454

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
               E ALELF  +  + +  + FT + +LS +  I  +  G Q H+  IKSG   N  V
Sbjct: 455 NLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSV 514

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L+ MY++ G+I+S+ ++F  ++ R+++SW +I+ G  ++G A + L++F ++LEEG+
Sbjct: 515 CNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV 574

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P+ +T  AVL AC++ G V++G   F +M  E+GV+P  EHYACI+D+L ++G L +AI
Sbjct: 575 RPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAI 634

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
              ++MP++    +W + L A  ++G+++L ++ A+ +++ +   P  Y LL+  YA   
Sbjct: 635 QFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASIS 694

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +W+ +  ++K M++  + K  GCSW+ ++N+++ F  G+  H    +IY  L+ L+ +++
Sbjct: 695 KWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIK 754

Query: 624 DEGCV 628
             G V
Sbjct: 755 KLGYV 759



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 260/544 (47%), Gaps = 42/544 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  + +C+  +SFD    +H  L +      +   N  + LYS+ G  +    +F     
Sbjct: 70  SLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFR---- 125

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                       L+ S                D++SW++M+S +A+      AL  F  M
Sbjct: 126 ------------LMGSSR--------------DLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-LG 194
              G  P+ + F+      S+A     G  I G +I++G   S+V +G  LIDM+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  AF VF  M E + ++W  +I+     GY   A+D F  M +SGY PD +T+S VI+
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVIS 279

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWD 311
           AC  +  L  G+Q+ + +++ G   +  V    I++++KC+    +  + ++F+Q+   +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 312 YAVINVMISTY-GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
                 MI+ Y  + G+ E AL+LF+ M+   + P  FT S  L +   +  +  G Q  
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           + A+K GF S   VA+SL+ MYA++G ID + + F  L +++L+S+NT++    +N  + 
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L++F E+ ++G+     T A++L      G + KG  + + + +  G+   +     +
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNAL 518

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PS 548
           I +  + G +  A  +   M  +   S W SI+   A +G       +  +M++  + P+
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVIS-WTSIITGFAKHGFATQALELFHKMLEEGVRPN 577

Query: 549 PLPY 552
            + Y
Sbjct: 578 EVTY 581



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 149/303 (49%), Gaps = 37/303 (12%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           HV     ++ S L   C +  +    + +  H  KLGF++   + N  + +Y+R G  DD
Sbjct: 371 HVIPNHFTFSSTL-KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD 429

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             + FD + +KN IS+N  +    K+ N + AL++F+EI +                   
Sbjct: 430 ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIED------------------- 470

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
                       QG+  S FTF+ LLS   ++ +   G+QIH  +I+SGL L+  V  N+
Sbjct: 471 ------------QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC-NA 517

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI MY + G +  AF VF +ME+ ++ISW S+I+G    G+   AL+ F+ M   G  P+
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPN 577

Query: 246 EYTISIVINACTKLRNLDKG-KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           E T   V++AC+ +  +++G K   ++  + G +      +  +D+  +   L ++++  
Sbjct: 578 EVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFI 637

Query: 305 EQL 307
             +
Sbjct: 638 NSM 640



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    A+     M + G  PD  T S+ +  C + R+ D G  V     +     +S+
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            L++ I L+SKC + E +  +F  +    D    + M+S +     G  AL  F  M+  
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAK-TGSID 398
              P E+  +    +      V  G       IK+G+  S+  V   L++M+ K  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           S+ ++F K+ +R+ V+W  ++  L Q G A E +D+F +++  G  PDR TL+ V+ AC
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           L+ + L L++ IR   F +              G+  H    +S    ++V  +SL+ +Y
Sbjct: 66  LQTYSLFLKKCIRTRSFDI--------------GTLVHEKLTQSDLQLDSVTLNSLISLY 111

Query: 392 AKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           +K G  + +T IF  +   RDL+SW+ ++     N      L  F +++E G  P+    
Sbjct: 112 SKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCF 171

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC-IIDLLCQA-GQLGKAIDITST 508
           AA   AC+   FV  G  +F  + +  G +  +    C +ID+  +  G L  A  +   
Sbjct: 172 AAATRACSTAEFVSVGDSIFGFVIKT-GYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 509 MP 510
           MP
Sbjct: 231 MP 232


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 305/531 (57%), Gaps = 6/531 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K+ +++   + F  +   ++ S N+++SG+      D    +  ++ ++G  P+ +TF 
Sbjct: 136 MKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L T +S      GK IHG +I+SG++  +  L NSL+++Y K G   YA  VF  + E
Sbjct: 196 SILKTCASKGDLNEGKAIHGQVIKSGIN-PDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SW +LI+G    GYG   L  F  M   G++P+ YT   ++ +C+ L ++D GKQV
Sbjct: 255 RDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 313

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A  VK     N  V +A +D+++K   LED+  +F +L + D     V+++ Y + G G
Sbjct: 314 HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 373

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E A++ F  M RE ++P EFTL+  LS    I  ++ G Q HSMAIK+G   +  VAS+L
Sbjct: 374 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASAL 433

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G ++ +  +F  L  RD VSWNTI+ G +Q+G+  + L  FE +L+EG  PD 
Sbjct: 434 VDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDE 493

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   VL AC++ G +++G   F+++ + YG+ P  EHYAC++D+L +AG+  +      
Sbjct: 494 VTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIE 553

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            M       IWE++L A  ++G+++  E  A ++ +L+      Y LL+  +A +G W+ 
Sbjct: 554 EMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDD 613

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           +  V+ +M   G+ K  GCSW+ +  +++ F + +  H   ++I+L L+ L
Sbjct: 614 VTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDL 664



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 225/449 (50%), Gaps = 51/449 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S    +  K IHG + K G N  ++L N  +++Y++ G+++   ++F EIP+++
Sbjct: 197 ILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 256

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                                ++I+G+ + GY    L +F++M  
Sbjct: 257 VVSW-------------------------------TALITGFVAEGYGS-GLRIFNQMLA 284

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G  P+ +TF  +L + SS      GKQ+H  ++++ L   N  +G +L+DMY K   L 
Sbjct: 285 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD-GNDFVGTALVDMYAKNRFLE 343

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  + + D+ +W  +++G    G GE A+  F  M+  G  P+E+T++  ++ C+
Sbjct: 344 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 403

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           ++  LD G+Q+ ++++K G   +  V SA +D+++KC  +ED+  +F+ L   D    N 
Sbjct: 404 RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNT 463

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKS 375
           +I  Y ++G G  AL+ F+ ML E   P E T   VLS+   +  +E G + F+S++   
Sbjct: 464 IICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIY 523

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNG------R 427
           G        + ++++  + G      E F++  K   +++ W T++     +G      R
Sbjct: 524 GITPTIEHYACMVDILGRAGKF-HEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGER 582

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLA 456
           AA  + +FE  LE  +  + I L+ +  A
Sbjct: 583 AA--MKLFE--LEPEIDSNYILLSNMFAA 607



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 197/392 (50%), Gaps = 6/392 (1%)

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           W+  +   +K ++L  A +V +E+P  DV  WN  +S   S      A+++F  M+   +
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 144 RPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           R + F F+ L+S  +S     +G+ IH  + + G   S++++ N+ + MY K   +   +
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFE-SDILISNAFVTMYMKTQSVENGW 145

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
             F  M   ++ S N+L+SG  ++   +        +   G+ P+ YT   ++  C    
Sbjct: 146 QFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKG 205

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +L++GK +    +K G   +S + ++ +++++KC     + ++F ++   D      +I+
Sbjct: 206 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALIT 265

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDS 379
            +   G+G   L +F  ML E   P  +T   +L S   +  V+ G Q H+  +K+  D 
Sbjct: 266 GFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 324

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N  V ++L++MYAK   ++ +  IF +L KRDL +W  I+ G  Q+G+  + +  F ++ 
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            EG+ P+  TLA+ L  C+    +D G  + S
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHS 416



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 203/447 (45%), Gaps = 45/447 (10%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K+I   +I++G+   +  L +SL+++Y K   L  A  V   M   D+  WN  +S   N
Sbjct: 9   KKIIFRVIKNGIC-PDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSA-N 66

Query: 224 SGYG-ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           S Y  + A+  FY MR++    +++  + +I+A   L +   G+ + A   K GF S+ +
Sbjct: 67  SPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDIL 126

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           + +A + ++ K   +E+  + F+ +   + A  N ++S +      +    +   +L E 
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 343 IRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
             P  +T   +L +      +  G   H   IKSG + ++ + +SL+ +YAK GS + + 
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYAC 246

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           ++F ++ +RD+VSW  ++ G    G  +  L +F ++L EG  P+  T  ++L +C+   
Sbjct: 247 KVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLS 305

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA-IDITSTMPFQPGCSIWES 520
            VD G  V               H   + + L     +G A +D+ +   F         
Sbjct: 306 DVDLGKQV---------------HAQIVKNSLDGNDFVGTALVDMYAKNRF--------- 341

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
                     ++  E +  R++   L     ++++   YA  G+ E  V+    M++ G+
Sbjct: 342 ----------LEDAETIFNRLIKRDL---FAWTVIVAGYAQDGQGEKAVKCFIQMQREGV 388

Query: 581 --NKVTGCSWIGIKNRIYTFNAGELQH 605
             N+ T  S +   +RI T ++G   H
Sbjct: 389 KPNEFTLASSLSGCSRIATLDSGRQLH 415



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           +SLS CS++        + D  + +H    K G +   ++ +  +D+Y++ G  +D   +
Sbjct: 397 SSLSGCSRI-------ATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVV 449

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYS 128
           FD +  ++ +SWN  + G  +      ALK F    DE   PD V++  ++S  +  G  
Sbjct: 450 FDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 509

Query: 129 DYALEMFSKM-QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           +   + F+ + ++ G+ P+   ++ ++  +  A    ++  S I      SNV++  +++
Sbjct: 510 EEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE-SFIEEMKLTSNVLIWETVL 568

Query: 188 ---DMYGKL 193
               M+G +
Sbjct: 569 GACKMHGNI 577


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 196/643 (30%), Positives = 329/643 (51%), Gaps = 36/643 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S      A  +H  + KLGF   T + N  + +Y + G  D    +F +I +
Sbjct: 150 TSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIER 209

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +   WN  + G  +      AL++F+ +PE D VSWN++IS ++  G+    L MF +M
Sbjct: 210 PSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEM 269

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             QG  P+  T+  +LS  +S      G  +H  ++R   SL ++V GN LIDMY K G 
Sbjct: 270 CNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSL-DLVFGNGLIDMYAKCGC 328

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF ++ E D ISWNSLI+G  + G GE AL  F  MR S    DE+ +  ++  
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGV 388

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS---VRL--------- 303
           C+       G+ +   ++K G  S++ V +A I +++KC   + +    RL         
Sbjct: 389 CSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISW 448

Query: 304 -------------------FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
                              F+ +   +    N M+STY + GF E  L+L+  M    ++
Sbjct: 449 TAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ 508

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T +  + +   +  V+ G Q  + A K G   N  VA+S++ MY++ G I  +   
Sbjct: 509 PDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNT 568

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  +D +DL+SWN ++    QNG   + +D FE++L+    P+ I+  +VL  C++ G V
Sbjct: 569 FDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLV 628

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
            +G   F +M   +G+ P  EH++C++DLL +AG L +A D+   MPF+P  ++W ++L 
Sbjct: 629 AEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLG 688

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
           +  ++ D++L E  A+++M+L +     Y LL+  Y+  G  + +  ++K+M+  GI   
Sbjct: 689 SCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTS 748

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            GCSWI + NR++ F   E  H   +++YL L  +   +ED G
Sbjct: 749 RGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTG 791



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 163/619 (26%), Positives = 277/619 (44%), Gaps = 63/619 (10%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWN 85
            + KS   A+ +H  L   G ++  +L N  L +YS  G + D  Q+F E   +N  +WN
Sbjct: 19  FTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWN 78

Query: 86  ICLRGLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-- 141
             +R L+ S  +  A K+FDE+P    D VSW +MISGY+  G+   + E FS M     
Sbjct: 79  TMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTN 138

Query: 142 --GVRPSGFTFSILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G     F+F+ ++    S    +   Q+H  + + G  +   +  NS++ MY K G +
Sbjct: 139 DGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCI-QNSVVGMYVKCGDV 197

Query: 197 -------------------------------YYAFGVFLNMEELDIISWNSLISGCFNSG 225
                                          Y A  +F  M E D +SWN+LIS     G
Sbjct: 198 DLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHG 257

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
           +G   L  F  M   G+SP+  T   V++AC    +L  G  + A  +++    + +  +
Sbjct: 258 FGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGN 317

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
             ID+++KC  L+ + R+F+ L   D+   N +I+    +G GE AL LF  M R  +  
Sbjct: 318 GLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVL 377

Query: 346 TEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            EF L  +L     P     G   H   IKSG  S+A V ++++ MYAK G  D +  +F
Sbjct: 378 DEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVF 437

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             +  R+ +SW  ++   +++G   +    F+ + E  +    +T  ++L      GF +
Sbjct: 438 RLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNI----VTWNSMLSTYVQNGFSE 493

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG--QLGKAIDITSTMPF--QPGCSIWES 520
           +G+ ++ +M+   GV P    +   I         +LG  + +T    F      S+  S
Sbjct: 494 EGLKLYVSMRSN-GVQPDWITFTTSIRACADLAIVKLGMQV-VTHATKFGLSLNVSVANS 551

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV-----RVKKVM 575
           I+   +  G +K  +N  + + D  L S   ++ +  A+A  G    ++      +K   
Sbjct: 552 IVTMYSRCGLIKEAKNTFDSIDDKDLIS---WNAMLAAFAQNGLGIKVIDTFEDMLKTEC 608

Query: 576 RKNGINKV---TGCSWIGI 591
           + N I+ V   +GCS +G+
Sbjct: 609 KPNHISYVSVLSGCSHMGL 627


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 208/715 (29%), Positives = 353/715 (49%), Gaps = 89/715 (12%)

Query: 10  VNKASLSYCSQLIDRCL-SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           +  A+  Y S L   CL S  S+  A+ +H H+   GF    ++ NR +D+YS+    + 
Sbjct: 7   IRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNY 66

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCG 126
              LFDEIPQ + ++    +     + +L  + K+F + P    D V +N+MI+ Y+   
Sbjct: 67  ARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNH 126

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC----HGKQIHGSMIRSGLSLSNVVL 182
               A+E+F  MQ    RP  +TF+ +L  ++       H +Q+H ++++SG      VL
Sbjct: 127 DGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVL 186

Query: 183 GNSLIDMYGK---------LGVLYYAFGVFLNMEELDIISWNSLISGCFN---------- 223
            N+LI  Y K           ++  A  +F  M   D +SW ++I+G             
Sbjct: 187 -NALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEF 245

Query: 224 ----------------SGYGEL-----ALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
                           SGY        A + F  M  S    DE+T + VI+ C      
Sbjct: 246 LNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCF 305

Query: 263 DKGKQVFALSVKVGFLSNSI------VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             GK++ A  +K   ++N        V +A I  + KC +++ +  +F ++   D    N
Sbjct: 306 RLGKEMHAYFLKT--VANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWN 363

Query: 317 VMISTY-------------------------------GRYGFGEVALELFQLMLREDIRP 345
           +++S Y                                + GF E AL+ F  M  +   P
Sbjct: 364 IILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEP 423

Query: 346 TEFTLS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            ++  +  ++S   +  ++HG Q H+  ++ G++S+    ++L+ MYA+ G +D++  +F
Sbjct: 424 CDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLF 483

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
           + +   D +SWN ++  L Q+G+  + +++FEE+L+EG+ PDRI+   V+ AC++ G V 
Sbjct: 484 INMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVK 543

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +G   F +M   YGV P EEHYA IIDLLC+AG+  +A ++  +MPF+PG  IWE++L  
Sbjct: 544 EGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAG 603

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
             I+G++ L    AER+ +L+      Y LL+  YA+ G+W  + +V+K+MR  G+ K  
Sbjct: 604 CRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEP 663

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVY-LECDKLDVE 638
           GCSWI ++N++++F  G+  H   ++IY  L  L  EM   G V   +C   DVE
Sbjct: 664 GCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVE 718


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 201/602 (33%), Positives = 321/602 (53%), Gaps = 9/602 (1%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K++H    K    + TYL N  ++LYS+ G        F    + N  S+N+ ++   K 
Sbjct: 28  KSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKD 87

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             +  A ++FDEIP+PD VS+N++ISGYA    +  A+ +F +M+  G    GFT S L+
Sbjct: 88  SKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLI 147

Query: 155 STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-DII 212
           +         KQ+H   +  G   S   + N+ +  Y K G+L  A  VF  M+EL D +
Sbjct: 148 AACCDRVDLIKQLHCFSVSGGFD-SYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEV 206

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWNS+I        G  AL  +  M + G+  D +T++ V+NA T L +L  G+Q     
Sbjct: 207 SWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKL 266

Query: 273 VKVGFLSNSIVLSATIDLFSKC---NRLEDSVRLFEQLDRWDYAVINVMISTYG-RYGFG 328
           +K GF  NS V S  ID +SKC   + + DS ++F+++   D  V N MIS Y       
Sbjct: 267 IKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELS 326

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASS 386
           E A++ F+ M R   RP + +  CV S+   +       Q H +AIKS   SN + V ++
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNA 386

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ +Y K+G++  +  +F ++ + + VS+N ++ G  Q+G   E L +++ +L+ G+ P+
Sbjct: 387 LISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPN 446

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
           +IT  AVL AC + G VD+G   F+ MKE + + P  EHY+C+IDLL +AG+L +A    
Sbjct: 447 KITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFI 506

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP++PG   W ++L A   + ++ L E  A  +M +Q  +  PY +L   YA   +WE
Sbjct: 507 DAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWE 566

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  V+K MR   I K  GCSWI +K + + F A +  H   +++   L  +  +M+  G
Sbjct: 567 EMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVG 626

Query: 627 CV 628
            V
Sbjct: 627 YV 628



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 196/427 (45%), Gaps = 54/427 (12%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D  K +H      GF++++ + N  +  YS+ G                           
Sbjct: 155 DLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGL-------------------------- 188

Query: 92  LKSDNLDTALKVFDEIPE-PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                L  A+ VF  + E  D VSWNSMI  Y        AL ++ +M  +G +   FT 
Sbjct: 189 -----LREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTL 243

Query: 151 SILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGVFL 204
           + +L+ ++S  H   G+Q HG +I++G    N  +G+ LID Y K G    +Y +  VF 
Sbjct: 244 ASVLNALTSLDHLIGGRQFHGKLIKAGFH-QNSHVGSGLIDFYSKCGGCDGMYDSEKVFQ 302

Query: 205 NMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            +   D++ WN++ISG   N    E A+  F  M+  G+ PD+ +   V +AC+ L +  
Sbjct: 303 EILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPS 362

Query: 264 KGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           + KQ+  L++K    SN I V +A I L+ K   L+D+  +F+++   +    N MI  Y
Sbjct: 363 QCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGY 422

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSN 380
            ++G G  AL L+Q ML   I P + T   VLS+      V+ G + F++M      +  
Sbjct: 423 AQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPE 482

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM--------MGLTQNGRAAET 431
           A   S ++++  + G ++ +      +  K   V+W  ++        M L +  RAA  
Sbjct: 483 AEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAE--RAANE 540

Query: 432 LDVFEEL 438
           L V + L
Sbjct: 541 LMVMQPL 547


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 304/535 (56%), Gaps = 11/535 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--GVRPSGFTFSILLSTV 157
           A  +FDE+PE + VSW +MISGYAS   +D A E+F  M+ +  G   + F F+ +LS +
Sbjct: 170 ARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSAL 229

Query: 158 SSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           +  C+     G+Q+H   +++GL +  V + N+L+ MY K G L  A   F      + I
Sbjct: 230 T--CYMLVNTGRQVHSLAMKNGL-VCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSI 286

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +W+++++G    G  + AL  FY M  SG  P E+T+  VINAC+    + +G+Q+   S
Sbjct: 287 TWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYS 346

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K+G+     VLSA +D+++KC  + D+ + FE + + D  +   +I+ Y + G  E AL
Sbjct: 347 LKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGAL 406

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            L+  M    + P + T++ VL +   +  ++ G Q H+  IK  F     + S+L  MY
Sbjct: 407 NLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMY 466

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK GS+D    IF ++  RD++SWN ++ GL+QNGR  E L++FE++  EG  PD +T  
Sbjct: 467 AKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFV 526

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L AC++ G VD+G + F  M +E+ + P  EHYAC++D+L +AG+L +A +   +   
Sbjct: 527 NLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATV 586

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
             G  +W  +L AS  + D  L     E++M+L       Y LL+  Y   G+WE + RV
Sbjct: 587 DHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERV 646

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + +M+  G+ K  GCSWI +K+  + F  G+  H    +I L L+LLT  M+DEG
Sbjct: 647 RGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHPQIDEIRLGLKLLTKLMKDEG 701



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 228/454 (50%), Gaps = 43/454 (9%)

Query: 24  RCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
            C   K     + +H  +   G  + T + N  ++LY+                      
Sbjct: 19  HCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYA---------------------- 56

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA---SCGYSDYALEMFSK--M 138
                    K  +   A  VFD I   DVVSWN +I+ ++   +   S + + +F +  M
Sbjct: 57  ---------KCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVM 107

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             + + P+  T + +    ST+S +  G+Q H   +++  S  +V   +SL++MY K G+
Sbjct: 108 AHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACS-HDVFAASSLLNMYCKTGL 166

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY--SGYSPDEYTISIVI 253
           ++ A  +F  M E + +SW ++ISG  +    + A + F  MR+   G + +E+  + V+
Sbjct: 167 VFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVL 226

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +A T    ++ G+QV +L++K G +    V +A + ++ KC  LED+++ FE     +  
Sbjct: 227 SALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSI 286

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMA 372
             + M++ + ++G  + AL+LF  M +    P+EFTL  V+++      +  G Q H  +
Sbjct: 287 TWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYS 346

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K G++    V S+L++MYAK GSI  + + F  + + D+V W +I+ G  QNG     L
Sbjct: 347 LKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGAL 406

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +++ ++   G+ P+ +T+A+VL AC+    +D+G
Sbjct: 407 NLYGKMQLGGVIPNDLTMASVLKACSNLAALDQG 440



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 149/268 (55%), Gaps = 4/268 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  +L+ ALK F+     + ++W++M++G+A  G SD AL++F  M   G  PS FT  
Sbjct: 265 VKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLV 324

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +++  S AC    G+Q+HG  ++ G  L   VL ++L+DMY K G +  A   F  +++
Sbjct: 325 GVINACSDACAIVEGRQMHGYSLKLGYELQLYVL-SALVDMYAKCGSIVDARKGFECIQQ 383

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++ W S+I+G   +G  E AL+ +  M+  G  P++ T++ V+ AC+ L  LD+GKQ+
Sbjct: 384 PDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQM 443

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A  +K  F     + SA   +++KC  L+D  R+F ++   D    N MIS   + G G
Sbjct: 444 HAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRG 503

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSS 356
              LELF+ M  E  +P   T   +LS+
Sbjct: 504 NEGLELFEKMCLEGTKPDNVTFVNLLSA 531



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 188/404 (46%), Gaps = 22/404 (5%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +H  ++ +G S S+  + NSLI++Y K      A  VF ++   D++SWN LI+   
Sbjct: 29  GRALHARILVTG-SFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFS 87

Query: 223 NSGYGELALDQFYSMR-----YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
                  +L   +  R     +    P+ +T++ V  A + L +   G+Q  AL+VK   
Sbjct: 88  QQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTAC 147

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +    S+ ++++ K   + ++  LF+++   +      MIS Y      + A ELF+L
Sbjct: 148 SHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKL 207

Query: 338 MLRED--IRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           M  E+      EF  + VLS++     V  G Q HS+A+K+G      VA++L+ MY K 
Sbjct: 208 MRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKC 267

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           GS++ + + F     ++ ++W+ ++ G  Q G + + L +F ++ + G  P   TL  V+
Sbjct: 268 GSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVI 327

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITSTMP 510
            AC+     D   +V       Y +  G E      + ++D+  + G +  A      + 
Sbjct: 328 NACS-----DACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQ 382

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
            QP   +W SI+      GD +   N+  +M   QL   +P  L
Sbjct: 383 -QPDVVLWTSIITGYVQNGDYEGALNLYGKM---QLGGVIPNDL 422



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 137/289 (47%), Gaps = 36/289 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C    +    + +HG+  KLG+    Y+ +  +D+Y++ G+  D  + F+ I Q +
Sbjct: 326 VINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPD 385

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + W                                S+I+GY   G  + AL ++ KMQL
Sbjct: 386 VVLW-------------------------------TSIITGYVQNGDYEGALNLYGKMQL 414

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P+  T + +L   S +++   GKQ+H  +I+   SL  + +G++L  MY K G L 
Sbjct: 415 GGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLE-IPIGSALSAMYAKCGSLD 473

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
             + +F  M   D+ISWN++ISG   +G G   L+ F  M   G  PD  T   +++AC+
Sbjct: 474 DGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACS 533

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFE 305
            +  +D+G   F +      ++ ++   A  +D+ S+  +L ++    E
Sbjct: 534 HMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIE 582



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT+ + L KG+ + A  +  G  S++ + ++ I+L++KC+    +  +F+ ++  D    
Sbjct: 20  CTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSW 79

Query: 316 NVMISTYGRYGFGEVALELFQL-----MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           N +I+ + +      +L +  L     M  + I P   TL+ V ++   +     G Q H
Sbjct: 80  NCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAH 139

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           ++A+K+    +   ASSL+ MY KTG +  + ++F ++ +R+ VSW T++ G      A 
Sbjct: 140 ALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELAD 199

Query: 430 ETLDVFEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHY 486
           E  ++F+ +   E+G   +     +VL A      V+ G  V S AMK   G++      
Sbjct: 200 EAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKN--GLVCIVSVA 257

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
             ++ +  + G L  A+  T  +        W +++   A +GD   ++   +   D+  
Sbjct: 258 NALVTMYVKCGSLEDALK-TFELSGNKNSITWSAMVTGFAQFGD---SDKALKLFYDMHQ 313

Query: 547 PSPLP 551
              LP
Sbjct: 314 SGELP 318



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 31/140 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  + D  K +H  + K  F+    +G+    +Y++ G+ DD          
Sbjct: 425 ASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDD---------- 474

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                  ++F  +P  DV+SWN+MISG +  G  +  LE+F KM
Sbjct: 475 ---------------------GYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKM 513

Query: 139 QLQGVRPSGFTFSILLSTVS 158
            L+G +P   TF  LLS  S
Sbjct: 514 CLEGTKPDNVTFVNLLSACS 533


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 309/541 (57%), Gaps = 8/541 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A K+F+ +   D+VSW ++++GYA  G++  AL++  +MQ  G +P   T   
Sbjct: 192 KCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVS 251

Query: 153 LLSTVSSACH---GKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           +L  V+       G+ IHG   RSG  SL NV   N+L+DMY K G    A  VF  M  
Sbjct: 252 ILPAVADMKALRIGRSIHGYAFRSGFESLVNVT--NALLDMYFKCGSARIARLVFKGMRS 309

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             ++SWN++I GC  +G  E A   F  M   G  P   T+  V+ AC  L +L++G  V
Sbjct: 310 KTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFV 369

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
             L  K+   SN  V+++ I ++SKC R++ +  +F  L++ +    N MI  Y + G  
Sbjct: 370 HKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCV 428

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSL 387
           + AL LF +M  + I+   FTL  V++++    V   +++ H +A+++  D+N  V+++L
Sbjct: 429 KEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTAL 488

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G+I ++ ++F  + +R +++WN ++ G   +G   ETLD+F E+ +  + P+ 
Sbjct: 489 VDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPND 548

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           IT  +V+ AC++ GFV++G+L+F +M+E+Y + P  +HY+ ++DLL +AGQL  A +   
Sbjct: 549 ITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQ 608

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +PG S+  ++L A  I+ +V+L E  A+++  L       + LL   YA    W+ 
Sbjct: 609 EMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDK 668

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
           + +V+  M   G++K  GCSW+ ++N I+TF +G   H   +KIY  L  L  E++  G 
Sbjct: 669 VAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGY 728

Query: 628 V 628
           V
Sbjct: 729 V 729



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 176/361 (48%), Gaps = 6/361 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VF+ +     V ++ M+ GYA       AL  F +M    VR     ++ LL     
Sbjct: 98  AARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGE 157

Query: 160 AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G++IHG +I +G   SN+ +  +++ +Y K   +  A+ +F  M+  D++SW +
Sbjct: 158 NLDLKKGREIHGLIITNGFE-SNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTT 216

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           L++G   +G+ + AL     M+ +G  PD  T+  ++ A   ++ L  G+ +   + + G
Sbjct: 217 LVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG 276

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F S   V +A +D++ KC     +  +F+ +        N MI    + G  E A   F 
Sbjct: 277 FESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL 336

Query: 337 LMLREDIRPTEFTLSCV-LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            ML E   PT  T+  V L+   +  +E G   H +  K   DSN  V +SL+ MY+K  
Sbjct: 337 KMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCK 396

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +D +  IF  L+K + V+WN +++G  QNG   E L++F  +  +G+  D  TL  V+ 
Sbjct: 397 RVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 456 A 456
           A
Sbjct: 456 A 456



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 74/352 (21%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           K+    ++IHG+ F+ GF +   + N  LD+Y + G++     +F  +  K  +SWN  +
Sbjct: 260 KALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMI 319

Query: 89  RGLLKS----DNLDTALKVFDEIPEPDVVS-----------------W------------ 115
            G  ++    +   T LK+ DE   P  V+                 W            
Sbjct: 320 DGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLD 379

Query: 116 ------NSMISGYASC-------------------------GYSDY-----ALEMFSKMQ 139
                 NS+IS Y+ C                         GY+       AL +F  MQ
Sbjct: 380 SNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQ 439

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            QG++   FT   +++ ++     +Q   IHG  +R+ +  +NV +  +L+DMY K G +
Sbjct: 440 SQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMD-NNVFVSTALVDMYAKCGAI 498

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  M+E  +I+WN++I G    G G+  LD F  M+     P++ T   VI+AC
Sbjct: 499 KTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISAC 558

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +++G  +F    +  +L  ++   SA +DL  +  +L+D+    +++
Sbjct: 559 SHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEM 610



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 4/207 (1%)

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           +++  CT  + L    Q+    +K GF +  +  +  I LF K     ++ R+FE ++  
Sbjct: 52  VLLENCTSKKEL---YQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELK 108

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFH 369
              + ++M+  Y +      AL  F  M+ +++R      +C+L        ++ G + H
Sbjct: 109 LDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIH 168

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
            + I +GF+SN  V +++M +YAK   ID++ ++F ++  +DLVSW T++ G  QNG A 
Sbjct: 169 GLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAK 228

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLA 456
             L +  ++ E G  PD +TL ++L A
Sbjct: 229 RALQLVLQMQEAGQKPDSVTLVSILPA 255


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/702 (29%), Positives = 345/702 (49%), Gaps = 84/702 (11%)

Query: 8   AHVNKASLSYCSQLIDRCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           A+V + +  Y +QL   C     S+  A+T+H H+   GF    Y+ NR +D+Y +    
Sbjct: 7   ANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDL 66

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE--PDVVSWNSMISGYAS 124
                LFDEI Q + ++    +     + N + A ++F   P    D V +N+MI+GY+ 
Sbjct: 67  VSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSH 126

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNV 180
                 A+E+F  +   G RP  FTF+ +L      V      +QIH ++++SG      
Sbjct: 127 NNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTS 186

Query: 181 VLGNSLIDMYGKLGV---------LYYAFGVFLNMEELD--------------------- 210
           VL N+L+ ++ K            +  A  +F  M E D                     
Sbjct: 187 VL-NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAAR 245

Query: 211 ----------IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
                     +++WN++ISG  + G+   AL+ F  M   G   DE+T + V++AC    
Sbjct: 246 QFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAG 305

Query: 261 NLDKGKQV--------------FALSV---------KVGFLSNS------------IVLS 285
               GKQV              F+LSV         K G +  +            +  +
Sbjct: 306 FFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWN 365

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A +  +    R++++   FE++   +     VMIS   + GFGE +L+LF  M  E   P
Sbjct: 366 AILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEP 425

Query: 346 TEFTLS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            ++  +  +++   +  + HG Q H+  ++ GFDS+    ++L+ MYAK G ++++  +F
Sbjct: 426 CDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLF 485

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
           + +   D VSWN ++  L Q+G  A+ L++FE +L+E + PDRIT   VL  C++ G V+
Sbjct: 486 LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVE 545

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +G   F +M   YG+ PGE+HYA +IDLLC+AG+  +A D+  TMP +PG  IWE++L  
Sbjct: 546 EGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAG 605

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
             I+G++ L    AER+ +L       Y LL+  YA  GRW+ + +V+K+MR  G+ K  
Sbjct: 606 CRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEP 665

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           GCSWI ++N+++ F   ++ H   Q +Y  L  L  +M   G
Sbjct: 666 GCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLG 707


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 293/537 (54%), Gaps = 5/537 (0%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K   ++   +VF+++   +VVSW ++I+G    GY+   L  FS+M    V     TF+
Sbjct: 170 MKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFA 229

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           I L   + +    HGK IH   I+ G   S+ V+ N+L  MY K G   Y   +F  M  
Sbjct: 230 IALKASADSSLLHHGKAIHTQTIKQGFDESSFVI-NTLATMYNKCGKPDYVMRLFEKMRM 288

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SW +LIS     G  E A++ F  MR S  SP++YT + VI++C  L     G+Q+
Sbjct: 289 PDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQI 348

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +++G ++   V ++ I L+SKC  L+ +  +F  + R D    + +IS Y + G+ 
Sbjct: 349 HGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYA 408

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + A +    M RE  +P EF LS VLS    +  +E G Q H+  +  G D  A+V S++
Sbjct: 409 KEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAI 468

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY+K GS+  +++IF  +   D++SW  ++ G  ++G + E +++FE++   GL PD 
Sbjct: 469 ISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDY 528

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +    VL ACN+ G VD G   F  M   Y + P +EHY C+IDLLC+AG+L +A  I  
Sbjct: 529 VMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIR 588

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           +MPF     +W ++LRA  ++GDV      AE+++ L   S   +  L   YA +GRW+ 
Sbjct: 589 SMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKE 648

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
              ++K+M+  G+ K  G SW+ + +++  F AG+  H   + I  VL+LL+  + D
Sbjct: 649 AAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVLKLLSANIGD 705



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/521 (27%), Positives = 261/521 (50%), Gaps = 22/521 (4%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS------WNICLRGLLKS 94
           L+K    A  Y+ NR +   +     + + Q   E P +N  S       N  L+ L+K 
Sbjct: 11  LYKETRVALHYISNRYILTGTATECRELIQQPIQEQPAENAYSVHNMLELNSELKQLVKQ 70

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSIL 153
             L  A  +FD++   D +SW ++I+GY +   S  AL +FS M +  G +   F  S+ 
Sbjct: 71  GQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVA 130

Query: 154 LSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   +   + C G+ +HG  ++SGL + +V + ++LIDMY K+G +     VF  M   +
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGL-IHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRN 189

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SW ++I+G  ++GY    L  F  M  S    D +T +I + A      L  GK +  
Sbjct: 190 VVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHT 249

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            ++K GF  +S V++    +++KC + +  +RLFE++   D      +ISTY + G  E 
Sbjct: 250 QTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEH 309

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+E F+ M +  + P ++T + V+SS   +   + G Q H   ++ G  +   VA+S++ 
Sbjct: 310 AVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIIT 369

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           +Y+K G + S++ +F  + ++D++SW+TI+   +Q G A E  D    +  EG  P+   
Sbjct: 370 LYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFA 429

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDI 505
           L++VL  C     +++G  V + +     +  G +H    ++ II +  + G + +A  I
Sbjct: 430 LSSVLSVCGSMALLEQGKQVHAHL-----LCIGIDHEAMVHSAIISMYSKCGSVQEASKI 484

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            + M      S W +++   A +G  +   N+ E++  + L
Sbjct: 485 FNGMKINDIIS-WTAMINGYAEHGYSQEAINLFEKISSVGL 524



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 37/307 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++K++V+    ++ + +I  C +  +  + + IHGH+ +LG      + N  + LYS+ G
Sbjct: 317 MRKSYVSPNKYTFAA-VISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCG 375

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                     LLKS +L     VF  I   D++SW+++IS Y+ 
Sbjct: 376 --------------------------LLKSASL-----VFHGITRKDIISWSTIISVYSQ 404

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            GY+  A +  S M+ +G +P+ F  S +LS   S      GKQ+H  ++  G+     +
Sbjct: 405 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGID-HEAM 463

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + +++I MY K G +  A  +F  M+  DIISW ++I+G    GY + A++ F  +   G
Sbjct: 464 VHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVG 523

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDS 300
             PD      V+ AC     +D G   F L   V  +S S       IDL  +  RL ++
Sbjct: 524 LKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEA 583

Query: 301 VRLFEQL 307
             +   +
Sbjct: 584 EHIIRSM 590



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 51/219 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S    +  K +H HL  +G +    + +  + +YS+ G+  +  ++F+ +  
Sbjct: 431 SSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKI 490

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + ISW                                +MI+GYA  GYS  A+ +F K+
Sbjct: 491 NDIISW-------------------------------TAMINGYAEHGYSQEAINLFEKI 519

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG----LSLSNVVLGNS-------LI 187
              G++P    F  +L    +AC+    H  M+  G    + ++NV   +        LI
Sbjct: 520 SSVGLKPDYVMFIGVL----TACN----HAGMVDLGFYYFMLMTNVYRISPSKEHYGCLI 571

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSG 225
           D+  + G L  A  +  +M    D + W++L+  C   G
Sbjct: 572 DLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHG 610


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 213/639 (33%), Positives = 327/639 (51%), Gaps = 90/639 (14%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
           GF ++ ++GN  + +YSR G+  D                               A KVF
Sbjct: 157 GFMSNVFVGNALVAMYSRCGSLSD-------------------------------ARKVF 185

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILL---STVSSA 160
           DE+P  DVVSWNS+I  YA  G    ALEMFSKM  + G RP   T   +L   ++V + 
Sbjct: 186 DEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTR 245

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL--- 217
             GKQ HG  + S + + N+ +GN L+DMY K G++  A  VF NM   D++SWN++   
Sbjct: 246 SLGKQFHGFAVTSEM-IQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 218 --------------------------------ISGCFNSGYGELALDQFYSMRYSGYSPD 245
                                           ISG    G G  AL     M  SG  P+
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKV-------GFLSNSIVLSATIDLFSKCNRLE 298
           E T+  V++ C  +  L  GK++   ++K        G    ++V++  ID+++KC +++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 299 DSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVL 354
            +  +F+ L   +  V+   VMI  Y ++G    ALEL   M  ED   RP  FT+SC L
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 355 -SSIPIPPVEHGSQFHSMAIKSGFDSNAV---VASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            +   +  +  G Q H+ A+++    NAV   V++ L++MYAK G I  +  +F  + ++
Sbjct: 485 VACASLAALSIGKQIHAYALRN--QQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEK 542

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           + V+W ++M G   +G   E L +FEE+   G   D +TL  VL AC++ G +D+GM  F
Sbjct: 543 NEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
           + MK ++GV PG EHYAC++DLL +AG+L  A+ +   MP +P   +W ++L    I+G 
Sbjct: 603 NRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGK 662

Query: 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI- 589
           V+L E  A+++ +L   +   Y+LL+  YA  GRW+ + R++ +MR  GI K  GCSW+ 
Sbjct: 663 VELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVE 722

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           GIK    TF  G+  H   ++IY VL      ++D G V
Sbjct: 723 GIKGTT-TFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYV 760



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 218/487 (44%), Gaps = 57/487 (11%)

Query: 97  LDTALKVFDEIPEPD--VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           L  A+ +    P  D  V  WNS+I  Y + G ++  L  F  M      P  +TF  + 
Sbjct: 75  LSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVF 134

Query: 155 ST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                +SS   G   H     +G  +SNV +GN+L+ MY + G L  A  VF  M   D+
Sbjct: 135 KACGEISSVRCGDSSHALSRVTGF-MSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDV 193

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +SWNS+I      G  ++AL+ F  M    G+ PD+ T+  V+  C  +     GKQ   
Sbjct: 194 VSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHG 253

Query: 271 LSVKVGFLSNSIVLSATIDLFSK-------------------------------CNRLED 299
            +V    + N  V +  +D+++K                                 R ED
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFED 313

Query: 300 SVRLFEQLD----RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           +VRLFEQ+     + D    +  IS Y + G G  AL + + ML   I+P E TL  VLS
Sbjct: 314 AVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 356 SIP-IPPVEHGSQFHSMAI-------KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
               +  + HG + H  AI       K+G     +V + L++MYAK   +D +  +F  L
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSL 433

Query: 408 D--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP--PDRITLAAVLLACNYGGFV 463
              +RD+V+W  ++ G +Q+G A + L++  E+ EE     P+  T++  L+AC     +
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493

Query: 464 DKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             G  + + A++ +   +P      C+ID+  + G +G A  +   M  +     W S++
Sbjct: 494 SIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLM 551

Query: 523 RASAIYG 529
               ++G
Sbjct: 552 TGYGMHG 558



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 158/313 (50%), Gaps = 21/313 (6%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD--IISWNSLISGC 221
           K IH  ++  G+   N  L + LI  Y  LG L +A  +       D  +  WNSLI   
Sbjct: 45  KLIHQKLLSFGILTLN--LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY 102

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            N+G     L  F  M    ++PD YT   V  AC ++ ++  G    ALS   GF+SN 
Sbjct: 103 GNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNV 162

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A + ++S+C  L D+ ++F+++  WD    N +I +Y + G  ++ALE+F  M  E
Sbjct: 163 FVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNE 222

Query: 342 -DIRPTEFTLSCVLSSIPIPPVEH------GSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
              RP + TL  VL     PP         G QFH  A+ S    N  V + L++MYAK 
Sbjct: 223 FGFRPDDITLVNVL-----PPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKF 277

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +D +  +F  +  +D+VSWN ++ G +Q GR  + + +FE++ EE +  D +T +A +
Sbjct: 278 GMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAI 337

Query: 455 LACNYGGFVDKGM 467
                 G+  +G+
Sbjct: 338 -----SGYAQRGL 345



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 138/536 (25%), Positives = 236/536 (44%), Gaps = 79/536 (14%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            ++  C S  +    K  HG         + ++GN  +D+Y++FG  D+   +F  +P K
Sbjct: 234 NVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVK 293

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEP----DVVSWNSMISGYASCGYSDYALEMF 135
           + +SWN  + G  +    + A+++F+++ E     DVV+W++ ISGYA  G    AL + 
Sbjct: 294 DVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVC 353

Query: 136 SKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSL-------SNVVLGNS 185
            +M   G++P+  T   +LS   +V +  HGK+IH   I+  + L        N+V+ N 
Sbjct: 354 RQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI-NQ 412

Query: 186 LIDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSGYGELALDQFYSM--RYSG 241
           LIDMY K   +  A  +F  L+ +E D+++W  +I G    G    AL+    M      
Sbjct: 413 LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG------FLSNSIVLSATIDLFSKCN 295
             P+ +TIS  + AC  L  L  GKQ+ A +++        F+SN +     ID+++KC 
Sbjct: 473 TRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCL-----IDMYAKCG 527

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            + D+  +F+ +   +      +++ YG +G+GE AL +F+ M R               
Sbjct: 528 DIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRR--------------- 572

Query: 356 SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS- 414
                               GF  + V    ++   + +G ID   E F ++     VS 
Sbjct: 573 -------------------IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSP 613

Query: 415 ----WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
               +  ++  L + GR    L + EE+  E   P  +   A+L  C   G V+ G   +
Sbjct: 614 GPEHYACLVDLLGRAGRLNAALRLIEEMPME---PPPVVWVALLSCCRIHGKVELGE--Y 668

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ-----PGCSIWESI 521
           +A K        +  Y  + ++   AG+      I S M  +     PGCS  E I
Sbjct: 669 AAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGI 724


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 209/685 (30%), Positives = 344/685 (50%), Gaps = 71/685 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S  + + ++   +  K     +++H  + K G +   YL N  +  Y++ G+      +F
Sbjct: 9   SSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           DE+P K+  SWN  + G  K  N + + ++  E+P+ D VSW ++I GY   G  D A+ 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           MF+KM  + V PS FT S +LS+ ++      G++IH  +++ GL  S V +  SL++MY
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLG-SCVPVATSLLNMY 187

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM----------RYS 240
            K G    A  VF  M   +I +WN+LIS    SG  ELA  QF  M            S
Sbjct: 188 AKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 241 GYS----------------------PDEYTISIVINACTKLRNLDKGKQVFALSVKV--- 275
           GYS                      PD +T++ +++AC  L  L+ GKQ+ A  ++    
Sbjct: 248 GYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETE 307

Query: 276 --GFLSNS----------------------------IVLSATIDLFSKCNRLEDSVRLFE 305
             G + N+                            I  ++ +D ++K   ++ +  +F 
Sbjct: 308 TSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEH 364
           +L   D      MI  Y + G    ALELF+LM+ E   P  +TL+ +LS S  +  +EH
Sbjct: 368 KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEH 427

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLT 423
           G Q H+ AIK+G  S   V ++L+ MYAKTG+I+ +  +F +   K+++VSW +++M L 
Sbjct: 428 GKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALA 487

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           Q+G   E +++FE +L  G+ PD IT   VL AC + G V++G   ++ M E + + P  
Sbjct: 488 QHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTL 547

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            HYAC+IDL  +AG L +A     +MP +P    W S+L +  I+ +  L +  AER++ 
Sbjct: 548 SHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLL 607

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           +   +   Y  L   Y+  G+WE   + +K+M+  G+ K  G SWI IKN ++ F   ++
Sbjct: 608 IDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDV 667

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H    +IY ++  +  E++  G +
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFI 692


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 203/684 (29%), Positives = 341/684 (49%), Gaps = 69/684 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S  + + ++   +  K     +++H  + K G +   YL N  +  Y++ G+      +F
Sbjct: 9   SSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           DE+P K+  SWN  + G  K  N + + ++  E+P+ D VSW ++I GY   G  D A+ 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGL--------------- 175
           MF+KM  + V PS FT S +LS+ ++      G++IH  +++ GL               
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 176 ---------------SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
                          ++ N+   N+LI +Y + G    A   F  M + DI+SWNS+ISG
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISG 248

Query: 221 CFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV---- 275
               GY   AL  F  M       PD +T++ +++AC  L  L+ GKQ+ A  ++     
Sbjct: 249 YSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETET 308

Query: 276 -GFLSNS----------------------------IVLSATIDLFSKCNRLEDSVRLFEQ 306
            G + N+                            I  ++ +D ++K   ++ +  +F +
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHG 365
           L   D      MI  Y + G    ALELF+LM+ E   P  +TL+ +LS S  +  +EHG
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQ 424
            Q H+ AIK+G  S   V ++L+ MYAKTG+I+ +  +F +   K+++VSW +++M L Q
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   E +++FE +L  G+ PD IT   VL AC + G V++G   ++ M E + + P   
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC+IDL  +AG L +A     +MP +P    W S+L +  I+ +  L +  AER++ +
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLI 608

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
              +   Y  L   Y+  G+WE   + +K+M+  G+ K  G SWI IKN ++ F   ++ 
Sbjct: 609 DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVI 668

Query: 605 HHGGQKIYLVLRLLTWEMEDEGCV 628
           H    +IY ++  +  E++  G +
Sbjct: 669 HPQKDEIYKLMAEIWEEIKKMGFI 692


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/671 (28%), Positives = 344/671 (51%), Gaps = 75/671 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C     F+  + +H  ++K G  + T +GN  + LY RFG+     ++F E+P 
Sbjct: 147 SSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY 206

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI------PE----------------------- 109
            + +++N  +    +  N ++AL++F+E+      P+                       
Sbjct: 207 CDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQL 266

Query: 110 ----------PDVVSWNSMISGYASCGYSDYALEMFS----------------------- 136
                     PD +   S++  Y  CG    ALE+F                        
Sbjct: 267 HSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL 326

Query: 137 --------KMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
                   +M   GVRP+ FT+  LL T + A     G+QIH   I++G   S++ +   
Sbjct: 327 AKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFE-SDMYVSGV 385

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K G L  A  +   +E  D++SW S+I+G     + + AL+ F  M+  G  PD
Sbjct: 386 LIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPD 445

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
              ++  I+AC  ++ + +G+Q+ +     G+ ++  + +A ++L+++C R +++  LFE
Sbjct: 446 NIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFE 505

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEH 364
            ++  D    N M+S + + G  E ALE+F  M +  ++   FT +S + +S  +  ++ 
Sbjct: 506 AIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQ 565

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK+G  S   VA++L+ +Y K GSI+ +   F ++ +R+ VSWNTI+   +Q
Sbjct: 566 GKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQ 625

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   E LD+F+++ +EGL P+ +T   VL AC++ G V++G+  F +M  E+G+ P  +
Sbjct: 626 HGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPD 685

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC++D+L +AGQL +A      MP      +W ++L A  ++ ++++ E  A+ +++L
Sbjct: 686 HYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLEL 745

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+ AYA+ G+W     V+K+M+  G+ K  G SWI +KN ++ F  G+  
Sbjct: 746 EPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805

Query: 605 HHGGQKIYLVL 615
           H    +IY  L
Sbjct: 806 HPLAHQIYKYL 816



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 229/435 (52%), Gaps = 36/435 (8%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S K +     IH      G       GN  +DLY++                        
Sbjct: 54  SVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAK------------------------ 89

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
             +GL++      A +VF+++   D VSW +M+SGYA  G  + A+ ++ +M   GV P+
Sbjct: 90  --KGLVQR-----ARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142

Query: 147 GFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            +  S +LS  + A     G+ +H  + + G S S  V+GN+LI +Y + G L  A  VF
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQG-SCSETVVGNALIALYLRFGSLSLAERVF 201

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   D +++N+LIS     G GE AL+ F  MR SG++PD  TI+ ++ AC  + +L+
Sbjct: 202 SEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLN 261

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           KGKQ+ +  +K G   + I+  + +DL+ KC  + +++ +F+  DR +  + N+M+  YG
Sbjct: 262 KGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYG 321

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAV 382
           +      + +LF  M+   +RP EFT  C+L +      +  G Q H ++IK+GF+S+  
Sbjct: 322 QISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMY 381

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V+  L++MY+K G +D +  I   L+ +D+VSW +++ G  Q+    E L+ F+++   G
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG 441

Query: 443 LPPDRITLAAVLLAC 457
           + PD I LA+ + AC
Sbjct: 442 IWPDNIGLASAISAC 456



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 193/387 (49%), Gaps = 7/387 (1%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           IH   I  GL   + + GN LID+Y K G++  A  VF  +   D +SW +++SG   +G
Sbjct: 64  IHAKAITCGLG-EDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
            GE A+  ++ M  SG  P  Y +S V++ACTK    ++G+ V A   K G  S ++V +
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A I L+ +   L  + R+F ++   D    N +IS + + G GE ALE+F+ M      P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
              T++ +L++   I  +  G Q HS  +K+G   + ++  SL+++Y K G I  + EIF
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
              D+ ++V WN +++   Q    A++ D+F +++  G+ P+  T   +L  C Y G ++
Sbjct: 303 KSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
            G  +   +  + G          +ID+  + G L KA  I   +  +   S W S++  
Sbjct: 363 LGEQI-HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS-WTSMI-- 418

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLP 551
            A Y   +  +   E   D+QL    P
Sbjct: 419 -AGYVQHEFCKEALETFKDMQLFGIWP 444


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/668 (28%), Positives = 341/668 (51%), Gaps = 75/668 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT------------- 65
           S ++  C   + F   + +HG + K G ++ T++ N  + LYSR+G              
Sbjct: 217 SSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHR 276

Query: 66  ------------------SDDVLQLFDEIP----QKNCI--------------------- 82
                             SD  LQLF+++     + +C+                     
Sbjct: 277 RDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQL 336

Query: 83  ---------SWNICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                    S ++ + G L     K  +++TA + F      +VV WN M+  Y   G  
Sbjct: 337 HSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNL 396

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
             +  +F +MQ++G+ P+ +T+  +L T +S      G+QIH  +I+SG    NV + + 
Sbjct: 397 SESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQF-NVYVCSV 455

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K G L  A G+   + E D++SW ++I+G         AL  F  M   G   D
Sbjct: 456 LIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSD 515

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
               S  I+AC  ++ L++G+Q+ A S   G+  +  + +A + L+++C R +D+   FE
Sbjct: 516 NIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFE 575

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEH 364
           ++D  D    N +IS + + G  E AL++F  M +  +    FT  S V ++     ++ 
Sbjct: 576 KIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQ 635

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+M IK+G+DS    ++ L+ +Y+K GSI+ +   F ++ ++++VSWN ++ G +Q
Sbjct: 636 GKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQ 695

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G  +E + +FEE+ + GL P+ +T   VL AC++ G V++G+  F +M +E+G++P  E
Sbjct: 696 HGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPE 755

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C++DLL +A  L  A +    MP +P   IW ++L A  ++ ++++ E  A  +++L
Sbjct: 756 HYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLEL 815

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+  YA+ G+W+   R +++M+  G+ K  G SWI +KN I+ F  G+  
Sbjct: 816 EPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRL 875

Query: 605 HHGGQKIY 612
           H   ++IY
Sbjct: 876 HPLAEQIY 883



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/499 (29%), Positives = 242/499 (48%), Gaps = 56/499 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L + C +  S   AK +H  +FK GF+    LG+R +D+Y                    
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIY-------------------- 55

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                      L    +D A+K+FD+IP  +V  WN +ISG  +   +   L +FS M  
Sbjct: 56  -----------LAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMIT 104

Query: 141 QGVRPSGFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           + V P   TF+    +V  AC G        +QIH  +I  G   S +V  N LID+Y K
Sbjct: 105 ENVTPDESTFA----SVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVC-NPLIDLYSK 159

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  VF  +   D +SW ++ISG   +G  + A+  F  M  S   P  Y  S V
Sbjct: 160 NGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSV 219

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++ACTK+     G+Q+    VK G  S + V +A + L+S+   L  + ++F ++ R D 
Sbjct: 220 LSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDR 279

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N +IS   + GF + AL+LF+ M  + ++P   T++ +LS+   +     G Q HS 
Sbjct: 280 ISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSY 339

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            IK G  S+ ++  SL+++Y K   I+++ E F+  +  ++V WN +++   Q G  +E+
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYAC 488
             +F ++  EGL P++ T  ++L  C   G +D G  + + + +   ++ V      Y C
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV------YVC 453

Query: 489 --IIDLLCQAGQLGKAIDI 505
             +ID+  + G+L  A  I
Sbjct: 454 SVLIDMYAKHGELDTARGI 472



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 2/223 (0%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M   G   +  T   +   C    +L   K++ A   K GF    ++ S  ID++     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           ++++++LF+ +   + +  N +IS           L LF LM+ E++ P E T + VL +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 357 IP--IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                 P +   Q H+  I  GF S+ +V + L+++Y+K G +D +  +F +L  +D VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           W  ++ GL+QNGR  E + +F ++ +  + P     ++VL AC
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSAC 223


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 187/615 (30%), Positives = 323/615 (52%), Gaps = 42/615 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S    ++ + IH  + + G    T +GN  + +Y++ G+  D            
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRD------------ 182

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A +VFD +   D VSW ++   YA  GY + +L+ +  M  
Sbjct: 183 -------------------ARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ 223

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + VRPS  T+  +LS   S      GKQIH  ++ S    S+V +  +L  MY K G   
Sbjct: 224 ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH-SDVRVSTALTKMYMKCGAFK 282

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   D+I+WN++I G  +SG  E A   F+ M   G +PD  T + V++AC 
Sbjct: 283 DAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACA 342

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +   L +GK++ A + K G +S+    +A I+++SK   ++D+ ++F+++ + D      
Sbjct: 343 RPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTT 402

Query: 318 MISTYGRYGFGEVALE---LFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAI 373
           ++   GRY   +  +E    F+ ML++ ++  + T  CVL +   P  ++ G + H+  +
Sbjct: 403 LL---GRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVV 459

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+G  ++  V ++LM MY K GS++ +  +F  +  RD+V+WNT++ GL QNGR  E L 
Sbjct: 460 KAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQ 519

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            +E +  EG+ P+  T   VL AC     V++G   F+ M ++YG++P E+HYAC++D+L
Sbjct: 520 RYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDIL 579

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A D+  T+P +P  ++W ++L A  I+ +V++ E  AE  + L+  +   Y 
Sbjct: 580 ARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYV 639

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
            L+  YA  G W  + +++K M++ G+ K  G SWI I   +++F A +  H   Q+IY 
Sbjct: 640 SLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYA 699

Query: 614 VLRLLTWEMEDEGCV 628
            L  L  +M+  G V
Sbjct: 700 ELETLKKQMKSLGYV 714



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 36/443 (8%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L+  C+  K     K +H H+ + G   + Y+ N  L LY+  G+ ++  QLFD+   K
Sbjct: 33  KLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNK 92

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           +                               VVSWN MISGYA  G +  A  +F+ MQ
Sbjct: 93  S-------------------------------VVSWNVMISGYAHRGLAQEAFNLFTLMQ 121

Query: 140 LQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            + + P  FTF  +LS  SS      G++IH  ++ +GL+ ++  +GN+LI MY K G +
Sbjct: 122 QERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLA-NDTTVGNALISMYAKCGSV 180

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  M   D +SW +L      SGYGE +L  +++M      P   T   V++AC
Sbjct: 181 RDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSAC 240

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             L  L+KGKQ+ A  V+  + S+  V +A   ++ KC   +D+  +FE L   D    N
Sbjct: 241 GSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWN 300

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
            MI  +   G  E A   F  ML E + P   T + VLS+   P  +  G + H+ A K 
Sbjct: 301 TMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD 360

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G  S+    ++L+ MY+K GS+  + ++F ++ KRD+VSW T++       +  E+   F
Sbjct: 361 GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTF 420

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
           +++L++G+  ++IT   VL AC+
Sbjct: 421 KQMLQQGVKANKITYMCVLKACS 443



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 193/361 (53%), Gaps = 4/361 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GKQ+H  ++R G+   NV + N+L+ +Y   G +  A  +F       ++SWN +ISG  
Sbjct: 47  GKQVHEHILRCGVK-PNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYA 105

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           + G  + A + F  M+     PD++T   +++AC+    L+ G+++    ++ G  +++ 
Sbjct: 106 HRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT 165

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A I +++KC  + D+ R+F+ +   D      +   Y   G+GE +L+ +  ML+E 
Sbjct: 166 VGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQER 225

Query: 343 IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +RP+  T   VLS+   +  +E G Q H+  ++S + S+  V+++L +MY K G+   + 
Sbjct: 226 VRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAR 285

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F  L  RD+++WNT++ G   +G+  E    F  +LEEG+ PDR T   VL AC   G
Sbjct: 286 EVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPG 345

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            + +G  + +   ++ G++        +I++  +AG +  A  +   MP +   S W ++
Sbjct: 346 GLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVS-WTTL 403

Query: 522 L 522
           L
Sbjct: 404 L 404



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 191/417 (45%), Gaps = 41/417 (9%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V  + ++Y + ++  C S  + +  K IH H+ +  +++   +      +Y + G   D 
Sbjct: 226 VRPSRITYMN-VLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDA 284

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASC 125
            ++F+ +  ++ I+WN  +RG + S  L+ A   F  + E    PD  ++ +++S  A  
Sbjct: 285 REVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACA-- 342

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
                             RP G               GK+IH    + GL +S+V  GN+
Sbjct: 343 ------------------RPGGLA------------RGKEIHARAAKDGL-VSDVRFGNA 371

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI+MY K G +  A  VF  M + D++SW +L+    +      +   F  M   G   +
Sbjct: 372 LINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKAN 431

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           + T   V+ AC+    L  GK++ A  VK G L++  V +A + ++ KC  +ED++R+FE
Sbjct: 432 KITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFE 491

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEH 364
            +   D    N +I   G+ G G  AL+ +++M  E +RP   T   VLS+  +   VE 
Sbjct: 492 GMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEE 551

Query: 365 G-SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           G  QF  M+   G        + ++++ A+ G +  + ++ + +  K     W  ++
Sbjct: 552 GRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALL 608



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 156/339 (46%), Gaps = 14/339 (4%)

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           D    +   G   D Y    ++ +C K ++L  GKQV    ++ G   N  + +  + L+
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
           + C  + ++ +LF++         NVMIS Y   G  + A  LF LM +E + P +FT  
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 352 CVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            +LS+   P V + G + H   +++G  ++  V ++L+ MYAK GS+  +  +F  +  R
Sbjct: 134 SILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASR 193

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D VSW T+     ++G   E+L  +  +L+E + P RIT   VL AC     ++KG  + 
Sbjct: 194 DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIH 253

Query: 471 SAMKEEYGVMPGEEH-----YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525
           + + E       E H        +  +  + G    A ++   + ++   + W +++R  
Sbjct: 254 AHIVE------SEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIA-WNTMIRGF 306

Query: 526 AIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
              G ++       RM++  + P    Y+ +  A A  G
Sbjct: 307 VDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPG 345


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 212/624 (33%), Positives = 322/624 (51%), Gaps = 41/624 (6%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +L     L+  C++ +     K++H    K      TY  N  + LYS+ G      + F
Sbjct: 7   TLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAF 66

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            +I   N  S+N  +    K      A ++FD+IPEPD+VS+N++IS YA CG +  AL 
Sbjct: 67  QDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALG 126

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGK-----QIHGSMIRSGLSLSNVVLGNSLID 188
           +FS M+  G+   GFT    LS V +AC        Q+H   + SG   S V + N+L+ 
Sbjct: 127 LFSGMREMGLDMDGFT----LSAVITACCDDVGLIGQLHSVAVSSGFD-SYVSVNNALLT 181

Query: 189 MYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            YGK G L  A  VF  M  + D +SWNS+I        G  AL  F  M   G + D +
Sbjct: 182 YYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMF 241

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQ 306
           T++ V+ A T L +L  G Q     +K GF  NS V S  IDL+SKC   + D  ++FE+
Sbjct: 242 TLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE 301

Query: 307 LDRWDYAVINVMISTYGR-YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           +   D  + N M+S Y +   F E ALE F+ M     RP + +  CV+S+   +     
Sbjct: 302 ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQ 361

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q HS+A+K  FD                           ++ + + VS N+++ G  Q
Sbjct: 362 GKQIHSLALKRLFD---------------------------RMAEHNTVSLNSMIAGYAQ 394

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   E+L +F+ +LE  + P  IT  +VL AC + G V++G   F+ MKE++ + P  E
Sbjct: 395 HGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAE 454

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY+C+IDLL +AG+L +A ++ + MPF PG   W S+L A   +G+++L    A +++ L
Sbjct: 455 HYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQL 514

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +  +  PY +L+  YA  GRWE +  V+K MR  G+ K  GCSWI +K RI+ F A +  
Sbjct: 515 EPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSS 574

Query: 605 HHGGQKIYLVLRLLTWEMEDEGCV 628
           H   ++IY  L  ++ +M+  G V
Sbjct: 575 HPMIKEIYEFLEEMSGKMKRAGYV 598


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 326/595 (54%), Gaps = 16/595 (2%)

Query: 43   KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL----KSDNLD 98
            KLG   ++Y  +  L  ++  G   +  ++   + +    S+N  +  L+    KS  +D
Sbjct: 546  KLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVD 605

Query: 99   TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
            +A K+FDE+ + DVVSWNSMISG    G+S  ALE F +M +  V   G   + L+++V+
Sbjct: 606  SAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV---GVDLATLVNSVA 662

Query: 159  SACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +  +      G+ +HG  +++  S   V+  N+L+DMY K G L  A   F  M +  ++
Sbjct: 663  ACANVGSLSLGRALHGQGVKACFS-REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVV 721

Query: 213  SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            SW SLI+     G  + A+  FY M   G SPD Y+++ V++AC    +LDKG+ V    
Sbjct: 722  SWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYI 781

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
             K        V +A +D+++KC  +E++  +F Q+   D    N MI  Y +      AL
Sbjct: 782  RKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEAL 841

Query: 333  ELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            +LF  M +E  RP   T++C+L +   +  +E G   H   +++G+ S   VA++L++MY
Sbjct: 842  KLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMY 900

Query: 392  AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
             K GS+  +  +F  + ++DL++W  ++ G   +G   E +  F+++   G+ PD IT  
Sbjct: 901  VKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFT 960

Query: 452  AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            ++L AC++ G +++G   F++M  E  + P  EHYAC++DLL + G L KA ++  TMP 
Sbjct: 961  SILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPI 1020

Query: 512  QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
            +P  +IW ++L    I+ DV+L E VAE + +L+  +   Y LL   YA   +WE + ++
Sbjct: 1021 KPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKL 1080

Query: 572  KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            ++ + K G+ K  GCSWI ++ +  TF + +  H   + I+ +L  L  +M++EG
Sbjct: 1081 RERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEG 1135



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/531 (26%), Positives = 248/531 (46%), Gaps = 42/531 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L+ +  ++  L+  S ++  C   K     K +H  +   G      LG + + +Y   G
Sbjct: 441 LRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG 500

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              +  ++FD I   N                     KVF          WN M+S YA 
Sbjct: 501 ALREGRRIFDHILSDN---------------------KVF---------LWNLMMSEYAK 530

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVV 181
            G    ++ +F KMQ  G+  + +TFS +L   +T+      K+IHG + + G    N V
Sbjct: 531 IGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTV 590

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + NSLI  Y K G +  A  +F  + + D++SWNS+ISGC  +G+   AL+ F  M    
Sbjct: 591 V-NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILR 649

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D  T+   + AC  + +L  G+ +    VK  F    +  +  +D++SKC  L D++
Sbjct: 650 VGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAI 709

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-P 360
           + FE++ +        +I+ Y R G  + A+ LF  M  + + P  ++++ VL +     
Sbjct: 710 QAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGN 769

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            ++ G   H+   K+       V+++LM+MYAK GS++ +  +F ++  +D+VSWNT++ 
Sbjct: 770 SLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG 829

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGV 479
           G ++N    E L +F E+ +E   PD IT+A +L AC     ++ G  +    ++  Y  
Sbjct: 830 GYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGY-- 886

Query: 480 MPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
              E H A  +ID+  + G L  A  +   +P +     W  ++    ++G
Sbjct: 887 -SSELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMHG 935



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 195/411 (47%), Gaps = 8/411 (1%)

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC--HGKQIHGSMIRS 173
           N+ I  +   G    A+E+    Q   +  + ++ SIL       C   GK +H  +  +
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS-SILQLCAEHKCLQEGKMVHSVISSN 480

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN-MEELDIISWNSLISGCFNSGYGELALD 232
           G+ +  V LG  L+ MY   G L     +F + + +  +  WN ++S     G    ++ 
Sbjct: 481 GIPIEGV-LGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            F  M+  G + + YT S ++     L  + + K++     K+GF S + V+++ I  + 
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF 599

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-S 351
           K   ++ + +LF++L   D    N MIS     GF   ALE F  ML   +     TL +
Sbjct: 600 KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVN 659

Query: 352 CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
            V +   +  +  G   H   +K+ F    +  ++L++MY+K G+++ + + F K+ ++ 
Sbjct: 660 SVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT 719

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           +VSW +++    + G   + + +F E+  +G+ PD  ++ +VL AC  G  +DKG  V +
Sbjct: 720 VVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN 779

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            +++    +      A ++D+  + G + +A  + S +P +   S W +++
Sbjct: 780 YIRKNNMALCLPVSNA-LMDMYAKCGSMEEAYLVFSQIPVKDIVS-WNTMI 828



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 37/293 (12%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + ++  C    S D  + +H ++ K        + N  +D+Y++ G+ ++   +F +IP 
Sbjct: 759  TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV 818

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            K+ +SWN  + G                               Y+     + AL++F++M
Sbjct: 819  KDIVSWNTMIGG-------------------------------YSKNSLPNEALKLFAEM 847

Query: 139  QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            Q +  RP G T + LL    S      G+ IHG ++R+G S S + + N+LIDMY K G 
Sbjct: 848  QKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS-SELHVANALIDMYVKCGS 905

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            L +A  +F  + E D+I+W  +ISGC   G G  A+  F  MR +G  PDE T + ++ A
Sbjct: 906  LVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYA 965

Query: 256  CTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQL 307
            C+    L++G   F   +    +   +   A  +DL ++   L  +  L E +
Sbjct: 966  CSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETM 1018


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/614 (31%), Positives = 321/614 (52%), Gaps = 48/614 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+   S   A+ +HGH+ K G +A  ++    ++ Y R G S D   LFD++P+KN
Sbjct: 84  LLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKN 143

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ++W              TAL                 I+GY        ALE+F +M  
Sbjct: 144 VVTW--------------TAL-----------------ITGYTVNSQLLEALEVFVEMLE 172

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T   +L+  S++ +   G Q+HG  I+   +LS   +GNSL  MY K G L 
Sbjct: 173 AGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKY-RALSITSIGNSLCRMYAKSGSLE 231

Query: 198 YAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A   F  + + ++I+W ++IS C  +  Y EL L  F  M   G  P+E+T++ V++ C
Sbjct: 232 SAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLC 291

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +L+ GKQV A   K+G  +N  V ++T+ L+ +    ++++R FE++D       N
Sbjct: 292 GTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWN 351

Query: 317 VMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            MIS Y +              G  AL++F+ + R  ++P  FT S +LS    +  +E 
Sbjct: 352 AMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQ 411

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK+GF S+ VV S+L+ MY K G I+ +T+ FV++  R LV+W +++ G +Q
Sbjct: 412 GEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQ 471

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +GR  E + +FE++   G+ P+ IT   VL AC+Y G  +K    F  MKEEY + P  +
Sbjct: 472 HGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVD 531

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C++D+  + G+L  A        F+P  +IW S++     +G+++L    A+R+++L
Sbjct: 532 HYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIEL 591

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL   Y    RW  + RV+K+M++ G+  +   SWI IK+++Y F A +  
Sbjct: 592 RPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKT 651

Query: 605 HHGGQKIYLVLRLL 618
           H    ++Y +L  L
Sbjct: 652 HELSDELYQLLENL 665



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 141/287 (49%), Gaps = 27/287 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +    +  K +    FK+G   +  + N  + LY R G +D+ ++ F+E+  
Sbjct: 285 TSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDD 344

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+WN  + G             + +I E      ++   G+        AL++F  +
Sbjct: 345 VSIITWNAMISG-------------YAQIMETAKDDLHARSRGFQ-------ALKVFRNL 384

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   ++P  FTFS +LS  SS      G+QIH   I++G  LS+VV+ ++L++MY K G 
Sbjct: 385 KRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGF-LSDVVVNSALVNMYNKCGC 443

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F+ M    +++W S+ISG    G  + A+  F  MR++G  P+E T   V++A
Sbjct: 444 IEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSA 503

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDS 300
           C+     +K +  F + +K  +    IV      +D+F +  RL+D+
Sbjct: 504 CSYAGLAEKAEHYFDM-MKEEYKIEPIVDHYGCMVDMFVRLGRLDDA 549



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 38/242 (15%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K    K  L   S ++  C S  + +  + IH    K GF +   + +  +++Y++ G  
Sbjct: 385 KRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCI 444

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           +D  + F E+  +  ++W                                SMISGY+  G
Sbjct: 445 EDATKAFVEMSIRTLVTW-------------------------------TSMISGYSQHG 473

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLG- 183
               A+++F  M+  GVRP+  TF  +LS  S A      + +  M++    +  +V   
Sbjct: 474 RPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHY 533

Query: 184 NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELAL---DQFYSMRY 239
             ++DM+ +LG L  AF        E +   W+SL++GC + G  ELA    D+   +R 
Sbjct: 534 GCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRP 593

Query: 240 SG 241
            G
Sbjct: 594 KG 595


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/541 (31%), Positives = 321/541 (59%), Gaps = 9/541 (1%)

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S +L +A KVFD++PE ++V+W  MI+ +A  G +  A+++F  M+L G  P  FT+S +
Sbjct: 178 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 237

Query: 154 LSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLNME 207
           LS  +       GKQ+H  +IR GL+L +V +G SL+DMY K    G +  +  VF  M 
Sbjct: 238 LSACTELGLLALGKQLHSRVIRLGLAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 296

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGK 266
           E +++SW ++I+    SG  +    + +    SG+  P+ ++ S V+ AC  L +   G+
Sbjct: 297 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 356

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           QV++ +VK+G  S + V ++ I ++++  R+ED+ + F+ L   +    N ++  Y +  
Sbjct: 357 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 416

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E A  LF  +    I  + FT + +LS +  I  +  G Q H   +K G+ SN  + +
Sbjct: 417 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 476

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ MY++ G+I+++ ++F +++ R+++SW +++ G  ++G A   L++F ++LE G  P
Sbjct: 477 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 536

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + IT  AVL AC++ G + +G   F++M +E+G++P  EHYAC++DLL ++G L +A++ 
Sbjct: 537 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 596

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
            ++MP      +W ++L A  ++G+ +L  + AE +++ +   P  Y LL+  +A  G+W
Sbjct: 597 INSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQW 656

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           + +V+++K M++  + K  GCSWI ++NR++ F+ GE  H    +IY  L  L  ++++ 
Sbjct: 657 KDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEM 716

Query: 626 G 626
           G
Sbjct: 717 G 717



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/563 (26%), Positives = 272/563 (48%), Gaps = 50/563 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L+  S L+  C+ F++F   K +H  L + G    + + N  + LYS+ G ++    +F+
Sbjct: 26  LTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFE 85

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +  K                               D+VSW++M+S +A+      A+  
Sbjct: 86  GMGNKR------------------------------DLVSWSAMVSCFANNSMEWQAIWT 115

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M   G  P+ + F+ ++   S+A +   G+ I+G ++++G   ++V +G  LIDM+ 
Sbjct: 116 FLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFV 175

Query: 192 K-LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           K  G L  A+ VF  M E ++++W  +I+     G    A+D F  M  SGY PD +T S
Sbjct: 176 KGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 235

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC---NRLEDSVRLFEQL 307
            V++ACT+L  L  GKQ+ +  +++G   +  V  + +D+++KC     ++DS ++FEQ+
Sbjct: 236 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 295

Query: 308 DRWDYAVINVMISTYGRYG-FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHG 365
              +      +I+ Y + G   + A+ELF  M+   IRP  F+ S VL +   +     G
Sbjct: 296 PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 355

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q +S A+K G  S   V +SL+ MYA++G ++ + + F  L +++LVS+N I+ G  +N
Sbjct: 356 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 415

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
            ++ E   +F E+ + G+     T A++L      G + KG  +   +     +  G + 
Sbjct: 416 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKS 470

Query: 486 YACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             CI    I +  + G +  A  + + M  +   S W S++   A +G       +  +M
Sbjct: 471 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKM 529

Query: 542 MDL-QLPSPLPYSLLTQAYAMRG 563
           ++    P+ + Y  +  A +  G
Sbjct: 530 LETGTKPNEITYVAVLSACSHVG 552



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 196/400 (49%), Gaps = 28/400 (7%)

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVL 182
           G   +A      M  Q   P   T+SILL +     +   GK +H  +++SGL L +VVL
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
            N+LI +Y K G    A  +F  M  + D++SW++++S   N+     A+  F  M   G
Sbjct: 65  -NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSK-CNRLED 299
           + P+EY  + VI AC+       G+ ++   VK G+L   + +    ID+F K    L  
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IP 358
           + ++F+++   +     +MI+ + + G    A++LF  M      P  FT S VLS+   
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT---GSIDSSTEIFVKLDKRDLVSW 415
           +  +  G Q HS  I+ G   +  V  SL++MYAK    GS+D S ++F ++ + +++SW
Sbjct: 244 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 303

Query: 416 NTIMMGLTQNGRA-AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD--KGMLVFSA 472
             I+    Q+G    E +++F +++   + P+  + ++VL AC  G   D   G  V+S 
Sbjct: 304 TAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSDPYTGEQVYS- 360

Query: 473 MKEEYGVMPGEEHYACI----IDLLCQAGQLG---KAIDI 505
               Y V  G     C+    I +  ++G++    KA DI
Sbjct: 361 ----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI 396



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 132/265 (49%), Gaps = 36/265 (13%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
            H+     S+ S ++  C +       + ++ +  KLG  +   +GN  + +Y+R G  +
Sbjct: 330 GHIRPNHFSF-SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 388

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           D  + FD + +KN +S+N                               +++ GYA    
Sbjct: 389 DARKAFDILFEKNLVSYN-------------------------------AIVDGYAKNLK 417

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
           S+ A  +F+++   G+  S FTF+ LLS   ++ +   G+QIHG +++ G   SN  + N
Sbjct: 418 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICN 476

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +LI MY + G +  AF VF  ME+ ++ISW S+I+G    G+   AL+ F+ M  +G  P
Sbjct: 477 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 536

Query: 245 DEYTISIVINACTKLRNLDKGKQVF 269
           +E T   V++AC+ +  + +G++ F
Sbjct: 537 NEITYVAVLSACSHVGMISEGQKHF 561



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 37/217 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+    S  +    + IHG L K G+ ++  + N  + +YSR G  +   Q+F+E+  
Sbjct: 441 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 500

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N ISW                                SMI+G+A  G++  ALEMF KM
Sbjct: 501 RNVISW-------------------------------TSMITGFAKHGFATRALEMFHKM 529

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P+  T+  +LS  S       G++   SM +    +  +     ++D+ G+ G+
Sbjct: 530 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 589

Query: 196 LYYAFGVFLNMEEL--DIISWNSLISGCFNSGYGELA 230
           L  A   F+N   L  D + W +L+  C   G  EL 
Sbjct: 590 LVEAME-FINSMPLMADALVWRTLLGACRVHGNTELG 625


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/541 (31%), Positives = 321/541 (59%), Gaps = 9/541 (1%)

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S +L +A KVFD++PE ++V+W  MI+ +A  G +  A+++F  M+L G  P  FT+S +
Sbjct: 196 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 255

Query: 154 LSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLNME 207
           LS  +       GKQ+H  +IR GL+L +V +G SL+DMY K    G +  +  VF  M 
Sbjct: 256 LSACTELGLLALGKQLHSRVIRLGLAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 314

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGK 266
           E +++SW ++I+    SG  +    + +    SG+  P+ ++ S V+ AC  L +   G+
Sbjct: 315 EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 374

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           QV++ +VK+G  S + V ++ I ++++  R+ED+ + F+ L   +    N ++  Y +  
Sbjct: 375 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 434

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E A  LF  +    I  + FT + +LS +  I  +  G Q H   +K G+ SN  + +
Sbjct: 435 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 494

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ MY++ G+I+++ ++F +++ R+++SW +++ G  ++G A   L++F ++LE G  P
Sbjct: 495 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 554

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + IT  AVL AC++ G + +G   F++M +E+G++P  EHYAC++DLL ++G L +A++ 
Sbjct: 555 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 614

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
            ++MP      +W ++L A  ++G+ +L  + AE +++ +   P  Y LL+  +A  G+W
Sbjct: 615 INSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQW 674

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           + +V+++K M++  + K  GCSWI ++NR++ F+ GE  H    +IY  L  L  ++++ 
Sbjct: 675 KDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEM 734

Query: 626 G 626
           G
Sbjct: 735 G 735



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/563 (26%), Positives = 272/563 (48%), Gaps = 50/563 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L+  S L+  C+ F++F   K +H  L + G    + + N  + LYS+ G ++    +F+
Sbjct: 44  LTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFE 103

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +  K                               D+VSW++M+S +A+      A+  
Sbjct: 104 GMGNKR------------------------------DLVSWSAMVSCFANNSMEWQAIWT 133

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M   G  P+ + F+ ++   S+A +   G+ I+G ++++G   ++V +G  LIDM+ 
Sbjct: 134 FLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFV 193

Query: 192 K-LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           K  G L  A+ VF  M E ++++W  +I+     G    A+D F  M  SGY PD +T S
Sbjct: 194 KGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 253

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC---NRLEDSVRLFEQL 307
            V++ACT+L  L  GKQ+ +  +++G   +  V  + +D+++KC     ++DS ++FEQ+
Sbjct: 254 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 313

Query: 308 DRWDYAVINVMISTYGRYG-FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHG 365
              +      +I+ Y + G   + A+ELF  M+   IRP  F+ S VL +   +     G
Sbjct: 314 PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG 373

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q +S A+K G  S   V +SL+ MYA++G ++ + + F  L +++LVS+N I+ G  +N
Sbjct: 374 EQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKN 433

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
            ++ E   +F E+ + G+     T A++L      G + KG  +   +     +  G + 
Sbjct: 434 LKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKS 488

Query: 486 YACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             CI    I +  + G +  A  + + M  +   S W S++   A +G       +  +M
Sbjct: 489 NQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS-WTSMITGFAKHGFATRALEMFHKM 547

Query: 542 MDL-QLPSPLPYSLLTQAYAMRG 563
           ++    P+ + Y  +  A +  G
Sbjct: 548 LETGTKPNEITYVAVLSACSHVG 570



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 196/400 (49%), Gaps = 28/400 (7%)

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVL 182
           G   +A      M  Q   P   T+SILL +     +   GK +H  +++SGL L +VVL
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
            N+LI +Y K G    A  +F  M  + D++SW++++S   N+     A+  F  M   G
Sbjct: 83  -NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSK-CNRLED 299
           + P+EY  + VI AC+       G+ ++   VK G+L   + +    ID+F K    L  
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IP 358
           + ++F+++   +     +MI+ + + G    A++LF  M      P  FT S VLS+   
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT---GSIDSSTEIFVKLDKRDLVSW 415
           +  +  G Q HS  I+ G   +  V  SL++MYAK    GS+D S ++F ++ + +++SW
Sbjct: 262 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 321

Query: 416 NTIMMGLTQNGRA-AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD--KGMLVFSA 472
             I+    Q+G    E +++F +++   + P+  + ++VL AC  G   D   G  V+S 
Sbjct: 322 TAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSDPYTGEQVYS- 378

Query: 473 MKEEYGVMPGEEHYACI----IDLLCQAGQL---GKAIDI 505
               Y V  G     C+    I +  ++G++    KA DI
Sbjct: 379 ----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDI 414



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 132/265 (49%), Gaps = 36/265 (13%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
            H+     S+ S ++  C +       + ++ +  KLG  +   +GN  + +Y+R G  +
Sbjct: 348 GHIRPNHFSF-SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRME 406

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           D  + FD + +KN +S+N                               +++ GYA    
Sbjct: 407 DARKAFDILFEKNLVSYN-------------------------------AIVDGYAKNLK 435

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
           S+ A  +F+++   G+  S FTF+ LLS   ++ +   G+QIHG +++ G   SN  + N
Sbjct: 436 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICN 494

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +LI MY + G +  AF VF  ME+ ++ISW S+I+G    G+   AL+ F+ M  +G  P
Sbjct: 495 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 554

Query: 245 DEYTISIVINACTKLRNLDKGKQVF 269
           +E T   V++AC+ +  + +G++ F
Sbjct: 555 NEITYVAVLSACSHVGMISEGQKHF 579



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 37/217 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+    S  +    + IHG L K G+ ++  + N  + +YSR G  +   Q+F+E+  
Sbjct: 459 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 518

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N ISW                                SMI+G+A  G++  ALEMF KM
Sbjct: 519 RNVISW-------------------------------TSMITGFAKHGFATRALEMFHKM 547

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P+  T+  +LS  S       G++   SM +    +  +     ++D+ G+ G+
Sbjct: 548 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 607

Query: 196 LYYAFGVFLNMEEL--DIISWNSLISGCFNSGYGELA 230
           L  A   F+N   L  D + W +L+  C   G  EL 
Sbjct: 608 LVEAME-FINSMPLMADALVWRTLLGACRVHGNTELG 643


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/612 (30%), Positives = 319/612 (52%), Gaps = 41/612 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C+   S +    +H  +   GF +HT++    L++Y++    +D          
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIED---------- 224

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                + KVF+ + E +VVSWN+MI+G+ S      A ++F +M
Sbjct: 225 ---------------------SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 139 QLQGVRPSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P   TF   +  +  +      K++ G  +  G+  SN ++G +LIDM  K G 
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVD-SNTLVGTALIDMNSKCGS 322

Query: 196 LYYAFGVFLNMEELDI---ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           L  A  +F N   +       WN++ISG   SG+ E AL+ F  M  +    D YT   V
Sbjct: 323 LQEARSIF-NSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSV 381

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDRWD 311
            NA   L+ L  GK+V A ++K G   N + +S A  + ++KC  LED  ++F +++  D
Sbjct: 382 FNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRD 441

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
                 +++ Y +    + A+E+F  M  E I P +FT S VL S   +  +E+G Q H 
Sbjct: 442 LISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHG 501

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           +  K G D +  + S+L++MYAK G +  + ++F ++   D VSW  I+ G  Q+G   +
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +F  +++ G+ P+ +T   VL AC++GG V++G+  F  MK+ YG++P  EHYACI+
Sbjct: 562 ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIV 621

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL + G L  A++  S MP +P   +W+++L A  ++G+V+L E  A++++  +  +  
Sbjct: 622 DLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSA 681

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  Y   G ++  + ++ VM++ G+ K  GCSWI +   ++ F AG+ QH    K
Sbjct: 682 TYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDK 741

Query: 611 IYLVLRLLTWEM 622
           IY  L  L  ++
Sbjct: 742 IYAKLEELKLKL 753



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 158/572 (27%), Positives = 284/572 (49%), Gaps = 54/572 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+  +    AKT+HG L K  F+ H  L                            
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSL---------------------------- 105

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +  N       K  ++D A ++FD++ + +  SW  +I+G A  G      E F +MQ 
Sbjct: 106 -VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQS 164

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           QG+ P  F +S +L     + S   G  +H  ++  G + S+  +  +L++MY KL  + 
Sbjct: 165 QGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFT-SHTFVSTALLNMYAKLQEIE 223

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            ++ VF  M E++++SWN++I+G  ++     A D F  M   G +PD  T   V  A  
Sbjct: 224 DSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIG 283

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ---LDRWDYAV 314
            LR+++K K+V   ++++G  SN++V +A ID+ SKC  L+++  +F       R++ A 
Sbjct: 284 MLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFN-AP 342

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAI 373
            N MIS Y R GF E ALELF  M + DI    +T   V ++I  +  +  G + H+ AI
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402

Query: 374 KSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           KSG + N V +++++   YAK GS++   ++F +++ RDL+SW +++   +Q     + +
Sbjct: 403 KSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAI 462

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM--PGEEHYACI- 489
           ++F  +  EG+ P++ T ++VL++C     ++ G  V       +G++   G +   CI 
Sbjct: 463 EIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQV-------HGIICKVGLDMDKCIE 515

Query: 490 ---IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
              +D+  + G LG A  + + +      S W +I+   A +G V     +  RM+ L +
Sbjct: 516 SALVDMYAKCGCLGDAKKVFNRISNADTVS-WTAIIAGHAQHGIVDDALQLFRRMVQLGV 574

Query: 547 -PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
            P+ + +  +  A +  G  E  ++  K+M+K
Sbjct: 575 EPNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 203/619 (32%), Positives = 330/619 (53%), Gaps = 13/619 (2%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C++ +     KT+H   FK      TYL N    LYS+ G+  +    FD     
Sbjct: 14  NLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYP 73

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S+N  +    K   +  A +VFDEIP+PD+VS+N++I+ YA  G    AL +F++++
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 140 LQGVRPSGFTFS-ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
                  GFT S ++++        +Q+H  ++  G      V  N+++  Y + G L  
Sbjct: 134 ELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASV-NNAVLACYSRKGFLNE 192

Query: 199 AFGVFLNMEE---LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           A  VF  M E    D +SWN++I  C     G  A++ F  M   G   D +T++ V+ A
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTA 252

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAV 314
            T +++L  G Q   + +K GF  NS V S  IDL+SKC   + +  ++FE++   D  +
Sbjct: 253 FTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVL 312

Query: 315 INVMISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSS---IPIPPVEHGSQFHS 370
            N MIS + +Y    E  +  F+ M      P + +  CV S+   +  P V  G Q H+
Sbjct: 313 WNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSV--GKQVHA 370

Query: 371 MAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +AIKS    N V V ++L+ MY+K G++  +  +F  + + ++VS N+++ G  Q+G   
Sbjct: 371 LAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEV 430

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E+L +FE +L++ + P+ IT  AVL AC + G V++G   F+ MKE + + P  EHY+C+
Sbjct: 431 ESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCM 490

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLL +AG+L +A  I  TMPF PG   W ++L A   +G+V+L    A   + L+  + 
Sbjct: 491 IDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNA 550

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
            PY +L+  YA   RWE    VK++MR+ G+ K  GCSWI I  +++ F A +  H   +
Sbjct: 551 APYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIK 610

Query: 610 KIYLVLRLLTWEMEDEGCV 628
           +I++ +  +  +M+  G V
Sbjct: 611 EIHVYMGEILRKMKQAGYV 629


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 317/606 (52%), Gaps = 74/606 (12%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  ++ Y R G  +  L+LFD +PQKN  SWN+ + G  K+  LD A K+F+E+P  + V
Sbjct: 77  NTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGV 136

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPS-GFTFSILLSTVSSAC-------HGKQ 165
           +WNSMI GYA  G++  A+ +F ++    +  S G TF  +L++V  AC       +GKQ
Sbjct: 137 AWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTF--VLASVIGACADLGAIEYGKQ 194

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD--------------- 210
           +H  ++   + L +V++ +SLI++Y K G L  A  V   M+E+D               
Sbjct: 195 VHARILMDDVELDSVLI-SSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCG 253

Query: 211 ----------------IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
                            + WNSLISG  N+     A      M+ +    D  TI+++++
Sbjct: 254 RMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILS 313

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+   N    KQ+     KVG + + IV SA ID +SKC    D+ +LF +L  +D  +
Sbjct: 314 ACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVL 373

Query: 315 INVMISTYGRYG-------------------------------FGEVALELFQLMLREDI 343
           +N MI+ Y   G                               +   AL++F  M + D+
Sbjct: 374 LNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDL 433

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           R   F+L+ V+S+   I  +E G Q  + AI +G +S+  V++SL++ Y K G I++  +
Sbjct: 434 RMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRK 493

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  + K D VSWN+++MG   NG   ETL +F E+ + GL P  IT   VL AC++ G 
Sbjct: 494 LFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGL 553

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           V++G   F+ MK +Y + PG EHY+C++DL  +AG L +A+++   MPF+  CS+W S+L
Sbjct: 554 VEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVL 613

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
           R    +GD  L + VA++++ L   S   Y  L+  +A  G WE+   V+K+M +  + K
Sbjct: 614 RGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSALVRKIMTEKQVKK 673

Query: 583 VTGCSW 588
             G SW
Sbjct: 674 HPGFSW 679



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 207/447 (46%), Gaps = 42/447 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG---TSDDVLQLFDE 75
           + +I  C    + ++ K +H  +        + L +  ++LY++ G   T++ VL++ DE
Sbjct: 177 ASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDE 236

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +      S +  + G      +  A+++F     P  V WNS+ISGY +      A  + 
Sbjct: 237 VDD---FSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALV 293

Query: 136 SKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLS-------------- 178
           ++M+   V+    T +++LS  SS   A + KQ+HG + + GL  S              
Sbjct: 294 NEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKC 353

Query: 179 ----------------NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
                           + VL NS+I  Y   G +  A  +F  M    +ISWNS+I G  
Sbjct: 354 RNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLA 413

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            + Y   ALD F  M       D ++++ VI+AC  + +L+ G+QVFA ++  G  S+  
Sbjct: 414 QNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQA 473

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ +D + KC  +E+  +LF+ + + D    N M+  Y   G+G   L LF  M +  
Sbjct: 474 VSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAG 533

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           +RPT+ T + VLS+      VE G + F+ M      D      S +++++A+ G +  +
Sbjct: 534 LRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEA 593

Query: 401 TEIFVKLD-KRDLVSWNTIMMGLTQNG 426
             +   +  + D   W++++ G   +G
Sbjct: 594 LNLVEHMPFEADCSMWSSVLRGCVAHG 620



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 44/288 (15%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL-GVLYYAFGVFLNMEELDII 212
           L+T SS   GKQ+H   ++ GL  + V L N L+ MY +  G +  A  +F  M E +  
Sbjct: 15  LNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCF 74

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN++I G    G  E +L  F  M       ++Y+ ++VI+   K   LD  K      
Sbjct: 75  SWNTMIEGYMRVGDKERSLKLFDLMP----QKNDYSWNVVISGFAKAGELDVAK------ 124

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
                                        +LF ++ R +    N MI  Y R GF   A+
Sbjct: 125 -----------------------------KLFNEMPRRNGVAWNSMIHGYARNGFAREAV 155

Query: 333 ELFQLMLREDIRPT---EFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            LF+ +    +  +    F L+ V+ +   +  +E+G Q H+  +    + ++V+ SSL+
Sbjct: 156 GLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLI 215

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            +YAK G +D++  +   +D+ D  S + ++MG    GR ++ + +F 
Sbjct: 216 NLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFR 263


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 195/617 (31%), Positives = 320/617 (51%), Gaps = 39/617 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C+   S +  K +H  +   GF  H ++    L++Y++ G+ +D          
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY-------- 276

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                W                  VF+ + E + VSWN+MISG  S G    A ++F +M
Sbjct: 277 -----W------------------VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM 313

Query: 139 QLQGVRPSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +     P+ +T    S  +  +     GK++       G+   NV++G +LIDMY K G 
Sbjct: 314 KNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIE-GNVLVGTALIDMYSKCGS 372

Query: 196 LYYAFGVF-LNMEELDI-ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           L+ A  VF  N     +   WN++ISG   SG  + AL+ +  M  +G + D YT   V 
Sbjct: 373 LHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVF 432

Query: 254 NACTKLRNLDKGKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           NA    ++L  G+ V  + +K G  L    V +A  D +SKC  LED  ++F++++  D 
Sbjct: 433 NAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDI 492

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSM 371
                +++ Y +   GE AL  F LM  E   P +FT S VL S   +  +E+G Q H +
Sbjct: 493 VSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGL 552

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K+G D+   + S+L++MYAK GSI  + ++F K+   D+VSW  I+ G  Q+G   + 
Sbjct: 553 LCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDA 612

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L +F  +   G+  + +TL  VL AC++GG V++G+  F  M++ YGV+P  EHYACIID
Sbjct: 613 LQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIID 672

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL + G+L  A++    MP +P   +W+++L    ++G+V+L E  A +++ ++      
Sbjct: 673 LLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSAT 732

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL+  Y   G +E  + ++ VM+  G+ K  G SWI +K R++ F +G+ QH   ++I
Sbjct: 733 YVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEI 792

Query: 612 YLVLRLLTWEMEDEGCV 628
           Y+ L  L  +++  G V
Sbjct: 793 YVKLEELREKIKAMGYV 809



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 237/465 (50%), Gaps = 28/465 (6%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K      A  VFDE+P+ +V SW  MI G    G      + F +M   G+ P  F +S 
Sbjct: 167 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 226

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++ +   + S   GK +H  ++  G + +++ +  SL++MY KLG +  ++ VF  M E 
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFA-THIFVSTSLLNMYAKLGSIEDSYWVFNMMTEH 285

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + +SWN++ISGC ++G    A D F  M+    +P+ YT+  V  A  KL +++ GK+V 
Sbjct: 286 NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 345

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGF 327
             + ++G   N +V +A ID++SKC  L D+  +F+   ++       N MIS Y + G 
Sbjct: 346 NCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 405

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAV-VAS 385
            + ALEL+  M +  I    +T   V ++I     ++ G   H M +K G D   V V +
Sbjct: 406 SQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNN 465

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           ++ + Y+K G ++   ++F ++++RD+VSW T++   +Q+    E L  F  + EEG  P
Sbjct: 466 AIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAP 525

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM--PGEEHYACI----IDLLCQAGQL 499
           ++ T ++VL++C    F++ G       ++ +G++   G +   CI    ID+  + G +
Sbjct: 526 NQFTFSSVLISCASLCFLEYG-------RQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 578

Query: 500 ---GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
              GK  D  S     P    W +I+   A +G V+    +  RM
Sbjct: 579 TEAGKVFDKISN----PDIVSWTAIISGYAQHGLVEDALQLFRRM 619



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 144/298 (48%), Gaps = 4/298 (1%)

Query: 163 GKQIHGSMIRSGLSLSNV-VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            K +HG +++S     ++ VL N    +Y K      A GVF  M + ++ SW  +I G 
Sbjct: 137 AKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGS 196

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
              G        F  M  SG  PD++  S +I +C  L +L+ GK V A  V  GF ++ 
Sbjct: 197 TEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHI 256

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V ++ +++++K   +EDS  +F  +   +    N MIS     G    A +LF  M   
Sbjct: 257 FVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNG 316

Query: 342 DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
              P  +TL  V  ++  +  V  G +  + A + G + N +V ++L++MY+K GS+  +
Sbjct: 317 ACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDA 376

Query: 401 TEIFVK--LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
             +F    ++      WN ++ G +Q+G + E L+++ ++ + G+  D  T  +V  A
Sbjct: 377 RSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNA 434



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 182/413 (44%), Gaps = 60/413 (14%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFD 74
           +YCS + +   + KS  F + +HG + K G +     + N   D YS+ G  +DV ++FD
Sbjct: 427 TYCS-VFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFD 485

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            + +++                               +VSW ++++ Y+     + AL  
Sbjct: 486 RMEERD-------------------------------IVSWTTLVTAYSQSSLGEEALAT 514

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M+ +G  P+ FTFS +L + +S C   +G+Q+HG + ++GL     +  ++LIDMY 
Sbjct: 515 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCI-ESALIDMYA 573

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  VF  +   DI+SW ++ISG    G  E AL  F  M  SG   +  T+  
Sbjct: 574 KCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 633

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL--- 307
           V+ AC+    +++G   F  +    G +      +  IDL  +  RL+D++    ++   
Sbjct: 634 VLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME 693

Query: 308 -DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGS 366
            +   +  +      +G    GE+A           IRP E++ + VL S     +E GS
Sbjct: 694 PNEMVWQTLLGGCRVHGNVELGEIAARKIL-----SIRP-EYSATYVLLSNTY--IETGS 745

Query: 367 QFHSMAIKSGFDSNAV----------VASSLMEMYAKTGSIDSSTEIFVKLDK 409
               +++++      V          V   + + Y+         EI+VKL++
Sbjct: 746 YEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEE 798



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 362 VEHGSQFHSMAIKSGFDSN--AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
           +      H + +KS F+     V+ +    +Y+K     ++  +F ++ +R++ SW  ++
Sbjct: 134 IREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMI 193

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           +G T++G   +    F E+L  G+ PD+   +A++ +C
Sbjct: 194 VGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC 231


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/547 (31%), Positives = 309/547 (56%), Gaps = 6/547 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  +    KS+ LD A ++F E+PE D VS+N+MI+GY+  G  + A+ +F +MQ  G++
Sbjct: 188 NTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLK 247

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ FTF+ +L     +     G+QIH  +I++   + NV + N+L+D Y K   +  A  
Sbjct: 248 PTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNF-VWNVFVSNALLDFYSKHDSVIDARK 306

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M E D +S+N +ISG    G  + A D F  ++++ +   ++  + +++  +   +
Sbjct: 307 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 366

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
            + G+Q+ A ++     S  +V ++ +D+++KC + E++  +F  L          MIS 
Sbjct: 367 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISA 426

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSN 380
           Y + GF E  L+LF  M +  +   + T + +L +S  I  +  G Q HS  IKSGF SN
Sbjct: 427 YVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSN 486

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
               S+L+++YAK GSI  + + F ++  R++VSWN ++    QNG A  TL  F+E++ 
Sbjct: 487 VFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVL 546

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            GL PD ++   VL AC++ G V++G+  F++M + Y + P  EHYA ++D+LC++G+  
Sbjct: 547 SGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFN 606

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL-QLPSPLPYSLLTQAY 559
           +A  + + MP  P   +W S+L A  I+ + +L    A+++ ++ +L    PY  ++  Y
Sbjct: 607 EAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIY 666

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G+WE + +V K MR  G+ K+   SW+ IK+  + F+A +  H   ++I   + +LT
Sbjct: 667 AAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLT 726

Query: 620 WEMEDEG 626
             ME+ G
Sbjct: 727 KTMEELG 733



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 250/503 (49%), Gaps = 7/503 (1%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
            I   + K GF+  T   N  +  + + G      QLF+++P KN +S N+ + G +KS 
Sbjct: 38  NIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSG 97

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           NL  A K+FD + E   V+W  +I GY+       A E+F +MQ  G  P   TF  LLS
Sbjct: 98  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 156 TVSSACHGKQI---HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +    G QI      +I+ G   S +++GN+L+D Y K   L  A  +F  M E+D +
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYD-SRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSV 216

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           S+N++I+G    G  E A++ F  M+ SG  P E+T + V+ A   L ++  G+Q+ +  
Sbjct: 217 SYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFV 276

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K  F+ N  V +A +D +SK + + D+ +LF+++   D    NV+IS Y   G  + A 
Sbjct: 277 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAF 336

Query: 333 ELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF+ +        +F  + +LS +      E G Q H+  I +  DS  +V +SL++MY
Sbjct: 337 DLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMY 396

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G  + +  IF  L  R  V W  ++    Q G   E L +F ++ +  +  D+ T A
Sbjct: 397 AKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFA 456

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           ++L A      +  G  + S + +  G M      + ++D+  + G +  A+     MP 
Sbjct: 457 SLLRASASIASLSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD 515

Query: 512 QPGCSIWESILRASAIYGDVKLT 534
           +   S W +++ A A  G+ + T
Sbjct: 516 RNIVS-WNAMISAYAQNGEAEAT 537



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 130/281 (46%), Gaps = 36/281 (12%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           ++  + IH        ++   +GN  +D+Y++ G  ++   +F  +  ++ + W      
Sbjct: 367 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPW------ 420

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                     +MIS Y   G+ +  L++F+KM+   V     TF
Sbjct: 421 -------------------------TAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 455

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LL   ++++S   GKQ+H  +I+SG  +SNV  G++L+D+Y K G +  A   F  M 
Sbjct: 456 ASLLRASASIASLSLGKQLHSFIIKSGF-MSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 514

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + +I+SWN++IS    +G  E  L  F  M  SG  PD  +   V++AC+    +++G  
Sbjct: 515 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW 574

Query: 268 VFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            F    ++  L       ++ +D+  +  R  ++ +L  ++
Sbjct: 575 HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEM 615



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 55/275 (20%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V     ++ S L+    S  S    K +H  + K GF ++ + G+  LD+Y++ G
Sbjct: 443 MRQASVIADQATFAS-LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCG 501

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +  D +Q F E+P +N +SWN                               +MIS YA 
Sbjct: 502 SIKDAVQTFQEMPDRNIVSWN-------------------------------AMISAYAQ 530

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGL----SLSNV 180
            G ++  L+ F +M L G++P   +F  +LS  S        H  ++  GL    S++ +
Sbjct: 531 NGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS--------HSGLVEEGLWHFNSMTQI 582

Query: 181 VLGN-------SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGEL 229
              +       S++DM  + G    A  +   M  + D I W+S+++ C    N      
Sbjct: 583 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 642

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           A DQ ++M     +     +S +  A  +  N+ K
Sbjct: 643 AADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSK 677


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 304/541 (56%), Gaps = 7/541 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVS 158
           A +VFD +   + VSW +M+SGYA+   S+ A E+F  M Q   +  + F  + +LS VS
Sbjct: 177 AKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVS 236

Query: 159 ---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G Q+HG +++ GL +  V + NSL+ MY K   +  A  VF + +E + I+W+
Sbjct: 237 VPLGLLMGTQLHGLVLKDGL-VGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWS 295

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++I+G   +G    A   F  M  SG++P E+T   V+NAC+ +  L  GKQ   L VK+
Sbjct: 296 AMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKL 355

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALEL 334
           GF +   V SA +D+++KC  + D+   F QL D  D  +   MI+ + + G  E AL L
Sbjct: 356 GFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALML 415

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           +  M ++ I P+  T++ VL +   +  ++ G Q H+  +K  F     V ++L  MY+K
Sbjct: 416 YSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSK 475

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G+++ S  +F ++  RD++SWN+I+   +Q+GR ++ LD+FEE+  EG  PD IT   +
Sbjct: 476 CGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINL 535

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++ G VD+G   F AM ++Y ++P  +HYAC++D+L +AGQL +A D   ++    
Sbjct: 536 LSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQLKEAKDFIDSITIDH 595

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G  +W  +L A     D  +     E++M+L       Y LL+  YA + +W  + RV+ 
Sbjct: 596 GTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRH 655

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECD 633
           +MR  G++K  GCSW+ + NR++ F  GE QH   + I + L  L   M+DE C   + +
Sbjct: 656 LMRLRGVSKDLGCSWVELYNRVHVFVVGEQQHPEAENINVELIRLAKHMKDEECFLFDDE 715

Query: 634 K 634
           K
Sbjct: 716 K 716



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 145/268 (54%), Gaps = 5/268 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K++ +D A++VF    E + ++W++MI+GYA  G ++ A  MF +M   G  P+ FTF  
Sbjct: 272 KAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVG 331

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L+  S   +   GKQ H  M++ G   + V + ++L+DMY K G +  A   F  + ++
Sbjct: 332 VLNACSDMGALVVGKQTHCLMVKLGFE-TQVYVKSALVDMYAKCGCIGDAKDGFHQLYDV 390

Query: 210 -DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++ W ++I+G   +G  E AL  +  M   G  P   T++ V+ AC  L  LD GKQ+
Sbjct: 391 DDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQL 450

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A  +K  F     V +A   ++SKC  LEDS+ +F ++   D    N +IS + ++G G
Sbjct: 451 HAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRG 510

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSS 356
             AL++F+ M  E   P   T   +LS+
Sbjct: 511 SDALDMFEEMKLEGTAPDHITFINLLSA 538



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 185/382 (48%), Gaps = 13/382 (3%)

Query: 97  LDTALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKM--QLQGVRPSGFTFSI 152
           L  A  VF +IP    DV SWNS+++   S  +   AL  F  M    + V PS  +F+ 
Sbjct: 67  LGAAYVVFADIPAALRDVASWNSLLNPL-SRHHPVSALSHFRSMMSSPEAVLPSPHSFAA 125

Query: 153 LLST---VSSACHGKQIHGSMIR--SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             +    V SA  G   H    +  S    +NV +  +L++MY KLG +  A  VF  M 
Sbjct: 126 AFTAAARVPSASAGAVTHALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGML 185

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGK 266
             + +SW +++SG       E A + F  M +      +E+  + V++A +    L  G 
Sbjct: 186 HRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGT 245

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+  L +K G +    V ++ + +++K   ++ ++R+F      +    + MI+ Y + G
Sbjct: 246 QLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNG 305

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               A  +F  M      PTEFT   VL++   +  +  G Q H + +K GF++   V S
Sbjct: 306 EANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKS 365

Query: 386 SLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +L++MYAK G I  + + F +L D  D+V W  ++ G  QNG   E L ++  + ++G+ 
Sbjct: 366 ALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGII 425

Query: 445 PDRITLAAVLLACNYGGFVDKG 466
           P  +T+ +VL AC     +D G
Sbjct: 426 PSYLTVTSVLRACACLAALDLG 447



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 130/284 (45%), Gaps = 35/284 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C    +    K  H  + KLGF    Y+ +  +D+Y++ G   D    F ++   +
Sbjct: 332 VLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVD 391

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                         DVV W +MI+G+   G  + AL ++S+M  
Sbjct: 392 ------------------------------DVVLWTAMITGHVQNGEHEEALMLYSRMDK 421

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           QG+ PS  T + +L   +       GKQ+H  +++   SL   V G +L  MY K G L 
Sbjct: 422 QGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSV-GTALSTMYSKCGNLE 480

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  VF  M + D+ISWNS+IS     G G  ALD F  M+  G +PD  T   +++AC+
Sbjct: 481 DSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACS 540

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
            +  +D+G   F A++     +      +  +D+ S+  +L+++
Sbjct: 541 HMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQLKEA 584



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 31/140 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    + D  K +H  + K  F+    +G     +YS+ G              
Sbjct: 432 TSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCG-------------- 477

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            NL+ ++ VF  +P+ DV+SWNS+IS ++  G    AL+MF +M
Sbjct: 478 -----------------NLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEM 520

Query: 139 QLQGVRPSGFTFSILLSTVS 158
           +L+G  P   TF  LLS  S
Sbjct: 521 KLEGTAPDHITFINLLSACS 540


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/537 (32%), Positives = 295/537 (54%), Gaps = 5/537 (0%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K   ++   +VF ++ + +VVSW ++I+G    GY+  AL  FS+M +  V     TF+
Sbjct: 203 MKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFA 262

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           I L   + +    HGK IH   I+ G   S+ V+ N+L  MY K G   Y   +F  M+ 
Sbjct: 263 IALKASADSSLLHHGKAIHTQTIKQGFDESSFVI-NTLATMYNKCGKADYVMRLFEKMKM 321

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SW +LI+     G  E A++ F  MR S  SP++YT + VI+AC  L     G+Q+
Sbjct: 322 PDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQI 381

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +++G +    V ++ + L+SK   L+ +  +F  + R D    + +I+ Y + G+ 
Sbjct: 382 HGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYA 441

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + A +    M RE  +P EF LS VLS    +  +E G Q H+  +  G D  A+V S+L
Sbjct: 442 KEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSAL 501

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY+K GS++ +++IF  +   +++SW  ++ G  ++G + E +++FE++   GL PD 
Sbjct: 502 ISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDY 561

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   VL AC++ G VD G   F  M  EY + P +EHY CIIDLLC+AG+L +A  +  
Sbjct: 562 VTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIR 621

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           +MP      +W ++LR+  ++GDV      AE+++ L   S   +  L   YA +GRW+ 
Sbjct: 622 SMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKE 681

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
              ++K+M+  G+ K  G SW+ + +++  F AG+  H   + I  VL LL+  + D
Sbjct: 682 AAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGDQAHPQSEHITTVLELLSANIGD 738



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 267/519 (51%), Gaps = 29/519 (5%)

Query: 50  TYLGNRCLD---LYSRFGTSDDVLQLFDEIPQK----------NCISWNICLRGLLKSDN 96
           T + +R LD    YS  GT+ +  +L  +  Q+          N +  N  L+ L+K   
Sbjct: 46  TAVFSRNLDSPLTYSSPGTATECRELIQQAKQEQLAQNAYSVHNMLELNSELKQLVKQGQ 105

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLS 155
           L  +  +FD++   D +SW ++I+GY +   S  AL +FS M +Q G++   F  S+ L 
Sbjct: 106 LCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALK 165

Query: 156 TVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
                 + C G+ +HG  ++SGL +++V + ++LIDMY K+G +     VF  M + +++
Sbjct: 166 ACGLGVNICFGELLHGFSVKSGL-INSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVV 224

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW ++I+G  ++GY   AL  F  M  S    D +T +I + A      L  GK +   +
Sbjct: 225 SWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQT 284

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K GF  +S V++    +++KC + +  +RLFE++   D      +I+TY + G  E A+
Sbjct: 285 IKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAV 344

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           E F+ M + ++ P ++T + V+S+   +   + G Q H   ++ G      VA+S++ +Y
Sbjct: 345 EAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLY 404

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K+G + S++ +F  + ++D++SW+TI+   +Q G A E  D    +  EG  P+   L+
Sbjct: 405 SKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALS 464

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITS 507
           +VL  C     +++G  V + +     +  G +H    ++ +I +  + G + +A  I +
Sbjct: 465 SVLSVCGSMALLEQGKQVHAHV-----LCIGIDHEAMVHSALISMYSKCGSVEEASKIFN 519

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            M      S W +++   A +G  +   N+ E++  + L
Sbjct: 520 GMKINNIIS-WTAMINGYAEHGYSQEAINLFEKISSVGL 557



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 168/325 (51%), Gaps = 35/325 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    K GF+  +++ N    +Y++ G +D V++LF+++   + +SW          
Sbjct: 278 KAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSW---------- 327

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                 ++I+ Y   G  ++A+E F +M+   V P+ +TF+ ++
Sbjct: 328 ---------------------TTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVI 366

Query: 155 STVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  ++   A  G+QIHG ++R GL +  + + NS++ +Y K G+L  A  VF  +   DI
Sbjct: 367 SACANLAIAKWGEQIHGHVLRLGL-VDALSVANSIVTLYSKSGLLKSASLVFHGITRKDI 425

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           ISW+++I+     GY + A D    MR  G  P+E+ +S V++ C  +  L++GKQV A 
Sbjct: 426 ISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAH 485

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            + +G    ++V SA I ++SKC  +E++ ++F  +   +      MI+ Y  +G+ + A
Sbjct: 486 VLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEA 545

Query: 332 LELFQLMLREDIRPTEFTLSCVLSS 356
           + LF+ +    ++P   T   VL++
Sbjct: 546 INLFEKISSVGLKPDYVTFIGVLTA 570



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 31/142 (21%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S    +  K +H H+  +G +    + +  + +YS+ G+ ++  ++F+ +  
Sbjct: 464 SSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKI 523

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N ISW                                +MI+GYA  GYS  A+ +F K+
Sbjct: 524 NNIISWT-------------------------------AMINGYAEHGYSQEAINLFEKI 552

Query: 139 QLQGVRPSGFTFSILLSTVSSA 160
              G++P   TF  +L+  S A
Sbjct: 553 SSVGLKPDYVTFIGVLTACSHA 574


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 206/621 (33%), Positives = 326/621 (52%), Gaps = 17/621 (2%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C++ +     K +H   FK      TYL N    LYS+ G+  +    F      
Sbjct: 14  NLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYP 73

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S+N  +    K   +  A +VFDEIP+PD+VS+N++I+ YA  G     L +F +++
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 140 LQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
              +   GFT    LS V +AC       +Q+H  ++  G      V  N+++  Y + G
Sbjct: 134 ELRLGLDGFT----LSGVITACGDDVGLVRQLHCFVVVCGHDCYASV-NNAVLACYSRKG 188

Query: 195 VLYYAFGVFLNMEE---LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
            L  A  VF  M E    D +SWN++I  C     G  A+  F  M   G   D +T++ 
Sbjct: 189 FLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMAS 248

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRW 310
           V+ A T +++L  G+Q   + +K GF  NS V S  IDL+SKC   + +  ++FE++   
Sbjct: 249 VLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAP 308

Query: 311 DYAVINVMISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
           D  + N MIS +  Y    E  L  F+ M R   RP + +  CV S+   +     G Q 
Sbjct: 309 DLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQV 368

Query: 369 HSMAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           H++AIKS    N V V ++L+ MY+K G++  +  +F  + + + VS N+++ G  Q+G 
Sbjct: 369 HALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGV 428

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             E+L +FE +LE+ + P+ IT  AVL AC + G V++G   F+ MKE + + P  EHY+
Sbjct: 429 EVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYS 488

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C+IDLL +AG+L +A  I  TMPF PG   W ++L A   +G+V+L    A   + L+  
Sbjct: 489 CMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPY 548

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           +  PY +L+  YA   RWE    VK++MR+ G+ K  GCSWI I  +++ F A +  H  
Sbjct: 549 NAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPM 608

Query: 608 GQKIYLVLRLLTWEMEDEGCV 628
            ++I++ +  +  +M+  G V
Sbjct: 609 IKEIHVYMGKMLKKMKQAGYV 629


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 199/678 (29%), Positives = 335/678 (49%), Gaps = 81/678 (11%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           SF  A+ +H H+   GF    +  NR L++Y +        QLF+EIP  + I+    + 
Sbjct: 28  SFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLIT 87

Query: 90  GLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                 NL+   ++F+  P    D V +N+MI+GYA  G    ALE+F  M+    RP  
Sbjct: 88  AYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDD 147

Query: 148 FTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK----LGV---- 195
           FTF+ +LS     V +     Q+H +++++G+   +  + N+L+ +Y K    LG+    
Sbjct: 148 FTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSA 207

Query: 196 -------------------------------LYYAFGVFLNMEELDIISWNSLISGCFNS 224
                                          L  A  VF  M E    +WN++ISG  + 
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV--------------FA 270
           G  + AL     MR+ G   D+ T + +I+AC  + +   GKQV              F 
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFC 327

Query: 271 LSVKVGFLS---------------------NSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           LSV    ++                     N I  +A +  +    R+E++   FE++  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQF 368
            +   + VMIS   + GFG+  L+LF+ M  +   P +F  +  L++  +   +E+G Q 
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  +  G++S+  V ++++ MYAK G ++++  +FV +   DLVSWN+++  L Q+G  
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHG 507

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            + +++F+++L+EG+ PDRIT   VL AC++ G V+KG   F++M E YG+ P E+HYA 
Sbjct: 508 VKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYAR 567

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           ++DL C+AG    A  +  +MP +PG  +WE++L    I+G++ L    AE++  L   +
Sbjct: 568 MVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQN 627

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
              Y LL+  YA  GRW  + +V+K+MR   + K   CSWI ++N+++ F   +  H   
Sbjct: 628 DGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEV 687

Query: 609 QKIYLVLRLLTWEMEDEG 626
             +Y  L  L  EM+  G
Sbjct: 688 LSVYRYLEQLGLEMKKLG 705



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 169/339 (49%), Gaps = 18/339 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNA-HTY---LGNRCLDLYSRFGTSDDVLQLFD 74
           + +I  C +  SF   K +H ++ K   N  H++   + N  + LY +    D+  ++F 
Sbjct: 293 TTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +P +N I+WN  L G + +  ++ A   F+E+P  ++++   MISG A  G+ D  L++
Sbjct: 353 AMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 135 FSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M+L G  P  F F+  L+  S   +  +G+Q+H  ++  G   S++ +GN++I MY 
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYE-SSLSVGNAMISMYA 471

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K GV+  A  VF+ M  +D++SWNS+I+     G+G  A++ F  M   G  PD  T   
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLE------DSVRLF 304
           V+ AC+    ++KG+  F ++    G        +  +DLF +           DS+   
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 305 EQLDRWDYAVINVMISTYGRYGFG-EVALELFQLMLRED 342
                W+  +    I  +G    G E A +LF+LM + D
Sbjct: 592 PGAPVWEALLAGCRI--HGNMDLGIEAAEQLFKLMPQND 628


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/543 (32%), Positives = 317/543 (58%), Gaps = 17/543 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L++A KVFD +P+ +VV+W  MI+ +   G+S  A+++F  M L G  P  FT    LS
Sbjct: 94  DLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFT----LS 149

Query: 156 TVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLN 205
            V SAC        G+Q H  +++SGL L +V +G SL+DMY K    G +  A  VF  
Sbjct: 150 GVVSACAEMGLLSLGRQFHCLVMKSGLDL-DVCVGCSLVDMYAKCVADGSVDDARKVFDR 208

Query: 206 MEELDIISWNSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           M   +++SW ++I+G   SG  +  A++ F  M      P+ +T S V+ AC  L ++  
Sbjct: 209 MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL 268

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+QV+AL VK+   S + V ++ I ++S+C  +E++ + F+ L   +    N +++ Y +
Sbjct: 269 GEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAK 328

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
               E A ELF  +         FT + +LS +  I  +  G Q HS  +KSGF SN  +
Sbjct: 329 SLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHI 388

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L+ MY++ G+I+++ ++F ++   +++SW +++ G  ++G A   L+ F ++LE G+
Sbjct: 389 CNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGV 448

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P+ +T  AVL AC++ G + +G+  F +MK E+G++P  EHYAC++DLL ++G L +A+
Sbjct: 449 SPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAM 508

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           ++ ++MPF+    +  + L A  ++G++ L ++ AE +++     P  Y LL+  +A  G
Sbjct: 509 ELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAG 568

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +WE +  ++K M++  + K  GCSWI ++N+++ F  G+  H   Q+IY  L  L  +++
Sbjct: 569 QWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIK 628

Query: 624 DEG 626
           + G
Sbjct: 629 ELG 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 244/481 (50%), Gaps = 13/481 (2%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIH 167
           D+VSW+++IS YA+   +  A+  F  M   G  P+ + F+ +    S+  +   GK I 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           G ++++G   S+V +G +LIDM+ K  G L  A+ VF  M + ++++W  +I+     G+
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
              A+D F  M  SGY PD +T+S V++AC ++  L  G+Q   L +K G   +  V  +
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 287 TIDLFSKC---NRLEDSVRLFEQLDRWDYAVINVMISTYGRY-GFGEVALELFQLMLRED 342
            +D+++KC     ++D+ ++F+++   +      +I+ Y +  G    A+ELF  M++  
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++P  FT S VL +   +  +  G Q +++ +K    S   V +SL+ MY++ G+++++ 
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           + F  L +++LVS+NTI+    ++  + E  ++F E+   G   +  T A++L   +  G
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            + KG  + S + +  G          +I +  + G +  A  + + M      S W S+
Sbjct: 366 AIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVIS-WTSM 423

Query: 522 LRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRW-EAIVRVKKVMRKNG 579
           +   A +G          +M++  + P+ + Y  +  A +  G   E +   K +  ++G
Sbjct: 424 ITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHG 483

Query: 580 I 580
           I
Sbjct: 484 I 484



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 177/403 (43%), Gaps = 80/403 (19%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF---GTSDDVLQLFDE 75
           S ++  C         +  H  + K G +    +G   +D+Y++    G+ DD  ++FD 
Sbjct: 149 SGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDR 208

Query: 76  IPQKNCISWNICLRGLLKSDNLD-TALKVFDEIPEPDVVS------------------W- 115
           +P  N +SW   + G ++S   D  A+++F E+ +  V                    W 
Sbjct: 209 MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWL 268

Query: 116 --------------------NSMISGYASCG----------------------------- 126
                               NS+IS Y+ CG                             
Sbjct: 269 GEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAK 328

Query: 127 --YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVV 181
              S+ A E+F++++  G   + FTF+ LLS  SS      G+QIH  +++SG   SN+ 
Sbjct: 329 SLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFK-SNLH 387

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N+LI MY + G +  AF VF  M + ++ISW S+I+G    G+   AL+ F+ M  +G
Sbjct: 388 ICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAG 447

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
            SP+E T   V++AC+ +  + +G + F ++ V+ G +      +  +DL  +   LE++
Sbjct: 448 VSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEA 507

Query: 301 VRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           + L   +  + D  V+   +     +G  ++     +++L +D
Sbjct: 508 MELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQD 550



 Score = 45.4 bits (106), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
           +KRDLVSW+ ++     N +A E +  F ++LE G  P+      V  AC+    +  G 
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 468 LVFSAMKEEYGVMPGEEHYAC-IIDLLCQA-GQLGKAIDITSTMP 510
           ++F  + +  G    +    C +ID+  +  G L  A  +   MP
Sbjct: 63  IIFGFLLKT-GYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP 106


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 319/612 (52%), Gaps = 41/612 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C+   S +    +H  +   GF +HT++    L++Y++    +D          
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIED---------- 224

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                + KVF+ + E +VVSWN+MI+G+ S      A ++F +M
Sbjct: 225 ---------------------SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 139 QLQGVRPSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P   TF   +  +  +      K++ G  +  G+  SN ++G +LIDM  K G 
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVD-SNTLVGTALIDMNSKCGS 322

Query: 196 LYYAFGVFLNMEELDI---ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           L  A  +F N   +       WN++ISG   SG+ E AL+ F  M  +    D YT   V
Sbjct: 323 LQEARSIF-NSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSV 381

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDRWD 311
            NA   L+ L  GK+V A ++K G   N + +S A  + ++KC  LED  ++F +++  D
Sbjct: 382 FNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRD 441

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
                 +++ Y +    + A+E+F  M  E I P +FT S VL S   +  +E+G Q H 
Sbjct: 442 LISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHG 501

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           +  K G D +  + S+L++MYAK G +  + ++F ++   D VSW  I+ G  Q+G   +
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +F  +++ G+ P+ +T   VL AC++GG V++G+  F  MK+ YG++P  EHYACI+
Sbjct: 562 ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIV 621

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL + G L  A++  S MP +P   +W+++L A  ++G+V+L E  A++++  +  +  
Sbjct: 622 DLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSA 681

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  Y   G ++  + ++ +M++ G+ K  GCSWI +   ++ F AG+ QH    K
Sbjct: 682 TYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDK 741

Query: 611 IYLVLRLLTWEM 622
           IY  L  L  ++
Sbjct: 742 IYAKLEELKLKL 753



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 158/572 (27%), Positives = 284/572 (49%), Gaps = 54/572 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+  +    AKT+HG L K  F+ H  L                            
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSL---------------------------- 105

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +  N       K  ++D A ++FD++ + +  SW  +I+G A  G      E F +MQ 
Sbjct: 106 -VLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQS 164

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           QG+ P  F +S +L     + S   G  +H  ++  G + S+  +  +L++MY KL  + 
Sbjct: 165 QGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFT-SHTFVSTALLNMYAKLQEIE 223

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            ++ VF  M E++++SWN++I+G  ++     A D F  M   G +PD  T   V  A  
Sbjct: 224 DSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIG 283

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ---LDRWDYAV 314
            LR+++K K+V   ++++G  SN++V +A ID+ SKC  L+++  +F       R++ A 
Sbjct: 284 MLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFN-AP 342

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAI 373
            N MIS Y R GF E ALELF  M + DI    +T   V ++I  +  +  G + H+ AI
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402

Query: 374 KSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           KSG + N V +++++   YAK GS++   ++F +++ RDL+SW +++   +Q     + +
Sbjct: 403 KSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAI 462

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM--PGEEHYACI- 489
           ++F  +  EG+ P++ T ++VL++C     ++ G  V       +G++   G +   CI 
Sbjct: 463 EIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQV-------HGIICKVGLDMDKCIE 515

Query: 490 ---IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
              +D+  + G LG A  + + +      S W +I+   A +G V     +  RM+ L +
Sbjct: 516 SALVDMYAKCGCLGDAKKVFNRISNADTVS-WTAIIAGHAQHGIVDDALQLFRRMVQLGV 574

Query: 547 -PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
            P+ + +  +  A +  G  E  ++  K+M+K
Sbjct: 575 EPNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 196/611 (32%), Positives = 317/611 (51%), Gaps = 47/611 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C+   S +  K +H  +   GF  H ++    L++Y++ G+ +D          
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY-------- 222

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                W                  VF+ + E + VSWN+MISG  S G    A ++F +M
Sbjct: 223 -----W------------------VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM 259

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +     P+ +T    L +VS A         GK++       G+   NV++G +LIDMY 
Sbjct: 260 KNGACTPNMYT----LVSVSKAVGKLVDVNMGKEVQNCASELGIE-GNVLVGTALIDMYS 314

Query: 192 KLGVLYYAFGVF-LNMEELDI-ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           K G L+ A  VF  N     +   WN++ISG   SG  + AL+ +  M  +G + D YT 
Sbjct: 315 KCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTY 374

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
             V NA    ++L  G+ V  + +K G  L    V +A  D +SKC  LED  ++F++++
Sbjct: 375 CSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME 434

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQ 367
             D      +++ Y +   GE AL  F LM  E   P +FT S VL S   +  +E+G Q
Sbjct: 435 ERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQ 494

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H +  K+G D+   + S+L++MYAK GSI  + ++F K+   D+VSW  I+ G  Q+G 
Sbjct: 495 VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGL 554

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             + L +F  +   G+  + +TL  VL AC++GG V++G+  F  M++ YGV+P  EHYA
Sbjct: 555 VEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYA 614

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           CIIDLL + G+L  A++    MP +P   +W+++L    ++G+V+L E  A +++ ++  
Sbjct: 615 CIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPE 674

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
               Y LL+  Y   G +E  + ++ VM+  G+ K  G SWI +K R++ F +G+ QH  
Sbjct: 675 YSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQ 734

Query: 608 GQKIYLVLRLL 618
            ++IY+ L  L
Sbjct: 735 KKEIYVKLEEL 745



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 237/465 (50%), Gaps = 28/465 (6%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K      A  VFDE+P+ +V SW  MI G    G      + F +M   G+ P  F +S 
Sbjct: 113 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 172

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++ +   + S   GK +H  ++  G + +++ +  SL++MY KLG +  ++ VF  M E 
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFA-THIFVSTSLLNMYAKLGSIEDSYWVFNMMTEH 231

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + +SWN++ISGC ++G    A D F  M+    +P+ YT+  V  A  KL +++ GK+V 
Sbjct: 232 NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 291

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGF 327
             + ++G   N +V +A ID++SKC  L D+  +F+   ++       N MIS Y + G 
Sbjct: 292 NCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 351

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAV-VAS 385
            + ALEL+  M +  I    +T   V ++I     ++ G   H M +K G D   V V +
Sbjct: 352 SQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNN 411

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           ++ + Y+K G ++   ++F ++++RD+VSW T++   +Q+    E L  F  + EEG  P
Sbjct: 412 AIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAP 471

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM--PGEEHYACI----IDLLCQAGQL 499
           ++ T ++VL++C    F++ G       ++ +G++   G +   CI    ID+  + G +
Sbjct: 472 NQFTFSSVLISCASLCFLEYG-------RQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 524

Query: 500 ---GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
              GK  D  S     P    W +I+   A +G V+    +  RM
Sbjct: 525 TEAGKVFDKISN----PDIVSWTAIISGYAQHGLVEDALQLFRRM 565



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 4/299 (1%)

Query: 162 HGKQIHGSMIRSGLSLSNV-VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             K +HG +++S     ++ VL N    +Y K      A GVF  M + ++ SW  +I G
Sbjct: 82  EAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVG 141

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
               G        F  M  SG  PD++  S +I +C  L +L+ GK V A  V  GF ++
Sbjct: 142 STEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATH 201

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V ++ +++++K   +EDS  +F  +   +    N MIS     G    A +LF  M  
Sbjct: 202 IFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKN 261

Query: 341 EDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
               P  +TL  V  ++  +  V  G +  + A + G + N +V ++L++MY+K GS+  
Sbjct: 262 GACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHD 321

Query: 400 STEIFVK--LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +  +F    ++      WN ++ G +Q+G + E L+++ ++ + G+  D  T  +V  A
Sbjct: 322 ARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNA 380



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 182/413 (44%), Gaps = 60/413 (14%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFD 74
           +YCS + +   + KS  F + +HG + K G +     + N   D YS+ G  +DV ++FD
Sbjct: 373 TYCS-VFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFD 431

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            + +++                               +VSW ++++ Y+     + AL  
Sbjct: 432 RMEERD-------------------------------IVSWTTLVTAYSQSSLGEEALAT 460

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M+ +G  P+ FTFS +L + +S C   +G+Q+HG + ++GL     +  ++LIDMY 
Sbjct: 461 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCI-ESALIDMYA 519

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  VF  +   DI+SW ++ISG    G  E AL  F  M  SG   +  T+  
Sbjct: 520 KCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 579

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL--- 307
           V+ AC+    +++G   F  +    G +      +  IDL  +  RL+D++    ++   
Sbjct: 580 VLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME 639

Query: 308 -DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGS 366
            +   +  +      +G    GE+A           IRP E++ + VL S     +E GS
Sbjct: 640 PNEMVWQTLLGGCRVHGNVELGEIAARKIL-----SIRP-EYSATYVLLSNTY--IETGS 691

Query: 367 QFHSMAIKSGFDSNAV----------VASSLMEMYAKTGSIDSSTEIFVKLDK 409
               +++++      V          V   + + Y+         EI+VKL++
Sbjct: 692 YEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEE 744



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 362 VEHGSQFHSMAIKSGFDSN--AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
           +      H + +KS F+     V+ +    +Y+K     ++  +F ++ +R++ SW  ++
Sbjct: 80  IREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMI 139

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           +G T++G   +    F E+L  G+ PD+   +A++ +C
Sbjct: 140 VGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC 177


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 201/614 (32%), Positives = 316/614 (51%), Gaps = 38/614 (6%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L++     KS   A  IH  L     +A     N  L LY++ G+    L LF+  P  
Sbjct: 102 HLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPH- 160

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                                       P  +VV+W ++I+  +       AL  F++M+
Sbjct: 161 ----------------------------PSTNVVTWTTLINQLSRSNKPFQALTFFNRMR 192

Query: 140 LQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G+ P+ FTFS +L   + A     G+QIH ++I     L++  +  +L+DMY K G +
Sbjct: 193 TTGIYPNHFTFSAILPACAHAALLSEGQQIH-ALIHKHCFLNDPFVATALLDMYAKCGSM 251

Query: 197 YYAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  VF  M   +++SWNS+I G   N  YG  A+  F  +   G  PD+ +IS V++A
Sbjct: 252 LLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGR-AIGVFREVLSLG--PDQVSISSVLSA 308

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  LD GKQV    VK G +    V ++ +D++ KC   ED+ +LF      D    
Sbjct: 309 CAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTW 368

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIK 374
           NVMI    R    E A   FQ M+RE + P E + S +  +S  I  +  G+  HS  +K
Sbjct: 369 NVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLK 428

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G   N+ ++SSL+ MY K GS+  + ++F +  + ++V W  ++    Q+G A E + +
Sbjct: 429 TGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKL 488

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FEE+L EG+ P+ IT  +VL AC++ G +D G   F++M   + + PG EHYAC++DLL 
Sbjct: 489 FEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLG 548

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G+L +A     +MPF+P   +W ++L A   + +V++   VAER+  L+  +P  Y L
Sbjct: 549 RVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYML 608

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  Y   G  E    V+++M  NG+ K +GCSWI +KNR + FNA +  H   Q+IY +
Sbjct: 609 LSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGM 668

Query: 615 LRLLTWEMEDEGCV 628
           L+ L   ++  G V
Sbjct: 669 LQKLKELIKRRGYV 682



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 200/437 (45%), Gaps = 48/437 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C         + IH  + K  F    ++    LD+Y++ G+      +FDE+P 
Sbjct: 204 SAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPH 263

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFS 136
           +N +SWN  + G +K+     A+ VF E+    PD VS +S++S  A     D+      
Sbjct: 264 RNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDF------ 317

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                     GKQ+HGS+++ GL +  V + NSL+DMY K G+ 
Sbjct: 318 --------------------------GKQVHGSIVKRGL-VGLVYVKNSLVDMYCKCGLF 350

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F    + D+++WN +I GCF     E A   F +M   G  PDE + S + +A 
Sbjct: 351 EDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHAS 410

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             +  L +G  + +  +K G + NS + S+ + ++ KC  + D+ ++F +    +     
Sbjct: 411 ASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWT 470

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMA-- 372
            MI+ + ++G    A++LF+ ML E + P   T   VLS+      ++ G + F+SMA  
Sbjct: 471 AMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANV 530

Query: 373 --IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAA 429
             IK G +  A     ++++  + G ++ +      +  + D + W  ++    ++    
Sbjct: 531 HNIKPGLEHYAC----MVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVE 586

Query: 430 ETLDVFEELLEEGLPPD 446
              +V E L +  L PD
Sbjct: 587 MGREVAERLFK--LEPD 601



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 146/338 (43%), Gaps = 38/338 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      DF K +HG + K G     Y+ N  +D+Y + G  +D  +LF     
Sbjct: 303 SSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGD 362

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++WN+ + G  +  N + A                        C Y       F  M
Sbjct: 363 RDVVTWNVMIMGCFRCRNFEQA------------------------CTY-------FQAM 391

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P   ++S L    +++++   G  IH  ++++G  + N  + +SL+ MYGK G 
Sbjct: 392 IREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTG-HVKNSRISSSLVTMYGKCGS 450

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A+ VF   +E +++ W ++I+     G    A+  F  M   G  P+  T   V++A
Sbjct: 451 MLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSA 510

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    +D G + F     V  +   +   A  +DL  +  RLE++ R  E +    D  
Sbjct: 511 CSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSL 570

Query: 314 VINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTL 350
           V   ++   G++   E+  E+ + + + E   P  + L
Sbjct: 571 VWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYML 608


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/595 (31%), Positives = 319/595 (53%), Gaps = 37/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH H+ + GF+A   + N  +D Y                  K C               
Sbjct: 165 IHSHIIRFGFSASLIVFNSLVDSYC-----------------KTCC-------------- 193

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS- 155
           LD A ++F E+P  D VS+N MI+GY   G+ + AL++F +M+    +PSGFTF+ +L  
Sbjct: 194 LDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGM 253

Query: 156 TVSS--ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +V S     G+QIHG  I++   + ++ + N+L+D Y K   +  A  +F  M ELD +S
Sbjct: 254 SVGSEDVIFGQQIHGLAIKTSY-VWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS 312

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N +I+G   +G  E + D F  ++ + +    +  + +++      NL  G+Q  A +V
Sbjct: 313 YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAV 372

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
               +S   V +A +D+++KC + ED+ R+F  L   +      +IS Y + GF E AL+
Sbjct: 373 VTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALK 432

Query: 334 LFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F+ M RE++   + T +  L +S  +  V  G Q HS  I+ G  S+    S L++MYA
Sbjct: 433 MFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYA 492

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
             GS+  + E+F ++  R++V WN ++   +QNG A  T   F +++E GL PD ++  +
Sbjct: 493 NCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLS 552

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G V+K +  F++M + Y + P  +HYA +ID+LC++G+  +A ++ S MPF+
Sbjct: 553 VLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFE 612

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMRGRWEAIVRV 571
           P   +W S+L +  I+ +  L +  A+++  +  L     Y  ++  YA  G+WE   +V
Sbjct: 613 PDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKV 672

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           KK MR+ G+ KVT  SW+ I +R++ F A +  H   ++I   +  L   M+ EG
Sbjct: 673 KKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEG 727



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 251/532 (47%), Gaps = 8/532 (1%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +   + K GF+      N  L    R        QLFDE+P +N  S N+ + G +KS N
Sbjct: 33  VDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRN 92

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A ++F+ +   + VSW  MI GY+       A  ++++M   GV+P   TF+ LLS 
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSG 152

Query: 157 VSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
                  K   QIH  +IR G S S +V  NSL+D Y K   L  A  +F  M   D +S
Sbjct: 153 FDDTTTLKEVLQIHSHIIRFGFSASLIVF-NSLVDSYCKTCCLDIASQLFSEMPTKDSVS 211

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N +I+G    G+ E AL  F  MR   + P  +T + ++       ++  G+Q+  L++
Sbjct: 212 FNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAI 271

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  ++ +  V +A +D +SK + ++ +  LF+++   D    N++I+ Y   G  E + +
Sbjct: 272 KTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFD 331

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF+ +         F  + +LS   I   +  G Q H+ A+ +   S   V ++L++MYA
Sbjct: 332 LFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYA 391

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K    + +  IF  L  R+ V W  I+    Q G   E L +F+E+  E +  D+ T A+
Sbjct: 392 KCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFAS 451

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
            L A      V  G  + S++    G++      + ++D+    G +  AI++   MP  
Sbjct: 452 TLKASANLASVSLGKQLHSSVI-RLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-D 509

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
                W +++ A +  GD + T +    M++  L P  + +  +  A + RG
Sbjct: 510 RNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRG 561



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    K +H  + +LG  +  + G+  +D+Y+  G+  D +++F E+P +N + WN  + 
Sbjct: 461 SVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALIS 520

Query: 90  GLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVR 144
              ++ + +     F ++ E    PD VS+ S+++  +  G  + AL  F+ M Q+  + 
Sbjct: 521 AYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLD 580

Query: 145 PSGFTFSILLSTV 157
           P    ++ ++  +
Sbjct: 581 PRRKHYATMIDVL 593


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 306/539 (56%), Gaps = 6/539 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D+A++V+D++   D  + N +IS YA  G+   A ++F ++   G RP+ +T+S 
Sbjct: 160 KCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYST 219

Query: 153 LLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L+   T+S+   GKQ+H  +++    LS   +GN+L+ +Y K G++  A  VF ++ + 
Sbjct: 220 MLAVCGTISAIQEGKQLHAHVVKMQY-LSETAVGNALLTLYSKCGMMEEAEIVFESLRQR 278

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +IISW + I+G +  G  + AL QF  MR SG  P+E+T SIV+ +C  +++   G+   
Sbjct: 279 NIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFH 338

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFG 328
              +K G  S   V +A ID++S    ++++ + F+Q+ R    V  N +I+ Y      
Sbjct: 339 TQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKI 398

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E A+E F  M++ED+   EFT S +  +    P +    Q HS  IKS  +SN  VASSL
Sbjct: 399 EKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSL 458

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +E Y + GS++++ ++F ++   D+VSWN+I+   +QNG   + + +  +++EEG  P  
Sbjct: 459 IEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTS 518

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
            T   VL AC++ G V +G   F +M ++Y + P E H +C++D+L +AGQL  A+D   
Sbjct: 519 XTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIK 578

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            +  +P  SIW  +L A     ++++ E VAE+++DL+      Y  L+  YA  GRW  
Sbjct: 579 KLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWAD 638

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               +++M +  I+K  GCSWI + N++Y F + +  H    K+Y  L+ L  +++D G
Sbjct: 639 AENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIG 697



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/566 (27%), Positives = 270/566 (47%), Gaps = 81/566 (14%)

Query: 35   KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
            + +H HL  +G    TY   + +  Y+  G                              
Sbjct: 823  RALHAHLVIIGLARLTYFAAKLMSFYTECG------------------------------ 852

Query: 95   DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
              L  A K+FD+IP  ++  W  +    A  G+ + AL  FS+MQ +G+RP+ F    +L
Sbjct: 853  -QLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQF----VL 907

Query: 155  STVSSACHGKQIHGSMIRSGLSLSNVVLGNS----------LIDMYGKLGVLYYAFGVFL 204
             ++  AC     H S  R+G ++  V+L NS          LI MY K G +  A  VF 
Sbjct: 908  PSILKACG----HLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 963

Query: 205  NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
             + + D++  N+++SG    G+   ALB    M+ +G  P+  + + +I   +++ +   
Sbjct: 964  WIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 1023

Query: 265  GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
              +VF L    G   + +  ++ I  F         V+ F   + +D             
Sbjct: 1024 VSEVFRLMTANGVEPDVVSWTSVISGF---------VQNFHNHEGFD------------- 1061

Query: 325  YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                      F+ ML +   P+  T+S +L +   +  + HG + H  A+  G + +  V
Sbjct: 1062 ---------AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYV 1112

Query: 384  ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
             S+L++MYAK G I  +  +F  + +R+ V+WN+++ G   +G   E +++F ++ E   
Sbjct: 1113 RSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDT 1172

Query: 444  PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
              D +T  AVL AC++ G V+ G  +F  M+E+Y + P  EHYAC++DLL +AG+L +A 
Sbjct: 1173 KLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAY 1232

Query: 504  DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            D+   MP +P   +W ++L A   +G+++L E  AE + +L+  SP    LL+  YA  G
Sbjct: 1233 DLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAG 1292

Query: 564  RWEAIVRVKKVMRKNGINKVTGCSWI 589
            RW    ++KK+M++    K  GCSWI
Sbjct: 1293 RWGNAAKMKKMMKQRKFGKFPGCSWI 1318



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 202/443 (45%), Gaps = 41/443 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +  +    K +H H+ K+ + + T +GN  L LYS+ G  ++   +F+ + Q
Sbjct: 218 STMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQ 277

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N ISW   + G  +  +   ALK                                FS M
Sbjct: 278 RNIISWTASINGFYQHGDFKKALK-------------------------------QFSMM 306

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  G+ P+ FTFSI+L++   V     G+  H  +I+ G++ S V +G ++IDMY  LG 
Sbjct: 307 RESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMA-SGVFVGTAIIDMYSGLGE 365

Query: 196 LYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +  A   F  M      +SWN+LI+G   +   E A++ F  M     + +E+T S +  
Sbjct: 366 MDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFK 425

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+   +L    Q+ +  +K    SN  V S+ I+ +++C  LE++V++F Q+   D   
Sbjct: 426 ACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVS 485

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMA 372
            N +I  Y + G    A+ L + M+ E  +PT  T   VLS+      V+ G + F SM 
Sbjct: 486 WNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMV 545

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAET 431
                       S ++++  + G ++++ +   KL  +   S W  ++     N      
Sbjct: 546 QDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMA 605

Query: 432 LDVFEELLEEGLPPDRITLAAVL 454
             V E++L+  L P+  T+   L
Sbjct: 606 EYVAEKILD--LEPNDATVYVTL 626



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 222/470 (47%), Gaps = 26/470 (5%)

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE--- 133
           P K C+S    + G +   +L+ A  +F++ P+   VS    I+     G +D   E   
Sbjct: 39  PYKGCMSKGNVVGGWV---DLNNACILFEKTPKRIGVS----ITESHRSGCTDDPEEGVK 91

Query: 134 ---MFSKMQLQGVRPSG------FTFSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVL 182
               F++ +   V   G      + FS L       C   G++ H  +++ GL  S+  +
Sbjct: 92  EAGFFTRNETPHVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLG-SDEFV 150

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
             SLIDMY K G +  A  V+  M  LD  + N LIS    +G+   A   F  +   G 
Sbjct: 151 CTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGT 210

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
            P+ YT S ++  C  +  + +GKQ+ A  VK+ +LS + V +A + L+SKC  +E++  
Sbjct: 211 RPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEI 270

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPP 361
           +FE L + +       I+ + ++G  + AL+ F +M    I P EFT S VL+S   +  
Sbjct: 271 VFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKD 330

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMM 420
              G  FH+  IK G  S   V +++++MY+  G +D + + F ++ +    VSWN ++ 
Sbjct: 331 FIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIA 390

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G   N +  + ++ F  +++E +  +  T + +  AC+    +   + + S + +   V 
Sbjct: 391 GYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS-NVE 449

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
                 + +I+   Q G L  A+ + + +      S W SI++A +  GD
Sbjct: 450 SNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVS-WNSIIKAYSQNGD 498



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 170/375 (45%), Gaps = 49/375 (13%)

Query: 163  GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            G+ +H  ++  GL+         L+  Y + G L  A  +F  +   +I  W  L   C 
Sbjct: 822  GRALHAHLVIIGLA-RLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACA 880

Query: 223  NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
              G+ E AL  F  M+  G  P+++ +  ++ AC  L +   G+ +  + +K  F S++ 
Sbjct: 881  RRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAY 940

Query: 283  VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
            ++SA I ++SKC  +E + R+F+ +   D  V+N M+S Y ++GF   AL+L Q M +  
Sbjct: 941  IISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAG 1000

Query: 343  IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            ++P                                  N V  ++L+  +++ G     +E
Sbjct: 1001 VKP----------------------------------NVVSWNTLIAGFSQVGDKSMVSE 1026

Query: 403  IFVKLD----KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +F  +     + D+VSW +++ G  QN    E  D F+E+L++G  P  +T++++L AC 
Sbjct: 1027 VFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACT 1086

Query: 459  YGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITSTMPFQPG 514
                +  G  +       Y ++ G E      + ++D+  + G + +A  +   MP +  
Sbjct: 1087 NVANLRHGKEIHG-----YAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP-ERN 1140

Query: 515  CSIWESILRASAIYG 529
               W S++   A +G
Sbjct: 1141 TVTWNSLIFGYANHG 1155



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 8/276 (2%)

Query: 243  SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
            S D Y  +I + A  + R L +G+ + A  V +G    +   +  +  +++C +L ++ +
Sbjct: 802  SSDTYAKAIDMYA--RDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARK 859

Query: 303  LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPP 361
            LF+++   +     V+     R GF E AL  F  M +E +RP +F L  +L +   +  
Sbjct: 860  LFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSD 919

Query: 362  VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
               G   H++ +K+ F+S+A + S+L+ MY+K G ++ +  +F  +  +DLV  N ++ G
Sbjct: 920  RRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSG 979

Query: 422  LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML--VFSAMKEEYGV 479
              Q+G   E LB+ +++ + G+ P+ ++   ++   +  G  DK M+  VF  M    GV
Sbjct: 980  YAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVG--DKSMVSEVFRLMTAN-GV 1036

Query: 480  MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
             P    +  +I    Q     +  D    M  Q  C
Sbjct: 1037 EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFC 1072



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 51/224 (22%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            S L+  C +  +    K IHG+   +G     Y+ +  +D+Y++ G   +   LF  +P+
Sbjct: 1079 SSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPE 1138

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +N ++WN                               S+I GYA+ GY + A+E+F++M
Sbjct: 1139 RNTVTWN-------------------------------SLIFGYANHGYCNEAIELFNQM 1167

Query: 139  QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
            +    +    TF+ +L+  S        H  M+  G SL   +               ++
Sbjct: 1168 EESDTKLDHLTFTAVLNACS--------HAGMVELGESLFXKMQEKYRIEPRLEHYACMV 1219

Query: 188  DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
            D+ G+ G L  A+ +   M  E D   W +L+  C N G  ELA
Sbjct: 1220 DLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELA 1263


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/601 (29%), Positives = 317/601 (52%), Gaps = 40/601 (6%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +++ C   +  C   ++ +  K +H  +   GF+         +++YS+ G   + + +F
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVF 69

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                         +D   E +V ++N++ISG+ S G +    +
Sbjct: 70  ------------------------------YDPCHERNVFAYNAIISGFVSNGLASKGFQ 99

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            + KM+L+GV P  +TF  ++ T       K+IHG +++ GL L +V +G++L++ Y K 
Sbjct: 100 FYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLEL-DVFVGSALVNTYLKN 158

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  VF  +   D++ WN++I+G    G  + AL+ F  M   G +P  +TI+ ++
Sbjct: 159 GSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGIL 218

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +      +LD GK V  + +K+G+ S   V +A ID++ KC  + D++ +FE ++  D  
Sbjct: 219 SVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIF 278

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
             N +IS + + G  +  L LF  ML   I P   T++ VL +   +  + HG + H   
Sbjct: 279 SWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYM 338

Query: 373 IKSGFDS--------NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           I +G           N +V++++M+MYAK GS++++ +IF  + K+D+ SWN ++MG   
Sbjct: 339 IINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGM 398

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G A E L +F ++ E    P+ +TL  VL ACN+ GFV  G L  + M+  +GV+P  E
Sbjct: 399 HGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIE 458

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C+ID+L +AG L  A +I   MP Q    +W ++L A  ++G+ +L E  A +++ L
Sbjct: 459 HYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQL 518

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y L++  Y + GR+E ++ V+K M++  + K  GCSWI +K+ ++ F  G+  
Sbjct: 519 EPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDRT 578

Query: 605 H 605
           H
Sbjct: 579 H 579


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 332/617 (53%), Gaps = 15/617 (2%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           Q +  C++ +     K++H    K      TYL N  L LYS+        ++FD     
Sbjct: 13  QFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDC 72

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S+N  +    K   ++ A ++FDE+P+PD VS+N++I+ YA  G +  A ++F +M+
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 140 LQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
              +   GFT    LS + +AC       +Q+H   + +GL  S V +GN+LI  Y K G
Sbjct: 133 EAFLDMDGFT----LSGIITACGINVGLIRQLHALSVVTGLD-SYVSVGNALITSYSKNG 187

Query: 195 VLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            L  A  +F  + E+ D +SWNS++        G  AL+ +  M   G   D +T++ V+
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDRWDY 312
            A T +++L  G Q  A  +K G+  NS V S  IDL+SKC   + D  ++F+++   D 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 313 AVINVMISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
            + N MIS Y  Y    + ALE F+ +     RP + +L CV+S+   +     G Q H 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 371 MAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +A+K    SN + V ++L+ MY+K G++  +  +F  + + + VS+N+++ G  Q+G   
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGF 427

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           ++L +F+ +LE G  P  IT  +VL AC + G V+ G + F+ MK+++G+ P   H++C+
Sbjct: 428 QSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCM 487

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLL +AG+L +A  +  T+PF PG   W ++L A  I+G+V+L    A R++ L   + 
Sbjct: 488 IDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNA 547

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
            PY +L   Y+  GR +    V+K+MR  G+ K  GCSWI +  RI+ F A +  H   +
Sbjct: 548 APYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIK 607

Query: 610 KIYLVLRLLTWEMEDEG 626
           KI   L  +  +++  G
Sbjct: 608 KIQEYLEEMMRKIKKVG 624


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 198/678 (29%), Positives = 335/678 (49%), Gaps = 81/678 (11%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           SF  A+ +H H+   GF    +  NR L++Y +        QLF+EIP  + I+    + 
Sbjct: 28  SFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLIT 87

Query: 90  GLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                 NL+   ++F+  P    D V +N+MI+GYA  G    ALE+F  M+    RP  
Sbjct: 88  AYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDD 147

Query: 148 FTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK----LGV---- 195
           FTF+ +LS     V +     Q+H +++++G+   +  + N+L+ +Y K    LG+    
Sbjct: 148 FTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSA 207

Query: 196 -------------------------------LYYAFGVFLNMEELDIISWNSLISGCFNS 224
                                          L  A  VF  M E    +WN++ISG  + 
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV--------------FA 270
           G  + AL     MR+ G   D+ T + +I+AC  + +   GKQ+              F 
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFC 327

Query: 271 LSVKVGFLS---------------------NSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           LSV    ++                     N I  +A +  +    R+E++   FE++  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQF 368
            +   + VMIS   + GFG+  L+LF+ M  +   P +F  +  L++  +   +E+G Q 
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  +  G++S+  V ++++ MYAK G ++++  +FV +   DLVSWN+++  L Q+G  
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHG 507

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            + +++F+++L+EG+ PDRIT   VL AC++ G V+KG   F++M E YG+ P E+HYA 
Sbjct: 508 VKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYAR 567

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           ++DL C+AG    A  +  +MP +PG  +WE++L    I+G++ L    AE++  L   +
Sbjct: 568 MVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQN 627

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
              Y LL+  YA  GRW  + +V+K+MR   + K   CSWI ++N+++ F   +  H   
Sbjct: 628 DGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEV 687

Query: 609 QKIYLVLRLLTWEMEDEG 626
             +Y  L  L  EM+  G
Sbjct: 688 LSVYRYLEQLGLEMKKLG 705



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 169/339 (49%), Gaps = 18/339 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNA-HTY---LGNRCLDLYSRFGTSDDVLQLFD 74
           + +I  C +  SF   K +H ++ K   N  H++   + N  + LY +    D+  ++F 
Sbjct: 293 TTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFY 352

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +P +N I+WN  L G + +  ++ A   F+E+P  ++++   MISG A  G+ D  L++
Sbjct: 353 AMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKL 412

Query: 135 FSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M+L G  P  F F+  L+  S   +  +G+Q+H  ++  G   S++ +GN++I MY 
Sbjct: 413 FKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYE-SSLSVGNAMISMYA 471

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K GV+  A  VF+ M  +D++SWNS+I+     G+G  A++ F  M   G  PD  T   
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLE------DSVRLF 304
           V+ AC+    ++KG+  F ++    G        +  +DLF +           DS+   
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 305 EQLDRWDYAVINVMISTYGRYGFG-EVALELFQLMLRED 342
                W+  +    I  +G    G E A +LF+LM + D
Sbjct: 592 PGAPVWEALLAGCRI--HGNMDLGIEAAEQLFKLMPQND 628


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 305/548 (55%), Gaps = 10/548 (1%)

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S +  L    K   L  A +VFD +P  + VSWN++I+GYA       A+E+F +MQ
Sbjct: 129 NVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQ 188

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              + P   TF+ LL+TV         +Q+HG + + G +L  VVL N+ I  Y + G  
Sbjct: 189 RVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVL-NAAITAYSQCGAF 247

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINA 255
             +  +F  ++  D+ISWNS++      G  + A+  F  M R SG  PD Y+ + V++ 
Sbjct: 248 ADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSV 307

Query: 256 CTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWD 311
           C++    D+ G+ + +L VK+G    + V +A I ++++      +ED+ + F+ L   D
Sbjct: 308 CSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKD 367

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               N M++ Y  +G    AL  F+ M  E++   EF LS  L S   +  +  G Q HS
Sbjct: 368 AVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHS 427

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + I+SGF SN  V+SSL+ MY+K G +  + + F + DK   V WN++M G  Q+G+A  
Sbjct: 428 LVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQT 487

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
             D+F E+L+  +P D +T  A+L A ++GG VD+G  + ++M+  Y +    EHYAC +
Sbjct: 488 VTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGV 547

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DL  +AGQL KA ++  +MPFQP   +W ++L A  I+G+++L  +VA  +   +     
Sbjct: 548 DLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHS 607

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  Y+ RG W     V+KVM+  G++KV G SWI +KN +++FNA +  H    +
Sbjct: 608 TYVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVHSFNADDRSHPRMDE 667

Query: 611 IYLVLRLL 618
           I+ +LR+L
Sbjct: 668 IFDMLRML 675



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/503 (26%), Positives = 232/503 (46%), Gaps = 36/503 (7%)

Query: 84  WNICLRGLLKS---DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           WN  L     S     L  A +VFDEIP PD VSWNS+++ + + G    A  +   M  
Sbjct: 29  WNQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHA 88

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G+  S F     L + ++A     G Q+    ++SGL + NV   ++L+D+Y K G L 
Sbjct: 89  RGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGL-VDNVFSASALLDVYAKCGRLS 147

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M   + +SWN+LI+G   S     A++ F  M+     PD+ T + ++    
Sbjct: 148 DARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVE 207

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
                   +Q+     K G     +VL+A I  +S+C    DS R+F+ +   D    N 
Sbjct: 208 GPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNS 267

Query: 318 MISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEH------GSQFHS 370
           M+  Y  +G  + A+  F  M+RE  ++P  ++ + V+S       EH      G   HS
Sbjct: 268 MLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCS----EHGCDDRQGRSIHS 323

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           + +K G +    V ++++ MY +      ++ + + F  L  +D VSWN+++ G + +G 
Sbjct: 324 LVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGL 383

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           +++ L  F  +  E +  D   L+A L +C+    +  G  V S + +  G    +   +
Sbjct: 384 SSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQS-GFSSNDFVSS 442

Query: 488 CIIDLLCQAGQLGKA------IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +I +  + G +G A       D  S++P       W S++   A +G  +   ++   M
Sbjct: 443 SLIFMYSKCGMVGDARKSFEEADKGSSVP-------WNSMMFGYAQHGQAQTVTDLFSEM 495

Query: 542 MDLQLP-SPLPYSLLTQAYAMRG 563
           +D ++P   + +  L  AY+  G
Sbjct: 496 LDHKVPLDHVTFVALLTAYSHGG 518



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 197/442 (44%), Gaps = 46/442 (10%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           +   + +HG + K G      + N  +  YS+ G   D  ++FD I  ++ IS       
Sbjct: 212 YSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLIS------- 264

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFT 149
                                   WNSM+  YA  G  D A+  F +M  + GV+P  ++
Sbjct: 265 ------------------------WNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYS 300

Query: 150 FSILLSTVSS-AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGV 202
           F+ ++S  S   C    G+ IH  +++ GL     V  N++I MY +     ++  A+  
Sbjct: 301 FTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVC-NAMIAMYTRFTENCMMEDAYKC 359

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F ++   D +SWNS+++G  + G    AL  F  MR    S DE+ +S  + +C+ L  L
Sbjct: 360 FDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVL 419

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+QV +L ++ GF SN  V S+ I ++SKC  + D+ + FE+ D+      N M+  Y
Sbjct: 420 RLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGY 479

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSN 380
            ++G  +   +LF  ML   +     T   +L++      V+ GS+  +SM  +      
Sbjct: 480 AQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLR 539

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
               +  +++Y + G +D + E+   +  + D + W T++     +G      DV   L 
Sbjct: 540 MEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLF 599

Query: 440 EEGLPPDRITLAAVLLACNYGG 461
              +   R     VLL+  Y G
Sbjct: 600 ---VAEPRQHSTYVLLSSMYSG 618



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 37/219 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C         + +H  + + GF+++ ++ +  + +YS+ G   D  + F+E  +
Sbjct: 407 SAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADK 466

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV----VSWNSMISGYASCGYSDYALEM 134
            + + WN  + G  +     T   +F E+ +  V    V++ ++++ Y+  G  D   E+
Sbjct: 467 GSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEI 526

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            + M+ +        + I L     AC                         +D+YG+ G
Sbjct: 527 LNSMETR--------YKIPLRMEHYACG------------------------VDLYGRAG 554

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALD 232
            L  A  +  +M  + D + W +L+  C   G  ELA D
Sbjct: 555 QLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASD 593


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 191/605 (31%), Positives = 316/605 (52%), Gaps = 37/605 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S +S +  + +HG++ K GF     +GN  +  Y                          
Sbjct: 207 SLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFY-------------------------- 240

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                LK+  +D+A KVFDE+ E DV+SWNS+I+GY S G ++  L +F +M   G+   
Sbjct: 241 -----LKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEID 295

Query: 147 GFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   + +  + +     G+ +H   +++  S  +    N+L+DMY K G L  A  VF
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFC-NTLLDMYSKCGDLDSAKVVF 354

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M    ++S+ S+I+G    G    A+  F  M   G SPD YT++ V+N C + R LD
Sbjct: 355 REMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLD 414

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           +GK+V     +     +  V +A +D+++KC  + ++  +F ++   D    N +I  Y 
Sbjct: 415 EGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYS 474

Query: 324 RYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
           +  +   AL LF L+L E    P E T++CVL +   +   + G + H   +++G+ S+ 
Sbjct: 475 KNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            VA+SL++MYAK G++  +  +F  +  +DLVSW  ++ G   +G   E + +F ++ + 
Sbjct: 535 HVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ PD I+  ++L AC++ G VD+G   F+ M+ E  + P  EHYACI+D+L + G L K
Sbjct: 595 GIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSK 654

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A      MP  P  +IW ++L    I+ DVKL E VAE++ +L+  +   Y L+   YA 
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAE 714

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             +WE + R++K + + G+ K  GCSWI IK R+  F AG+  +   +KI   LR +   
Sbjct: 715 AEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRAR 774

Query: 622 MEDEG 626
           M +EG
Sbjct: 775 MIEEG 779



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 213/447 (47%), Gaps = 37/447 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   KS    K +   +   GF   + LG++   +Y+  G   +  ++FD++  +  + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFW 163

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           NI +  L KS +                       SG         ++ +F KM   GV 
Sbjct: 164 NILMNELAKSGDF----------------------SG---------SIGLFKKMMSSGVE 192

Query: 145 PSGFTFSIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              +TFS +    S++ S   G+Q+HG +++SG    N V GNSL+  Y K   +  A  
Sbjct: 193 MDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSV-GNSLVAFYLKNHRVDSARK 251

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E D+ISWNS+I+G  ++G  E  L  F  M +SG   D  TI  V   C   R 
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRL 311

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +  G+ V    VK  F       +  +D++SKC  L+ +  +F ++          MI+ 
Sbjct: 312 ISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAG 371

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSN 380
           Y R G    A++LF+ M  E I P  +T++ VL+       ++ G + H    ++    +
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFD 431

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL- 439
             V+++LM+MYAK GS+  +  +F ++  +D++SWNT++ G ++N  A E L +F  LL 
Sbjct: 432 IFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLV 491

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKG 466
           E+   PD  T+A VL AC      DKG
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKG 518



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 156/314 (49%), Gaps = 2/314 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK++   +  +G  L +  LG+ L  MY   G L  A  VF  ++    + WN L++   
Sbjct: 113 GKEVDNFIRGNGFVLDSN-LGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELA 171

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            SG    ++  F  M  SG   D YT S V  + + LR+++ G+Q+    +K GF   + 
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNS 231

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ +  + K +R++ + ++F+++   D    N +I+ Y   G  E  L +F  ML   
Sbjct: 232 VGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG 291

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I     T+  V +       +  G   H   +K+ F       ++L++MY+K G +DS+ 
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F ++  R +VS+ +++ G  + G A E + +FEE+ EEG+ PD  T+ AVL  C    
Sbjct: 352 VVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNR 411

Query: 462 FVDKGMLVFSAMKE 475
            +D+G  V   +KE
Sbjct: 412 LLDEGKRVHEWIKE 425



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 1/226 (0%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D  T+  V+  C   ++L  GK+V       GF+ +S + S    +++ C  L+++ R+F
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVE 363
           +Q+        N++++   + G    ++ LF+ M+   +    +T SCV  S   +  V 
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H   +KSGF     V +SL+  Y K   +DS+ ++F ++ +RD++SWN+I+ G  
Sbjct: 213 GGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
            NG A + L VF ++L  G+  D  T+ +V   C     +  G  V
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAV 318



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 140/294 (47%), Gaps = 37/294 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +++ C   +  D  K +H  + +       ++ N  +D+Y++ G+  +   +F E+  
Sbjct: 401 TAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ ISW                               N++I GY+   Y++ AL +F+ +
Sbjct: 461 KDIISW-------------------------------NTVIGGYSKNCYANEALSLFNLL 489

Query: 139 QLQG-VRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            ++    P   T + +L   +++S+   G++IHG ++R+G   S+  + NSL+DMY K G
Sbjct: 490 LVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCG 548

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A  +F ++   D++SW  +I+G    G+G+ A+  F  MR +G  PDE +   ++ 
Sbjct: 549 ALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLY 608

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQL 307
           AC+    +D+G + F +      +  ++   A I D+ ++   L  + R  E +
Sbjct: 609 ACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENM 662



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 51/209 (24%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  +FD  + IHG++ + G+ +  ++ N  +D+Y++ G       LFD+I  K+ +SW
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSW 568

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
            +                               MI+GY   G+   A+ +F++M+  G+ 
Sbjct: 569 TV-------------------------------MIAGYGMHGFGKEAIALFNQMRQAGIE 597

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKL 193
           P   +F  LL   S        H  ++  G    N++               ++DM  + 
Sbjct: 598 PDEISFVSLLYACS--------HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLART 649

Query: 194 GVLYYAFGVFLNME-ELDIISWNSLISGC 221
           G L  A+    NM    D   W +L+ GC
Sbjct: 650 GNLSKAYRFIENMPIPPDATIWGALLCGC 678


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 310/582 (53%), Gaps = 40/582 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    +F+    IH H+ K G     ++GN  L LY + GT         + P+
Sbjct: 122 ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGT---------DFPE 172

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                  KVFD +   DV+SW SMISGY   G    +LE+F KM
Sbjct: 173 TR---------------------KVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKM 211

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              GV P+ FT S ++   S       G+  HG ++  G   SN V+ ++LIDM+G+   
Sbjct: 212 LAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFD-SNYVIASALIDMHGRNCA 270

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           L  A  +F  + E D I W S+IS    + + + AL  FYSM R  G  PD +T   V+ 
Sbjct: 271 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 330

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  L +GK+V A  +  GF  N +V S+ +D++ KC  + +S R+F+++   +   
Sbjct: 331 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 390

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            + ++  Y + G  +  +++F+ M + D+    +    +L +   +  V  G + H   I
Sbjct: 391 WSALLGGYCQNGDFKSVIQIFRKMEKVDL----YCFGTILRTCAGLAAVRQGKEVHCQYI 446

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           + G   + +V S+L+++YAK G I+ +  IF ++  R+L++WN+++ G  QNGR  E L 
Sbjct: 447 RKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALR 506

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F ++++EG+ PD I+   +L AC++ G VD+G   F +M ++YG+  G EHY+C++DLL
Sbjct: 507 IFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLL 566

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A  +  T  F+   S+W ++L A     + ++ E +A+R+M+L+    L Y 
Sbjct: 567 GRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYV 626

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
           LL   Y   GRW   +R++++M+  G+NK+ G SWI  KN +
Sbjct: 627 LLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 668



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 9/195 (4%)

Query: 337 LMLREDIRPTEFTLSCVL------SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L L + I P E +   VL      +   +    HG Q H+  IKSG + +  V +SL+ +
Sbjct: 103 LQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTL 162

Query: 391 YAKTGS-IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           Y K G+    + ++F  L  +D++SW +++ G  + G+   +L++F ++L  G+ P+  T
Sbjct: 163 YFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFT 222

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           L+AV+ AC+  G +  G  +F  +    G        + +ID+  +   L  A  +   +
Sbjct: 223 LSAVIKACSELGDLKLGR-IFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL 281

Query: 510 PFQPGCSIWESILRA 524
             +P    W SI+ A
Sbjct: 282 -LEPDAICWTSIISA 295



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 17  YCSQLIDR-CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           YC   I R C    +    K +H    + G      + +  +DLY++ G  +    +FD+
Sbjct: 420 YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQ 479

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYA 131
           +P +N I+WN  + G  ++   + AL++F+++     +PD +S+  ++   +  G  D  
Sbjct: 480 MPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEG 539

Query: 132 LEMFSKM 138
            E F  M
Sbjct: 540 REYFISM 546


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 310/582 (53%), Gaps = 40/582 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    +F+    IH H+ K G     ++GN  L LY + GT         + P+
Sbjct: 63  ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGT---------DFPE 113

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                  KVFD +   DV+SW SMISGY   G    +LE+F KM
Sbjct: 114 TR---------------------KVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKM 152

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              GV P+ FT S ++   S       G+  HG ++  G   SN V+ ++LIDM+G+   
Sbjct: 153 LAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFD-SNYVIASALIDMHGRNCA 211

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           L  A  +F  + E D I W S+IS    + + + AL  FYSM R  G  PD +T   V+ 
Sbjct: 212 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 271

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  L +GK+V A  +  GF  N +V S+ +D++ KC  + +S R+F+++   +   
Sbjct: 272 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 331

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            + ++  Y + G  +  +++F+ M + D+    +    +L +   +  V  G + H   I
Sbjct: 332 WSALLGGYCQNGDFKSVIQIFRKMEKVDL----YCFGTILRTCAGLAAVRQGKEVHCQYI 387

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           + G   + +V S+L+++YAK G I+ +  IF ++  R+L++WN+++ G  QNGR  E L 
Sbjct: 388 RKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALR 447

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F ++++EG+ PD I+   +L AC++ G VD+G   F +M ++YG+  G EHY+C++DLL
Sbjct: 448 IFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLL 507

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A  +  T  F+   S+W ++L A     + ++ E +A+R+M+L+    L Y 
Sbjct: 508 GRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYV 567

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
           LL   Y   GRW   +R++++M+  G+NK+ G SWI  KN +
Sbjct: 568 LLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNL 609



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 9/195 (4%)

Query: 337 LMLREDIRPTEFTLSCVL------SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L L + I P E +   VL      +   +    HG Q H+  IKSG + +  V +SL+ +
Sbjct: 44  LQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTL 103

Query: 391 YAKTGS-IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           Y K G+    + ++F  L  +D++SW +++ G  + G+   +L++F ++L  G+ P+  T
Sbjct: 104 YFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFT 163

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           L+AV+ AC+  G +  G  +F  +    G        + +ID+  +   L  A  +   +
Sbjct: 164 LSAVIKACSELGDLKLGR-IFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDEL 222

Query: 510 PFQPGCSIWESILRA 524
             +P    W SI+ A
Sbjct: 223 -LEPDAICWTSIISA 236



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 17  YCSQLIDR-CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           YC   I R C    +    K +H    + G      + +  +DLY++ G  +    +FD+
Sbjct: 361 YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQ 420

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYA 131
           +P +N I+WN  + G  ++   + AL++F+++     +PD +S+  ++   +  G  D  
Sbjct: 421 MPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEG 480

Query: 132 LEMFSKM 138
            E F  M
Sbjct: 481 REYFISM 487


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/610 (30%), Positives = 320/610 (52%), Gaps = 36/610 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++D C S       K  H  + K+GF +   +G   + +Y                    
Sbjct: 168 VLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMY-------------------- 207

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                      +K  ++D A +VFD + + DV ++N MI GYA  G  + A ++F +MQ 
Sbjct: 208 -----------VKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQ 256

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G +P+  +F  +L   ST  +   GK +H   + +GL + +V +  +LI MY   G + 
Sbjct: 257 EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL-VDDVRVATALIRMYMGCGSIE 315

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M+  D++SW  +I G   +   E A   F +M+  G  PD  T   +INAC 
Sbjct: 316 GARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACA 375

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +L   +++ +  V+ GF ++ +V +A + +++KC  ++D+ ++F+ + R D    + 
Sbjct: 376 SSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSA 435

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           MI  Y   G GE A E F LM R ++ P   T   +L++   +  ++ G + ++ AIK+ 
Sbjct: 436 MIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD 495

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S+  V ++L+ M  K GSI+ +  IF  + +RD+V+WN ++ G + +G A E LD+F+
Sbjct: 496 LVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFD 555

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            +L+E   P+ +T   VL AC+  GFV++G   FS + +  G++P  E Y C++DLL +A
Sbjct: 556 RMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRA 615

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L +A  + + MP +P  SIW ++L A  IYG++ + E  AER +  +      Y  L+
Sbjct: 616 GELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLS 675

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G WE + +V+KVM   G+ K  GC+WI ++ +++TF   +  H    +IY  L 
Sbjct: 676 HMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELA 735

Query: 617 LLTWEMEDEG 626
            L   ++ EG
Sbjct: 736 RLMTAIKREG 745



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 252/528 (47%), Gaps = 40/528 (7%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L  RC+  +     K +  H+ + G   + Y  N  + L+S                  
Sbjct: 66  KLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHS------------------ 107

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                 IC        N+  A + FD +    VV+WN++I+GYA  G+   A  +F +M 
Sbjct: 108 ------IC-------GNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMV 154

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            + + PS  TF I+L   SS      GK+ H  +I+ G  +S+  +G +L+ MY K G +
Sbjct: 155 DEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGF-VSDFRIGTALVSMYVKGGSM 213

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  + + D+ ++N +I G   SG GE A   FY M+  G+ P+  +   +++ C
Sbjct: 214 DGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGC 273

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           +    L  GK V A  +  G + +  V +A I ++  C  +E + R+F+++   D     
Sbjct: 274 STPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWT 333

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
           VMI  Y      E A  LF  M  E I+P   T   ++++      +    + HS  +++
Sbjct: 334 VMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRA 393

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF ++ +V ++L+ MYAK G+I  + ++F  + +RD+VSW+ ++    +NG   E  + F
Sbjct: 394 GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETF 453

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLC 494
             +    + PD +T   +L AC + G +D GM +++ A+K +  ++        +I++  
Sbjct: 454 HLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD--LVSHIPVGNALINMNV 511

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           + G + +A  I   M  Q     W  ++   +++G+ +   ++ +RM+
Sbjct: 512 KHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDRML 558



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 1/215 (0%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D  T   +   C  LR+   GKQV    ++ G   N   L+  I L S C  + ++ + F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VE 363
           + ++       N +I+ Y + G  + A  LF+ M+ E + P+  T   VL +   P  ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G +FH+  IK GF S+  + ++L+ MY K GS+D + ++F  L KRD+ ++N ++ G  
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           ++G   +   +F  + +EG  P+RI+  ++L  C+
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 171/535 (31%), Positives = 317/535 (59%), Gaps = 9/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVFD++PE ++V+W  MI+ +A  G +  A+++F  M+L G  P  FT+S +LS  + 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLNMEELDIIS 213
                 GKQ+H  +IR GL+L +V +G SL+DMY K    G +  +  VF  M E +++S
Sbjct: 69  LGLLALGKQLHSRVIRLGLAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALS 272
           W ++I+    SG  +    + +    SG+  P+ ++ S V+ AC  L +   G+QV++ +
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK+G  S + V ++ I ++++  R+ED+ + F+ L   +    N ++  Y +    E A 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 333 ELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  +    I  + FT + +LS +  I  +  G Q H   +K G+ SN  + ++L+ MY
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           ++ G+I+++ ++F +++ R+++SW +++ G  ++G A   L++F ++LE G  P+ IT  
Sbjct: 308 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 367

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           AVL AC++ G + +G   F++M +E+G++P  EHYAC++DLL ++G L +A++  ++MP 
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 427

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
                +W ++L A  ++G+ +L  + AE +++ +   P  Y LL+  +A  G+W+ +V++
Sbjct: 428 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 487

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +K M++  + K  GCSWI ++NR++ F+ GE  H    +IY  L  L  ++++ G
Sbjct: 488 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 542



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 203/435 (46%), Gaps = 38/435 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C         K +H  + +LG      +G   +D+Y++      V         
Sbjct: 60  SSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV--------- 110

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY-ALEMFSK 137
                              D + KVF+++PE +V+SW ++I+ YA  G  D  A+E+F K
Sbjct: 111 -------------------DDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCK 151

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M    +RP+ F+FS +L     +S    G+Q++   ++ G++  N V GNSLI MY + G
Sbjct: 152 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCV-GNSLISMYARSG 210

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A   F  + E +++S+N+++ G   +   E A   F  +  +G     +T + +++
Sbjct: 211 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 270

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
               +  + KG+Q+    +K G+ SN  + +A I ++S+C  +E + ++F +++  +   
Sbjct: 271 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 330

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMA 372
              MI+ + ++GF   ALE+F  ML    +P E T   VLS+   +  +  G + F+SM 
Sbjct: 331 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 390

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAET 431
            + G        + ++++  ++G +  + E    +    D + W T++     +G     
Sbjct: 391 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 450

Query: 432 LDVFEELLEEGLPPD 446
               E +LE+   PD
Sbjct: 451 RHAAEMILEQ--EPD 463



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 36/264 (13%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H+     S+ S ++  C +       + ++ +  KLG  +   +GN  + +Y+R G  +D
Sbjct: 156 HIRPNHFSF-SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 214

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             + FD + +KN +S+N                               +++ GYA    S
Sbjct: 215 ARKAFDILFEKNLVSYN-------------------------------AIVDGYAKNLKS 243

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
           + A  +F+++   G+  S FTF+ LLS   ++ +   G+QIHG +++ G   SN  + N+
Sbjct: 244 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNA 302

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI MY + G +  AF VF  ME+ ++ISW S+I+G    G+   AL+ F+ M  +G  P+
Sbjct: 303 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 362

Query: 246 EYTISIVINACTKLRNLDKGKQVF 269
           E T   V++AC+ +  + +G++ F
Sbjct: 363 EITYVAVLSACSHVGMISEGQKHF 386


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/618 (30%), Positives = 306/618 (49%), Gaps = 37/618 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +      +H H  K  F +   +G   LD+Y+                       
Sbjct: 268 CAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYA----------------------- 304

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K DN+  A K+F  +P+ ++ S+N+MI GYA       A ++F ++Q     
Sbjct: 305 --------KCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFS 356

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               + S  LS    +     G Q+HG  I+S LS SN+ + N+++DMYGK G L  A G
Sbjct: 357 FDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLS-SNICVANAILDMYGKCGALVEASG 415

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  ME  D +SWN++I+ C  +      L  F +M  S   PDE+T   V+ AC   R 
Sbjct: 416 LFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRA 475

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G +V    +K G      V SA +D++SKC  +E++ ++  +L+       N +IS 
Sbjct: 476 FSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISG 535

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           +      E +   F  ML   + P  FT + VL +   +  V  G Q H+  IK    S+
Sbjct: 536 FSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSD 595

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             + S+L++MY+K G++  S  +F K  KRD V+WN ++ G   +G   E L++FE +L 
Sbjct: 596 VYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLH 655

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           E + P+  T  +VL AC++ G   KG+  F  M   Y + P  EHY+C++D+L ++GQ+ 
Sbjct: 656 ENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVE 715

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A+ +   MPF+    IW ++L    I G+V++ E  A  ++ L       Y+LL+  YA
Sbjct: 716 EALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYA 775

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             G W+ + ++++ MR + + K  GCSWI +K+ ++TF   +  H   + IY +L LL  
Sbjct: 776 DAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDLLIC 835

Query: 621 EMEDEGCVYLECDKLDVE 638
           +M   GC   E D + VE
Sbjct: 836 DMRRSGCAP-EIDTIQVE 852



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 230/456 (50%), Gaps = 6/456 (1%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C + ++    K  H H+   GF    ++ N  + +Y +    +   ++F+E+PQ
Sbjct: 28  SHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQ 87

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEP-DVVSWNSMISGYASCGYSDYALEMFSK 137
           ++ +SWN  + G   +  ++ A  VF+ +P   DVVSWNS+ISGY   G    ++ +F K
Sbjct: 88  RDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLK 147

Query: 138 MQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+  GV     T ++ L   S +     G QIHG  ++ G    +VV G++L+DMY K  
Sbjct: 148 MRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDY-DVVTGSALVDMYAKCN 206

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  +  VF  + + + ISW++ I+GC  +      L  F  M+  G    + T + V  
Sbjct: 207 SLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFR 266

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +C  L     G Q+   ++K  F S+ IV +AT+D+++KC+ + D+ +LF  L   +   
Sbjct: 267 SCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQS 326

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N MI  Y R   G  A +LF  + +      E +LS  LS+   I     G Q H +AI
Sbjct: 327 YNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAI 386

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           KS   SN  VA+++++MY K G++  ++ +F +++ RD VSWN I+    QN    +TL 
Sbjct: 387 KSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLS 446

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
            F  +L   + PD  T  +VL AC        GM V
Sbjct: 447 HFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEV 482



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 160/342 (46%), Gaps = 39/342 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   ++F     +HG + K G     ++G+  +D+YS+ G  ++  ++   + ++ 
Sbjct: 466 VLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQT 525

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               N++ISG++    S+ +   FS M  
Sbjct: 526 MVSW-------------------------------NAIISGFSLQKKSEDSQRFFSHMLE 554

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P  FT++ +L T ++      GKQIH  MI+  L LS+V + ++L+DMY K G ++
Sbjct: 555 MGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLEL-LSDVYITSTLVDMYSKCGNMH 613

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  +F    + D ++WN++I G    G GE AL+ F  M +    P+  T   V+ AC+
Sbjct: 614 DSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACS 673

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI- 315
            + N  KG   F     +  L   +   S  +D+  +  ++E+++RL + +     A+I 
Sbjct: 674 HVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIW 733

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             ++S     G  EVA +    +L+ D  P + +   +LS+I
Sbjct: 734 RTLLSICKIQGNVEVAEKAASSLLKLD--PEDSSAYTLLSNI 773



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 33/243 (13%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S +   C+  R L  GK+  A  +  GF     V +  I ++ KC  LE + ++FE++
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLRE-----------------DIRPT---- 346
            + D    N M+      G  E+A  +F  M                    DI+ +    
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 347 --------EFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
                    F  + +  S+ I  +      G Q H +A++ GFD + V  S+L++MYAK 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            S++ S ++F +L  ++ +SW+  + G  QN +    L +F+E+  +G+   + T A+V 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 455 LAC 457
            +C
Sbjct: 266 RSC 268



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 104/232 (44%), Gaps = 36/232 (15%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S++ +  V   + +Y + ++D C +  +    K IH  + KL   +  Y+ +  +D+YS+
Sbjct: 550 SHMLEMGVEPDNFTYAT-VLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSK 608

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G   D L +F + P+++ ++W                               N+MI G+
Sbjct: 609 CGNMHDSLLMFRKAPKRDSVTW-------------------------------NAMICGF 637

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQ--IHGSMIRSGLSLSNV 180
           A  G  + ALE+F  M  + ++P+  TF  +L   S   + K+   +   + S  +L   
Sbjct: 638 AYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQ 697

Query: 181 VLGNS-LIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           +   S ++D+ G+ G +  A  +  +M  E D I W +L+S C   G  E+A
Sbjct: 698 LEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVA 749


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/535 (31%), Positives = 317/535 (59%), Gaps = 9/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVFD++PE ++V+W  MI+ +A  G +  A+++F  M+L G  P  FT+S +LS  + 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFLNMEELDIIS 213
                 GKQ+H  +IR GL+L +V +G SL+DMY K    G +  +  VF  M E +++S
Sbjct: 64  LGLLALGKQLHSRVIRLGLAL-DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALS 272
           W ++I+    SG  +    + +    SG+  P+ ++ S V+ AC  L +   G+QV++ +
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK+G  S + V ++ I ++++  R+ED+ + F+ L   +    N ++  Y +    E A 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 333 ELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  +    I  + FT + +LS +  I  +  G Q H   +K G+ SN  + ++L+ MY
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           ++ G+I+++ ++F +++ R+++SW +++ G  ++G A   L++F ++LE G  P+ IT  
Sbjct: 303 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 362

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           AVL AC++ G + +G   F++M +E+G++P  EHYAC++DLL ++G L +A++  ++MP 
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 422

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
                +W ++L A  ++G+ +L  + AE +++ +   P  Y LL+  +A  G+W+ +V++
Sbjct: 423 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 482

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +K M++  + K  GCSWI ++NR++ F+ GE  H    +IY  L  L  ++++ G
Sbjct: 483 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 537



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 203/435 (46%), Gaps = 38/435 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C         K +H  + +LG      +G   +D+Y++      V         
Sbjct: 55  SSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV--------- 105

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY-ALEMFSK 137
                              D + KVF+++PE +V+SW ++I+ YA  G  D  A+E+F K
Sbjct: 106 -------------------DDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCK 146

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M    +RP+ F+FS +L     +S    G+Q++   ++ G++  N V GNSLI MY + G
Sbjct: 147 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCV-GNSLISMYARSG 205

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A   F  + E +++S+N+++ G   +   E A   F  +  +G     +T + +++
Sbjct: 206 RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLS 265

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
               +  + KG+Q+    +K G+ SN  + +A I ++S+C  +E + ++F +++  +   
Sbjct: 266 GAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS 325

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMA 372
              MI+ + ++GF   ALE+F  ML    +P E T   VLS+   +  +  G + F+SM 
Sbjct: 326 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 385

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAET 431
            + G        + ++++  ++G +  + E    +    D + W T++     +G     
Sbjct: 386 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 445

Query: 432 LDVFEELLEEGLPPD 446
               E +LE+   PD
Sbjct: 446 RHAAEMILEQ--EPD 458



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 36/264 (13%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H+     S+ S ++  C +       + ++ +  KLG  +   +GN  + +Y+R G  +D
Sbjct: 151 HIRPNHFSF-SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 209

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             + FD + +KN +S+N                               +++ GYA    S
Sbjct: 210 ARKAFDILFEKNLVSYN-------------------------------AIVDGYAKNLKS 238

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
           + A  +F+++   G+  S FTF+ LLS   ++ +   G+QIHG +++ G   SN  + N+
Sbjct: 239 EEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK-SNQCICNA 297

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI MY + G +  AF VF  ME+ ++ISW S+I+G    G+   AL+ F+ M  +G  P+
Sbjct: 298 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 357

Query: 246 EYTISIVINACTKLRNLDKGKQVF 269
           E T   V++AC+ +  + +G++ F
Sbjct: 358 EITYVAVLSACSHVGMISEGQKHF 381


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 315/605 (52%), Gaps = 37/605 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S +S    + +HG + K GF     +GN  +  Y                          
Sbjct: 207 SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFY-------------------------- 240

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                LK+  +D+A KVFDE+ E DV+SWNS+I+GY S G ++  L +F +M + G+   
Sbjct: 241 -----LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295

Query: 147 GFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   + +  + +     G+ +H   +++  S  +    N+L+DMY K G L  A  VF
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKCGDLDSAKAVF 354

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M +  ++S+ S+I+G    G    A+  F  M   G SPD YT++ V+N C + R LD
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           +GK+V     +     +  V +A +D+++KC  ++++  +F ++   D    N +I  Y 
Sbjct: 415 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query: 324 RYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
           +  +   AL LF L+L E    P E T++CVL +   +   + G + H   +++G+ S+ 
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            VA+SL++MYAK G++  +  +F  +  +DLVSW  ++ G   +G   E + +F ++ + 
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+  D I+  ++L AC++ G VD+G   F+ M+ E  + P  EHYACI+D+L + G L K
Sbjct: 595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 654

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A      MP  P  +IW ++L    I+ DVKL E VAE++ +L+  +   Y L+   YA 
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             +WE + R++K + + G+ K  GCSWI IK R+  F AG+  +   + I   LR +   
Sbjct: 715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774

Query: 622 MEDEG 626
           M +EG
Sbjct: 775 MIEEG 779



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/447 (30%), Positives = 214/447 (47%), Gaps = 37/447 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   KS    K +   +   GF   + LG++   +Y+  G   +  ++FDE+  +  + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           NI +  L KS +                       SG         ++ +F KM   GV 
Sbjct: 164 NILMNELAKSGDF----------------------SG---------SIGLFKKMMSSGVE 192

Query: 145 PSGFTFSIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              +TFS +    S++ S   G+Q+HG +++SG    N V GNSL+  Y K   +  A  
Sbjct: 193 MDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSV-GNSLVAFYLKNQRVDSARK 251

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E D+ISWNS+I+G  ++G  E  L  F  M  SG   D  TI  V   C   R 
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +  G+ V ++ VK  F       +  +D++SKC  L+ +  +F ++          MI+ 
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y R G    A++LF+ M  E I P  +T++ VL+       ++ G + H    ++    +
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD 431

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V+++LM+MYAK GS+  +  +F ++  +D++SWNTI+ G ++N  A E L +F  LLE
Sbjct: 432 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE 491

Query: 441 EG-LPPDRITLAAVLLACNYGGFVDKG 466
           E    PD  T+A VL AC      DKG
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKG 518



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 156/314 (49%), Gaps = 2/314 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK++  + IR    + +  LG+ L  MY   G L  A  VF  ++    + WN L++   
Sbjct: 113 GKEVD-NFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELA 171

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            SG    ++  F  M  SG   D YT S V  + + LR++  G+Q+    +K GF   + 
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS 231

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ +  + K  R++ + ++F+++   D    N +I+ Y   G  E  L +F  ML   
Sbjct: 232 VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSG 291

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I     T+  V +       +  G   HS+ +K+ F       ++L++MY+K G +DS+ 
Sbjct: 292 IEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F ++  R +VS+ +++ G  + G A E + +FEE+ EEG+ PD  T+ AVL  C    
Sbjct: 352 AVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYR 411

Query: 462 FVDKGMLVFSAMKE 475
            +D+G  V   +KE
Sbjct: 412 LLDEGKRVHEWIKE 425



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 1/228 (0%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D  T+  V+  C   ++L  GK+V       GF+ +S + S    +++ C  L+++ R+F
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVE 363
           +++        N++++   + G    ++ LF+ M+   +    +T SCV  S   +  V 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H   +KSGF     V +SL+  Y K   +DS+ ++F ++ +RD++SWN+I+ G  
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            NG A + L VF ++L  G+  D  T+ +V   C     +  G  V S
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 144/296 (48%), Gaps = 41/296 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFK--LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + +++ C  ++  D  K +H  + +  LGF+   ++ N  +D+Y++ G+  +   +F E+
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFD--IFVSNALMDMYAKCGSMQEAELVFSEM 458

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
             K+ ISW                               N++I GY+   Y++ AL +F+
Sbjct: 459 RVKDIISW-------------------------------NTIIGGYSKNCYANEALSLFN 487

Query: 137 -KMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             ++ +   P   T + +L   +++S+   G++IHG ++R+G   S+  + NSL+DMY K
Sbjct: 488 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAK 546

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G L  A  +F ++   D++SW  +I+G    G+G+ A+  F  MR +G   DE +   +
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQL 307
           + AC+    +D+G + F +      +  ++   A I D+ ++   L  + R  E +
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 662


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 318/614 (51%), Gaps = 48/614 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC+   S   A+ +HGH+ K G  A  ++    ++ Y R G + D            
Sbjct: 84  LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARD------------ 131

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A ++FD +PE +VV+W ++++GY         LE+F +M  
Sbjct: 132 -------------------ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLE 172

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T    L+   ++C    GKQ+HG  I+ G   S   +GNSL  +Y KLG L 
Sbjct: 173 MGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAE-SITSMGNSLCSLYAKLGSLD 231

Query: 198 YAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A   F  + E ++I+W ++IS C  +    EL L  F  M   G  P+E+T++ V++ C
Sbjct: 232 SALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLC 291

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +L+ GKQV A S K+G  +N  V ++T+ L+ +    ++++RLFEQ++       N
Sbjct: 292 GTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWN 351

Query: 317 VMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            MIS Y +              G  AL +F+ + R  ++P  FT S +LS    +  +E 
Sbjct: 352 AMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQ 411

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IKSGF S+ VV S+L+ MY K G I  + + F+++  R  V+W +++ G +Q
Sbjct: 412 GEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQ 471

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G+  E + +FEE+   G+ P+ IT  ++L AC+Y G V++    F  MK+EY + P  +
Sbjct: 472 HGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVD 531

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C+ID+  + G++  A        F+P  +IW S++     +G+++L    A+++++L
Sbjct: 532 HYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLEL 591

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL   Y    RW+ + RV+K+M++  +  +   SWI IK+++Y F A +  
Sbjct: 592 KPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRT 651

Query: 605 HHGGQKIYLVLRLL 618
           H    ++Y +L  L
Sbjct: 652 HPQATELYQLLENL 665



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 38/234 (16%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K  V K  L   S ++  C +  + +  + IH    K GF +   + +  +++Y++ G  
Sbjct: 385 KRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCI 444

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
            D  + F E+P +  ++W                                SMISGY+  G
Sbjct: 445 QDANKAFLEMPTRTFVTW-------------------------------TSMISGYSQHG 473

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLG- 183
               A+++F +M+L GVRP+  TF  LLS  S A      + +  M++    +  VV   
Sbjct: 474 QPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY 533

Query: 184 NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYS 236
             +IDM+ +LG +  AF        E +   W+SL++GC + G  ELA   FY+
Sbjct: 534 GCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA---FYA 584


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 323/611 (52%), Gaps = 49/611 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C+  K    A+ IH H+ K G +   +L    +++Y++ GT               
Sbjct: 75  ILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGT--------------- 119

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           ++TA KVFDE+P  +VVSW ++++GY      + A+++F +M  
Sbjct: 120 ----------------METARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLE 163

Query: 141 QGVRPSGFTFSILLSTVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            G  P+ +T    LS  SS  H    GKQIHG  I+  +   +  +GNSL  +Y K G L
Sbjct: 164 AGAYPTNYTLGTALS-ASSDLHSKELGKQIHGYSIKYRIEF-DASIGNSLCSLYSKCGSL 221

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A   F  + + ++ISW ++IS   ++G     L  F  M      P+E+T++  ++ C
Sbjct: 222 ECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLC 281

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             +++LD G Q+ +L++K+GF SN  + ++ + L+ KC  + ++ +LF++++       N
Sbjct: 282 CVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWN 341

Query: 317 VMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEH 364
            MI+ + R           +  G  AL +F  + R  ++P  FT S VLS       +E 
Sbjct: 342 AMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQ 401

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK+GF S+ VV ++L+ MY K GSI+ +++ FV++  R L+SW +++ G  Q
Sbjct: 402 GEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQ 461

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           NG+  + L +FE++   G+ P++IT   VL AC++ G VD+ +  F  MK EY + P  +
Sbjct: 462 NGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMD 521

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC+ID+  + G+L +A D    M  +P   IW  ++      G ++L    AE++++L
Sbjct: 522 HYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNL 581

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y+LL   Y   G+W+ + RV+K+M++  + ++   SWI IK++IY+F      
Sbjct: 582 KPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARS 641

Query: 605 HHGGQKIYLVL 615
           H    ++Y +L
Sbjct: 642 HAQSGEMYELL 652


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 315/605 (52%), Gaps = 37/605 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S +S    + +HG + K GF     +GN  +  Y                          
Sbjct: 56  SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFY-------------------------- 89

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                LK+  +D+A KVFDE+ E DV+SWNS+I+GY S G ++  L +F +M + G+   
Sbjct: 90  -----LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 144

Query: 147 GFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   + +  + +     G+ +H   +++  S  +    N+L+DMY K G L  A  VF
Sbjct: 145 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKCGDLDSAKAVF 203

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M +  ++S+ S+I+G    G    A+  F  M   G SPD YT++ V+N C + R LD
Sbjct: 204 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 263

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           +GK+V     +     +  V +A +D+++KC  ++++  +F ++   D    N +I  Y 
Sbjct: 264 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 323

Query: 324 RYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
           +  +   AL LF L+L E    P E T++CVL +   +   + G + H   +++G+ S+ 
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 383

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            VA+SL++MYAK G++  +  +F  +  +DLVSW  ++ G   +G   E + +F ++ + 
Sbjct: 384 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 443

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+  D I+  ++L AC++ G VD+G   F+ M+ E  + P  EHYACI+D+L + G L K
Sbjct: 444 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 503

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A      MP  P  +IW ++L    I+ DVKL E VAE++ +L+  +   Y L+   YA 
Sbjct: 504 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 563

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             +WE + R++K + + G+ K  GCSWI IK R+  F AG+  +   + I   LR +   
Sbjct: 564 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 623

Query: 622 MEDEG 626
           M +EG
Sbjct: 624 MIEEG 628



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 190/368 (51%), Gaps = 6/368 (1%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL---LSTVSSA 160
           FDE+     + WN +++  A  G    ++ +F KM   GV    +TFS +    S++ S 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             G+Q+HG +++SG    N V GNSL+  Y K   +  A  VF  M E D+ISWNS+I+G
Sbjct: 61  HGGEQLHGFILKSGFGERNSV-GNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             ++G  E  L  F  M  SG   D  TI  V   C   R +  G+ V ++ VK  F   
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
               +  +D++SKC  L+ +  +F ++          MI+ Y R G    A++LF+ M  
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E I P  +T++ VL+       ++ G + H    ++    +  V+++LM+MYAK GS+  
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACN 458
           +  +F ++  +D++SWNTI+ G ++N  A E L +F  LLEE    PD  T+A VL AC 
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 459 YGGFVDKG 466
                DKG
Sbjct: 360 SLSAFDKG 367



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 133/263 (50%), Gaps = 1/263 (0%)

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN L++    SG    ++  F  M  SG   D YT S V  + + LR++  G+Q+    +
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K GF   + V ++ +  + K  R++ + ++F+++   D    N +I+ Y   G  E  L 
Sbjct: 72  KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  ML   I     T+  V +       +  G   HS+ +K+ F       ++L++MY+
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 191

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +DS+  +F ++  R +VS+ +++ G  + G A E + +FEE+ EEG+ PD  T+ A
Sbjct: 192 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 251

Query: 453 VLLACNYGGFVDKGMLVFSAMKE 475
           VL  C     +D+G  V   +KE
Sbjct: 252 VLNCCARYRLLDEGKRVHEWIKE 274



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 144/296 (48%), Gaps = 41/296 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFK--LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + +++ C  ++  D  K +H  + +  LGF+   ++ N  +D+Y++ G+  +   +F E+
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFD--IFVSNALMDMYAKCGSMQEAELVFSEM 307

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
             K+ ISW                               N++I GY+   Y++ AL +F+
Sbjct: 308 RVKDIISW-------------------------------NTIIGGYSKNCYANEALSLFN 336

Query: 137 -KMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             ++ +   P   T + +L   +++S+   G++IHG ++R+G   S+  + NSL+DMY K
Sbjct: 337 LLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAK 395

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G L  A  +F ++   D++SW  +I+G    G+G+ A+  F  MR +G   DE +   +
Sbjct: 396 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 455

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQL 307
           + AC+    +D+G + F +      +  ++   A I D+ ++   L  + R  E +
Sbjct: 456 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 511


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 200/692 (28%), Positives = 338/692 (48%), Gaps = 87/692 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           ++   C   K++   K ++ ++  +GF  ++ +    LD++ + G  D   + F+EI  K
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGY----SDYA 131
           +   WNI + G         ALK   ++     +PD V+WN++ISGYA  G     S Y 
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 132 LEM--------------------------------FSKMQLQGVRPSGFTFSILLSTVSS 159
           LEM                                F KM L+GV+P+    SI +++  S
Sbjct: 315 LEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPN----SITIASAVS 370

Query: 160 AC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK---LGVLYYAFGVFLNME-- 207
           AC       HG++IHG  I+     S++++GNSL+D Y K   + V    FG+    +  
Sbjct: 371 ACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLV 430

Query: 208 ------------------------------ELDIISWNSLISGCFNSGYGELALDQFYSM 237
                                         E DII+WN L++G    G G+ AL+ F  M
Sbjct: 431 SWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
              G  P+  TIS  + AC ++RNL  GK++    ++     ++ V SA I ++S C+ L
Sbjct: 491 HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSL 550

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           E +  +F +L   D  V N +IS   + G    AL+L + M   ++     T+   L + 
Sbjct: 551 EVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 610

Query: 358 -PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +  G + H   I+ G D+   + +SL++MY + GSI  S  IF  + +RDLVSWN
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 670

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++     +G   + +++F++    GL P+ IT   +L AC++ G +++G   F  MK E
Sbjct: 671 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y + P  E YAC++DLL +AGQ  + ++    MPF+P  ++W S+L A  I+ +  L E 
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 790

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            A  + +L+  S   Y L+   Y+  GRWE   +++ +M++ G+ K  GCSWI +K +++
Sbjct: 791 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           +F  G+  H   ++I   +  L +++++ G V
Sbjct: 851 SFVVGDTSHPLMEQISAKMESLYFDIKEIGYV 882



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 145/644 (22%), Positives = 277/644 (43%), Gaps = 94/644 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++ +C    +      +H  L   G +   +LG+R L++Y + G  +D  ++FD++ +
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 79  KNCISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSW------------------- 115
           +N  SW   +       + +  +K+F    +E   PD   +                   
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 116 -----------NSMISG-----YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
                      NS + G     +  CG  D A   F +++ + V    F ++I++S  +S
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV----FMWNIMVSGYTS 268

Query: 160 ACHGKQIHGSMIRSGLSLSNV----VLGNSLIDMYGKLGVLYYAFGVFLNMEEL-----D 210
               K+    +  S + LS V    V  N++I  Y + G    A   FL M  L     +
Sbjct: 269 KGEFKKALKCI--SDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SW +LI+G   +GY   AL  F  M   G  P+  TI+  ++ACT L  L  G+++  
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386

Query: 271 LSVKVGFL-SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG------ 323
             +KV  L S+ +V ++ +D ++KC  +E + R F  + + D    N M++ Y       
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446

Query: 324 -----------------------------RYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
                                        +YG G+ ALE FQ M    + P   T+S  L
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 355 SSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           ++   +  ++ G + H   +++  + +  V S+L+ MY+   S++ +  +F +L  RD+V
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            WN+I+    Q+GR+   LD+  E+    +  + +T+ + L AC+    + +G  +   +
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFI 626

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
               G+         +ID+  + G + K+  I   MP Q     W  ++    ++G    
Sbjct: 627 I-RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMD 684

Query: 534 TENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
             N+ ++   + L P+ + ++ L  A +  G  E   +  K+M+
Sbjct: 685 AVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMK 728



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 5/216 (2%)

Query: 243 SPDEYTISI---VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           +PDE  I I   ++  C KL NL  G QV A  V  G      + S  ++++ +   +ED
Sbjct: 84  NPDE-CIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
           + R+F+++   +      ++  Y   G  E  ++LF LM+ E +RP  F    V  +   
Sbjct: 143 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 202

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +     G   +   +  GF+ N+ V  S+++M+ K G +D +   F +++ +D+  WN +
Sbjct: 203 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 262

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           + G T  G   + L    ++   G+ PD++T  A++
Sbjct: 263 VSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 315/605 (52%), Gaps = 36/605 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S         +H +LFK G ++   +    LDLY + G              
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG-------------- 293

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +++TAL +F+     +VV WN M+  +        + E+F +M
Sbjct: 294 -----------------DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM 336

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+RP+ FT+  +L T +       G+QIH   +++G   S++ +   LIDMY K G 
Sbjct: 337 QAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGW 395

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  V   ++E D++SW S+I+G       + AL  F  M+  G  PD   ++  I+ 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +  + +G Q+ A     G+  +  + +A ++L+++C R+ ++   FE+++  D    
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITW 515

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
           N ++S + + G  E AL++F  M +  ++   FT    LS S  +  ++ G Q H+  IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      V ++L+ +Y K GS + +   F ++ +R+ VSWNTI+   +Q+GR  E LD+
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDL 635

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++ +EG+ P+ +T   VL AC++ G V++G+  F +M +EYG+ P  +HYAC+ID+  
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFG 695

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AGQL +A      MP      +W ++L A  ++ ++++ E  A+ +++L+      Y L
Sbjct: 696 RAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVL 755

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+ AYA+  +W    +V+K+MR  G+ K  G SWI +KN ++ F  G+  H   ++IY  
Sbjct: 756 LSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNF 815

Query: 615 LRLLT 619
           L ++ 
Sbjct: 816 LAVIN 820



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 226/433 (52%), Gaps = 36/433 (8%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           + +     IH      G   +  +GN  +DLYS+ G           +P           
Sbjct: 56  RRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLV---------LP----------- 95

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                      A +VF+E+   D VSW +M+SGYA  G  + AL ++ +M   GV P+ +
Sbjct: 96  -----------ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPY 144

Query: 149 TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
             S +LS+ + A     G+ IH    + G   S + +GN++I +Y + G    A  VF +
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +++N+LISG    G+GE AL+ F  M++SG SPD  TIS ++ AC  L +L KG
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ +   K G  S+ I+  + +DL+ KC  +E ++ +F   DR +  + N+M+  +G+ 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
                + ELF  M    IRP +FT  C+L +      ++ G Q HS+++K+GF+S+  V+
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             L++MY+K G ++ +  +   L ++D+VSW +++ G  Q+    + L  F+E+ + G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 445 PDRITLAAVLLAC 457
           PD I LA+ +  C
Sbjct: 444 PDNIGLASAISGC 456



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 218/442 (49%), Gaps = 36/442 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   + F   + IH   +K GF +  ++GN  + LY R G+             
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGS------------- 193

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VF ++P  D V++N++ISG+A CG+ ++ALE+F +M
Sbjct: 194 ------------------FRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM 235

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+ P   T S LL+  +S      G Q+H  + ++G+S S+ ++  SL+D+Y K G 
Sbjct: 236 QFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS-SDYIMEGSLLDLYVKCGD 294

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F + +  +++ WN ++           + + F  M+ +G  P+++T   ++  
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT  R +D G+Q+ +LSVK GF S+  V    ID++SK   LE + R+ E L   D    
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+ Y ++   + AL  F+ M +  I P    L+  +S    I  +  G Q H+    
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG+  +  + ++L+ +YA+ G I  +   F +++ +D ++WN ++ G  Q+G   E L V
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
           F  + + G+  +  T  + L A
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSA 556



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 2/308 (0%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           +IH   +  GL    +V GN LID+Y K G++  A  VF  +   D +SW +++SG   +
Sbjct: 63  EIHAKAVTRGLGKYRIV-GNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G GE AL  +  M  +G  P  Y +S V+++CTK     +G+ + A   K GF S   V 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A I L+ +C     + R+F  +   D    N +IS + + G GE ALE+F+ M    + 
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T+S +L++   +  ++ G+Q HS   K+G  S+ ++  SL+++Y K G ++++  I
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F   D+ ++V WN +++   Q    A++ ++F ++   G+ P++ T   +L  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 464 DKGMLVFS 471
           D G  + S
Sbjct: 362 DLGEQIHS 369


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 315/605 (52%), Gaps = 36/605 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S         +H +LFK G ++   +    LDLY + G              
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG-------------- 293

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +++TAL +F+     +VV WN M+  +        + E+F +M
Sbjct: 294 -----------------DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM 336

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+RP+ FT+  +L T +       G+QIH   +++G   S++ +   LIDMY K G 
Sbjct: 337 QAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGW 395

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  V   ++E D++SW S+I+G       + AL  F  M+  G  PD   ++  I+ 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +  + +G Q+ A     G+  +  + +A ++L+++C R+ ++   FE+++  D    
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITW 515

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
           N ++S + + G  E AL++F  M +  ++   FT    LS S  +  ++ G Q H+  IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      V ++L+ +Y K GS + +   F ++ +R+ VSWNTI+   +Q+GR  E LD+
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDL 635

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++ +EG+ P+ +T   VL AC++ G V++G+  F +M +EYG+ P  +HYAC+ID+  
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFG 695

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AGQL +A      MP      +W ++L A  ++ ++++ E  A+ +++L+      Y L
Sbjct: 696 RAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVL 755

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+ AYA+  +W    +V+K+MR  G+ K  G SWI +KN ++ F  G+  H   ++IY  
Sbjct: 756 LSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNF 815

Query: 615 LRLLT 619
           L ++ 
Sbjct: 816 LAVIN 820



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 226/433 (52%), Gaps = 36/433 (8%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           + +     IH      G   +  +GN  +DLYS+ G           +P           
Sbjct: 56  RRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLV---------LP----------- 95

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                      A +VF+E+   D VSW +M+SGYA  G  + AL ++ +M   GV P+ +
Sbjct: 96  -----------ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPY 144

Query: 149 TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
             S +LS+ + A     G+ IH    + G   S + +GN++I +Y + G    A  VF +
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +++N+LISG    G+GE AL+ F  M++SG SPD  TIS ++ AC  L +L KG
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ +   K G  S+ I+  + +DL+ KC  +E ++ +F   DR +  + N+M+  +G+ 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
                + ELF  M    IRP +FT  C+L +      ++ G Q HS+++K+GF+S+  V+
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             L++MY+K G ++ +  +   L ++D+VSW +++ G  Q+    + L  F+E+ + G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 445 PDRITLAAVLLAC 457
           PD I LA+ +  C
Sbjct: 444 PDNIGLASAISGC 456



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 218/442 (49%), Gaps = 36/442 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   + F   + IH   +K GF +  ++GN  + LY R G+             
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGS------------- 193

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VF ++P  D V++N++ISG+A CG+ ++ALE+F +M
Sbjct: 194 ------------------FRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM 235

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+ P   T S LL+  +S      G Q+H  + ++G+S S+ ++  SL+D+Y K G 
Sbjct: 236 QFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS-SDYIMEGSLLDLYVKCGD 294

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F + +  +++ WN ++           + + F  M+ +G  P+++T   ++  
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT  R +D G+Q+ +LSVK GF S+  V    ID++SK   LE + R+ E L   D    
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+ Y ++   + AL  F+ M +  I P    L+  +S    I  +  G Q H+    
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG+  +  + ++L+ +YA+ G I  +   F +++ +D ++WN ++ G  Q+G   E L V
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
           F  + + G+  +  T  + L A
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSA 556



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 2/308 (0%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           +IH   +  GL    +V GN LID+Y K G++  A  VF  +   D +SW +++SG   +
Sbjct: 63  EIHAKAVTRGLGKYRIV-GNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G GE AL  +  M  +G  P  Y +S V+++CTK     +G+ + A   K GF S   V 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A I L+ +C     + R+F  +   D    N +IS + + G GE ALE+F+ M    + 
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T+S +L++   +  ++ G+Q HS   K+G  S+ ++  SL+++Y K G ++++  I
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F   D+ ++V WN +++   Q    A++ ++F ++   G+ P++ T   +L  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 464 DKGMLVFS 471
           D G  + S
Sbjct: 362 DLGEQIHS 369


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/636 (30%), Positives = 331/636 (52%), Gaps = 39/636 (6%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           KAS      ++  C S       + IHG + K GF  + ++    +D+Y++     +   
Sbjct: 159 KASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LF               +GL              E    + V W +M++GYA  G    A
Sbjct: 219 LF---------------KGL--------------EFDRKNHVLWTAMVTGYAQNGDGYKA 249

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
           +E F  M  QGV  + +TF  +L+  SS    C G+Q+HG +++SG   SNV + ++L+D
Sbjct: 250 VEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFG-SNVYVQSALVD 308

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G L  A  +   ME+ D++SWNSL+ G    G  E AL  F +M       D+YT
Sbjct: 309 MYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYT 368

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              V+N C  + +++  K V  L +K GF +  +V +A +D+++K   ++ +  +FE++ 
Sbjct: 369 FPSVLNCCV-VGSINP-KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKML 426

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
             D      +++ Y +    E +L++F  M    + P +F ++ +LS+   +  +E G Q
Sbjct: 427 EKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQ 486

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H   IKSG   +  V +SL+ MYAK G +D +  IFV +  +D+++W  I++G  QNG+
Sbjct: 487 VHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGK 546

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
              +L  ++ ++  G  PD IT   +L AC++ G VD+G   F  M + YG+ PG EHYA
Sbjct: 547 GRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYA 606

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C+IDL  ++G+L +A  +   M  +P  ++W+S+L A  ++ +++L E  A  + +L+  
Sbjct: 607 CMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPM 666

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           + +PY +L+  Y+   +W  + +++K+M+  GI K  GCSW+ I +R+ TF + +  H  
Sbjct: 667 NAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPR 726

Query: 608 GQKIYLVLRLLTWEMEDEGCV---YLECDKLDVEGR 640
             +IY  +  +   +++ G V         +D EG+
Sbjct: 727 EAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGK 762



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 228/412 (55%), Gaps = 7/412 (1%)

Query: 51  YLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
           Y  N+ L+  S+ G  +D  +LFD++PQK+  SWN  +   +    L  A ++FD     
Sbjct: 66  YQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCK 125

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIH 167
             ++W+S+ISGY   G    A ++F  M+L+G + S FT   +L   SS      G+ IH
Sbjct: 126 SSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIH 185

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSG 225
           G ++++G    NV +   L+DMY K   +  A  +F  L  +  + + W ++++G   +G
Sbjct: 186 GFVVKNGFE-GNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
            G  A++ F  M   G   ++YT   ++ AC+ +     G+QV    VK GF SN  V S
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A +D+++KC  L+++  + E ++  D    N ++  + R+G  E AL LF+ M   +++ 
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKI 364

Query: 346 TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
            ++T   VL+   +  +   S  H + IK+GF++  +V+++L++MYAKTG +D +  +F 
Sbjct: 365 DDYTFPSVLNCCVVGSINPKS-VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFE 423

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           K+ ++D++SW +++ G  QN    E+L +F ++   G+ PD+  +A++L AC
Sbjct: 424 KMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSAC 475



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 183/399 (45%), Gaps = 45/399 (11%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           + IH +   +  S  ++   N L++   K G +  A  +F  M + D  SWN++IS   N
Sbjct: 52  RSIHTT---TAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVN 108

Query: 224 --------------------------SGYGEL-----ALDQFYSMRYSGYSPDEYTISIV 252
                                     SGY +      A D F SMR  G+   ++T+  V
Sbjct: 109 VGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSV 168

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE--QLDRW 310
           +  C+ L  +  G+ +    VK GF  N  V++  +D+++KC  + ++  LF+  + DR 
Sbjct: 169 LRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRK 228

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFH 369
           ++ +   M++ Y + G G  A+E F+ M  + +   ++T   +L++   +     G Q H
Sbjct: 229 NHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVH 288

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
              +KSGF SN  V S+L++MYAK G + ++  +   ++  D+VSWN++M+G  ++G   
Sbjct: 289 GFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEE 348

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM--LVFSAMKEEYGVMPGEEHYA 487
           E L +F+ +    +  D  T  +VL  C  G    K +  L+     E Y ++       
Sbjct: 349 EALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSN----- 403

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
            ++D+  + G +  A  +   M  +     W S++   A
Sbjct: 404 ALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYA 441


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/631 (30%), Positives = 316/631 (50%), Gaps = 47/631 (7%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + L   C +  +    K +H H  K  F +   +G   LD+Y++ G   D     
Sbjct: 281 SQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMAD----- 335

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                     A KV   +P+  + S+N++I GYA    SD   +
Sbjct: 336 --------------------------AQKVLSSMPKCSLQSYNAIIVGYAR---SDRGFQ 366

Query: 134 MFSKMQLQGVRPSGFTF-SILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNS 185
                QL  +  +G  F  I LS   +AC        G+Q+HG  ++S +S+SN+ + N+
Sbjct: 367 ALKSFQL--LLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKS-ISMSNICVANA 423

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           ++DMYGK   L  A  +F  ME  D +SWN++I+ C  +G  E  L  F SM +S   PD
Sbjct: 424 ILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPD 483

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           ++T   V+ AC   + L+ G ++    +K G   +S V +A +D++ KC  +E + ++ +
Sbjct: 484 DFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHD 543

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           + ++      N +IS +      E A + F  ML   + P  FT + VL +   +  V  
Sbjct: 544 RTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGL 603

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK    S+  + S+L++MY+K G++  S  +F K   RD V+WN ++ G   
Sbjct: 604 GKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAH 663

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   E L +FE +    + P+  T  +VL AC + G VDKG+  F  M  EYG+ P  E
Sbjct: 664 HGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSE 723

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY+C++D+L ++G++ +A+++   MPF+    IW ++L    I+G+V++ E     ++ L
Sbjct: 724 HYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQL 783

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
                    LL+  YA  G W  +  ++K+MR N + K  GCSWI +K+ ++ F  G+  
Sbjct: 784 DPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKG 843

Query: 605 HHGGQKIYLVLRLLTWEMEDEGCVYLECDKL 635
           H   ++IY  L +L  EM+  G +  +CD L
Sbjct: 844 HPRDEEIYEKLGVLIGEMQSVGYIP-DCDVL 873



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 273/540 (50%), Gaps = 8/540 (1%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C    S +  K  H  +   GF   T++ N  + +Y +    D   ++FD++  
Sbjct: 53  SHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYL 112

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +S+N  + G      +D A K F E+PE DVVSWNS+ISG+   G    ++++F +M
Sbjct: 113 RDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEM 172

Query: 139 QLQGVRPSGFTFSILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              GV     + +++L    +   C  G Q+HG +++ G    +VV G++L+ MY K   
Sbjct: 173 GRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFD-CDVVTGSALLGMYAKCKR 231

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +  VF  + E + +SW+++I+GC  +      L+ F  M+  G    +   + +  +
Sbjct: 232 LDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRS 291

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L  GK++ + ++K  F S+ IV +AT+D+++KC R+ D+ ++   + +      
Sbjct: 292 CAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSY 351

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N +I  Y R   G  AL+ FQL+L+  +   E TLS  L++   I     G Q H +A+K
Sbjct: 352 NAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVK 411

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S   SN  VA+++++MY K  ++  ++++F  +++RD VSWN I+    QNG   ETL  
Sbjct: 412 SISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAH 471

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  ++   + PD  T  +VL AC     ++ GM + + + +  G+       A ++D+ C
Sbjct: 472 FASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKS-GMGFDSFVGAALVDMYC 530

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYS 553
           + G + KA  I      +   S W +I+   ++    +       RM+++ + P    Y+
Sbjct: 531 KCGMIEKADKIHDRTEQKTMVS-WNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYA 589



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 227/451 (50%), Gaps = 39/451 (8%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           ++ASL+    ++  C + +  D    +HG + K GF+     G+  L +Y++        
Sbjct: 180 DRASLAV---VLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAK-------- 228

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                           C R       LD +L VF E+PE + VSW++MI+G      +  
Sbjct: 229 ----------------CKR-------LDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVE 265

Query: 131 ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
            LE+F +MQ  GV  S   ++ L    + +S+   GK++H   ++S    S++++G + +
Sbjct: 266 GLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFG-SDIIVGTATL 324

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G +  A  V  +M +  + S+N++I G   S  G  AL  F  +  +G   DE 
Sbjct: 325 DMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEI 384

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T+S  +NAC  +R   +G+QV  L+VK   +SN  V +A +D++ KC  L ++  LF+ +
Sbjct: 385 TLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMM 444

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
           +R D    N +I+   + G  E  L  F  M+   + P +FT   VL +      +  G 
Sbjct: 445 ERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGM 504

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H+  IKSG   ++ V ++L++MY K G I+ + +I  + +++ +VSWN I+ G +   
Sbjct: 505 EIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQ 564

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++ +    F  +LE G+ PD  T AAVL  C
Sbjct: 565 QSEDAHKFFSRMLEMGVNPDNFTYAAVLDTC 595



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 215/484 (44%), Gaps = 61/484 (12%)

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG 168
           EP     N ++  Y  C Y DYA ++F KM L+                           
Sbjct: 81  EPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLR--------------------------- 113

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
                     +VV  NS+I  Y   G +  A   F  M E D++SWNS+ISG   +G   
Sbjct: 114 ----------DVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECR 163

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            ++D F  M   G   D  ++++V+ AC  L   D G QV  L VK GF  + +  SA +
Sbjct: 164 KSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALL 223

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM------LRED 342
            +++KC RL+DS+ +F +L   ++   + MI+   +       LELF+ M      + + 
Sbjct: 224 GMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQS 283

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           I  + F     LS++ +     G + HS A+KS F S+ +V ++ ++MYAK G +  + +
Sbjct: 284 IYASLFRSCAALSALRL-----GKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQK 338

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC----- 457
           +   + K  L S+N I++G  ++ R  + L  F+ LL+ GL  D ITL+  L AC     
Sbjct: 339 VLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRG 398

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           +  G    G+ V S       V         I+D+  +   L +A D+   M  +   S 
Sbjct: 399 DLEGRQVHGLAVKSISMSNICVANA------ILDMYGKCKALAEASDLFDMMERRDAVS- 451

Query: 518 WESILRASAIYGDVKLT-ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           W +I+ A    G+ + T  + A  +     P    Y  + +A A R      + +   + 
Sbjct: 452 WNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRII 511

Query: 577 KNGI 580
           K+G+
Sbjct: 512 KSGM 515



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 52/233 (22%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN  + +Y + ++D C +  +    K IH  + K    +  Y+ +  +D+YS+ G   D 
Sbjct: 581 VNPDNFTY-AAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDS 639

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
             +F++ P ++ ++W                               N+M+ GYA  G  +
Sbjct: 640 QLMFEKAPNRDFVTW-------------------------------NAMLCGYAHHGLGE 668

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG------ 183
            AL++F  MQL  V+P+  TF  +L   +        H  ++  GL   +V+L       
Sbjct: 669 EALKLFESMQLVNVKPNHATFVSVLRACA--------HMGLVDKGLHYFDVMLSEYGLDP 720

Query: 184 -----NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
                + ++D+ G+ G +  A  +   M  E D + W +L+S C   G  E+A
Sbjct: 721 QSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVA 773


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 173/550 (31%), Positives = 303/550 (55%), Gaps = 5/550 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A K+FD +PE D+VSWN++I+G++  G++  ALE+  +MQ +G RP   T   
Sbjct: 194 KCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVT 253

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   +       GK IHG  IR+G +   V +  +L DMY K G +  A  +F  M++ 
Sbjct: 254 VLPAAADVGLLMVGKSIHGYAIRAGFA-KLVNISTALADMYSKCGSVETARLIFDGMDQK 312

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            ++SWNS++ G   +G  E A+  F  M   G  P   TI   ++AC  L +L++GK V 
Sbjct: 313 TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVH 372

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
               ++   S+  V+++ I ++SKC R++ +  +F  L+   +   N MI  Y + G   
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL  F  M    ++P  FT+  V+ ++  +    H    H + I+S  D N  V ++L+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G+I  + ++F  +  R +++WN ++ G   +G     LD+F+++ +  + P+ I
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDI 552

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +V+ AC++ G VD+G+  F +MK++YG+ P  +HY  ++DLL +AG++ +A D    
Sbjct: 553 TYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIEN 612

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP  PG +++ ++L A  I+ ++++ E  A+++ +L       + LL   YA   +W  +
Sbjct: 613 MPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKV 672

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             V+K M K G+ K  GCS + ++N +++F +G   H   ++IY  L  L +E++  G V
Sbjct: 673 AEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV 732

Query: 629 YLECDKLDVE 638
                 LDVE
Sbjct: 733 PDTNLILDVE 742



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 193/368 (52%), Gaps = 5/368 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ I +     +++M+ GYA     + AL    +M+   V+P  + F+ 
Sbjct: 93  KYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTY 152

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL           GK+IHG +I +  + +NV     +++MY K   +  A+ +F  M E 
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFA-ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER 211

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SWN++I+G   +G+ + AL+    M+  G  PD  T+  V+ A   +  L  GK + 
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIH 271

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             +++ GF     + +A  D++SKC  +E +  +F+ +D+      N M+  Y + G  E
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+ +F+ ML E I PT  T+   L +   +  +E G   H    +    S+  V +SL+
Sbjct: 332 KAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLI 391

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MY+K   +D +++IF  L+ R  VSWN +++G  QNGR +E L+ F E+   G+ PD  
Sbjct: 392 SMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 449 TLAAVLLA 456
           T+ +V+ A
Sbjct: 452 TMVSVIPA 459



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 175/321 (54%), Gaps = 4/321 (1%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-L 209
           ++LL   +S     QI   +I++GL  +  +    L+ ++ K G +  A  VF  +++ L
Sbjct: 53  AVLLELCTSMKELHQIIPLVIKNGL-YNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D + +++++ G   +   E AL     MRY    P  Y  + ++  C    +L +GK++ 
Sbjct: 112 DAL-YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +   F +N   ++  +++++KC +++D+ ++F+++   D    N +I+ + + GF +
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAK 230

Query: 330 VALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            ALEL   M  E  RP   TL  VL ++  +  +  G   H  AI++GF     ++++L 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K GS++++  IF  +D++ +VSWN++M G  QNG   + + VFE++LEEG+ P  +
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 449 TLAAVLLACNYGGFVDKGMLV 469
           T+   L AC   G +++G  V
Sbjct: 351 TIMEALHACADLGDLERGKFV 371



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 204/495 (41%), Gaps = 76/495 (15%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K+IHG+  + GF     +     D+YS+ G+ +    +FD + QK  +SWN        
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWN-------- 318

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                  SM+ GY   G  + A+ +F KM  +G+ P+G T    
Sbjct: 319 -----------------------SMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEA 355

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   +       GK +H  + +  L  S++ + NSLI MY K   +  A  +F N+    
Sbjct: 356 LHACADLGDLERGKFVHKFVDQLNLG-SDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +SWN++I G   +G    AL+ F  M+  G  PD +T+  VI A  +L      K +  
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L ++     N  V +A +D++SKC  +  + +LF+ +        N MI  YG +G G  
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           AL+LF  M +  + P + T   V+S+            HS  +  G         S+ + 
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACS----------HSGLVDEGLRH----FKSMKQD 580

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y    S+D                +  ++  L + GR  E  D  E +    + P     
Sbjct: 581 YGLEPSMD---------------HYGAMVDLLGRAGRIKEAWDFIENM---PISPGITVY 622

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII-DLLCQAGQLGKAIDITSTM 509
            A+L AC     ++ G     A K+ + + P E  Y  ++ ++     +  K  ++  TM
Sbjct: 623 GAMLGACKIHKNIEVGE---KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 510 PFQ-----PGCSIWE 519
             +     PGCS+ E
Sbjct: 680 EKKGLKKTPGCSVVE 694



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           + +  C      +  K +H  + +L   +   + N  + +YS+    D    +F+ +  +
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
             +SWN                                 I GYA  G    AL  FS+M+
Sbjct: 414 THVSWNAM-------------------------------ILGYAQNGRVSEALNCFSEMK 442

Query: 140 LQGVRPSGFTF-SIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G++P  FT  S++  L+ +S   H K IHG +IRS L   N+ +  +L+DMY K G +
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD-KNIFVTTALVDMYSKCGAI 501

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
           + A  +F  + +  +I+WN++I G    G G  ALD F  M+     P++ T   VI+AC
Sbjct: 502 HMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +D+G + F ++    G   +     A +DL  +  R++++    E +
Sbjct: 562 SHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENM 613


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/614 (32%), Positives = 318/614 (51%), Gaps = 33/614 (5%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C   I  C S +S    + IHG + K G +   YL +  +++Y + G+  +   +F+ I 
Sbjct: 214 CVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSIL 273

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            K+ +  N                           V WN MISGY S G    AL +F K
Sbjct: 274 DKDSVRRN--------------------------AVIWNVMISGYVSNGCFSQALLLFIK 307

Query: 138 MQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M + G++P   T   L S  S +     GKQIHG + + GL  +N+ +  +L+DMY K G
Sbjct: 308 MMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLK-NNIRVETALLDMYLKCG 366

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +     +F   +  ++I W+++IS C  SG    AL+ FY  +      D   +  V+ 
Sbjct: 367 DMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLR 426

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+ L    +G Q+  L+ K+GF+S+  V SA +DL++KC  +  S ++F +L + D   
Sbjct: 427 ACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVS 486

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N +IS Y +    + AL+ F+ M  E+IRP   T++C+LS    +  +    + H   I
Sbjct: 487 WNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLI 546

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           + G  S  +V++SL+  YAK G I+SS   F K+ +R+ VSWN+I++G+  + R  E + 
Sbjct: 547 RQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIV 606

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F++++  G+ PD +T  A+L AC++ G VD+G   F +M E++ + P  E Y C++DLL
Sbjct: 607 LFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLL 666

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A D+   MP  P   IW S+L +   +GD  L E VA  +  L +PS + Y 
Sbjct: 667 GRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKL-VPSSVGYR 725

Query: 554 -LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL   Y   G+     +V+  ++  G+ K  GCSWI + N  + F AG+  H    +IY
Sbjct: 726 VLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIY 785

Query: 613 LVLRLLTWEMEDEG 626
             +  LT E++  G
Sbjct: 786 AAVESLTTEIKRAG 799



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 220/437 (50%), Gaps = 44/437 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + IHGH+ KLG      + N  L +Y + G  +D +Q+F+++P+ + +SWN  + G  K
Sbjct: 128 GRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQK 187

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS--GFTFS 151
           S +   +L  F            SM+  +                   G+ P+      S
Sbjct: 188 SMDYTRSLMFF-----------RSMVWEF-------------------GIYPNRVACVSS 217

Query: 152 IL-LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           IL  S++ S  HG++IHG +++SGL +   ++ +SLI+MY K G +  A  +F ++ + D
Sbjct: 218 ILSCSSLQSLTHGREIHGVVVKSGLDVEEYLV-SSLIEMYMKCGSIKNAENIFNSILDKD 276

Query: 211 IIS-----WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            +      WN +ISG  ++G    AL  F  M   G  PD  T+  + + C++  ++  G
Sbjct: 277 SVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFG 336

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           KQ+  L  K G  +N  V +A +D++ KC  +   +++F +    +  + + +IS   + 
Sbjct: 337 KQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQS 396

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVL---SSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
           G    ALELF     ED       L  VL   SS+ + P   G Q H +A K GF S+  
Sbjct: 397 GCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKP--EGMQIHGLATKMGFVSDVF 454

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V S+L+++YAK   +  S ++F++L ++DLVSWN ++ G  Q+  A E L  F ++  E 
Sbjct: 455 VGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEE 514

Query: 443 LPPDRITLAAVLLACNY 459
           + P+ +T+A +L  C +
Sbjct: 515 IRPNTVTIACILSVCAH 531



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 220/451 (48%), Gaps = 19/451 (4%)

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSILLSTVSSAC---HGKQIHGSMI 171
           N++I  Y   G+ D A+ ++ KM   GV+   F  F  L+      C    G+QIHG ++
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
           + G+ L +V + NSL+ MY K GV+  A  +F  M E+D++SWN++ISG   S     +L
Sbjct: 137 KLGV-LDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSL 195

Query: 232 DQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
             F SM +  G  P+       I +C+ L++L  G+++  + VK G      ++S+ I++
Sbjct: 196 MFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEM 255

Query: 291 FSKCNRLEDSVRLFEQ-LD----RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           + KC  ++++  +F   LD    R +  + NVMIS Y   G    AL LF  M+   I+P
Sbjct: 256 YMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKP 315

Query: 346 TEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
              T+  + S       +  G Q H +  K G  +N  V ++L++MY K G + +  +IF
Sbjct: 316 DYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIF 375

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFV 463
            +    +L+ W+ ++    Q+G   + L++F E  +E+GL  D   L AVL AC+     
Sbjct: 376 RRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGL-ADSGILVAVLRACSSLTLK 434

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
            +GM +   +  + G +      + ++DL  +   +G +  +   +  Q     W +++ 
Sbjct: 435 PEGMQI-HGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS-QKDLVSWNALIS 492

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
               Y   +  +   +   D+QL    P ++
Sbjct: 493 G---YAQDECADEALKAFRDMQLEEIRPNTV 520



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 42/345 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
            S CS+ +D         F K IHG +FK G   +  +    LD+Y              
Sbjct: 324 FSLCSESLD-------IAFGKQIHGLIFKFGLKNNIRVETALLDMY-------------- 362

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                            LK  ++ T LK+F      +++ W+++IS  A  G    ALE+
Sbjct: 363 -----------------LKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALEL 405

Query: 135 FSKMQLQ-GVRPSGFTFSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F + +++ G+  SG   ++L   S+++    G QIHG   + G  +S+V +G++L+D+Y 
Sbjct: 406 FYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGF-VSDVFVGSALVDLYA 464

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   + Y+  VFL + + D++SWN+LISG       + AL  F  M+     P+  TI+ 
Sbjct: 465 KCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIAC 524

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           +++ C  L  +   K+V    ++ G  S  +V ++ I  ++KC  +  S+  FE++   +
Sbjct: 525 ILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERN 584

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
               N +I   G +   +  + LF  M+   I+P   T + +LS+
Sbjct: 585 DVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSA 629


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/607 (29%), Positives = 326/607 (53%), Gaps = 36/607 (5%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWN 85
           +S +  + A ++H  ++KLG  ++ ++G   +D Y+  G+                    
Sbjct: 52  VSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGS-------------------- 91

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
                      +++A + FD I   D+VSW  M++ YA       +L++F++M++ G  P
Sbjct: 92  -----------VNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNP 140

Query: 146 SGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           + FTF+ +L     + +   GK +HG ++++   + ++ +G  L+D+Y K G       V
Sbjct: 141 NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM-DLYVGVGLLDLYTKFGDANDVLRV 199

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M + D+I W+ +IS    S     A++ F  MR +   P+++T + V+ +C  + NL
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             GKQV    +KVG   N  V +A +D+++KC RL++S++LF +L   +    N MI  Y
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G G+ AL L++ ML   ++ +E T S VL +   +  +E G+Q HS+++K+ +D + 
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           VV ++L++MYAK GSI ++  +F  L +RD +SWN ++ G + +G   E L  F+ + E 
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
              P+++T  ++L AC+  G +D G   F +M ++YG+ P  EHY C++ LL ++G L K
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A+ +   +P +P   +W ++L A  I+ DV L    A++++ +       + LL+  YA 
Sbjct: 500 AVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYAR 559

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             RW ++  V+K M+  G+ K  G SWI  +  ++ F+ G+  H   + I  +L  L  +
Sbjct: 560 TRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMK 619

Query: 622 MEDEGCV 628
            E  G V
Sbjct: 620 TEKAGYV 626



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 234/465 (50%), Gaps = 14/465 (3%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI---LLSTVSSACHG 163
           +P+ + VS+ ++I GY      D  +++FS++  +G   + F F+    LL +V  A   
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
             +H  + + G   SN  +G +LID Y   G +  A   F  +   D++SW  +++    
Sbjct: 61  YSLHACIYKLGHE-SNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +   + +L  F  MR  G++P+ +T + V+ AC  L     GK V    +K  +  +  V
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
               +DL++K     D +R+FE++ + D    + MIS Y +      A+ELF  M R  +
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P +FT + VL S   I  ++ G Q H   +K G D N  V+++LM++YAK G +D+S +
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F++L  R+ V+WNT+++G  Q+G   + L +++ +LE  +    +T ++VL AC     
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 463 VDKGMLVFS-AMKEEY--GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
           ++ G  + S ++K  Y   V+ G      +ID+  + G +  A  +   +  +   S W 
Sbjct: 360 MELGTQIHSLSLKTIYDKDVVVGN----ALIDMYAKCGSIKNARLVFDMLSERDEIS-WN 414

Query: 520 SILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMRG 563
           +++   +++G V       + M + + +P+ L +  +  A +  G
Sbjct: 415 AMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAG 459



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 197/389 (50%), Gaps = 37/389 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C+  ++F   K++HG + K  +    Y+G   LDLY++FG ++DVL++F+E+P+ +
Sbjct: 148 VLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHD 207

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I W+                                MIS YA    S  A+E+F +M+ 
Sbjct: 208 VIPWSF-------------------------------MISRYAQSNQSREAVELFGQMRR 236

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V P+ FTF+ +L + +S  +   GKQ+H  +++ GL   NV + N+L+D+Y K G L 
Sbjct: 237 AFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD-GNVFVSNALMDVYAKCGRLD 295

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  +F+ +   + ++WN++I G   SG G+ AL  + +M        E T S V+ AC 
Sbjct: 296 NSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACA 355

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  ++ G Q+ +LS+K  +  + +V +A ID+++KC  ++++  +F+ L   D    N 
Sbjct: 356 SLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNA 415

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAIKS 375
           MIS Y  +G    AL+ FQ+M   +  P + T   +LS+     +    Q  F SM    
Sbjct: 416 MISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDY 475

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
           G +      + ++ +  ++G +D + ++ 
Sbjct: 476 GIEPCMEHYTCMVWLLGRSGHLDKAVKLI 504



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 39/308 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V     ++ S ++  C S ++    K +H H+ K+G + + ++ N  +D+Y++ G
Sbjct: 234 MRRAFVLPNQFTFAS-VLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCG 292

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV----VSWNSMIS 120
             D+ ++LF E+P +N ++WN  + G ++S + D AL ++  + E  V    V+++S++ 
Sbjct: 293 RLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLR 352

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNV 180
             AS           + M+L                      G QIH   +++ +   +V
Sbjct: 353 ACAS----------LAAMEL----------------------GTQIHSLSLKT-IYDKDV 379

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
           V+GN+LIDMY K G +  A  VF  + E D ISWN++ISG    G    AL  F  M+ +
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLED 299
              P++ T   +++AC+    LD G+  F   V+  G        +  + L  +   L+ 
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 300 SVRLFEQL 307
           +V+L E++
Sbjct: 500 AVKLIEEI 507


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/617 (30%), Positives = 328/617 (53%), Gaps = 38/617 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C     F  A+ +H H+ K  F A     N  + +Y++F    D            
Sbjct: 205 IVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMAD------------ 252

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A+ VF  I   D++SW SMI+G++  GY   AL  F +M  
Sbjct: 253 -------------------AINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLS 293

Query: 141 QGV-RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           Q V +P+ F F    S  S       G+QIHG  I+ GL  S++  G SL DMY K G L
Sbjct: 294 QSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLG-SDLFAGCSLCDMYAKCGFL 352

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF ++E+ D+++WN++I+G  +    + +   F  MR++G  P++ T+  ++ AC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
           ++   L+ G QV +  VK+GF  +  V ++ + ++SKC+ L D++++FE + ++ D    
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSW 472

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIK 374
           N +++   +       L L +LM    I+P   TL+ VL SS  I   E GSQ H   +K
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG + +  V+++L+ MY K GS++ + ++F  +   D++SW+++++G  Q G   E  ++
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFEL 592

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +   G+ P+ IT   +L AC++ G V++G+ ++  M+E+Y + P +EH +C++DLL 
Sbjct: 593 FRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLA 652

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L  A D    MPF P   +W+++L A  ++G++++ +  AE ++ +   +     +
Sbjct: 653 RAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVM 712

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   +A  G W+   R++  MR+  + KV G SWI IK++++ F A +  H    KIY +
Sbjct: 713 LCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTM 772

Query: 615 LRLLTWEMEDEGCVYLE 631
           L  L  ++ D+GC  L+
Sbjct: 773 LEELMLQILDDGCDPLQ 789



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 182/345 (52%), Gaps = 6/345 (1%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSI-LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           A ++F K     ++   +T  I   S++ S  HG++IH  M+       +++L N ++ M
Sbjct: 84  AFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQ-PDMILQNHILSM 142

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           YGK G L  A  +F +M   +++SW S+ISG    G  + A+  +  M  SG+ PD +T 
Sbjct: 143 YGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTF 202

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             ++ +C+ L +    +Q+ A  +K  F ++ I  +A I +++K +++ D++ +F ++  
Sbjct: 203 GSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIII 262

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSIP--IPPVEHGS 366
            D      MI+ + + G+   AL  F+ ML + + +P EF      S+    + P + G 
Sbjct: 263 KDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP-DCGR 321

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H + IK G  S+     SL +MYAK G ++S+  +F  ++K DLV+WN I+ G     
Sbjct: 322 QIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVS 381

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            A E+   F ++   GL P+ +T+ ++L AC+    ++ G+ V S
Sbjct: 382 NAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHS 426


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 181/538 (33%), Positives = 292/538 (54%), Gaps = 15/538 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  +F+EIPE DVV+W +MI G+ SC +   A  MFS+M    V+P+ FT    +S+V  
Sbjct: 62  ACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFT----MSSVLK 117

Query: 160 ACHGKQI-------HGSMIRSGLSLSNVVLGNSLIDMYG-KLGVLYYAFGVFLNMEELDI 211
           AC G +        H    + G+  S V + N+L+DMY      +  A  VF ++     
Sbjct: 118 ACKGMKALSCGALAHSLATKHGIDRS-VYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW +LI+G  + G G   L  F  M      P+ ++ SI   AC  + +   GKQ+ A 
Sbjct: 177 VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAA 236

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             K G   ++ V+++ +D++ +CN L D+ R F +L   +    N +I+ Y R    E +
Sbjct: 237 VTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSE-S 295

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L LF  M  E  +P  FT + + ++   +  +  G Q H   ++ GFD N  + +SL++M
Sbjct: 296 LSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDM 355

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK GSI  S ++F  +  RDLVSW T+M+G   +G   E + +F+E+++ G+ PDRI  
Sbjct: 356 YAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVF 415

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             VL  C++ G VDKG+  F +M E+Y + P +E Y C++DLL +AG++ +A  +   MP
Sbjct: 416 MGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
           F+P  S+W ++L A   Y    L    A+R++D +      Y LL++ YA  G+W    +
Sbjct: 476 FEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAK 535

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           ++K+M+     K  G SWI I+N +Y+F  G       + ++ V+ +L W M+D+G V
Sbjct: 536 MRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDDGDV 593



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 67/442 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K+       H    K G +   Y+ N  LD+Y+                 
Sbjct: 113 SSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYA----------------- 155

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +C +             +D AL VF++IP    VSW ++I+G+   G     L  F +M
Sbjct: 156 ASCAT-------------MDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQM 202

Query: 139 QLQGVRPSGFTFSI---LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L+ V P+ F+FSI     +++SS   GKQIH ++ + GL     V+ NS++DMY +   
Sbjct: 203 LLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVM-NSILDMYCRCNY 261

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  + E ++I+WN+LI+G   S   E +L  F+ M   GY P+ +T + +  A
Sbjct: 262 LCDAKRCFGELTEKNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTFTSITAA 320

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L  G+QV    V+ GF  N  ++++ ID+++KC  + DS +LF  +   D    
Sbjct: 321 CANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSW 380

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
             M+  YG +G+G+ A++LF  M++  I+P       VL              H+  +  
Sbjct: 381 TTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCS----------HAGLVDK 430

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G         S++E Y    +I+   EI+             ++  L + GR  E   + 
Sbjct: 431 GLK----YFRSMLEDY----NINPDQEIY-----------RCVVDLLGRAGRVEEAFQLV 471

Query: 436 EELLEEGLPPDRITLAAVLLAC 457
           E +  E   PD     A+L AC
Sbjct: 472 ENMPFE---PDESVWGALLGAC 490



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 14/299 (4%)

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
           V   +LI  Y   G+   A  +F  + E D+++W ++I G  +  +   A   F  M  S
Sbjct: 44  VWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRS 103

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF-SKCNRLED 299
              P+ +T+S V+ AC  ++ L  G    +L+ K G   +  V +A +D++ + C  ++D
Sbjct: 104 EVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDD 163

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
           ++ +F  +          +I+ +   G G   L  F+ ML ED+ P  F+ S    +   
Sbjct: 164 ALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACAS 223

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           I     G Q H+   K G   +A V +S+++MY +   +  +   F +L +++L++WNT+
Sbjct: 224 ISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTL 283

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN-----------YGGFVDKG 466
           + G  +   ++E+L +F ++  EG  P+  T  ++  AC            +GG V +G
Sbjct: 284 IAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRG 341



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 96/204 (47%), Gaps = 6/204 (2%)

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           +V A++L++ Y   G    +  +F ++ +RD+V+W  +++G T      +   +F E+L 
Sbjct: 43  SVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR 102

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA-GQL 499
             + P+  T+++VL AC     +  G L  S +  ++G+         ++D+   +   +
Sbjct: 103 SEVQPNAFTMSSVLKACKGMKALSCGALAHS-LATKHGIDRSVYVQNALLDMYAASCATM 161

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLLTQ 557
             A+ + + +P +   S W +++      GD   +  +A R M L+   P+   +S+  +
Sbjct: 162 DDALSVFNDIPLKTAVS-WTTLIAGFTHRGD-GYSGLLAFRQMLLEDVGPNSFSFSIAAR 219

Query: 558 AYAMRGRWEAIVRVKKVMRKNGIN 581
           A A    +    ++   + K G++
Sbjct: 220 ACASISSYSCGKQIHAAVTKYGLH 243


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 195/675 (28%), Positives = 335/675 (49%), Gaps = 75/675 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF--------------- 63
           S ++  C   K F   + IH  ++K  F + T++GN  + LY  F               
Sbjct: 148 SSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 64  ----------------GTSDDVLQLFDEIP----QKNCI--------------------- 82
                           G  +  LQ+FDE+     + +C+                     
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 83  ---------SWNICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                    S++    G L     K  +++TA  +F+     +VV WN M+  Y      
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
             + E+F +MQ  G+ P+ FT+  +L T +       G+QIH   I++G   S++ +   
Sbjct: 328 AKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE-SDMYVSGV 386

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K   L  A  +   +E+ D++SW S+I+G     + E AL  F  M+  G  PD
Sbjct: 387 LIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPD 446

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
              ++   +AC  ++ + +G Q+ A     G+ ++  + +  ++L+++C R E++  LF 
Sbjct: 447 NIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFR 506

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           ++D  D    N +IS +G+    E AL +F  M +   +   FT    +S++  +  ++ 
Sbjct: 507 EIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQ 566

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H  A+K+G  S   VA++L+ +Y K GSI+ +  IF ++  R+ VSWNTI+   +Q
Sbjct: 567 GKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQ 626

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +GR  E LD+F+++ +EGL P+ +T   VL AC++ G V++G+  F +M   YG+ P  +
Sbjct: 627 HGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPD 686

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC++D+L +AGQL +A      MP      IW ++L A  ++ ++++ E  A+ +++L
Sbjct: 687 HYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLEL 746

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+ AYA+ G+W    +V+K+M+  GI K  G SWI +KN ++ F  G+  
Sbjct: 747 EPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRL 806

Query: 605 HHGGQKIYLVLRLLT 619
           H    +IY  L  L 
Sbjct: 807 HPLSDQIYKFLSELN 821



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/425 (31%), Positives = 213/425 (50%), Gaps = 36/425 (8%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH      G  A   +GN  +DLY+                 KN + W            
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYA-----------------KNGLVWQ----------- 96

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              A +VF E+   D VSW +M+SGYA  G    A  ++S+M    V P+ +  S +LS 
Sbjct: 97  ---ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSA 153

Query: 157 VSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +       G+ IH  + +     S   +GN+LI +Y   G    A  VF +M   D ++
Sbjct: 154 CTKGKLFAQGRMIHAQVYKQAFC-SETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVT 212

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N+LISG    G+GE AL  F  M+ SG  PD  T++ ++ AC  + +L KGKQ+ +  +
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G   + I   + +DL+ KC  +E +  +F   DR +  + N+M+  YG+      + E
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M    I P +FT  C+L +      +E G Q HS++IK+GF+S+  V+  L++MY+
Sbjct: 333 IFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYS 392

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   +D + +I   L+KRD+VSW +++ G  Q+    E L  F+E+ + G+ PD I LA+
Sbjct: 393 KYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLAS 452

Query: 453 VLLAC 457
              AC
Sbjct: 453 AASAC 457



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 171/327 (52%), Gaps = 10/327 (3%)

Query: 154 LSTVSSACHGK--------QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           L+    AC G+        +IH + +  GL  ++ ++GN LID+Y K G+++ A  VF  
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLG-ADRLIGNLLIDLYAKNGLVWQARQVFKE 103

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           +   D +SW +++SG    G G+ A   +  M ++   P  Y +S V++ACTK +   +G
Sbjct: 104 LSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           + + A   K  F S + V +A I L+      + + R+F  +   D    N +IS + + 
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC 223

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G GE AL++F  M    +RP   T++ +L++   +  ++ G Q HS  +K+G   + +  
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE 283

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
            SL+++Y K G I+++ +IF   D+ ++V WN +++   Q    A++ ++F ++   G+ 
Sbjct: 284 GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS 471
           P++ T   +L  C   G ++ G  + S
Sbjct: 344 PNKFTYPCILRTCTCTGQIELGEQIHS 370



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 59/110 (53%)

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H+ ++  G  ++ ++ + L+++YAK G +  + ++F +L  RD VSW  ++ G  Q G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
              E   ++ ++    + P    L++VL AC  G    +G ++ + + ++
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQ 173


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 200/617 (32%), Positives = 331/617 (53%), Gaps = 15/617 (2%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           Q +  C++ +     K++H    K      TYL N  L LYS+        ++FD     
Sbjct: 13  QFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDC 72

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S+N  +    K   ++ A ++FDE+P+PD VS+N++I+ YA  G +  A ++F +M+
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 140 LQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
              +   GFT    LS + +AC       +Q+H   + +GL  S V +GN+LI  Y K G
Sbjct: 133 EAFLDMDGFT----LSGIITACGINVGLIRQLHALSVVTGLD-SYVSVGNALITSYSKNG 187

Query: 195 VLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            L  A  +F  + E+ D +SWNS++        G  AL+ +  M   G   D +T++ V+
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDRWDY 312
            A T +++L  G Q  A  +K G+  NS V S  IDL+SKC   + D  ++F+++   D 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 313 AVINVMISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
            + N MIS Y  Y    + ALE F+ +     RP + +L CV+S+   +     G Q H 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 371 MAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +A+K    SN + V ++L+ MY+K G++  +  +F  + + + VS+N+++ G  Q+G   
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGF 427

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           ++L +F+ +LE    P  IT  +VL AC + G V+ G + F+ MK+++G+ P   H++C+
Sbjct: 428 QSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCM 487

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLL +AG+L +A  +  T+PF PG   W ++L A  I+G+V+L    A R++ L   + 
Sbjct: 488 IDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNA 547

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
            PY +L   Y+  GR +    V+K+MR  G+ K  GCSWI +  RI+ F A +  H   +
Sbjct: 548 APYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIK 607

Query: 610 KIYLVLRLLTWEMEDEG 626
           KI   L  +  +++  G
Sbjct: 608 KIQEYLEEMMRKIKKVG 624


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 180/536 (33%), Positives = 291/536 (54%), Gaps = 15/536 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  +F+EIPE DVV+W +MI G+ SC +   A  MFS+M    V+P+ FT    +S+V  
Sbjct: 62  ACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFT----MSSVLK 117

Query: 160 ACHGKQI-------HGSMIRSGLSLSNVVLGNSLIDMYG-KLGVLYYAFGVFLNMEELDI 211
           AC G +        H    + G+  S V + N+L+DMY      +  A  VF ++     
Sbjct: 118 ACKGMKALSCGALAHSLATKHGIDRS-VYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW +LI+G  + G G   L  F  M      P+ ++ SI   AC  + +   GKQ+ A 
Sbjct: 177 VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAA 236

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             K G   ++ V+++ +D++ +CN L D+ R F +L   +    N +I+ Y R    E +
Sbjct: 237 VTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSDSSE-S 295

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L LF  M  E  +P  FT + + ++   +  +  G Q H   ++ GFD N  + +SL++M
Sbjct: 296 LSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDM 355

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK GSI  S ++F  +  RDLVSW T+M+G   +G   E + +F+E+++ G+ PDRI  
Sbjct: 356 YAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVF 415

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             VL  C++ G VDKG+  F +M E+Y + P +E Y C++DLL +AG++ +A  +   MP
Sbjct: 416 MGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
           F+P  S+W ++L A   Y    L    A+R++D +      Y LL++ YA  G+W    +
Sbjct: 476 FEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAK 535

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           ++K+M+     K  G SWI I+N +Y+F  G       + ++ V+ +L W M+D+G
Sbjct: 536 MRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDDG 591



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 67/442 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K+       H    K G +   Y+ N  LD+Y+                 
Sbjct: 113 SSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYA----------------- 155

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +C +             +D AL VF++IP    VSW ++I+G+   G     L  F +M
Sbjct: 156 ASCAT-------------MDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQM 202

Query: 139 QLQGVRPSGFTFSI---LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L+ V P+ F+FSI     +++SS   GKQIH ++ + GL     V+ NS++DMY +   
Sbjct: 203 LLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVM-NSILDMYCRCNY 261

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  + E ++I+WN+LI+G   S   E +L  F+ M   GY P+ +T + +  A
Sbjct: 262 LCDAKRCFGELTEKNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTFTSITAA 320

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L  G+QV    V+ GF  N  ++++ ID+++KC  + DS +LF  +   D    
Sbjct: 321 CANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSW 380

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
             M+  YG +G+G+ A++LF  M++  I+P       VL              H+  +  
Sbjct: 381 TTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCS----------HAGLVDK 430

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G         S++E Y    +I+   EI+             ++  L + GR  E   + 
Sbjct: 431 GLK----YFRSMLEDY----NINPDQEIY-----------RCVVDLLGRAGRVEEAFQLV 471

Query: 436 EELLEEGLPPDRITLAAVLLAC 457
           E +  E   PD     A+L AC
Sbjct: 472 ENMPFE---PDESVWGALLGAC 490



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 14/299 (4%)

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
           V   +LI  Y   G+   A  +F  + E D+++W ++I G  +  +   A   F  M  S
Sbjct: 44  VWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRS 103

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF-SKCNRLED 299
              P+ +T+S V+ AC  ++ L  G    +L+ K G   +  V +A +D++ + C  ++D
Sbjct: 104 EVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDD 163

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
           ++ +F  +          +I+ +   G G   L  F+ ML ED+ P  F+ S    +   
Sbjct: 164 ALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACAS 223

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           I     G Q H+   K G   +A V +S+++MY +   +  +   F +L +++L++WNT+
Sbjct: 224 ISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTL 283

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN-----------YGGFVDKG 466
           + G  +   ++E+L +F ++  EG  P+  T  ++  AC            +GG V +G
Sbjct: 284 IAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRG 341



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 96/204 (47%), Gaps = 6/204 (2%)

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           +V A++L++ Y   G    +  +F ++ +RD+V+W  +++G T      +   +F E+L 
Sbjct: 43  SVWATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR 102

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA-GQL 499
             + P+  T+++VL AC     +  G L  S +  ++G+         ++D+   +   +
Sbjct: 103 SEVQPNAFTMSSVLKACKGMKALSCGALAHS-LATKHGIDRSVYVQNALLDMYAASCATM 161

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLLTQ 557
             A+ + + +P +   S W +++      GD   +  +A R M L+   P+   +S+  +
Sbjct: 162 DDALSVFNDIPLKTAVS-WTTLIAGFTHRGD-GYSGLLAFRQMLLEDVGPNSFSFSIAAR 219

Query: 558 AYAMRGRWEAIVRVKKVMRKNGIN 581
           A A    +    ++   + K G++
Sbjct: 220 ACASISSYSCGKQIHAAVTKYGLH 243


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 304/538 (56%), Gaps = 5/538 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+  L  A +VFD +PE + V+W +MISGYA    +  A E+F  M+ +    + F F+ 
Sbjct: 158 KAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTS 217

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +LS ++       GKQIH   +++GL +   +L N+L+ MY K G L  +  VF    + 
Sbjct: 218 VLSALAVPEFVDSGKQIHCLAVKTGLLVFLSIL-NALVTMYAKCGSLDDSLQVFEMSNDK 276

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + I+W+++I+G   SG    AL  F  M ++G +P E+T+  V+NAC+    +++GKQV 
Sbjct: 277 NSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVH 336

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K+GF S   +++A +D+++K    ED+ + F  L + D  +   MI+ Y + G  E
Sbjct: 337 NYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENE 396

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL L+  M  E I P E T++ VL +   +   + G Q H+  IK G      + S+L 
Sbjct: 397 DALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALS 456

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYAK G+++    +F ++ +RD++SWN ++ GL+QNG   E L++FEE+ ++   PD +
Sbjct: 457 TMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDV 516

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G VD G L F  M +E+G++P  EHYAC++D+L +AG+L +A +   +
Sbjct: 517 TFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIES 576

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
                G  +W  +L A   Y + +L     E++M+L       Y LL+  Y   GR E +
Sbjct: 577 TTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDV 636

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            RV+ +M+  G++K  GCSWI +K+ ++ F  G+  H    +I   +  L+ +M+DEG
Sbjct: 637 ERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEIRTEILRLSKQMKDEG 694



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 211/380 (55%), Gaps = 7/380 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY--SDYALEMFSKMQLQGVRPSGFTF 150
           K  +L  A  VFD I   DV+SWN +I+GY+  G   S + +E+F +M+   + P+  TF
Sbjct: 55  KCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTF 114

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           S +    S +SS   G+Q H   I+      +V +G+SL++MY K G+L+ A  VF  M 
Sbjct: 115 SGIFTAASNLSSIFFGQQAHAVAIKMA-CFYDVFVGSSLLNMYCKAGLLFEAREVFDRMP 173

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E + ++W ++ISG         A + F  MR      +E+  + V++A      +D GKQ
Sbjct: 174 ERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQ 233

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  L+VK G L    +L+A + +++KC  L+DS+++FE  +  +    + MI+ Y + G 
Sbjct: 234 IHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGD 293

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASS 386
              AL+LF  M    I P+EFTL  VL++      VE G Q H+  +K GF+S   + ++
Sbjct: 294 SHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTA 353

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MYAK+G  + + + F  L + DLV W +++ G  QNG   + L ++  +  EG+ P+
Sbjct: 354 LVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPN 413

Query: 447 RITLAAVLLACNYGGFVDKG 466
            +T+A+VL AC+     D+G
Sbjct: 414 ELTMASVLKACSNLAAFDQG 433



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 164/328 (50%), Gaps = 35/328 (10%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D  K IH    K G      + N  + +Y++ G+ DD LQ+F+    KN I+W+  + G 
Sbjct: 229 DSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITG- 287

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                                         YA  G S  AL++FS+M   G+ PS FT  
Sbjct: 288 ------------------------------YAQSGDSHKALKLFSRMHFAGINPSEFTLV 317

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L+  S AC    GKQ+H  +++ G   S + +  +L+DMY K GV   A   F  +++
Sbjct: 318 GVLNACSDACAVEEGKQVHNYLLKLGFE-SQLYIMTALVDMYAKSGVTEDARKGFNYLQQ 376

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++ W S+I+G   +G  E AL  +  M+  G  P+E T++ V+ AC+ L   D+G+Q+
Sbjct: 377 PDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQI 436

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A ++K G      + SA   +++KC  LE+   +F ++   D    N MIS   + G+G
Sbjct: 437 HARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYG 496

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSS 356
           + ALELF+ M ++D +P + T   VLS+
Sbjct: 497 KEALELFEEMRQQDTKPDDVTFVNVLSA 524



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 3/335 (0%)

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           M L     S F   +  +   S   G+ +H  +I+   S S + L NSLI+ Y K   L 
Sbjct: 1   MPLHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLP 60

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGY--GELALDQFYSMRYSGYSPDEYTISIVINA 255
            A  VF  +   D+ISWN LI+G    G       ++ F  MR     P+ +T S +  A
Sbjct: 61  KAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTA 120

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            + L ++  G+Q  A+++K+    +  V S+ ++++ K   L ++  +F+++   +    
Sbjct: 121 ASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTW 180

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
             MIS Y        A E+F+LM RE+    EF  + VLS++ +P  V+ G Q H +A+K
Sbjct: 181 ATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVK 240

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      + ++L+ MYAK GS+D S ++F   + ++ ++W+ ++ G  Q+G + + L +
Sbjct: 241 TGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKL 300

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           F  +   G+ P   TL  VL AC+    V++G  V
Sbjct: 301 FSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQV 335



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 144/289 (49%), Gaps = 36/289 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C    + +  K +H +L KLGF +  Y+    +D+Y++ G ++D            
Sbjct: 319 VLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTED------------ 366

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A K F+ + +PD+V W SMI+GY   G ++ AL ++ +MQ+
Sbjct: 367 -------------------ARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQM 407

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G+ P+  T + +L   S+      G+QIH   I+ GL L  V +G++L  MY K G L 
Sbjct: 408 EGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGL-EVTIGSALSTMYAKCGNLE 466

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               VF  M E DIISWN++ISG   +GYG+ AL+ F  MR     PD+ T   V++AC+
Sbjct: 467 EGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACS 526

Query: 258 KLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            +  +D G   F +   + G L      +  +D+ S+  +L ++    E
Sbjct: 527 HMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIE 575



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  +FD  + IH    K G      +G+    +Y++ G  ++   +F  +P+
Sbjct: 418 ASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPE 477

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           ++ ISWN  + GL ++     AL++F+E+ +    PD V++ +++S  +  G  D     
Sbjct: 478 RDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLY 537

Query: 135 FSKMQLQ-GVRPSGFTFSILLSTVSSAC---HGKQ-IHGSMIRSGLSLSNVVLG 183
           F  M  + G+ P    ++ ++  +S A      K+ I  + I  GL L  ++LG
Sbjct: 538 FRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLG 591


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 331/613 (53%), Gaps = 65/613 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + +S D  K +H  L   GF   T++GN  +D+Y+                       
Sbjct: 185 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA----------------------- 221

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL--QG 142
                   K D+ ++ LKVFDE+ E + V+WNS+IS  A  G+ + AL +F +MQ    G
Sbjct: 222 --------KCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDG 273

Query: 143 VRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           ++P  FTF+ LL+  ++      G+QIH  +IR+ ++  N+++   L+ MY + G L YA
Sbjct: 274 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT-KNIIVETELVHMYSECGRLNYA 332

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             +F  M E +  SWNS+I G   +G  + AL  F  M+ +G  PD +++S ++++C  L
Sbjct: 333 KEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 392

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY--AVINV 317
            +  KG+++    V+       I+    +D+++KC  ++ + ++++Q  + D   A+ N 
Sbjct: 393 SDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNS 452

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF 377
           +++ Y   G  + +   F  ML  DI     T+  +++ +                    
Sbjct: 453 ILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLL-------------------- 492

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
               V+ ++L++MY+K G+I  +  +F  ++ +++VSWN ++ G +++G + E L ++EE
Sbjct: 493 ----VLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEE 548

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           + ++G+ P+ +T  A+L AC++ G V++G+ +F++M+E+Y +    EHY C++DLL +AG
Sbjct: 549 MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 608

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           +L  A +    MP +P  S W ++L A  ++ D+ +    A+R+ +L   +P PY +++ 
Sbjct: 609 RLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSN 668

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            YA  GRW+ +  ++++M+  G+ K  G SWI I + I  F+AG   H   ++IY  LR 
Sbjct: 669 IYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRH 728

Query: 618 LTWEMEDEGCVYL 630
           LT  ++ +G  Y+
Sbjct: 729 LT--LQSKGLGYI 739



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 204/406 (50%), Gaps = 23/406 (5%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL---YYAFGVFLNMEELDIISWNSLIS 219
           GK IH  MI +G +  +  L   ++ +Y + G L    YA  +F  M E ++ +WN++I 
Sbjct: 90  GKSIHTQMISNGYN-PDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMIL 148

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
                     A   F  M   G  PD +T +  +  C  LR+ D GKQV +  +  GF  
Sbjct: 149 AYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG 208

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           ++ V +A ID+++KC+  E  +++F+++   +    N +IS   ++G    AL LF  M 
Sbjct: 209 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 268

Query: 340 RED--IRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
             +  I+P +FT + +L+       ++ G Q H+  I++    N +V + L+ MY++ G 
Sbjct: 269 ESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 328

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++ + EIF ++ +R+  SWN+++ G  QNG   E L +F+++   G+ PD  +L+++L +
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 457 CNYGGFVDKG-----MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI-TSTMP 510
           C       KG      +V + M+EE G++        ++D+  + G +  A  +   T+ 
Sbjct: 389 CVSLSDSQKGRELHNFIVRNTMEEE-GILQ-----VVLVDMYAKCGSMDYAWKVYDQTIK 442

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
                ++W SIL   A Y +  L +      +++ L S + Y +LT
Sbjct: 443 KDRNTALWNSIL---AGYANKGLKKESFNHFLEM-LESDIEYDVLT 484


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 328/607 (54%), Gaps = 40/607 (6%)

Query: 30  SFDFAKT---IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S D A T   +H +++KLG  A  ++G   +D YS  G                      
Sbjct: 116 SMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCG---------------------- 153

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                    N+D A +VFD I   D+VSW  M++ YA     + +L +F +M++ G RP+
Sbjct: 154 ---------NVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPN 204

Query: 147 GFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT S  L +   + +   GK +HG  ++      ++ +G +L+++Y K G +  A   F
Sbjct: 205 NFTISAALKSCNGLEAFKVGKSVHGCALKVCYD-RDLYVGIALLELYTKSGEIAEAQQFF 263

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVINACTKLRNL 262
             M + D+I W+ +IS    S   + AL+ F  MR S    P+ +T + V+ AC  L  L
Sbjct: 264 EEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLL 323

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           + G Q+ +  +KVG  SN  V +A +D+++KC  +E+SV+LF      +    N +I  Y
Sbjct: 324 NLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGY 383

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNA 381
            + G GE AL LF  ML  DI+PTE T S VL +S  +  +E G Q HS+ IK+ ++ ++
Sbjct: 384 VQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDS 443

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           VVA+SL++MYAK G ID +   F K+DK+D VSWN ++ G + +G   E L++F+ + + 
Sbjct: 444 VVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQS 503

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
              P+++T   VL AC+  G +DKG   F +M ++YG+ P  EHY C++ LL ++GQ  +
Sbjct: 504 NSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDE 563

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A+ +   +PFQP   +W ++L A  I+ ++ L +  A+R+++++      + LL+  YA 
Sbjct: 564 AVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYAT 623

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             RW+ +  V+K M+K  + K  G SW+  +  ++ F  G+  H   + I+ +L  L  +
Sbjct: 624 AKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKK 683

Query: 622 MEDEGCV 628
             D G V
Sbjct: 684 TRDAGYV 690



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 195/391 (49%), Gaps = 38/391 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C   ++F   K++HG   K+ ++   Y+G   L+LY++ G   +  Q F+E+P+
Sbjct: 209 SAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPK 268

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I W++                               MIS YA    S  ALE+F +M
Sbjct: 269 DDLIPWSL-------------------------------MISRYAQSDKSKEALELFCRM 297

Query: 139 -QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            Q   V P+ FTF+ +L   +S      G QIH  +++ GL  SNV + N+L+D+Y K G
Sbjct: 298 RQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLD-SNVFVSNALMDVYAKCG 356

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  +  +F    E + ++WN++I G    G GE AL+ F +M      P E T S V+ 
Sbjct: 357 EIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR 416

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A   L  L+ G+Q+ +L++K  +  +S+V ++ ID+++KC R++D+   F+++D+ D   
Sbjct: 417 ASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVS 476

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMA 372
            N +I  Y  +G G  AL LF +M + + +P + T   VLS+     +  +  + F SM 
Sbjct: 477 WNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSML 536

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
              G +      + ++ +  ++G  D + ++
Sbjct: 537 QDYGIEPCIEHYTCMVWLLGRSGQFDEAVKL 567



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 193/423 (45%), Gaps = 6/423 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK +H  +++ G SL ++   N L++ Y   G L  A  +F  M   + +S+ +L  G  
Sbjct: 22  GKSLHCHILKHGASL-DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFS 80

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            S   + A      +   GY  +++  + ++     +   D    V A   K+G  +++ 
Sbjct: 81  RSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAF 140

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A ID +S C  ++ + ++F+ +   D      M++ Y      E +L LF  M    
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            RP  FT+S  L S   +   + G   H  A+K  +D +  V  +L+E+Y K+G I  + 
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQ 260

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYG 460
           + F ++ K DL+ W+ ++    Q+ ++ E L++F  + +   + P+  T A+VL AC   
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             ++ G  + S +  + G+         ++D+  + G++  ++ +  T   +     W +
Sbjct: 321 VLLNLGNQIHSCVL-KVGLDSNVFVSNALMDVYAKCGEIENSVKLF-TGSTEKNEVAWNT 378

Query: 521 ILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           I+      GD +   N+   M+ L + P+ + YS + +A A     E   ++  +  K  
Sbjct: 379 IIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTM 438

Query: 580 INK 582
            NK
Sbjct: 439 YNK 441



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 124/273 (45%), Gaps = 14/273 (5%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D ++ + ++    + R+ + GK +    +K G   +    +  ++ +     LED+ +LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVE 363
           +++   +      +   + R    + A  L   + RE     +F  + +L   + +   +
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
                H+   K G  ++A V ++L++ Y+  G++D++ ++F  +  +D+VSW  ++    
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG----V 479
           +N    ++L +F ++   G  P+  T++A L +CN       G+  F   K  +G    V
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKV 234

Query: 480 MPGEEHYACI--IDLLCQAGQLGKAIDITSTMP 510
               + Y  I  ++L  ++G++ +A      MP
Sbjct: 235 CYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP 267


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 192/608 (31%), Positives = 318/608 (52%), Gaps = 61/608 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+  CL+ KS   AK +H H+ +  F      LGN+ + +Y + G+              
Sbjct: 70  LLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGS-------------- 115

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                            L  A +VFDE+P  +VVSW +MI+ YA   +   AL  F +MQ
Sbjct: 116 -----------------LVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQ 158

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
             G++P+ FTF+ +L   +      + H  +++ G   SNV +GN L+DMY K G + +A
Sbjct: 159 DVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFE-SNVFVGNGLVDMYAKRGCIEFA 217

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQF----------YSMRYSGYS------ 243
             +F  M + D++SWN++I+G   +G  E AL  F          ++   +GY+      
Sbjct: 218 RELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVE 277

Query: 244 ---------PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
                    P++  +S        ++N    K+ F L  ++    N I  +A I  F++ 
Sbjct: 278 NAVELFEKMPEQNLVSWNTMIAGYVQN-GSVKEAFKL-FQIMPERNVISWNAVISGFAQN 335

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
            ++E++++LF+ +   +    N MI+ Y + G  E AL+LF  M   D++P   T + VL
Sbjct: 336 GQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVL 395

Query: 355 SS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +   +  +E G++ H + I+SGF S+ +V ++L+ MYAK GSI+ + ++F ++ ++D  
Sbjct: 396 PACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSA 455

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           S + +++G   NG + E+L++FE++   GL PDR+T   VL AC + G VD+G   F  M
Sbjct: 456 SLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIM 515

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
              Y + P  EHY C+IDLL +AG   +A D+ + MP +P   +W S+L A   + ++ L
Sbjct: 516 TRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDL 575

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E VA+ ++ L   +P PY LL+  YA  GRW+ I  V+  M+   + K  GCSWI IK 
Sbjct: 576 GEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKK 635

Query: 594 RIYTFNAG 601
           +++ F  G
Sbjct: 636 QVHAFLVG 643


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 315/605 (52%), Gaps = 36/605 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S         +H +LFK G ++   +    LDLY + G              
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCG-------------- 293

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +++TAL +F+     +VV WN M+  +        + E+F +M
Sbjct: 294 -----------------DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQM 336

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+RP+ FT+  +L T +       G+QIH   +++G   S++ +   LIDMY K G 
Sbjct: 337 QAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGW 395

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  V   ++E D++SW S+I+G       + AL  F  M+  G  PD   ++  I+ 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +  + +G Q+ A     G+  +  + +A ++L+++C R+ ++   FE+++  D    
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITG 515

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
           N ++S + + G  E AL++F  M +  ++   FT    LS S  +  ++ G Q H+  IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      V ++L+ +Y K GS + +   F ++ +R+ VSWNTI+   +Q+GR  E LD+
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDL 635

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++ +EG+ P+ +T   VL AC++ G V++G+  F +M +EYG+ P  +HYAC+ID+  
Sbjct: 636 FDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFG 695

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AGQL +A      MP      +W ++L A  ++ ++++ E  A+ +++L+      Y L
Sbjct: 696 RAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVL 755

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+ AYA+  +W    +V+K+MR  G+ K  G SWI +KN ++ F  G+  H   ++IY  
Sbjct: 756 LSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNF 815

Query: 615 LRLLT 619
           L ++ 
Sbjct: 816 LAVIN 820



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 226/433 (52%), Gaps = 36/433 (8%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           + +     IH      G   +  +GN  +DLYS+ G           +P           
Sbjct: 56  RRWQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLV---------LP----------- 95

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                      A +VF+E+   D VSW +M+SGYA  G  + AL ++ +M   GV P+ +
Sbjct: 96  -----------ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPY 144

Query: 149 TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
             S +LS+ + A     G+ IH    + G   S + +GN++I +Y + G    A  VF +
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCD 203

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +++N+LISG    G+GE AL+ F  M++SG SPD  TIS ++ AC  L +L KG
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ +   K G  S+ I+  + +DL+ KC  +E ++ +F   DR +  + N+M+  +G+ 
Sbjct: 264 TQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQI 323

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVA 384
                + ELF  M    IRP +FT  C+L +      ++ G Q HS+++K+GF+S+  V+
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             L++MY+K G ++ +  +   L ++D+VSW +++ G  Q+    + L  F+E+ + G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 445 PDRITLAAVLLAC 457
           PD I LA+ +  C
Sbjct: 444 PDNIGLASAISGC 456



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 217/442 (49%), Gaps = 36/442 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   + F   + IH   +K GF +  ++GN  + LY R G+             
Sbjct: 147 SSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGS------------- 193

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VF ++P  D V++N++ISG+A CG+ ++ALE+F +M
Sbjct: 194 ------------------FRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM 235

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+ P   T S LL+  +S      G Q+H  + ++G+S S+ ++  SL+D+Y K G 
Sbjct: 236 QFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGIS-SDYIMEGSLLDLYVKCGD 294

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F + +  +++ WN ++           + + F  M+ +G  P+++T   ++  
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT  R +D G+Q+ +LSVK GF S+  V    ID++SK   LE + R+ E L   D    
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+ Y ++   + AL  F+ M +  I P    L+  +S    I  +  G Q H+    
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG+  +  + ++L+ +YA+ G I  +   F +++ +D ++ N ++ G  Q+G   E L V
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKV 534

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
           F  + + G+  +  T  + L A
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSA 556



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 2/308 (0%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           +IH   +  GL    +V GN LID+Y K G++  A  VF  +   D +SW +++SG   +
Sbjct: 63  EIHAKAVTRGLGKYRIV-GNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G GE AL  +  M  +G  P  Y +S V+++CTK     +G+ + A   K GF S   V 
Sbjct: 122 GLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A I L+ +C     + R+F  +   D    N +IS + + G GE ALE+F+ M    + 
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T+S +L++   +  ++ G+Q HS   K+G  S+ ++  SL+++Y K G ++++  I
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F   D+ ++V WN +++   Q    A++ ++F ++   G+ P++ T   +L  C     +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 464 DKGMLVFS 471
           D G  + S
Sbjct: 362 DLGEQIHS 369


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 178/615 (28%), Positives = 323/615 (52%), Gaps = 42/615 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C   K+    + IH  ++K G +   ++    +D+Y                    
Sbjct: 36  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMY-------------------- 75

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                      +K   ++ A  +FD++ E D+V+W  MI GYA CG ++ +L +F KM+ 
Sbjct: 76  -----------VKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 124

Query: 141 QGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +GV P      + + TV  AC      H  +I    I+      +V+LG ++IDMY K G
Sbjct: 125 EGVVPD----KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  +F  MEE ++ISW+++I+     G G  ALD F  M  SG  PD+ T++ ++ 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+ L+NL  G+ +  +  K G   +  V +A +D++ KC  +ED+  LF+++   D   
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAI 373
             VMI  Y   G    +L LF  M  E + P +  + + V +   +  +           
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           +  F  + ++ +++++M+AK G ++S+ EIF ++++++++SW+ ++     +G+  + LD
Sbjct: 361 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 420

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F  +L  G+ P++ITL ++L AC++ G V++G+  FS M E+Y V    +HY C++DLL
Sbjct: 421 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLL 480

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG+L +A+ +  +M  +    +W + L A   + DV L E  A  +++LQ  +P  Y 
Sbjct: 481 GRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYI 540

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL+  YA  GRWE + + + +M +  + K+ G +WI + N+ + F+ G+  H   ++IY 
Sbjct: 541 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYE 600

Query: 614 VLRLLTWEMEDEGCV 628
           +L+ L  ++E  G V
Sbjct: 601 MLKSLGNKLELVGYV 615



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 212/419 (50%), Gaps = 13/419 (3%)

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSG 174
           M+ G+A  G        F ++   G RP  +T   ++     + +   G+ IH  + + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
           L L + V   +L+DMY K   +  A  +F  M+E D+++W  +I G    G    +L  F
Sbjct: 61  LDLDHFVCA-ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             MR  G  PD+  +  V+ AC KL  + K + +     +  F  + I+ +A ID+++KC
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             +E +  +F++++  +    + MI+ YG +G G  AL+LF++ML   + P + TL+ +L
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +   +  ++ G   H +  K G D +  V ++L++MY K   I+ +  +F K+ +RDLV
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLV 299

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV---F 470
           +W  ++ G  + G A E+L +F+++ EEG+ PD++ +  V+ AC   G + K   +    
Sbjct: 300 TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 359

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
              K +  V+ G      +ID+  + G +  A +I   M  +   S W +++ A   +G
Sbjct: 360 QRKKFQLDVILG----TAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHG 413



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 140/301 (46%), Gaps = 52/301 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C   K+    + IH  ++K G +   ++    +D+Y +    +D   LFD++P+
Sbjct: 236 ASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPE 295

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++W + + G  +  N + +L +FD                               KM
Sbjct: 296 RDLVTWTVMIGGYAECGNANESLVLFD-------------------------------KM 324

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + +GV P      + + TV  AC         + I   + R    L +V+LG ++IDM+ 
Sbjct: 325 REEGVVPD----KVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL-DVILGTAMIDMHA 379

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  +F  MEE ++ISW+++I+     G G  ALD F  M  SG  P++ T+  
Sbjct: 380 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVS 439

Query: 252 VINACTKLRNLDKGKQVFAL-----SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           ++ AC+    +++G + F+L     SV+      + V    +DL  +  RL+++++L E 
Sbjct: 440 LLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCV----VDLLGRAGRLDEALKLIES 495

Query: 307 L 307
           +
Sbjct: 496 M 496


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 194/675 (28%), Positives = 336/675 (49%), Gaps = 75/675 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF--------------- 63
           S ++  C   K F   + IH  ++K  F + T++GN  + LY  F               
Sbjct: 148 SSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 64  ----------------GTSDDVLQLFDEIP----QKNCI--------------------- 82
                           G  +  LQ+FDE+     + +C+                     
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 83  ---------SWNICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                    S++    G L     K  +++TA  +F+     +VV WN M+  Y      
Sbjct: 268 HSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDL 327

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
             + E+F +MQ  G+ P+ FT+  +L T +       G+QIH   I++G   S++ +   
Sbjct: 328 AKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE-SDMYVSGV 386

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K G L  A  +   +E+ D++SW S+I+G     + E AL  F  M+  G  PD
Sbjct: 387 LIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPD 446

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
              ++   +AC  ++ + +G Q+ A     G+ ++  + +  ++L+++C R E++  LF 
Sbjct: 447 NIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFR 506

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           +++  D    N +IS +G+    + AL +F  M +   +   FT    +S++  +  ++ 
Sbjct: 507 EIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQ 566

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H  A+K+G  S   VA++L+ +Y K GSI+ +  IF ++  R+ VSWNTI+   +Q
Sbjct: 567 GKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQ 626

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +GR  E LD+F+++ +EGL P+ +T   VL AC++ G V++G+  F +M   YG+ P  +
Sbjct: 627 HGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPD 686

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC++D+L +AGQL +A      MP      IW ++L A  ++ ++++ E  A+ +++L
Sbjct: 687 HYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLEL 746

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+ AYA+ G+W    +V+K+M+  GI K  G SWI +KN ++ F  G+  
Sbjct: 747 EPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRL 806

Query: 605 HHGGQKIYLVLRLLT 619
           H    +IY  L  L 
Sbjct: 807 HPLSDQIYKFLSELN 821



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 214/425 (50%), Gaps = 36/425 (8%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH      G  A   +GN  +DLY+                 KN + W            
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYA-----------------KNGLVWQ----------- 96

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              A +VF E+   D VSW +M+SGYA  G    A  ++S+M    V P+ +  S +LS 
Sbjct: 97  ---ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSA 153

Query: 157 VSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +       G+ IH  + +     S   +GN+LI +Y   G    A  VF +M   D ++
Sbjct: 154 CTKGKLFAQGRMIHAQVYKQAFC-SETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVT 212

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N+LISG    G+GE AL  F  M+ SG  PD  T++ ++ AC  + +L KGKQ+ +  +
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G   + I   + +DL+ KC  +E +  +F   DR +  + N+M+  YG+      + E
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M    I P +FT  C+L +      +E G Q HS++IK+GF+S+  V+  L++MY+
Sbjct: 333 IFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYS 392

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +D + +I   L+KRD+VSW +++ G  Q+    E L  F+E+ + G+ PD I LA+
Sbjct: 393 KYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLAS 452

Query: 453 VLLAC 457
              AC
Sbjct: 453 AASAC 457



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 185/361 (51%), Gaps = 11/361 (3%)

Query: 154 LSTVSSACHGK--------QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           L+    AC G+        +IH + +  GL  ++ ++GN LID+Y K G+++ A  VF  
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLG-ADRLIGNLLIDLYAKNGLVWQARQVFKE 103

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           +   D +SW +++SG   SG G+ A   +  M ++   P  Y +S V++ACTK +   +G
Sbjct: 104 LSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG 163

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           + + A   K  F S + V +A I L+      + + R+F  +   D    N +IS + + 
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC 223

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G GE AL++F  M    +RP   T++ +L++   +  ++ G Q HS  +K+G   + +  
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE 283

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
            SL+++Y K G I+++ +IF   D+ ++V WN +++   Q    A++ ++F ++   G+ 
Sbjct: 284 GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P++ T   +L  C   G ++ G  + S +  + G          +ID+  + G L KA  
Sbjct: 344 PNQFTYPCILRTCTCTGQIELGEQIHS-LSIKNGFESDMYVSGVLIDMYSKYGCLDKARK 402

Query: 505 I 505
           I
Sbjct: 403 I 403


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 284/502 (56%), Gaps = 7/502 (1%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
           ALE F +M   G +P+ F     L++ +   +   G QIH  +I++G    N+ L ++L+
Sbjct: 85  ALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFE-DNLFLNSALV 143

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D+Y K   +  A  VF  ME+ D +SW S+ISG   +G G+ A+  F  M  S   P+  
Sbjct: 144 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 203

Query: 248 TISIVINACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           T   VI+ACT L  + D+   + A  VK+GF   + V+S  ID +SKC R++ +V LF  
Sbjct: 204 TYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGT 263

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHG 365
               D  + N MIS Y +  FGE AL+LF  M    + PT+ TL+ +L++   +  ++ G
Sbjct: 264 TIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQG 323

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q HS+  K G +SN  V S+L++MY+K GSID +  +F +  +++ V W +++ G  Q+
Sbjct: 324 RQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQS 383

Query: 426 GRAAETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           GR  E L +FE L+ EEG  PD I   AVL ACN+ GF+DKG+  F+ M+ +YG++P  +
Sbjct: 384 GRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLD 443

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
            YAC++DL  + G L KA ++   +P +P   +W S L +  +YG+ +L    A+++  +
Sbjct: 444 QYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFKM 503

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +  S  PY  +   YA  G W  +V ++K+M++ G+ K  G SW+ +  R++ F   +  
Sbjct: 504 EPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEVDKRVHVFLVADAS 563

Query: 605 HHGGQKIYLVLRLLTWEMEDEG 626
           H   + I + L  L  EM++ G
Sbjct: 564 HPRSRDICVELERLNLEMKEVG 585



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 196/419 (46%), Gaps = 48/419 (11%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           ++ C    ++     IH  + + GF  + +L +  +DLY++     D  ++FD       
Sbjct: 108 LNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFD------- 160

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                   G+ K D                 VSW S+ISG++  G    A+  F +M   
Sbjct: 161 --------GMEKHDQ----------------VSWTSIISGFSKNGRGKEAILFFKEMLGS 196

Query: 142 GVRPSGFTFSILLSTVSSACHGKQ--------IHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            ++P+  T+     +V SAC G +        +H  +++ G  +   V+ + LID Y K 
Sbjct: 197 QIKPNCVTY----VSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVV-SCLIDCYSKC 251

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F    E D I +NS+ISG   + +GE AL  F  MR +G +P ++T++ ++
Sbjct: 252 GRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSIL 311

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           NAC  L  L +G+QV +L  K+G  SN  V+SA +D++SKC  ++++  +F+Q    +  
Sbjct: 312 NACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTV 371

Query: 314 VINVMISTYGRYGFGEVALELFQ-LMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHS 370
           +   MI+ Y + G G   L LF+ L+  E   P     + VL++      ++ G   F+ 
Sbjct: 372 LWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQ 431

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRA 428
           M    G   +    + L+++Y + G +  + E+   +  + + V W + +      G A
Sbjct: 432 MRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEA 490



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 40/333 (12%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKS-FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           + +    ++Y S +I  C   ++ FD    +H H+ KLGF   T++ +  +D YS+ G  
Sbjct: 196 SQIKPNCVTYVS-VISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCG-- 252

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
                                         +D A+ +F    E D + +NSMISGY+   
Sbjct: 253 -----------------------------RIDQAVLLFGTTIERDNILFNSMISGYSQNL 283

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLG 183
           + + AL++F +M+  G+ P+  T + +L+   S      G+Q+H  + + G S SNV + 
Sbjct: 284 FGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMG-SESNVFVV 342

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGY 242
           ++L+DMY K G +  A  VF    E + + W S+I+G   SG G   L  F  +    G+
Sbjct: 343 SALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGF 402

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           +PD    + V+ AC     LDKG   F  +    G + +    +  +DL+ +   L  + 
Sbjct: 403 TPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAK 462

Query: 302 RLFEQLDRWDYAVI-NVMISTYGRYGFGEVALE 333
            L E +     +V+    +S+   YG  E+  E
Sbjct: 463 ELMEAIPCEPNSVMWGSFLSSCKLYGEAELGRE 495


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 198/655 (30%), Positives = 330/655 (50%), Gaps = 70/655 (10%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            K++ S    LID+C + K     K +H H+ + G                         
Sbjct: 26  QKSNPSTVPILIDKCANKKHL---KQLHAHMLRTGL------------------------ 58

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
             FD  P      +  C   L    +LD A KVFD+IP P++ +WN++I  +AS      
Sbjct: 59  -FFD--PPSATKLFTAC--ALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQ 113

Query: 131 ALEMFSKMQLQGVR-PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            L +F +M  +  R P+ +TF  ++   + VSS   G+ IHG ++++    S++ + NSL
Sbjct: 114 GLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG-SDLFISNSL 172

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I  Y  LG L  A+ VF  + E DI+SWNS+ISG    G  E AL  F  M+     P+ 
Sbjct: 173 IHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNR 232

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T+  V++AC K  +L+ G+       + G   N I+ +A +D++ KC  LED+ RLF++
Sbjct: 233 VTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDK 292

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI----------------------- 343
           ++  D      MI  Y + G  + A  +F +M REDI                       
Sbjct: 293 MEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIF 352

Query: 344 ---------RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
                    +P E TL+  L++   +  ++ G   H    K G   N  + +SL++MY+K
Sbjct: 353 RELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSK 412

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G ++ + E+F  +++RD+  W+ ++ GL  +G     +D+F ++ E  + P+ +T   +
Sbjct: 413 CGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNL 472

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++ G VD+G L F+ M+  YGV+PG +HYAC++D+L +AG L +A+++   MP  P
Sbjct: 473 LCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVP 532

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
             S+W ++L A  IYG+V+L E    R+++    +   Y LL+  YA  G+W+ + R+++
Sbjct: 533 SASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQ 592

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            M+ +G+ K  GCS I +   I+ F  G+  H    +IY  L  +   ++  G V
Sbjct: 593 HMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYV 647


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/620 (30%), Positives = 317/620 (51%), Gaps = 46/620 (7%)

Query: 16  SYCSQLIDRCLS-FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +Y    + +C++   S +  + +HG L KLGF +   +GN  +  Y+             
Sbjct: 196 AYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYA------------- 242

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                             KS+    A+ VFD +P  DV+SWNSMISG  S G  D A+E+
Sbjct: 243 ------------------KSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIEL 284

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLI 187
           F +M L+G      T    L +V  AC        G+ +HG  +++G  +S   L N L+
Sbjct: 285 FVRMWLEGEELDSAT----LLSVLPACAELHLLFLGRVVHGYSVKTGF-ISQTSLANVLL 339

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY           +F NM + +++SW ++I+    +G  +     F  M   G  PD +
Sbjct: 340 DMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIF 399

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            I+  ++A      L  GK V   +++ G      V +A ++++ KC  +E++  +F+ +
Sbjct: 400 AITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGV 459

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGS 366
              D    N +I  Y R      A  LF  ML + +RP   T++C+L ++  +  +E G 
Sbjct: 460 VSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGR 518

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H+ A++ G+  +  VA++L++MY K G++  +  +F +L  ++L+SW  ++ G   +G
Sbjct: 519 EMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHG 578

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           R  + + +FE++   G+ PD  + +A+L AC++ G  D+G   F AM++E+ + P  +HY
Sbjct: 579 RGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHY 638

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL   G L +A +   +MP +P  SIW S+LR   I+ +VKL E VAER+ +L+ 
Sbjct: 639 TCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEP 698

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            +   Y LL   YA   RWEA+ ++K  +   G+ + TGCSWI  K +++ F A    H 
Sbjct: 699 ENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHP 758

Query: 607 GGQKIYLVLRLLTWEMEDEG 626
            G +I   L  +   M++EG
Sbjct: 759 QGTRIAEFLNEVAKRMQEEG 778



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 205/380 (53%), Gaps = 7/380 (1%)

Query: 92  LKSDNLDTALKVFDEIPE-PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           LK  +L+ A +VFDE+P+  DV  W +++SGYA  G     + +F KM   GVRP  +T 
Sbjct: 140 LKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTI 199

Query: 151 SILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           S +L  ++   S   G+ +HG + + G   S   +GN+L+  Y K      A  VF  M 
Sbjct: 200 SCVLKCIAGLGSIEDGEVVHGLLEKLGFG-SQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D+ISWNS+ISGC ++G  + A++ F  M   G   D  T+  V+ AC +L  L  G+ 
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRV 318

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           V   SVK GF+S + + +  +D++S C+    + ++F  + + +      MI++Y R G 
Sbjct: 319 VHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGL 378

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASS 386
            +    LFQ M  E  RP  F ++  L +      ++HG   H  AI++G +    V ++
Sbjct: 379 YDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNA 438

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           LMEMY K G+++ +  IF  +  +D++SWNT++ G ++N  A E   +F E+L + L P+
Sbjct: 439 LMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPN 497

Query: 447 RITLAAVLLACNYGGFVDKG 466
            +T+  +L A      +++G
Sbjct: 498 AVTMTCILPAAASLSSLERG 517



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS----NSIVLSATIDLFSKCNRLEDS 300
           D+ +   V+  C+++R+L+ GK+   L V+   L     ++++    + ++ KC  LE++
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFL-VRASSLGRDGMDNVLGQKLVLMYLKCGDLENA 148

Query: 301 VRLFEQLDRW-DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
            R+F+++ +  D  V   ++S Y + G     + LF+ M    +RP  +T+SCVL  I  
Sbjct: 149 RRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAG 208

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +  +E G   H +  K GF S   V ++LM  YAK+     +  +F  +  RD++SWN++
Sbjct: 209 LGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSM 268

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           + G T NG   + +++F  +  EG   D  TL +VL AC
Sbjct: 269 ISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPAC 307



 Score = 39.3 bits (90), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 359 IPPVEHGSQFHSMAIKSGFDSNA---VVASSLMEMYAKTGSIDSSTEIFVKLDK-RDLVS 414
           +  +E G + H +   S    +    V+   L+ MY K G ++++  +F ++ +  D+  
Sbjct: 104 VRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRV 163

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W  +M G  + G   E + +F ++   G+ PD  T++ VL      G ++ G +V   ++
Sbjct: 164 WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLE 223

Query: 475 E 475
           +
Sbjct: 224 K 224


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/614 (29%), Positives = 321/614 (52%), Gaps = 36/614 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C +  +    + +H +  KLGF ++  +    L+LY+                 
Sbjct: 353 ASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA----------------- 395

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K  +++TAL  F E    +VV WN M+  Y        +  +F +M
Sbjct: 396 --------------KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 441

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q++ + P+ +T+  +L T   +     G+QIH  +I++   L N  + + LIDMY KLG 
Sbjct: 442 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLGK 500

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A+ + +     D++SW ++I+G     + + AL  F  M   G   DE  ++  ++A
Sbjct: 501 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 560

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L+ L +G+Q+ A +   GF S+    +A + L+S+C ++E+S   FEQ +  D    
Sbjct: 561 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAW 620

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIK 374
           N ++S + + G  E AL +F  M RE I    FT  S V ++     ++ G Q H++  K
Sbjct: 621 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 680

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G+DS   V ++L+ MYAK GSI  + + F+++  ++ VSWN I+   +++G  +E LD 
Sbjct: 681 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDS 740

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F++++   + P+ +TL  VL AC++ G VDKG+  F +M  EYG+ P  EHY C++D+L 
Sbjct: 741 FDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLT 800

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A +    MP +P   +W ++L A  ++ ++++ E  A  +++L+      Y L
Sbjct: 801 RAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 860

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA+  +W+A    ++ M++ G+ K  G SWI +KN I++F  G+  H    +I+  
Sbjct: 861 LSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 920

Query: 615 LRLLTWEMEDEGCV 628
            + LT    + G V
Sbjct: 921 FQDLTKRASEIGYV 934



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 164/602 (27%), Positives = 281/602 (46%), Gaps = 77/602 (12%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +FD  + IH  +   G    T + N  +DLYSR G                         
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGF------------------------ 197

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  +D A +VFD +   D  SW +MISG +       A+ +F  M + G+ P+ + 
Sbjct: 198 -------VDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 250

Query: 150 FSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +LS    + S   G+Q+HG +++ G S S+  + N+L+ +Y  LG L  A  +F NM
Sbjct: 251 FSSVLSACKKIESLEIGEQLHGLVLKLGFS-SDTYVCNALVSLYFHLGNLISAEHIFSNM 309

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D +++N+LI+G    GYGE A++ F  M   G  PD  T++ ++ AC+    L +G+
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 369

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A + K+GF SN+ +  A ++L++KC  +E ++  F + +  +  + NVM+  YG   
Sbjct: 370 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 429

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               +  +F+ M  E+I P ++T   +L + I +  +E G Q HS  IK+ F  NA V S
Sbjct: 430 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 489

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK G +D++ +I ++   +D+VSW T++ G TQ     + L  F ++L+ G+  
Sbjct: 490 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 549

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D + L   + AC        G+    A+KE      G++ +A      C +G        
Sbjct: 550 DEVGLTNAVSAC-------AGL---QALKE------GQQIHA----QACVSG-------F 582

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
           +S +PFQ              +Y      E         +    + ++ L   +   G  
Sbjct: 583 SSDLPFQNAL---------VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           E  +RV   M + GI+         +K    T N  +     G++++ V+    ++ E E
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ-----GKQVHAVITKTGYDSETE 688

Query: 626 GC 627
            C
Sbjct: 689 VC 690



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/520 (24%), Positives = 241/520 (46%), Gaps = 48/520 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +S +  + +HG + KLGF++ TY+ N  + LY   G       +F  + Q
Sbjct: 252 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 311

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +++N                               ++I+G + CGY + A+E+F +M
Sbjct: 312 RDAVTYN-------------------------------TLINGLSQCGYGEKAMELFKRM 340

Query: 139 QLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L G+ P   T + L+   S   +   G+Q+H    + G + +N + G +L+++Y K   
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG-ALLNLYAKCAD 399

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL-----ALDQFYSMRYSGYSPDEYTIS 250
           +  A   FL  E  +++ WN ++       YG L     +   F  M+     P++YT  
Sbjct: 400 IETALDYFLETEVENVVLWNVML-----VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 454

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++  C +L +L+ G+Q+ +  +K  F  N+ V S  ID+++K  +L+ +  +  +    
Sbjct: 455 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 514

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D      MI+ Y +Y F + AL  F+ ML   IR  E  L+  +S+   +  ++ G Q H
Sbjct: 515 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 574

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           + A  SGF S+    ++L+ +Y++ G I+ S   F + +  D ++WN ++ G  Q+G   
Sbjct: 575 AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNE 634

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L VF  +  EG+  +  T  + + A +    + +G  V + + +  G     E    +
Sbjct: 635 EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAL 693

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           I +  + G +  A      +  +   S W +I+ A + +G
Sbjct: 694 ISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG 732



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 237/500 (47%), Gaps = 57/500 (11%)

Query: 21  LIDRCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L++ CL    S D  + +H  + KLG +++  L  +  D Y                   
Sbjct: 50  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY------------------- 90

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                      L K D L  A KVFDE+PE  + +WN MI   AS         +F +M 
Sbjct: 91  -----------LFKGD-LYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMV 138

Query: 140 LQGVRPSGFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            + V P+  TFS +L     AC G        +QIH  ++  GL  S VV  N LID+Y 
Sbjct: 139 SENVTPNEGTFSGVLE----ACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYS 193

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G +  A  VF  +   D  SW ++ISG   +     A+  F  M   G  P  Y  S 
Sbjct: 194 RNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 253

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++AC K+ +L+ G+Q+  L +K+GF S++ V +A + L+     L  +  +F  + + D
Sbjct: 254 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 313

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHS 370
               N +I+   + G+GE A+ELF+ M  + + P   TL S V++      +  G Q H+
Sbjct: 314 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 373

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM--GLTQNGRA 428
              K GF SN  +  +L+ +YAK   I+++ + F++ +  ++V WN +++  GL  + R 
Sbjct: 374 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR- 432

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYA 487
             +  +F ++  E + P++ T  ++L  C   G ++ G  + S  +K  + +      Y 
Sbjct: 433 -NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YV 487

Query: 488 C--IIDLLCQAGQLGKAIDI 505
           C  +ID+  + G+L  A DI
Sbjct: 488 CSVLIDMYAKLGKLDTAWDI 507



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGS 366
           R  +A I+V IS      F E  ++  +      IRP   TL  +L         ++ G 
Sbjct: 11  RASFAAISVYISE--DESFQEKRIDSVE---NRGIRPNHQTLKWLLEGCLKTNGSLDEGR 65

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + HS  +K G DSN  ++  L + Y   G +  + ++F ++ +R + +WN ++  L    
Sbjct: 66  KLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRN 125

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
              E   +F  ++ E + P+  T + VL AC  G
Sbjct: 126 LIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 159


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/604 (30%), Positives = 326/604 (53%), Gaps = 37/604 (6%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F S +  + +H H+ KLG+++   + N  LD Y                           
Sbjct: 211 FDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYC-------------------------- 244

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                K+ +L  A ++F++IPE D V++N++++GY+  G++  A+ +F KMQ  G RP+ 
Sbjct: 245 -----KTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299

Query: 148 FTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTF+ +L+    +     G+Q+HG +++    + NV + N+L+D Y K   +  A  +F 
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVVKCNF-VWNVFVANALLDFYSKHDRVVEASKLFY 358

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M E+D IS+N L++    +G  + +L+ F  ++++G+    +  + +++      NLD 
Sbjct: 359 EMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDI 418

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+Q+ + ++    +S  +V ++ +D+++KC    ++ R+F  L          MIS+Y +
Sbjct: 419 GRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQ 478

Query: 325 YGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  E  L+LF  M R  I     T  S V +   +  +  G Q HS  I SG+ SN   
Sbjct: 479 KGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFS 538

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L++MYAK GSI  + ++F ++  R+ VSWN ++    QNG    TL +FEE++  GL
Sbjct: 539 GSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGL 598

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD ++L ++L AC++ G V++G+  F +M   Y ++P +EHYA  ID+LC+ G+  +A 
Sbjct: 599 QPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAE 658

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMR 562
            + + MPF+P   +W S+L +  I+ + +L +  A ++ +++ L    PY  ++  YA  
Sbjct: 659 KLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAA 718

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G W+ + +VKK MR+ G+ KV   SW+ IK++ + F A +  H   ++I   L  L  +M
Sbjct: 719 GEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKM 778

Query: 623 EDEG 626
             +G
Sbjct: 779 VKKG 782



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 151/524 (28%), Positives = 260/524 (49%), Gaps = 8/524 (1%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +   + K GFN +TY  N  +  + + G  +   +LFDE+P KN  S N  + G +KS N
Sbjct: 88  VDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGN 147

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A  +FD + +   V+W  +I GYA       A  +F +M   G+ P   + + LLS 
Sbjct: 148 LSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSG 207

Query: 157 VS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +   S    +Q+H  +I+ G   S +V+ NSL+D Y K   L  AF +F ++ E D ++
Sbjct: 208 FTEFDSVNEVRQVHSHVIKLGYD-STLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N+L++G    G+   A++ F+ M+  GY P E+T + ++ A  +L +++ G+QV    V
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F+ N  V +A +D +SK +R+ ++ +LF ++   D    NV+++ Y   G  + +LE
Sbjct: 327 KCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLE 386

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF+ +         F  + +LS   I   ++ G Q HS  I +   S  +V +SL++MYA
Sbjct: 387 LFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYA 446

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G    +  IF  L  +  V W  ++    Q G   + L +F E+    +  D  T A+
Sbjct: 447 KCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYAS 506

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           ++ AC     +  G  + S +    G +      + ++D+  + G +  A+ +   MP +
Sbjct: 507 IVRACASLASLTLGKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVR 565

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
              S W +++ A A  GD   T  + E M+   L  P   SLL+
Sbjct: 566 NSVS-WNALISAYAQNGDGDCTLRLFEEMVRSGL-QPDSVSLLS 607



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 43/273 (15%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A +   + +Y S ++  C S  S    K +H H+   G+ ++ + G+  +D+Y++ G
Sbjct: 492 MQRAKIGADAATYAS-IVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCG 550

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMIS 120
           +  D LQ+F E+P +N +SWN  +    ++ + D  L++F+E+     +PD VS  S++ 
Sbjct: 551 SIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILC 610

Query: 121 GYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
             + CG  +  L+ F  M ++  + P                  K+ H +          
Sbjct: 611 ACSHCGLVEEGLQYFDSMTRIYKLVP------------------KKEHYA---------- 642

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFY 235
                S IDM  + G    A  +   M  E D I W+S+++ C    N    + A +Q +
Sbjct: 643 -----STIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLF 697

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           +M+    +    T+S +  A  +  N+ K K+ 
Sbjct: 698 NMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKA 730


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/675 (28%), Positives = 341/675 (50%), Gaps = 75/675 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY------------------ 60
           S ++  C   + F   + IH  ++K GF + T++GN  + LY                  
Sbjct: 147 SSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLY 206

Query: 61  -------------SRFGTSDDVLQLFDEI------PQ----------------------- 78
                        ++ G  D  L +FDE+      P                        
Sbjct: 207 CDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266

Query: 79  -----KNCISWNICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                K  +S +  + G L     KS +++ AL++FD     +VV WN M+  Y      
Sbjct: 267 HSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDL 326

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
             + ++F +M   GVRP+ FT+  +L T +       G+QIH   I++G   S++ +   
Sbjct: 327 AKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQ-SDMYVSGV 385

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K G L  A  +   +EE D++SW S+I+G     + + AL+ F  M+  G  PD
Sbjct: 386 LIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPD 445

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
              ++  I+AC  ++ + +G Q+ A     G+ ++  + +  + L+++C   +++   FE
Sbjct: 446 NIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFE 505

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEH 364
            ++  +    N +IS + + G  E AL++F  M +   +   FT +S + +S  +  ++ 
Sbjct: 506 AIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQ 565

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK+G+ S   ++++L+ +Y K GSI+ +   F ++ KR+ VSWNTI+   +Q
Sbjct: 566 GKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQ 625

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +GR  E LD+F+++ ++GL P  +T   VL AC++ G V++G+  F +M  E+G+ P  +
Sbjct: 626 HGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPD 685

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC++D+L +AGQL +A      MP      +W ++L A  ++ ++++ E  A+ +++L
Sbjct: 686 HYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLEL 745

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+ AYA+ G+W +  +++K+M+  G+ K  G SWI +KN ++ F  G+  
Sbjct: 746 EPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRL 805

Query: 605 HHGGQKIYLVLRLLT 619
           H    +IY  L  L 
Sbjct: 806 HPLADQIYNFLSHLN 820



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 231/439 (52%), Gaps = 44/439 (10%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S + +     IH      G + +  +GN  +DLY++                        
Sbjct: 54  SGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAK------------------------ 89

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
             +G ++      A +VF+E+   D VSW +++SGYA  G  + A+ ++ +M   GV P+
Sbjct: 90  --KGFVRR-----ARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPT 142

Query: 147 GFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
            +    +LS++ SAC        G+ IH  + + G   S   +GN+LI +Y +      A
Sbjct: 143 PY----VLSSILSACTKTELFQLGRLIHVQVYKQGF-FSETFVGNALISLYLRCRSFRLA 197

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF +M   D +++N+LISG    G+G+ AL  F  M+ SG SPD  TI+ ++ AC+ +
Sbjct: 198 DRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAV 257

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +L KGKQ+ +  +K G   + I+  + +DL+ K   +E+++++F+  DR +  + N+M+
Sbjct: 258 GDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLML 317

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
             YG+      + ++F  ML   +RP +FT  C+L +      +  G Q HS+ IK+GF 
Sbjct: 318 VAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQ 377

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+  V+  L++MY+K G +D +  I   ++++D+VSW +++ G  Q+    E L+ F+E+
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEM 437

Query: 439 LEEGLPPDRITLAAVLLAC 457
              G+ PD I LA+ + AC
Sbjct: 438 QACGIWPDNIGLASAISAC 456



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 194/403 (48%), Gaps = 15/403 (3%)

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK------- 164
             S+N  ++G+ +    +  L +F+    Q +      F+  L     AC G        
Sbjct: 6   AASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALR----ACRGSGRRWPLV 61

Query: 165 -QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
            +IH   I  GLS   ++ GN LID+Y K G +  A  VF  +   D +SW +++SG   
Sbjct: 62  PEIHAKAIICGLSGYRII-GNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +G GE A+  +  M  SG  P  Y +S +++ACTK      G+ +     K GF S + V
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFV 180

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +A I L+ +C     + R+F  +   D    N +IS + + G G+ AL +F  M    +
Sbjct: 181 GNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGL 240

Query: 344 RPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P   T++ +L++   +  +  G Q HS  +K+G   + ++  SL+++Y K+G I+ + +
Sbjct: 241 SPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQ 300

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           IF   D+ ++V WN +++   Q    A++ D+F  +L  G+ P++ T   +L  C + G 
Sbjct: 301 IFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGE 360

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           +  G  + S +  + G          +ID+  + G L KA  I
Sbjct: 361 IGLGEQIHS-LTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRI 402


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/599 (30%), Positives = 315/599 (52%), Gaps = 36/599 (6%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + +H +  KLGF ++  +    L+LY+                               K
Sbjct: 408 GQQLHAYTTKLGFASNNKIEGALLNLYA-------------------------------K 436

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
             +++TAL  F E    +VV WN M+  Y        +  +F +MQ++ + P+ +T+  +
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496

Query: 154 LST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L T   +     G+QIH  +I++   L N  + + LIDMY KLG L  A+ + +     D
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKD 555

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SW ++I+G     + + AL  F  M   G   DE  ++  ++AC  L+ L +G+Q+ A
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            +   GF S+    +A + L+S+C ++E+S   FEQ +  D    N ++S + + G  E 
Sbjct: 616 QACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEE 675

Query: 331 ALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           AL +F  M RE I    FT  S V ++     ++ G Q H++  K+G+DS   V ++L+ 
Sbjct: 676 ALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALIS 735

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK GSI  + + F+++  ++ VSWN I+   +++G  +E LD F++++   + P+ +T
Sbjct: 736 MYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVT 795

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           L  VL AC++ G VDKG+  F +M  EYG+ P  EHY C++D+L +AG L +A +    M
Sbjct: 796 LVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEM 855

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +P   +W ++L A  ++ ++++ E  A  +++L+      Y LL+  YA+  +W+A  
Sbjct: 856 PIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARD 915

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             ++ M++ G+ K  G SWI +KN I++F  G+  H    +I+   + LT    + G V
Sbjct: 916 LTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 225/432 (52%), Gaps = 36/432 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +FD  + IH  +   G    T + N  +DLYSR G                         
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGF------------------------ 237

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  +D A +VFD +   D  SW +MISG +       A+ +F  M + G+ P+ + 
Sbjct: 238 -------VDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYA 290

Query: 150 FSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +LS    + S   G+Q+HG +++ G S S+  + N+L+ +Y  LG L  A  +F NM
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFS-SDTYVCNALVSLYFHLGNLISAEHIFSNM 349

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D +++N+LI+G    GYGE A++ F  M   G  PD  T++ ++ AC+    L +G+
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A + K+GF SN+ +  A ++L++KC  +E ++  F + +  +  + NVM+  YG   
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               +  +F+ M  E+I P ++T   +L + I +  +E G Q HS  IK+ F  NA V S
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK G +D++ +I ++   +D+VSW T++ G TQ     + L  F ++L+ G+  
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589

Query: 446 DRITLAAVLLAC 457
           D + L   + AC
Sbjct: 590 DEVGLTNAVSAC 601



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/520 (24%), Positives = 241/520 (46%), Gaps = 48/520 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +S +  + +HG + KLGF++ TY+ N  + LY   G       +F  + Q
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 351

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +++N                               ++I+G + CGY + A+E+F +M
Sbjct: 352 RDAVTYN-------------------------------TLINGLSQCGYGEKAMELFKRM 380

Query: 139 QLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L G+ P   T + L+   S   +   G+Q+H    + G + +N + G +L+++Y K   
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG-ALLNLYAKCAD 439

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL-----ALDQFYSMRYSGYSPDEYTIS 250
           +  A   FL  E  +++ WN ++       YG L     +   F  M+     P++YT  
Sbjct: 440 IETALDYFLETEVENVVLWNVML-----VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 494

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++  C +L +L+ G+Q+ +  +K  F  N+ V S  ID+++K  +L+ +  +  +    
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D      MI+ Y +Y F + AL  F+ ML   IR  E  L+  +S+   +  ++ G Q H
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           + A  SGF S+    ++L+ +Y++ G I+ S   F + +  D ++WN ++ G  Q+G   
Sbjct: 615 AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNE 674

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L VF  +  EG+  +  T  + + A +    + +G  V + + +  G     E    +
Sbjct: 675 EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAL 733

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           I +  + G +  A      +  +   S W +I+ A + +G
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINAYSKHG 772



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 236/499 (47%), Gaps = 55/499 (11%)

Query: 21  LIDRCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L++ CL    S D  + +H  + KLG +++  L  +  D Y                   
Sbjct: 90  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY------------------- 130

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                      L K D L  A KVFDE+PE  + +WN MI   AS         +F +M 
Sbjct: 131 -----------LFKGD-LYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMV 178

Query: 140 LQGVRPSGFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            + V P+  TFS +L     AC G        +QIH  ++  GL  S VV  N LID+Y 
Sbjct: 179 SENVTPNEGTFSGVLE----ACRGGSVAFDVVEQIHARILYQGLRDSTVVC-NPLIDLYS 233

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G +  A  VF  +   D  SW ++ISG   +     A+  F  M   G  P  Y  S 
Sbjct: 234 RNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 293

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++AC K+ +L+ G+Q+  L +K+GF S++ V +A + L+     L  +  +F  + + D
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHS 370
               N +I+   + G+GE A+ELF+ M  + + P   TL S V++      +  G Q H+
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM--GLTQNGRA 428
              K GF SN  +  +L+ +YAK   I+++ + F++ +  ++V WN +++  GL  + R 
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR- 472

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
             +  +F ++  E + P++ T  ++L  C   G ++ G  + S + +    +     Y C
Sbjct: 473 -NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA---YVC 528

Query: 489 --IIDLLCQAGQLGKAIDI 505
             +ID+  + G+L  A DI
Sbjct: 529 SVLIDMYAKLGKLDTAWDI 547



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           +  +  C   ++    + IH      GF++     N  + LYSR G  ++    F++   
Sbjct: 595 TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEA 654

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+WN  + G  +S N + AL+V                               F +M
Sbjct: 655 GDNIAWNALVSGFQQSGNNEEALRV-------------------------------FVRM 683

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G+  + FTF   +   S   +   GKQ+H  + ++G   S   + N+LI MY K G 
Sbjct: 684 NREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD-SETEVCNALISMYAKCGS 742

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   FL +   + +SWN++I+     G+G  ALD F  M +S   P+  T+  V++A
Sbjct: 743 ISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSA 802

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+ +  +DKG   F +++ + G           +D+ ++   L  +    +++
Sbjct: 803 CSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEM 855



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGS 366
           R  +A I+V IS      F E  ++  +      IRP   TL  +L         ++ G 
Sbjct: 51  RASFAAISVYISE--DESFQEKRIDSVE---NRGIRPNHQTLKWLLEGCLKTNGSLDEGR 105

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + HS  +K G DSN  ++  L + Y   G +  + ++F ++ +R + +WN ++  L    
Sbjct: 106 KLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRN 165

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
              E   +F  ++ E + P+  T + VL AC  G
Sbjct: 166 LIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/614 (31%), Positives = 319/614 (51%), Gaps = 38/614 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C S       + +H H+ K  F AH    N  + +Y+                   
Sbjct: 170 IIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYT------------------- 210

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       KS+ +  AL VF  +   D++SW SMI+G++  GY   AL  F +M  
Sbjct: 211 ------------KSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLH 258

Query: 141 QGVR-PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           QGV  P+ F F  + S  SS     +G+Q+HG  I+ GL   +V  G SL DMY K G+L
Sbjct: 259 QGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLG-RDVFAGCSLCDMYAKCGLL 317

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  +   D+++WN++I+G    G  + A+  F  MR+ G  PDE T+  ++ AC
Sbjct: 318 SCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCAC 377

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVI 315
           T    L +G QV     K+G   +  V +  + +++KC+ L D++  FE++    D    
Sbjct: 378 TSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSW 437

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIK 374
           N +++   R+   E    L +LM     RP   TL+ VL +S     +E G+Q H  A+K
Sbjct: 438 NAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALK 497

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G + +  V + L+++YAK GS+ ++ +IF  +   D+VSW+++++G  Q G   E L +
Sbjct: 498 TGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKL 557

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+ +    + P+ +T   VL AC++ G V++G  ++  M++E+G+ P  EH +C++DLL 
Sbjct: 558 FKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLA 617

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A      M F P   +W+++L A   +G+V + +  AE ++ +   +   + L
Sbjct: 618 RAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVL 677

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA +G WE + R++ +M++ G+ KV G SWI +K+RI+ F   +  H    KIY +
Sbjct: 678 LCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIYTM 737

Query: 615 LRLLTWEMEDEGCV 628
           L  L  +M D G V
Sbjct: 738 LEELLLQMLDAGYV 751



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 239/527 (45%), Gaps = 50/527 (9%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +LS  + LI  C   +S +  K IH H+ K   +    L N  L++Y             
Sbjct: 62  TLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYG------------ 109

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                              K  +L  A KVFD +PE +VVSW S+I+GY+  G    ALE
Sbjct: 110 -------------------KCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
            + +M   GV P  FTF  ++   SS      G+Q+H  +++S    ++++  N+LI MY
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFG-AHIIAQNALISMY 209

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTI 249
            K  ++  A  VF  M   D+ISW S+I+G    GY   AL  F  M + G Y P+E+  
Sbjct: 210 TKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIF 269

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             V +AC+ L   + G+Q+  +S+K G   +     +  D+++KC  L  +  +F Q+ R
Sbjct: 270 GSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
            D    N +I+ +   G  + A+  F  M  + + P E T+  +L +   P  +  G Q 
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGR 427
           H    K G D +  V ++L+ MYAK   +  +   F ++    DLVSWN I+    ++ +
Sbjct: 390 HGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQ 449

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF-----SAMKEEYGVMPG 482
           A E   + + +      PD ITL  VL A      ++ G  V      + +  +  V  G
Sbjct: 450 AEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNG 509

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                 +IDL  + G L  A  I  +M   P    W S++   A +G
Sbjct: 510 ------LIDLYAKCGSLKTAHKIFDSM-INPDVVSWSSLILGYAQFG 549


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/614 (30%), Positives = 321/614 (52%), Gaps = 48/614 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC+   S   AK +HGH+ K G     ++    +++Y R G S D            
Sbjct: 84  LLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQD------------ 131

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A  +FDE+PE +VV+W ++I+GY        ALE+F +M  
Sbjct: 132 -------------------ARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLK 172

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T   +LS   ++ +   GKQ+HG  I+ G + S   +GNSL  +Y K G L 
Sbjct: 173 LGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAA-SITSIGNSLCRLYTKSGNLE 231

Query: 198 YAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
                F  + + ++I+W ++IS C  +  Y EL L+ F  M      P+E+T++ V++ C
Sbjct: 232 SGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLC 291

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +++ GKQV     K+G  +N  V ++T+ L+ +    E+++RLFE+++       N
Sbjct: 292 GTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWN 351

Query: 317 VMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            MIS + +              G  AL++F+ ++R  ++P  FT S +LS    +  +E 
Sbjct: 352 AMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQ 411

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK+GF S+ VV S+L+ MY K G I+ +T+ FV++  R LV+W +++ G +Q
Sbjct: 412 GEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQ 471

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +GR  + + +FE+++  G  P+ IT  ++L AC+Y G V++ M  F  M+ EY + P  +
Sbjct: 472 HGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMD 531

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C+ID+  + G+L  A        F+P  +IW S++     +G+++L    A+R+++L
Sbjct: 532 HYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLEL 591

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL   Y   GRW  + RV+K+ +   +  +   SWI I++++Y F A +  
Sbjct: 592 KPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLGILRDRSWITIRDKVYFFKADDRS 651

Query: 605 HHGGQKIYLVLRLL 618
           H    ++Y +L  L
Sbjct: 652 HPQSTELYQLLETL 665



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 138/286 (48%), Gaps = 25/286 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +    +  K + G  FK+G   +  + N  + LY R G +++ ++LF+E+  
Sbjct: 285 TSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMED 344

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+WN  + G             F +I +      ++   G+        AL++F  +
Sbjct: 345 NSVITWNAMISG-------------FAQIMDSAKDDLHARSRGFQ-------ALKIFRDL 384

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               ++P  FTFS +LS  S+      G+QIH   I++G  LS+VV+ ++L++MY K G 
Sbjct: 385 VRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGF-LSDVVVNSALVNMYNKCGC 443

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           + YA   F+ M    +++W S+ISG    G    A+  F  M  +G  P+E T   +++A
Sbjct: 444 IEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSA 503

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDS 300
           C+    +++  + F +      +   +      ID+F +  RL+D+
Sbjct: 504 CSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDA 549



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 40/230 (17%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C +  + +  + IH    K GF +   + +  +++Y++ G  +   +
Sbjct: 390 KPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATK 449

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+P +  ++W                                SMISGY+  G    A
Sbjct: 450 AFVEMPTRTLVTW-------------------------------TSMISGYSQHGRPHDA 478

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLG-NSLID 188
           +++F  M L G +P+  TF  LLS  S A        +  M+++   +  ++     +ID
Sbjct: 479 IQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMID 538

Query: 189 MYGKLGVL--YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS 236
           M+ +LG L   YAF      E  + I W+SL++GC + G  ELA   FY+
Sbjct: 539 MFVRLGRLDDAYAFIKRKGFEPNEAI-WSSLVAGCRSHGNMELA---FYA 584


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/614 (29%), Positives = 320/614 (52%), Gaps = 36/614 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C S  +    + +H +  KLGF ++  +    L+LY+                 
Sbjct: 376 ASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYA----------------- 418

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K  +++TAL  F E    +VV WN M+  Y        +  +F +M
Sbjct: 419 --------------KCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 464

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q++ + P+ +T+  +L T   +     G+QIH  +I++   L N  + + LIDMY KLG 
Sbjct: 465 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQL-NAYVCSVLIDMYAKLGK 523

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A+ + +     D++SW ++I+G     + + AL  F  M   G   DE  ++  ++A
Sbjct: 524 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 583

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L+ L +G+Q+ A +   GF S+    +A + L+SKC  +E++   FEQ +  D    
Sbjct: 584 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAW 643

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIK 374
           N ++S + + G  E AL +F  M RE I    FT  S V ++     ++ G Q H++  K
Sbjct: 644 NALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITK 703

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G+DS   V ++++ MYAK GSI  + + F++L  ++ VSWN ++   +++G  +E LD 
Sbjct: 704 TGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDS 763

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F++++   + P+ +TL  VL AC++ G VDKG+  F +M  EYG+ P  EHY C++D+L 
Sbjct: 764 FDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLT 823

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A D    MP +P   +W ++L A  ++ ++++ E  A  +++L+      Y L
Sbjct: 824 RAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 883

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA+  +W+A    ++ M++ G+ K  G SWI +KN I++F  G+  H    +I+  
Sbjct: 884 LSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEY 943

Query: 615 LRLLTWEMEDEGCV 628
            + LT    + G V
Sbjct: 944 FKDLTKRASEIGYV 957



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 167/606 (27%), Positives = 286/606 (47%), Gaps = 85/606 (14%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +FD  + IH  +   G    T + N  +DLYSR G                         
Sbjct: 185 AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGF------------------------ 220

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  +D A +VFD +   D  SW +MISG +       A+ +F  M + G+ P+ + 
Sbjct: 221 -------VDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYA 273

Query: 150 FSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +LS    + S   G+Q+HG +++ G S S+  + N+L+ +Y  LG L  A  +F NM
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFS-SDTYVCNALVSLYFHLGSLISAEHIFSNM 332

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D +++N+LI+G    GYGE A++ F  M+  G  PD  T++ ++ AC+    L  G+
Sbjct: 333 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQ 392

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A + K+GF SN  +  A ++L++KC+ +E ++  F + +  +  + NVM+  YG   
Sbjct: 393 QLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLD 452

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               +  +F+ M  E+I P ++T   +L + I +  +E G Q HS  IK+ F  NA V S
Sbjct: 453 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCS 512

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK G +D++ +I ++   +D+VSW T++ G TQ     + L  F ++L+ G+  
Sbjct: 513 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 572

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D + L   + AC        G+    A+KE      G++ +A      C +G        
Sbjct: 573 DEVGLTNAVSAC-------AGL---QALKE------GQQIHA----QACVSG-------F 605

Query: 506 TSTMPFQPGC----SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           +S +PFQ       S   +I  A   +   +  +N+A             ++ L   +  
Sbjct: 606 SSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA-------------WNALVSGFQQ 652

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G  E  +RV   M + GI+         +K    T N  +     G++++ V+    ++
Sbjct: 653 SGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQ-----GKQVHAVITKTGYD 707

Query: 622 MEDEGC 627
            E E C
Sbjct: 708 SETEVC 713



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 239/499 (47%), Gaps = 55/499 (11%)

Query: 21  LIDRCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L++ CL    S D  + +H  + KLGF+ +  L  + LD Y                   
Sbjct: 73  LLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFY------------------- 113

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                      L K D LD ALKVFDE+PE  + +WN MI   AS   S     +F +M 
Sbjct: 114 -----------LFKGD-LDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMV 161

Query: 140 LQGVRPSGFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            + V P+  TFS +L     AC G        +QIH  +I  GL  S +V  N LID+Y 
Sbjct: 162 NENVTPNEGTFSGVLE----ACRGGSVAFDVVEQIHARIIYQGLGKSTIVC-NPLIDLYS 216

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G +  A  VF  +   D  SW ++ISG   +     A+  F  M   G  P  Y  S 
Sbjct: 217 RNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSS 276

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++AC K+ +L+ G+Q+  L +K+GF S++ V +A + L+     L  +  +F  + + D
Sbjct: 277 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRD 336

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHS 370
               N +I+   + G+GE A+ELF+ M  + + P   TL S V++      +  G Q H+
Sbjct: 337 AVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHA 396

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM--GLTQNGRA 428
              K GF SN  +  +L+ +YAK   I+++   F++ +  ++V WN +++  GL  + R 
Sbjct: 397 YTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLR- 455

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
             +  +F ++  E + P++ T  ++L  C   G ++ G  + S + +    +     Y C
Sbjct: 456 -NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA---YVC 511

Query: 489 --IIDLLCQAGQLGKAIDI 505
             +ID+  + G+L  A DI
Sbjct: 512 SVLIDMYAKLGKLDTAWDI 530



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 243/520 (46%), Gaps = 48/520 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +S +  + +HG + KLGF++ TY+ N  + LY   G+      +F  + Q
Sbjct: 275 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ 334

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +++N                               ++I+G + CGY + A+E+F +M
Sbjct: 335 RDAVTYN-------------------------------TLINGLSQCGYGEKAMELFKRM 363

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           QL G+ P   T + L+   SS      G+Q+H    + G + SN  +  +L+++Y K   
Sbjct: 364 QLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFA-SNDKIEGALLNLYAKCSD 422

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL-----ALDQFYSMRYSGYSPDEYTIS 250
           +  A   FL  E  +++ WN ++       YG L     +   F  M+     P++YT  
Sbjct: 423 IETALNYFLETEVENVVLWNVML-----VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 477

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++  C +L +L+ G+Q+ +  +K  F  N+ V S  ID+++K  +L+ +  +  +    
Sbjct: 478 SILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 537

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D      MI+ Y +Y F + AL  F+ ML   IR  E  L+  +S+   +  ++ G Q H
Sbjct: 538 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 597

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           + A  SGF S+    ++L+ +Y+K G+I+ +   F + +  D ++WN ++ G  Q+G   
Sbjct: 598 AQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNE 657

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L VF  +  EG+  +  T  + + A +    + +G  V + + +  G     E    I
Sbjct: 658 EALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAI 716

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           I +  + G +  A      +  +   S W +++ A + +G
Sbjct: 717 ISMYAKCGSISDAKKQFLELSMKNEVS-WNAMINAYSKHG 755


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 215/659 (32%), Positives = 327/659 (49%), Gaps = 90/659 (13%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    S    ++ H      GF ++ ++GN  + +YSR                  C S 
Sbjct: 137 CGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSR------------------CRS- 177

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GV 143
                       L  A KVFDE+   DVVSWNS+I  YA  G    ALEMFS+M  + G 
Sbjct: 178 ------------LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGC 225

Query: 144 RPSGFTF-SILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           RP   T  ++L    S   H  GKQ+H   + S + + N+ +GN L+DMY K G++  A 
Sbjct: 226 RPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEM-IQNMFVGNCLVDMYAKCGMMDEAN 284

Query: 201 GVFLNMEELDIISWNSL-----------------------------------ISGCFNSG 225
            VF NM   D++SWN++                                   ISG    G
Sbjct: 285 TVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRG 344

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV-------GFL 278
            G  AL     M  SG  P+E T+  V++ C  +  L  GK++   ++K        G  
Sbjct: 345 LGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHG 404

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQ 336
             ++V++  ID+++KC +++ +  +F+ L   +  V+   VMI  Y ++G    ALEL  
Sbjct: 405 DENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 337 LMLRED--IRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAV---VASSLMEM 390
            M  ED   RP  FT+SC L +   +  +  G Q H+ A+++    NAV   V++ L++M
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRN--QQNAVPLFVSNCLIDM 522

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK GSI  +  +F  +  ++ V+W ++M G   +G   E L +F+E+   G   D +TL
Sbjct: 523 YAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTL 582

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             VL AC++ G +D+GM  F+ MK  +GV PG EHYAC++DLL +AG+L  A+ +   MP
Sbjct: 583 LVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP 642

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P   +W + L    I+G V+L E  AE++ +L       Y+LL+  YA  GRW+ + R
Sbjct: 643 MEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTR 702

Query: 571 VKKVMRKNGINKVTGCSWI-GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           ++ +MR  G+ K  GCSW+ GIK    TF  G+  H   ++IY VL      ++D G V
Sbjct: 703 IRSLMRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYV 760



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 220/487 (45%), Gaps = 57/487 (11%)

Query: 97  LDTALKVFDEIPEPD--VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           L  A+ +    P  D  V  WNS+I  Y   G ++  L +F  M      P  +TF  + 
Sbjct: 75  LSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVF 134

Query: 155 ST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                +SS   G+  H   + +G  +SNV +GN+L+ MY +   L  A  VF  M   D+
Sbjct: 135 KACGEISSVRCGESAHALSLVTGF-ISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDV 193

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +SWNS+I      G  ++AL+ F  M    G  PD  T+  V+  C  L     GKQ+  
Sbjct: 194 VSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHC 253

Query: 271 LSVKVGFLSNSIVLSATIDLFSKC-------------------------------NRLED 299
            +V    + N  V +  +D+++KC                                R ED
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFED 313

Query: 300 SVRLFEQLD----RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           +VRLFE++     + D    +  IS Y + G G  AL + + ML   I+P E TL  VLS
Sbjct: 314 AVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 356 SIP-IPPVEHGSQFHSMAI-------KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
               +  + HG + H  AI       K+G     +V + L++MYAK   +D++  +F  L
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433

Query: 408 D--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP--PDRITLAAVLLACNYGGFV 463
              +RD+V+W  ++ G +Q+G A + L++  E+ EE     P+  T++  L+AC     +
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493

Query: 464 DKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             G  + + A++ +   +P      C+ID+  + G +  A  +   M  +   + W S++
Sbjct: 494 RIGKQIHAYALRNQQNAVPLFVS-NCLIDMYAKCGSISDARLVFDNMMAKNEVT-WTSLM 551

Query: 523 RASAIYG 529
               ++G
Sbjct: 552 TGYGMHG 558



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 158/313 (50%), Gaps = 21/313 (6%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD--IISWNSLISGC 221
           K IH  ++  G+   N  L + LI  Y  +G L +A  +       D  +  WNSLI   
Sbjct: 45  KLIHQKLLSFGILTLN--LTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY 102

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            ++G     L  F  M    ++PD YT   V  AC ++ ++  G+   ALS+  GF+SN 
Sbjct: 103 GDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNV 162

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A + ++S+C  L D+ ++F+++  WD    N +I +Y + G  +VALE+F  M  E
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE 222

Query: 342 -DIRPTEFTLSCVLSSIPIPPVEH------GSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
              RP   TL  VL     PP         G Q H  A+ S    N  V + L++MYAK 
Sbjct: 223 FGCRPDNITLVNVL-----PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +D +  +F  +  +D+VSWN ++ G +Q GR  + + +FE++ EE +  D +T +A +
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337

Query: 455 LACNYGGFVDKGM 467
                 G+  +G+
Sbjct: 338 -----SGYAQRGL 345


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 187/578 (32%), Positives = 313/578 (54%), Gaps = 37/578 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+      + +++H  + K G      L +  +++YSR                  C+S 
Sbjct: 262 CMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSR------------------CLS- 302

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                        + A +VF  I EPDVV  ++MIS +     +  AL++F KM   GV+
Sbjct: 303 ------------AEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVK 350

Query: 145 PSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ + F   + + S    A   + +H  +++SG ++   V G+++++MY K+G +  A  
Sbjct: 351 PNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGV-GDAILNMYVKVGAVQDATV 409

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            F  + E D  SWN+++S  ++    E  L  F  M   G+S ++YT   V+  CT L N
Sbjct: 410 TFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMN 469

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G QV A  +K G  +++ V    +D++++      +  +FEQL   D     V++S 
Sbjct: 470 LRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSG 529

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y +    E  +E F+ MLRE+IRP++ TL+  LS    +  +  G Q HS AIKSG++S 
Sbjct: 530 YAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNS- 588

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           +VV+ +L++MY K G+I  +  +F + + RD V+WNTI+ G +Q+G   + LD F+++++
Sbjct: 589 SVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVD 648

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           EG  PD IT   VL AC++ G +++G   F ++   YG+ P  EHYAC++D+L +AG+L 
Sbjct: 649 EGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLV 708

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A  + + MP  P  SIW +IL A  I+ ++++ E  AER+ +L+        LL+  YA
Sbjct: 709 EAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYA 768

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
             GRW  + RV+ ++  +G+ K  GCSWI I  +I+ F
Sbjct: 769 DLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMF 806



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 205/438 (46%), Gaps = 36/438 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   ++    + +H  L +   +  T+L +  L++Y + G      +L D          
Sbjct: 60  CAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCG------RLVD---------- 103

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                          A +VFD +P  D+V+W +MIS + + G SD AL+MF++M  +G+ 
Sbjct: 104 ---------------ARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIA 148

Query: 145 PSGFTFSILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+GFT + +L   S   H K   Q+HG +++    L +  +G+SL++ Y   G L  A  
Sbjct: 149 PNGFTLASVLKACSGGSHSKFTHQVHGQVVKLN-GLDDPYVGSSLVEAYTSCGELDAAET 207

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           V L + E   +SWN+L++G    G     +     +  SG    +YT+  V+  C +L  
Sbjct: 208 VLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGL 267

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G+ V A  +K G  +++++ S  ++++S+C   E++  +F ++D  D    + MIS 
Sbjct: 268 AKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISC 327

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSN 380
           + R+     AL+LF  M    ++P  +    +   +            H+  +KSGF   
Sbjct: 328 FDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAML 387

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V  +++ MY K G++  +T  F  + + D  SWNTI+          + L +F+++  
Sbjct: 388 KGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMAC 447

Query: 441 EGLPPDRITLAAVLLACN 458
           EG   ++ T  +VL  C 
Sbjct: 448 EGFSANKYTYVSVLRCCT 465



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 181/364 (49%), Gaps = 6/364 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  ++RS L     +L +SL++MY K G L  A  VF  M   DI++W ++IS   
Sbjct: 69  GQELHARLLRSALHPDTFLL-DSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHT 127

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G  + ALD F  M   G +P+ +T++ V+ AC+   +     QV    VK+  L +  
Sbjct: 128 AAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPY 187

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ ++ ++ C  L+ +  +   L        N +++ Y R+G     + + + ++   
Sbjct: 188 VGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASG 247

Query: 343 IRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
              +++TL  VL   + +   ++G   H+  IK G +++ V+ S L+EMY++  S + + 
Sbjct: 248 DEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAY 307

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F+++D+ D+V  + ++    ++  A E LD+F ++   G+ P+      +    +  G
Sbjct: 308 EVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTG 367

Query: 462 FVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             +    V +  +K  + ++ G      I+++  + G +  A  +T  +  +P    W +
Sbjct: 368 DANLCRSVHAYIVKSGFAMLKGVGD--AILNMYVKVGAVQDAT-VTFDLIHEPDTFSWNT 424

Query: 521 ILRA 524
           IL A
Sbjct: 425 ILSA 428



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 3/220 (1%)

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C   R L +G+++ A  ++     ++ +L + ++++ KC RL D+ R+F+ +   D    
Sbjct: 60  CAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAW 119

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MIS +   G  + AL++F  M +E I P  FTL+ VL +       +   Q H   +K
Sbjct: 120 TAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVK 179

Query: 375 -SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
            +G D +  V SSL+E Y   G +D++  + + L +R  VSWN ++ G  ++G     + 
Sbjct: 180 LNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMI 238

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           + E+L+  G    + TL  VL  C   G    G  V +++
Sbjct: 239 IIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASV 278



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 90/183 (49%), Gaps = 6/183 (3%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +  G + H+  ++S    +  +  SL+ MY K G +  +  +F  +  RD+V+W  ++  
Sbjct: 66  LRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISA 125

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
            T  G + + LD+F  + +EG+ P+  TLA+VL AC+ G        V   + +  G+  
Sbjct: 126 HTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGL-- 183

Query: 482 GEEHY--ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            ++ Y  + +++     G+L  A  +   +P +   S W ++L   A +GD +    + E
Sbjct: 184 -DDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVS-WNALLNGYARHGDYRRVMIIIE 241

Query: 540 RMM 542
           +++
Sbjct: 242 KLV 244


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 319/605 (52%), Gaps = 36/605 (5%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWN 85
           +S +  +  + +HG + K+G+ ++T++G   +D YS  G                C+S  
Sbjct: 57  VSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSG----------------CVS-- 98

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
                         A +VFDEI   D+VSW  MI+ YA       ALE FS+M++ G +P
Sbjct: 99  -------------MAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKP 145

Query: 146 SGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           + FTF+ +L     + +   GK +H S++++     ++ +G  L+++Y + G    A+  
Sbjct: 146 NNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE-RDLYVGVGLLELYTRCGDNDDAWRA 204

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F +M + D+I W+ +IS    SG  E AL+ F  MR +   P+++T S V+ A   + +L
Sbjct: 205 FGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESL 264

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           D  K +   ++K G  ++  V +A +  ++KC  +E S+ LFE L   +    N +I +Y
Sbjct: 265 DLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSY 324

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G GE AL LF  MLR  ++ TE T S +L +   +  +E G Q H +  K+ +  + 
Sbjct: 325 VQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDV 384

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V ++L++MYAK GSI  +  +F  LD RD VSWN I+ G + +G   E + +F  + E 
Sbjct: 385 AVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKET 444

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
              PD +T   VL AC+  G +D+G   F++MK++YG+ P  EHY C++ L+ ++G L +
Sbjct: 445 KCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQ 504

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A+     +PF+P   IW ++L A  I+ DV+L    A+R+++L+      + LL+  YA 
Sbjct: 505 AVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYAR 564

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             RW  +  V+K M++ G+ K  G SWI  +  ++ F   +  H   + I  +L  L  +
Sbjct: 565 ARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMK 624

Query: 622 MEDEG 626
               G
Sbjct: 625 TRKAG 629



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 222/434 (51%), Gaps = 13/434 (2%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS--- 159
           VFDE+PE + VS+ ++I GYA       A E+F+++  +G   + F F+ +L  + S   
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
           A  G+ +HG +++ G   SN  +G +LID Y   G +  A  VF  +   D++SW  +I+
Sbjct: 62  AELGRIVHGCVLKVGYG-SNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
               +     AL+ F  MR +G+ P+ +T + V+ AC  L+N D GK V    +K  +  
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V    ++L+++C   +D+ R F  + + D    + MIS + + G  E ALE+F  M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 340 REDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
           R  + P +FT S VL +S  I  ++     H  A+K+G  ++  V+++LM  YAK G I+
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIE 300

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            S E+F  L  R+ VSWNTI++   Q G     L +F  +L   +    +T +++L AC 
Sbjct: 301 QSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360

Query: 459 YGGFVDKGMLVFS-AMKEEYG--VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
               ++ G+ V     K  YG  V  G      +ID+  + G +  A  +   +  +   
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGN----ALIDMYAKCGSIKDARFMFDMLDLRDKV 416

Query: 516 SIWESILRASAIYG 529
           S W +I+   +++G
Sbjct: 417 S-WNAIICGYSMHG 429



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 190/387 (49%), Gaps = 37/387 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  CL  ++FD  KT+H  + K  +    Y+G   L+LY+R G +DD  + F ++P+ +
Sbjct: 153 VLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKND 212

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I W+                                MIS +A  G S+ ALE+F +M+ 
Sbjct: 213 VIPWSF-------------------------------MISRFAQSGQSEKALEIFCQMRR 241

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V P+ FTFS +L   + + S    K IHG  +++GLS ++V + N+L+  Y K G + 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLS-TDVFVSNALMACYAKCGCIE 300

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  +F  + + + +SWN++I      G GE AL  F +M        E T S ++ AC 
Sbjct: 301 QSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  L+ G QV  L+ K  +  +  V +A ID+++KC  ++D+  +F+ LD  D    N 
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNA 420

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKS 375
           +I  Y  +G G  A+++F LM     +P E T   VLS+      ++ G Q F SM    
Sbjct: 421 IICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDY 480

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTE 402
           G +      + ++ +  ++G++D + +
Sbjct: 481 GIEPCMEHYTCMVWLMGRSGNLDQAVK 507



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 36/268 (13%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V     ++ S ++      +S D +KTIHGH  K G +   ++ N  +  Y++ G
Sbjct: 239 MRRAFVIPNQFTF-SSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCG 297

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             +  ++LF+ +  +N +SW                               N++I  Y  
Sbjct: 298 CIEQSMELFEALSDRNDVSW-------------------------------NTIIVSYVQ 326

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVV 181
            G  + AL +FS M    V+ +  T+S +L   +T+++   G Q+H  +    +   +V 
Sbjct: 327 LGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVH-CLTAKTIYGQDVA 385

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +GN+LIDMY K G +  A  +F  ++  D +SWN++I G    G G  A+  F  M+ + 
Sbjct: 386 VGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETK 445

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF 269
             PDE T   V++AC+    LD+GKQ F
Sbjct: 446 CKPDELTFVGVLSACSNTGRLDEGKQYF 473


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/550 (31%), Positives = 301/550 (54%), Gaps = 5/550 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A K+FD +PE D+VSWN++I+G++  G++  ALE+  +MQ +G RP   T   
Sbjct: 194 KCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVT 253

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   +       GK IHG  IR+G +   V +  +L DMY K G +  A  +F  M++ 
Sbjct: 254 VLPAAADVGLLMVGKSIHGYAIRAGFA-KLVNISTALADMYSKCGSVETARLIFDGMDQK 312

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            ++SWNS++ G   +G  E A+  F  M   G  P   TI   ++AC  L +L++GK V 
Sbjct: 313 TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVH 372

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
               ++   S+  V+++ I ++SKC R++ +  +F  L+   +   N MI  Y + G   
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL  F  M    ++P  FT+  V+ ++  +    H    H + I+S  D N  V ++L+
Sbjct: 433 EALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALV 492

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G+I  + ++F  +  R +++WN ++ G   +G     LD+F+++ +  + P+ I
Sbjct: 493 DMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDI 552

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +V+ AC++ G VD+G+  F +MK++YG+ P  +HY  ++DLL +AG++ +A D    
Sbjct: 553 TYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIEN 612

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP  PG +++ +   A  I+ ++++ E  A+++ +L       + LL   YA   +W  +
Sbjct: 613 MPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKV 672

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             V+K M K G+ K  GCS + ++N +++F +G   H   ++IY  L  L +E++  G V
Sbjct: 673 AEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYV 732

Query: 629 YLECDKLDVE 638
                 LDVE
Sbjct: 733 PDTNLILDVE 742



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 193/368 (52%), Gaps = 5/368 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ I +     +++M+ GYA     + AL    +M+   V+P  + F+ 
Sbjct: 93  KYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTY 152

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL           GK+IHG +I +  + +NV     +++MY K   +  A+ +F  M E 
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFA-ANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER 211

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SWN++I+G   +G+ + AL+    M+  G  PD  T+  V+ A   +  L  GK + 
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIH 271

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             +++ GF     + +A  D++SKC  +E +  +F+ +D+      N M+  Y + G  E
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+ +F+ ML E I PT  T+   L +   +  +E G   H    +    S+  V +SL+
Sbjct: 332 KAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLI 391

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MY+K   +D +++IF  L+ R  VSWN +++G  QNGR +E L+ F E+   G+ PD  
Sbjct: 392 SMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSF 451

Query: 449 TLAAVLLA 456
           T+ +V+ A
Sbjct: 452 TMVSVIPA 459



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 175/321 (54%), Gaps = 4/321 (1%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-L 209
           ++LL   +S     QI   +I++GL  +  +    L+ ++ K G +  A  VF  +++ L
Sbjct: 53  AVLLELCTSMKELHQIIPLVIKNGL-YNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D + +++++ G   +   E AL     MRY    P  Y  + ++  C    +L +GK++ 
Sbjct: 112 DAL-YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +   F +N   ++  +++++KC +++D+ ++F+++   D    N +I+ + + GF +
Sbjct: 171 GQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAK 230

Query: 330 VALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            ALEL   M  E  RP   TL  VL ++  +  +  G   H  AI++GF     ++++L 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K GS++++  IF  +D++ +VSWN++M G  QNG   + + VFE++LEEG+ P  +
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 449 TLAAVLLACNYGGFVDKGMLV 469
           T+   L AC   G +++G  V
Sbjct: 351 TIMEALHACADLGDLERGKFV 371



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 202/495 (40%), Gaps = 76/495 (15%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K+IHG+  + GF     +     D+YS+ G+ +    +FD + QK  +SWN        
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWN-------- 318

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                  SM+ GY   G  + A+ +F KM  +G+ P+G T    
Sbjct: 319 -----------------------SMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEA 355

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   +       GK +H  + +  L  S++ + NSLI MY K   +  A  +F N+    
Sbjct: 356 LHACADLGDLERGKFVHKFVDQLNLG-SDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +SWN++I G   +G    AL+ F  M+  G  PD +T+  VI A  +L      K +  
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L ++     N  V +A +D++SKC  +  + +LF+ +        N MI  YG +G G  
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           AL+LF  M +  + P + T   V+S+            HS  +  G         S+ + 
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACS----------HSGLVDEGLRH----FKSMKQD 580

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y    S+D                +  ++  L + GR  E  D  E +    + P     
Sbjct: 581 YGLEPSMD---------------HYGAMVDLLGRAGRIKEAWDFIENM---PISPGITVY 622

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII-DLLCQAGQLGKAIDITSTM 509
            A   AC     ++ G     A K+ + + P E  Y  ++ ++     +  K  ++  TM
Sbjct: 623 GAXXGACKIHKNIEVGE---KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 510 PFQ-----PGCSIWE 519
             +     PGCS+ E
Sbjct: 680 EKKGLKKTPGCSVVE 694



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           + +  C      +  K +H  + +L   +   + N  + +YS+    D    +F+ +  +
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
             +SWN                                 I GYA  G    AL  FS+M+
Sbjct: 414 THVSWNAM-------------------------------ILGYAQNGRVSEALNCFSEMK 442

Query: 140 LQGVRPSGFTF-SIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G++P  FT  S++  L+ +S   H K IHG +IRS L   N+ +  +L+DMY K G +
Sbjct: 443 SLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLD-KNIFVTTALVDMYSKCGAI 501

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
           + A  +F  + +  +I+WN++I G    G G  ALD F  M+     P++ T   VI+AC
Sbjct: 502 HMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISAC 561

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +D+G + F ++    G   +     A +DL  +  R++++    E +
Sbjct: 562 SHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENM 613


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/669 (29%), Positives = 325/669 (48%), Gaps = 87/669 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           ++   C   K++   K ++ ++  +GF  ++ +    LD++ + G  D   + F+EI  K
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGY----SDYA 131
           +   WNI + G         ALK   ++     +PD V+WN++ISGYA  G     S Y 
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 132 LEM--------------------------------FSKMQLQGVRPSGFTFSILLSTVSS 159
           LEM                                F KM L+GV+P+    SI +++  S
Sbjct: 315 LEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPN----SITIASAVS 370

Query: 160 AC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK---LGVLYYAFGVFLNME-- 207
           AC       HG++IHG  I+     S++++GNSL+D Y K   + V    FG+    +  
Sbjct: 371 ACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLV 430

Query: 208 ------------------------------ELDIISWNSLISGCFNSGYGELALDQFYSM 237
                                         E DII+WN L++G    G G+ AL+ F  M
Sbjct: 431 SWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
              G  P+  TIS  + AC ++RNL  GK++    ++     ++ V SA I ++S C+ L
Sbjct: 491 HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSL 550

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           E +  +F +L   D  V N +IS   + G    AL+L + M   ++     T+   L + 
Sbjct: 551 EVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 610

Query: 358 -PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +  G + H   I+ G D+   + +SL++MY + GSI  S  IF  + +RDLVSWN
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 670

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++     +G   + +++F+     GL P+ IT   +L AC++ G +++G   F  MK E
Sbjct: 671 VMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y + P  E YAC++DLL +AGQ  + ++    MPF+P  ++W S+L A  I+ +  L E 
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 790

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            A  + +L+  S   Y L+   Y+  GRWE   +++ +M++ G+ K  GCSWI +K +++
Sbjct: 791 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 850

Query: 597 TFNAGELQH 605
           +F  G+  H
Sbjct: 851 SFVVGDTSH 859



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 147/645 (22%), Positives = 278/645 (43%), Gaps = 96/645 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++ +C    +      +H  L   G +   +LG+R L++Y + G  +D  ++FD++ +
Sbjct: 93  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 79  KNCISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSW------------------- 115
           +N  SW   +       + +  +K+F    +E   PD   +                   
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 116 -----------NSMISG-----YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
                      NS + G     +  CG  D A   F +++ + V    F ++I++S  +S
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV----FMWNIMVSGYTS 268

Query: 160 ACHGKQIHGSMIRSGLSLSNV----VLGNSLIDMYGKLGVLYYAFGVFLNMEEL-----D 210
               K+    +  S + LS V    V  N++I  Y + G    A   FL M  L     +
Sbjct: 269 KGEFKKALKCI--SDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPN 326

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SW +LI+G   +GY   AL  F  M   G  P+  TI+  ++ACT L  L  G+++  
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386

Query: 271 LSVKVGFL-SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG------ 323
             +KV  L S+ +V ++ +D ++KC  +E + R F  + + D    N M++ Y       
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446

Query: 324 -----------------------------RYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
                                        +YG G+ ALE FQ M    + P   T+S  L
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 355 SSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           ++   +  ++ G + H   +++  + +  V S+L+ MY+   S++ +  +F +L  RD+V
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            WN+I+    Q+GR+   LD+  E+    +  + +T+ + L AC+    + +G  +   +
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFI 626

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
               G+         +ID+  + G + K+  I   MP Q     W  ++    ++G    
Sbjct: 627 I-RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMD 684

Query: 534 TENVAE--RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
             N+ +  R M L+ P+ + ++ L  A +  G  E   +  K+M+
Sbjct: 685 AVNLFQXFRTMGLK-PNHITFTNLLSACSHSGLIEEGWKYFKMMK 728



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 5/216 (2%)

Query: 243 SPDEYTISI---VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           +PDE  I I   ++  C KL NL  G QV A  V  G      + S  ++++ +   +ED
Sbjct: 84  NPDE-CIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED 142

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
           + R+F+++   +      ++  Y   G  E  ++LF LM+ E +RP  F    V  +   
Sbjct: 143 ARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE 202

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +     G   +   +  GF+ N+ V  S+++M+ K G +D +   F +++ +D+  WN +
Sbjct: 203 LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIM 262

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           + G T  G   + L    ++   G+ PD++T  A++
Sbjct: 263 VSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/628 (30%), Positives = 338/628 (53%), Gaps = 37/628 (5%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++   N  S+++   ++  C S    +F   +HG +   G    + + N  L +Y++ G
Sbjct: 239 MRRTETNPNSVTFAC-VLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCG 297

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                  LFD                         A ++FD +P+ D+V+WN MISGY  
Sbjct: 298 ------HLFD-------------------------ARRLFDMMPKTDLVTWNGMISGYVQ 326

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G+ D A  +F +M    ++P   TFS  L  +S       GK+IH  +IR+G+SL +V 
Sbjct: 327 NGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSL-DVF 385

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L ++LID+Y K   +  A  +F     +DI+   ++ISG   +G    AL+ F  +    
Sbjct: 386 LKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQER 445

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              +  T++ V+ AC  L  L  GK++    +K G   +  V SA +D+++KC RL+ + 
Sbjct: 446 MRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAH 505

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           + F  +   D    N MI++  + G  E A++LF+ M     +    ++S  LS+   +P
Sbjct: 506 QTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLP 565

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            + +G + H+  ++  F S+    S+L++MY+K G++D +  +F  +++++ VSWN+I+ 
Sbjct: 566 ALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIA 625

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
               +GR  ++L++F  +L +G+ PD +T  A++ AC + G VD+G+  F  M EE G+M
Sbjct: 626 AYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIM 685

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
              EHYAC++DL  +AG+L +A  + ++MPF P   +W ++L A  ++G+V+L E  +  
Sbjct: 686 ARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRN 745

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           + DL   +   Y LL+  +A  G+WE++++++ +M++ G+ KV GCSWI + N  + F A
Sbjct: 746 LFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVA 805

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +  H    +IYL+L+ L  E+  EG V
Sbjct: 806 ADRSHPQSSQIYLLLKNLFLELRKEGYV 833



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 254/532 (47%), Gaps = 50/532 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C    S    + +H  +  +GF    ++G+  +  YS  G   D   LFD +P K 
Sbjct: 153 VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK- 211

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                         D V WN M++GY   G  D A  +F +M+ 
Sbjct: 212 ------------------------------DGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
               P+  TF+ +LS  +S      G Q+HG ++ SGL + + V  N+L+ MY K G L+
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPV-ANTLLAMYAKCGHLF 300

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M + D+++WN +ISG   +G+ + A   F+ M  +   PD  T S  +   +
Sbjct: 301 DARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLS 360

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +   L +GK++    ++ G   +  + SA ID++ KC  +E + ++F+Q    D  V   
Sbjct: 361 EGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTA 420

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y   G    ALE+F+ +L+E +R    TL+ VL +   +  +  G + H   +K+G
Sbjct: 421 MISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNG 480

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +  V S++M+MYAK G +D + + F+ +  +D V WN+++   +QNG+  E +D+F 
Sbjct: 481 HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR 540

Query: 437 ELLEEGLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           ++   G   D ++++A L AC      +YG  +   M+  +   + +         + +I
Sbjct: 541 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFA-------ESALI 593

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           D+  + G L  A  +  TM  +   S W SI+ A   +G +K + N+   M+
Sbjct: 594 DMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAAYGNHGRLKDSLNLFHGML 644



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 193/398 (48%), Gaps = 18/398 (4%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMI 171
           WN MI G+   G  D+AL  + KM   G  P  +TF  ++     ++S   G+ +H  + 
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
             G  L +V +G+SLI  Y + G ++ A  +F  M   D + WN +++G   +G  + A 
Sbjct: 175 FMGFEL-DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNAT 233

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
             F  MR +  +P+  T + V++ C     ++ G Q+  L V  G   +S V +  + ++
Sbjct: 234 GVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMY 293

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
           +KC  L D+ RLF+ + + D    N MIS Y + GF + A  LF  M+   ++P   T S
Sbjct: 294 AKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFS 353

Query: 352 CVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
             L  +     +  G + H   I++G   +  + S+L+++Y K   ++ + +IF +    
Sbjct: 354 SFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPV 413

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D+V    ++ G   NG     L++F  LL+E +  + +TLA+VL AC        G+   
Sbjct: 414 DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC-------AGLAAL 466

Query: 471 SAMKEEYGVMPGEEH------YACIIDLLCQAGQLGKA 502
           +  KE +G +    H       + I+D+  + G+L  A
Sbjct: 467 TLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 504



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 154/310 (49%), Gaps = 2/310 (0%)

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           S    G+Q H  M+ +G+   N +LG  L+ MY   G    A  +F  +       WN +
Sbjct: 60  SGLSQGRQAHAQMLVNGIGY-NGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWM 118

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I G    G  + AL  ++ M   G  PD+YT   VI AC  L ++  G+ V      +GF
Sbjct: 119 IRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGF 178

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +  V S+ I  +S+   + D+  LF+++   D  + NVM++ Y + G  + A  +F  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 338 MLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M R +  P   T +CVLS       +  GSQ H + + SG + ++ VA++L+ MYAK G 
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGH 298

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +  +  +F  + K DLV+WN ++ G  QNG   E   +F E++   + PD IT ++ L  
Sbjct: 299 LFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPL 358

Query: 457 CNYGGFVDKG 466
            + G  + +G
Sbjct: 359 LSEGATLRQG 368



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 1/207 (0%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++  CT    L +G+Q  A  +  G   N I+ +  + ++  C    D+  +F QL  W 
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS 370
               N MI  +   G  + AL  +  ML     P ++T   V+ +   +  V  G   H 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
                GF+ +  V SSL++ Y++ G I  +  +F ++  +D V WN ++ G  +NG    
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLAC 457
              VF E+      P+ +T A VL  C
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVC 258



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +  G Q H+  + +G   N ++ + L+ MY   G+   +  IF +L       WN ++ G
Sbjct: 62  LSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRG 121

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA---MKEEYG 478
            T  G+    L  + ++L  G  PD+ T   V+ AC     V  G +V      M  E  
Sbjct: 122 FTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELD 181

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           V  G      +I    + G +  A  +   MP + G  +W  +L      GD    +N  
Sbjct: 182 VFVGSS----LIKFYSENGCIHDARYLFDRMPSKDGV-LWNVMLNGYVKNGD---WDNAT 233

Query: 539 ERMMDLQLPSPLPYSL 554
              M+++     P S+
Sbjct: 234 GVFMEMRRTETNPNSV 249


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 339/660 (51%), Gaps = 90/660 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            ++  C    S+      HG +   GF ++ ++ N  + +YSR G+ ++   +FDEI Q 
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ- 218

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                    RG+                   DV+SWNS++S +     +  AL++FSKM 
Sbjct: 219 ---------RGI------------------DDVISWNSIVSAHVKSSNAWTALDLFSKMT 251

Query: 140 LQGVRPSGFTFSILLSTVS--SAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           L          S ++S V+   AC         K++HG+ IR+G +  +V +GN+LID Y
Sbjct: 252 LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAY 310

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR------------ 238
            K G++  A  VF  ME  D++SWN++++G   SG  E A + F +MR            
Sbjct: 311 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWT 370

Query: 239 -----------------------YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
                                  +SG  P+  TI  V++AC  L    +G ++ A S+K 
Sbjct: 371 AVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKN 430

Query: 276 GFLS----------NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYG 323
             L+          + +V +A ID++SKC   + +  +F+ +   +  V+   VMI  + 
Sbjct: 431 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 490

Query: 324 RYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-FDS 379
           +YG    AL+LF  M+ E   + P  +T+SC+L +   +  +  G Q H+  ++   ++S
Sbjct: 491 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYES 550

Query: 380 NA-VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +A  VA+ L++MY+K G +D++  +F  + ++  +SW ++M G   +GR +E LD+F+++
Sbjct: 551 SAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 610

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G  PD IT   VL AC++ G VD+G+  F +M  +YG+ P  EHYAC IDLL ++G+
Sbjct: 611 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGR 670

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L KA      MP +P   +W ++L A  ++ +V+L E+   +++++   +   Y+L++  
Sbjct: 671 LDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 730

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  GRW+ + R++ +M+K+GI K  GCSW+  +    +F  G+  H    +IY +L  L
Sbjct: 731 YATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 790



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 233/508 (45%), Gaps = 67/508 (13%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           D AL V + +     V WN +I  +   G  D A+ +  +M   G RP  FT   +L   
Sbjct: 106 DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 165

Query: 158 ----SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---D 210
               S  C G   HG +  +G   SNV + N+L+ MY + G L  A  +F  + +    D
Sbjct: 166 GELPSYRC-GSAFHGLICCNGFE-SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDD 223

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM------RYSGYSPDEYTISIVINACTKLRNLDK 264
           +ISWNS++S    S     ALD F  M      + +    D  +I  ++ AC  L+ + +
Sbjct: 224 VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQ 283

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            K+V   +++ G   +  V +A ID ++KC  +E++V++F  ++  D    N M++ Y +
Sbjct: 284 TKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQ 343

Query: 325 YGFGEVALELFQLMLREDIR-----------------------------------PTEFT 349
            G  E A ELF+ M +E+I                                    P   T
Sbjct: 344 SGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVT 403

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKS----------GFDSNAVVASSLMEMYAKTGSID 398
           +  VLS+   +     G++ H+ ++K+          G D + +V ++L++MY+K  S  
Sbjct: 404 IISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFK 463

Query: 399 SSTEIF--VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE--GLPPDRITLAAVL 454
           ++  IF  + L++R++V+W  ++ G  Q G + + L +F E++ E  G+ P+  T++ +L
Sbjct: 464 AARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCIL 523

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQP 513
           +AC +   +  G  + + +   +         A C+ID+  + G +  A  +  +M  + 
Sbjct: 524 MACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS 583

Query: 514 GCSIWESILRASAIYGDVKLTENVAERM 541
             S W S++    ++G      ++ ++M
Sbjct: 584 AIS-WTSMMTGYGMHGRGSEALDIFDKM 610



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 164/354 (46%), Gaps = 31/354 (8%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLS-------------------LSNVVLGNSLIDMY 190
           F+ LL    SA    QIH  +I SGL                    +S   LG  ++  Y
Sbjct: 40  FASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASY 99

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
              G   YA  V   +     + WN LI      G  + A++    M  +G  PD +T+ 
Sbjct: 100 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 159

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ AC +L +   G     L    GF SN  + +A + ++S+C  LE++  +F+++ + 
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 311 ---DYAVINVMISTYGRYGFGEVALELFQLM-LREDIRPTEFTLSCVLSSIPIPP----- 361
              D    N ++S + +      AL+LF  M L    +PT    S ++S + I P     
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN-ERSDIISIVNILPACGSL 278

Query: 362 --VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             V    + H  AI++G   +  V ++L++ YAK G ++++ ++F  ++ +D+VSWN ++
Sbjct: 279 KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 338

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            G +Q+G      ++F+ + +E +P D +T  AV+   +  G   + + +F  M
Sbjct: 339 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 195/675 (28%), Positives = 342/675 (50%), Gaps = 75/675 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT------------- 65
           S ++  C   + +   + +HG + K GF+  TY+ N  + LYSR G              
Sbjct: 275 SSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQ 334

Query: 66  ------------------SDDVLQLFDEIP----QKNCI--------------------- 82
                             SD  L+LF ++     + +C+                     
Sbjct: 335 RDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQF 394

Query: 83  ---------SWNICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                    S +I L G L     K  ++ TA + F      +VV WN M+  Y      
Sbjct: 395 HSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNL 454

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNS 185
           + + ++F++MQ++G+ P+ FT+  +L T SS      G+QIH  ++++G    NV + + 
Sbjct: 455 NESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF-NVYVSSV 513

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY KLG L +A  +F  ++E D++SW ++I+G         AL+ F  M+  G   D
Sbjct: 514 LIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSD 573

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
               +  I+AC  ++ L++G+Q+ A +   G+  +  V +A + L+++C ++ D+   F+
Sbjct: 574 NIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFD 633

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEH 364
           ++   D    N +IS + + G  E AL LF  M +       FT    V ++  +  V+ 
Sbjct: 634 KIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKL 693

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+M IK+G DS   V++ L+ +YAK G+ID +   F ++ +++ +SWN ++ G +Q
Sbjct: 694 GKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQ 753

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   + L +FE++ + G+ P+ +T   VL AC++ G VD+G+  F +M+E +G++P  E
Sbjct: 754 HGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPE 813

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC++DLL ++G L +A      MP QP   +  ++L A  ++ ++ + E  A  +++L
Sbjct: 814 HYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLEL 873

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+  YA+ G+W    R +++M+  G+ K  G SWI + N ++ F AG+ +
Sbjct: 874 EPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQK 933

Query: 605 HHGGQKIYLVLRLLT 619
           H    KIY  LR L 
Sbjct: 934 HPNVDKIYEYLRDLN 948



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/512 (28%), Positives = 242/512 (47%), Gaps = 76/512 (14%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+D CLS   F     +HG + K+GF A   L  R +DLY  FG  D  + +FDE+P + 
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRP 133

Query: 81  CISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSW--------------------- 115
              WN  L   +        L +F     E  +PD  ++                     
Sbjct: 134 LSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIH 193

Query: 116 ---------------NSMISGYASCGYSDYALEMFSKMQ----------LQGVRPSG--- 147
                          N +I  Y   G+ + A ++F  +Q          L G+  SG   
Sbjct: 194 ARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEE 253

Query: 148 --------------FTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSL 186
                         +    + S+V SAC        G+Q+HG +++ G SL   V  N+L
Sbjct: 254 EAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC-NAL 312

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + +Y +LG    A  VF  M + D +S+NSLISG    GY + AL+ F  M      PD 
Sbjct: 313 VTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDC 372

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T++ +++AC+ +  L  GKQ  + ++K G  S+ I+  A +DL+ KC+ ++ +   F  
Sbjct: 373 VTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLS 432

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHG 365
            +  +  + NVM+  YG       + ++F  M  E I P +FT   +L +   +  V+ G
Sbjct: 433 TETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLG 492

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  +K+GF  N  V+S L++MYAK G +D + +IF +L ++D+VSW  ++ G  Q+
Sbjct: 493 EQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQH 552

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            + AE L++F+E+ ++G+  D I  A+ + AC
Sbjct: 553 EKFAEALNLFKEMQDQGIHSDNIGFASAISAC 584



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 126/258 (48%), Gaps = 9/258 (3%)

Query: 215 NSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           N+ +S  +++  GE   ++  + M   G   +  T   +++ C        G ++    +
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+GF +  ++    +DL+     L+ +V +F+++     +  N ++  +         L 
Sbjct: 96  KMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLG 155

Query: 334 LFQLMLREDIRPTEFTLSCVL-----SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           LF+ ML+E ++P E T + VL       +P   VE   + H+  I  G++++  V + L+
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVE---KIHARTITHGYENSLFVCNPLI 212

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           ++Y K G ++S+ ++F  L KRD VSW  ++ GL+Q+G   E + +F ++   G+ P   
Sbjct: 213 DLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPY 272

Query: 449 TLAAVLLACNYGGFVDKG 466
             ++VL AC    F   G
Sbjct: 273 IFSSVLSACTKVEFYKVG 290


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/596 (31%), Positives = 312/596 (52%), Gaps = 37/596 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +HG++ KLGF ++  + N  +  Y + G                              
Sbjct: 178 KRVHGYVLKLGFGSYNAVVNSLIAAYFKCG------------------------------ 207

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             +++A  +FDE+ + DVVSWNSMISG    G+S   LE F +M   GV     T   +L
Sbjct: 208 -EVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVL 266

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              + V +   G+ +H   +++G S   V+  N+L+DMY K G L  A  VF+ M E  I
Sbjct: 267 VACANVGNLTLGRALHAYGVKAGFS-GGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTI 325

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW S+I+     G    A+  F  M+  G  PD Y ++ V++AC    +LDKG++V   
Sbjct: 326 VSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNH 385

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             K    SN  V +A +++++KC  +E++  +F QL   +    N MI  Y +      A
Sbjct: 386 IKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEA 445

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L+LF L +++ ++P + T++CVL +   +  +E G + H   ++ G+ S+  VA +L++M
Sbjct: 446 LQLF-LDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDM 504

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G +  + ++F  + K+D++ W  ++ G   +G   E +  FE++   G+ P+  + 
Sbjct: 505 YVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSF 564

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            ++L AC + G + +G  +F +MK E  + P  EHYAC++DLL ++G L +A     TMP
Sbjct: 565 TSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMP 624

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P  +IW ++L    I+ DV+L E VAE + +L+  +   Y LL   YA   +WE + +
Sbjct: 625 IKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKK 684

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +++ + K G+    GCSWI ++ +   F AG+  H   + I  +LR LT +M   G
Sbjct: 685 IQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGG 740



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/532 (26%), Positives = 255/532 (47%), Gaps = 44/532 (8%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +YCS ++  C   KS +  K +H  +   G      LG + + +Y   G           
Sbjct: 59  TYCS-VLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCG----------- 106

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                               +L    ++FD I    +  WN ++S YA  G    ++ +F
Sbjct: 107 --------------------DLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLF 146

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KMQ  G+R   +TF+ +L   +++      K++HG +++ G    N V+ NSLI  Y K
Sbjct: 147 EKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVV-NSLIAAYFK 205

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  +F  + + D++SWNS+ISGC  +G+    L+ F  M   G   D  T+  V
Sbjct: 206 CGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNV 265

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC  + NL  G+ + A  VK GF    +  +  +D++SKC  L  +  +F ++     
Sbjct: 266 LVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTI 325

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSM 371
                +I+ + R G    A+ LF  M  + +RP  + ++ V+ +      ++ G + H+ 
Sbjct: 326 VSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNH 385

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K+   SN  V+++LM MYAK GS++ +  IF +L  +++VSWNT++ G +QN    E 
Sbjct: 386 IKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEA 445

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYAC-I 489
           L +F + +++ L PD +T+A VL AC     ++KG  +    +++ Y     + H AC +
Sbjct: 446 LQLFLD-MQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGY---FSDLHVACAL 501

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +D+  + G L  A  +   +P +    +W  ++    ++G  K   +  E+M
Sbjct: 502 VDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKM 552



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 205/438 (46%), Gaps = 12/438 (2%)

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI-LLSTVSSACHGKQIHGSM 170
            V  N+ I  +   G    A+++ S+ Q   +  + +   + L + + S   GK++H  +
Sbjct: 24  TVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSII 83

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
             +G+++  V LG  L+ MY   G L     +F  +    I  WN L+S     G    +
Sbjct: 84  SSNGMAIDEV-LGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRES 142

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           +  F  M+  G   D YT + V+        + + K+V    +K+GF S + V+++ I  
Sbjct: 143 VGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAA 202

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           + KC  +E +  LF++L   D    N MIS     GF    LE F  ML   +     TL
Sbjct: 203 YFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATL 262

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
             VL +   +  +  G   H+  +K+GF    +  ++L++MY+K G+++ + E+FVK+ +
Sbjct: 263 VNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGE 322

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
             +VSW +I+    + G   E + +F+E+  +GL PD   + +V+ AC     +DKG  V
Sbjct: 323 TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREV 382

Query: 470 FSAMKEEY--GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            + +K+      +P       ++++  + G + +A  I S +P +   S W +++     
Sbjct: 383 HNHIKKNNMGSNLPVSN---ALMNMYAKCGSMEEANLIFSQLPVKNIVS-WNTMIGG--- 435

Query: 528 YGDVKLTENVAERMMDLQ 545
           Y    L     +  +D+Q
Sbjct: 436 YSQNSLPNEALQLFLDMQ 453



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 124/254 (48%), Gaps = 36/254 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    S D  + +H H+ K    ++  + N  +++Y++ G+ ++   +F ++P 
Sbjct: 364 TSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPV 423

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +SW                               N+MI GY+     + AL++F  M
Sbjct: 424 KNIVSW-------------------------------NTMIGGYSQNSLPNEALQLFLDM 452

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q Q ++P   T + +L   +       G++IHG ++R G   S++ +  +L+DMY K G+
Sbjct: 453 QKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGY-FSDLHVACALVDMYVKCGL 510

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  + + D+I W  +I+G    G+G+ A+  F  MR +G  P+E + + ++ A
Sbjct: 511 LVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYA 570

Query: 256 CTKLRNLDKGKQVF 269
           CT    L +G ++F
Sbjct: 571 CTHSGLLKEGWKLF 584


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 187/614 (30%), Positives = 318/614 (51%), Gaps = 48/614 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC+   S   A+ +HGH+ K G +A  ++    ++ Y R   + D            
Sbjct: 84  LLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARD------------ 131

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A ++FD +PE +VV+W ++++GY         LE+F +M  
Sbjct: 132 -------------------ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLE 172

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T    L+   ++C    GKQ+HG  I+ G   S   +GNSL  +Y KLG L 
Sbjct: 173 MGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAE-SITSMGNSLCSLYAKLGSLD 231

Query: 198 YAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A   F  + E ++I+W ++IS C  +    EL +  F  M   G  P+E+T++ V++ C
Sbjct: 232 SALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 291

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +L+ GKQV A S K+G  +N  V ++T+ L+ +    ++++RLFEQ++       N
Sbjct: 292 GTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWN 351

Query: 317 VMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            MIS Y +              G  AL +F+ + R  ++P  FT S +LS    +  +E 
Sbjct: 352 AMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQ 411

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IKSGF S+ VV S+L+ MY K G I  + + F+++  R  V+W +++ G +Q
Sbjct: 412 GEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQ 471

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G+  E + +FEE+   G+ P+ IT  ++L AC+Y G V++    F  MK+EY + P  +
Sbjct: 472 HGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVD 531

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C+ID+  + G++  A        F+P  +IW S++     +G+++L    A+++++L
Sbjct: 532 HYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLEL 591

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL   Y    RW+ + RV+K+M++  +  +   SWI IK+++Y F A +  
Sbjct: 592 KPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRT 651

Query: 605 HHGGQKIYLVLRLL 618
           H    ++Y +L  L
Sbjct: 652 HPQATELYQLLENL 665



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 38/234 (16%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K  V K  L   S ++  C +  + +  + IH    K GF +   + +  +++Y++ G  
Sbjct: 385 KRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCI 444

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
            D  + F E+P +  ++W                                SMISGY+  G
Sbjct: 445 QDANKAFLEMPTRTFVTW-------------------------------TSMISGYSQHG 473

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLG- 183
               A+++F +M+L GVRP+  TF  LLS  S A      + +  M++    +  VV   
Sbjct: 474 QPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY 533

Query: 184 NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYS 236
             +IDM+ +LG +  AF        E +   W+SL++GC + G  ELA   FY+
Sbjct: 534 GCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA---FYA 584


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/557 (31%), Positives = 300/557 (53%), Gaps = 9/557 (1%)

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           Q N  +    +    K   ++ A K+F+ +P+ D+VSWN++++GYA  G++  A+++  +
Sbjct: 174 QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQ 233

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           MQ  G +P   T   +L  V+       G+ IHG   R+G     V +  +++D Y K G
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM-VNVATAMLDTYFKCG 292

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  M   +++SWN++I G   +G  E A   F  M   G  P   ++   ++
Sbjct: 293 SVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALH 352

Query: 255 ACTKLRNLDKGKQVFAL--SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           AC  L +L++G+ V  L    K+GF  +  V+++ I ++SKC R++ +  +F  L     
Sbjct: 353 ACANLGDLERGRYVHRLLDEKKIGF--DVSVMNSLISMYSKCKRVDIAASVFGNLKHKTV 410

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSM 371
              N MI  Y + G    AL LF  M   DI+P  FTL  V++++    V   +++ H +
Sbjct: 411 VTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGL 470

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AI++  D N  V ++L++ +AK G+I ++ ++F  + +R +++WN ++ G   NG   E 
Sbjct: 471 AIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREA 530

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           LD+F E+    + P+ IT  +V+ AC++ G V++GM  F +MKE YG+ P  +HY  ++D
Sbjct: 531 LDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVD 590

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG+L  A      MP +PG ++  ++L A  I+ +V+L E  A+ + DL       
Sbjct: 591 LLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGY 650

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           + LL   YA    W+ + RV+  M K GI K  GCS + ++N ++TF +G   H   ++I
Sbjct: 651 HVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRI 710

Query: 612 YLVLRLLTWEMEDEGCV 628
           Y  L  L  EM+  G V
Sbjct: 711 YAYLETLGDEMKAAGYV 727



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 9/370 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K +++  A +VF+ +     V +++M+ GYA       A+  + +M+   V P  + F+ 
Sbjct: 88  KFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTY 147

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL           G++IHG +I +G   SN+    +++++Y K   +  A+ +F  M + 
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNGFQ-SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR 206

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SWN++++G   +G+   A+     M+ +G  PD  T+  V+ A   L+ L  G+ + 
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIH 266

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             + + GF     V +A +D + KC  +  +  +F+ +   +    N MI  Y + G  E
Sbjct: 267 GYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE 326

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM--AIKSGFDSNAVVASS 386
            A   F  ML E + PT  ++   L +   +  +E G   H +    K GFD +  V +S
Sbjct: 327 EAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVS--VMNS 384

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MY+K   +D +  +F  L  + +V+WN +++G  QNG   E L++F E+    + PD
Sbjct: 385 LISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPD 444

Query: 447 RITLAAVLLA 456
             TL +V+ A
Sbjct: 445 SFTLVSVITA 454



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 173/328 (52%), Gaps = 4/328 (1%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-EL 209
           +ILL   +S     QI   +I++G   +  +    LI ++ K   +  A  VF  +E +L
Sbjct: 48  AILLELCTSLKELHQILPLIIKNGF-YNEHLFQTKLISLFCKFNSITEAARVFEPVEHKL 106

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ +++++ G   +     A+  +  MR     P  Y  + ++    +  +L +G+++ 
Sbjct: 107 DVL-YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIH 165

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            + +  GF SN   ++A ++L++KC ++ED+ ++FE++ + D    N +++ Y + GF  
Sbjct: 166 GMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFAR 225

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+++   M     +P   TL  VL ++  +  +  G   H  A ++GF+    VA++++
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAML 285

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           + Y K GS+ S+  +F  +  R++VSWNT++ G  QNG + E    F ++L+EG+ P  +
Sbjct: 286 DTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNV 345

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           ++   L AC   G +++G  V   + E+
Sbjct: 346 SMMGALHACANLGDLERGRYVHRLLDEK 373



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 197/458 (43%), Gaps = 45/458 (9%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
            K+    ++IHG+ F+ GF     +    LD Y + G+      +F  +  +N +SWN  
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWN-- 313

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                                        +MI GYA  G S+ A   F KM  +GV P+ 
Sbjct: 314 -----------------------------TMIDGYAQNGESEEAFATFLKMLDEGVEPTN 344

Query: 148 FTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            +    L   ++      G+ +H  +    +   +V + NSLI MY K   +  A  VF 
Sbjct: 345 VSMMGALHACANLGDLERGRYVHRLLDEKKIGF-DVSVMNSLISMYSKCKRVDIAASVFG 403

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           N++   +++WN++I G   +G    AL+ F  M+     PD +T+  VI A   L    +
Sbjct: 404 NLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQ 463

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            K +  L+++     N  V +A ID  +KC  ++ + +LF+ +        N MI  YG 
Sbjct: 464 AKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGT 523

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS-QFHSMAIKSGFDSNAV 382
            G G  AL+LF  M    ++P E T   V+++      VE G   F SM    G +    
Sbjct: 524 NGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMD 583

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE- 441
              +++++  + G +D + +    +  +  ++    M+G     R  + +++ E+  +E 
Sbjct: 584 HYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGAC---RIHKNVELGEKTADEL 640

Query: 442 -GLPPDRITLAAVLLACNY--GGFVDKGMLVFSAMKEE 476
             L PD      VLLA  Y      DK   V +AM+++
Sbjct: 641 FDLDPDDGGY-HVLLANMYASASMWDKVARVRTAMEKK 677


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 339/660 (51%), Gaps = 90/660 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            ++  C    S+      HG +   GF ++ ++ N  + +YSR G+ ++   +FDEI Q 
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ- 225

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                    RG+                   DV+SWNS++S +     +  AL++FSKM 
Sbjct: 226 ---------RGI------------------DDVISWNSIVSAHVKSSNAWTALDLFSKMT 258

Query: 140 LQGVRPSGFTFSILLSTVS--SAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           L          S ++S V+   AC         K++HG+ IR+G +  +V +GN+LID Y
Sbjct: 259 LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAY 317

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR------------ 238
            K G++  A  VF  ME  D++SWN++++G   SG  E A + F +MR            
Sbjct: 318 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWT 377

Query: 239 -----------------------YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
                                  +SG  P+  TI  V++AC  L    +G ++ A S+K 
Sbjct: 378 AVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKN 437

Query: 276 GFLS----------NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYG 323
             L+          + +V +A ID++SKC   + +  +F+ +   +  V+   VMI  + 
Sbjct: 438 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 497

Query: 324 RYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-FDS 379
           +YG    AL+LF  M+ E   + P  +T+SC+L +   +  +  G Q H+  ++   ++S
Sbjct: 498 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYES 557

Query: 380 NA-VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +A  VA+ L++MY+K G +D++  +F  + ++  +SW ++M G   +GR +E LD+F+++
Sbjct: 558 SAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 617

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G  PD IT   VL AC++ G VD+G+  F +M  +YG+ P  EHYAC IDLL ++G+
Sbjct: 618 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGR 677

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L KA      MP +P   +W ++L A  ++ +V+L E+   +++++   +   Y+L++  
Sbjct: 678 LDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 737

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  GRW+ + R++ +M+K+GI K  GCSW+  +    +F  G+  H    +IY +L  L
Sbjct: 738 YATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 797



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 233/508 (45%), Gaps = 67/508 (13%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           D AL V + +     V WN +I  +   G  D A+ +  +M   G RP  FT   +L   
Sbjct: 113 DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 172

Query: 158 ----SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---D 210
               S  C G   HG +  +G   SNV + N+L+ MY + G L  A  +F  + +    D
Sbjct: 173 GELPSYRC-GSAFHGLICCNGFE-SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDD 230

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM------RYSGYSPDEYTISIVINACTKLRNLDK 264
           +ISWNS++S    S     ALD F  M      + +    D  +I  ++ AC  L+ + +
Sbjct: 231 VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQ 290

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            K+V   +++ G   +  V +A ID ++KC  +E++V++F  ++  D    N M++ Y +
Sbjct: 291 TKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQ 350

Query: 325 YGFGEVALELFQLMLREDIR-----------------------------------PTEFT 349
            G  E A ELF+ M +E+I                                    P   T
Sbjct: 351 SGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVT 410

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKS----------GFDSNAVVASSLMEMYAKTGSID 398
           +  VLS+   +     G++ H+ ++K+          G D + +V ++L++MY+K  S  
Sbjct: 411 IISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFK 470

Query: 399 SSTEIF--VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE--GLPPDRITLAAVL 454
           ++  IF  + L++R++V+W  ++ G  Q G + + L +F E++ E  G+ P+  T++ +L
Sbjct: 471 AARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCIL 530

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQP 513
           +AC +   +  G  + + +   +         A C+ID+  + G +  A  +  +M  + 
Sbjct: 531 MACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKS 590

Query: 514 GCSIWESILRASAIYGDVKLTENVAERM 541
             S W S++    ++G      ++ ++M
Sbjct: 591 AIS-WTSMMTGYGMHGRGSEALDIFDKM 617



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 165/354 (46%), Gaps = 31/354 (8%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLS-------------------LSNVVLGNSLIDMY 190
           F+ LL    SA    QIH  +I SGL                    +S   LG  ++  Y
Sbjct: 47  FASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASY 106

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
              G   YA  V   +     + WN LI      G  + A++    M  +G  PD +T+ 
Sbjct: 107 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 166

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ AC +L +   G     L    GF SN  + +A + ++S+C  LE++  +F+++ + 
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 311 ---DYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPP----- 361
              D    N ++S + +      AL+LF ++ L    +PT    S ++S + I P     
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN-ERSDIISIVNILPACGSL 285

Query: 362 --VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             V    + H  AI++G   +  V ++L++ YAK G ++++ ++F  ++ +D+VSWN ++
Sbjct: 286 KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 345

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            G +Q+G      ++F+ + +E +P D +T  AV+   +  G   + + +F  M
Sbjct: 346 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 187/617 (30%), Positives = 327/617 (52%), Gaps = 38/617 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C     F  A+ +H H+ K  F A     N  + +Y++F    D            
Sbjct: 205 IVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMAD------------ 252

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A+ VF  I   D++SW SMI+G++  GY   AL  F +M  
Sbjct: 253 -------------------AINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLS 293

Query: 141 QGV-RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           Q V +P+ F F    S  S       G+QIHG  I+ GL  S++  G SL DMY K G L
Sbjct: 294 QSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLG-SDLFAGCSLCDMYAKCGFL 352

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF ++E+ D+++WN++I+G  +    + +   F  MR++G  P++ T+  ++ AC
Sbjct: 353 ESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCAC 412

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
           ++   L+ G QV +  VK+GF  +  V ++ + ++SKC+ L D++++FE + ++ D    
Sbjct: 413 SEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSW 472

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIK 374
           N +++   +       L L +LM    I+P   TL+ VL SS  I   E GSQ H   +K
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG + +  V+++L+ MY K GS++ + ++F  +   D++SW+++++G  Q G   E  ++
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFEL 592

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +   G+ P+ IT   +L AC++ G V++G+ ++  M+E+Y + P +EH +C++DLL 
Sbjct: 593 FRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLA 652

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L  A D    MPF P   +W+++L A  ++G++++ +  AE ++ +   +     +
Sbjct: 653 RAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVM 712

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   +A  G W+   R++  MR+  + KV G SWI IK++++ F A +  H    KIY +
Sbjct: 713 LCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTM 772

Query: 615 LRLLTWEMEDEGCVYLE 631
           L  L  ++ D+ C  L+
Sbjct: 773 LEELMLQILDDSCDPLQ 789



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 182/345 (52%), Gaps = 6/345 (1%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSI-LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           A ++F K     ++   +T  I   S++ S  HG++IH  M+       +++L N ++ M
Sbjct: 84  AFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQ-PDMILQNHILSM 142

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           YGK G L  A  +F +M   +++SW S+ISG    G  + A+  +  M  SG+ PD +T 
Sbjct: 143 YGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTF 202

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             ++ +C+ L +    +Q+ A  +K  F ++ I  +A I +++K +++ D++ +F ++  
Sbjct: 203 GSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIII 262

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSIP--IPPVEHGS 366
            D      MI+ + + G+   AL  F+ ML + + +P EF      S+    + P + G 
Sbjct: 263 KDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP-DCGR 321

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H + IK G  S+     SL +MYAK G ++S+  +F  ++K DLV+WN I+ G     
Sbjct: 322 QIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVS 381

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            A E+   F ++   GL P+ +T+ ++L AC+    ++ G+ V S
Sbjct: 382 NAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHS 426


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 190/618 (30%), Positives = 318/618 (51%), Gaps = 46/618 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C      +    +HG + + GF+   Y+G   +D YS+ G              
Sbjct: 155 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG-------------- 200

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            N++ A  VFD++ E   V+W ++I+GY  CG S  +LE+F++M
Sbjct: 201 -----------------NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQM 243

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   V P  +    ++S+V SAC        GKQIH  ++R G  + +V + N LID Y 
Sbjct: 244 RETNVVPDRY----VVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM-DVSVVNVLIDFYT 298

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +     +F  M   +IISW ++ISG   + +   A+  F  M   G+ PD +  + 
Sbjct: 299 KCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTS 358

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+ +C     L++G+QV A ++K    S+  V +  ID+++K N L D+ ++F+ +   +
Sbjct: 359 VLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQN 418

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               N MI  Y        ALELF  M     +P EFT + ++++   +  + HG QFH+
Sbjct: 419 VISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHN 478

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +K G D    V ++L++MYAK GSI+ + ++F     RD+V WN+++    Q+G A E
Sbjct: 479 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEE 538

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +F E+++EG+ P+ +T  AVL AC++ G V+ G+  F++M   +G+ PG EHYAC++
Sbjct: 539 ALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVV 597

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
            LL ++G+L +A +    MP +P   +W S+L A  I G+V+L +  AE  +        
Sbjct: 598 SLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSG 657

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  +A +G W  + +V+  M  + + K  G SWI + N++  F A +  H     
Sbjct: 658 SYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD- 716

Query: 611 IYLVLRLLTWEMEDEGCV 628
           I  VL +L   ++  G V
Sbjct: 717 IGSVLDILIQHIKGAGYV 734



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 154/568 (27%), Positives = 277/568 (48%), Gaps = 59/568 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG +   G  + T+L N                           I  N+C     KS
Sbjct: 69  KIIHGQIIVSGLQSDTFLAN---------------------------ILINVCS----KS 97

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSIL 153
           D +D A  VFD++P  ++++W+SM+S Y+  GYS+ AL +F  +Q + G  P+ F    +
Sbjct: 98  DRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEF----V 153

Query: 154 LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           L++V  AC        G Q+HG ++RSG    +V +G SLID Y K G +  A  VF  +
Sbjct: 154 LASVIRACTQLGVVEKGAQLHGFVVRSGFD-QDVYVGTSLIDFYSKNGNIEEARLVFDQL 212

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            E   ++W ++I+G    G   ++L+ F  MR +   PD Y +S V++AC+ L  L+ GK
Sbjct: 213 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  ++ G   +  V++  ID ++KCNR++   +LF+Q+   +      MIS Y +  
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 332

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
           F   A++LF  M R   +P  F  + VL+S      +E G Q H+  IK+  +S+  V +
Sbjct: 333 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKN 392

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK+  +  + ++F  + +++++S+N ++ G +   + +E L++F E+      P
Sbjct: 393 GLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKP 452

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           +  T AA++ A +    +  G   F     + G+         ++D+  + G + +A  +
Sbjct: 453 NEFTFAALITAASNLASLRHGQQ-FHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKM 511

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGR 564
            ++  ++     W S++   A +G+ +    +   MM   + P+ + +  +  A +  GR
Sbjct: 512 FNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGR 570

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIK 592
            E           +G+N        GIK
Sbjct: 571 VE-----------DGLNHFNSMPGFGIK 587



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 178/339 (52%), Gaps = 6/339 (1%)

Query: 138 MQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +Q+  +RP    F+ LL    + +   H K IHG +I SGL  S+  L N LI++  K  
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQ-SDTFLANILINVCSKSD 98

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVI 253
            +  A  VF  M   ++I+W+S++S     GY E AL  F  + R SG  P+E+ ++ VI
Sbjct: 99  RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 158

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            ACT+L  ++KG Q+    V+ GF  +  V ++ ID +SK   +E++  +F+QL      
Sbjct: 159 RACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAV 218

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
               +I+ Y + G   V+LELF  M   ++ P  + +S VLS+  +   +E G Q H+  
Sbjct: 219 TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYV 278

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           ++ G + +  V + L++ Y K   + +  ++F ++  ++++SW T++ G  QN    E +
Sbjct: 279 LRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAM 338

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            +F E+   G  PD     +VL +C     +++G  V +
Sbjct: 339 KLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHA 377



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 35/293 (11%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ ++  C S ++ +  + +H +  K    +  ++ N  +D+Y++     D  ++FD + 
Sbjct: 356 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA 415

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           ++N IS+N  + G    + L  AL++F E+                             +
Sbjct: 416 EQNVISYNAMIEGYSSQEKLSEALELFHEM-----------------------------R 446

Query: 138 MQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           ++LQ  +P+ FTF+ L+   S ++S  HG+Q H  +++ GL     V  N+L+DMY K G
Sbjct: 447 VRLQ--KPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVT-NALVDMYAKCG 503

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  +F +    D++ WNS+IS     G  E AL  F  M   G  P+  T   V++
Sbjct: 504 SIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLS 563

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           AC+    ++ G   F      G    +   +  + L  +  +L ++    E++
Sbjct: 564 ACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKM 616


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 306/535 (57%), Gaps = 10/535 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A +VFD +PE + VSWN++I+GY   G    ALE+F +M+ +G+ P   TF+ 
Sbjct: 140 KCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFAS 199

Query: 153 LLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL- 209
           LL+ V   S     Q+HG +++ G +L   VL N+ I  Y + G L  +  +F  + ++ 
Sbjct: 200 LLTAVEGPSCFLMHQLHGKIVKYGSALGLTVL-NAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLD-KGKQ 267
           D+ISWN+++    ++G  + A+  F  M + SG  PD Y+ + +I++C++  + D +G+ 
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWDYAVINVMISTYGR 324
           +  L +K      + V +A I ++++ N    +ED+ + F  L   D    N M++ Y +
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G    AL+ F+ M  E++R  E+  S  L SS  +  ++ G Q H + I SGF SN  V
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +SSL+ MY+K+G ID + + F + DK   V WN ++ G  Q+G+A     +F E+L+   
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
           P D IT   ++ +C++ G VD+G  + + M+ +YGV    EHYAC +DL  +AGQL KA 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +  +MPF+P   +W ++L A  I+G+V+L  +VA  +   +      Y LL+  Y+  G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
            W     V++VM+K G++KV G SWI +KN +++FNA +  H    +IY +LR+L
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 34/393 (8%)

Query: 84  WNICLRGLLKS--DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           WN  L    +S  D L  A +VFDE+P  D VSWN++++  A+ G    A  +   M  Q
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQ 87

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G+  + F     L + + A     G Q+    ++SGL+ +NV   ++L+D+Y K G +  
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLA-NNVFAASALLDVYAKCGRVRD 146

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  M E + +SWN+LI+G   SG    AL+ F  M   G +PDE T + ++ A   
Sbjct: 147 ARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV-- 204

Query: 259 LRNLDKGKQVFALS------VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWD 311
                +G   F +       VK G      VL+A I  +S+C  L+DS R+F+ + D  D
Sbjct: 205 -----EGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQ--- 367
               N M+  Y   G  + A++ F  M++E  + P  ++ + ++SS      EHG     
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS----EHGHDDHQ 315

Query: 368 ---FHSMAIKSGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMG 421
               H + IKS  +    V ++L+ MY +      ++ + + F  L  +D VSWN+++ G
Sbjct: 316 GRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTG 375

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +Q+G +A+ L  F  +  E +  D    +A L
Sbjct: 376 YSQHGLSADALKFFRCMCSENVRTDEYAFSAAL 408



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 162/332 (48%), Gaps = 15/332 (4%)

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV--LYYAFGVFLNMEELDIISWNSL 217
           A    + H S+++SG++       N L+  Y +     L  A  VF  +   D +SWN+L
Sbjct: 7   AVAAARSHASLLKSGVAAPTP--WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNAL 64

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           ++    SG    A     +M   G + + + +   + +    R    G Q+ +L++K G 
Sbjct: 65  LAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGL 124

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
            +N    SA +D+++KC R+ D+ ++F+ +   +    N +I+ Y   G    ALELF  
Sbjct: 125 ANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLE 184

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           M RE + P E T + +L+++  P      Q H   +K G      V ++ +  Y++ GS+
Sbjct: 185 MEREGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSL 244

Query: 398 DSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDRITLAAVLL 455
             S  IF  + D RDL+SWN ++   T NG   E +  F  +++E G+ PD  +  +++ 
Sbjct: 245 KDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIIS 304

Query: 456 AC------NYGGFVDKGMLVFSAMKEEYGVMP 481
           +C      ++ G V  G+++ SA++   GV P
Sbjct: 305 SCSEHGHDDHQGRVIHGLVIKSALE---GVTP 333



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 191/438 (43%), Gaps = 47/438 (10%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-KNCISWNICLRGLLKSD 95
           +HG + K G      + N  +  YS+ G+  D  ++FD I   ++ ISW           
Sbjct: 215 LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISW----------- 263

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTFSILL 154
                               N+M+  Y   G  D A++ F + MQ  GV P  ++F+ ++
Sbjct: 264 --------------------NAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSII 303

Query: 155 STVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGVFLNME 207
           S+ S   H    G+ IHG +I+S L     V  N+LI MY +     ++  A+  F ++ 
Sbjct: 304 SSCSEHGHDDHQGRVIHGLVIKSALEGVTPVC-NALIAMYTRYNENCMMEDAYKCFNSLV 362

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D +SWNS+++G    G    AL  F  M       DEY  S  + + ++L  L  GKQ
Sbjct: 363 LKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ 422

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  L +  GF SN  V S+ I ++SK   ++D+ + FE+ D+      N MI  Y ++G 
Sbjct: 423 IHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQ 482

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVAS 385
            E    LF  ML+        T   +++S      V+ GS+  ++M  K G        +
Sbjct: 483 AENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYA 542

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             +++Y + G +D + ++   +  + D + W T++     +G      DV   L    + 
Sbjct: 543 CGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLF---VA 599

Query: 445 PDRITLAAVLLACNYGGF 462
             R     VLL+  Y G 
Sbjct: 600 EPRQHSTYVLLSSMYSGL 617



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 41/209 (19%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
               K IHG +   GF ++ ++ +  + +YS+ G  DD  + F+E  + + + W      
Sbjct: 417 LQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW------ 470

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                    N+MI GYA  G ++    +F++M  +       TF
Sbjct: 471 -------------------------NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITF 505

Query: 151 SILLSTVSSAC---HGKQIHGSM-IRSG--LSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             L+++ S A     G +I  +M  + G  L + +   G   +D+YG+ G L  A  +  
Sbjct: 506 VGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACG---VDLYGRAGQLDKAKKLID 562

Query: 205 NME-ELDIISWNSLISGCFNSGYGELALD 232
           +M  E D + W +L+  C   G  ELA D
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASD 591


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 207/716 (28%), Positives = 348/716 (48%), Gaps = 111/716 (15%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C   + F+  K +H  L +LG     YLGN  ++ YS+FG    V Q+F  +  ++
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRD 143

Query: 81  CISWN-------------------------------ICLRGLLKSDNLDTALKVFDEIP- 108
            ++W+                               I    +LK+ N  + L+   EI  
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 109 -------EPDVVSWNSMISGYASCGYSDYALEMFSKMQ---------------------- 139
                  E DV    ++I+ Y+ CG    A E+F KM+                      
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 140 --------LQ-GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
                   LQ G+ P+  TF  LL   +T  +   G++IH  +   GL  ++VV+ N+LI
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE-TDVVVANALI 322

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL-ALDQFYS----MRYSGY 242
            MY K   +  A   F  M + D+ISW+++I+G   SGY +  +LD+ +     MR  G 
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGV 382

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
            P++ T   ++ AC+    L++G+Q+ A   KVGF S+  + +A  ++++KC  + ++ +
Sbjct: 383 FPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQ 442

Query: 303 LFEQLDR-----W--------------------------DYAVINVMISTYGRYGFGEVA 331
           +F +++      W                          +    N+MI+ Y + G     
Sbjct: 443 VFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKV 502

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            EL   M  E  +P   T+  +L +   +  +E G   H+ A+K G +S+ VVA+SL+ M
Sbjct: 503 FELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGM 562

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K G +  +  +F K+  RD V+WN ++ G  Q+G   E +D+F+ +L+E +PP+ IT 
Sbjct: 563 YSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITF 622

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            AV+ AC   G V +G  +F  M+E++ + PG++HY C++DLL +AG+L +A +    MP
Sbjct: 623 TAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMP 682

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P  S+W ++L A   + +V+L E  A  ++ L+  +   Y  L+  YA  GRW+   +
Sbjct: 683 CEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTK 742

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           V+KVM   G+ K  G S I I  RI+TF A +  H     I+  L +LT EM++ G
Sbjct: 743 VRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAG 798



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 182/388 (46%), Gaps = 70/388 (18%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A ++  ++++ S L++ C + ++ +  + IH H+ + G      + N  + +Y +    
Sbjct: 273 QAGISPNAVTFVS-LLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCI 331

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
            D  + FD + +++ IS                               W++MI+GYA  G
Sbjct: 332 QDARETFDRMSKRDVIS-------------------------------WSAMIAGYAQSG 360

Query: 127 YSDY-----ALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSG---- 174
           Y D        ++  +M+ +GV P+  TF  +L   S   +   G+QIH  + + G    
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESD 420

Query: 175 --------------------------LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
                                     +   NVV   SL+ MY K G L  A  VF  M  
Sbjct: 421 RSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMST 480

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SWN +I+G   SG      +   SM+  G+ PD  TI  ++ AC  L  L++GK V
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLV 540

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A +VK+G  S+++V ++ I ++SKC  + ++  +F+++   D    N M++ YG++G G
Sbjct: 541 HAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIG 600

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSS 356
             A++LF+ ML+E + P E T + V+S+
Sbjct: 601 PEAVDLFKRMLKERVPPNEITFTAVISA 628



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 196/435 (45%), Gaps = 58/435 (13%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDR-------------------CLSFKSFDFAKTIHGHL 41
           ++ Y +  + +K SL    QL++R                   C    + +  + IH  +
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEI 412

Query: 42  FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL 101
            K+GF +   L     ++Y++ G+  +  Q+F ++  KN ++W   L   +K  +L +A 
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVS 158
           KVF E+   +VVSWN MI+GYA  G      E+ S M+++G +P   T   +L     +S
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALS 532

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
           +   GK +H   ++ GL  S+ V+  SLI MY K G +  A  VF  +   D ++WN+++
Sbjct: 533 ALERGKLVHAEAVKLGLE-SDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAML 591

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G    G G  A+D F  M      P+E T + VI+AC +   + +G+++F +       
Sbjct: 592 AGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRI------- 644

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
                             +++  R+  +  +  Y     M+   GR G  + A E  Q M
Sbjct: 645 ------------------MQEDFRM--KPGKQHYG---CMVDLLGRAGRLQEAEEFIQRM 681

Query: 339 LRE-DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E DI      L    S   +   E  +  H + ++    SNA V  +L  +YA+ G  
Sbjct: 682 PCEPDISVWHALLGACKSHDNVQLAEWAAH-HILRLEP---SNASVYVTLSNIYAQAGRW 737

Query: 398 DSSTEIFVKLDKRDL 412
           D ST++   +D + L
Sbjct: 738 DDSTKVRKVMDDKGL 752



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 121/240 (50%), Gaps = 1/240 (0%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           ++  G   +  T   +I  C KLR  + GK V     ++G   +  + ++ I+ +SK   
Sbjct: 69  IKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGD 128

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           +    ++F ++   D    + MI+ Y        A + F+ M   +I P   T   +L +
Sbjct: 129 VASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKA 188

Query: 357 I-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
                 +E   + H++   SG +++  VA++L+ MY+K G I  + EIF K+ +R++VSW
Sbjct: 189 CNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSW 248

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
             I+    Q+ +  E  +++E++L+ G+ P+ +T  ++L +CN    +++G  + S + E
Sbjct: 249 TAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 102/213 (47%), Gaps = 3/213 (1%)

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A++L  ++ +  +     T  C++     +   E G   H    + G   +  + +SL+ 
Sbjct: 62  AIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLIN 121

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            Y+K G + S  ++F ++  RD+V+W++++     N   A+  D FE + +  + P+RIT
Sbjct: 122 FYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRIT 181

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             ++L ACN    ++K   + + +K   G+         +I +  + G++  A +I   M
Sbjct: 182 FLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACEIFQKM 240

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
             +   S W +I++A+A +  +     + E+M+
Sbjct: 241 KERNVVS-WTAIIQANAQHRKLNEAFELYEKML 272


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 192/659 (29%), Positives = 329/659 (49%), Gaps = 74/659 (11%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H H  K G  +  +  N+ + LYS+ G   +  +LFDE+P++N  +WN  +   +K+ NL
Sbjct: 11  HAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIWAYIKTQNL 70

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASC-GYSDYALEMFSKMQL--QGVRPSGFTFSILL 154
             A ++FD  P  D+V++NSM+SGY +  GY   AL++F +MQ      R   F+ + +L
Sbjct: 71  KQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTRML 130

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-------- 203
              + +S   +GKQ+H  M+++  ++S   + +SLIDMY K G       VF        
Sbjct: 131 NLSAKLSMESYGKQLHSYMVKTANNISGFAV-SSLIDMYSKCGCFREVCQVFDGCAGVLD 189

Query: 204 -------------------------LNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
                                     ++E  D++SWN+LISG   +G  E AL  F  M 
Sbjct: 190 LVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHME 249

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            +    +E+TI+ +++AC  LR+L  GK+V    +K     N  + S  +D++ KC  ++
Sbjct: 250 ENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMK 309

Query: 299 -------------------------------DSVRLFEQLDRWDYAVINVMISTYGRYGF 327
                                          ++ RLF+ L      +   + + Y +   
Sbjct: 310 YAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQ 369

Query: 328 GEVALELF-QLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVAS 385
            E   EL  +  ++E + P    L  VL +  I   +  G Q H+  ++ G + +  + S
Sbjct: 370 CEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVS 429

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           ++++MY+K+G+I  + +IF ++  RD V +N +  G   +G   + +  FEE+LE G+ P
Sbjct: 430 AMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRP 489

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T  A+L AC + G V+ G   F++M + Y ++P  +HYAC+IDL  +A QL KA+  
Sbjct: 490 DAVTFVALLSACRHCGLVELGEKYFASMTD-YNILPEIDHYACMIDLYGRANQLEKAVAF 548

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              +P +P   I  + L A  I  + KL     E+++ ++  +   Y  L   YA  G+W
Sbjct: 549 MKRIPIEPDAVILGAFLNACRINRNTKLAREAEEKILRIEGDNGARYVQLANVYAAEGKW 608

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
             + R+++ MR+N I K  GCSW+ ++NR++ F +G+  H   + IY +L +LT E+ D
Sbjct: 609 VEMGRIRRKMRENEIKKFAGCSWVYVENRVHIFTSGDSSHSSAEAIYSILLILTAELND 667



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 169/366 (46%), Gaps = 48/366 (13%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD------EIPQKNCISWNI 86
           + K +H ++ K   N   +  +  +D+YS+ G   +V Q+FD      ++  KN +    
Sbjct: 141 YGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNAMVAAC 200

Query: 87  CLRGLLKSDNLDTALKVF-DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
           C  G      L+  + +F  ++   DVVSWN++ISGY   G  + AL++F  M+   VR 
Sbjct: 201 CREG-----ELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRW 255

Query: 146 SGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY---- 198
           +  T + LLS  +   S   GK++HG +++  L   N  + + L+D+Y K G + Y    
Sbjct: 256 NEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGF-NPFISSGLVDVYCKCGNMKYAELV 314

Query: 199 --------AFGV-------------------FLNMEELDIISWNSLISGCFNSGYGELAL 231
                   AF +                   F ++ E   I W +L +G   S   E   
Sbjct: 315 YATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVF 374

Query: 232 DQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           +     R      PD   +  V+ AC     L+ GKQ+ A  +++G   +  ++SA +D+
Sbjct: 375 ELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDM 434

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           +SK   ++ + ++F+++   D  + N+M + Y  +G    A++ F+ ML   +RP   T 
Sbjct: 435 YSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTF 494

Query: 351 SCVLSS 356
             +LS+
Sbjct: 495 VALLSA 500



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 142/304 (46%), Gaps = 15/304 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFK--LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           L+  C   +S    K +HG + K  LGFN   ++ +  +D+Y + G       ++  I  
Sbjct: 263 LLSACAGLRSLKLGKEVHGWVLKYELGFNP--FISSGLVDVYCKCGNMKYAELVYATIGT 320

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N  S    + G     N+  A ++FD + E   + W ++ +GY      +   E+ S+ 
Sbjct: 321 GNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEF 380

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   V+ +    +++L +V  AC        GKQIH  ++R G+ L   ++ ++++DMY 
Sbjct: 381 R---VKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLV-SAMVDMYS 436

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G + YA  +F  +   D + +N + +G  + G+   A+ QF  M   G  PD  T   
Sbjct: 437 KSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTFVA 496

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           +++AC     ++ G++ FA       L      +  IDL+ + N+LE +V   +++    
Sbjct: 497 LLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQLEKAVAFMKRIPIEP 556

Query: 312 YAVI 315
            AVI
Sbjct: 557 DAVI 560



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +  ++ G +FH+ AIK+G  S    ++ L+ +Y+K G +  + ++F ++ +R++ +WN I
Sbjct: 1   MRSIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAI 60

Query: 419 MMGL--TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA-CNYGGFVDKGMLVFSAMK 474
           +     TQN + A       EL +     D +T  ++L    N  G+    + +F  M+
Sbjct: 61  IWAYIKTQNLKQA------RELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQ 113


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 319/601 (53%), Gaps = 35/601 (5%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + + L++  +  +S   A  IH  +    + +  +L N  ++LY++ G  +  L LF   
Sbjct: 144 HLNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFS-- 201

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                          +   +  T            +V+W S+I+  +       AL +F+
Sbjct: 202 ---------------ITHHHFKT------------IVTWTSLITHLSHFNMHLQALSLFN 234

Query: 137 KMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M+  G  P+ FTFS +LS  ++     HG+Q+H  + + G   +N+ +G +L+DMY K 
Sbjct: 235 QMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFD-ANIFVGTALVDMYAKC 293

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIV 252
             ++ A  VF  M E +++SWNS+I G F++   + A+  F   +R     P+E ++S V
Sbjct: 294 ADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSV 353

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC  +  L+ G+QV  + VK G +  + V+++ +D++ KC   ++ V+LF+ +   D 
Sbjct: 354 LSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDV 413

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSM 371
              NV++  + +    E A   F +M RE I P E + S VL SS  +  +  G+  H  
Sbjct: 414 VTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQ 473

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            IK G+  N  +  SL+ MYAK GS+  + ++F  ++  +++SW  ++     +G A + 
Sbjct: 474 IIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQV 533

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           +++FE +L EG+ P  +T   VL AC++ G V++G+  F++MK+ + + PG EHYAC++D
Sbjct: 534 IELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVD 593

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG L +A     +MP +P  S+W ++L A   YG++K+    AER+ +++  +P  
Sbjct: 594 LLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGN 653

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL       GR E    V+++M  NG+ K  GCSWI +KN  + F A +  H    +I
Sbjct: 654 YVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEI 713

Query: 612 Y 612
           Y
Sbjct: 714 Y 714


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 306/535 (57%), Gaps = 10/535 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A +VFD +PE + VSWN++I+GY   G    ALE+F +M+ +G+ P   TF+ 
Sbjct: 140 KCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFAS 199

Query: 153 LLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL- 209
           LL+ V   S     Q+HG +++ G +L   VL N+ I  Y + G L  +  +F  + ++ 
Sbjct: 200 LLTAVEGPSCFLMHQLHGKIVKYGSALGLTVL-NAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLD-KGKQ 267
           D+ISWN+++    ++G  + A+  F  M + SG  PD Y+ + +I++C++  + D +G+ 
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWDYAVINVMISTYGR 324
           +  L +K      + V +A I ++++ N    +ED+ + F  L   D    N M++ Y +
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G    AL+ F+ M  E++R  E+  S  L SS  +  ++ G Q H + I SGF SN  V
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +SSL+ MY+K+G ID + + F + DK   V WN ++ G  Q+G+A     +F E+L+   
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
           P D IT   ++ +C++ G VD+G  + + M+ +YGV    EHYAC +DL  +AGQL KA 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +  +MPF+P   +W ++L A  I+G+V+L  +VA  +   +      Y LL+  Y+  G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
            W     V++VM+K G++KV G SWI +KN +++FNA +  H    +IY +LR+L
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 34/393 (8%)

Query: 84  WNICLRGLLKS--DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           WN  L    +S  D L  A +VFDE+P  D VSWN++++  A+ G    A  +   M  Q
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQ 87

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G+  + F     L + + A     G Q+    ++SGL+ +NV   ++L+D+Y K G +  
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLA-NNVFAASALLDVYAKCGRVRD 146

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  M E + +SWN+LI+G   SG    AL+ F  M   G +PDE T + ++ A   
Sbjct: 147 ARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV-- 204

Query: 259 LRNLDKGKQVFALS------VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWD 311
                +G   F +       VK G      VL+A I  +S+C  L+DS R+F+ + D  D
Sbjct: 205 -----EGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQ--- 367
               N M+  Y   G  + A++ F  M++E  + P  ++ + ++SS      EHG     
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS----EHGHDDHQ 315

Query: 368 ---FHSMAIKSGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMG 421
               H + IKS  +    V ++L+ MY +      ++ + + F  L  +D VSWN+++ G
Sbjct: 316 GRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTG 375

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +Q+G +A+ L  F  +  E +  D    +A L
Sbjct: 376 YSQHGLSADALKFFRCMCSENVRTDEYAFSAAL 408



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 13/308 (4%)

Query: 184 NSLIDMYGKLGV--LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           N L+  Y +     L  A  VF  +   D +SWN+L++    SG    A     +M   G
Sbjct: 29  NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG 88

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            + + + +   + +    R    G Q+ +L++K G  +N    SA +D+++KC R+ D+ 
Sbjct: 89  LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDAR 148

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           ++F+ +   +    N +I+ Y   G    ALELF  M RE + P E T + +L+++  P 
Sbjct: 149 QVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPS 208

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMM 420
                Q H   +K G      V ++ +  Y++ GS+  S  IF  + D RDL+SWN ++ 
Sbjct: 209 CFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLG 268

Query: 421 GLTQNGRAAETLDVFEELLEE-GLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAM 473
             T NG   E +  F  +++E G+ PD  +  +++ +C      ++ G V  G+++ SA+
Sbjct: 269 AYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSAL 328

Query: 474 KEEYGVMP 481
           +   GV P
Sbjct: 329 E---GVTP 333



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 191/438 (43%), Gaps = 47/438 (10%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-KNCISWNICLRGLLKSD 95
           +HG + K G      + N  +  YS+ G+  D  ++FD I   ++ ISW           
Sbjct: 215 LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISW----------- 263

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTFSILL 154
                               N+M+  Y   G  D A++ F + MQ  GV P  ++F+ ++
Sbjct: 264 --------------------NAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSII 303

Query: 155 STVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGVFLNME 207
           S+ S   H    G+ IHG +I+S L     V  N+LI MY +     ++  A+  F ++ 
Sbjct: 304 SSCSEHGHDDHQGRVIHGLVIKSALEGVTPVC-NALIAMYTRYNENCMMEDAYKCFNSLV 362

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D +SWNS+++G    G    AL  F  M       DEY  S  + + ++L  L  GKQ
Sbjct: 363 LKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ 422

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  L +  GF SN  V S+ I ++SK   ++D+ + FE+ D+      N MI  Y ++G 
Sbjct: 423 IHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQ 482

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVAS 385
            E    LF  ML+        T   +++S      V+ GS+  ++M  K G        +
Sbjct: 483 AENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYA 542

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             +++Y + G +D + ++   +  + D + W T++     +G      DV   L    + 
Sbjct: 543 CGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLF---VA 599

Query: 445 PDRITLAAVLLACNYGGF 462
             R     VLL+  Y G 
Sbjct: 600 EPRQHSTYVLLSSMYSGL 617



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 41/209 (19%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
               K IHG +   GF ++ ++ +  + +YS+ G  DD  + F+E  + + + W      
Sbjct: 417 LQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW------ 470

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                    N+MI GYA  G ++    +F++M  +       TF
Sbjct: 471 -------------------------NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITF 505

Query: 151 SILLSTVSSAC---HGKQIHGSM-IRSG--LSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             L+++ S A     G +I  +M  + G  L + +   G   +D+YG+ G L  A  +  
Sbjct: 506 VGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACG---VDLYGRAGQLDKAKKLID 562

Query: 205 NME-ELDIISWNSLISGCFNSGYGELALD 232
           +M  E D + W +L+  C   G  ELA D
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASD 591


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 184/612 (30%), Positives = 317/612 (51%), Gaps = 45/612 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C       + K +H H+ K GF     + +  + +Y++    +D            
Sbjct: 112 VLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED------------ 159

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A+K+FDE+PE DV SWN++IS Y   G  + ALE+F +M++
Sbjct: 160 -------------------AIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 200

Query: 141 QGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            G +P     S+ L+TV S+C        GK+IH  ++RSG +L   V  ++L+DMYGK 
Sbjct: 201 SGFKPD----SVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV-SSALVDMYGKC 255

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  VF  ++  +++SWNS+I+G    G  +  ++ F  M   G  P   T+S ++
Sbjct: 256 GCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSIL 315

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC++  NL  GK +    ++    ++  V S+ IDL+ KC  +  +  +F+ + + +  
Sbjct: 316 MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVV 375

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
             NVMIS Y + G    AL +F  M +  ++P   T + VL +   +  +E G + H+  
Sbjct: 376 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 435

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           I+S  + N VV  +L++MYAK G++D +  IF +L +RD VSW +++     +G+A E L
Sbjct: 436 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 495

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +FE++ +    PD++T  A+L AC++ G VD+G   F+ M  EYG  P  EHY+C+IDL
Sbjct: 496 KLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDL 555

Query: 493 LCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           L + G+L +A +I    P  +    +  ++  A  ++  + L E +   +++     P  
Sbjct: 556 LGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPST 615

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y +L+  YA   +W+ + +V+  +++ G+ K  GCSWI +  RI+ F   +  H     I
Sbjct: 616 YIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMI 675

Query: 612 YLVLRLLTWEME 623
           Y  + +L   +E
Sbjct: 676 YECMSILASHVE 687



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 240/451 (53%), Gaps = 9/451 (1%)

Query: 97  LDTALKVFDEIPEP-DVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILL 154
             +A  VF  I  P D+  WN +++           LE+F ++     ++P  FT+  +L
Sbjct: 54  FQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVL 113

Query: 155 STVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S      +GK +H  +I+SG ++ +VV+ +S + MY K  V   A  +F  M E D+
Sbjct: 114 KACSGLGRVGYGKMVHTHVIKSGFAM-DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDV 172

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWN++IS  +  G  E AL+ F  M+ SG+ PD  T++ VI++C +L +L++GK++   
Sbjct: 173 ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHME 232

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            V+ GF  +  V SA +D++ KC  LE +  +FEQ+ R +    N MI+ Y   G  +  
Sbjct: 233 LVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSC 292

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           +ELF+ M  E IRPT  TLS +L +      ++ G   H   I++  +++  V SSL+++
Sbjct: 293 IELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 352

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G+I S+  +F  + K ++VSWN ++ G  + G   E L +F ++ + G+ PD IT 
Sbjct: 353 YFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 412

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            +VL AC+    ++KG  + + + E   +   E     ++D+  + G + +A+ I + +P
Sbjct: 413 TSVLPACSQLAVLEKGKEIHNFIIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 471

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +   S W S++ A   +G       + E+M
Sbjct: 472 ERDFVS-WTSMIAAYGSHGQAFEALKLFEKM 501



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 40/352 (11%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           + +L+  S ++  C    +    K IHG++ +    A  ++ +  +DLY + G       
Sbjct: 305 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 364

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  +P+ N +SWN+                               MISGY   G    A
Sbjct: 365 VFQNMPKTNVVSWNV-------------------------------MISGYVKVGSYLEA 393

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L +F+ M+  GV+P   TF+ +L   S       GK+IH  +I S L ++ VV+G +L+D
Sbjct: 394 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMG-ALLD 452

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  +F  + E D +SW S+I+   + G    AL  F  M+ S   PD+ T
Sbjct: 453 MYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVT 512

Query: 249 ISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              +++AC+    +D+G   F  +  + GF       S  IDL  +  RL ++  + ++ 
Sbjct: 513 FLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRT 572

Query: 308 D--RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
              R D  +++ + S    +   ++  ++ +L++ +D  P + +   +LS++
Sbjct: 573 PDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKD--PDDPSTYIILSNM 622


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 196/662 (29%), Positives = 335/662 (50%), Gaps = 83/662 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    S     ++H  +   G  ++ ++ N  + +Y R G  DD  Q+FDE+ ++ 
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERK 192

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                         D+VSWNS+++ Y   G S  AL +  +M  
Sbjct: 193 I----------------------------EDIVSWNSILAAYVQGGQSRTALRIAFRMGN 224

Query: 141 Q---GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-- 192
                +RP   T   +L   +S     HGKQ+HG  +R+GL + +V +GN+L+ MY K  
Sbjct: 225 HYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGL-VDDVFVGNALVSMYAKCS 283

Query: 193 -----------------------------LGVLYYAFGVFLNMEE----LDIISWNSLIS 219
                                        +G    A  +F  M+E    LD+I+W+++I+
Sbjct: 284 KMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIA 343

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G    G+G  ALD F  M+  G  P+  T++ +++ C  +  L  GKQ  A  +K     
Sbjct: 344 GYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNL 403

Query: 280 N-------SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEV 330
           N        +VL+  ID+++KC     +  +F+ ++  D  V+   VMI  Y ++G    
Sbjct: 404 NWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEAND 463

Query: 331 ALELFQLMLRE--DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASS 386
           AL+LF  + ++   ++P  FTLSC L +   +  +  G Q H+ A+++  +S  + V + 
Sbjct: 464 ALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNC 523

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MY+K+G ID++  +F  +  R++VSW ++M G   +GR  E L +F+++ + G   D
Sbjct: 524 LIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVD 583

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT   VL AC++ G VD+GM+ F  M + +G+ PG EHYAC++DLL +AG+L +A+++ 
Sbjct: 584 GITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELI 643

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             M  +P   +W ++L AS I+ +++L E  A ++ +L   +   Y+LL+  YA   RW+
Sbjct: 644 KNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWK 703

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            + R++ +M+  GI K  GCSWI  K    TF  G+  H   ++IY +L  L   ++D G
Sbjct: 704 DVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMG 763

Query: 627 CV 628
            V
Sbjct: 764 YV 765



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 233/498 (46%), Gaps = 65/498 (13%)

Query: 107 IPEPDVVSW-NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACH 162
           IP    V W N++I      G  D  L  + +MQ  G  P  +TF  +L     + S  H
Sbjct: 86  IPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRH 145

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF---LNMEELDIISWNSLIS 219
           G  +H  +  +GL  SNV + NS++ MYG+ G L  A  +F   L  +  DI+SWNS+++
Sbjct: 146 GASVHAIVCANGLG-SNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILA 204

Query: 220 GCFNSGYGELALDQFYSM--RYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
                G    AL   + M   YS    PD  T+  ++ AC  +  L  GKQV   SV+ G
Sbjct: 205 AYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNG 264

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            + +  V +A + +++KC+++ ++ ++FE + + D    N M++ Y + G  + AL LF+
Sbjct: 265 LVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFK 324

Query: 337 LMLREDIR-----------------------------------PTEFTLSCVLSSIP-IP 360
           +M  EDI+                                   P   TL+ +LS    + 
Sbjct: 325 MMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVG 384

Query: 361 PVEHGSQFHSMAIKSGFDSN-------AVVASSLMEMYAKTGSIDSSTEIFVKLDKRD-- 411
            + +G Q H+  IK+  + N        +V + L++MYAK  S   +  IF  ++ +D  
Sbjct: 385 ALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKN 444

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEE--GLPPDRITLAAVLLACNYGGFVDKGMLV 469
           +V+W  ++ G  Q+G A + L +F ++ ++   L P+  TL+  L+AC   G +  G  +
Sbjct: 445 VVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQL 504

Query: 470 FS-AMKEEYGVMPGEEHYA--CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
            + A++ E      E  Y   C+ID+  ++G +  A  +   M  +   S W S++    
Sbjct: 505 HAYALRNEN---ESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGYG 560

Query: 527 IYGDVKLTENVAERMMDL 544
           ++G  +   ++ ++M  L
Sbjct: 561 MHGRGEEALHLFDQMQKL 578



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 165/335 (49%), Gaps = 23/335 (6%)

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL----NMEELDIIS----------- 213
           S++R   +L N  L +  I ++G   +  YA G ++    + E + ++            
Sbjct: 35  SLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFW 94

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN+LI      G  +  L  +  M+  G+ PD YT   V+ AC ++ +L  G  V A+  
Sbjct: 95  WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVC 154

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ-LDRW--DYAVINVMISTYGRYGFGEV 330
             G  SN  + ++ + ++ +C  L+D+ ++F++ L+R   D    N +++ Y + G    
Sbjct: 155 ANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRT 214

Query: 331 ALELFQLMLRE---DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
           AL +   M       +RP   TL  +L +   +  ++HG Q H  ++++G   +  V ++
Sbjct: 215 ALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNA 274

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MYAK   ++ + ++F  + K+D+VSWN ++ G +Q G     L +F+ + EE +  D
Sbjct: 275 LVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLD 334

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
            IT +AV+      G   + + VF  M + YG+ P
Sbjct: 335 VITWSAVIAGYAQKGHGFEALDVFRQM-QLYGLEP 368


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 203/685 (29%), Positives = 334/685 (48%), Gaps = 85/685 (12%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL--QLFDEIPQKNCISW 84
           +  S+  A+T+HGH+   GF    ++ NR +D+Y  + +SD V   +LFDEIPQ + I+ 
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIY--WKSSDFVYARKLFDEIPQPDVIAR 82

Query: 85  NICLRGLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
              +       NL  A ++F+E P    D V +N+MI+GY+       A+E+F  M+   
Sbjct: 83  TTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWAN 142

Query: 143 VRPSGFTFSILLSTVSSACHGK----QIHGSMIRSGLSLSNVVLG--------------- 183
            +P  FTF+ +LS  +   + +    Q+HG++++ G+ +   VL                
Sbjct: 143 FQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLV 202

Query: 184 ------------------------NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
                                    +LI  Y + G L  A  +   M E   I+WN++IS
Sbjct: 203 SSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMIS 262

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV----------- 268
           G  + G  E AL  F  MR  G   DE T + VI+AC        GKQV           
Sbjct: 263 GYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNP 322

Query: 269 ---FALSV---------KVGFLSNS------------IVLSATIDLFSKCNRLEDSVRLF 304
              F LSV         K G +  +            I  +  +  +    R+E++   F
Sbjct: 323 DRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFF 382

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVE 363
            Q+   +     VMIS   + GFGE AL+LF  M  +   P ++  +  +++  +   +E
Sbjct: 383 AQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALE 442

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
           +G Q H+  +  G DS   V ++++ MYA+ G ++++  +F+ +   D VSWN+++  L 
Sbjct: 443 NGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALG 502

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           Q+G   + ++++E++L+EG+ PDR T   VL AC++ G V++G   F++M E YG+ PGE
Sbjct: 503 QHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGE 562

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           +HYA +IDL C+AG+   A ++  +MPF+    IWE++L     +G++ L    AE++  
Sbjct: 563 DHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFK 622

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L       Y LL+  YA  GRW  + R +K+MR  G+ K   CSW  ++N+++ F   + 
Sbjct: 623 LIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDT 682

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H     IY  L  L  EM+  G +
Sbjct: 683 VHPEVLSIYNYLEKLNLEMKKIGYI 707



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 227/486 (46%), Gaps = 51/486 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++ A+      ++ S L    L F        +HG + K G      + N  L +Y +  
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCA 197

Query: 65  TSD---------DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSW 115
           +S             +LFDE+P++N   W   + G +++ +L  A ++ D + E   ++W
Sbjct: 198 SSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAW 257

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIR 172
           N+MISGY   G  + AL +F KM+L GV+    T++ ++S  +       GKQ+H  +++
Sbjct: 258 NAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK 317

Query: 173 SGLSLSNVVL---GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS----- 224
           + L+     L   GN+LI +Y K G +  A  +F  M   DII+WN+L+SG  N+     
Sbjct: 318 NELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEE 377

Query: 225 --------------------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
                                     G+GE AL  F  M+  GY P++Y  +  I AC+ 
Sbjct: 378 AKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSV 437

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L  L+ G+Q+ A  V +G  S   V +A I ++++C  +E +  +F  +   D    N M
Sbjct: 438 LGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSM 497

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSG 376
           I+  G++G G  A+EL++ ML+E I P   T   VLS+      VE G++ F+SM    G
Sbjct: 498 IAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYG 557

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
                   + +++++ + G    +  +   +  + R  + W  ++ G   +G     ++ 
Sbjct: 558 IAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPI-WEALLAGCRTHGNMDLGIEA 616

Query: 435 FEELLE 440
            E+L +
Sbjct: 617 AEKLFK 622



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 173/337 (51%), Gaps = 14/337 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT----YLGNRCLDLYSRFGTSDDVLQLFD 74
           + +I  C     F   K +H ++ K   N        +GN  + LY ++G  D   ++F 
Sbjct: 293 TSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFY 352

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           E+P K+ I+WN  L G + +  ++ A   F ++PE ++++W  MISG A  G+ + AL++
Sbjct: 353 EMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKL 412

Query: 135 FSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F++M+L G  P+ + F+  ++  S   +  +G+Q+H  ++  G   S + +GN++I MY 
Sbjct: 413 FNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHD-STLSVGNAMITMYA 471

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G++  A  +FL M  +D +SWNS+I+     G+G  A++ +  M   G  PD  T   
Sbjct: 472 RCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLT 531

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           V++AC+    +++G + F ++    G        +  IDLF +  +  D+  + + +   
Sbjct: 532 VLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFE 591

Query: 311 DYAVINVMI----STYGRYGFG-EVALELFQLMLRED 342
             A I   +     T+G    G E A +LF+L+ + D
Sbjct: 592 ARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 298/561 (53%), Gaps = 20/561 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K    + A ++F  +   D+V+W+++I+     GY + AL +F +MQ Q ++P+  T   
Sbjct: 376 KCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVT--- 432

Query: 153 LLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            L ++  AC        GK IH   +++ +  S++  G +L+ MY K G    A   F  
Sbjct: 433 -LMSILPACADLSLLKLGKSIHCFTVKADMD-SDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   DI++WNSLI+G    G    A+D FY +R S  +PD  T+  V+ AC  L +LD+G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGR 324
             +  L VK+GF S+  V +A ID+++KC  L  +  LF + D   D    NV+I+ Y +
Sbjct: 551 TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  + A+  F  M  E+  P   T   VL +   +     G  FH+  I+ GF SN +V
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +SL++MYAK G +D S ++F ++D +D VSWN ++ G   +G     + +F  + E  +
Sbjct: 671 GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D ++  +VL AC + G V++G  +F +M ++Y + P  EHYAC++DLL +AG   + +
Sbjct: 731 QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
                MP +P   +W ++L +  ++ +VKL E   + ++ L+  +P  + +L+  YA  G
Sbjct: 791 GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RW    + +  M   G+ K  GCSW+ +KN+++ F  G+  H   + ++L+   L  +ME
Sbjct: 851 RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 624 ------DEGCVYLECDKLDVE 638
                 D  CV    ++ D E
Sbjct: 911 KIGYVPDRSCVLQNVEEEDKE 931



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 193/364 (53%), Gaps = 7/364 (1%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           D A  VFD  P P  + WNSMI  Y      + ALEM+  M  +G+ P  +TF+ +L   
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + A +   G   HG + R GL   +V +G  L+DMY K+G L  A  VF  M + D+++W
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLE-RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 198

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++I+G   S     A+D F SM+  G  P   ++  +     KL N++  + +     +
Sbjct: 199 NAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR 258

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
             F  +S V +  IDL+SKC  ++ + R+F+Q+   D      M++ Y   G     LEL
Sbjct: 259 RDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLEL 316

Query: 335 FQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M   ++R  + + +S  L++     +E G + H  A++   DS+ +VA+ LM MYAK
Sbjct: 317 FDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G  + + ++F  L  RDLV+W+ I+  L Q G   E L +F+E+  + + P+R+TL ++
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 454 LLAC 457
           L AC
Sbjct: 437 LPAC 440



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 248/505 (49%), Gaps = 41/505 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + +  ++IHG++F+  F+  + + N  +DLYS+ G                         
Sbjct: 245 NIELCRSIHGYVFRRDFS--SAVSNGLIDLYSKCG------------------------- 277

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                 ++D A +VFD++ + D VSW +M++GYA  G     LE+F KM+L  VR +  +
Sbjct: 278 ------DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 150 -FSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
             S  L+   +     GK+IHG  ++  +  S++++   L+ MY K G    A  +F  +
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRID-SDILVATPLMVMYAKCGETEKAKQLFWGL 390

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +  D+++W+++I+    +GY E AL  F  M+     P+  T+  ++ AC  L  L  GK
Sbjct: 391 QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +   +VK    S+    +A + +++KC     ++  F ++   D    N +I+ Y + G
Sbjct: 451 SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               A+++F  +    I P   T+  V+ +   +  ++ G+  H + +K GF+S+  V +
Sbjct: 511 DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +L++MYAK GS+ S+  +F K D  +D V+WN I+    QNG A E +  F ++  E   
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 630

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T  +VL A  Y     +GM  F A   + G +        +ID+  + GQL  +  
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGM-AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 689

Query: 505 ITSTMPFQPGCSIWESILRASAIYG 529
           + + M  +   S W ++L   A++G
Sbjct: 690 LFNEMDHKDTVS-WNAMLSGYAVHG 713



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 228/499 (45%), Gaps = 39/499 (7%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           HG + + G     ++G   +D+YS+ G                               +L
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMG-------------------------------DL 180

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
             A +VFD++P+ DVV+WN+MI+G +       A++ F  MQL GV PS  +   L   +
Sbjct: 181 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGI 240

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
               +    + IHG + R   S +   + N LID+Y K G +  A  VF  M + D +SW
Sbjct: 241 CKLSNIELCRSIHGYVFRRDFSSA---VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSW 297

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            ++++G  ++G     L+ F  M+      ++ +      A  +  +L+KGK++   +++
Sbjct: 298 GTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ 357

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
               S+ +V +  + +++KC   E + +LF  L   D    + +I+   + G+ E AL L
Sbjct: 358 QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           FQ M  + ++P   TL  +L +   +  ++ G   H   +K+  DS+    ++L+ MYAK
Sbjct: 418 FQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAK 477

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G   ++   F ++  RD+V+WN+++ G  Q G     +D+F +L    + PD  T+  V
Sbjct: 478 CGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGV 537

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           + AC     +D+G  +   +  + G          +ID+  + G L  A  + +   F  
Sbjct: 538 VPACALLNDLDQGTCI-HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTK 596

Query: 514 GCSIWESILRASAIYGDVK 532
               W  I+ A    G  K
Sbjct: 597 DEVTWNVIIAAYMQNGHAK 615



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           QIH  +I SG    + +    LI++Y        A  VF +      I WNS+I     S
Sbjct: 50  QIHAQIIVSGFKHHHSI--THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRS 107

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                AL+ +Y M   G  PD+YT + V+ ACT   NL +G        + G   +  + 
Sbjct: 108 KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIG 167

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +  +D++SK   L+ +  +F+++ + D    N MI+   +      A++ F+ M    + 
Sbjct: 168 AGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVE 227

Query: 345 PTEFTL------SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
           P+  +L       C LS+I +    HG  F         D ++ V++ L+++Y+K G +D
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFRR-------DFSSAVSNGLIDLYSKCGDVD 280

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F ++  +D VSW T+M G   NG   E L++F+++    +  ++++  +  LA  
Sbjct: 281 VARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAA 340

Query: 459 YGGFVDKG 466
               ++KG
Sbjct: 341 ETIDLEKG 348



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 189/430 (43%), Gaps = 47/430 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP-QK 79
           ++  C      D    IHG + KLGF +  ++ N  +D+Y++ G+      LF++    K
Sbjct: 537 VVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTK 596

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + ++WN+                               +I+ Y   G++  A+  F +M+
Sbjct: 597 DEVTWNV-------------------------------IIAAYMQNGHAKEAISSFHQMR 625

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           L+   P+  TF  +L     +++   G   H  +I+ G  LSN ++GNSLIDMY K G L
Sbjct: 626 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF-LSNTLVGNSLIDMYAKCGQL 684

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            Y+  +F  M+  D +SWN+++SG    G+G+ A+  F  M+ S    D  +   V++AC
Sbjct: 685 DYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC 744

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAV 314
                +++G+++F ++S K     +    +  +DL  +    ++++   + +    D  V
Sbjct: 745 RHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGV 804

Query: 315 INVMIST---YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSM 371
              ++ +   +     GEVAL+   L+  E   P  F    VLSSI            + 
Sbjct: 805 WGALLGSCRMHSNVKLGEVALD--HLVKLEPRNPAHFV---VLSSIYAQSGRWADAGKAR 859

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           +  +          S +E+  K  +     +   +L+   L+ WNT++  + + G   + 
Sbjct: 860 SKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL-WNTLLEKMEKIGYVPDR 918

Query: 432 LDVFEELLEE 441
             V + + EE
Sbjct: 919 SCVLQNVEEE 928


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 281/502 (55%), Gaps = 7/502 (1%)

Query: 131  ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
            ALE F +M   G +P+ F     L++ +   +   G QIH  +I++G    N+ L ++L+
Sbjct: 1300 ALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFE-DNLFLNSALV 1358

Query: 188  DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            D+Y K   +  A  VF  ME+ D +SW S+ISG   +G G+ A+  F  M  S   P+  
Sbjct: 1359 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 1418

Query: 248  TISIVINACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T    I+ACT L  + D+   + A  VK+GF   + V+S  ID +SKC R++ +V LF  
Sbjct: 1419 TYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGT 1478

Query: 307  LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHG 365
                D  + N MIS Y +   GE AL+LF  M    + PT+ TL+ +L++   +  ++ G
Sbjct: 1479 TIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQG 1538

Query: 366  SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
             Q HS+  K G +SN  V S+L++MY+K GSID +  +F +  +++ V W +++ G  Q+
Sbjct: 1539 RQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQS 1598

Query: 426  GRAAETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
            GR  E L +FE L+ EEG  PD I   AVL ACN+ GF+DKG+  F+ M+ +YG++P  +
Sbjct: 1599 GRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLD 1658

Query: 485  HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
             YAC++DL  + G L KA ++    P +P   +W S L +  +YG+ +L    A+++  +
Sbjct: 1659 QYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREAADKLFKM 1718

Query: 545  QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
            +  S  PY  +   YA  G W  +V ++K+M++ G+ K  G SW+ +  R++ F   +  
Sbjct: 1719 EPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEVDKRVHVFXVADAS 1778

Query: 605  HHGGQKIYLVLRLLTWEMEDEG 626
            H   + I + L  L  EM++ G
Sbjct: 1779 HPRSRDICVELERLNLEMKEVG 1800



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 183/394 (46%), Gaps = 47/394 (11%)

Query: 22   IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
            ++ C    ++     IH  + + GF  + +L +  +DLY++     D  ++FD       
Sbjct: 1323 LNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFD------- 1375

Query: 82   ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                    G+ K D                 VSW S+ISG++  G    A+  F +M   
Sbjct: 1376 --------GMEKHDQ----------------VSWTSIISGFSKNGRGKEAILFFKEMLGS 1411

Query: 142  GVRPSGFTFSILLSTVSSACHGKQ--------IHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             ++P+  T+   +    SAC G +        +H  +++ G  +   V+ + LID Y K 
Sbjct: 1412 QIKPNCVTYVSXI----SACTGLETIFDQCALLHAHVVKLGFGVKTFVV-SCLIDCYSKC 1466

Query: 194  GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            G +  A  +F    E D I +NS+ISG   +  GE AL  F  MR +G  P ++T++ ++
Sbjct: 1467 GRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSIL 1526

Query: 254  NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            NAC  L  L +G+QV +L  K+G  SN  V+SA +D++SKC  ++++  +F Q    +  
Sbjct: 1527 NACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTV 1586

Query: 314  VINVMISTYGRYGFGEVALELFQ-LMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHS 370
            +   MI+ Y + G G   L LF+ L+  E   P     + VL++      ++ G   F+ 
Sbjct: 1587 LWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQ 1646

Query: 371  MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            M    G   +    + L+++Y + G +  + E+ 
Sbjct: 1647 MRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELM 1680



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 49/332 (14%)

Query: 19   SQLIDRCLSFKS-----------FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
            SQ+   C+++ S           FD    +H H+ KLGF   T++ +  +D YS+ G   
Sbjct: 1411 SQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCG--- 1467

Query: 68   DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
                                         +D A+ +F    E D + +NSMISGY+    
Sbjct: 1468 ----------------------------RIDQAVLLFGTTIERDNILFNSMISGYSQNLX 1499

Query: 128  SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGN 184
             + AL++F +M+  G+ P+  T + +L+   S      G+Q+H  + + G S SNV + +
Sbjct: 1500 GEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMG-SESNVFVVS 1558

Query: 185  SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYS 243
            +L+DMY K G +  A  VF    E + + W S+I+G   SG G   L  F  +    G++
Sbjct: 1559 ALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFT 1618

Query: 244  PDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
            PD    + V+ AC     LDKG   F  +    G + +    +  +DL+ +   L  +  
Sbjct: 1619 PDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKE 1678

Query: 303  LFEQLDRWDYAVI-NVMISTYGRYGFGEVALE 333
            L E       +V+    +S+   YG  E+  E
Sbjct: 1679 LMEAXPXEPNSVMWGSFLSSCKLYGEAELGRE 1710


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/612 (30%), Positives = 317/612 (51%), Gaps = 45/612 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C       + K +H H+ K GF     + +  + +Y++    +D            
Sbjct: 304 VLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFED------------ 351

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A+K+FDE+PE DV SWN++IS Y   G  + ALE+F +M++
Sbjct: 352 -------------------AIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 141 QGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            G +P     S+ L+TV S+C        GK+IH  ++RSG +L   V  ++L+DMYGK 
Sbjct: 393 SGFKPD----SVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV-SSALVDMYGKC 447

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  VF  ++  +++SWNS+I+G    G  +  ++ F  M   G  P   T+S ++
Sbjct: 448 GCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSIL 507

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC++  NL  GK +    ++    ++  V S+ IDL+ KC  +  +  +F+ + + +  
Sbjct: 508 MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVV 567

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
             NVMIS Y + G    AL +F  M +  ++P   T + VL +   +  +E G + H+  
Sbjct: 568 SWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFI 627

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           I+S  + N VV  +L++MYAK G++D +  IF +L +RD VSW +++     +G+A E L
Sbjct: 628 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 687

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +FE++ +    PD++T  A+L AC++ G VD+G   F+ M  EYG  P  EHY+C+IDL
Sbjct: 688 KLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDL 747

Query: 493 LCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           L + G+L +A +I    P  +    +  ++  A  ++  + L E +   +++     P  
Sbjct: 748 LGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPST 807

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y +L+  YA   +W+ + +V+  +++ G+ K  GCSWI +  RI+ F   +  H     I
Sbjct: 808 YIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMI 867

Query: 612 YLVLRLLTWEME 623
           Y  + +L   +E
Sbjct: 868 YECMSILASHVE 879



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 240/451 (53%), Gaps = 9/451 (1%)

Query: 97  LDTALKVFDEIPEP-DVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILL 154
             +A  VF  I  P D+  WN +++           LE+F ++     ++P  FT+  +L
Sbjct: 246 FQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVL 305

Query: 155 STVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S      +GK +H  +I+SG ++ +VV+ +S + MY K  V   A  +F  M E D+
Sbjct: 306 KACSGLGRVGYGKMVHTHVIKSGFAM-DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDV 364

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWN++IS  +  G  E AL+ F  M+ SG+ PD  T++ VI++C +L +L++GK++   
Sbjct: 365 ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHME 424

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            V+ GF  +  V SA +D++ KC  LE +  +FEQ+ R +    N MI+ Y   G  +  
Sbjct: 425 LVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSC 484

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           +ELF+ M  E IRPT  TLS +L +      ++ G   H   I++  +++  V SSL+++
Sbjct: 485 IELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDL 544

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G+I S+  +F  + K ++VSWN ++ G  + G   E L +F ++ + G+ PD IT 
Sbjct: 545 YFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 604

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            +VL AC+    ++KG  + + + E   +   E     ++D+  + G + +A+ I + +P
Sbjct: 605 TSVLPACSQLAVLEKGKEIHNFIIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 663

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +   S W S++ A   +G       + E+M
Sbjct: 664 ERDFVS-WTSMIAAYGSHGQAFEALKLFEKM 693



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 40/352 (11%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           + +L+  S ++  C    +    K IHG++ +    A  ++ +  +DLY + G       
Sbjct: 497 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 556

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  +P+ N +SWN+                               MISGY   G    A
Sbjct: 557 VFQNMPKTNVVSWNV-------------------------------MISGYVKVGSYLEA 585

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L +F+ M+  GV+P   TF+ +L   S       GK+IH  +I S L ++ VV+G +L+D
Sbjct: 586 LVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMG-ALLD 644

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  +F  + E D +SW S+I+   + G    AL  F  M+ S   PD+ T
Sbjct: 645 MYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVT 704

Query: 249 ISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              +++AC+    +D+G   F  +  + GF       S  IDL  +  RL ++  + ++ 
Sbjct: 705 FLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRT 764

Query: 308 D--RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
              R D  +++ + S    +   ++  ++ +L++ +D  P + +   +LS++
Sbjct: 765 PDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKD--PDDPSTYIILSNM 814


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/604 (29%), Positives = 327/604 (54%), Gaps = 37/604 (6%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F+S +    +HGH+ K+G+++   + N  LD Y                           
Sbjct: 152 FESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYC-------------------------- 185

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                K+ +L  A  +F  + E D V++N++++GY+  G++  A+ +F KMQ  G RPS 
Sbjct: 186 -----KTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSE 240

Query: 148 FTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTF+ +L+    +     G+Q+H  +++    + NV + N+L+D Y K   +  A  +F 
Sbjct: 241 FTFAAVLTAGIQMDDIEFGQQVHSFVVKCNF-VWNVFVANALLDFYSKHDRIVEARKLFY 299

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M E+D IS+N LI+ C  +G  E +L+ F  ++++ +   ++  + +++      NL+ 
Sbjct: 300 EMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEM 359

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+Q+ + ++    +S  +V ++ +D+++KC++  ++ R+F  L          +IS Y +
Sbjct: 360 GRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQ 419

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  E  L+LF  M R  I     T + +L +   +  +  G Q HS  I+SG  SN   
Sbjct: 420 KGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFS 479

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L++MYAK GSI  + ++F ++  R+ VSWN ++    QNG     L  FE+++  GL
Sbjct: 480 GSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGL 539

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P+ ++  ++L AC++ G V++G+  F++M + Y + P  EHYA ++D+LC++G+  +A 
Sbjct: 540 QPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAE 599

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMR 562
            + + MPF+P   +W SIL +  I+ + +L    A+++ +++ L    PY  ++  YA  
Sbjct: 600 KLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAA 659

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G W+++ +VKK +R+ GI KV   SW+ IK + + F+A +  H   ++I   L  L  +M
Sbjct: 660 GEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQM 719

Query: 623 EDEG 626
           E++G
Sbjct: 720 EEQG 723



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 251/494 (50%), Gaps = 7/494 (1%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           + K GF+ +T   N  +  + + G      +LFDE+P KN IS N  + G LKS NL TA
Sbjct: 33  MIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTA 92

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-- 158
             +FD + +  VV+W  +I GYA       A  +F+ M   G+ P   T + LLS  +  
Sbjct: 93  RSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEF 152

Query: 159 -SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
            S     Q+HG +++ G   S +++ NSL+D Y K   L  A  +F +M E D +++N+L
Sbjct: 153 ESVNEVAQVHGHVVKVGYD-STLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNAL 211

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           ++G    G+   A++ F+ M+  G+ P E+T + V+ A  ++ +++ G+QV +  VK  F
Sbjct: 212 LTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNF 271

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
           + N  V +A +D +SK +R+ ++ +LF ++   D    NV+I+     G  E +LELF+ 
Sbjct: 272 VWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRE 331

Query: 338 MLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           +        +F  + +LS +     +E G Q HS AI +   S  +V +SL++MYAK   
Sbjct: 332 LQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDK 391

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
              +  IF  L  +  V W  ++ G  Q G   + L +F E+    +  D  T A++L A
Sbjct: 392 FGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRA 451

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C     +  G  + S +    G +      + ++D+  + G + +A+ +   MP +   S
Sbjct: 452 CANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVS 510

Query: 517 IWESILRASAIYGD 530
            W +++ A A  GD
Sbjct: 511 -WNALISAYAQNGD 523



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 55/249 (22%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + +A +   S +Y S ++  C +  S    K +H  + + G  ++ + G+  +D+Y++ G
Sbjct: 433 MHRAKIGADSATYAS-ILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCG 491

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +  + LQ+F E+P +N +SW                               N++IS YA 
Sbjct: 492 SIKEALQMFQEMPVRNSVSW-------------------------------NALISAYAQ 520

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG- 183
            G   +AL  F +M   G++P+  +F  +L   S        H  ++  GL   N +   
Sbjct: 521 NGDGGHALRSFEQMIHSGLQPNSVSFLSILCACS--------HCGLVEEGLQYFNSMTQV 572

Query: 184 ----------NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELAL- 231
                      S++DM  + G    A  +   M  E D I W+S+++ C      ELA+ 
Sbjct: 573 YKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIK 632

Query: 232 --DQFYSMR 238
             DQ ++M+
Sbjct: 633 AADQLFNMK 641



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 31/125 (24%)

Query: 361 PVEHGSQFHSMAIKSGFDSNA------------------------------VVASSLMEM 390
           P  H     +  IK+GFD N                               V++++ M M
Sbjct: 22  PKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIM 81

Query: 391 -YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            Y K+G++ ++  +F  + +R +V+W  ++ G  Q+ R  E  ++F ++   G+ PD IT
Sbjct: 82  GYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHIT 141

Query: 450 LAAVL 454
           LA +L
Sbjct: 142 LATLL 146


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/612 (30%), Positives = 310/612 (50%), Gaps = 40/612 (6%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C    S    K IH    K  F    Y+ N  L++YS  G+                
Sbjct: 262 VQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGS---------------- 305

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                          L+++ ++F+ +P  D   WNSMIS YA+ G  + A+++F +MQ +
Sbjct: 306 ---------------LESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSE 350

Query: 142 GVRPSGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           GV+    T  I+LS      S    GK +H  +I+SG+ + +  LGN+L+ MY +L  + 
Sbjct: 351 GVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRI-DASLGNALLSMYTELNCVE 409

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               +F  M+ +DIISWN++I     +     A + F  MR S   P+ YTI  ++ AC 
Sbjct: 410 SVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACE 469

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  LD G+ +    +K     N  + +A  D++  C     +  LFE     D    N 
Sbjct: 470 DVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNA 529

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MI++Y +      AL LF  M+ E   P   T+  VLSS   +  +  G   H+   + G
Sbjct: 530 MIASYVKNNQAHKALLLFHRMISE-AEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRG 588

Query: 377 FDS--NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           F    +  +A++ + MYA+ GS+ S+  IF  L KR+++SWN ++ G   NGR ++ +  
Sbjct: 589 FSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLA 648

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F ++LE+G  P+ +T  +VL AC++ GF++ G+ +F +M +++ V P   HY+CI+DLL 
Sbjct: 649 FSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLA 708

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G + +A +   +MP +P  S+W ++L +   Y D K  + + E++  L+  +   Y L
Sbjct: 709 RGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVL 768

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA  G W  + R++  +++ G+ K  G SWI +KN+++ F+AG+  H    KIY  
Sbjct: 769 LSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAK 828

Query: 615 LRLLTWEMEDEG 626
           L +L   M + G
Sbjct: 829 LSILLSSMRETG 840



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 196/366 (53%), Gaps = 6/366 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           ++ A  VFD + + DVV WN+M+ GY   G  + A+ +  +M  + +RP+  T   LL  
Sbjct: 104 VEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLA 163

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              A     G+ +HG  +R+G+  SN  +  +LI  Y +  +      +F  M   +I+S
Sbjct: 164 CEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVS 222

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN++ISG ++ G    AL+ F  M       D  T+ + + AC +L +L  GKQ+  L++
Sbjct: 223 WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAI 282

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F+ +  +L+A ++++S    LE S +LFE +   D  + N MIS Y  +G  E A++
Sbjct: 283 KFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMD 342

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP--IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           LF  M  E ++  E T+  +LS        +  G   H+  IKSG   +A + ++L+ MY
Sbjct: 343 LFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMY 402

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            +   ++S  +IF ++   D++SWNT+++ L +N   A+  ++FE + E  + P+  T+ 
Sbjct: 403 TELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTII 462

Query: 452 AVLLAC 457
           ++L AC
Sbjct: 463 SILAAC 468



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 188/432 (43%), Gaps = 47/432 (10%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C +L    L        K++H H+ K G      LGN  L +Y+     + V ++FD
Sbjct: 363 LSMCEELASGLLK------GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFD 416

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +   + ISW                               N+MI   A       A E+
Sbjct: 417 RMKGVDIISW-------------------------------NTMILALARNTLRAQACEL 445

Query: 135 FSKMQLQGVRPSGFT-FSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M+   ++P+ +T  SIL +     C   G+ IHG +++  + + N  L  +L DMY 
Sbjct: 446 FERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEI-NQPLRTALADMYM 504

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
             G    A  +F    + D+ISWN++I+    +     AL  F+ M  S   P+  TI  
Sbjct: 505 NCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRM-ISEAEPNSVTIIN 563

Query: 252 VINACTKLRNLDKGKQVFALSVKVGF-LSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDR 309
           V+++ T L  L +G+ + A   + GF L   + L+ A I ++++C  L+ +  +F+ L +
Sbjct: 564 VLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPK 623

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ- 367
            +    N MI+ YG  G G  A+  F  ML +  RP   T   VLS+      +E G Q 
Sbjct: 624 RNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQL 683

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNG 426
           FHSM          V  S ++++ A+ G ID + E    +  + D   W  ++       
Sbjct: 684 FHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYS 743

Query: 427 RAAETLDVFEEL 438
            A +   +FE+L
Sbjct: 744 DAKQAKTIFEKL 755



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---H 162
           +I +P    WNS+I   A+       L  +++M+  GV P+  T  ++L   ++      
Sbjct: 14  QIKDPK--HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK IH S+  + L + +V +G +++D Y K G +  A  VF  M + D++ WN+++ G  
Sbjct: 72  GKSIHRSIQGTDL-MDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYV 130

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNS 281
             G  E A+     M      P+  T+  ++ AC     L  G+ V    ++ G F SN 
Sbjct: 131 GWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP 190

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A I  + + + +     LF+ +   +    N MIS Y   G    ALELF  ML +
Sbjct: 191 HVATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVD 249

Query: 342 DIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           +++    T L  V +   +  ++ G Q H +AIK  F  +  + ++L+ MY+  GS++SS
Sbjct: 250 EVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESS 309

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            ++F  +  RD   WN+++      G   E +D+F  +  EG+  D  T+  +L  C
Sbjct: 310 HQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 155/325 (47%), Gaps = 11/325 (3%)

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D   WNS+I    N    +  L  +  M   G  P+  T+ +V+ AC     +++GK + 
Sbjct: 17  DPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIH 76

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
                   + +  V +A +D + KC  +ED+  +F+ +   D  + N M+  Y  +G  E
Sbjct: 77  RSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYE 136

Query: 330 VALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSG-FDSNAVVASSL 387
            A+ L + M RE++RP   T+ + +L+      +  G   H   +++G FDSN  VA++L
Sbjct: 137 EAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATAL 196

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +  Y +   +     +F  +  R++VSWN ++ G    G   + L++F ++L + +  D 
Sbjct: 197 IGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDC 255

Query: 448 ITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYA--CIIDLLCQAGQLGKAID 504
           +T+   + AC   G +  G  +   A+K E+     E+ Y    ++++    G L  +  
Sbjct: 256 VTMLVAVQACAELGSLKLGKQIHQLAIKFEF----VEDLYILNALLNMYSNNGSLESSHQ 311

Query: 505 ITSTMPFQPGCSIWESILRASAIYG 529
           +  ++P +    +W S++ A A +G
Sbjct: 312 LFESVPNRDA-PLWNSMISAYAAFG 335


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/640 (30%), Positives = 333/640 (52%), Gaps = 38/640 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK---NC 81
           C    S+      HG +   GF ++ ++ N  + +YSR G+ +D   +FDEI +K   + 
Sbjct: 159 CGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDV 218

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIP----------EPDVVSWNSMISGYASCGYSDYA 131
           ISWN  +   +K  N  TAL +F E+             D++S  +++   AS       
Sbjct: 219 ISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQT 278

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            E+ S     G     F  + L+ T +    G       + + +   +VV  N+++  Y 
Sbjct: 279 KEIHSYAIRNGTFADAFVCNALIDTYAKC--GSMKDAVNVFNVMEFKDVVSWNAMVTGYT 336

Query: 192 KLGVLYYAFGVFLNMEE----LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           + G    AF +F NM +    LD+I+W+++I+G    GYG+ ALD F  M   G  P+  
Sbjct: 337 QSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSV 396

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLS------------NSIVLSATIDLFSKCN 295
           TI  +++AC  L  L +G +  A S+K   LS            + +V +A ID++SKC 
Sbjct: 397 TIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCR 456

Query: 296 RLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLS 351
             + +  +F  + R +  V+   VMI  Y +YG    AL+LF  M+ +   + P  +T+S
Sbjct: 457 SFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTIS 516

Query: 352 CVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV--VASSLMEMYAKTGSIDSSTEIFVKLD 408
           C+L +   +  +  G Q H+   +     ++V  VA+ L++MY+K G +D++  +F  + 
Sbjct: 517 CILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP 576

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           KR+ VSW ++M G   +GR  E LD+F+++ + G  PD I+   +L AC++ G VD+G+ 
Sbjct: 577 KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLD 636

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F  M+ +YGV+   +HYAC+IDLL ++G+L KA      MP +P  +IW ++L A  ++
Sbjct: 637 YFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVH 696

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
            +V+L E    +++ ++  +   Y+L++  YA   RW+ + R++++M+K+GI K  GCSW
Sbjct: 697 SNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSW 756

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           +  K    +F  G+  H    +IY +L  L   ++  G V
Sbjct: 757 VQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYV 796



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 207/425 (48%), Gaps = 34/425 (8%)

Query: 6   KKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT 65
           +KA   ++ +     ++  C S K+    K IH +  + G  A  ++ N  +D Y++ G+
Sbjct: 250 EKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGS 309

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP----DVVSWNSMISG 121
             D + +F+ +  K+ +SWN  + G  +S     A ++F  + +     DV++W+++I+G
Sbjct: 310 MKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAG 369

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHG-SMIRSGLSL 177
           YA  GY   AL+ F +M L G  P+  T   LLS  +S      G + H  S+ +  LSL
Sbjct: 370 YAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSL 429

Query: 178 ----------SNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSG 225
                      ++V+ N+LIDMY K      A  +F  +   E ++++W  +I G    G
Sbjct: 430 DNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYG 489

Query: 226 YGELALDQFYSMRYSGY--SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI- 282
               AL  F  M    Y  +P+ YTIS ++ AC  L +L  GKQ+ A   +     +S+ 
Sbjct: 490 DSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVY 549

Query: 283 -VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +  ID++SKC  ++ +  +F+ + + +      M+S YG +G G+ AL++F  M + 
Sbjct: 550 FVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA 609

Query: 342 DIRPTEFTL-----SCVLSSIPIPPVEHG-SQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
              P + +      +C  S +    V+ G   F  M    G  ++A   + ++++ A++G
Sbjct: 610 GFVPDDISFLVLLYACSHSGM----VDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSG 665

Query: 396 SIDSS 400
            +D +
Sbjct: 666 RLDKA 670



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/545 (22%), Positives = 243/545 (44%), Gaps = 68/545 (12%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST--- 156
           AL V + +     V WN ++  +   G  D A+ +  +M   G +P  FT    L     
Sbjct: 102 ALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGE 161

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---DIIS 213
           + S   G   HG +  +G   SNV + N+L+ MY + G L  A  VF  +      D+IS
Sbjct: 162 LPSYRSGSAFHGLICCNGFE-SNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVIS 220

Query: 214 WNSLISGCFNSGYGELALDQFYSM------RYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           WNS+++          ALD F  M      + +    D  +I  ++ AC  L+ L + K+
Sbjct: 221 WNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKE 280

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM--------- 318
           + + +++ G  +++ V +A ID ++KC  ++D+V +F  ++  D    N M         
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGK 340

Query: 319 --------------------------ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
                                     I+ Y + G+G+ AL+ FQ M+     P   T+  
Sbjct: 341 FGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIIS 400

Query: 353 VLSSIP-IPPVEHGSQFHSMAIKSGFDS------------NAVVASSLMEMYAKTGSIDS 399
           +LS+   +  +  G + H+ ++K    S            + VV ++L++MY+K  S  +
Sbjct: 401 LLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKA 460

Query: 400 STEIFVKLDKRD--LVSWNTIMMGLTQNGRAAETLDVFEELLEE--GLPPDRITLAAVLL 455
           +  IF  + +R+  +V+W  ++ G  Q G + + L +F E++ +   + P+  T++ +L+
Sbjct: 461 ARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILM 520

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQPG 514
           AC +   +  G  + + +   +         A C+ID+  + G +  A ++  +MP +  
Sbjct: 521 ACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNE 580

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
            S W S++    ++G  K   ++ ++M     +P  + + +L  A +  G  +  +    
Sbjct: 581 VS-WTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFD 639

Query: 574 VMRKN 578
           +MR +
Sbjct: 640 IMRSD 644



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 39/383 (10%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGL-------------------SLSNVVLGNSLIDMY 190
           F+ LL    S    +QIH  +I  GL                    +S   LG  ++  Y
Sbjct: 34  FASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASY 93

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
              G    A  V   +     + WN L+      G  + A+     M  +G  PD +T+ 
Sbjct: 94  LACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLP 153

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
             + AC +L +   G     L    GF SN  V +A + ++S+   LED+  +F+++ R 
Sbjct: 154 YALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRK 213

Query: 311 ---DYAVINVMISTYGRYGFGEVALELFQLML----------REDIRPTEFTLSCVLSSI 357
              D    N +++ + +      AL+LF  M           R DI      L    S  
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +P  +   + HS AI++G  ++A V ++L++ YAK GS+  +  +F  ++ +D+VSWN 
Sbjct: 274 ALPQTK---EIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNA 330

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G TQ+G+     ++F+ + +E +P D IT +AV+      G+  + +  F  M   Y
Sbjct: 331 MVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI-LY 389

Query: 478 GVMPGEEHYACIIDLLCQAGQLG 500
           G  P       II LL     LG
Sbjct: 390 GSEPNS---VTIISLLSACASLG 409


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 189/611 (30%), Positives = 317/611 (51%), Gaps = 38/611 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C S       K +H  + KL  ++H    N  + +Y RF    D            
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSD------------ 221

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A +VF  IP  D++SW+S+I+G++  G+   AL    +M  
Sbjct: 222 -------------------ASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLS 262

Query: 141 QGV-RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            GV  P+ + F   L   SS     +G QIHG  I+S L+  N + G SL DMY + G L
Sbjct: 263 FGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELA-GNAIAGCSLCDMYARCGFL 321

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  +E  D  SWN +I+G  N+GY + A+  F  MR SG+ PD  ++  ++ A 
Sbjct: 322 NSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQ 381

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
           TK   L +G Q+ +  +K GFL++  V ++ + +++ C+ L     LFE   +  D    
Sbjct: 382 TKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSW 441

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIK 374
           N +++   ++      L LF+LML  +  P   T+  +L   + I  ++ GSQ H  ++K
Sbjct: 442 NTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLK 501

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      + + L++MYAK GS+  +  IF  +D RD+VSW+T+++G  Q+G   E L +
Sbjct: 502 TGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALIL 561

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+E+   G+ P+ +T   VL AC++ G V++G+ +++ M+ E+G+ P +EH +C++DLL 
Sbjct: 562 FKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLA 621

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A      M  +P   +W+++L A    G+V L +  AE ++ +   +   + L
Sbjct: 622 RAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVL 681

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   +A  G WE    ++  M+K+ + K+ G SWI I+++I+ F A ++ H     IY V
Sbjct: 682 LCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTV 741

Query: 615 LRLLTWEMEDE 625
           L  +  +M DE
Sbjct: 742 LHNIWSQMLDE 752



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 228/495 (46%), Gaps = 39/495 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C S +S    + IH H+        T L N  L +Y + G+  D  ++FD +P++N
Sbjct: 73  LICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERN 132

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                          +VS+ S+I+GY+  G    A+ ++ KM  
Sbjct: 133 -------------------------------LVSYTSVITGYSQNGQGAEAIRLYLKMLQ 161

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + + P  F F  ++   +S+     GKQ+H  +I+   S S+++  N+LI MY +   + 
Sbjct: 162 EDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLE-SSSHLIAQNALIAMYVRFNQMS 220

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINAC 256
            A  VF  +   D+ISW+S+I+G    G+   AL     M   G + P+EY     + AC
Sbjct: 221 DASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKAC 280

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           + L   D G Q+  L +K     N+I   +  D++++C  L  + R+F+Q++R D A  N
Sbjct: 281 SSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWN 340

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
           V+I+     G+ + A+ +F  M      P   +L  +L +   P  +  G Q HS  IK 
Sbjct: 341 VIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKW 400

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDV 434
           GF ++  V +SL+ MY     +     +F    +  D VSWNTI+    Q+ +  E L +
Sbjct: 401 GFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRL 460

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+ +L     PD IT+  +L  C     +  G  V      + G+ P +     +ID+  
Sbjct: 461 FKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH-CYSLKTGLAPEQFIKNGLIDMYA 519

Query: 495 QAGQLGKAIDITSTM 509
           + G LG+A  I  +M
Sbjct: 520 KCGSLGQARRIFDSM 534



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 164/369 (44%), Gaps = 41/369 (11%)

Query: 215 NSLISGCFNSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           N  I+    S +   AL+ F ++ + S +     T   +I AC+  R+L +G+++    +
Sbjct: 35  NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
                 ++I+ +  + ++ KC  L D+  +F+ +   +      +I+ Y + G G  A+ 
Sbjct: 95  NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           L+  ML+ED+ P +F    ++ +      V  G Q H+  IK    S+ +  ++L+ MY 
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPDRITLA 451
           +   +  ++ +F  +  +DL+SW++I+ G +Q G   E L   +E+L  G+  P+     
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           + L AC+            S ++ +YG    + H  CI   L      G AI        
Sbjct: 275 SSLKACS------------SLLRPDYG---SQIHGLCIKSELA-----GNAI-------- 306

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMD-LQLPSPLPYSLLTQAYAMRGRWEAIVR 570
             GCS+ +   R   +        N A R+ D ++ P    ++++    A  G  +  V 
Sbjct: 307 -AGCSLCDMYARCGFL--------NSARRVFDQIERPDTASWNVIIAGLANNGYADEAVS 357

Query: 571 VKKVMRKNG 579
           V   MR +G
Sbjct: 358 VFSQMRSSG 366


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/533 (33%), Positives = 299/533 (56%), Gaps = 9/533 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A K+FD +PE ++VSW +MISGYAS   +  AL +F  M+L     + F F+ +LS +  
Sbjct: 166 ARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSAL-- 223

Query: 160 AC-----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
            C      GKQ+H  ++++G+ L  V + N+L+ MY K G L Y+  +F    + + I+W
Sbjct: 224 VCPEFVDSGKQVHCVVVKNGV-LEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITW 282

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           ++LI+G   +G    AL  F  M Y+G+ P E+T+  V+ AC+ +  +++GKQ     +K
Sbjct: 283 SALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLK 342

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G+ +     +A +D+++K     D+ + F+ L   D  +   +I+ Y + G  E AL +
Sbjct: 343 SGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSM 402

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           +  M    I P E T++ VL +   +  +E G Q H+  IK G      + S+L  MYAK
Sbjct: 403 YGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAK 462

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            GS++    IF ++ +RD+VSWN ++ GL+QNG   E L++FEE+  EG  PD IT   V
Sbjct: 463 CGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTV 522

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++ G V +G   F+ M +E+ ++P  EHYAC++D+L +AG+L +A +   +     
Sbjct: 523 LSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDH 582

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G  +W  +L A   + + +L     E++M+L       Y LL+  Y   GR   +VRV++
Sbjct: 583 GMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRR 642

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +M+  G+ K TGCSWI +K+ ++ F  G+  H   ++I   +  L   M+D+G
Sbjct: 643 MMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIEEIQGAIWRLRKHMKDDG 695



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 247/502 (49%), Gaps = 42/502 (8%)

Query: 29  KSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           KS    + +H H+ K+ + ++  YL N  +  Y++ G                       
Sbjct: 21  KSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCG----------------------- 57

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY--SDYALEMFSKMQLQGVRP 145
                   +L  A  VF+ +   +VVS+N +I G +  G   S++ LE+F +M    + P
Sbjct: 58  --------HLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILP 109

Query: 146 SGFTFSILLST--VSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              TF  + +   ++  C+   +Q+H   I++  S+ +V +G+SL++ Y K+G ++ A  
Sbjct: 110 DAHTFPGVFTAAALNLGCNFDARQVHVLGIKTA-SIDDVFVGSSLVNFYCKVGCVFEARK 168

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M E +++SW ++ISG  +    + AL  F  MR    + +E+  + V++A      
Sbjct: 169 LFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEF 228

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +D GKQV  + VK G L    VL+A + +++KC  L  S+ LFE     +    + +I+ 
Sbjct: 229 VDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITG 288

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y + G    AL+LF  M      P+EFTL  VL +   +  +E G Q H   +KSG+++ 
Sbjct: 289 YSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQ 348

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
              A++L++MYAK G    + + F  L + DLV W +I+ G  QNG+  E L ++  +  
Sbjct: 349 IYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQM 408

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + P+ +T+A+VL AC+    +++G  +  A   +YG+ P     + +  +  + G L 
Sbjct: 409 RKILPNELTMASVLKACSNLAALEQGKQI-HARTIKYGLGPELSIRSALSTMYAKCGSLE 467

Query: 501 KAIDITSTMPFQPGCSIWESIL 522
           + + I   M  Q     W +++
Sbjct: 468 EGVLIFRRM-LQRDIVSWNAMI 488



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 137/289 (47%), Gaps = 36/289 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    + +  K  HG+L K G+    Y     +D+Y++FG + D            
Sbjct: 320 VLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGD------------ 367

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A K FD + EPD+V W S+I+GY   G ++ AL M+ +MQ+
Sbjct: 368 -------------------ARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQM 408

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + + P+  T + +L   S +++   GKQIH   I+ GL    + + ++L  MY K G L 
Sbjct: 409 RKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLG-PELSIRSALSTMYAKCGSLE 467

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               +F  M + DI+SWN++ISG   +G+G  AL+ F  MR  G  PD  T   V++AC+
Sbjct: 468 EGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACS 527

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFE 305
            +  + +G   F +      L   +   A  +D+ S+  +L ++    E
Sbjct: 528 HMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIE 576



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 62/124 (50%), Gaps = 4/124 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  + +  K IH    K G      + +    +Y++ G+ ++ + +F  + Q
Sbjct: 419 ASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQ 478

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ +SWN  + GL ++ +   AL++F+E+     +PD +++ +++S  +  G        
Sbjct: 479 RDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAY 538

Query: 135 FSKM 138
           F+ M
Sbjct: 539 FNMM 542


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 312/559 (55%), Gaps = 9/559 (1%)

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P+K+ I     +    +   ++ A  +FDE+PE DVV+W +MI+GYAS  Y+  A E F 
Sbjct: 41  PKKHHILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFH 100

Query: 137 KMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M  QG  P+ FT S +L +  +     +G  +HG +++ G+  S + + N+L++MY   
Sbjct: 101 EMFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGS-LYVDNALMNMYATC 159

Query: 194 GV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            V +  AF +F +++  + ++W +LI+G  + G G   L  +  M         Y I+I 
Sbjct: 160 SVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIA 219

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   + ++  GKQ+ A  VK GF SN  V+++ +D + +C  L ++ R F +++  D 
Sbjct: 220 VRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDL 279

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N +IS   R    E AL +FQ    +   P  +T + ++++   I  +  G Q H  
Sbjct: 280 ITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGR 338

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAE 430
             + GF+ N  +A++L++MYAK G I  S  +F +++ +R+LVSW ++M+G   +G  AE
Sbjct: 339 IYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAE 398

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            +++F++++  G+ PDRI   AVL AC + G V+KG+  F+ M+ EYG+ P  + Y C++
Sbjct: 399 AVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVV 458

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV-AERMMDLQLPSP 549
           DLL +AG++G+A ++   MPF+P  S W +IL A   +    L   + A+++M+L+    
Sbjct: 459 DLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPRMV 518

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y +L+  YA  G+W    RV+K+MR  G  K  G SWI ++N++++F   +       
Sbjct: 519 GTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQVFSFAVSDKMCPNAS 578

Query: 610 KIYLVLRLLTWEMEDEGCV 628
            +Y VL LL  E ++ G V
Sbjct: 579 SVYSVLGLLIEETKEAGYV 597



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 196/409 (47%), Gaps = 41/409 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG-TSDDVLQLFDEIP 77
           S ++  C + K   +   +HG + KLG     Y+ N  +++Y+    T +    +F +I 
Sbjct: 115 SSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIK 174

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            KN                                V+W ++I+G+   G     L+M+ +
Sbjct: 175 VKN-------------------------------DVTWTTLITGFTHLGDGIGGLKMYKQ 203

Query: 138 MQLQG--VRPSGFTFSILLS-TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M L+   V P   T ++  S ++ S   GKQIH S+++ G   SN+ + NS++D Y + G
Sbjct: 204 MLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQ-SNLPVMNSILDFYCRCG 262

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A   F  ME+ D+I+WN+LIS    S   E AL  F      G+ P+ YT + ++ 
Sbjct: 263 YLSEAKRYFHEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVA 321

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYA 313
           AC  +  L+ G+Q+     + GF  N  + +A ID+++KC  + DS R+F ++ +R +  
Sbjct: 322 ACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLV 381

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSM 371
               M+  YG +G+G  A+ELF  M+   IRP       VLS+      VE G + F+ M
Sbjct: 382 SWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVM 441

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
             + G + +  + + ++++  + G I  + E+  ++  K D  +W  I+
Sbjct: 442 ESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 39/297 (13%)

Query: 17  YCSQLIDRC-LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           YC  +  R   S  S    K IH  + K GF ++  + N  LD Y R G   +  + F E
Sbjct: 214 YCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHE 273

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +  K+ I+WN  +  L +SD                                S  AL MF
Sbjct: 274 MEDKDLITWNTLISELERSD--------------------------------SSEALLMF 301

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            + + QG  P+ +TF+ L++  ++      G+Q+HG + R G +  NV L N+LIDMY K
Sbjct: 302 QRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFN-KNVELANALIDMYAK 360

Query: 193 LGVLYYAFGVFLNMEE-LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
            G +  +  VF  +EE  +++SW S++ G  + GYG  A++ F  M  SG  PD      
Sbjct: 361 CGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMA 420

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           V++AC     ++KG + F  +  + G   +  + +  +DL  +  ++ ++  L E++
Sbjct: 421 VLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERM 477


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/612 (28%), Positives = 321/612 (52%), Gaps = 37/612 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   ++ +  K +H  + ++G++   Y+G   L +Y++ G+ +D            
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED------------ 365

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              AL+VFD +   +VVSW +MI+G+A  G  D A   F+KM  
Sbjct: 366 -------------------ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  TF  +L   SS      G+QI   +I +G   S+  +  +L+ MY K G L 
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG-SDDRVRTALLSMYAKCGSLK 465

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + + ++++WN++I+        + AL  F ++   G  P+  T + ++N C 
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK 525

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +L+ GK V  L +K G  S+  V +A + +F  C  L  +  LF  + + D    N 
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSG 376
           +I+ + ++G  +VA + F++M    I+P + T + +L++   P  +  G + H++  ++ 
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FD + +V + L+ MY K GSI+ + ++F KL K+++ SW +++ G  Q+GR  E L++F 
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFY 705

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++ +EG+ PD IT    L AC + G +++G+  F +MKE + + P  EHY C++DL  +A
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRA 764

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L +A++    M  +P   +W ++L A  ++ +V+L E  A++ ++L       + +L+
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G W+ + +++KVM   G+ K  G SWI +  +++TF + +  H   ++I+  L 
Sbjct: 825 NIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELE 884

Query: 617 LLTWEMEDEGCV 628
            L  EM   G V
Sbjct: 885 RLHMEMRQLGYV 896



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++  A KVFD +P  D+V+W SMI+G A  G    A  +F +M+ +GV+P    F 
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 152 ILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            LL   +   +   GK++H  M   G   + + +G +++ MY K G +  A  VF  ++ 
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWD-TEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW ++I+G    G  + A   F  M  SG  P+  T   ++ AC+    L +G+Q+
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               ++ G+ S+  V +A + +++KC  L+D+ R+FE++ + +    N MI+ Y ++   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + AL  FQ +L+E I+P   T + +L+       +E G   H + +K+G +S+  V+++L
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL 555

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + M+   G + S+  +F  + KRDLVSWNTI+ G  Q+G+     D F+ + E G+ PD+
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDK 615

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           IT   +L AC     + +G  + + + E   +  V+ G      +I +  + G +  A  
Sbjct: 616 ITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVG----TGLISMYTKCGSIEDAHQ 671

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVK 532
           +   +P +     W S++   A +G  K
Sbjct: 672 VFHKLP-KKNVYSWTSMIAGYAQHGRGK 698



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/559 (23%), Positives = 269/559 (48%), Gaps = 42/559 (7%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           +H+     +Y S L+  C+ FK+    + I+ H+ K G     ++ N  +++Y++ G + 
Sbjct: 104 SHIQIYRQTY-SALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTI 162

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              Q+FD++ +K+  SWN+                               ++ GY   G 
Sbjct: 163 SAKQIFDDMREKDVYSWNL-------------------------------LLGGYVQHGL 191

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGN 184
            + A ++  +M    V+P   TF  +L+  + A +   G++++  ++++G   +++ +G 
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWD-TDLFVGT 250

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +LI+M+ K G +  A  VF N+   D+++W S+I+G    G  + A + F  M   G  P
Sbjct: 251 ALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D+     ++ AC     L++GK+V A   +VG+ +   V +A + +++KC  +ED++ +F
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVE 363
           + +   +      MI+ + ++G  + A   F  M+   I P   T   +L +   P  ++
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q     I++G+ S+  V ++L+ MYAK GS+  +  +F K+ K+++V+WN ++    
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV-FSAMKEEYGVMPG 482
           Q+ +    L  F+ LL+EG+ P+  T  ++L  C     ++ G  V F  MK   G+   
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESD 548

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
                 ++ +    G L  A ++ + MP +   S W +I+     +G  ++  +  + M 
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS-WNTIIAGFVQHGKNQVAFDYFKMMQ 607

Query: 543 DLQL-PSPLPYSLLTQAYA 560
           +  + P  + ++ L  A A
Sbjct: 608 ESGIKPDKITFTGLLNACA 626



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 195/371 (52%), Gaps = 7/371 (1%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSS 159
           VF +I   D    N++++  +  G  + A+++  ++    ++    T+S LL       +
Sbjct: 68  VFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              G++I+  + +SG+   ++ + N+LI+MY K G    A  +F +M E D+ SWN L+ 
Sbjct: 126 LGDGERIYNHIKKSGVQ-PDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLG 184

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G    G  E A      M      PD+ T   ++NAC   RN+DKG++++ L +K G+ +
Sbjct: 185 GYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDT 244

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V +A I++  KC  + D+ ++F+ L   D      MI+   R+G  + A  LFQ M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 340 REDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            E ++P +     +L +   P  +E G + H+   + G+D+   V ++++ MY K GS++
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + E+F  +  R++VSW  ++ G  Q+GR  E    F +++E G+ P+R+T  ++L AC+
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424

Query: 459 YGGFVDKGMLV 469
               + +G  +
Sbjct: 425 SPSALKRGQQI 435



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 35/295 (11%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K + S  + +++ C S  S +  K +H  + K G  +  ++ N  + ++   G       
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LF+++P+++ +SW                               N++I+G+   G +  A
Sbjct: 571 LFNDMPKRDLVSW-------------------------------NTIIAGFVQHGKNQVA 599

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
            + F  MQ  G++P   TF+ LL+  +S      G+++H  +  +     +V++G  LI 
Sbjct: 600 FDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD-CDVLVGTGLIS 658

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  VF  + + ++ SW S+I+G    G G+ AL+ FY M+  G  PD  T
Sbjct: 659 MYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWIT 718

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
               ++AC     +++G   F    +             +DLF +   L ++V  
Sbjct: 719 FVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEF 773


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/612 (28%), Positives = 321/612 (52%), Gaps = 37/612 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   ++ +  K +H  + ++G++   Y+G   L +Y++ G+ +D            
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMED------------ 365

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              AL+VFD +   +VVSW +MI+G+A  G  D A   F+KM  
Sbjct: 366 -------------------ALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  TF  +L   SS      G+QI   +I +G   S+  +  +L+ MY K G L 
Sbjct: 407 SGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG-SDDRVRTALLSMYAKCGSLK 465

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + + ++++WN++I+        + AL  F ++   G  P+  T + ++N C 
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK 525

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +L+ GK V  L +K G  S+  V +A + +F  C  L  +  LF  + + D    N 
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSG 376
           +I+ + ++G  +VA + F++M    I+P + T + +L++   P  +  G + H++  ++ 
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FD + +V + L+ MY K GSI+ + ++F KL K+++ SW +++ G  Q+GR  E L++F 
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFY 705

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++ +EG+ PD IT    L AC + G +++G+  F +MKE + + P  EHY C++DL  +A
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRA 764

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L +A++    M  +P   +W ++L A  ++ +V+L E  A++ ++L       + +L+
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G W+ + +++KVM   G+ K  G SWI +  +++TF + +  H   ++I+  L 
Sbjct: 825 NIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELE 884

Query: 617 LLTWEMEDEGCV 628
            L  EM   G V
Sbjct: 885 RLHMEMRQLGYV 896



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++  A KVFD +P  D+V+W SMI+G A  G    A  +F +M+ +GV+P    F 
Sbjct: 257 IKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFV 316

Query: 152 ILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            LL   +   +   GK++H  M   G   + + +G +++ MY K G +  A  VF  ++ 
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWD-TEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW ++I+G    G  + A   F  M  SG  P+  T   ++ AC+    L +G+Q+
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               ++ G+ S+  V +A + +++KC  L+D+ R+FE++ + +    N MI+ Y ++   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + AL  FQ +L+E I+P   T + +L+       +E G   H + +K+G +S+  V+++L
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNAL 555

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + M+   G + S+  +F  + KRDLVSWNTI+ G  Q+G+     D F+ + E G+ PD+
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDK 615

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           IT   +L AC     + +G  + + + E   +  V+ G      +I +  + G +  A  
Sbjct: 616 ITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVG----TGLISMYTKCGSIEDAHQ 671

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVK 532
           +   +P +     W S++   A +G  K
Sbjct: 672 VFHKLP-KKNVYSWTSMITGYAQHGRGK 698



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/559 (23%), Positives = 269/559 (48%), Gaps = 42/559 (7%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           +H+     +Y S L+  C+ FK+    + I+ H+ K G     ++ N  +++Y++ G + 
Sbjct: 104 SHIQIYRQTY-SALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTI 162

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              Q+FD++ +K+  SWN+                               ++ GY   G 
Sbjct: 163 SAKQIFDDMREKDVYSWNL-------------------------------LLGGYVQHGL 191

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGN 184
            + A ++  +M    V+P   TF  +L+  + A +   G++++  ++++G   +++ +G 
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWD-TDLFVGT 250

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +LI+M+ K G +  A  VF N+   D+++W S+I+G    G  + A + F  M   G  P
Sbjct: 251 ALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP 310

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D+     ++ AC     L++GK+V A   +VG+ +   V +A + +++KC  +ED++ +F
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVE 363
           + +   +      MI+ + ++G  + A   F  M+   I P   T   +L +   P  ++
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q     I++G+ S+  V ++L+ MYAK GS+  +  +F K+ K+++V+WN ++    
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV-FSAMKEEYGVMPG 482
           Q+ +    L  F+ LL+EG+ P+  T  ++L  C     ++ G  V F  MK   G+   
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESD 548

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
                 ++ +    G L  A ++ + MP +   S W +I+     +G  ++  +  + M 
Sbjct: 549 LHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS-WNTIIAGFVQHGKNQVAFDYFKMMQ 607

Query: 543 DLQL-PSPLPYSLLTQAYA 560
           +  + P  + ++ L  A A
Sbjct: 608 ESGIKPDKITFTGLLNACA 626



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 195/371 (52%), Gaps = 7/371 (1%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSS 159
           VF +I   D    N++++  +  G  + A+++  ++    ++    T+S LL       +
Sbjct: 68  VFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              G++I+  + +SG+   ++ + N+LI+MY K G    A  +F +M E D+ SWN L+ 
Sbjct: 126 LGDGERIYNHIKKSGVQ-PDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLG 184

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G    G  E A      M      PD+ T   ++NAC   RN+DKG++++ L +K G+ +
Sbjct: 185 GYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDT 244

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V +A I++  KC  + D+ ++F+ L   D      MI+   R+G  + A  LFQ M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 340 REDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            E ++P +     +L +   P  +E G + H+   + G+D+   V ++++ MY K GS++
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + E+F  +  R++VSW  ++ G  Q+GR  E    F +++E G+ P+R+T  ++L AC+
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424

Query: 459 YGGFVDKGMLV 469
               + +G  +
Sbjct: 425 SPSALKRGQQI 435



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 35/295 (11%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K + S  + +++ C S  S +  K +H  + K G  +  ++ N  + ++   G       
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LF+++P+++ +SW                               N++I+G+   G +  A
Sbjct: 571 LFNDMPKRDLVSW-------------------------------NTIIAGFVQHGKNQVA 599

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
            + F  MQ  G++P   TF+ LL+  +S      G+++H  +  +     +V++G  LI 
Sbjct: 600 FDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD-CDVLVGTGLIS 658

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  VF  + + ++ SW S+I+G    G G+ AL+ FY M+  G  PD  T
Sbjct: 659 MYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWIT 718

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
               ++AC     +++G   F    +             +DLF +   L ++V  
Sbjct: 719 FVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEF 773


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 192/619 (31%), Positives = 322/619 (52%), Gaps = 43/619 (6%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           TY+ N  L  Y+R G      +LFD +P  N  + N  L  L  +  L    ++F  +P+
Sbjct: 45  TYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQ 104

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-------GVRPSGFTFSILL---STVSS 159
            D VS+N++I+G++  G    A   +  +  +        VRPS  T S ++   S +  
Sbjct: 105 RDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGD 164

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-----------------VLY----- 197
              G+Q+H  ++R G   +     + L+DMY K+G                 V+Y     
Sbjct: 165 RALGRQVHCQIMRLGFG-AYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMIT 223

Query: 198 ---------YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
                     A GVF  M + D I+W ++++G   +G    ALD F  MR  G   D+YT
Sbjct: 224 GLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYT 283

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              ++ AC  L   ++GKQ+ A +++  +  N  V SA +D++SKC  +  +  +F ++ 
Sbjct: 284 FGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMT 343

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
             +      MI  YG+ G GE A+ +F  M  + I+P +FTL  V+SS   +  +E G+Q
Sbjct: 344 CKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQ 403

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           FH MA+ SG      V+S+L+ +Y K GSI+ +  +F ++   D VS+  ++ G  Q G+
Sbjct: 404 FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGK 463

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           A ET+D+FE++L +G+ P+ +T   VL AC+  G V+KG   F +M++++G++  ++HY 
Sbjct: 464 AKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYT 523

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C+IDL  ++G+L +A +    MP  P    W ++L A  + GD+++ +  AE ++     
Sbjct: 524 CMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQ 583

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           +P  Y LL   +A +G W  +  +++ MR   + K  GCSWI  KNR++ F+A +  H  
Sbjct: 584 NPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPF 643

Query: 608 GQKIYLVLRLLTWEMEDEG 626
              IY  L+ L  +M +EG
Sbjct: 644 SGTIYEKLQWLNSKMAEEG 662



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 235/446 (52%), Gaps = 18/446 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L DR L        + +H  + +LGF A+ +  +  +D+Y++ G   D  ++FDE+  
Sbjct: 160 SALGDRAL-------GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVV 212

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + +N  + GLL+   ++ A  VF+ + + D ++W +M++G    G    AL++F +M
Sbjct: 213 KNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRM 272

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +GV    +TF  +L+    ++++  GKQIH   IR+ L   N+ +G++L+DMY K   
Sbjct: 273 RAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRT-LYDGNIFVGSALVDMYSKCRS 331

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M   +IISW ++I G   +G GE A+  F  M+  G  P+++T+  VI++
Sbjct: 332 IRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISS 391

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L++G Q   +++  G      V SA + L+ KC  +ED+ RLF+++   D    
Sbjct: 392 CANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSY 451

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
             ++S Y ++G  +  ++LF+ ML + ++P   T   VLS+      VE G S FHSM  
Sbjct: 452 TALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQ 511

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETL 432
             G        + ++++Y+++G +  + E   ++ +  D + W T++      G     +
Sbjct: 512 DHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRG----DM 567

Query: 433 DVFEELLEEGLPPDRITLAAVLLACN 458
           ++ +   E  L  D    A+ +L C+
Sbjct: 568 EIGKWAAENLLKTDPQNPASYVLLCS 593



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 43/260 (16%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           +R   + P  Y ++ ++ A  +   L   +++F         + + +LSA     +    
Sbjct: 36  LRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSA----LAHARL 91

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED-------IRPTEFT 349
           L D  RLF  + + D    N +I+ +   G    A   ++ +LRE+       +RP+  T
Sbjct: 92  LPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRIT 151

Query: 350 LS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF---- 404
           +S  V+++  +     G Q H   ++ GF + A   S L++MYAK G I  +  +F    
Sbjct: 152 MSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMV 211

Query: 405 VK---------------------------LDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           VK                           +  RD ++W T++ GLTQNG  +E LDVF  
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR 271

Query: 438 LLEEGLPPDRITLAAVLLAC 457
           +  EG+  D+ T  ++L AC
Sbjct: 272 MRAEGVGIDQYTFGSILTAC 291


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 185/623 (29%), Positives = 322/623 (51%), Gaps = 40/623 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C      D  + +HGH+ K G++ H    N  + +Y+RFG                
Sbjct: 264 IIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFG---------------- 307

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           +  A  VF  I   D++SW SMI+G+   GY   AL +F  M  
Sbjct: 308 ---------------QIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFR 352

Query: 141 QGV-RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           QG  +P+ F F  + S   S      G+QIHG   + GL   NV  G SL DMY K G L
Sbjct: 353 QGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLG-RNVFAGCSLCDMYAKFGFL 411

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A   F  +E  D++SWN++I+   +SG    A+  F  M ++G  PD  T   ++ AC
Sbjct: 412 PSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCAC 471

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
                +++G Q+ +  +K+G    + V ++ + +++KC+ L D+  +F+ + +  +    
Sbjct: 472 GSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSW 531

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N ++S   ++        LF+LML  + +P   T++ +L +   +  +E G+Q H  ++K
Sbjct: 532 NAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVK 591

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG   +  V++ L++MYAK GS+  + ++F      D+VSW+++++G  Q G   E L++
Sbjct: 592 SGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNL 651

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +   G+ P+ +T   VL AC++ G V++G   ++ M+ E G+ P  EH +C++DLL 
Sbjct: 652 FRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLA 711

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A +    M F P  ++W+++L +   +G+V + E  AE ++ L   +     L
Sbjct: 712 RAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVL 771

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A  G W+ + R++ +M++ G+ KV G SWI +K++I+ F + +  H     IY +
Sbjct: 772 LSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIYTM 831

Query: 615 LRLLTWEMEDEGCVYLECDKLDV 637
           L  L  +M D+G  Y  C +LD+
Sbjct: 832 LEDLWLQMLDDG--YDPCQRLDI 852



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 164/319 (51%), Gaps = 3/319 (0%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +++ S  +GK+IH  +++S     ++VL N +++MYGK G L  A   F  M+  +++SW
Sbjct: 168 TSIRSLKYGKKIHDHILKSNCQ-PDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSW 226

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
             +ISG   +G    A+  +  M  SGY PD  T   +I AC    ++D G+Q+    +K
Sbjct: 227 TIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIK 286

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G+  + I  +A I ++++  ++  +  +F  +   D      MI+ + + G+   AL L
Sbjct: 287 SGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYL 346

Query: 335 FQLMLREDI-RPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           F+ M R+   +P EF    V S+   +   E G Q H M  K G   N     SL +MYA
Sbjct: 347 FRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYA 406

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G + S+   F +++  DLVSWN I+   + +G   E +  F +++  GL PD IT  +
Sbjct: 407 KFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLS 466

Query: 453 VLLACNYGGFVDKGMLVFS 471
           +L AC     +++G  + S
Sbjct: 467 LLCACGSPVTINQGTQIHS 485



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 9/157 (5%)

Query: 353 VLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           +L+   I  +++G + H   +KS    + V+ + ++ MY K GS+  + + F  +  R++
Sbjct: 164 ILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNV 223

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           VSW  ++ G +QNG+  + + ++ ++L+ G  PD +T  +++ AC   G +D G  +   
Sbjct: 224 VSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGH 283

Query: 473 MKEEYGVMPGEEHY----ACIIDLLCQAGQLGKAIDI 505
           +     +  G +H+      +I +  + GQ+  A D+
Sbjct: 284 V-----IKSGYDHHLIAQNALISMYTRFGQIVHASDV 315



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 51/232 (21%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           NK      + ++  C    S +    +H    K G      + NR +D+Y++ G+     
Sbjct: 559 NKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGS----- 613

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                     L  A  VF     PD+VSW+S+I GYA  G    
Sbjct: 614 --------------------------LKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHE 647

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVV---LG---- 183
           AL +F  M+  GV+P+  T+  +LS  S        H  ++  G    N +   LG    
Sbjct: 648 ALNLFRMMKNLGVQPNEVTYLGVLSACS--------HIGLVEEGWHFYNTMEIELGIPPT 699

Query: 184 ----NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
               + ++D+  + G LY A      M    DI  W +L++ C   G  ++A
Sbjct: 700 REHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIA 751


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 193/683 (28%), Positives = 334/683 (48%), Gaps = 87/683 (12%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            A+ +H H+   GF  +T++ NR +++Y +        +LFD+IP+ + ++    L    
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 93  KSDNLDTALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
            S N+  A ++F+  P    D VS+N+MI+ Y+       AL +F +M+  G  P  FTF
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 151 SILLSTVS----SACHGKQIHGSMIRSGL----SLSNVVLG------------------- 183
           S +LS +S       H + +H  +I+ G     S++N +L                    
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 184 ------------------NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
                              ++I  Y +   L  A  +   +     ++WN++ISG    G
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINAC----TKLRNLDKGKQV------------- 268
             E A D F  M   G   DEYT + +I+AC     K+   + G+QV             
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322

Query: 269 -FALSVKVGFLS---------------------NSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            F LSV    ++                     + I  +A +  +    R+E++  +F +
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSE 382

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHG 365
           +   +     VMIS   + GFGE  L+LF  M  E + P ++  +  +++  +   +++G
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG 442

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q HS  I+ G DS     ++L+ MY++ G ++S+  +F+ +   D VSWN ++  L Q+
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQH 502

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   + +++FE++++E + PDRIT   +L ACN+ G + +G   F  M   YG+ PGE+H
Sbjct: 503 GHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDH 562

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YA +IDLLC+AG   KA  +  +MPF+ G  IWE++L    I+G+++L    A+R+++L 
Sbjct: 563 YARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELI 622

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                 Y +L+  YA  G+W+ + RV+ +MR+ G+ K  GCSW+ ++N ++ F   + +H
Sbjct: 623 PGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARH 682

Query: 606 HGGQKIYLVLRLLTWEMEDEGCV 628
              Q +Y  L+ L  EM+  G V
Sbjct: 683 PEVQAVYTYLQQLVNEMKKLGYV 705



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 144/271 (53%), Gaps = 9/271 (3%)

Query: 31  FDFAKTIHGHLFKLGFN-AHTYL---GNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           F+  + +HG++ +     +H ++    N  +  Y+++    +  ++FD++P ++ ISWN 
Sbjct: 303 FNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNA 362

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
            L G + +  ++ A  +F E+PE +V++W  MISG A  G+ +  L++F++M+ +G+ P 
Sbjct: 363 VLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPC 422

Query: 147 GFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            + F+  ++  S   S  +G+QIH  +IR G   S +  GN+LI MY + GV+  A  VF
Sbjct: 423 DYAFAGAITACSVLGSLDNGQQIHSQVIRLGHD-SGLSAGNALITMYSRCGVVESAESVF 481

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
           L M  +D +SWN++I+     G+G  A++ F  M      PD  T   ++ AC     + 
Sbjct: 482 LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIK 541

Query: 264 KGKQVF-ALSVKVGFLSNSIVLSATIDLFSK 293
           +G+  F  +  + G        +  IDL  +
Sbjct: 542 EGRHYFDTMCTRYGITPGEDHYARLIDLLCR 572



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 86/215 (40%), Gaps = 37/215 (17%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C    S D  + IH  + +LG ++    GN  + +YSR G  +    +F  +P  + 
Sbjct: 430 ITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDS 489

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SWN                               +MI+  A  G+   A+E+F +M  +
Sbjct: 490 VSWN-------------------------------AMIAALAQHGHGVKAIELFEQMMKE 518

Query: 142 GVRPSGFTFSILLSTVSSAC---HGKQIHGSM-IRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            + P   TF  +L+  + A     G+    +M  R G++         LID+  + G+  
Sbjct: 519 DILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYAR-LIDLLCRAGMFL 577

Query: 198 YAFGVFLNME-ELDIISWNSLISGCFNSGYGELAL 231
            A  V  +M  E     W +L++GC   G  EL +
Sbjct: 578 KAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGI 612


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 304/547 (55%), Gaps = 10/547 (1%)

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S    L    K      A ++FD +PE + VSWN++++GY   G    A+++F +M+
Sbjct: 135 NVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEME 194

Query: 140 LQGVRPSGFTFSILLSTVS-SACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            +G  P   TF+ LL+ V+ S C    Q+HG +++ G +L  +VL N+ I  Y + G L 
Sbjct: 195 REGFLPDEATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVL-NAAITAYSQCGALA 253

Query: 198 YAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINA 255
            +  +F  + +  D+ISWN+++      G    A+  F SM R SG  PD Y+ + +I+A
Sbjct: 254 NSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISA 313

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWDY 312
           C + R+   G  +  L  K GF   + V +A I ++++ +    +ED+ + F+ L   D 
Sbjct: 314 CAEHRD-HGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDT 372

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N M++ Y ++G    AL  F+ M  E+I   E+  S  L S   +  +  G Q H +
Sbjct: 373 VSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGL 432

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            I+SGF SN  V+SSL+ MY+K+G +D + + F + DK   V WN++M G  Q+G+A   
Sbjct: 433 VIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAV 492

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
             +F ++LE  +P D IT   ++ AC++ G VD+G  + + M+  YG+    EHYAC ID
Sbjct: 493 RSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGID 552

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           L  +AGQL KA ++  +MPF+P   +W ++L A  ++G+++L  +VA  +++ +      
Sbjct: 553 LYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHST 612

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL+  Y+  G W     V+K M+  G++KV G SWI +KN +++FNA +  H    +I
Sbjct: 613 YVLLSNMYSGLGMWSDRAIVQKEMKNKGLSKVPGWSWIEVKNEVHSFNAEDGSHPRMDEI 672

Query: 612 YLVLRLL 618
           Y +L LL
Sbjct: 673 YEMLSLL 679



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 229/482 (47%), Gaps = 31/482 (6%)

Query: 84  WNICLRGL-LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
           WN  L    + S  L  A ++FDEIP  D  SWNS+++ + S G    A  +   M  +G
Sbjct: 37  WNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERG 96

Query: 143 VRPSGFTF-SILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           +  + F   S L S  +  C   G Q+H   +++GL+  NV    +L+ MY K G    A
Sbjct: 97  LAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLA-DNVFSATALLHMYAKCGRTRDA 155

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS---IVINAC 256
             +F  M E + +SWN+L++G   SG    A+  F  M   G+ PDE T +    V+N  
Sbjct: 156 CRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVNDS 215

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
           T         Q+    VK G     IVL+A I  +S+C  L +S R+F+++ DR D    
Sbjct: 216 TCFLM----HQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISW 271

Query: 316 NVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374
           N M+  Y  +G    A+  F  M+R   ++P  ++ + ++S+        G+  H +  K
Sbjct: 272 NAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDHGGTVIHGLVSK 331

Query: 375 SGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           +GF+    V ++L+ MY +      ++ + + F  L  +D VSWN+++ G +Q+G +A+ 
Sbjct: 332 NGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADA 391

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L  F  +  E +  D    +A L +C+    +  G  +   +    G        + +I 
Sbjct: 392 LRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRS-GFASNNFVSSSLIF 450

Query: 492 LLCQAGQLGKAI------DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           +  ++G L  A+      D +S++P       W S++   A +G  +   ++  +M++L+
Sbjct: 451 MYSKSGILDDAMKSFEEADKSSSVP-------WNSMMFGYAQHGKAQAVRSLFNQMLELK 503

Query: 546 LP 547
           +P
Sbjct: 504 VP 505



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 197/438 (44%), Gaps = 49/438 (11%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG + K G      + N  +  YS+ G   +  ++FDEI  ++                
Sbjct: 223 LHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRS---------------- 266

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF-SKMQLQGVRPSGFTFSILLS 155
                         D++SWN+M+  YA+ G    A+  F S M+  GV+P  ++F    +
Sbjct: 267 --------------DLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSF----T 308

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLG-----NSLIDMYGKLG---VLYYAFGVFLNME 207
           ++ SAC   + HG  +  GL   N   G     N+LI MY +     ++  A+  F ++ 
Sbjct: 309 SIISACAEHRDHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLL 368

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D +SWNS+++G    G    AL  F  M+    + DEY  S  + +C+ L  L  G+Q
Sbjct: 369 LKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQ 428

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  L ++ GF SN+ V S+ I ++SK   L+D+++ FE+ D+      N M+  Y ++G 
Sbjct: 429 IHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGK 488

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVAS 385
            +    LF  ML   +     T   ++++      V+ GS+  ++M  + G        +
Sbjct: 489 AQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYA 548

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             +++Y + G +D + E+   +  + D + W T++     +G      DV   LL E  P
Sbjct: 549 CGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLL-EAEP 607

Query: 445 PDRITLAAVLLACNYGGF 462
               T   VLL+  Y G 
Sbjct: 608 RQHSTY--VLLSNMYSGL 623



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 147/309 (47%), Gaps = 9/309 (2%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGV-LYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           H ++++SG++  +    N L+  Y      L  A  +F  +  LD  SWNSL++   + G
Sbjct: 23  HATLLKSGVT--SPTPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIG 80

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
               A     +M   G + + + +   + +   +     G Q+ +L+VK G   N    +
Sbjct: 81  AHPAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSAT 140

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A + +++KC R  D+ RLF+ +   +    N +++ Y   G    A++LF  M RE   P
Sbjct: 141 ALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLP 200

Query: 346 TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
            E T + +L+ +         Q H   +K G     +V ++ +  Y++ G++ +S  IF 
Sbjct: 201 DEATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFD 260

Query: 406 KL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLAC----NY 459
           ++ D+ DL+SWN ++     +G   E +  F  ++   G+ PD  +  +++ AC    ++
Sbjct: 261 EIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDH 320

Query: 460 GGFVDKGML 468
           GG V  G++
Sbjct: 321 GGTVIHGLV 329



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 42/351 (11%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           +S ++ + V     S+ S +I  C   +       IHG + K GF   T++ N  + +Y+
Sbjct: 292 ASMMRASGVQPDMYSFTS-IISACAEHRDHG-GTVIHGLVSKNGFEGVTHVCNALIAMYT 349

Query: 62  RFGTS---DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSM 118
           RF  +   +D  + FD +  K+ +SW                               NSM
Sbjct: 350 RFSENCMMEDAYKCFDSLLLKDTVSW-------------------------------NSM 378

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGL 175
           ++GY+  G S  AL  F  MQ + +    + FS  L + S       G+QIHG +IRSG 
Sbjct: 379 LTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGF 438

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
           + +N V  +SLI MY K G+L  A   F   ++   + WNS++ G    G  +     F 
Sbjct: 439 ASNNFV-SSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFN 497

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKC 294
            M       D  T   +I AC+    +D+G ++   +  + G        +  IDL+ + 
Sbjct: 498 QMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRA 557

Query: 295 NRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
            +L+ +  L + +    D  V   ++     +G  E+A ++   +L  + R
Sbjct: 558 GQLDKAKELIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPR 608


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 184/598 (30%), Positives = 311/598 (52%), Gaps = 36/598 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C S  +      +H H  K G +A   L    LDLYS                 
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS----------------- 408

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K  +++TA K F      ++V WN M+  Y        + E+F +M
Sbjct: 409 --------------KCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQM 454

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q++G+ P+ FT+  +L T +S      G+QIH  +I++G  L NV + + LIDMY K G 
Sbjct: 455 QMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL-NVYVCSVLIDMYAKYGQ 513

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +   + E D++SW ++I+G         AL  F  M Y G   D    +  I+A
Sbjct: 514 LALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISA 573

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +R L +G+Q+ A S   GF ++  + +A I L+++C R++++   FE++   +    
Sbjct: 574 CAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISW 633

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N ++S   + G+ E AL++F  MLR +     FT    +S+      ++ G Q HSM +K
Sbjct: 634 NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G+DS   V++SL+ +YAK+GSI  +   F  + +R+++SWN ++ G +Q+G   E L +
Sbjct: 694 TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FEE+   G+ P+ +T   VL AC++ G V +G+  F +M + + ++P  EHY C++DLL 
Sbjct: 754 FEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLG 813

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AGQL +A++    MP      IW ++L A  I+ ++++ E  A  +++L+      Y L
Sbjct: 814 RAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVL 873

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           ++  YA+  +W      +K+M+  G+ K  G SWI +KN ++ F AG+  H    +IY
Sbjct: 874 ISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIY 931



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 217/432 (50%), Gaps = 36/432 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +F++ K +H   F  GF++   + N  +DLYS+ G  +   ++F      NC    IC++
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF------NC----ICMK 224

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                D+V+W +MISG +  G  + A+ +F  M    + P+ + 
Sbjct: 225 ---------------------DIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV 263

Query: 150 FSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S +LS  +       G+Q+H  +I+ G   S   + N L+ +Y +   L  A  +F  M
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFH-SETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D +S+NSLISG    G+ + AL+ F  M+     PD  T++ +++AC  +  L KG 
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ + ++K G  ++ I+  + +DL+SKC  +E + + F   +  +  + NVM+  YG+  
Sbjct: 383 QLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLD 442

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               + E+F+ M  E + P +FT   +L +   +  +  G Q H+  IK+GF  N  V S
Sbjct: 443 NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK G +  +  I  +L + D+VSW  ++ G  Q+   +E L +FEE+   G+  
Sbjct: 503 VLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQF 562

Query: 446 DRITLAAVLLAC 457
           D I  A+ + AC
Sbjct: 563 DNIGFASAISAC 574



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 242/503 (48%), Gaps = 54/503 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L++ CL+  S      +H  + K GF+    L +  +D Y R G                
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG---------------- 107

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +   A+KVFDE     V SWN MI  + +   +     +F +M  
Sbjct: 108 ---------------DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLA 152

Query: 141 QGVRPSGFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +G+ P+G+TF+ +L     AC G        KQ+H      G   S +V  N LID+Y K
Sbjct: 153 EGITPNGYTFAGVLK----ACVGGDIAFNYVKQVHSRTFYYGFDSSPLV-ANLLIDLYSK 207

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  VF  +   DI++W ++ISG   +G  E A+  F  M  S   P  Y +S V
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSV 267

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++A TK++  + G+Q+  L +K GF S + V +  + L+S+  +L  + R+F  ++  D 
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N +IS   + GF + ALELF  M R+ ++P   T++ +LS+   +  +  G Q HS 
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK+G  ++ ++  SL+++Y+K   ++++ + F+  +  ++V WN +++   Q    +++
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDS 447

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH--YAC- 488
            ++F ++  EG+ P++ T  ++L  C        G L        + +  G +   Y C 
Sbjct: 448 FEIFRQMQMEGMIPNQFTYPSILRTC-----TSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 489 -IIDLLCQAGQLGKAIDITSTMP 510
            +ID+  + GQL  A+ I   +P
Sbjct: 503 VLIDMYAKYGQLALALRILRRLP 525



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 210/419 (50%), Gaps = 46/419 (10%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           F+  + +H  + K GF++ TY+ N  + LYSR                            
Sbjct: 277 FELGEQLHCLVIKWGFHSETYVCNGLVALYSR---------------------------- 308

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
              S  L +A ++F  +   D VS+NS+ISG    G+SD ALE+F+KMQ   ++P   T 
Sbjct: 309 ---SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 151 SILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LLS  +S  A H G Q+H   I++G+S ++++L  SL+D+Y K   +  A   FL  E
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMS-ADIILEGSLLDLYSKCADVETAHKFFLTTE 424

Query: 208 ELDIISWNSLISGCFNSGYGEL-----ALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
             +I+ WN ++       YG+L     + + F  M+  G  P+++T   ++  CT L  L
Sbjct: 425 TENIVLWNVML-----VAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+Q+    +K GF  N  V S  ID+++K  +L  ++R+  +L   D      MI+ Y
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            ++     AL+LF+ M    I+      +  +S+   I  +  G Q H+ +  +GF ++ 
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            + ++L+ +YA+ G I  +   F K+  ++ +SWN+++ GL Q+G   E L VF  +L 
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 299/535 (55%), Gaps = 10/535 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A +VFD +P  ++VSWN++I+GY        A+E+F +MQ  G  P G TF++
Sbjct: 138 KCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAV 197

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL+T++        +Q+HG +++ G +L  V L N+ I  Y +   L  +  +F  +E  
Sbjct: 198 LLATIAGPRWYSLMRQLHGKIVKYGSALGLVAL-NAAITAYSQCDALADSRKIFDGIESR 256

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDK-GKQ 267
           D+ISWNS++      G  + A+  F  M R SG  PD Y+ +  I+ C++    D+ G+ 
Sbjct: 257 DLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRS 316

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWDYAVINVMISTYGR 324
           + +L +K G    + V +A I ++++      +ED+   F  L   D    N M++ Y  
Sbjct: 317 IHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSH 376

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G    AL+ F+ M  E+IR  EF LS  L S   +  +  G Q HS+ ++SGF SN  V
Sbjct: 377 HGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFV 436

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +SSL+ MY+K G +  + + F + DK   V WN++M G  Q+G+A    D+F E+L+  +
Sbjct: 437 SSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEV 496

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
           P D +T  A++ A ++GG VD+G  + + M+  Y +    EHYAC +DL  +AGQL KA 
Sbjct: 497 PLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYGRAGQLDKAK 556

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           ++  +MPFQP   +W ++L A  I+G+++L  +VA  +   +      Y LL+  Y+  G
Sbjct: 557 ELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPRQHSTYVLLSSMYSGLG 616

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
            W     V+KVMR   ++K+ G SWI +KN +++FNA +  H    +I+ +LR+L
Sbjct: 617 MWSDRATVQKVMRNRALSKIPGWSWIEVKNEVHSFNADDRSHPRMVEIFDMLRML 671



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 237/500 (47%), Gaps = 34/500 (6%)

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           WN  L     +  L  A +VFDEIP PD  SWNS+++ + + G    A  +   M  +G+
Sbjct: 29  WNQLLTAY-SATGLAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARGL 87

Query: 144 RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
             S F     L + ++A     G Q+    +R GL+  NV   ++L+D+Y K G L  A 
Sbjct: 88  AASTFALGSALRSAAAARRPELGAQLQSFSVRCGLA-DNVFPASALLDVYAKCGRLGDAR 146

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF  M   +I+SWN++I+G  +S     A++ F  M+  G  PD  T ++++      R
Sbjct: 147 RVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGPR 206

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
                +Q+    VK G     + L+A I  +S+C+ L DS ++F+ ++  D    N M+ 
Sbjct: 207 WYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLG 266

Query: 321 TYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEH------GSQFHSMAI 373
            Y  +G  + A+  F  M+RE  I+P  ++ +  +S       EH      G   HS+ I
Sbjct: 267 AYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCS----EHGCDDQQGRSIHSLVI 322

Query: 374 KSGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           K G +    V ++++ MY +      ++ +   F  L  +D VSWN+++ G + +G +++
Sbjct: 323 KFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSD 382

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L  F  +  E +  D   L+A L +C+    +  G  V S + +  G    +   + +I
Sbjct: 383 ALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQS-GFASNDFVSSSLI 441

Query: 491 DLLCQAGQLGKA------IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
            +  + G LG A       D +S++P       W S++   A +G  +   ++   M+DL
Sbjct: 442 FMYSKCGVLGDARKSFEEADKSSSVP-------WNSMMFGYAQHGQAQTVTDLFNEMLDL 494

Query: 545 QLP-SPLPYSLLTQAYAMRG 563
           ++P   + +  L  AY+  G
Sbjct: 495 EVPLDHVTFVALITAYSHGG 514



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 184/392 (46%), Gaps = 49/392 (12%)

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           ++ N  +    + D L  + K+FD I   D++SWNSM+  YA  G  D A+  F +M  +
Sbjct: 228 VALNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRE 287

Query: 142 -GVRPSGFTFSILLSTVSS-AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-- 194
            G++P  ++F+  +S  S   C    G+ IH  +I+ GL     V  N++I MY +    
Sbjct: 288 SGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVC-NAMIAMYTRFADN 346

Query: 195 -VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            ++  A+  F ++   D +SWNS+++G  + G    AL  F  MR      DE+ +S  +
Sbjct: 347 CMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAAL 406

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            +C+ L  L  G+QV +L V+ GF SN  V S+ I ++SKC  L D+ + FE+ D+    
Sbjct: 407 RSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSV 466

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAI 373
             N M+  Y ++G  +   +LF  ML  ++                 P++H         
Sbjct: 467 PWNSMMFGYAQHGQAQTVTDLFNEMLDLEV-----------------PLDH--------- 500

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT--IMMGLTQNGRAAET 431
                   V   +L+  Y+  G +D  +EI   ++ R  +         G+   GRA + 
Sbjct: 501 --------VTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYGRAGQ- 551

Query: 432 LDVFEELLEEGLP--PDRITLAAVLLACNYGG 461
           LD  +EL+E  +P  PD I    +L AC   G
Sbjct: 552 LDKAKELIES-MPFQPDAIVWMTLLGACRIHG 582



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 37/219 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C         + +H  + + GF ++ ++ +  + +YS+ G   D  + F+E  +
Sbjct: 403 SAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADK 462

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV----VSWNSMISGYASCGYSDYALEM 134
            + + WN  + G  +     T   +F+E+ + +V    V++ ++I+ Y+  G  D   E+
Sbjct: 463 SSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEI 522

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            + M+ +        + I +     AC                         +D+YG+ G
Sbjct: 523 LNTMETR--------YKIPMRMEHYACG------------------------VDLYGRAG 550

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALD 232
            L  A  +  +M  + D I W +L+  C   G  ELA D
Sbjct: 551 QLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASD 589


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 185/612 (30%), Positives = 320/612 (52%), Gaps = 36/612 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++D C S    ++ K +H  +   GF +   +G   + +Y + G+ DD            
Sbjct: 164 VLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDD------------ 211

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A +VFD +   DV ++N M+ GYA  G  + A E+F +MQ 
Sbjct: 212 -------------------ARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQ 252

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P+  +F  +L    T  +   GK +H   + +GL + ++ +  SLI MY   G + 
Sbjct: 253 VGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGL-VDDIRVATSLIRMYTTCGSIE 311

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF NM+  D++SW  +I G   +G  E A   F +M+  G  PD  T   ++NAC 
Sbjct: 312 GARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACA 371

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              NL+  +++ +     GF ++ +V +A + +++KC  ++D+ ++F+ + R D    + 
Sbjct: 372 ISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSA 431

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           MI  Y   G+G  A E F LM R +I P   T   +L++   +  ++ G + ++ AIK+ 
Sbjct: 432 MIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKAD 491

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S+  + ++L+ M AK GS++ +  IF  + +RD+++WN ++ G + +G A E L +F+
Sbjct: 492 LVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFD 551

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            +L+E   P+ +T   VL AC+  GFVD+G   F+ + E  G++P  + Y C++DLL +A
Sbjct: 552 RMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRA 611

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L +A  +  +MP +P  SIW S+L A  I+G++ + E  AER + +       Y  L+
Sbjct: 612 GELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLS 671

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G WE + +V+KVM   GI K  GC+WI +  +++TF   +  H    +IY  L 
Sbjct: 672 HMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELA 731

Query: 617 LLTWEMEDEGCV 628
            L   ++ EG +
Sbjct: 732 RLMNAIKREGYI 743



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 250/527 (47%), Gaps = 38/527 (7%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L  RC   +     K +  H+ + G   + Y  N  + LYS                  
Sbjct: 62  KLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYS------------------ 103

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                 IC        N+  A ++FD +    VV+WN++I+GYA  G+   A  +F +M 
Sbjct: 104 ------IC-------GNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV 150

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G+ PS  TF  +L   SS      GK++H  ++ +G  +S+  +G +L+ MY K G +
Sbjct: 151 DEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGF-VSDFRIGTALVSMYVKGGSM 209

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  +   D+ ++N ++ G   SG  E A + FY M+  G  P++ +   +++ C
Sbjct: 210 DDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L  GK V A  +  G + +  V ++ I +++ C  +E + R+F+ +   D     
Sbjct: 270 WTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWT 329

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
           VMI  Y   G  E A  LF  M  E I+P   T   ++++  I   + H  + HS    +
Sbjct: 330 VMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIA 389

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF ++ +V+++L+ MYAK G+I  + ++F  + +RD+VSW+ ++    +NG   E  + F
Sbjct: 390 GFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETF 449

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             +    + PD +T   +L AC + G +D GM +++   +   V       A II +  +
Sbjct: 450 HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALII-MNAK 508

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            G + +A  I  TM  +     W +++   +++G+ +    + +RM+
Sbjct: 509 HGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRML 554



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 1/229 (0%)

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A D    +   G   D  T   +   CT+LR+   GKQV    ++ G   N   L+  I 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           L+S C  + ++ ++F+ ++       N +I+ Y + G  + A  LF+ M+ E + P+  T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 350 LSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
              VL +   P  +  G + H+  + +GF S+  + ++L+ MY K GS+D + ++F  L 
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            RD+ ++N ++ G  ++G   +  ++F  + + GL P++I+  ++L  C
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 184/598 (30%), Positives = 311/598 (52%), Gaps = 36/598 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C S  +      +H H  K G +A   L    LDLYS                 
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS----------------- 408

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K  +++TA K F      ++V WN M+  Y        + E+F +M
Sbjct: 409 --------------KCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQM 454

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q++G+ P+ FT+  +L T +S      G+QIH  +I++G  L NV + + LIDMY K G 
Sbjct: 455 QMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL-NVYVCSVLIDMYAKYGQ 513

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +   + E D++SW ++I+G         AL  F  M Y G   D    +  I+A
Sbjct: 514 LALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISA 573

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  +R L +G+Q+ A S   GF ++  + +A I L+++C R++++   FE++   +    
Sbjct: 574 CAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISW 633

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N ++S   + G+ E AL++F  MLR +     FT    +S+      ++ G Q HSM +K
Sbjct: 634 NSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLK 693

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G+DS   V++SL+ +YAK+GSI  +   F  + +R+++SWN ++ G +Q+G   E L +
Sbjct: 694 TGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRL 753

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FEE+   G+ P+ +T   VL AC++ G V +G+  F +M + + ++P  EHY C++DLL 
Sbjct: 754 FEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLG 813

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AGQL +A++    MP      IW ++L A  I+ ++++ E  A  +++L+      Y L
Sbjct: 814 RAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVL 873

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           ++  YA+  +W      +K+M+  G+ K  G SWI +KN ++ F AG+  H    +IY
Sbjct: 874 ISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIY 931



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 217/432 (50%), Gaps = 36/432 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +F++ K +H   F  GF++   + N  +DLYS+ G  +   ++F      NC    IC++
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF------NC----ICMK 224

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                D+V+W +MISG +  G  + A+ +F  M    + P+ + 
Sbjct: 225 ---------------------DIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV 263

Query: 150 FSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S +LS  +       G+Q+H  +I+ G   S   + N L+ +Y +   L  A  +F  M
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIKWGFH-SETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D +S+NSLISG    G+ + AL+ F  M+     PD  T++ +++AC  +  L KG 
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ + ++K G  ++ I+  + +DL+SKC  +E + + F   +  +  + NVM+  YG+  
Sbjct: 383 QLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLD 442

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               + E+F+ M  E + P +FT   +L +   +  +  G Q H+  IK+GF  N  V S
Sbjct: 443 NLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK G +  +  I  +L + D+VSW  ++ G  Q+   +E L +FEE+   G+  
Sbjct: 503 VLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQF 562

Query: 446 DRITLAAVLLAC 457
           D I  A+ + AC
Sbjct: 563 DNIGFASAISAC 574



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 242/503 (48%), Gaps = 54/503 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L++ CL+  S      +H  + K GF+    L +  +D Y R G                
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG---------------- 107

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +   A+KVFDE     V SWN MI  + +   +     +F +M  
Sbjct: 108 ---------------DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLA 152

Query: 141 QGVRPSGFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +G+ P+G+TF+ +L     AC G        KQ+H      G   S +V  N LID+Y K
Sbjct: 153 EGITPNGYTFAGVLK----ACVGGDIAFNYVKQVHSRTFYYGFDSSPLV-ANLLIDLYSK 207

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  VF  +   DI++W ++ISG   +G  E A+  F  M  S   P  Y +S V
Sbjct: 208 NGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSV 267

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++A TK++  + G+Q+  L +K GF S + V +  + L+S+  +L  + R+F  ++  D 
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N +IS   + GF + ALELF  M R+ ++P   T++ +LS+   +  +  G Q HS 
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK+G  ++ ++  SL+++Y+K   ++++ + F+  +  ++V WN +++   Q    +++
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDS 447

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH--YAC- 488
            ++F ++  EG+ P++ T  ++L  C        G L        + +  G +   Y C 
Sbjct: 448 FEIFRQMQMEGMIPNQFTYPSILRTC-----TSLGALYLGEQIHTHVIKTGFQLNVYVCS 502

Query: 489 -IIDLLCQAGQLGKAIDITSTMP 510
            +ID+  + GQL  A+ I   +P
Sbjct: 503 VLIDMYAKYGQLALALRILRRLP 525



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 210/419 (50%), Gaps = 46/419 (10%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           F+  + +H  + K GF++ TY+ N  + LYSR                            
Sbjct: 277 FELGEQLHCLVIKWGFHSETYVCNGLVALYSR---------------------------- 308

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
              S  L +A ++F  +   D VS+NS+ISG    G+SD ALE+F+KMQ   ++P   T 
Sbjct: 309 ---SRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 151 SILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LLS  +S  A H G Q+H   I++G+S ++++L  SL+D+Y K   +  A   FL  E
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMS-ADIILEGSLLDLYSKCADVETAHKFFLXTE 424

Query: 208 ELDIISWNSLISGCFNSGYGEL-----ALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
             +I+ WN ++       YG+L     + + F  M+  G  P+++T   ++  CT L  L
Sbjct: 425 TENIVLWNVML-----VAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+Q+    +K GF  N  V S  ID+++K  +L  ++R+  +L   D      MI+ Y
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            ++     AL+LF+ M    I+      +  +S+   I  +  G Q H+ +  +GF ++ 
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            + ++L+ +YA+ G I  +   F K+  ++ +SWN+++ GL Q+G   E L VF  +L 
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLR 658


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 192/606 (31%), Positives = 318/606 (52%), Gaps = 37/606 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  + ++ K +H H  K GF +   +GN  + +Y++ G+ DD                  
Sbjct: 246 STGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDD------------------ 287

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                        A  VFD + + DV+SWN+MI G A  G    A  +F KMQ +G  P 
Sbjct: 288 -------------ARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPD 334

Query: 147 GFTFSILLST-VSSACHG--KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T+  LL+T VS+      K++H   +  GL +S++ +G++ + MY + G +  A  +F
Sbjct: 335 STTYLSLLNTHVSTGAWEWVKEVHKHAVEVGL-VSDLRVGSAFVHMYIRCGSIDDAQLIF 393

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             +   ++ +WN++I G      G  AL  F  MR  G+ PD  T   +++A      L+
Sbjct: 394 DKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALE 453

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
             K+V + ++  G L +  V +A + +++KC     + ++F+ +   +     VMIS   
Sbjct: 454 WVKEVHSYAIDAG-LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLA 512

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
           ++G G  A  LF  MLRE I P   T   +LS+      +E   + HS A+ +G  S+  
Sbjct: 513 QHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLR 572

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V ++L+ MYAK GS+D +  +F  + +RD+ SW  ++ GL Q+GR  + LD+F ++  EG
Sbjct: 573 VGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEG 632

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
             P+  +  AVL AC++ G VD+G   F ++ ++YG+ P  EHY C++DLL +AGQL +A
Sbjct: 633 FKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEA 692

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
                 MP +PG + W ++L A   YG++++ E  A+  + L+  S   Y LL+  YA  
Sbjct: 693 KHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAAT 752

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G WE  + V+ +M++ GI K  G SWI + N+I++F  G+  H   ++IY  L+ L   +
Sbjct: 753 GNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRL 812

Query: 623 EDEGCV 628
           + EG V
Sbjct: 813 KAEGYV 818



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 217/460 (47%), Gaps = 39/460 (8%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S +++       ++Y S ++  C S  S  + K IH H+ + GF +   +    +++Y +
Sbjct: 19  SQMRREGGQPNEITYLS-ILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVK 77

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G+ DD   +FD++ ++N ISW +                               MI G 
Sbjct: 78  CGSIDDAQLIFDKMVERNVISWTV-------------------------------MIGGL 106

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSN 179
           A  G    A   F +MQ +G  P+ +T+  +L+  +SA      K++H   + +GL+L +
Sbjct: 107 AHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL-D 165

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           + +GN+L+ MY K G +  A  VF  M E DI SW  +I G    G G+ A   F  M  
Sbjct: 166 LRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER 225

Query: 240 SGYSPDEYTISIVINAC--TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
            G  P+  T   ++NA   T    L+  K+V   + K GF+S+  V +A I +++KC  +
Sbjct: 226 GGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSI 285

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSS 356
           +D+  +F+ +   D    N MI    + G G  A  +F  M +E   P   T LS + + 
Sbjct: 286 DDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTH 345

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
           +     E   + H  A++ G  S+  V S+ + MY + GSID +  IF KL  R++ +WN
Sbjct: 346 VSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWN 405

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            ++ G+ Q     E L +F ++  EG  PD  T   +L A
Sbjct: 406 AMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 40/457 (8%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S +Y S +++   S  + ++ K +H H    G      +GN  + +Y++ G+ DD     
Sbjct: 131 SYTYVS-ILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD----- 184

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                     A  VFD + E D+ SW  MI G A  G    A  
Sbjct: 185 --------------------------ARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFS 218

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLID 188
           +F +M+  G  P+  T+  +L+  +    G     K++H    ++G  +S++ +GN+LI 
Sbjct: 219 LFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGF-ISDLRVGNALIH 277

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  VF  M + D+ISWN++I G   +G G  A   F  M+  G+ PD  T
Sbjct: 278 MYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTT 337

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              ++N        +  K+V   +V+VG +S+  V SA + ++ +C  ++D+  +F++L 
Sbjct: 338 YLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA 397

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ 367
             +    N MI    +   G  AL LF  M RE   P   T   +LS+ +    +E   +
Sbjct: 398 VRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKE 457

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS AI +G   +  V ++L+ MYAK G+   + ++F  + +R++ +W  ++ GL Q+G 
Sbjct: 458 VHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGC 516

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             E   +F ++L EG+ PD  T  ++L AC   G ++
Sbjct: 517 GHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 186/343 (54%), Gaps = 7/343 (2%)

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSG 174
           MI GYA  GY++ A++++S+M+ +G +P+  T+  +L    S      GK+IH  +I+SG
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
              S+V +  +L++MY K G +  A  +F  M E ++ISW  +I G  + G G+ A  +F
Sbjct: 61  FQ-SDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M+  G+ P+ YT   ++NA      L+  K+V + +V  G   +  V +A + +++K 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             ++D+  +F+ +   D     VMI    ++G G+ A  LF  M R    P   T   +L
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 355 SSIPIP---PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           ++  I     +E   + H  A K+GF S+  V ++L+ MYAK GSID +  +F  +  RD
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           ++SWN ++ GL QNG   E   +F ++ +EG  PD  T  ++L
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 1/241 (0%)

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I G    GY E A+  +  MR  G  P+E T   ++ AC    +L  GK++ A  ++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F S+  V +A ++++ KC  ++D+  +F+++   +     VMI     YG G+ A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 337 LMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M RE   P  +T   +L++      +E   + HS A+ +G   +  V ++L+ MYAK+G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           SID +  +F  + +RD+ SW  ++ GL Q+GR  E   +F ++   G  P+  T  ++L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 456 A 456
           A
Sbjct: 241 A 241



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 37/238 (15%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + ++ K +H H    G  +   +GN  + +Y++ G+ DD  ++FD++ +++
Sbjct: 542 ILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERD 601

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             SW +                               MI G A  G    AL++F KM+L
Sbjct: 602 VYSWTV-------------------------------MIGGLAQHGRGLDALDLFVKMKL 630

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G +P+G++F  +LS  S A     G++   S+ +       +     ++D+ G+ G L 
Sbjct: 631 EGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLE 690

Query: 198 YAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            A    LNM  E     W +L+  C    YG L + +F +       P   +  ++++
Sbjct: 691 EAKHFILNMPIEPGDAPWGALLGACVT--YGNLEMAEFAAKERLKLKPKSASTYVLLS 746


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 190/604 (31%), Positives = 312/604 (51%), Gaps = 37/604 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + LI +C + KS    K++H H+ K G             L+S FG      +L D    
Sbjct: 5   TSLIAQCTNKKSLTTLKSLHTHILKSG------------SLFSFFGH-----KLID---- 43

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                      G +K   +  A K+FDE+P   +V+WNSMIS + S G +  A+E++S M
Sbjct: 44  -----------GYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNM 92

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P  +TFS +    S    +  G++ HG  +  G  +S+  +   ++DMY K G 
Sbjct: 93  LFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGK 152

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  + + D++ + +LI G    G    AL+ F  M  S   P+EYT++ V+ +
Sbjct: 153 MKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVS 212

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L  GK +  L VK G  S     ++ + ++SKCN +EDS+++F  L    +   
Sbjct: 213 CGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTW 272

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
              I    + G  EVAL +F+ M+R  I P  FTLS +L +   +  +E G Q H++ +K
Sbjct: 273 TSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVK 332

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G D N  V ++L+ +Y K G+++ +  +F  L + D+VS NT++    QNG   E L++
Sbjct: 333 LGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALEL 392

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FE L + GL P+ +T  ++LLACN  G V++G  +FS ++  + +    +HY C+IDLL 
Sbjct: 393 FERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLG 452

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +A +  +A  +       P    W ++L A  I+G+V++ E   ++M+D        + L
Sbjct: 453 RAKRFEEATMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHIL 511

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           LT  YA  G+W+ ++ +K   R   + K    SW+ I   ++TF AG+L H    +I  +
Sbjct: 512 LTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEM 571

Query: 615 LRLL 618
           L  L
Sbjct: 572 LHEL 575


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 179/568 (31%), Positives = 299/568 (52%), Gaps = 37/568 (6%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  +L++F+ I  P  ++W S+I  Y S G    +L  F  M   G+ P    F  +L +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA-------------- 199
            +       G+ +HG +IR GL   ++  GN+L++MY KL  L  +              
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDF-DLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEM 174

Query: 200 ------------------FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
                               +F  M E D++SWN++I+G   +G  E  L     M  + 
Sbjct: 175 TERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD +T+S V+    +  ++ +GK++   S++ G  ++  V S+ ID+++KC R+ DS 
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           R+F  L   D    N +I+   + G  +  L  F+ ML   I+P  ++ S ++ +     
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 362 VEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
             H G Q H    ++GFD N  +ASSL++MYAK G+I ++ +IF ++  RD+VSW  ++M
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIM 414

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G   +G+A + +++FE++  EG+ P+ +   AVL AC++GG VD+    F++M  ++G+ 
Sbjct: 415 GCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIA 474

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           PG EHYA + DLL +AG+L +A D    M   P  SIW ++L A  ++ ++ + E VA R
Sbjct: 475 PGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANR 534

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++++   +   Y LL   Y+   RW+   + +  MR+ GI K   CSWI +KN++Y F A
Sbjct: 535 ILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMA 594

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           G+  H   +KI   + +L   ME EG V
Sbjct: 595 GDESHPCYEKIREAMEVLVELMEKEGYV 622



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 216/451 (47%), Gaps = 24/451 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD-------VLQLF 73
           ++  C      +  +++HG++ ++G +   Y GN  +++YS+    ++         ++F
Sbjct: 112 VLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVF 171

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           DE+ ++   + ++    +L  D++    K+F+ +PE D+VSWN++I+G A  G  +  L 
Sbjct: 172 DEMTER---TRSVRTVSVLSEDSVR---KIFEMMPEKDLVSWNTIIAGNARNGLYEETLR 225

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           M  +M    ++P  FT S +L  ++       GK+IHG  IR GL  +++ + +SLIDMY
Sbjct: 226 MIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLD-ADIYVASSLIDMY 284

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K   +  +  VF  + E D ISWNS+I+GC  +G  +  L  F  M  +   P  Y+ S
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++ AC  L  L  GKQ+     + GF  N  + S+ +D+++KC  +  + ++F+++   
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR 404

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQF 368
           D      MI     +G    A+ELF+ M  E I+P       VL++     +  E    F
Sbjct: 405 DMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYF 464

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGR 427
           +SM    G        +++ ++  + G ++ + +    +      S W T++       R
Sbjct: 465 NSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSAC----R 520

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACN 458
               +D+ E++    L  D     A +L  N
Sbjct: 521 VHXNIDMAEKVANRILEVDPNNTGAYILLAN 551



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 186/419 (44%), Gaps = 37/419 (8%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           ++ S    +Q+H  +++     S++   + L+ +Y  + +L+ +  +F  +     ++W 
Sbjct: 18  SIKSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWK 75

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           S+I    + G    +L  F  M  SG  PD      V+ +C  L +L+ G+ +    ++V
Sbjct: 76  SVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRV 135

Query: 276 GFLSNSIVLSATIDLFSKCNRL-------------------------------EDSVR-L 303
           G   +    +A ++++SK   L                               EDSVR +
Sbjct: 136 GLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKI 195

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PV 362
           FE +   D    N +I+   R G  E  L + + M   +++P  FTLS VL  I     +
Sbjct: 196 FEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDI 255

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G + H  +I+ G D++  VASSL++MYAK   +  S  +F  L +RD +SWN+I+ G 
Sbjct: 256 SRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGC 315

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            QNG   E L  F ++L   + P   + ++++ AC +   +  G  +   +    G    
Sbjct: 316 VQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDEN 374

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
               + ++D+  + G +  A  I   M  +   S W +++   A++G       + E+M
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHGQAPDAIELFEQM 432



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 42/221 (19%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           A +   S S+ S ++  C    +    K +HG++ + GF+ + ++ +  +D+Y++ G   
Sbjct: 334 AKIKPKSYSF-SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIR 392

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              Q+FD +  ++ +S                               W +MI G A  G 
Sbjct: 393 TAKQIFDRMRLRDMVS-------------------------------WTAMIMGCALHGQ 421

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIH------GSMIRSGLSLSNVV 181
           +  A+E+F +M+ +G++P+   F  +L+  S   HG  +        SM R       V 
Sbjct: 422 APDAIELFEQMETEGIKPNHVAFMAVLTACS---HGGLVDEAWKYFNSMTRDFGIAPGVE 478

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS-WNSLISGC 221
              ++ D+ G+ G L  A+     M      S W +L+S C
Sbjct: 479 HYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSAC 519


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 178/541 (32%), Positives = 304/541 (56%), Gaps = 11/541 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           LK  N+  A  +FD+     VV+WNSMISGYA+ G    AL MF  M+L  VR S  +F+
Sbjct: 240 LKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFA 299

Query: 152 ILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            ++   + +      +Q+H S+++ G  L +  +  +L+  Y K   +  A  +F  +  
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGF-LFDQNIRTALMVAYSKCTAMLDALRLFKEIGC 358

Query: 209 L-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + +++SW ++ISG   +   E A+D F  M+  G  P+E+T S+++ A   +       +
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVI----SPSE 414

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           V A  VK  +  +S V +A +D + K  ++E++ ++F  +D  D    + M++ Y + G 
Sbjct: 415 VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 474

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLS--SIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
            E A+++F  + +  I+P EFT S +L+  +     +  G QFH  AIKS  DS+  V+S
Sbjct: 475 TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSS 534

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ MYAK G+I+S+ E+F +  ++DLVSWN+++ G  Q+G+A + LDVF+E+ +  +  
Sbjct: 535 ALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKM 594

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T   V  AC + G V++G   F  M  +  + P +EH +C++DL  +AGQL KA+ +
Sbjct: 595 DGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 654

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP   G +IW +IL A  ++   +L    AE+++ ++      Y LL+  YA  G W
Sbjct: 655 IENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDW 714

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +   +V+K+M +  + K  G SWI +KN+ Y+F AG+  H    +IY+ L  L+  ++D 
Sbjct: 715 QERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDL 774

Query: 626 G 626
           G
Sbjct: 775 G 775



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 262/505 (51%), Gaps = 46/505 (9%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  N     KVFDE+ E +VV+W ++ISGYA    +D  L +F +MQ +G +P+ FTF+
Sbjct: 139 MKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198

Query: 152 ILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L  ++       G Q+H  ++++GL    + + NSLI++Y K G +  A  +F   E 
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLD-KTIPVSNSLINLYLKCGNVRKARILFDKTEV 257

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             +++WNS+ISG   +G    AL  FYSMR +     E + + VI  C  L+ L   +Q+
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGF 327
               VK GFL +  + +A +  +SKC  + D++RLF+++      V    MIS + +   
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            E A++LF  M R+ +RP EFT S +L+++P I P    S+ H+  +K+ ++ ++ V ++
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTA 433

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++ Y K G ++ + ++F  +D +D+V+W+ ++ G  Q G     + +F EL + G+ P+
Sbjct: 434 LLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPN 493

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
             T +++L  C             +A     G   G++ +   I       +L  ++ ++
Sbjct: 494 EFTFSSILNVC-------------AATNASMG--QGKQFHGFAIK-----SRLDSSLCVS 533

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
           S            ++L   A  G+++  E V +R  +  L S   ++ +   YA  G+  
Sbjct: 534 S------------ALLTMYAKKGNIESAEEVFKRQREKDLVS---WNSMISGYAQHGQAM 578

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGI 591
             + V K M+K  + K+ G ++IG+
Sbjct: 579 KALDVFKEMKKRKV-KMDGVTFIGV 602



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 196/413 (47%), Gaps = 38/413 (9%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           + S S  + +I  C + K   F + +H  + K GF     +    +  YS+     D L+
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 72  LFDEIP-QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           LF EI    N +SW   + G L++D                                 + 
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDG-------------------------------KEE 380

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A+++FS+M+ +GVRP+ FT+S++L+ +       ++H  ++++    S+ V G +L+D Y
Sbjct: 381 AVDLFSEMKRKGVRPNEFTYSVILTAL-PVISPSEVHAQVVKTNYERSSTV-GTALLDAY 438

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            KLG +  A  VF  +++ DI++W+++++G   +G  E A+  F  +   G  P+E+T S
Sbjct: 439 VKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFS 498

Query: 251 IVINACTKLR-NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
            ++N C     ++ +GKQ    ++K    S+  V SA + +++K   +E +  +F++   
Sbjct: 499 SILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
            D    N MIS Y ++G    AL++F+ M +  ++    T   V ++      VE G ++
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 369 HSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIM 419
             + ++           S ++++Y++ G ++ + ++   + +      W TI+
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTIL 671



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 1/263 (0%)

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           LY A  +F      D  S+ SL+ G    G  + A   F ++   G   D    S V+  
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L +   G+Q+    +K GFL +  V ++ +D + K +  +D  ++F+++   +    
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIK 374
             +IS Y R    +  L LF  M  E  +P  FT +  L  +    V   G Q H++ +K
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G D    V++SL+ +Y K G++  +  +F K + + +V+WN+++ G   NG   E L +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282

Query: 435 FEELLEEGLPPDRITLAAVLLAC 457
           F  +    +     + A+V+  C
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLC 305



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 1/180 (0%)

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
           +RL ++  LF++    D      ++  + R G  + A  LF  + R  +       S VL
Sbjct: 41  SRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVL 100

Query: 355 S-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
             S  +     G Q H   IK GF  +  V +SL++ Y K  +     ++F ++ +R++V
Sbjct: 101 KVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVV 160

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           +W T++ G  +N    E L +F  +  EG  P+  T AA L      G   +G+ V + +
Sbjct: 161 TWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVV 220


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 200/679 (29%), Positives = 337/679 (49%), Gaps = 83/679 (12%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           FA+ +H H+   GF     + NR +D Y +         LFD+IP+ + ++    L    
Sbjct: 14  FARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYS 73

Query: 93  KSDNLDTALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
            + N+  A ++F+  P    D VS+N+MI+ ++       AL++F +M+  G  P  FTF
Sbjct: 74  AAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTF 133

Query: 151 SILLSTVS----SACHGKQIHGSMIRSG-LSLSNVV--------------LGNSLIDM-- 189
           S +L  +S       H +Q+H  + + G LS+ +V+              L NS + M  
Sbjct: 134 SSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAA 193

Query: 190 ------------------------YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
                                   Y +   L  A  +   M +   ++WN++ISG  + G
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRG 253

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK-VGFLSNSIVL 284
           + E A D    M   G   DEYT + VI+A +     + G+QV A  ++ V   S   VL
Sbjct: 254 FYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVL 313

Query: 285 S---ATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN------------------------- 316
           S   A I L+++C +L ++ R+F+++   D    N                         
Sbjct: 314 SVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR 373

Query: 317 ------VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFH 369
                 VMIS   + GFGE  L+LF  M  E + P ++  +  ++S  +   +++G Q H
Sbjct: 374 SLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLH 433

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           S  I+ G DS+  V ++L+ MY++ G ++++  +F+ +   D VSWN ++  L Q+G   
Sbjct: 434 SQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGV 493

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           + + ++E++L+E + PDRIT   +L AC++ G V +G   F  M+  YG+ P E+HY+ +
Sbjct: 494 QAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRL 553

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLLC+AG   +A ++T +MPF+PG  IWE++L    I+G+++L    A+R+++L     
Sbjct: 554 IDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQD 613

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y  L+  YA  G+W+ + RV+K+MR+ G+ K  GCSWI ++N ++ F   +  H    
Sbjct: 614 GTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVH 673

Query: 610 KIYLVLRLLTWEMEDEGCV 628
            +Y  L  L  EM   G V
Sbjct: 674 AVYRYLEQLVHEMRKLGYV 692



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 51/222 (22%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C    S D  + +H  + +LG ++   +GN  + +YSR G  +    +F  +P  + 
Sbjct: 417 IASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDS 476

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SW                               N+MI+  A  G+   A++++ KM  +
Sbjct: 477 VSW-------------------------------NAMIAALAQHGHGVQAIQLYEKMLKE 505

Query: 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG---LSLSNVVLG--------NSLIDMY 190
            + P   TF  +LS  S        H  +++ G        V  G        + LID+ 
Sbjct: 506 DILPDRITFLTILSACS--------HAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLL 557

Query: 191 GKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELAL 231
            + G+   A  V  +M  E     W +L++GC+  G  EL +
Sbjct: 558 CRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGI 599


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/542 (34%), Positives = 293/542 (54%), Gaps = 7/542 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D+L++A  + +  P   VV+W ++I+G    G    AL  FS M    VRP+ FTF  
Sbjct: 54  KLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPC 113

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   +       GKQ+H   ++ GL +++V +G S+ DMY KLG L  A+ VF  M   
Sbjct: 114 VLKASTGLRMDTTGKQLHALAVKEGL-INDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHR 172

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ +WN+ IS     G  E ++  F  +   G  PD  T    +NAC+    L  G Q+ 
Sbjct: 173 NLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLH 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              ++ G+  N  V +  ID + KC  +E S  +F+++   +    + +I+ Y +    E
Sbjct: 233 GFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEE 292

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  LF    +EDI PT+F +S VL +   +  +E G    ++A+K+  + N  VAS+L+
Sbjct: 293 KASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALV 352

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDR 447
           +MY K GSID++ + F  + +R+LVSWN ++ G    G A + + + EE+    G+ P  
Sbjct: 353 DMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSY 412

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           ++L   L AC+  G +  GM +F +MKE YGV PG EHYAC++DLL +AG +  A D   
Sbjct: 413 VSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIK 472

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MPF P  SIW ++L A  ++G  +L +  AE++ +L       + +L+  +A  GRWE 
Sbjct: 473 RMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEE 532

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED-EG 626
           +  V+  M++ GI K  G SWI + +RI+ F A +  H    +I  +L  L  EM+D  G
Sbjct: 533 VTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKDKSHEKDPEIQDILGKLRKEMQDAAG 592

Query: 627 CV 628
           C+
Sbjct: 593 CI 594



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 181/413 (43%), Gaps = 39/413 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H    K G     ++G    D+YS+ G  +D  ++FDE+P +               
Sbjct: 128 KQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHR--------------- 172

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            NL+T               WN+ IS     G  + ++  F ++   G +P   TF   L
Sbjct: 173 -NLET---------------WNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFL 216

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S       G Q+HG +IRSG    NV + N LID YGK G +  +  VF  M E + 
Sbjct: 217 NACSDKLGLGPGCQLHGFIIRSGYG-QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNS 275

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW+SLI+    +   E A   F   R     P ++ +S V+ AC  L  ++ G+ V AL
Sbjct: 276 VSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQAL 335

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK     N  V SA +D++ KC  ++++ + F  +   +    N ++  Y   G    A
Sbjct: 336 AVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKA 395

Query: 332 LELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSLM 388
           + L + M     I P+  +L C LS+      ++ G + F SM  + G +      + L+
Sbjct: 396 VALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLV 455

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
           ++  + G ++ + +   ++     +S W  ++     +G+        E+L E
Sbjct: 456 DLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFE 508



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 43/229 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +F +++     K     + ++ +  +D+Y + G+ D+  Q F+ +P+
Sbjct: 314 SSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPE 373

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPD--VVSWNSMISGYASC---GYSDYALE 133
           +N +SWN  L G     + + A+ + +E+      V S+ S+I   ++C   G     ++
Sbjct: 374 RNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMK 433

Query: 134 MFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +F  M+ + GV P    +         AC                        L+D+ G+
Sbjct: 434 IFESMKERYGVEPGPEHY---------AC------------------------LVDLLGR 460

Query: 193 LGVLYYAFGVFLNMEELDIIS-WNSLISGCFNSG---YGELALDQFYSM 237
            G++  A+     M     IS W +L+  C   G    G+LA ++ + +
Sbjct: 461 AGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFEL 509



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           A + + L+ MYAK   ++S+  I      R +V+W  ++ G  QNG     L  F ++L 
Sbjct: 42  AFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLS 101

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           + + P+  T   VL A + G  +D       A+  + G++        + D+  + G L 
Sbjct: 102 DCVRPNDFTFPCVLKA-STGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLN 160

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYG 529
            A  +   MP +     W + +  S ++G
Sbjct: 161 DAYKVFDEMPHR-NLETWNAYISNSVLHG 188


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/542 (34%), Positives = 293/542 (54%), Gaps = 7/542 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D+L++A  + +  P   VV+W ++I+G    G    AL  FS M    VRP+ FTF  
Sbjct: 54  KLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPC 113

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   +       GKQ+H   ++ GL +++V +G S+ DMY KLG L  A+ VF  M   
Sbjct: 114 VLKASTGLRMDTTGKQLHALAVKEGL-INDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHR 172

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ +WN+ IS     G  E ++  F  +   G  PD  T    +NAC+    L  G Q+ 
Sbjct: 173 NLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLH 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              ++ G+  N  V +  ID + KC  +E S  +F+++   +    + +I+ Y +    E
Sbjct: 233 GFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEE 292

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  LF    +EDI PT+F +S VL +   +  +E G    ++A+K+  + N  VAS+L+
Sbjct: 293 KASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALV 352

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDR 447
           +MY K GSID++ + F  + +R+LVSWN ++ G    G A + + + EE+    G+ P  
Sbjct: 353 DMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSY 412

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           ++L   L AC+  G +  GM +F +MKE YGV PG EHYAC++DLL +AG +  A D   
Sbjct: 413 VSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIK 472

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MPF P  SIW ++L A  ++G  +L +  AE++ +L       + +L+  +A  GRWE 
Sbjct: 473 RMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEE 532

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED-EG 626
           +  V+  M++ GI K  G SWI + +RI+ F A +  H    +I  +L  L  EM+D  G
Sbjct: 533 VTVVRNEMKEVGIKKGAGFSWITVDSRIHMFQAKDKSHEKDPEIQDILGKLRKEMQDAAG 592

Query: 627 CV 628
           C+
Sbjct: 593 CI 594



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 181/413 (43%), Gaps = 39/413 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H    K G     ++G    D+YS+ G  +D  ++FDE+P +               
Sbjct: 128 KQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHR--------------- 172

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            NL+T               WN+ IS     G  + ++  F ++   G +P   TF   L
Sbjct: 173 -NLET---------------WNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFL 216

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S       G Q+HG +IRSG    NV + N LID YGK G +  +  VF  M E + 
Sbjct: 217 NACSDKLGLGPGCQLHGFIIRSGYG-QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNS 275

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW+SLI+    +   E A   F   R     P ++ +S V+ AC  L  ++ G+ V AL
Sbjct: 276 VSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQAL 335

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK     N  V SA +D++ KC  ++++ + F  +   +    N ++  Y   G    A
Sbjct: 336 AVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKA 395

Query: 332 LELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSLM 388
           + L + M     I P+  +L C LS+      ++ G + F SM  + G +      + L+
Sbjct: 396 VALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLV 455

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
           ++  + G ++ + +   ++     +S W  ++     +G+        E+L E
Sbjct: 456 DLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFE 508



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 43/229 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +F +++     K     + ++ +  +D+Y + G+ D+  Q F+ +P+
Sbjct: 314 SSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPE 373

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPD--VVSWNSMISGYASC---GYSDYALE 133
           +N +SWN  L G     + + A+ + +E+      V S+ S+I   ++C   G     ++
Sbjct: 374 RNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMK 433

Query: 134 MFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +F  M+ + GV P    +         AC                        L+D+ G+
Sbjct: 434 IFESMKERYGVEPGPEHY---------AC------------------------LVDLLGR 460

Query: 193 LGVLYYAFGVFLNMEELDIIS-WNSLISGCFNSG---YGELALDQFYSM 237
            G++  A+     M     IS W +L+  C   G    G+LA ++ + +
Sbjct: 461 AGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFEL 509



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           A + + L+ MYAK   ++S+  I      R +V+W  ++ G  QNG     L  F ++L 
Sbjct: 42  AFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLS 101

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           + + P+  T   VL A + G  +D       A+  + G++        + D+  + G L 
Sbjct: 102 DCVRPNDFTFPCVLKA-STGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLN 160

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYG 529
            A  +   MP +     W + +  S ++G
Sbjct: 161 DAYKVFDEMPHR-NLETWNAYISNSVLHG 188


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 301/558 (53%), Gaps = 16/558 (2%)

Query: 83  SWNI-CLRGLL----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           SWN+  + G++    K   ++ A  +FD +PE D+V WN+MISGYA  G++  AL +  +
Sbjct: 62  SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLR 121

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKL 193
           M  +G RP   T   +L  V+       G  +HG ++R+G  SL NV    +L+DMY K 
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNV--STALVDMYSKC 179

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F  M+   ++SWNS+I G   SG  E A+  F  M   G  P   T+   +
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +AC  L +L++GK V  L  ++   S+  V+++ I ++SKC R++ +  +F+ L      
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV---LSSIPIPPVEHGSQFHS 370
             N MI  Y + G    AL  F  M   +I+P  FT+  V   L+ + IP        H 
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIP--RQAKWIHG 357

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + I+   D N  V ++L++MYAK G+I ++ ++F  ++ R +++WN ++ G   +G    
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKT 417

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           ++++F+E+ +  + P+ IT    L AC++ G V++G+  F +MK++YG+ P  +HY  ++
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG+L +A D    MP +PG +++ ++L A  I+ +V L E  A  +  L      
Sbjct: 478 DLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGG 537

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            + LL   YA    W  + +V+ +M K+G+ K  GCS + I N +++F +G   H   +K
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKK 597

Query: 611 IYLVLRLLTWEMEDEGCV 628
           IY  L  L  E+   G V
Sbjct: 598 IYSYLETLVDEIRAAGYV 615



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 192/380 (50%), Gaps = 20/380 (5%)

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSG 174
           M+ GYA     D AL  FS+M+   VRP  + F+ LL      S    GK+IHGS+I SG
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
            S  N+     +++MY K   +  A+ +F  M E D++ WN++ISG   +G+ ++AL   
Sbjct: 61  FSW-NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M   G+ PD  TI  ++ A    R L  G  V    ++ GF S   V +A +D++SKC
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             +  +  +F+ +D       N MI  Y + G  E A+ +FQ ML E ++PT  T+   L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +   +  +E G   H +  +   DS+  V +SL+ MY+K   +D + +IF  L  + LV
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN-----------YG-- 460
           SWN +++G  QNG   E L+ F E+    + PD  T+ +V+ A             +G  
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 461 --GFVDKGMLVFSAMKEEYG 478
              F+DK + V +A+ + Y 
Sbjct: 360 IRRFLDKNVFVMTALVDMYA 379



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 180/391 (46%), Gaps = 37/391 (9%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
            +HG++ + GF +   +    +D+YS+ G+      +FD +  +  +SWN          
Sbjct: 152 AVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWN---------- 201

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
                                SMI GY   G ++ A+ +F KM  +GV+P+  T    L 
Sbjct: 202 ---------------------SMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 156 TVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +       GK +H  + +  L  S+V + NSLI MY K   +  A  +F N+    ++
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLD-SDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN++I G   +G    AL+ F  M+     PD +T+  VI A  +L    + K +  L 
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           ++     N  V++A +D+++KC  +  + +LF+ ++       N MI  YG +G G+ ++
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSV 419

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAVVASSLMEM 390
           ELF+ M +  I+P + T  C LS+      VE G   F SM    G +       +++++
Sbjct: 420 ELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDL 479

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
             + G ++ + +   K+  +  ++    M+G
Sbjct: 480 LGRAGRLNQAWDFIQKMPIKPGITVYGAMLG 510



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 124/287 (43%), Gaps = 36/287 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      +  K +H  + +L  ++   + N  + +YS+    D    +F  +  K  +SW
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               +MI GYA  G  + AL  F +MQ + ++
Sbjct: 302 N-------------------------------AMILGYAQNGCVNEALNAFCEMQSRNIK 330

Query: 145 PSGFTF-SIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  FT  S++  L+ +S     K IHG +IR  L   NV +  +L+DMY K G ++ A  
Sbjct: 331 PDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLD-KNVFVMTALVDMYAKCGAIHTARK 389

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M    +I+WN++I G    G G+ +++ F  M+     P++ T    ++AC+    
Sbjct: 390 LFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGL 449

Query: 262 LDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +++G   F ++    G         A +DL  +  RL  +    +++
Sbjct: 450 VEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKM 496


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/561 (31%), Positives = 297/561 (52%), Gaps = 20/561 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K    + A ++F  +   D+V+W+++I+     GY + AL +F +MQ Q ++P+  T   
Sbjct: 376 KCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVT--- 432

Query: 153 LLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            L ++  AC        GK IH   +++ +  S++  G +L+ MY K G    A   F  
Sbjct: 433 -LMSILPACADLSLLKLGKSIHCFTVKADMD-SDLSTGTALVSMYAKCGFFTAALTTFNR 490

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   DI++WNSLI+G    G    A+D FY +R S  +PD  T+  V+ AC  L +LD+G
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGR 324
             +  L VK+GF S+  V +A ID+++KC  L  +  LF + D   D    NV+I+ Y +
Sbjct: 551 TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  + A+  F  M  E+  P   T   VL +   +     G  FH+  I+ GF SN +V
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +SL++MYAK G +  S ++F ++D +D VSWN ++ G   +G     + +F  + E  +
Sbjct: 671 GNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D ++  +VL AC + G V++G  +F +M ++Y + P  EHYAC++DLL +AG   + +
Sbjct: 731 QIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
                MP +P   +W ++L +  ++ +VKL E   + ++ L+  +P  + +L+  YA  G
Sbjct: 791 GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RW    + +  M   G+ K  GCSW+ +KN+++ F  G+  H   + ++L+   L  +ME
Sbjct: 851 RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 624 ------DEGCVYLECDKLDVE 638
                 D  CV    ++ D E
Sbjct: 911 KIGYVPDRSCVLQNVEEEDKE 931



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 193/364 (53%), Gaps = 7/364 (1%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           D A  VFD  P P  + WNSMI  Y      + ALEM+  M  +G+ P  +TF+ +L   
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + A +   G   HG + R GL   +V +G  L+DMY K+G L  A  VF  M + D+++W
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLE-RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAW 198

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++I+G   S     A+D F SM+  G  P   ++  +     KL N++  + +     +
Sbjct: 199 NAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFR 258

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
             F  +S V +  IDL+SKC  ++ + R+F+Q+   D      M++ Y   G     LEL
Sbjct: 259 RDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLEL 316

Query: 335 FQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M   ++R  + + +S  L++     +E G + H  A++   DS+ +VA+ LM MYAK
Sbjct: 317 FDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAK 376

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G  + + ++F  L  RDLV+W+ I+  L Q G   E L +F+E+  + + P+R+TL ++
Sbjct: 377 CGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSI 436

Query: 454 LLAC 457
           L AC
Sbjct: 437 LPAC 440



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 248/505 (49%), Gaps = 41/505 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + +  ++IHG++F+  F+  + + N  +DLYS+ G                         
Sbjct: 245 NIELCRSIHGYVFRRDFS--SAVSNGLIDLYSKCG------------------------- 277

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                 ++D A +VFD++ + D VSW +M++GYA  G     LE+F KM+L  VR +  +
Sbjct: 278 ------DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVS 331

Query: 150 -FSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
             S  L+   +     GK+IHG  ++  +  S++++   L+ MY K G    A  +F  +
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRID-SDILVATPLMVMYAKCGETEKAKQLFWGL 390

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +  D+++W+++I+    +GY E AL  F  M+     P+  T+  ++ AC  L  L  GK
Sbjct: 391 QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +   +VK    S+    +A + +++KC     ++  F ++   D    N +I+ Y + G
Sbjct: 451 SIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               A+++F  +    I P   T+  V+ +   +  ++ G+  H + +K GF+S+  V +
Sbjct: 511 DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +L++MYAK GS+ S+  +F K D  +D V+WN I+    QNG A E +  F ++  E   
Sbjct: 571 ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 630

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T  +VL A  Y     +GM  F A   + G +        +ID+  + GQL  +  
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGM-AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEK 689

Query: 505 ITSTMPFQPGCSIWESILRASAIYG 529
           + + M  +   S W ++L   A++G
Sbjct: 690 LFNEMDHKDTVS-WNAMLSGYAVHG 713



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 228/499 (45%), Gaps = 39/499 (7%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           HG + + G     ++G   +D+YS+ G                               +L
Sbjct: 152 HGEIDRRGLERDVFIGAGLVDMYSKMG-------------------------------DL 180

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
             A +VFD++P+ DVV+WN+MI+G +       A++ F  MQL GV PS  +   L   +
Sbjct: 181 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGI 240

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
               +    + IHG + R   S +   + N LID+Y K G +  A  VF  M + D +SW
Sbjct: 241 CKLSNIELCRSIHGYVFRRDFSSA---VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSW 297

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            ++++G  ++G     L+ F  M+      ++ +      A  +  +L+KGK++   +++
Sbjct: 298 GTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ 357

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
               S+ +V +  + +++KC   E + +LF  L   D    + +I+   + G+ E AL L
Sbjct: 358 QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           FQ M  + ++P   TL  +L +   +  ++ G   H   +K+  DS+    ++L+ MYAK
Sbjct: 418 FQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAK 477

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G   ++   F ++  RD+V+WN+++ G  Q G     +D+F +L    + PD  T+  V
Sbjct: 478 CGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGV 537

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           + AC     +D+G  +   +  + G          +ID+  + G L  A  + +   F  
Sbjct: 538 VPACALLNDLDQGTCI-HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTK 596

Query: 514 GCSIWESILRASAIYGDVK 532
               W  I+ A    G  K
Sbjct: 597 DEVTWNVIIAAYMQNGHAK 615



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 145/308 (47%), Gaps = 15/308 (4%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           QIH  +I SG    + +    LI++Y        A  VF +      I WNS+I     S
Sbjct: 50  QIHAQIIVSGFKHHHSI--THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRS 107

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                AL+ +Y M   G  PD+YT + V+ ACT   NL +G        + G   +  + 
Sbjct: 108 KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIG 167

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +  +D++SK   L+ +  +F+++ + D    N MI+   +      A++ F+ M    + 
Sbjct: 168 AGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVE 227

Query: 345 PTEFTL------SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
           P+  +L       C LS+I +    HG  F         D ++ V++ L+++Y+K G +D
Sbjct: 228 PSSVSLLNLFPGICKLSNIELCRSIHGYVFRR-------DFSSAVSNGLIDLYSKCGDVD 280

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F ++  +D VSW T+M G   NG   E L++F+++    +  ++++  +  LA  
Sbjct: 281 VARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAA 340

Query: 459 YGGFVDKG 466
               ++KG
Sbjct: 341 ETIDLEKG 348



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 189/430 (43%), Gaps = 47/430 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP-QK 79
           ++  C      D    IHG + KLGF +  ++ N  +D+Y++ G+      LF++    K
Sbjct: 537 VVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTK 596

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + ++WN+                               +I+ Y   G++  A+  F +M+
Sbjct: 597 DEVTWNV-------------------------------IIAAYMQNGHAKEAISSFHQMR 625

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           L+   P+  TF  +L     +++   G   H  +I+ G  LSN ++GNSLIDMY K G L
Sbjct: 626 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF-LSNTLVGNSLIDMYAKCGQL 684

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            Y+  +F  M+  D +SWN+++SG    G+G+ A+  F  M+ S    D  +   V++AC
Sbjct: 685 XYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC 744

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAV 314
                +++G+++F ++S K     +    +  +DL  +    ++++   + +    D  V
Sbjct: 745 RHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGV 804

Query: 315 INVMIST---YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSM 371
              ++ +   +     GEVAL+   L+  E   P  F    VLSSI            + 
Sbjct: 805 WGALLGSCRMHSNVKLGEVALD--HLVKLEPRNPAHFV---VLSSIYAQSGRWADAGKAR 859

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           +  +          S +E+  K  +     +   +L+   L+ WNT++  + + G   + 
Sbjct: 860 SKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL-WNTLLEKMEKIGYVPDR 918

Query: 432 LDVFEELLEE 441
             V + + EE
Sbjct: 919 SCVLQNVEEE 928


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 202/700 (28%), Positives = 343/700 (49%), Gaps = 105/700 (15%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLY---SRFGTSDDVLQ---------------------- 71
           +H HL K GF++  Y+  + L LY    +F   D +++                      
Sbjct: 43  LHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGN 102

Query: 72  ------LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
                 LFDE+P++N +SW+  + GL+K   ++ ++  F+  P  +VVSW + ISG+   
Sbjct: 103 LVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRN 162

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSG---- 174
           G +  AL++F ++   GVRP+  TF+    +V  AC        G  I G ++++G    
Sbjct: 163 GLNFEALKLFFRLLESGVRPNDVTFT----SVVRACGELGDFGLGMSILGLVVKAGFEHY 218

Query: 175 LSLSN--------------------------VVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           LS+SN                          VV   +++D Y + G L  A  +F  M E
Sbjct: 219 LSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPE 278

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            + ISW+++I+    SGY E AL  F  M   G+ P+    +  ++A   LR L  G  +
Sbjct: 279 RNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINI 338

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
                K+G   +  + S+ IDL+ KC + +D   +F+ +   +    N M+  Y   G  
Sbjct: 339 HGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRL 398

Query: 329 -------------------------------EVALELFQLMLREDIRPTEFTLSCVLSS- 356
                                          E  LE+F  +L     P + T S VL + 
Sbjct: 399 EETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCAC 458

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             I  ++ G   H   IK G   +  V ++L +MYAK G I SS ++F ++ +++ +SW 
Sbjct: 459 ASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWT 518

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
            ++ GL ++G A E+L +FEE+     + P+ + L +VL AC++ G VDKG+  F++M++
Sbjct: 519 VMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEK 578

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
            YG+ P  +HY C++DLL ++G+L +A +   T+PFQP  + W ++L     Y D K+ E
Sbjct: 579 VYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAE 638

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
             A+++  L   +   Y LL+  YA  GRW  +  ++K+MR+ G+ K  GCSW+ ++N++
Sbjct: 639 RTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQV 698

Query: 596 YTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL 635
           ++F + +  H    +IY  L+LL  EM+    V ++C K+
Sbjct: 699 HSFYSEDGSHSQSNEIYGTLQLLRSEMKCFKKVGIQCTKI 738



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 185/371 (49%), Gaps = 36/371 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C     F    +I G + K GF  +  + N  + L  R G  D   ++FD + +
Sbjct: 188 TSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEK 247

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SW   L   +++ +L  A ++FDE+PE + +SW++MI+ Y+  GY++ AL++FSKM
Sbjct: 248 RDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKM 307

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G +P+   F+  LS ++S      G  IHG + + G+   +V +G+SLID+Y K G 
Sbjct: 308 VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGID-KDVFIGSSLIDLYCKCGK 366

Query: 196 LYYAFGVFLNMEELDIISWNSLISG--------------------------CFNSGY--- 226
                 VF  + E +++ WNS++ G                             +GY   
Sbjct: 367 PDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLEN 426

Query: 227 --GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
              E  L+ F ++  SG +P++ T S V+ AC  + +LDKG  V    +K+G   +  V 
Sbjct: 427 EQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG 486

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDI 343
           +A  D+++KC  +  S ++FE++   +     VMI      GF   +L LF+ M R  ++
Sbjct: 487 TALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEV 546

Query: 344 RPTEFTLSCVL 354
            P E  L  VL
Sbjct: 547 APNELMLLSVL 557



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 145/276 (52%), Gaps = 6/276 (2%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S ++      IHGH+ K+G +   ++G+  +DLY + G  DD   +FD I +KN + WN 
Sbjct: 328 SLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNS 387

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
            + G   +  L+   ++F+ IPE + VSW ++I+GY      +  LE+F+ + + G  P+
Sbjct: 388 MVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPN 447

Query: 147 GFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             TFS +L   ++++S   G  +HG +I+ G+   ++ +G +L DMY K G +  +  VF
Sbjct: 448 KSTFSSVLCACASIASLDKGMNVHGKIIKLGIQY-DIFVGTALTDMYAKCGDIGSSKQVF 506

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNL 262
             M E + ISW  +I G   SG+   +L  F  M R S  +P+E  +  V+ AC+    +
Sbjct: 507 ERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLV 566

Query: 263 DKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRL 297
           DKG   F    KV G        +  +DL S+  RL
Sbjct: 567 DKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRL 602


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 195/646 (30%), Positives = 337/646 (52%), Gaps = 86/646 (13%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H  + + GF ++ ++ N  + +Y + G       +FD++          C RG+      
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL----------CHRGI------ 325

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV-RPSGFTFSILL-- 154
                        D+VSWNS++S Y     ++ AL +F KM  + +  P   +   +L  
Sbjct: 326 ------------QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPA 373

Query: 155 -STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME------ 207
            ++++++  G+Q+HG  IRSGL + +V +GN+++DMY K G +  A  VF  M+      
Sbjct: 374 CASLAASLRGRQVHGFSIRSGL-VDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVS 432

Query: 208 -----------------------------ELDIISWNSLISGCFNSGYGELALDQFYSMR 238
                                        ELD+++W ++I+G    G G  ALD F  M 
Sbjct: 433 WNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMC 492

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS----------IVLSATI 288
             G  P+  T+  +++AC  +  L  GK+    ++K  F+ N            V++  I
Sbjct: 493 DCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIK--FILNLDGPDPGADDLKVINGLI 550

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQLMLRED--IR 344
           D+++KC   E + ++F+ +   D  V+   VMI  Y ++G    AL+LF  M + D  I+
Sbjct: 551 DMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIK 610

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTE 402
           P +FTLSC L +   +  +  G Q H+  +++ + S  + VA+ L++MY+K+G +D++  
Sbjct: 611 PNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQI 670

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  + +R+ VSW ++M G   +GR  + L VF+E+ +  L PD IT   VL AC++ G 
Sbjct: 671 VFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGM 730

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           VD G+  F+ M +++GV PG EHYAC++DL  +AG+LG+A+ + + MP +P   +W ++L
Sbjct: 731 VDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALL 790

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  ++ +V+L E  A R+++L+  +   Y+LL+  YA   RW+ + R++  M++ GI K
Sbjct: 791 SACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKK 850

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             GCSWI  +  + TF  G+  H   Q+IY  L  L   ++  G V
Sbjct: 851 RPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYV 896



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 232/497 (46%), Gaps = 62/497 (12%)

Query: 108 PEPD-VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHG 163
           P P  V  WN +I      G       ++ +M+  G  P  +TF  +    ++      G
Sbjct: 219 PSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLG 278

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISG 220
             +H ++ RSG + SNV + N+++ MYGK G L +A  +F ++      D++SWNS++S 
Sbjct: 279 ASLHATVSRSGFA-SNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSA 337

Query: 221 CFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
              +     AL  F+ M      SPD  ++  ++ AC  L    +G+QV   S++ G + 
Sbjct: 338 YMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD 397

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V +A +D+++KC ++E++ ++F+++   D    N M++ Y + G  E AL LF+ M 
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMT 457

Query: 340 REDI-----------------------------------RPTEFTLSCVLSS-IPIPPVE 363
            E+I                                   RP   TL  +LS+ + +  + 
Sbjct: 458 EENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALL 517

Query: 364 HGSQFHSMAIK-----SGFDSNA---VVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLV 413
           HG + H  AIK      G D  A    V + L++MYAK  S + + ++F  V    RD+V
Sbjct: 518 HGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVV 577

Query: 414 SWNTIMMGLTQNGRAAETLDVFEEL--LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           +W  ++ G  Q+G A   L +F  +  +++ + P+  TL+  L+AC     +  G  V +
Sbjct: 578 TWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHA 637

Query: 472 -AMKEEYG-VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
             ++  YG VM    +  C+ID+  ++G +  A  +   MP +   S W S++    ++G
Sbjct: 638 YVLRNFYGSVMLFVAN--CLIDMYSKSGDVDTAQIVFDNMPQRNAVS-WTSLMTGYGMHG 694

Query: 530 DVKLTENVAERMMDLQL 546
             +    V + M  + L
Sbjct: 695 RGEDALRVFDEMRKVPL 711



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 200/404 (49%), Gaps = 21/404 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  +    + +HG   + G     ++GN  +D+Y++ G  ++  ++F  +  K+
Sbjct: 370 ILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKD 429

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEP----DVVSWNSMISGYASCGYSDYALEMFS 136
            +SWN  + G  ++  L+ AL +F+ + E     DVV+W ++I+GYA  G    AL++F 
Sbjct: 430 VVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFR 489

Query: 137 KMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLG-------NSL 186
           +M   G RP+  T   LLS   +V +  HGK+ H   I+  L+L     G       N L
Sbjct: 490 QMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGL 549

Query: 187 IDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS- 243
           IDMY K      A  +F  ++ ++ D+++W  +I G    G    AL  F  M     S 
Sbjct: 550 IDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSI 609

Query: 244 -PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSV 301
            P+++T+S  + AC +L  L  G+QV A  ++  + S  + V +  ID++SK   ++ + 
Sbjct: 610 KPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQ 669

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
            +F+ + + +      +++ YG +G GE AL +F  M +  + P   T   VL +     
Sbjct: 670 IVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSG 729

Query: 362 -VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            V+HG   F+ M+   G D      + +++++ + G +  + ++
Sbjct: 730 MVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKL 773



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 148/330 (44%), Gaps = 16/330 (4%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---- 209
           L   +S  H K +H   I  GL      L  +LI  Y       YA    L +E L    
Sbjct: 168 LKECNSLAHAKLLHQQSIMQGLLFH---LATNLIGTYIASNSTAYAI---LLLERLPPSP 221

Query: 210 -DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             +  WN LI    + G        +  M+  G++PD YT   V  AC  L +L  G  +
Sbjct: 222 SSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASL 281

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRY 325
            A   + GF SN  V +A + ++ KC  L  +  +F+ L      D    N ++S Y   
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341

Query: 326 GFGEVALELFQLM-LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                AL LF  M  R  + P   +L  +L +   +     G Q H  +I+SG   +  V
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFV 401

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +++++MYAK G ++ + ++F ++  +D+VSWN ++ G +Q GR    L +FE + EE +
Sbjct: 402 GNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENI 461

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
             D +T  AV+      G   + + VF  M
Sbjct: 462 ELDVVTWTAVITGYAQRGQGCEALDVFRQM 491


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 295/547 (53%), Gaps = 20/547 (3%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           ++ + A KVFD++ E +VV+W  MI+     G+   A+  F  M L G     FT    L
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT----L 272

Query: 155 STVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFL 204
           S+V SAC        GKQ+H   IRSGL + +V    SL+DMY K    G +     VF 
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGL-VDDVEC--SLVDMYAKCSADGSVDDCRKVFD 329

Query: 205 NMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNL 262
            ME+  ++SW +LI+G   N      A++ F  M   G+  P+ +T S    AC  L + 
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             GKQV   + K G  SNS V ++ I +F K +R+ED+ R FE L   +    N  +   
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            R    E A +L   +   ++  + FT + +LS +  +  +  G Q HS  +K G   N 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V ++L+ MY+K GSID+++ +F  ++ R+++SW +++ G  ++G A   L+ F +++EE
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ P+ +T  A+L AC++ G V +G   F++M E++ + P  EHYAC++DLLC+AG L  
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A +  +TMPFQ    +W + L A  ++ + +L +  A ++++L    P  Y  L+  YA 
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G+WE    +++ M++  + K  GCSWI + ++I+ F  G+  H    +IY  L  L  E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749

Query: 622 MEDEGCV 628
           ++  G V
Sbjct: 750 IKRCGYV 756



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/560 (23%), Positives = 268/560 (47%), Gaps = 51/560 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C+  + F   K +H  L +      + L N  + LYS+ G S     +F+ + +
Sbjct: 66  SSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRR 125

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                         + DVVSW++M++ Y + G    A+++F + 
Sbjct: 126 ----------------------------FGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-LG 194
              G+ P+ + ++ ++   S++     G+   G ++++G   S+V +G SLIDM+ K   
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               A+ VF  M EL++++W  +I+ C   G+   A+  F  M  SG+  D++T+S V +
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWD 311
           AC +L NL  GKQ+ + +++ G + +  V  + +D+++KC+    ++D  ++F++++  D
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRME--D 333

Query: 312 YAVIN--VMISTYGRY-GFGEVALELFQLMLRE-DIRPTEFTLSCVLSS---IPIPPVEH 364
           ++V++   +I+ Y +       A+ LF  M+ +  + P  FT S    +   +  P V  
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV-- 391

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q    A K G  SN+ VA+S++ M+ K+  ++ +   F  L +++LVS+NT + G  +
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           N    +   +  E+ E  L     T A++L      G + KG  + S +  + G+   + 
Sbjct: 452 NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCNQP 510

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG-DVKLTENVAERMMD 543
               +I +  + G +  A  + + M  +   S W S++   A +G  +++ E   + + +
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVIS-WTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 544 LQLPSPLPYSLLTQAYAMRG 563
              P+ + Y  +  A +  G
Sbjct: 570 GVKPNEVTYVAILSACSHVG 589



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 169/342 (49%), Gaps = 18/342 (5%)

Query: 131 ALEMFSKMQLQGVRP-SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
           A+     M   G+RP    TFS LL +   A     GK +H  +I   +   + VL NSL
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIE-PDSVLYNSL 103

Query: 187 IDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           I +Y K G    A  VF  M      D++SW+++++   N+G    A+  F      G  
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATIDLFSKC-NRLEDSV 301
           P++Y  + VI AC+    +  G+      +K G F S+  V  + ID+F K  N  E++ 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           ++F+++   +     +MI+   + GF   A+  F  M+       +FTLS V S+   + 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT---GSIDSSTEIFVKLDKRDLVSWNT 417
            +  G Q HS AI+SG   +  V  SL++MYAK    GS+D   ++F +++   ++SW  
Sbjct: 284 NLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341

Query: 418 IMMGLTQN-GRAAETLDVFEELLEEG-LPPDRITLAAVLLAC 457
           ++ G  +N   A E +++F E++ +G + P+  T ++   AC
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 36/271 (13%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S  + + HV     ++ S     C +       K + G  FK G  +++ + N  + ++ 
Sbjct: 361 SEMITQGHVEPNHFTF-SSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFV 419

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
           +    +D  + F+ + +KN +S+N  L G  ++ N + A K+  EI E ++         
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL--------- 470

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLS 178
                               GV  S FTF+ LLS    V S   G+QIH  +++ GLS +
Sbjct: 471 --------------------GV--SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
             V  N+LI MY K G +  A  VF  ME  ++ISW S+I+G    G+    L+ F  M 
Sbjct: 509 QPVC-NALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMI 567

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
             G  P+E T   +++AC+ +  + +G + F
Sbjct: 568 EEGVKPNEVTYVAILSACSHVGLVSEGWRHF 598



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 331 ALELFQLMLREDIRPTE-FTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           A+    LM R+ IRP +  T S +L S I       G   H+  I+   + ++V+ +SL+
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 389 EMYAKTGSIDSSTEIF---VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            +Y+K+G    + ++F    +  KRD+VSW+ +M     NGR  + + VF E LE GL P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 446 DRITLAAVLLACNYGGFVDKGMLVF 470
           +     AV+ AC+   FV  G +  
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTL 189


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 305/535 (57%), Gaps = 10/535 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A +VFD +PE + VSWN++I+GY   G    ALE+F +M+ +G+ P   TF+ 
Sbjct: 140 KCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFAS 199

Query: 153 LLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL- 209
           LL+ V   S     Q+HG +++ G +L   VL N+ I  Y + G L  +  +F  + ++ 
Sbjct: 200 LLTAVEGPSCFLMHQLHGKIVKYGSALGLTVL-NAAITAYSQCGSLKDSRRIFDGIGDIR 258

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLD-KGKQ 267
           D+ISWN+++    ++G  + A+  F  M + SG  PD Y+ + +I++C++  + D +G+ 
Sbjct: 259 DLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRV 318

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWDYAVINVMISTYGR 324
           +  L +K      + V +A I ++++ N    +ED+ + F  L   D    N M++ Y +
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G    AL+ F+ M  E++R  E+  S  L SS  +  ++ G Q H + I SGF SN  V
Sbjct: 379 HGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFV 438

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +SSL+ MY+K+G ID + + F + DK   V WN ++ G  Q+G+A     +F E+L+   
Sbjct: 439 SSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
           P D IT   ++ +C++ G VD+G  + + M+ +YGV    EHYAC +DL  +AGQL KA 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +  +MPF+P   +W ++L A  I+G+V+L  +VA  +   +      Y LL+  Y+  G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
            W     V++VM+K G++KV G S I +KN +++FNA +  H    +IY +LR+L
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSLIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 34/393 (8%)

Query: 84  WNICLRGLLKS--DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           WN  L    +S  D L  A +VFDE+P  D VSWN++++ +A+ G    A  +   M  Q
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQ 87

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G+  + F     L + + A     G Q+    ++SGL+ +NV   ++L+D+Y K G +  
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLA-NNVFAASALLDVYAKCGRVRD 146

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  M E + +SWN+LI+G   SG    AL+ F  M   G  PDE T + ++ A   
Sbjct: 147 ARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAV-- 204

Query: 259 LRNLDKGKQVFALS------VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWD 311
                +G   F +       VK G      VL+A I  +S+C  L+DS R+F+ + D  D
Sbjct: 205 -----EGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQ--- 367
               N M+  Y   G  + A++ F  M++E  + P  ++ + ++SS      EHG     
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCS----EHGHDDHQ 315

Query: 368 ---FHSMAIKSGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMG 421
               H + IKS  +    V ++L+ MY +      ++ + + F  L  +D VSWN+++ G
Sbjct: 316 GRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTG 375

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +Q+G +A+ L  F  +  E +  D    +A L
Sbjct: 376 YSQHGLSADALKFFRCMCSENVRTDEYAFSAAL 408



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 161/332 (48%), Gaps = 15/332 (4%)

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV--LYYAFGVFLNMEELDIISWNSL 217
           A    + H S+++SG +       N L+  Y +     L  A  VF  +   D +SWN+L
Sbjct: 7   AVAAARSHASLLKSGFAAPTP--WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNAL 64

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           ++    SG    A     +M   G + + + +   + +    R    G Q+ +L++K G 
Sbjct: 65  LAAHAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGL 124

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
            +N    SA +D+++KC R+ D+ ++F+ +   +    N +I+ Y   G    ALELF  
Sbjct: 125 ANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLE 184

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           M RE + P E T + +L+++  P      Q H   +K G      V ++ +  Y++ GS+
Sbjct: 185 MEREGLVPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSL 244

Query: 398 DSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDRITLAAVLL 455
             S  IF  + D RDL+SWN ++   T NG   E +  F  +++E G+ PD  +  +++ 
Sbjct: 245 KDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIIS 304

Query: 456 AC------NYGGFVDKGMLVFSAMKEEYGVMP 481
           +C      ++ G V  G+++ SA++   GV P
Sbjct: 305 SCSEHGHDDHQGRVIHGLVIKSALE---GVTP 333



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 191/438 (43%), Gaps = 47/438 (10%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-KNCISWNICLRGLLKSD 95
           +HG + K G      + N  +  YS+ G+  D  ++FD I   ++ ISW           
Sbjct: 215 LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISW----------- 263

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTFSILL 154
                               N+M+  Y   G  D A++ F + MQ  GV P  ++F+ ++
Sbjct: 264 --------------------NAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSII 303

Query: 155 STVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGVFLNME 207
           S+ S   H    G+ IHG +I+S L     V  N+LI MY +     ++  A+  F ++ 
Sbjct: 304 SSCSEHGHDDHQGRVIHGLVIKSALEGVTPVC-NALIAMYTRYNENCMMEDAYKCFNSLV 362

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D +SWNS+++G    G    AL  F  M       DEY  S  + + ++L  L  GKQ
Sbjct: 363 LKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ 422

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  L +  GF SN  V S+ I ++SK   ++D+ + FE+ D+      N MI  Y ++G 
Sbjct: 423 IHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQ 482

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVAS 385
            E    LF  ML+        T   +++S      V+ GS+  ++M  K G        +
Sbjct: 483 AENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYA 542

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             +++Y + G +D + ++   +  + D + W T++     +G      DV   L    + 
Sbjct: 543 CGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLF---VA 599

Query: 445 PDRITLAAVLLACNYGGF 462
             R     VLL+  Y G 
Sbjct: 600 EPRQHSTYVLLSSMYSGL 617



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 41/209 (19%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
               K IHG +   GF ++ ++ +  + +YS+ G  DD  + F+E  + + + W      
Sbjct: 417 LQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW------ 470

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                    N+MI GYA  G ++    +F++M  +       TF
Sbjct: 471 -------------------------NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITF 505

Query: 151 SILLSTVSSAC---HGKQIHGSM-IRSG--LSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             L+++ S A     G +I  +M  + G  L + +   G   +D+YG+ G L  A  +  
Sbjct: 506 VGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACG---VDLYGRAGQLDKAKKLID 562

Query: 205 NME-ELDIISWNSLISGCFNSGYGELALD 232
           +M  E D + W +L+  C   G  ELA D
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASD 591


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/614 (29%), Positives = 320/614 (52%), Gaps = 48/614 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC+       A+ +HGH+ K G  A  ++    +++Y R  +S D            
Sbjct: 82  LLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRD------------ 129

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A ++FD +P+ +VV+W ++I+G+        ALE+F +M  
Sbjct: 130 -------------------ARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLE 170

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T   +LS  S+A     G+Q+HG  I+ G   +   +GNSL  +Y K G L 
Sbjct: 171 LGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGAD-TITSMGNSLCRLYCKSGDLE 229

Query: 198 YAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
                F    + ++I+W ++IS C  +  Y +L L  F  M   G  P+E+T++ V++ C
Sbjct: 230 SGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               ++  GKQV A   KVG  +N  V ++T+ L+ +    ++++RLFE++D       N
Sbjct: 290 GARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWN 349

Query: 317 VMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            MIS Y +              G  AL+LF+ ++R +++P  FT S +LS    +  +E 
Sbjct: 350 AMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQ 409

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  IK+G  S+ VV S+L+ MY K GSI+ +T+ FV++  R  V+W +++ G +Q
Sbjct: 410 GEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQ 469

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +GR+ + + +FE+++  G  P+ IT  ++L AC+Y G V++    F  M+ EY + P  +
Sbjct: 470 HGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVD 529

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C++D+  + G+L  A        F+P  +IW S++     +G+++L    A+R+++L
Sbjct: 530 HYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLEL 589

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL   Y   GRW  + RV+K+ +   +  +   SWI I++++Y F A ++ 
Sbjct: 590 KPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMT 649

Query: 605 HHGGQKIYLVLRLL 618
           H    ++Y +L  L
Sbjct: 650 HPQATELYQLLENL 663



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 34/297 (11%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S C   +D  L        K +    +K+G  A+  + N  + LY R G +D+ ++LF+
Sbjct: 286 MSLCGARLDMSL-------GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFE 338

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           E+   + I+WN  + G             + +I +      ++   G+        AL++
Sbjct: 339 EMDSSSIITWNAMISG-------------YAQIMDSAKDDLHARSRGFQ-------ALKL 378

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  +    ++P  FTFS +LS  S+      G+QIH + I++G  LS+VV+ ++L++MY 
Sbjct: 379 FRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTG-CLSDVVVNSALVNMYN 437

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A   F+ M     ++W S+ISG    G  + A+  F  M  SG  P+E T   
Sbjct: 438 KCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVS 497

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDSVRLFEQ 306
           +++AC+    +++ ++ F + ++  +    +V      +D+F +  RL+D+    ++
Sbjct: 498 LLSACSYAGLVEEAERYFDM-MRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKR 553



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 38/229 (16%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C +  + +  + IH +  K G  +   + +  +++Y++ G+ +   +
Sbjct: 388 KPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATK 447

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+P +  ++W                                SMISGY+  G S  A
Sbjct: 448 AFVEMPTRTPVTW-------------------------------TSMISGYSQHGRSQDA 476

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLG-NSLID 188
           +++F  M L G RP+  TF  LLS  S A      + +  M+R+   +  +V     ++D
Sbjct: 477 IQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVD 536

Query: 189 MYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYS 236
           M+ +LG L  AF        E +   W+SL++GC + G  ELA   FY+
Sbjct: 537 MFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA---FYA 582


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/624 (29%), Positives = 315/624 (50%), Gaps = 41/624 (6%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+  +  C    +    + +H    + GF    ++G+  +++YSR G+            
Sbjct: 44  CNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGS------------ 91

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                              L  A +VFD +  PDVV + S+IS +   G  + A E   +
Sbjct: 92  -------------------LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQ 132

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS-GLSLSNVVLGNSLIDMYGKLGVL 196
           M  QG++P+  T + +L T      G+QIHG +I+  GL   +V    +LID Y + G  
Sbjct: 133 MLKQGLKPNEHTMTTIL-TACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEF 191

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF ++   +++SW S++      G  E AL  F  M   G  P+E+ +SIV+ AC
Sbjct: 192 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC 251

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               ++  G+Q+   ++K   +++  V +A + ++ +   +E+   +  +++  D     
Sbjct: 252 G---SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 308

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
             IS   + GFGE A+ L   M  E   P  +  S VLSS   +  ++ G QFH +A+K 
Sbjct: 309 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 368

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G DS     ++L+ MY+K G + S+   F  +   D+ SWN+++ G  Q+G A + L+VF
Sbjct: 369 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 428

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            ++   G+ PD  T   VL+ CN+ G V++G L F  M ++Y   P   HYAC+ID+L +
Sbjct: 429 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGR 488

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            G+  +A+ + + MPF+P   IW+++L +  ++ ++ + +  A+R+M+L       Y L+
Sbjct: 489 NGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLM 548

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YAM G WE   +V++ M + G+ K  GCSWI I N ++TF + ++ H     IY +L
Sbjct: 549 SNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQML 608

Query: 616 RLLTWEMEDEGCVYLECDKLDVEG 639
             L   M+D    + E +  DV G
Sbjct: 609 GELVAVMQD----FDELEPFDVRG 628



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 220/443 (49%), Gaps = 20/443 (4%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHG 163
           +P  +VV+W S++SGY   G  + AL MF+ M   GV P+ F  +  L   + + +   G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           +Q+H   +R+G +  +  +G+ LI+MY + G L  A  VF  M+  D++ + SLIS    
Sbjct: 61  EQVHSLAVRAGFA-GDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSI 282
           +G  ELA +    M   G  P+E+T++ ++ AC ++     G+Q+   L  K+G  S S+
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSV 175

Query: 283 VLS-ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
             S A ID +S+    + +  +F+ L   +      M+  Y R G  E AL++F  M+ E
Sbjct: 176 YSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISE 235

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            + P EF LS VL +     +  G Q H  AIK    ++  V+++L+ MY +TG ++   
Sbjct: 236 GVDPNEFALSIVLGA--CGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 293

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +  K++  DLVSW T +    QNG   + + +  ++  EG  P+    ++VL +C    
Sbjct: 294 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVA 353

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK---AIDITSTMPFQPGCSIW 518
            +D+GM  F  +  + G          +I++  + GQ+G    A D+  T       + W
Sbjct: 354 SLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV----TSW 408

Query: 519 ESILRASAIYGDVKLTENVAERM 541
            S++   A +GD      V  +M
Sbjct: 409 NSLIHGHAQHGDANKALEVFSKM 431


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/612 (28%), Positives = 322/612 (52%), Gaps = 37/612 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   ++ +  K +H  + ++G +   Y+G   L +Y++ G+ +D L++F+ +  +N
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                          VVSW +MI+G+A  G  + A   F+KM  
Sbjct: 372 -------------------------------VVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  TF  +L   S  S+   G+QIH  +I++G  +++  +  +L+ MY K G L 
Sbjct: 401 SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGY-ITDDRVRTALLSMYAKCGSLM 459

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + + ++++WN++I+        + A+  F ++   G  PD  T + ++N C 
Sbjct: 460 DARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCK 519

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L+ GK V +L ++ GF S+  + +A + +F  C  L  ++ LF  +   D    N 
Sbjct: 520 SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNT 579

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSG 376
           +I+ + ++G  + A + F++M    ++P + T + +L++   P  +  G + H++  ++ 
Sbjct: 580 IIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAA 639

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D + VV + L+ MY K GSID +  +F  L K+++ SW +++ G  Q+GR  E L++F 
Sbjct: 640 LDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFC 699

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++ +EG+ PD IT    L AC + G + +G+  F +MK+ + + P  EHY C++DL  +A
Sbjct: 700 QMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRA 758

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L +A++  + M  +P   +W ++L A  ++ DV+L E VA++ ++L       Y +L+
Sbjct: 759 GLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILS 818

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G W+ + +++KVM   G+ K  G SWI +  R++ F + +  H   ++I+  L 
Sbjct: 819 NIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELG 878

Query: 617 LLTWEMEDEGCV 628
            L  EM+  G V
Sbjct: 879 RLHMEMKKLGYV 890



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 204/370 (55%), Gaps = 5/370 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K   +D ALKVF+ +P  D+++W SMI+G A       A  +F  M+ +GV+P    F 
Sbjct: 251 IKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFV 310

Query: 152 ILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            LL   +   +   GK++H  M   GL  + + +G +L+ MY K G +  A  VF  ++ 
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKEVGLD-TEIYVGTALLSMYTKCGSMEDALEVFNLVKG 369

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW ++I+G    G  E A   F  M  SG  P+  T   ++ AC++   L +G+Q+
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQI 429

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G++++  V +A + +++KC  L D+  +FE++ + +    N MI+ Y ++   
Sbjct: 430 HDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKY 489

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + A+  FQ +L+E I+P   T + +L+    P  +E G    S+ I++GF+S+  + ++L
Sbjct: 490 DNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNAL 549

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + M+   G + S+  +F  + +RDLVSWNTI+ G  Q+G      D F+ + E G+ PD+
Sbjct: 550 VSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQ 609

Query: 448 ITLAAVLLAC 457
           IT   +L AC
Sbjct: 610 ITFTGLLNAC 619



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 243/488 (49%), Gaps = 8/488 (1%)

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           Q +   WN+ +    K  N ++A ++FDE+P+ DV SWN ++ GY      + A  +  +
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   GV+P  +TF  +L+  + A +   G ++   ++ +G   +++ +G +LI+M+ K G
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWD-TDLFVGTALINMHIKCG 254

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF N+   D+I+W S+I+G       + A + F  M   G  PD+     ++ 
Sbjct: 255 GVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLK 314

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC     L++GK+V A   +VG  +   V +A + +++KC  +ED++ +F  +   +   
Sbjct: 315 ACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAI 373
              MI+ + ++G  E A   F  M+   I P   T   +L +   P  ++ G Q H   I
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+G+ ++  V ++L+ MYAK GS+  +  +F ++ K+++V+WN ++    Q+ +    + 
Sbjct: 435 KAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVA 494

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            F+ LL+EG+ PD  T  ++L  C     ++ G  V S +    G          ++ + 
Sbjct: 495 TFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA-GFESDLHIRNALVSMF 553

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPY 552
              G L  A+++ + MP +   S W +I+     +G+ +   +  + M +  + P  + +
Sbjct: 554 VNCGDLMSAMNLFNDMPERDLVS-WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITF 612

Query: 553 SLLTQAYA 560
           + L  A A
Sbjct: 613 TGLLNACA 620



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 185/363 (50%), Gaps = 4/363 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G++IH  +  S +   ++ + N LI MY K G    A  +F  M + D+ SWN L+ G  
Sbjct: 123 GERIHNHIKFSKIQ-PDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYV 181

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
                E A      M   G  PD+YT   ++NAC   +N+DKG ++F+L +  G+ ++  
Sbjct: 182 QHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLF 241

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A I++  KC  ++D++++F  L R D      MI+   R+   + A  LFQ+M  E 
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 343 IRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++P +     +L +   P  +E G + H+   + G D+   V ++L+ MY K GS++ + 
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDAL 361

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F  +  R++VSW  ++ G  Q+GR  E    F +++E G+ P+R+T  ++L AC+   
Sbjct: 362 EVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPS 421

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            + +G  +   + +  G +  +     ++ +  + G L  A ++   +  Q     W ++
Sbjct: 422 ALKQGRQIHDRIIKA-GYITDDRVRTALLSMYAKCGSLMDARNVFERISKQ-NVVAWNAM 479

Query: 522 LRA 524
           + A
Sbjct: 480 ITA 482



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 35/299 (11%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K   S  + +++ C S  + +  K +   + + GF +  ++ N  + ++   G     + 
Sbjct: 505 KPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMN 564

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LF+++P+++ +SW                               N++I+G+   G + +A
Sbjct: 565 LFNDMPERDLVSW-------------------------------NTIIAGFVQHGENQFA 593

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
            + F  MQ  GV+P   TF+ LL+  +S      G+++H  +  + L   +VV+G  LI 
Sbjct: 594 FDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALD-CDVVVGTGLIS 652

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  VF N+ + ++ SW S+I+G    G G+ AL+ F  M+  G  PD  T
Sbjct: 653 MYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWIT 712

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
               ++AC     + +G   F                  +DLF +   L ++V    ++
Sbjct: 713 FVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKM 771


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/584 (31%), Positives = 306/584 (52%), Gaps = 46/584 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           SQ++  C          ++H +L KL  N    + N+ L LY +FG              
Sbjct: 63  SQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFG-------------- 108

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL-EMFSK 137
                            ++  A ++FD +P  DVVS+N+MIS      Y    L  ++SK
Sbjct: 109 -----------------HIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSK 151

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           M+ + V+P+  TF+ L+     AC G          H   +R GLS SN  +G+SL+D Y
Sbjct: 152 MKKEDVKPNHITFAGLIG----ACDGLIALRLRGIFHAHTVRCGLS-SNEFVGSSLVDGY 206

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K   L  A   F  + ELD++SWN +I GC  +   E A+  F  M       D +T++
Sbjct: 207 AKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLT 266

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDR 309
            +I  C+K  +L  G Q    ++K+G    + + +A I ++SKC + +   V++F  +  
Sbjct: 267 SIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISE 326

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQF 368
            +      MIS + +    E A+ LF+ MLR  +R  +F+ S +L     +  +E G Q 
Sbjct: 327 PNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQI 386

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  IKS F  +  V ++L++MY+K GS++ +  +F+K+ K D+VS  T++M   Q+G+ 
Sbjct: 387 HARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKG 446

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            E L++  E+  EGL PD +T    L AC++GG V++G+ VF  M E++ + P  EH+AC
Sbjct: 447 KEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFAC 506

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           ++D+L +AG+L +A +    M  +    +WE++L A  ++G++ L E  A+++M+LQ   
Sbjct: 507 VVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEKSAQKIMELQPGR 566

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
             PY LL   YA RG WE  V V++ +  +G+ K  GCSW+ ++
Sbjct: 567 HGPYVLLANIYAERGSWEDKVMVREKLVSHGLKKQVGCSWVALE 610



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 229/491 (46%), Gaps = 52/491 (10%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S +KK  V    +++ + LI  C    +       H H  + G +++ ++G+  +D Y++
Sbjct: 150 SKMKKEDVKPNHITF-AGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAK 208

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
               +D ++ F+EI + + +SWNI + G  ++++                          
Sbjct: 209 QMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNS-------------------------- 242

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSN 179
                 ++A+ MFS+M    VR  GFT + ++ T S      HG Q HGS I+ GL+   
Sbjct: 243 -----KEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHET 297

Query: 180 VVLGNSLIDMYGKL--GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            +  N+LI MY K   GV      +F ++ E +IISW ++ISG   +   E A+  F  M
Sbjct: 298 PIY-NALITMYSKCEKGV-ASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEM 355

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
              G   ++++ S ++     L NL++GKQ+ A  +K  F  +  V +A ID++SKC  L
Sbjct: 356 LRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSL 415

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSS 356
           ED+  +F ++ + D      MI +YG++G G+ ALE+   M  E + P   T L C+ + 
Sbjct: 416 EDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYAC 475

Query: 357 IPIPPVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVS 414
                VE G + F  M             + +++M  + G ++ +     ++  + D++ 
Sbjct: 476 SHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLV 535

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY---GGFVDKGM---- 467
           W T++     +G         ++++E  L P R     VLLA  Y   G + DK M    
Sbjct: 536 WETLLGACRVHGEMVLGEKSAQKIME--LQPGRHG-PYVLLANIYAERGSWEDKVMVREK 592

Query: 468 LVFSAMKEEYG 478
           LV   +K++ G
Sbjct: 593 LVSHGLKKQVG 603


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/540 (32%), Positives = 294/540 (54%), Gaps = 6/540 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           ++  ++D+A + F  I + DVV +N++I+  A  G++  A E + +M+  GV  +  T+ 
Sbjct: 275 VRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYL 334

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L+  S++     GK IH  +   G S S+V +GN+LI MY + G L  A  +F  M +
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHS-SDVQIGNALISMYARCGDLPKARELFYTMPK 393

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+ISWN++I+G         A+  +  M+  G  P   T   +++AC        GK +
Sbjct: 394 RDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMI 453

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               ++ G  SN  + +A ++++ +C  L ++  +FE     D    N MI+ + ++G  
Sbjct: 454 HEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSY 513

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E A +LFQ M  E++ P   T + VLS    P  +E G Q H    +SG   +  + ++L
Sbjct: 514 ETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNAL 573

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPD 446
           + MY + GS+  +  +F  L  RD++SW  ++ G    G   + +++F ++  EG  PPD
Sbjct: 574 INMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPD 633

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
             T  ++L ACN+ G V +G  +FS+M+ EYGV+P  EHY C++ LL +A +  +A  + 
Sbjct: 634 GSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLI 693

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
           + MPF P  ++WE++L A  I+G++ L E+ A   + L   +P  Y LL+  YA  GRW+
Sbjct: 694 NQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWD 753

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            + ++++VM   GI K  G SWI + N I+ F A +  H    +IY  L+ L+ EME+ G
Sbjct: 754 DVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAG 813



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 139/531 (26%), Positives = 251/531 (47%), Gaps = 40/531 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   +    AK IH  + + G     +L N  +++Y                    
Sbjct: 33  LLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMY-------------------- 72

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                      +K  ++  A +VF E+P  DV+SWNS+IS YA  G+   A ++F +MQ 
Sbjct: 73  -----------VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQN 121

Query: 141 QGVRPSGFTF-SILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T+ SIL +  S A   +GK+IH  +I++G      V  NSL+ MYGK G L 
Sbjct: 122 AGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ-NSLLSMYGKCGDLP 180

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   D++S+N+++       Y +  L  F  M   G SPD+ T   +++A T
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               LD+GK++  L+V+ G  S+  V +A + +  +C  ++ + + F+ +   D  V N 
Sbjct: 241 TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNA 300

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSG 376
           +I+   ++G    A E +  M  + +     T   +L++      +E G   HS   + G
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S+  + ++L+ MYA+ G +  + E+F  + KRDL+SWN I+ G  +     E + +++
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420

Query: 437 ELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           ++  EG+ P R+T   +L AC N   + D  M+    ++   G+         ++++  +
Sbjct: 421 QMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS--GIKSNGHLANALMNMYRR 478

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            G L +A ++      +   S W S++   A +G  +    + + M + +L
Sbjct: 479 CGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQEMQNEEL 528



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 244/526 (46%), Gaps = 40/526 (7%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           ++Y S ++  C S    +  K IH  + K G+     + N  L +Y + G          
Sbjct: 129 ITYIS-ILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCG---------- 177

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                +L  A +VF  I   DVVS+N+M+  YA   Y    L +
Sbjct: 178 ---------------------DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGL 216

Query: 135 FSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M  +G+ P   T+  LL   +T S    GK+IH   +  GL+ S++ +G +L+ M  
Sbjct: 217 FGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN-SDIRVGTALVTMCV 275

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G +  A   F  + + D++ +N+LI+     G+   A +Q+Y MR  G + +  T   
Sbjct: 276 RCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS 335

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++NAC+  + L+ GK + +   + G  S+  + +A I ++++C  L  +  LF  + + D
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHS 370
               N +I+ Y R      A+ L++ M  E ++P   T   +LS+         G   H 
Sbjct: 396 LISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHE 455

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             ++SG  SN  +A++LM MY + GS+  +  +F     RD++SWN+++ G  Q+G    
Sbjct: 456 DILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYET 515

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
              +F+E+  E L PD IT A+VL  C     ++ G  +   + E  G+         +I
Sbjct: 516 AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALI 574

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG-DVKLTE 535
           ++  + G L  A ++  ++  +   S W +++   A  G D+K  E
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGCADQGEDMKAIE 619



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 1/233 (0%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D  T   ++  CT+ R L + K++ A  V+ G   +  + +  I+++ KC  + D+ ++F
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VE 363
           +++ R D    N +IS Y + GF + A +LF+ M      P + T   +L++   P  +E
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
           +G + HS  IK+G+  +  V +SL+ MY K G +  + ++F  +  RD+VS+NT++    
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           Q     E L +F ++  EG+ PD++T   +L A      +D+G  +     EE
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE 258



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 36/211 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + ++ +  K IHG + + G      LGN  +++Y R G+                   
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS------------------- 582

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L  A  VF  +   DV+SW +MI G A  G    A+E+F +MQ +G R
Sbjct: 583 ------------LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFR 630

Query: 145 -PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            P G TF+ +LS  + A     G QI  SM      L  +     L+ + G+      A 
Sbjct: 631 PPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAE 690

Query: 201 GVFLNME-ELDIISWNSLISGCFNSGYGELA 230
            +   M    D   W +L+  C   G   LA
Sbjct: 691 TLINQMPFPPDAAVWETLLGACRIHGNIALA 721


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 184/625 (29%), Positives = 316/625 (50%), Gaps = 41/625 (6%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+  +  C    +    + +H    + GF    ++G+  +++YSR G+            
Sbjct: 117 CNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGS------------ 164

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                              L  A +VFD +  PDVV + S+IS +   G  + A E   +
Sbjct: 165 -------------------LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQ 205

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS-GLSLSNVVLGNSLIDMYGKLGVL 196
           M  QG++P+  T + +L T      G+QIHG +I+  GL   +V    +LID Y + G  
Sbjct: 206 MLKQGLKPNEHTMTTIL-TACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEF 264

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF ++   +++SW S++      G  E AL  F  M   G  P+E+ +SIV+ AC
Sbjct: 265 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC 324

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               ++  G+Q+   ++K   +++  V +A + ++ +   +E+   +  +++  D     
Sbjct: 325 G---SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 381

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
             IS   + GFGE A+ L   M  E   P  +  S VLSS   +  ++ G QFH +A+K 
Sbjct: 382 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 441

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G DS     ++L+ MY+K G + S+   F  +   D+ SWN+++ G  Q+G A + L+VF
Sbjct: 442 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 501

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            ++   G+ PD  T   VL+ CN+ G V++G L F  M ++Y   P   HYAC+ID+L +
Sbjct: 502 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGR 561

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            G+  +A+ + + MPF+P   IW+++L +  ++ ++ + +  A+R+M+L       Y L+
Sbjct: 562 NGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLM 621

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YAM G WE   +V++ M + G+ K  GCSWI I N ++TF + ++ H     IY +L
Sbjct: 622 SNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQML 681

Query: 616 RLLTWEMEDEGCVYLECDKLDVEGR 640
             L   M+D    + E +  D+E R
Sbjct: 682 GELVAVMQD----FDELEPFDIEVR 702



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 231/462 (50%), Gaps = 20/462 (4%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L  L+KS  L  AL +FD +P  +VV+W S++SGY   G  + AL MF+ M   GV P+ 
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPND 114

Query: 148 FTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F  +  L   + + +   G+Q+H   +R+G +  +  +G+ LI+MY + G L  A  VF 
Sbjct: 115 FACNAALVACADLGALRAGEQVHSLAVRAGFA-GDAWIGSCLIEMYSRCGSLPAAKEVFD 173

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M+  D++ + SLIS    +G  ELA +    M   G  P+E+T++ ++ AC ++     
Sbjct: 174 RMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL---- 229

Query: 265 GKQVFA-LSVKVGFLSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           G+Q+   L  K+G  S S+  S A ID +S+    + +  +F+ L   +      M+  Y
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLY 289

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
            R G  E AL++F  M+ E + P EF LS VL +     +  G Q H  AIK    ++  
Sbjct: 290 IRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA--CGSIGLGRQLHCSAIKHDLITDIR 347

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V+++L+ MY +TG ++    +  K++  DLVSW T +    QNG   + + +  ++  EG
Sbjct: 348 VSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 407

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK- 501
             P+    ++VL +C     +D+GM  F  +  + G          +I++  + GQ+G  
Sbjct: 408 FTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKCGQMGSA 466

Query: 502 --AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             A D+  T       + W S++   A +GD      V  +M
Sbjct: 467 RLAFDVMHTHDV----TSWNSLIHGHAQHGDANKALEVFSKM 504



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 155/286 (54%), Gaps = 5/286 (1%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +VVL    ++   K G L  A  +F  M   ++++W S++SG   +G  E AL  F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG +P+++  +  + AC  L  L  G+QV +L+V+ GF  ++ + S  I+++S+C  L 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +  +F+++D  D      +IS + R G  E+A E    ML++ ++P E T++ +L++  
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC- 225

Query: 359 IPPVEHGSQFHSMAIKS-GFDSNAVVASS-LMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             P   G Q H   IK  G  S +V +S+ L++ Y++ G    +  +F  L  +++VSW 
Sbjct: 226 --PRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWC 283

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           ++M    ++GR  E L VF +++ EG+ P+   L+ VL AC   G 
Sbjct: 284 SMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL 329



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           + V+    +    K+G +  + ++F ++ ++++V+W ++M G T+NGR    L +F +++
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
           E G+ P+     A L+AC   G +  G  V S +    G        +C+I++  + G L
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
             A ++   M   P    + S++ A    G+ +L      +M+   L  P  +++ T
Sbjct: 166 PAAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGL-KPNEHTMTT 220


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 336/660 (50%), Gaps = 90/660 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            ++  C    S+      HG +   GF ++ ++ N  + +YSR G+ ++   +FDEI Q 
Sbjct: 15  HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ- 73

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                    RG+                   DV+SWNS++S +     +  AL++FSKM 
Sbjct: 74  ---------RGI------------------DDVISWNSIVSAHVKSSNAWTALDLFSKMT 106

Query: 140 LQGVRPSGFTFSILLSTVS--SAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           L          S ++S V+   AC         K++HG+ IR+G  L +V +GN+LID Y
Sbjct: 107 LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL-DVFVGNALIDAY 165

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR------------ 238
            K G++  A  VF  ME  D++SWN++++G   SG  + A + F +MR            
Sbjct: 166 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWT 225

Query: 239 -----------------------YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
                                  +SG  P+  TI  V++AC  L    +G ++ A S+K 
Sbjct: 226 AVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKN 285

Query: 276 GFLS----------NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYG 323
             L+          + +V +A ID++SKC   + +  +F+ +   +  V+   VMI  + 
Sbjct: 286 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 345

Query: 324 RYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-FDS 379
           +YG    AL+LF  M+ E   + P  +T+SC+L +   +  +  G Q H+  ++   +DS
Sbjct: 346 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 405

Query: 380 NA-VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +A  VA+ L+ MY+K G +D++  +F  + ++  +SW ++M G   +GR +E LD+F+++
Sbjct: 406 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 465

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G  PD IT   VL AC++ G VD+G+  F +M  +YG+ P  EHYA  IDLL + G+
Sbjct: 466 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 525

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L KA      MP +P   +W ++L A  ++ +V+L E+   +++++   +   Y+L++  
Sbjct: 526 LDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 585

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  GRW+ + R++ +M+K+GI K  GCSW+  +    +F  G+  H    +IY +L  L
Sbjct: 586 YATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 645



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 128/248 (51%), Gaps = 12/248 (4%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M  +G   D +T+  V+ AC +L +   G     L    GF SN  + +A + ++S+C  
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 297 LEDSVRLFEQLDRW---DYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSC 352
           LE++  +F+++ +    D    N ++S + +      AL+LF ++ L    +PT    S 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN-ERSD 119

Query: 353 VLSSIPIPP-------VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           ++S + I P       V    + H  AI++G   +  V ++L++ YAK G ++++ ++F 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
            ++ +D+VSWN ++ G +Q+G      ++F+ + +E +P D +T  AV+   +  G   +
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 466 GMLVFSAM 473
            + VF  M
Sbjct: 240 ALNVFRQM 247


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 184/608 (30%), Positives = 304/608 (50%), Gaps = 36/608 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +F+    +H +  K  F     +G   LD+Y+                       
Sbjct: 281 CAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYA----------------------- 317

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K D +  A KVF+  P P   S N++I GYA       ALE+F  +Q   + 
Sbjct: 318 --------KCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLD 369

Query: 145 PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               + S  L+  S+      G Q+HG  ++ GL   N+ + N+++DMY K G L  A  
Sbjct: 370 FDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDF-NICVANTILDMYAKCGALMEACL 428

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F +ME  D +SWN++I+    + + E  L  F SM  S   PD+YT   V+ AC   + 
Sbjct: 429 IFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKA 488

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ G +V    +K G   +  V SA ID++ KC  L ++ ++ E+L+       N +IS 
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISG 548

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSN 380
           +     GE AL  F  ML+  + P  FT + VL     +  VE G Q H   +K    S+
Sbjct: 549 FSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSD 608

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             +AS++++MY+K G++  S  +F K  KRD V+W+ ++     +G   + + +FEE+  
Sbjct: 609 VYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQL 668

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           + + P+     +VL AC + GFVDKG+  F  M+  YG+ P  EHY+C++DLL ++GQ+ 
Sbjct: 669 QNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVN 728

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A+++  +MPF+    IW ++L    + G+V++ E  A  ++ L       Y LL+  YA
Sbjct: 729 EALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYA 788

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           + G W  + +++  M+   + K  GCSWI +++ ++ F  G+  H   ++IY    LL  
Sbjct: 789 IAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTHLLVD 848

Query: 621 EMEDEGCV 628
           EM+ +G V
Sbjct: 849 EMKWDGYV 856



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/514 (30%), Positives = 262/514 (50%), Gaps = 19/514 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +  +C + K+ +  K  H  +   GF    ++ N  L  Y +    +    +FD++PQ
Sbjct: 42  SHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQ 101

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ISWN  + G     N++ A  +FD +PE DVVSWNSM+S Y   G+   ++E+F+KM
Sbjct: 102 RDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKM 161

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L  ++    TF+++L     +     G Q+H   I+ G   S+VV G +L+DMY     
Sbjct: 162 RLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFD-SDVVTGTALVDMYSTCKK 220

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L +AF +F  M E + + W+++I+G   +      L  +  M   G    + T +    +
Sbjct: 221 LDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRS 280

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L   + G Q+ A ++K  F  ++IV +AT+D+++KC+R+ D+ ++F           
Sbjct: 281 CAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSH 340

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIK 374
           N +I  Y R      ALE+F+ + +  +   E +LS  L++   I     G Q H +A+K
Sbjct: 341 NALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVK 400

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G D N  VA+++++MYAK G++  +  IF  ++ +D VSWN I+    QN    ETL +
Sbjct: 401 CGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLAL 460

Query: 435 FEELLEEGLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
           F  +L   + PD  T  +V+ AC      NYG  V  G ++ S M  ++ V       + 
Sbjct: 461 FVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEV-HGRVIKSGMGLDWFVG------SA 513

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           IID+ C+ G L +A  I   +  +   S W SI+
Sbjct: 514 IIDMYCKCGMLVEAEKIHERLEERTTVS-WNSII 546



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 133/291 (45%), Gaps = 36/291 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   K+ ++   +HG + K G     ++G+  +D+Y + G   +  ++ + + ++ 
Sbjct: 479 VVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERT 538

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               NS+ISG++S    + AL  FS+M  
Sbjct: 539 TVSW-------------------------------NSIISGFSSEKQGENALSYFSRMLQ 567

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P  FT++ +L   + +++   GKQIHG +++  L  S+V + ++++DMY K G + 
Sbjct: 568 VGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLH-SDVYIASTIVDMYSKCGNMQ 626

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  +F    + D ++W+++I      G GE A+  F  M+     P+      V+ AC 
Sbjct: 627 DSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACA 686

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +  +DKG   F  +    G        S  +DL  +  ++ +++ L E +
Sbjct: 687 HMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESM 737



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 32/242 (13%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S +   C+ L+ ++ GKQ  A     GF+    V +  +  + KC  L  +  +F+++
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC------------VLS 355
            + D    N MI  Y   G  E A  LF  M   D+      LSC            + +
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 356 SIPIPPVEH--------------------GSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            + +  ++H                    G Q H +AI+ GFDS+ V  ++L++MY+   
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +D +  IF ++ +R+ V W+ ++ G  +N R  E L +++ +L+EG+   + T A+   
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 456 AC 457
           +C
Sbjct: 280 SC 281



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 41/219 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++D C +  + +  K IHG + KL  ++  Y+ +  +D+YS+ G   D   +F++ P+
Sbjct: 578 ATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPK 637

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +                               D V+W++MI  YA  G  + A+++F +M
Sbjct: 638 R-------------------------------DYVTWSAMICAYAYHGLGEDAIKLFEEM 666

Query: 139 QLQGVRPSGFTFSILLSTVSSACH----GKQIH-GSMIRSGLSLSNVVLGNS-LIDMYGK 192
           QLQ V+P+    +I +S + +  H     K +H    +RS   L   +   S ++D+ G+
Sbjct: 667 QLQNVKPN---HTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGR 723

Query: 193 LGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
            G +  A  +  +M  E D + W +L+  C   G  E+A
Sbjct: 724 SGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVA 762


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 178/550 (32%), Positives = 304/550 (55%), Gaps = 14/550 (2%)

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
           SWNI          +  A KVFDE PEP V  WN++I GY+S  +   A+EM+S+MQ  G
Sbjct: 113 SWNI--------GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASG 164

Query: 143 VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           V P GFT   +L   S       GK++HG + R G   S+V + N L+ +Y K G +  A
Sbjct: 165 VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFE-SDVFVQNGLVALYAKCGRVEQA 223

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF  +++ +I+SW S+ISG   +G    AL  F  MR     PD   +  V+ A T +
Sbjct: 224 RIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDV 283

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +L++GK +    VK+G      +L +   +++KC ++  +   F+Q++  +  + N MI
Sbjct: 284 EDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMI 343

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFD 378
           S Y + G+   A+ LFQ M+ ++IR    T+ S +L+   +  ++          K+ + 
Sbjct: 344 SGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYR 403

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           ++  V ++L++M+AK GS+D + E+F +   +D+V W+ +++G   +GR  + +D+F  +
Sbjct: 404 NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAM 463

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G+ P+ +T   +L ACN+ G V++G  +F +MK  YG+    +HYAC++DLL ++G 
Sbjct: 464 KQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY-YGIEARHQHYACVVDLLGRSGH 522

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L +A D  +TMP +PG S+W ++L A  IY  V L E  AE++  L   +   Y  L+  
Sbjct: 523 LNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNL 582

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA    W+++ +V+ +MR+ G++K  G S I I  ++  F  G+  H   ++I+  L  L
Sbjct: 583 YASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESL 642

Query: 619 TWEMEDEGCV 628
              +++ G +
Sbjct: 643 ERRLKEAGFI 652



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 185/405 (45%), Gaps = 39/405 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C      +  K +HG +F+LGF +  ++ N  + LY++ G  +    +F+ +  +N
Sbjct: 175 VLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRN 234

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                                SMISGY   G    AL +F +M+ 
Sbjct: 235 IVSW-------------------------------TSMISGYGQNGLPMEALRIFGQMRQ 263

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + V+P       +L   + V     GK IHG +++ GL     +L  SL  MY K G + 
Sbjct: 264 RNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL-ISLTAMYAKCGQVM 322

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  ME  +++ WN++ISG   +GY   A+  F  M       D  T+   I AC 
Sbjct: 323 VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           ++ +LD  K +     K  + ++  V +A ID+F+KC  ++ +  +F++    D  V + 
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSA 442

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKS 375
           MI  YG +G G+ A++LF  M +  + P + T   +L++      VE G + FHSM    
Sbjct: 443 MIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYY- 501

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
           G ++     + ++++  ++G ++ + +    +     VS W  ++
Sbjct: 502 GIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 5/229 (2%)

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
           L LD    + YSG+  D +  S++ ++  K R+L+   Q+ A  V  G + +  +++  +
Sbjct: 55  LPLDHSDYIPYSGFDFDSFFSSLLDHSVHK-RHLN---QIHAQLVVSGLVESGFLVTKFV 110

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
           +       +  + ++F++       + N +I  Y  + F   A+E++  M    + P  F
Sbjct: 111 NASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGF 170

Query: 349 TLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           TL CVL +   +P +E G + H    + GF+S+  V + L+ +YAK G ++ +  +F  L
Sbjct: 171 TLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGL 230

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           D R++VSW +++ G  QNG   E L +F ++ +  + PD I L +VL A
Sbjct: 231 DDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRA 279



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/96 (21%), Positives = 45/96 (46%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            H +Q H+  + SG   +  + +  +      G I  + ++F +  +  +  WN I+ G 
Sbjct: 85  RHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGY 144

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           + +    + ++++  +   G+ PD  TL  VL AC+
Sbjct: 145 SSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACS 180


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 186/614 (30%), Positives = 323/614 (52%), Gaps = 37/614 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C         + +HG + K G +   Y+GN  + +Y++ G                
Sbjct: 132 VIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIG---------------- 175

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           CI               ++A  VF E+P  D+VSWNSMISGY S G    +L  F +MQ 
Sbjct: 176 CI---------------ESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQA 220

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++   F+   +L   S      +GK+IH  M+RS L L +V++  SL+DMY K G + 
Sbjct: 221 SGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLEL-DVMVQTSLVDMYAKCGRMD 279

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINAC 256
           YA  +F  + +  I++WN++I G   +     +      M+  G   PD  T+  ++  C
Sbjct: 280 YAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPC 339

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +L  +  GK V   +++ GFL + ++ +A +D++ +C +L+ +  LF Q++  +    N
Sbjct: 340 AQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWN 399

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            MI++Y + G    A+ LFQ +  + ++P   T++ +L +   +  +    Q H    K 
Sbjct: 400 AMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKL 459

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             DSN  V++S++ MY K G++  + EIF ++  +D++SWNT++M    +G    ++++F
Sbjct: 460 KLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELF 519

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            E+ E+G  P+  T  ++LL+C+  G V++G   F++MK +Y + PG EHY CI+DL+ +
Sbjct: 520 SEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGR 579

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            G L  A +    MP  P   IW S+L AS   GDV+L E  AE ++ L+  +   Y LL
Sbjct: 580 TGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLL 639

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  GRWE + R+K  M+K G+ K  GCS + + ++ + F   +   +    +Y VL
Sbjct: 640 SNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVL 699

Query: 616 RLLTWEMEDEGCVY 629
            +++ ++ ++  V+
Sbjct: 700 DIISKKIGEDVYVH 713



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 235/475 (49%), Gaps = 44/475 (9%)

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           ++N +S    L   ++   +  AL +F+ + + D   WN MI G+   G    A++ + +
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 138 MQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+  GVR   FT+  ++           G+++HG +I+SGL L ++ +GNSLI MY K+G
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDL-DIYIGNSLIIMYAKIG 175

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  M   D++SWNS+ISG  + G G  +L  F  M+ SG   D +++  ++ 
Sbjct: 176 CIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILG 235

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+    L  GK++    ++     + +V ++ +D+++KC R++ + RLF+Q+       
Sbjct: 236 ACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVA 295

Query: 315 INVMISTYGRYGFGEVALELFQLMLRED----IRPTEFTLSCVLSSIPIPPVEH------ 364
            N MI   G Y     + E F  + +      + P   T+  +L     PP         
Sbjct: 296 WNAMI---GGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLL-----PPCAQLEAILL 347

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H  AI++GF  + V+ ++L++MY + G +  +  +F ++++R+L+SWN ++   T+
Sbjct: 348 GKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTK 407

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLAC----------NYGGFVDKGMLVFSAMK 474
           NG   + + +F++L  + L PD  T+A++L A              G+V K  L  +   
Sbjct: 408 NGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFV 467

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                         I+ +  + G L +A +I   M F+   S W +++ A AI+G
Sbjct: 468 SN-----------SIVFMYGKCGNLLRAREIFDRMTFKDVIS-WNTVIMAYAIHG 510


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 191/605 (31%), Positives = 322/605 (53%), Gaps = 55/605 (9%)

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           QLF+++P ++ +SWN+ + G ++  NL  A  +FD++PE DVVSWN+M+SGYA  GY   
Sbjct: 101 QLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE 160

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A E+F +M  +    +  +++ +L+      +G+      +    +   ++  N ++  Y
Sbjct: 161 AKEIFDEMPCK----NSISWNGMLAAYVQ--NGRIEDARRLFESKADWELISWNCMMGGY 214

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP--DEYT 248
            K   L  A G+F  M E D +SWN++ISG   +G      +   + R    SP  D +T
Sbjct: 215 VKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG------ELLEAQRLFEESPVRDVFT 268

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            + +++   +   LD+ ++VF    +     NS+  +A I  + +C R++ +  LFE + 
Sbjct: 269 WTAMVSGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 309 RWDYAVINVMISTYGRYG-------------------------------FGEVALELFQL 337
             + +  N MI+ Y + G                               +GE AL LF  
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 338 MLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M R+  R    T +  LS+   I  +E G Q H   +K+G +S   V ++L+ MY K G+
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ID +  +F  ++++++VSWNT++ G  ++G   E L +FE + + G+ PD +T+  VL A
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G VDKG   F +M ++YG+    +HY C+IDLL +AG+L  A ++   MPF+P  +
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
            W ++L AS I+G+ +L E  A+ + +++  +   Y LL+  YA  GRW  + R++  MR
Sbjct: 565 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMR 624

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL- 635
             G+ KV G SW+ ++N+I+TF  G+  H    +IY  L  L  +M+ EG  Y+   KL 
Sbjct: 625 DRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEG--YVSSTKLV 682

Query: 636 --DVE 638
             DVE
Sbjct: 683 LHDVE 687



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 203/439 (46%), Gaps = 54/439 (12%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +  Y++ G   +  +LF+E P ++  +W   + G +++  LD A +VFD +PE + V
Sbjct: 239 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 298

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS 173
           SWN++I+GY  C   D A E+F  M  Q                                
Sbjct: 299 SWNAIIAGYVQCKRMDQARELFEAMPCQ-------------------------------- 326

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
                NV   N++I  Y + G +  A   F  M + D ISW ++I+G   SGYGE AL  
Sbjct: 327 -----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 381

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M+  G   +  T +  ++ C ++  L+ GKQV    VK G  S   V +A + ++ K
Sbjct: 382 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 441

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  ++D+  +FE ++  +    N MI+ Y R+GFG+ AL LF+ M +  I P + T+  V
Sbjct: 442 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 501

Query: 354 LSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KR 410
           LS+      V+ G++ F+SM    G  +N+   + ++++  + G +D +  +   +  + 
Sbjct: 502 LSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP 561

Query: 411 DLVSWNTIM-----MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL--LACNYGGFV 463
           D  +W  ++      G T+ G  A  + +FE      + PD   +  +L  L    G + 
Sbjct: 562 DAATWGALLGASRIHGNTELGEKAAKM-IFE------MEPDNSGMYVLLSNLYAASGRWG 614

Query: 464 DKGMLVFSAMKEEYGVMPG 482
           D G +           +PG
Sbjct: 615 DVGRMRLRMRDRGVKKVPG 633



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/478 (22%), Positives = 217/478 (45%), Gaps = 38/478 (7%)

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG 168
           + D+V WN  I+ +   G  D AL +F+ M     R S  +++ ++S   S  + K    
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMP----RRSSISWNAMISGCLS--NDKFYLA 99

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
             +   +   ++V  N +I    +   L  A  +F  M E D++SWN+++SG   +GY +
Sbjct: 100 RQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVK 159

Query: 229 LALDQFYSMRYSGYSPDEYTISI--VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            A + F  M      P + +IS   ++ A  +   ++  +++F        +S + ++  
Sbjct: 160 EAKEIFDEM------PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGG 213

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
               + K NRL D+  +F+++   D    N MIS Y + G    A  LF+     D+   
Sbjct: 214 ----YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV--- 266

Query: 347 EFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFV 405
            FT + ++S      V++G    +  +  G  + N+V  ++++  Y +   +D + E+F 
Sbjct: 267 -FTWTAMVSGY----VQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFE 321

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
            +  +++ SWNT++ G  QNG  A+  + F+ + +     D I+ AA++      G+ ++
Sbjct: 322 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAGYAQSGYGEE 377

Query: 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQ--AGQLGKAID-ITSTMPFQPGCSIWESIL 522
            + +F  MK + G       +   +    +  A +LGK +         + GC +  ++L
Sbjct: 378 ALHLFVEMKRD-GERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALL 436

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
                 G++     V E + + ++ S   ++ +   YA  G  +  + + + M+K GI
Sbjct: 437 VMYCKCGNIDDAYIVFEGIEEKEVVS---WNTMIAGYARHGFGKEALMLFESMKKTGI 491



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 38/220 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K +HG + K G  +  Y+GN  L +Y + G  DD   +F+ I +K  +SW
Sbjct: 404 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 463

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          N+MI+GYA  G+   AL +F  M+  G+ 
Sbjct: 464 -------------------------------NTMIAGYARHGFGKEALMLFESMKKTGIL 492

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +LS  S       G +   SM +     +N      +ID+ G+ G L  A  
Sbjct: 493 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 552

Query: 202 VFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
           +  NM  E D  +W +L+       N+  GE A    + M
Sbjct: 553 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 592


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/595 (29%), Positives = 324/595 (54%), Gaps = 37/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH H+ KLG+  +  + N  +D Y                                K+  
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAY-------------------------------CKTHC 190

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A ++F  +   D V++NS+++GY++ G ++ A+E+F ++   G++PS FTF+ LLS 
Sbjct: 191 LYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +     G+Q+HG ++++   + NV +GN+L+D Y K   +     +F  M ELD IS
Sbjct: 251 AVGLDDTKFGQQVHGFVLKTNF-VWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGIS 309

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N +I+    +G  + + D F  ++++ +   ++  + +++  T   NL  G+Q+   ++
Sbjct: 310 YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI 369

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
            VG    S V +A +D+++KCN  +++ ++F+ +          MIS Y + G  E  + 
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGIN 429

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M R  +   + T + +L +   +  +  G Q HS+ I+SGF SN    S+L++ YA
Sbjct: 430 VFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYA 489

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +  + + F ++ +R+ VSWN ++    QNG    TL+ F+++++ G  PD ++  +
Sbjct: 490 KCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLS 549

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ GFV++ +  F++M + Y V P  EHY  ++D+LC+ G+  +A  + + MPF+
Sbjct: 550 VLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFE 609

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMRGRWEAIVRV 571
           P   +W S+L +  I+ + +L +  A+R+ +++ L    PY  ++  YA+ G+W+ + +V
Sbjct: 610 PSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKV 669

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           KK MR  G+ KV   SW+ IK++ + F+A +  H   +KI   +  L+ EME +G
Sbjct: 670 KKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKG 724



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 256/513 (49%), Gaps = 13/513 (2%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           I  H+ K GFN +T   N  ++ +   G      Q+FD++P KN IS N+ + G LK   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS- 155
           L  A ++FD + E   VSW  +I GY     S  A  +++ M+  G+ P   T   LLS 
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 156 --TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              + +     QIH  +I+ G    N+++ NSL+D Y K   LY A  +F +M   D ++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEY-NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +NSL++G  N G  E A++ F  +  SG  P ++T + +++A   L +   G+QV    +
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F+ N  V +A +D +SK +++++  +LF ++   D    NV+I++Y   G  + + +
Sbjct: 269 KTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFD 328

Query: 334 LFQLM--LREDIRPTEFT--LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           LF+ +   R D R   F   LS   SS+ +     G Q H  AI  G +  + V ++L++
Sbjct: 329 LFRKLQFTRFDRRQFPFATLLSIATSSLNL---RMGRQIHCQAITVGANFESRVENALVD 385

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK      + +IF  +  +  V W  ++    Q G+  E ++VF ++   G+P D+ T
Sbjct: 386 MYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQAT 445

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
            A++L AC     +  G  + S +    G M      + ++D   + G +  AI     M
Sbjct: 446 FASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           P +   S W +++ A A  G+V  T N  ++M+
Sbjct: 505 PERNSVS-WNALISAYAQNGNVDGTLNSFQQMI 536



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 196/443 (44%), Gaps = 69/443 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+   +      F + +HG + K  F  + ++GN  LD YS+    D+V +LF E+P 
Sbjct: 245 AALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMP- 303

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                         E D +S+N +I+ YA  G    + ++F K+
Sbjct: 304 ------------------------------ELDGISYNVVITSYAWNGQFKESFDLFRKL 333

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q        F F+ LLS  +S+ +   G+QIH   I  G +  + V  N+L+DMY K   
Sbjct: 334 QFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV-ENALVDMYAKCNG 392

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  +F N+     + W ++IS     G  E  ++ F  MR +G   D+ T + ++ A
Sbjct: 393 DKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRA 452

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L ++  G+Q+ +L ++ GF+SN    SA +D ++KC  + D+++ F ++   +    
Sbjct: 453 CANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSW 512

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
           N +IS Y + G  +  L  FQ M++   +P   +   VLS+                   
Sbjct: 513 NALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACS---------------HC 557

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF   A+               +S T+I+    KR+   + +++  L +NGR     D  
Sbjct: 558 GFVEEAL------------WHFNSMTQIYEVTPKRE--HYTSMVDVLCRNGR----FDEA 599

Query: 436 EELLEE-GLPPDRITLAAVLLAC 457
           E+L+ E    P  I  ++VL +C
Sbjct: 600 EKLMTEMPFEPSEIMWSSVLNSC 622


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 170/534 (31%), Positives = 293/534 (54%), Gaps = 5/534 (0%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           ++ A K+FD +PE D+V WN++ISGYA  G+   ALE+  +MQ +G RP   T   +L  
Sbjct: 226 VEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA 285

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           V+       G+ IHG  +R+G   S V +  +L+DMY K G +  A  +F  M    ++S
Sbjct: 286 VADVGSLRIGRSIHGYSMRAGFE-SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVS 344

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I G   +G    A++ F  M          T+   ++AC  L ++++G+ V  L  
Sbjct: 345 WNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLD 404

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           ++   S+  V+++ I ++SKC R++ +  +FE L        N MI  Y + G    A++
Sbjct: 405 QLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAID 464

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F  M  ++I+P  FT+  V+ ++  +  +      H + I++  D N  VA++L++MYA
Sbjct: 465 YFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYA 524

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G++ ++ ++F  +D+R + +WN ++ G   +G     L++FE++ +E + P+ +T   
Sbjct: 525 KCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLC 584

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G V++G   F +MK++YG+ P  +HY  ++DLL +A +L +A D    MP +
Sbjct: 585 VLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIE 644

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P  S++ ++L A  I+ +V+L E  A R+ DL       + LL   YA    W+ + RV+
Sbjct: 645 PAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVR 704

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             M K GI K  G S + ++N ++TF +G   H   +KIY  L  L   ++  G
Sbjct: 705 TTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAG 758



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 5/368 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +L  A +VF  I +     +++M+ GYA     D A+  F +M+  GVRP  + F+ 
Sbjct: 121 KFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTY 180

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL           GK+IH  +I +G + SNV     +++MY K  ++  A+ +F  M E 
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFA-SNVFAMTGVVNMYAKCRLVEEAYKMFDRMPER 239

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ WN++ISG   +G+G+ AL+    M+  G  PD  TI  ++ A   + +L  G+ + 
Sbjct: 240 DLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIH 299

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             S++ GF S   V +A +D++SKC  +  +  +F+++        N MI  Y + G   
Sbjct: 300 GYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPG 359

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+E+FQ M+ E +  T  T+   L +   +  VE G   H +  +    S+  V +SL+
Sbjct: 360 AAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLI 419

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MY+K   +D + EIF  L  + LVSWN +++G  QNGR  E +D F ++  + + PD  
Sbjct: 420 SMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSF 479

Query: 449 TLAAVLLA 456
           T+ +V+ A
Sbjct: 480 TMVSVIPA 487



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 176/326 (53%), Gaps = 2/326 (0%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           +ILL   +S     Q    +I++GL  S  +    L+ ++ K G L+ A  VF  +E+  
Sbjct: 81  AILLELCTSMKELHQFIPLIIKNGL-YSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKI 139

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
              +++++ G   +   + A+  F  MRY G  P  Y  + ++  C    +L KGK++  
Sbjct: 140 DELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHC 199

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             +  GF SN   ++  +++++KC  +E++ ++F+++   D    N +IS Y + GFG+ 
Sbjct: 200 QLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKT 259

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ALEL   M  E  RP   T+  +L ++  +  +  G   H  ++++GF+S   V+++L++
Sbjct: 260 ALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVD 319

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K GS+ ++  IF ++  + +VSWN+++ G  QNG     +++F+++++E +    +T
Sbjct: 320 MYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVT 379

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKE 475
           +   L AC   G V++G  V   + +
Sbjct: 380 VMGALHACADLGDVEQGRFVHKLLDQ 405



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 157/371 (42%), Gaps = 87/371 (23%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    ++IHG+  + GF +   +    +D+YS+ G+      +FD +  K  +SWN  + 
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350

Query: 90  GLLKSDNLDTALKVFDEIPE---------------------------------------P 110
           G +++ +   A+++F ++ +                                        
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGS 410

Query: 111 DVVSWNSMISGYASCGYSDYALEMFS-------------------------------KMQ 139
           DV   NS+IS Y+ C   D A E+F                                KMQ
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ 470

Query: 140 LQGVRPSGFTF-SIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           LQ ++P  FT  S++  L+ +S     K IHG +IR+ L   NV +  +L+DMY K G +
Sbjct: 471 LQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLD-KNVFVATALVDMYAKCGAV 529

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
           + A  +F  M+E  + +WN++I G    G G+ AL+ F  M+     P+E T   V++AC
Sbjct: 530 HTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSAC 589

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY--- 312
           +    +++G Q F ++    G         A +DL  + NRL ++         WD+   
Sbjct: 590 SHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEA---------WDFIQK 640

Query: 313 AVINVMISTYG 323
             I   IS +G
Sbjct: 641 MPIEPAISVFG 651



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 40/212 (18%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           AK IHG + +   + + ++    +D+Y++ G                             
Sbjct: 497 AKWIHGLVIRTCLDKNVFVATALVDMYAKCGA---------------------------- 528

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              + TA K+FD + E  V +WN+MI GY + G    ALE+F KM+ + ++P+  TF  +
Sbjct: 529 ---VHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCV 585

Query: 154 LSTVSSAC---HGKQIHGSMIRS-GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LS  S +     G Q  GSM +  GL  +    G +++D+ G+   L  A+     M  E
Sbjct: 586 LSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYG-AMVDLLGRANRLNEAWDFIQKMPIE 644

Query: 209 LDIISWNSLISGCF---NSGYGELALDQFYSM 237
             I  + +++  C    N   GE A ++ + +
Sbjct: 645 PAISVFGAMLGACRIHKNVELGEKAANRIFDL 676


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/595 (29%), Positives = 324/595 (54%), Gaps = 37/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH H+ KLG+  +  + N  +D Y                                K+  
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAY-------------------------------CKTHC 190

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A ++F  +   D V++NS+++GY++ G ++ A+E+F ++   G++PS FTF+ LLS 
Sbjct: 191 LYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +     G+Q+HG ++++   + NV +GN+L+D Y K   +     +F  M ELD IS
Sbjct: 251 AVGLDDTKFGQQVHGFVLKTNF-VWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGIS 309

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N +I+    +G  + + D F  ++++ +   ++  + +++  T   NL  G+Q+   ++
Sbjct: 310 YNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAI 369

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
            VG    S V +A +D+++KCN  +++ ++F+ +          MIS Y + G  E  + 
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGIN 429

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M R  +   + T + +L +   +  +  G Q HS+ I+SGF SN    S+L++ YA
Sbjct: 430 VFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYA 489

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +  + + F ++ +R+ VSWN ++    QNG    TL+ F+++++ G  PD ++  +
Sbjct: 490 KCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLS 549

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ GFV++ +  F++M + Y V P  EHY  ++D+LC+ G+  +A  + + MPF+
Sbjct: 550 VLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFE 609

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMRGRWEAIVRV 571
           P   +W S+L +  I+ + +L +  A+R+ +++ L    PY  ++  YA+ G+W+ + +V
Sbjct: 610 PSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKV 669

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           KK MR  G+ KV   SW+ IK++ + F+A +  H   +KI   +  L+ EME +G
Sbjct: 670 KKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKG 724



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 256/513 (49%), Gaps = 13/513 (2%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           I  H+ K GFN +T   N  ++ +   G      Q+FD++P KN IS N+ + G LK   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS- 155
           L  A ++FD + E   VSW  +I GY     S  A  +++ M+  G+ P   T   LLS 
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 156 --TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              + +     QIH  +I+ G    N+++ NSL+D Y K   LY A  +F +M   D ++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEY-NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +NSL++G  N G  E A++ F  +  SG  P ++T + +++A   L +   G+QV    +
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F+ N  V +A +D +SK +++++  +LF ++   D    NV+I++Y   G  + + +
Sbjct: 269 KTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFD 328

Query: 334 LFQLM--LREDIRPTEFT--LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           LF+ +   R D R   F   LS   SS+ +     G Q H  AI  G +  + V ++L++
Sbjct: 329 LFRKLQFTRFDRRQFPFATLLSIATSSLNL---RMGRQIHCQAITVGANFESRVENALVD 385

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK      + +IF  +  +  V W  ++    Q G+  E ++VF ++   G+P D+ T
Sbjct: 386 MYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQAT 445

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
            A++L AC     +  G  + S +    G M      + ++D   + G +  AI     M
Sbjct: 446 FASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           P +   S W +++ A A  G+V  T N  ++M+
Sbjct: 505 PERNSVS-WNALISAYAQNGNVDGTLNSFQQMI 536



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 196/443 (44%), Gaps = 69/443 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+   +      F + +HG + K  F  + ++GN  LD YS+    D+V +LF E+P 
Sbjct: 245 AALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMP- 303

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                         E D +S+N +I+ YA  G    + ++F K+
Sbjct: 304 ------------------------------ELDGISYNVVITSYAWNGQFKESFDLFRKL 333

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q        F F+ LLS  +S+ +   G+QIH   I  G +  + V  N+L+DMY K   
Sbjct: 334 QFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV-ENALVDMYAKCNG 392

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  +F N+     + W ++IS     G  E  ++ F  MR +G   D+ T + ++ A
Sbjct: 393 DKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRA 452

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L ++  G+Q+ +L ++ GF+SN    SA +D ++KC  + D+++ F ++   +    
Sbjct: 453 CANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSW 512

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
           N +IS Y + G  +  L  FQ M++   +P   +   VLS+                   
Sbjct: 513 NALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACS---------------HC 557

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF   A+               +S T+I+    KR+   + +++  L +NGR     D  
Sbjct: 558 GFVEEAL------------WHFNSMTQIYEVTPKRE--HYTSMVDVLCRNGR----FDEA 599

Query: 436 EELLEE-GLPPDRITLAAVLLAC 457
           E+L+ E    P  I  ++VL +C
Sbjct: 600 EKLMTEMPFEPSEIMWSSVLNSC 622


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 198/670 (29%), Positives = 340/670 (50%), Gaps = 90/670 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            ++  C    S+      HG +   GF ++ ++ N  + +YSR G+ ++   +FDEI Q 
Sbjct: 122 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ- 180

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                    RG+                   DV+SWNS++S +     +  AL++FSKM 
Sbjct: 181 ---------RGI------------------DDVISWNSIVSAHVKSSNAWTALDLFSKMT 213

Query: 140 LQGVRPSGFTFSILLSTVS--SAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           L          S ++S V+   AC         K++HG+ IR+G  L +V +GN+LID Y
Sbjct: 214 LIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL-DVFVGNALIDAY 272

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR------------ 238
            K G++  A  VF  ME  D++SWN++++G   SG  + A + F +MR            
Sbjct: 273 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWT 332

Query: 239 -----------------------YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
                                  +SG  P+  TI  V++AC  L    +G ++ A S+K 
Sbjct: 333 AVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKN 392

Query: 276 GFLS----------NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYG 323
             L+          + +V +A ID++SKC   + +  +F+ +   +  V+   VMI  + 
Sbjct: 393 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 452

Query: 324 RYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-FDS 379
           +YG    AL+LF  M+ E   + P  +T+SC+L +   +  +  G Q H+  ++   +DS
Sbjct: 453 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 512

Query: 380 NA-VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +A  VA+ L+ MY+K G +D++  +F  + ++  +SW ++M G   +GR +E LD+F+++
Sbjct: 513 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 572

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G  PD IT   VL AC++ G VD+G+  F +M  +YG+ P  EHYA  IDLL + G+
Sbjct: 573 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 632

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L KA      MP +P   +W ++L A  ++ +V+L E+   +++++   +   Y+L++  
Sbjct: 633 LDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 692

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  GRW+ + R++ +M+K+GI K  GCSW+  +    +F  G+  H    +IY +L  L
Sbjct: 693 YATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 752

Query: 619 TWEMEDEGCV 628
              ++  G V
Sbjct: 753 IDRIKAMGYV 762



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 148/303 (48%), Gaps = 12/303 (3%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           LG  ++  Y   G   YA  V   +     + WN LI      G  + A++    M  +G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D +T+  V+ AC +L +   G     L    GF SN  + +A + ++S+C  LE++ 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 302 RLFEQLDRW---DYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSI 357
            +F+++ +    D    N ++S + +      AL+LF ++ L    +PT    S ++S +
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN-ERSDIISIV 231

Query: 358 PIPP-------VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            I P       V    + H  AI++G   +  V ++L++ YAK G ++++ ++F  ++ +
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D+VSWN ++ G +Q+G      ++F+ + +E +P D +T  AV+   +  G   + + VF
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 471 SAM 473
             M
Sbjct: 352 RQM 354



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 141/308 (45%), Gaps = 33/308 (10%)

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F+S   + +  +  +  C   + ++ + E++        N++I  + + G  + A+ +  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 337 LMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            MLR   R   FTL  VL +   +P    GS FH +   +GF+SN  + ++L+ MY++ G
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 396 SIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLDVFEEL---LEEGLPPDR-- 447
           S++ ++ IF ++ +R   D++SWN+I+    ++  A   LD+F ++   + E    +R  
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 226

Query: 448 -ITLAAVLLACNYGGFVDKGMLVFSAMKEEYG----------VMPGEEHYACIIDLLCQA 496
            I++  +L AC         +      KE +G          V  G      +ID   + 
Sbjct: 227 IISIVNILPACG-------SLKAVPQTKEVHGNAIRNGTFLDVFVGNA----LIDAYAKC 275

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP-SPLPYSLL 555
           G +  A+ + + M F+   S W +++   +  G+ K    + + M    +P   + ++ +
Sbjct: 276 GLMENAVKVFNMMEFKDVVS-WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAV 334

Query: 556 TQAYAMRG 563
              Y+ RG
Sbjct: 335 IAGYSQRG 342


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 183/601 (30%), Positives = 307/601 (51%), Gaps = 7/601 (1%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A  +H  L K G  AH Y  N  L  Y       D  +L   +PQ + +S+N  L G  K
Sbjct: 34  APVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFK 93

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              +  A+K+FD   + D  SWN ++SG          L  F KM+   VRP  FT++I+
Sbjct: 94  FGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAII 153

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +        G+Q+H  +++    L +  +G +L+ MY ++G +  A  VF  M    +++
Sbjct: 154 IPCCDLG-FGQQVHADIVKVCSDL-DAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVT 211

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN++IS     G G+ ++  F  +   G S DEYT +IV+N       + +  QV +L +
Sbjct: 212 WNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLII 271

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + GF S+    +A ++L+SKC  +  + RLFE++   D     V+I  + + G  E A+ 
Sbjct: 272 ERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMW 331

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMY 391
           LF  M   DI P  FT   +L +       + G  FH + +K G   ++ VV S++++MY
Sbjct: 332 LFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMY 391

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL---EEGLPPDRI 448
           +K G +  +   F ++ +RD+ SWN I+ G  QNG   + L ++ E++     G+ P+ +
Sbjct: 392 SKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEV 451

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G + +G   F  M +++ + P  EHY C++DLL +AG L +A  +   
Sbjct: 452 TFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILA 511

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           +P +P   +W ++L A  ++GDV++T   AE +   +  +   Y LL  +Y   G W   
Sbjct: 512 LPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEA 571

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           V +++VM   G+ K  GCSW+ I   +++F AG+  H   +    VL  L  +M +  C 
Sbjct: 572 VEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLHPQIEVASQVLPRLYLQMRERSCT 631

Query: 629 Y 629
           +
Sbjct: 632 H 632



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 186/416 (44%), Gaps = 42/416 (10%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           F + +H  + K+  +   ++G   L +Y+  G   D  ++FD +P +  ++         
Sbjct: 161 FGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVT--------- 211

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                                 WN+MIS Y+  G  D ++ +F ++  +G+    +T++I
Sbjct: 212 ----------------------WNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAI 249

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L+  ++        Q+H  +I  G   S+    N+L+++Y K G +  A  +F  + + 
Sbjct: 250 VLNEFAARWQVFEAMQVHSLIIERGFC-SDRFTNNALVNLYSKCGYVASASRLFEEIPDQ 308

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SW  +I G   SG+ E A+  FY M+     P+ +T   ++ AC       KG+   
Sbjct: 309 DVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFH 368

Query: 270 ALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            L +K G L   +V+ SA +D++SKC  + D++R F+++   D A  N +I  Y + G G
Sbjct: 369 GLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAG 428

Query: 329 EVALELFQLML---REDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVV 383
             AL+L+  M+      I P E T   VL +     +  E  S F  M  K      A  
Sbjct: 429 MKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEH 488

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            + ++++  + G +  +  + + L  K D V W  ++     +G    T    E L
Sbjct: 489 YTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHL 544



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 34/225 (15%)

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           ++ K   + A  VK G +++    +  +  +     L D+ +L   + +      N ++S
Sbjct: 30  HMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILS 89

Query: 321 TYGRYGFGEVALELFQLMLRED-------------------------------IRPTEFT 349
            Y ++G    A++LF    + D                               +RP  FT
Sbjct: 90  GYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFT 149

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            + +   IP   +  G Q H+  +K   D +A + ++L+ MYA+ G I  + ++F  +  
Sbjct: 150 YAII---IPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPS 206

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           R LV+WN ++   ++ GR  +++ +F +L  EG+  D  T A VL
Sbjct: 207 RGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVL 251


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 310/559 (55%), Gaps = 9/559 (1%)

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P+K+ I     +    +   ++ A  +FDE+P+ DVV+W +MI+GYAS  Y+  A E F 
Sbjct: 41  PKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFH 100

Query: 137 KMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M  QG  P+ FT S +L +  +     +G  +HG +++ G+  S + + N++++MY   
Sbjct: 101 EMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGS-LYVDNAMMNMYATC 159

Query: 194 GV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            V +  A  +F +++  + ++W +LI+G  + G G   L  +  M         Y I+I 
Sbjct: 160 SVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIA 219

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   + ++  GKQ+ A  +K GF SN  V+++ +DL+ +C  L ++   F +++  D 
Sbjct: 220 VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDL 279

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N +IS   R    E AL +FQ    +   P  +T + ++++   I  +  G Q H  
Sbjct: 280 ITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGR 338

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAE 430
             + GF+ N  +A++L++MYAK G+I  S  +F ++ D+R+LVSW ++M+G   +G  AE
Sbjct: 339 IFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAE 398

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            +++F++++  G+ PDRI   AVL AC + G V+KG+  F+ M+ EYG+ P  + Y C++
Sbjct: 399 AVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVV 458

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER-MMDLQLPSP 549
           DLL +AG++G+A ++   MPF+P  S W +IL A   +    L   +A R +M+L+    
Sbjct: 459 DLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMV 518

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y +L+  YA  G+W    RV+K+MR  G  K  G SWI ++N++++F   +       
Sbjct: 519 GTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNAS 578

Query: 610 KIYLVLRLLTWEMEDEGCV 628
            +Y VL LL  E  + G V
Sbjct: 579 SVYSVLGLLIEETREAGYV 597



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 199/408 (48%), Gaps = 39/408 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C + K   +   +HG + KLG     Y+ N  +++Y+                 
Sbjct: 115 SSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYA----------------- 157

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
             C            S  ++ A  +F +I   + V+W ++I+G+   G     L+M+ +M
Sbjct: 158 -TC------------SVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQM 204

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L+    + +  +I +   +++ S   GKQIH S+I+ G   SN+ + NS++D+Y + G 
Sbjct: 205 LLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQ-SNLPVMNSILDLYCRCGY 263

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  ME+ D+I+WN+LIS    S   E AL  F      G+ P+ YT + ++ A
Sbjct: 264 LSEAKHYFHEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAA 322

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF-EQLDRWDYAV 314
           C  +  L+ G+Q+     + GF  N  + +A ID+++KC  + DS R+F E +DR +   
Sbjct: 323 CANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVS 382

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMA 372
              M+  YG +G+G  A+ELF  M+   IRP       VLS+      VE G + F+ M 
Sbjct: 383 WTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVME 442

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
            + G + +  + + ++++  + G I  + E+  ++  K D  +W  I+
Sbjct: 443 SEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 138/303 (45%), Gaps = 39/303 (12%)

Query: 11  NKASLSYCSQLIDRC-LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           N     YC  +  R   S  S    K IH  + K GF ++  + N  LDLY R G   + 
Sbjct: 208 NAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEA 267

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F E+  K+ I+WN  +  L +SD                                S 
Sbjct: 268 KHYFHEMEDKDLITWNTLISELERSD--------------------------------SS 295

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
            AL MF + + QG  P+ +TF+ L++  ++      G+Q+HG + R G +  NV L N+L
Sbjct: 296 EALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFN-KNVELANAL 354

Query: 187 IDMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           IDMY K G +  +  VF  + +  +++SW S++ G  + GYG  A++ F  M  SG  PD
Sbjct: 355 IDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPD 414

Query: 246 EYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
                 V++AC     ++KG + F  +  + G   +  + +  +DL  +  ++ ++  L 
Sbjct: 415 RIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELV 474

Query: 305 EQL 307
           E++
Sbjct: 475 ERM 477


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 309/609 (50%), Gaps = 37/609 (6%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+  +  C    +    + +H    + GF    ++G+  +++YSR G+            
Sbjct: 117 CNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGS------------ 164

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                              L  A +VFD +  PDVV + S+IS +   G  + A E   +
Sbjct: 165 -------------------LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQ 205

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS-GLSLSNVVLGNSLIDMYGKLGVL 196
           M  QG++P+  T + +L T      G+QIHG +I+  GL   +V    +LID Y + G  
Sbjct: 206 MLKQGLKPNEHTMTTIL-TACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEF 264

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF ++   +++SW S++      G  E AL  F  M   G  P+E+ +SIV+ AC
Sbjct: 265 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC 324

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               ++  G+Q+   ++K   +++  V +A + ++ +   +E+   +  +++  D     
Sbjct: 325 G---SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 381

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
             IS   + GFGE A+ L   M  E   P  +  S VLSS   +  ++ G QFH +A+K 
Sbjct: 382 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 441

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G DS     ++L+ MY+K G + S+   F  +   D+ SWN+++ G  Q+G A + L+VF
Sbjct: 442 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 501

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            ++   G+ PD  T   VL+ CN+ G V++G L F  M ++Y   P   HYAC+ID+L +
Sbjct: 502 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGR 561

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
            G+  +A+ + + MPF+P   IW+++L +  ++ ++ + +  A+R+M+L       Y L+
Sbjct: 562 NGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLM 621

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YAM G WE   +V++ M + G+ K  GCSWI I N ++TF + ++ H     IY +L
Sbjct: 622 SNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQML 681

Query: 616 RLLTWEMED 624
             L   M+D
Sbjct: 682 GELVAVMQD 690



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/462 (29%), Positives = 231/462 (50%), Gaps = 20/462 (4%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L  L+KS  L  AL +FD +P  +VV+W S++SGY   G  + AL MF+ M   GV P+ 
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPND 114

Query: 148 FTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F  +  L   + + +   G+Q+H   +R+G +  +  +G+ LI+MY + G L  A  VF 
Sbjct: 115 FACNAALVACADLGALRAGEQVHSLAVRAGFA-GDAWIGSCLIEMYSRCGSLPAAKEVFD 173

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M+  D++ + SLIS    +G  ELA +    M   G  P+E+T++ ++ AC ++     
Sbjct: 174 RMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----L 229

Query: 265 GKQVFA-LSVKVGFLSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           G+Q+   L  K+G  S S+  S A ID +S+    + +  +F+ L   +      M+  Y
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLY 289

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
            R G  E AL++F  M+ E + P EF LS VL +     +  G Q H  AIK    ++  
Sbjct: 290 IRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA--CGSIGLGRQLHCSAIKHDLITDIR 347

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V+++L+ MY +TG ++    +  K++  DLVSW T +    QNG   + + +  ++  EG
Sbjct: 348 VSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEG 407

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK- 501
             P+    ++VL +C     +D+GM  F  +  + G          +I++  + GQ+G  
Sbjct: 408 FTPNGYAFSSVLSSCADVASLDQGM-QFHCLALKLGCDSEICTGNALINMYSKCGQMGSA 466

Query: 502 --AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             A D+  T       + W S++   A +GD      V  +M
Sbjct: 467 RLAFDVMHTHDV----TSWNSLIHGHAQHGDANKALEVFSKM 504



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 155/286 (54%), Gaps = 5/286 (1%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +VVL    ++   K G L  A  +F  M   ++++W S++SG   +G  E AL  F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG +P+++  +  + AC  L  L  G+QV +L+V+ GF  ++ + S  I+++S+C  L 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +  +F+++D  D      +IS + R G  E+A E    ML++ ++P E T++ +L++  
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC- 225

Query: 359 IPPVEHGSQFHSMAIKS-GFDSNAVVASS-LMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             P   G Q H   IK  G  S +V +S+ L++ Y++ G    +  +F  L  +++VSW 
Sbjct: 226 --PRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWC 283

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           ++M    ++GR  E L VF +++ EG+ P+   L+ VL AC   G 
Sbjct: 284 SMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL 329



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           + V+    +    K+G +  + ++F ++ ++++V+W ++M G T+NGR    L +F +++
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
           E G+ P+     A L+AC   G +  G  V S +    G        +C+I++  + G L
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSL 165

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
             A ++   M   P    + S++ A    G+ +L      +M+   L  P  +++ T
Sbjct: 166 PAAKEVFDRMD-SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGL-KPNEHTMTT 220


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 306/547 (55%), Gaps = 13/547 (2%)

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
           IC+   LKS+ +  A  VFD +   D V+WN MI GYA+ G+     +MF +M+L GV+ 
Sbjct: 247 ICM--YLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKL 304

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           S   F   L   S        KQ+H  ++++G   +  +   +L+  Y K   +  AF +
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR-TALMVTYSKCSSVDEAFKL 363

Query: 203 FLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           F   +   ++++W ++I G   +   E A+D F  M   G  P+ +T S V+    K  +
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG--KPSS 421

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L    Q+ A  +K  +     V +A +D + K   + +S R+F  +   D    + M++ 
Sbjct: 422 LLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTG 479

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS--SIPIPPVEHGSQFHSMAIKSGFDS 379
             +    E A+E+F  +++E ++P E+T S V++  S     VEHG Q H+ A+KSG  +
Sbjct: 480 LAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSN 539

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              V+S+L+ MY+K G+I+S+ ++F + ++RD+VSWN+++ G  Q+G A + L+VF+ + 
Sbjct: 540 ALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQ 599

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
            +GLP D +T   VL AC + G V++G   F+ M ++Y +    EHY+C++DL  +AG  
Sbjct: 600 NQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMF 659

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            KA+DI + MPF    +IW ++L A  ++ +++L +  AE+++ LQ    + Y LL+  +
Sbjct: 660 DKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIH 719

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A+ G WE    V+K+M +  + K  GCSWI IKNRI++F AG++ H     +Y  L  L+
Sbjct: 720 AVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELS 779

Query: 620 WEMEDEG 626
            +++D G
Sbjct: 780 IKLKDMG 786



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 240/465 (51%), Gaps = 19/465 (4%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K+++ +    +FDE+   +VVSW S++SGYA  G +D  + + ++MQ++GV P+GFTF+
Sbjct: 150 MKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFA 209

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L  ++       G Q+H  ++++G   +  V  N+LI MY K  ++  A  VF +M  
Sbjct: 210 TVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC-NALICMYLKSEMVGDAEAVFDSMVV 268

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D ++WN +I G    G+       F+ MR +G           +  C++ R L+  KQ+
Sbjct: 269 RDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQL 328

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGF 327
               VK G+     + +A +  +SKC+ ++++ +LF   D     V    MI  + +   
Sbjct: 329 HCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            E A++LF  M RE +RP  FT S VL+  P   +   SQ H+  IK+ ++    VA++L
Sbjct: 389 NEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVATAL 445

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++ Y KTG++  S  +F  +  +D+V+W+ ++ GL Q   + + ++VF +L++EG+ P+ 
Sbjct: 446 LDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNE 505

Query: 448 ITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQAGQLGKA 502
            T ++V+ AC +    V+ G  + +       V  G+ +  C+    + +  + G +  A
Sbjct: 506 YTFSSVINACSSSAATVEHGKQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESA 560

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
             + +    +   S W S++     +GD K    V + M +  LP
Sbjct: 561 EKVFTRQEERDIVS-WNSMITGYGQHGDAKKALEVFQIMQNQGLP 604



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 177/363 (48%), Gaps = 12/363 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A ++FDE P  D+  +N ++  ++   +   AL +F  +   G+   G T S  L     
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 159 --SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G+Q+H   ++SG  L +V +G SL+DMY K        G+F  M   +++SW S
Sbjct: 117 LFDQVVGRQVHCQSLKSGF-LEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           L+SG   +G  +  +     M+  G +P+ +T + V+ A      ++ G QV A+ VK G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F   + V +A I ++ K   + D+  +F+ +   D    N+MI  Y   GF    LE FQ
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF---YLEGFQ 292

Query: 337 LMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +  R  +   + + +   +++ +      +    Q H   +K+G++    + ++LM  Y+
Sbjct: 293 MFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYS 352

Query: 393 KTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           K  S+D + ++F   D   ++V+W  ++ G  QN    + +D+F ++  EG+ P+  T +
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYS 412

Query: 452 AVL 454
            VL
Sbjct: 413 TVL 415



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 137/283 (48%), Gaps = 37/283 (13%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWN 85
           L+ K       +H  + K  +     +    LD Y + G   +  ++F  IP K+ ++W+
Sbjct: 415 LAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWS 474

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
             L GL ++ +                               S+ A+E+F ++  +GV+P
Sbjct: 475 AMLTGLAQTRD-------------------------------SEKAMEVFIQLVKEGVKP 503

Query: 146 SGFTFSILLSTVSSAC----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           + +TFS +++  SS+     HGKQIH + ++SG S + + + ++L+ MY K G +  A  
Sbjct: 504 NEYTFSSVINACSSSAATVEHGKQIHATAVKSGKS-NALCVSSALLTMYSKKGNIESAEK 562

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF   EE DI+SWNS+I+G    G  + AL+ F  M+  G   D+ T   V+ ACT    
Sbjct: 563 VFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGL 622

Query: 262 LDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRL 303
           +++G++ F + +K   +   I   S  +DL+S+    + ++ +
Sbjct: 623 VEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDI 665



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 1/262 (0%)

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  +F      DI  +N L+     + +   AL  F  +  SG   D  T+S  +  C 
Sbjct: 56  YAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCG 115

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +   G+QV   S+K GFL +  V ++ +D++ K    ED   +F+++   +      
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSG 376
           ++S Y R G  +  + L   M  E + P  FT + VL ++     +E G Q H+M +K+G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+    V ++L+ MY K+  +  +  +F  +  RD V+WN ++ G    G   E   +F 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 437 ELLEEGLPPDRITLAAVLLACN 458
            +   G+   R      L  C+
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCS 317



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 1/171 (0%)

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           +LF++    D +  N ++  + R      AL LF+ +    +     TLSC L    +  
Sbjct: 59  QLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLF 118

Query: 362 VEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +  G Q H  ++KSGF  +  V +SL++MY KT   +    IF ++  +++VSW +++ 
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           G  +NG   E + +  ++  EG+ P+  T A VL A      ++ G+ V +
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 295/547 (53%), Gaps = 20/547 (3%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           ++ + A KVFD++ E +VV+W  MI+     G+   A+  F  M L G     FT    L
Sbjct: 217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT----L 272

Query: 155 STVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFGVFL 204
           S+V SAC        GKQ+H   IRSGL + +V    SL+DMY K    G +     VF 
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGL-VDDVEC--SLVDMYAKCSADGSVDDCRKVFD 329

Query: 205 NMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNL 262
            ME+  ++SW +LI+G   N      A++ F  M   G+  P+ +T S    AC  L + 
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             GKQV   + K G  SNS V ++ I +F K +R+ED+ R FE L   +    N  +   
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            R    E A +L   +   ++  + FT + +LS +  +  +  G Q HS  +K G   N 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V ++L+ MY+K GSID+++ +F  ++ R+++SW +++ G  ++G A   L+ F +++EE
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ P+ +T  A+L AC++ G V +G   F++M E++ + P  EHYAC++DLLC+AG L  
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A +  +TMPFQ    +W + L A  ++ + +L +  A ++++L    P  Y  L+  YA 
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G+WE    +++ M++  + K  GCSWI + ++I+ F  G+  H    +IY  L  L  E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749

Query: 622 MEDEGCV 628
           ++  G V
Sbjct: 750 IKRCGYV 756



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/560 (23%), Positives = 268/560 (47%), Gaps = 51/560 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C+  + F   K +H  L +      + L N  + LYS+ G S     +F+ + +
Sbjct: 66  SSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRR 125

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                         + DVVSW++M++ Y + G    A+++F + 
Sbjct: 126 ----------------------------FGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-LG 194
              G+ P+ + ++ ++   S++     G+   G ++++G   S+V +G SLIDM+ K   
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               A+ VF  M EL++++W  +I+ C   G+   A+  F  M  SG+  D++T+S V +
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWD 311
           AC +L NL  GKQ+ + +++ G + +  V  + +D+++KC+    ++D  ++F++++  D
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRME--D 333

Query: 312 YAVIN--VMISTYGRY-GFGEVALELFQLMLRE-DIRPTEFTLSCVLSS---IPIPPVEH 364
           ++V++   +I+ Y +       A+ LF  M+ +  + P  FT S    +   +  P V  
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV-- 391

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q    A K G  SN+ VA+S++ M+ K+  ++ +   F  L +++LVS+NT + G  +
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           N    +   +  E+ E  L     T A++L      G + KG  + S +  + G+   + 
Sbjct: 452 NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCNQP 510

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG-DVKLTENVAERMMD 543
               +I +  + G +  A  + + M  +   S W S++   A +G  +++ E   + + +
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVIS-WTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 544 LQLPSPLPYSLLTQAYAMRG 563
              P+ + Y  +  A +  G
Sbjct: 570 GVKPNEVTYVAILSACSHVG 589



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 169/342 (49%), Gaps = 18/342 (5%)

Query: 131 ALEMFSKMQLQGVRP-SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
           A+     M   G+RP    TFS LL +   A     GK +H  +I   +   + VL NSL
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIE-PDSVLYNSL 103

Query: 187 IDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           I +Y K G    A  VF  M      D++SW+++++   N+G    A+  F      G  
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATIDLFSKC-NRLEDSV 301
           P++Y  + VI AC+    +  G+      +K G F S+  V  + ID+F K  N  E++ 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           ++F+++   +     +MI+   + GF   A+  F  M+       +FTLS V S+   + 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT---GSIDSSTEIFVKLDKRDLVSWNT 417
            +  G Q HS AI+SG   +  V  SL++MYAK    GS+D   ++F +++   ++SW  
Sbjct: 284 NLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341

Query: 418 IMMGLTQN-GRAAETLDVFEELLEEG-LPPDRITLAAVLLAC 457
           ++ G  +N   A E +++F E++ +G + P+  T ++   AC
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 36/271 (13%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S  + + HV     ++ S     C +       K + G  FK G  +++ + N  + ++ 
Sbjct: 361 SEMITQGHVEPNHFTFSSAF-KACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFV 419

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
           +    +D  + F+ + +KN +S+N  L G  ++ N + A K+  EI E ++         
Sbjct: 420 KSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL--------- 470

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLS 178
                               GV  S FTF+ LLS    V S   G+QIH  +++ GLS +
Sbjct: 471 --------------------GV--SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
             V  N+LI MY K G +  A  VF  ME  ++ISW S+I+G    G+    L+ F  M 
Sbjct: 509 QPVC-NALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMI 567

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
             G  P+E T   +++AC+ +  + +G + F
Sbjct: 568 EEGVKPNEVTYVAILSACSHVGLVSEGWRHF 598



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 331 ALELFQLMLREDIRPTE-FTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           A+    LM R+ IRP +  T S +L S I       G   H+  I+   + ++V+ +SL+
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 389 EMYAKTGSIDSSTEIF---VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            +Y+K+G    + ++F    +  KRD+VSW+ +M     NGR  + + VF E LE GL P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 446 DRITLAAVLLACNYGGFVDKGMLVF 470
           +     AV+ AC+   FV  G +  
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTL 189


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 302/538 (56%), Gaps = 5/538 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   LD   K+F  +P  D+V+WN MISG    G+ D AL +F  MQ  G+RP   T   
Sbjct: 294 KCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL  ++       GK++HG ++R+ + + +V L ++L+D+Y K   +  A  V+ + + +
Sbjct: 354 LLPALTDLNGFNQGKELHGYIVRNCVHM-DVFLVSALVDIYFKCRAVRMAQSVYDSSKAI 412

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++  +++ISG   +G  + A+  F  +   G  P+   I+ V+ AC  +  +  G+++ 
Sbjct: 413 DVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELH 472

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           + ++K  +     V SA +D+++KC RL+ S  +F ++   D    N MIS++ + G  E
Sbjct: 473 SYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPE 532

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF+ M  E ++ +  T+S VLS+   +P + +G + H + IK    ++    S+L+
Sbjct: 533 EALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALI 592

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G+++ +  +F  + +++ VSWN+I+      G   E++ +   + EEG   D +
Sbjct: 593 DMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHV 652

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A++ AC + G V +G+ +F  M EEY + P  EH+AC++DL  +AG+L KA+++   
Sbjct: 653 TFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVD 712

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF+P   IW ++L A  ++ +V+L E  ++ +  L   +   Y L++   A+ GRW+ +
Sbjct: 713 MPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGV 772

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +V+++M+   + K+ G SW+ + N  + F A +  H   + IY+ L+ +  E+ +EG
Sbjct: 773 SKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEG 830



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/537 (27%), Positives = 258/537 (48%), Gaps = 58/537 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    + +H     LG +   ++G+  + +Y+  G                
Sbjct: 152 VVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGG---------------- 195

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + W+              A +VFD + E D V WN M+ GY   G    A+E+F  M+ 
Sbjct: 196 -LLWD--------------ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRA 240

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T +  LS   T S    G Q+H   ++ GL  S V + N+L+ MY K   L 
Sbjct: 241 SGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLE-SEVAVANTLVSMYAKCKCLD 299

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
             + +F  M   D+++WN +ISGC  +G+ + AL  F  M+ SG  PD  T+  ++ A T
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L   ++GK++    V+     +  ++SA +D++ KC  +  +  +++     D  + + 
Sbjct: 360 DLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGST 419

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y   G  + A+++F+ +L + IRP    ++ VL +   +  ++ G + HS A+K+ 
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA 479

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++    V S+LM+MYAK G +D S  IF K+  +D V+WN+++    QNG   E L++F 
Sbjct: 480 YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFR 539

Query: 437 ELLEEGLPPDRITLAAVLLACN------YG----GFVDKGMLVFSAMKEEYGVMPGEEHY 486
           E+  EG+    +T+++VL AC       YG    G V KG +      E           
Sbjct: 540 EMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAE----------- 588

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           + +ID+  + G L  A  +  +MP +   S W SI+ +   YG VK + ++   M +
Sbjct: 589 SALIDMYGKCGNLEWAHRVFESMPEKNEVS-WNSIIASYGAYGLVKESVSLLRHMQE 644



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 240/529 (45%), Gaps = 48/529 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNA-HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC-- 81
           C+S         +HG     G +A  T L  R + +Y       D + +F  +P+     
Sbjct: 49  CVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAAC 108

Query: 82  -ISWNICLRGLLKSDNLDTALKVFDEI------PEPDVVSWNSMISGYASCGYSDYALEM 134
            + WN  +RGL  + +  +AL  + ++      P PD  ++  ++   A+ G        
Sbjct: 109 ALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALG-------- 160

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
                           +I L        G+ +H +    GL   ++ +G++LI MY   G
Sbjct: 161 ----------------AIAL--------GRLVHRTARTLGLD-GDMFVGSALIKMYANGG 195

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +L+ A  VF  M E D + WN ++ G   +G    A++ F  MR SG  P+  T++  ++
Sbjct: 196 LLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLS 255

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
                 +L  G Q+  L+VK G  S   V +  + +++KC  L+D  +LF  + R D   
Sbjct: 256 VSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVT 315

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N MIS   + GF + AL LF  M +  IRP   TL  +L ++  +     G + H   +
Sbjct: 316 WNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIV 375

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++    +  + S+L+++Y K  ++  +  ++      D+V  +T++ G   NG + E + 
Sbjct: 376 RNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVK 435

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDL 492
           +F  LLE+G+ P+ + +A+VL AC     +  G  + S A+K  Y      E  + ++D+
Sbjct: 436 MFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDM 493

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             + G+L  +  I S +  +   + W S++ + A  G+ +   N+   M
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVT-WNSMISSFAQNGEPEEALNLFREM 541



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 190/421 (45%), Gaps = 39/421 (9%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++K+ +   S++  S L+        F+  K +HG++ +   +   +L +  +D+Y    
Sbjct: 339 MQKSGIRPDSVTLVS-LLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIY---- 393

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                       K   +  A  V+D     DVV  ++MISGY  
Sbjct: 394 ---------------------------FKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
            G S  A++MF  +  QG+RP+    + +L   +S      G+++H   +++        
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE-GRCY 485

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + ++L+DMY K G L  +  +F  +   D ++WNS+IS    +G  E AL+ F  M   G
Sbjct: 486 VESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEG 545

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
                 TIS V++AC  L  +  GK++  + +K    ++    SA ID++ KC  LE + 
Sbjct: 546 VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAH 605

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIP 360
           R+FE +   +    N +I++YG YG  + ++ L + M  E  +    T L+ V +     
Sbjct: 606 RVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAG 665

Query: 361 PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTI 418
            V+ G + F  M  +          + ++++Y++ G +D + E+ V +  K D   W  +
Sbjct: 666 QVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGAL 725

Query: 419 M 419
           +
Sbjct: 726 L 726



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 37/308 (12%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M  YL +  +   +++  S ++  C S  +    + +H +  K  +    Y+ +  +D+Y
Sbjct: 436 MFRYLLEQGIRPNAVAIAS-VLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMY 494

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           ++ G  D    +F +I  K+ ++W                               NSMIS
Sbjct: 495 AKCGRLDLSHYIFSKISAKDEVTW-------------------------------NSMIS 523

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSL 177
            +A  G  + AL +F +M ++GV+ S  T S +LS  +S     +GK+IHG +I+  +  
Sbjct: 524 SFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR- 582

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           +++   ++LIDMYGK G L +A  VF +M E + +SWNS+I+     G  + ++     M
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNR 296
           +  G+  D  T   +++AC     + +G ++F  ++ +          +  +DL+S+  +
Sbjct: 643 QEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGK 702

Query: 297 LEDSVRLF 304
           L+ ++ L 
Sbjct: 703 LDKAMELI 710



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 67/274 (24%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S  +  + K IHG + K    A  +  +  +D+Y + G  +   ++F+ +P+
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPE 613

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                                VSWNS+I+ Y + G    ++ +   M
Sbjct: 614 KN-------------------------------EVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           Q +G +    TF   L+ VS+  H  Q     ++ GL L   +               ++
Sbjct: 643 QEEGFKADHVTF---LALVSACAHAGQ-----VQEGLRLFRCMTEEYQIAPRMEHFACMV 694

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM--RYSG 241
           D+Y + G L  A  + ++M  + D   W +L+  C    N    E+A  + + +    SG
Sbjct: 695 DLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSG 754

Query: 242 YSPDEYTISIVINA-------CTKLRNLDKGKQV 268
           Y    Y +   INA        +K+R L K  +V
Sbjct: 755 Y----YVLMSNINAVAGRWDGVSKVRRLMKDTKV 784


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 302/538 (56%), Gaps = 5/538 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   LD   K+F  +P  D+V+WN MISG    G+ D AL +F  MQ  G+RP   T   
Sbjct: 294 KCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL  ++       GK++HG ++R+ + + +V L ++L+D+Y K   +  A  V+ + + +
Sbjct: 354 LLPALTDLNGFNQGKELHGYIVRNCVHM-DVFLVSALVDIYFKCRAVRMAQSVYDSSKAI 412

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++  +++ISG   +G  + A+  F  +   G  P+   I+ V+ AC  +  +  G+++ 
Sbjct: 413 DVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELH 472

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           + ++K  +     V SA +D+++KC RL+ S  +F ++   D    N MIS++ + G  E
Sbjct: 473 SYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPE 532

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF+ M  E ++ +  T+S VLS+   +P + +G + H + IK    ++    S+L+
Sbjct: 533 EALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALI 592

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G+++ +  +F  + +++ VSWN+I+      G   E++ +   + EEG   D +
Sbjct: 593 DMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHV 652

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A++ AC + G V +G+ +F  M EEY + P  EH+AC++DL  +AG+L KA+++   
Sbjct: 653 TFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVD 712

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF+P   IW ++L A  ++ +V+L E  ++ +  L   +   Y L++   A+ GRW+ +
Sbjct: 713 MPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGV 772

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +V+++M+   + K+ G SW+ + N  + F A +  H   + IY+ L+ +  E+ +EG
Sbjct: 773 SKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEG 830



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 149/537 (27%), Positives = 258/537 (48%), Gaps = 58/537 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    + +H     LG +   ++G+  + +Y+  G                
Sbjct: 152 VVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGG---------------- 195

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + W+              A +VFD + E D V WN M+ GY   G    A+E+F  M+ 
Sbjct: 196 -LLWD--------------ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRA 240

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T +  LS   T S    G Q+H   ++ GL  S V + N+L+ MY K   L 
Sbjct: 241 SGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLE-SEVAVANTLVSMYAKCKCLD 299

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
             + +F  M   D+++WN +ISGC  +G+ + AL  F  M+ SG  PD  T+  ++ A T
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L   ++GK++    V+     +  ++SA +D++ KC  +  +  +++     D  + + 
Sbjct: 360 DLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGST 419

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y   G  + A+++F+ +L + IRP    ++ VL +   +  ++ G + HS A+K+ 
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA 479

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++    V S+LM+MYAK G +D S  IF K+  +D V+WN+++    QNG   E L++F 
Sbjct: 480 YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFR 539

Query: 437 ELLEEGLPPDRITLAAVLLACN------YG----GFVDKGMLVFSAMKEEYGVMPGEEHY 486
           E+  EG+    +T+++VL AC       YG    G V KG +      E           
Sbjct: 540 EMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAE----------- 588

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           + +ID+  + G L  A  +  +MP +   S W SI+ +   YG VK + ++   M +
Sbjct: 589 SALIDMYGKCGNLEWAHRVFESMPEKNEVS-WNSIIASYGAYGLVKESVSLLRHMQE 644



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 240/529 (45%), Gaps = 48/529 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNA-HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC-- 81
           C+S         +HG     G +A  T L  R + +Y       D + +F  +P+     
Sbjct: 49  CVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAAC 108

Query: 82  -ISWNICLRGLLKSDNLDTALKVFDEI------PEPDVVSWNSMISGYASCGYSDYALEM 134
            + WN  +RGL  + +  +AL  + ++      P PD  ++  ++   A+ G        
Sbjct: 109 ALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALG-------- 160

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
                           +I L        G+ +H +    GL   ++ +G++LI MY   G
Sbjct: 161 ----------------AIAL--------GRLVHRTARTLGLD-GDMFVGSALIKMYANGG 195

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +L+ A  VF  M E D + WN ++ G   +G    A++ F  MR SG  P+  T++  ++
Sbjct: 196 LLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLS 255

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
                 +L  G Q+  L+VK G  S   V +  + +++KC  L+D  +LF  + R D   
Sbjct: 256 VSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVT 315

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N MIS   + GF + AL LF  M +  IRP   TL  +L ++  +     G + H   +
Sbjct: 316 WNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIV 375

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++    +  + S+L+++Y K  ++  +  ++      D+V  +T++ G   NG + E + 
Sbjct: 376 RNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVK 435

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDL 492
           +F  LLE+G+ P+ + +A+VL AC     +  G  + S A+K  Y      E  + ++D+
Sbjct: 436 MFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDM 493

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             + G+L  +  I S +  +   + W S++ + A  G+ +   N+   M
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVT-WNSMISSFAQNGEPEEALNLFREM 541



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 190/421 (45%), Gaps = 39/421 (9%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++K+ +   S++  S L+        F+  K +HG++ +   +   +L +  +D+Y    
Sbjct: 339 MQKSGIRPDSVTLVS-LLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIY---- 393

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                       K   +  A  V+D     DVV  ++MISGY  
Sbjct: 394 ---------------------------FKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
            G S  A++MF  +  QG+RP+    + +L   +S      G+++H   +++        
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE-GRCY 485

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + ++L+DMY K G L  +  +F  +   D ++WNS+IS    +G  E AL+ F  M   G
Sbjct: 486 VESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEG 545

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
                 TIS V++AC  L  +  GK++  + +K    ++    SA ID++ KC  LE + 
Sbjct: 546 VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAH 605

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIP 360
           R+FE +   +    N +I++YG YG  + ++ L + M  E  +    T L+ V +     
Sbjct: 606 RVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAG 665

Query: 361 PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTI 418
            V+ G + F  M  +          + ++++Y++ G +D + E+ V +  K D   W  +
Sbjct: 666 QVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGAL 725

Query: 419 M 419
           +
Sbjct: 726 L 726



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 67/274 (24%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S  +  + K IHG + K    A  +  +  +D+Y + G  +   ++F+ +P+
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPE 613

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                                VSWNS+I+ Y + G    ++ +   M
Sbjct: 614 KN-------------------------------EVSWNSIIASYGAYGLVKESVSLLRHM 642

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           Q +G +    TF   L+ VS+  H  Q     ++ GL L   +               ++
Sbjct: 643 QEEGFKADHVTF---LALVSACAHAGQ-----VQEGLRLFRCMTEEYQIAPRMEHFACMV 694

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM--RYSG 241
           D+Y + G L  A  + ++M  + D   W +L+  C    N    E+A  + + +    SG
Sbjct: 695 DLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSG 754

Query: 242 YSPDEYTISIVINA-------CTKLRNLDKGKQV 268
           Y    Y +   INA        +K+R L K  +V
Sbjct: 755 Y----YVLMSNINAVAGRWDGVSKVRRLMKDTKV 784


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 178/547 (32%), Positives = 306/547 (55%), Gaps = 13/547 (2%)

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
           IC+   LKS+ +  A  VFD +   D V+WN MI GYA+ G+     +MF +M+L GV+ 
Sbjct: 247 ICM--YLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKL 304

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           S   F   L   S        KQ+H  ++++G   +  +   +L+  Y K   +  AF +
Sbjct: 305 SRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR-TALMVTYSKCSSVDEAFKL 363

Query: 203 FLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           F   +   ++++W ++I G   +   + A+D F  M   G  P+ +T S V+    K  +
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG--KPSS 421

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L    Q+ A  +K  +     V +A +D + K   + +S R+F  +   D    + M++ 
Sbjct: 422 LLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTG 479

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS--SIPIPPVEHGSQFHSMAIKSGFDS 379
             +    E A+E+F  +++E ++P E+T S V++  S     VEHG Q H+ A+KSG  +
Sbjct: 480 LAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSN 539

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              V+S+L+ MY+K G+I+S+ ++F + ++RD+VSWN+++ G  Q+G A + L+VF+ + 
Sbjct: 540 ALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQ 599

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
            +GLP D +T   VL AC + G V++G   F+ M ++Y +    EHY+C++DL  +AG  
Sbjct: 600 NQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMF 659

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            KA+DI + MPF    +IW ++L A  ++ +++L +  AE+++ LQ    + Y LL+  +
Sbjct: 660 DKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIH 719

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A+ G WE    V+K+M +  + K  GCSWI IKNRI++F AG++ H     +Y  L  L+
Sbjct: 720 AVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELS 779

Query: 620 WEMEDEG 626
            +++D G
Sbjct: 780 IKLKDMG 786



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 240/465 (51%), Gaps = 19/465 (4%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K+++ +    +FDE+   +VVSW S++SGYA  G +D  + + ++MQ++GV P+GFTF+
Sbjct: 150 MKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFA 209

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L  ++       G Q+H  ++++G   +  V  N+LI MY K  ++  A  VF +M  
Sbjct: 210 TVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC-NALICMYLKSEMVGDAEAVFDSMVV 268

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D ++WN +I G    G+       F+ MR +G           +  C++ R L+  KQ+
Sbjct: 269 RDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQL 328

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGF 327
               VK G+     + +A +  +SKC+ ++++ +LF   D     V    MI  + +   
Sbjct: 329 HCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            + A++LF  M RE +RP  FT S VL+  P   +   SQ H+  IK+ ++    VA++L
Sbjct: 389 NKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVATAL 445

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++ Y KTG++  S  +F  +  +D+V+W+ ++ GL Q   + + ++VF +L++EG+ P+ 
Sbjct: 446 LDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNE 505

Query: 448 ITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQAGQLGKA 502
            T ++V+ AC +    V+ G  + +       V  G+ +  C+    + +  + G +  A
Sbjct: 506 YTFSSVINACSSSAATVEHGKQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESA 560

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
             + +    +   S W S++     +GD K    V + M +  LP
Sbjct: 561 EKVFTRQEERDIVS-WNSMITGYGQHGDAKKALEVFQIMQNQGLP 604



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 177/363 (48%), Gaps = 12/363 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A ++FDE P  D+  +N ++  ++   +   AL +F  +   G+   G T S  L     
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 159 --SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G+Q+H   ++SG  L +V +G SL+DMY K        G+F  M   +++SW S
Sbjct: 117 LFDQVVGRQVHCQSLKSGF-LEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           L+SG   +G  +  +     M+  G +P+ +T + V+ A      ++ G QV A+ VK G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F   + V +A I ++ K   + D+  +F+ +   D    N+MI  Y   GF    LE FQ
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF---YLEGFQ 292

Query: 337 LMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +  R  +   + + +   +++ +      +    Q H   +K+G++    + ++LM  Y+
Sbjct: 293 MFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYS 352

Query: 393 KTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           K  S+D + ++F   D   ++V+W  ++ G  QN    + +D+F ++  EG+ P+  T +
Sbjct: 353 KCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYS 412

Query: 452 AVL 454
            VL
Sbjct: 413 TVL 415



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 37/283 (13%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWN 85
           L+ K       +H  + K  +     +    LD Y + G   +  ++F  IP K+ ++W+
Sbjct: 415 LAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWS 474

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
             L GL ++ +                               S+ A+E+F ++  +GV+P
Sbjct: 475 AMLTGLAQTRD-------------------------------SEKAMEVFIQLVKEGVKP 503

Query: 146 SGFTFSILLSTVSSAC----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           + +TFS +++  SS+     HGKQIH + ++SG S + + + ++L+ MY K G +  A  
Sbjct: 504 NEYTFSSVINACSSSAATVEHGKQIHATAVKSGKS-NALCVSSALLTMYSKKGNIESAEK 562

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF   EE DI+SWNS+I+G    G  + AL+ F  M+  G   D+ T   V+ ACT    
Sbjct: 563 VFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGL 622

Query: 262 LDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRL 303
           +++G++ F + +K   +       S  +DL+S+    + ++ +
Sbjct: 623 VEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDI 665



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 1/262 (0%)

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  +F      DI  +N L+     + +   AL  F  +  SG   D  T+S  +  C 
Sbjct: 56  YAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCG 115

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +   G+QV   S+K GFL +  V ++ +D++ K    ED   +F+++   +      
Sbjct: 116 VLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSG 376
           ++S Y R G  +  + L   M  E + P  FT + VL ++     +E G Q H+M +K+G
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNG 235

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+    V ++L+ MY K+  +  +  +F  +  RD V+WN ++ G    G   E   +F 
Sbjct: 236 FEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 437 ELLEEGLPPDRITLAAVLLACN 458
            +   G+   R      L  C+
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCS 317



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 1/171 (0%)

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           +LF++    D +  N ++  + R      AL LF+ +    +     TLSC L    +  
Sbjct: 59  QLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLF 118

Query: 362 VEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +  G Q H  ++KSGF  +  V +SL++MY KT   +    IF ++  +++VSW +++ 
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           G  +NG   E + +  ++  EG+ P+  T A VL A      ++ G+ V +
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/601 (30%), Positives = 314/601 (52%), Gaps = 37/601 (6%)

Query: 31   FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
             +  K IHG + + G +    +GN  +++Y                              
Sbjct: 922  LELGKQIHGIVVRSGLDQVVSVGNCLINMY------------------------------ 951

Query: 91   LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
             +K+ ++  A  VF ++ E D+VSWN+MISG A  G  + ++ MF  +   G+ P  FT 
Sbjct: 952  -VKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTV 1010

Query: 151  SILLSTVSS---ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + +L   SS    CH   QIH   +++G+ L + V   +LID+Y K G +  A  +F+N 
Sbjct: 1011 ASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV-STTLIDVYSKSGKMEEAEFLFVNQ 1069

Query: 207  EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +  D+ SWN+++ G   SG    AL  +  M+ SG   ++ T++    A   L  L +GK
Sbjct: 1070 DGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGK 1129

Query: 267  QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            Q+ A+ VK GF  +  V+S  +D++ KC  +E + R+F ++   D      MIS     G
Sbjct: 1130 QIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENG 1189

Query: 327  FGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVAS 385
              E AL  +  M    ++P E+T + ++ +  +   +E G Q H+  +K     +  V +
Sbjct: 1190 QEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMT 1249

Query: 386  SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            SL++MYAK G+I+ +  +F + +   + SWN +++GL Q+G A E L  FEE+   G+ P
Sbjct: 1250 SLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTP 1309

Query: 446  DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            DR+T   VL AC++ G V +    F +M++ YG+ P  EHY+C++D L +AG++ +A  +
Sbjct: 1310 DRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKV 1369

Query: 506  TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             S+MPF+   S++ ++L A  +  D +  + VAE+++ L+      Y LL+  YA   +W
Sbjct: 1370 ISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQW 1429

Query: 566  EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            E +   + +MRK  + K  G SW+ +KN+++ F AG+  H     IY  +  +   + +E
Sbjct: 1430 ENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREE 1489

Query: 626  G 626
            G
Sbjct: 1490 G 1490



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 243/499 (48%), Gaps = 53/499 (10%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            CL   S   A+++HG+  K+G     ++    +++Y++FG   +   LFD +  ++ + W
Sbjct: 737  CLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLW 796

Query: 85   NICLRGLLKSDNLDTALKVFDEI------PE----------------------------- 109
            N+ ++  + +     AL +F E       P+                             
Sbjct: 797  NVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYG 856

Query: 110  ------------PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
                         DV++WN  +S +   G +  A++ F  M    V   G TF ++LS V
Sbjct: 857  TKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVV 916

Query: 158  SS-ACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
            +   C   GKQIHG ++RSGL    V +GN LI+MY K G +  A  VF  M E+D++SW
Sbjct: 917  AGLNCLELGKQIHGIVVRSGLD-QVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSW 975

Query: 215  NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL-RNLDKGKQVFALSV 273
            N++ISGC  SG  E ++  F  +   G  PD++T++ V+ AC+ L        Q+ A ++
Sbjct: 976  NTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAM 1035

Query: 274  KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
            K G + +S V +  ID++SK  ++E++  LF   D +D A  N M+  Y   G    AL 
Sbjct: 1036 KAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALR 1095

Query: 334  LFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            L+ LM     R  + TL+    ++  +  ++ G Q  ++ +K GF+ +  V S +++MY 
Sbjct: 1096 LYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYL 1155

Query: 393  KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
            K G ++S+  IF ++   D V+W T++ G  +NG+    L  +  +    + PD  T A 
Sbjct: 1156 KCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFAT 1215

Query: 453  VLLACNYGGFVDKGMLVFS 471
            ++ AC+    +++G  + +
Sbjct: 1216 LVKACSLLTALEQGRQIHA 1234



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 214/490 (43%), Gaps = 67/490 (13%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            ++   ++       K  H  +   G +   +L N  + +YS+ G+     +LFD  P   
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTP--- 688

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                             DT+          D+V+WN+++S +A      + L  F  ++ 
Sbjct: 689  -----------------DTSR---------DLVTWNAILSAHADKARDGFHL--FRLLRR 720

Query: 141  QGVRPSGFTFS-----ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              V  +  T +      LLS   SA   + +HG  ++ GL   +V +  +L+++Y K G 
Sbjct: 721  SFVSATRHTLAPVFKMCLLSASPSA--AESLHGYAVKIGLQW-DVFVAGALVNIYAKFGR 777

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            +  A  +F  M   D++ WN ++    ++G    AL  F     +G  PD+ T+      
Sbjct: 778  IREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL------ 831

Query: 256  CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            CT  R +   + V    +K        + +    LF   +  + S          D    
Sbjct: 832  CTLARVVKSKQNVLEWQLKQ-------LKAYGTKLFMYDDDDDGS----------DVIAW 874

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            N  +S + + G    A++ F  M+   +     T   +LS +  +  +E G Q H + ++
Sbjct: 875  NKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVR 934

Query: 375  SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            SG D    V + L+ MY KTGS+  +  +F ++++ DLVSWNT++ G   +G    ++ +
Sbjct: 935  SGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGM 994

Query: 435  FEELLEEGLPPDRITLAAVLLACNY--GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            F +LL  GL PD+ T+A+VL AC+   GG      +   AMK   GV+        +ID+
Sbjct: 995  FVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKA--GVVLDSFVSTTLIDV 1052

Query: 493  LCQAGQLGKA 502
              ++G++ +A
Sbjct: 1053 YSKSGKMEEA 1062



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 171/392 (43%), Gaps = 61/392 (15%)

Query: 150 FSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           FSIL   ++++    GK+ H  ++ SG    +  L N+LI MY K G L  A  +F    
Sbjct: 630 FSILRHAIAASDLPLGKRAHARILTSGHH-PDRFLTNNLITMYSKCGSLSSARKLFDTTP 688

Query: 208 EL--DIISWNSLISGCFNSGYGELALDQFYS---MRYSGYSPDEYTISIVINACTKLRNL 262
           +   D+++WN+++S      + + A D F+    +R S  S   +T++ V   C    + 
Sbjct: 689 DTSRDLVTWNAILSA-----HADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASP 743

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
              + +   +VK+G   +  V  A +++++K  R+ ++  LF+ +   D  + NVM+  Y
Sbjct: 744 SAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAY 803

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
              G    AL LF    R  +RP + TL C L+ +               +KS      V
Sbjct: 804 VDTGLEYEALLLFSEFNRTGLRPDDVTL-CTLARV---------------VKS---KQNV 844

Query: 383 VASSLMEMYAKTGSIDSSTEIFV---KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           +   L ++ A        T++F+     D  D+++WN  +    Q G   E +D F +++
Sbjct: 845 LEWQLKQLKAY------GTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMI 898

Query: 440 EEGLPPDRITLAAVL-----LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
              +  D +T   +L     L C   G    G++V S + +   V        C+I++  
Sbjct: 899 NSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVG------NCLINMYV 952

Query: 495 QAGQLGKA---------IDITSTMPFQPGCSI 517
           + G + +A         +D+ S      GC++
Sbjct: 953 KTGSVSRARTVFWQMNEVDLVSWNTMISGCAL 984



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + L+  C    + +  + IH +  KL      ++    +D+Y++ G  +D   LF     
Sbjct: 1214 ATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1273

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
                SWN  + GL +  N + AL+ F+E+      PD V++  ++S  +  G    A E 
Sbjct: 1274 SRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYEN 1333

Query: 135  FSKMQ-LQGVRPSGFTFSILLSTVSSA 160
            F  MQ + G+ P    +S L+  +S A
Sbjct: 1334 FYSMQKIYGIEPEIEHYSCLVDALSRA 1360


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/593 (29%), Positives = 304/593 (51%), Gaps = 37/593 (6%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           HG+L KLGF     + N  +  Y+                               KS+ +
Sbjct: 433 HGYLVKLGFGTQCAVCNALISFYA-------------------------------KSNMI 461

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           D A+ VFD +P  D +SWNS+ISG  S G +  A+E+F +M +QG      T   +L   
Sbjct: 462 DNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPAC 521

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + + +   G+ +HG  +++GL +    L N+L+DMY      +    +F NM + +++SW
Sbjct: 522 ARSHYWFVGRVVHGYSVKTGL-IGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSW 580

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            ++I+    +G  +        M   G  PD + ++ V++      +L +GK V   +++
Sbjct: 581 TAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIR 640

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G      V +A ++++  C  +E++  +F+ +   D    N +I  Y R  F   +  L
Sbjct: 641 NGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSL 700

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  ML +  +P   T++C+L ++  I  +E G + H+ A++ GF  ++  +++L++MY K
Sbjct: 701 FSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVK 759

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G++  +  +F +L K++L+SW  ++ G   +G   + + +FE++   G+ PD  + +A+
Sbjct: 760 CGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAI 819

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC + G   +G   F+AM++EY + P  +HY CI+DLL   G L +A +   +MP +P
Sbjct: 820 LYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEP 879

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
             SIW S+L    I+ DVKL E VA+R+  L+  +   Y LL   YA   RWEA+ ++K 
Sbjct: 880 DSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKN 939

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +   G+ + TGCSWI ++ +++ F A    H    +I   L  +   M +EG
Sbjct: 940 KIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMREEG 992



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 194/382 (50%), Gaps = 17/382 (4%)

Query: 92  LKSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           LK  +L  A  VFDE+P    DV  W S++S YA  G     + +F +MQ  GV P    
Sbjct: 141 LKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHA 200

Query: 150 FSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S +L  ++S      G+ IHG + + GL  +  V  N+LI +Y + G +  A  VF +M
Sbjct: 201 VSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAV-ANALIALYSRCGCMEDAMQVFDSM 259

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D ISWNS ISG F++G+ + A+D F  M   G      T+  V+ AC +L     GK
Sbjct: 260 HARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGK 319

Query: 267 QVFALSVKVGFLSNSIVLSATID---------LFSKCNRLEDSVRLFEQL-DRWDYAVIN 316
            V   S+K G L +   + + ID         ++ KC  +  + R+F+ +  + +  V N
Sbjct: 320 VVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWN 379

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
           +++  Y +    E +L LF+ M    I P E  LSC+L  I  +     G   H   +K 
Sbjct: 380 LIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKL 439

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF +   V ++L+  YAK+  ID++  +F ++  +D +SWN+++ G T NG  +E +++F
Sbjct: 440 GFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELF 499

Query: 436 EELLEEGLPPDRITLAAVLLAC 457
             +  +G   D  TL +VL AC
Sbjct: 500 VRMWMQGHELDSTTLLSVLPAC 521



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 213/452 (47%), Gaps = 59/452 (13%)

Query: 24  RCL-SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCI 82
           +C+ S  S    + IHG L KLG      + N  + LYSR G  +D +Q+FD +  ++ I
Sbjct: 206 KCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAI 265

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
           SW                               NS ISGY S G+ D A+++FSKM  +G
Sbjct: 266 SW-------------------------------NSTISGYFSNGWHDRAVDLFSKMWSEG 294

Query: 143 VRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGL--SLSNV------VLGNSLI 187
              S    S+ + +V  AC        GK +HG  ++SGL   L +V       LG+ L+
Sbjct: 295 TEIS----SVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLV 350

Query: 188 DMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
            MY K G +  A  VF  M  + ++  WN ++ G   +   E +L  F  M   G +PDE
Sbjct: 351 FMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDE 410

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           + +S ++   T L     G       VK+GF +   V +A I  ++K N ++++V +F++
Sbjct: 411 HALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDR 470

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-- 364
           +   D    N +IS     G    A+ELF   +R  ++  E   + +LS +P     H  
Sbjct: 471 MPHQDTISWNSVISGCTSNGLNSEAIELF---VRMWMQGHELDSTTLLSVLPACARSHYW 527

Query: 365 --GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G   H  ++K+G      +A++L++MY+      S+ +IF  + ++++VSW  ++   
Sbjct: 528 FVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSY 587

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           T+ G   +   + +E++ +G+ PD   + +VL
Sbjct: 588 TRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 173/378 (45%), Gaps = 36/378 (9%)

Query: 169 SMIRSGLS-LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDIISWNSLISGCFNSG 225
           +++R+G   +   VLG  L+  Y K G L  A  VF  M     D+  W SL+S    +G
Sbjct: 118 ALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAG 177

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
             +  +  F  M+  G SPD + +S V+     L ++ +G+ +  L  K+G      V +
Sbjct: 178 DFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVAN 237

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A I L+S+C  +ED++++F+ +   D    N  IS Y   G+ + A++LF  M  E    
Sbjct: 238 ALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEG--- 294

Query: 346 TEFTLSCVLSSIP---------IPPVEHGSQFHS------MAIKSGFDSNAVVASSLMEM 390
           TE +   VLS +P         +  V HG    S       +++SG D    + S L+ M
Sbjct: 295 TEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDE--ALGSKLVFM 352

Query: 391 YAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           Y K G + S+  +F  +  K ++  WN IM G  +     E+L +FE++ E G+ PD   
Sbjct: 353 YVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHA 412

Query: 450 LAAVL-----LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           L+ +L     L+C   G V  G LV      +  V         +I    ++  +  A+ 
Sbjct: 413 LSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNA------LISFYAKSNMIDNAVL 466

Query: 505 ITSTMPFQPGCSIWESIL 522
           +   MP Q   S W S++
Sbjct: 467 VFDRMPHQDTIS-WNSVI 483



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 146/317 (46%), Gaps = 17/317 (5%)

Query: 252 VINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR- 309
           V+  C + R+L+  ++  AL     G +  S++    +  + KC  L  +  +F+++   
Sbjct: 100 VVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPR 159

Query: 310 -WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
             D  V   ++S Y + G  +  + LF+ M    + P    +SCVL  I  +  +  G  
Sbjct: 160 VADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEV 219

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H +  K G      VA++L+ +Y++ G ++ + ++F  +  RD +SWN+ + G   NG 
Sbjct: 220 IHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGW 279

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHY 486
               +D+F ++  EG     +T+ +VL AC   GF   G +V   +MK   G++   E  
Sbjct: 280 HDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKS--GLLWDLESV 337

Query: 487 ACIID---------LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
              ID         +  + G +G A  +   MP +    +W  I+   A   + + +  +
Sbjct: 338 QSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 538 AERMMDLQLPSPLPYSL 554
            E+M +L + +P  ++L
Sbjct: 398 FEQMHELGI-TPDEHAL 413



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 37/283 (13%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           +S    K++HG+  + G      + N  +++Y      ++   +FD +  K+ ISW    
Sbjct: 626 ESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISW---- 681

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                                      N++I GY+   +++ +  +FS M LQ  +P+  
Sbjct: 682 ---------------------------NTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTV 713

Query: 149 TFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           T + +L   +++SS   G++IH   +R G  L +    N+L+DMY K G L  A  +F  
Sbjct: 714 TMTCILPAVASISSLERGREIHAYALRRGF-LEDSYTSNALVDMYVKCGALLVARVLFDR 772

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           + + ++ISW  +I+G    G G+ A+  F  MR SG  PD  + S ++ AC       +G
Sbjct: 773 LTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEG 832

Query: 266 KQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            + F A+  +          +  +DL S    L+++    E +
Sbjct: 833 WKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESM 875



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 41/202 (20%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S +  + IH +  + GF   +Y  N  +D+Y + G       LFD + +KN ISW I
Sbjct: 724 SISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTI 783

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                                          MI+GY   G    A+ +F +M+  GV P 
Sbjct: 784 -------------------------------MIAGYGMHGCGKDAVALFEQMRGSGVEPD 812

Query: 147 GFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
             +FS +L    + CH      G +   +M +       +     ++D+    G L  AF
Sbjct: 813 TASFSAIL---YACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAF 869

Query: 201 GVFLNME-ELDIISWNSLISGC 221
               +M  E D   W SL+ GC
Sbjct: 870 EFIESMPIEPDSSIWVSLLHGC 891


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 187/615 (30%), Positives = 319/615 (51%), Gaps = 47/615 (7%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C   +  +  K IHG L K   ++  ++G+  ++LYS+ G  +D             
Sbjct: 112 LKSCSGLQKLELGKMIHGFL-KKKIDSDMFVGSALIELYSKCGQMND------------- 157

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ-L 140
                             A+KVF E P+PDVV W S+I+GY   G  + AL  FS+M  L
Sbjct: 158 ------------------AVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVL 199

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           + V P   T    L + +SAC        G+ +HG + R G   + + L NS++++YGK 
Sbjct: 200 EQVSPDPVT----LVSAASACAQLSDFNLGRSVHGFVKRRGFD-TKLCLANSILNLYGKT 254

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F  M   DIISW+S+++   ++G    AL+ F  M       +  T+   +
Sbjct: 255 GSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISAL 314

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC    NL++GKQ+  L+V  GF  +  V +A +D++ KC   E+++ LF ++ + D  
Sbjct: 315 RACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVV 374

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMA 372
              V+ S Y   G    +L +F  ML    RP    L  +L+ S  +  V+     H+  
Sbjct: 375 SWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFV 434

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            KSGFD+N  + +SL+E+YAK  SID++ ++F  L   D+V+W++I+     +G+  E L
Sbjct: 435 TKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEAL 494

Query: 433 DVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
            +  ++     + P+ +T  ++L AC++ G +++G+ +F  M  EY +MP  EHY  ++D
Sbjct: 495 KLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVD 554

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL + G+L KA+D+ + MP Q G  +W ++L A  I+ ++K+ E  A  +  L       
Sbjct: 555 LLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGY 614

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y+LL+  Y +   W    +++ ++++N + K+ G S + IKN +++F A +  H    +I
Sbjct: 615 YTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIASDRFHGESDQI 674

Query: 612 YLVLRLLTWEMEDEG 626
           Y +LR L   M +EG
Sbjct: 675 YEMLRKLDARMREEG 689



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 231/486 (47%), Gaps = 14/486 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV---RPSGFTFSILLST 156
           A K+F+E P   V  WN+++  Y   G     L +F +M    V   RP  +T SI L +
Sbjct: 55  AHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKS 114

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            S       GK IHG  ++  +  S++ +G++LI++Y K G +  A  VF    + D++ 
Sbjct: 115 CSGLQKLELGKMIHG-FLKKKID-SDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVL 172

Query: 214 WNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           W S+I+G   +G  ELAL  F  M      SPD  T+    +AC +L + + G+ V    
Sbjct: 173 WTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFV 232

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            + GF +   + ++ ++L+ K   +  +  LF ++   D    + M++ Y   G    AL
Sbjct: 233 KRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNAL 292

Query: 333 ELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M+ + I     T +S + +      +E G Q H +A+  GF+ +  V+++LM+MY
Sbjct: 293 NLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMY 352

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K  S +++ E+F ++ K+D+VSW  +  G  + G A ++L VF  +L  G  PD I L 
Sbjct: 353 LKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALV 412

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L A +  G V +  L   A   + G    E   A +I+L  +   +  A  +   +  
Sbjct: 413 KILAASSELGIVQQA-LCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLR- 470

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLLTQAYAMRGRWEAIV 569
                 W SI+ A   +G  +    ++ +M +     P+ + +  +  A +  G  E  +
Sbjct: 471 HTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGI 530

Query: 570 RVKKVM 575
           ++  VM
Sbjct: 531 KMFHVM 536



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 181/363 (49%), Gaps = 8/363 (2%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           LL T  S     Q+H   ++ GL+L + V+   L  +Y +   L +A  +F       + 
Sbjct: 10  LLETCCSKISITQLHSQCLKVGLALDSFVV-TKLNVLYARYASLCHAHKLFEETPCKTVY 68

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYS---PDEYTISIVINACTKLRNLDKGKQVF 269
            WN+L+   F  G     L  F+ M     +   PD YT+SI + +C+ L+ L+ GK + 
Sbjct: 69  LWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIH 128

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K    S+  V SA I+L+SKC ++ D+V++F +  + D  +   +I+ Y + G  E
Sbjct: 129 GF-LKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPE 187

Query: 330 VALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           +AL  F ++++ E + P   TL    S+   +     G   H    + GFD+   +A+S+
Sbjct: 188 LALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSI 247

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + +Y KTGSI  +  +F ++  +D++SW++++     NG     L++F E++++ +  +R
Sbjct: 248 LNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNR 307

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T+ + L AC     +++G  +   +   YG          ++D+  +      AI++ +
Sbjct: 308 VTVISALRACASSSNLEEGKQIHK-LAVNYGFELDITVSTALMDMYLKCFSPENAIELFN 366

Query: 508 TMP 510
            MP
Sbjct: 367 RMP 369



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 16/289 (5%)

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ +  +KVG   +S V++    L+++   L  + +LFE+       + N ++ +Y   G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 327 FGEVALELFQLMLREDI---RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
                L LF  M  + +   RP  +T+S  L S   +  +E G   H   +K   DS+  
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKIDSDMF 140

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-E 441
           V S+L+E+Y+K G ++ + ++F +  K D+V W +I+ G  QNG     L  F  ++  E
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC----IIDLLCQAG 497
            + PD +TL +   AC      + G  V   +K       G +   C    I++L  + G
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRR-----GFDTKLCLANSILNLYGKTG 255

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            +  A ++   MP++   S W S++   A  G      N+   M+D ++
Sbjct: 256 SIRIAANLFREMPYKDIIS-WSSMVACYADNGAETNALNLFNEMIDKRI 303



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 98/200 (49%), Gaps = 10/200 (5%)

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
           +Q HS  +K G   ++ V + L  +YA+  S+  + ++F +   + +  WN ++      
Sbjct: 21  TQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLE 80

Query: 426 GRAAETLDVFEELLEEGLP---PDRITLAAVLLACNYGGFVDKGMLVFSAMKE--EYGVM 480
           G+  ETL +F ++  + +    PD  T++  L +C+    ++ G ++   +K+  +  + 
Sbjct: 81  GKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKIDSDMF 140

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
            G    + +I+L  + GQ+  A+ + +  P +P   +W SI+      G  +L      R
Sbjct: 141 VG----SALIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQNGSPELALAFFSR 195

Query: 541 MMDLQLPSPLPYSLLTQAYA 560
           M+ L+  SP P +L++ A A
Sbjct: 196 MVVLEQVSPDPVTLVSAASA 215


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 310/543 (57%), Gaps = 9/543 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS---KMQLQGVRPSGFT 149
           K+  ++  LKVF  +PE +  +W++M+SGYA+ G  + A+++F+   + + +G   S + 
Sbjct: 165 KAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEG-SDSDYV 223

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           F+ +LS++++  +   G+QIH   I++GL L  V L N+L+ MY K   L  A  +F + 
Sbjct: 224 FTAVLSSLAATIYVGLGRQIHCITIKNGL-LGFVALSNALVTMYSKCESLNEACKMFDSS 282

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + + I+W+++++G   +G    A+  F  M  +G  P EYTI  V+NAC+ +  L++GK
Sbjct: 283 GDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGK 342

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ +  +K+GF  +    +A +D+++K   L D+ + F+ L   D A+   +IS Y +  
Sbjct: 343 QLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNS 402

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E AL L++ M    I P + T++ VL +   +  +E G Q H   IK GF     + S
Sbjct: 403 DNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGS 462

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L  MY+K GS++    +F +   +D+VSWN ++ GL+ NG+  E L++FEE+L EG+ P
Sbjct: 463 ALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEP 522

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T   ++ AC++ GFV++G   F+ M ++ G+ P  +HYAC++DLL +AGQL +A + 
Sbjct: 523 DDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEF 582

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             +     G  +W  +L A   +G  +L     E++M L       Y  L+  Y   GR 
Sbjct: 583 IESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRM 642

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
             + RV K MR NG++K  GCSWI +KN+ + F  G+  H   ++   ++ L++ +M +E
Sbjct: 643 RDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVCLVSRQMIEE 702

Query: 626 GCV 628
           G V
Sbjct: 703 GFV 705



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 203/383 (53%), Gaps = 10/383 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG--YSDYA-LEMFSKMQLQ 141
           N+ +    K   L  A  +F+ I   DVVSWNS+I+GY+  G   S Y  +++F +M+ Q
Sbjct: 53  NVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ 112

Query: 142 GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            + P+ +T + +    S++ S+  G+Q H  +++   S  ++ +  SL+ MY K G++  
Sbjct: 113 DILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMS-SFGDIYVDTSLVGMYCKAGLVED 171

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF--YSMRYSGYSPDEYTISIVINAC 256
              VF  M E +  +W++++SG    G  E A+  F  +       S  +Y  + V+++ 
Sbjct: 172 GLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSL 231

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                +  G+Q+  +++K G L    + +A + ++SKC  L ++ ++F+     +    +
Sbjct: 232 AATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWS 291

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            M++ Y + G    A++LF  M    I+P+E+T+  VL++   I  +E G Q HS  +K 
Sbjct: 292 AMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKL 351

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF+ +    ++L++MYAK G +  + + F  L +RD+  W +++ G  QN    E L ++
Sbjct: 352 GFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILY 411

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
             +   G+ P+  T+A+VL AC+
Sbjct: 412 RRMKTAGIIPNDPTMASVLKACS 434



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 181/349 (51%), Gaps = 14/349 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +HG +IR+G S + +   N L++ Y K G L  A  +F  +   D++SWNSLI+G  
Sbjct: 33  GRAVHGQIIRTGAS-TCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYS 91

Query: 223 NSG---YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
            +G        +  F  MR     P+ YT++ +  A + L++   G+Q  AL VK+    
Sbjct: 92  QNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFG 151

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V ++ + ++ K   +ED +++F  +   +    + M+S Y   G  E A+++F L L
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211

Query: 340 R--EDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           R  E+   +++  + VLSS+     V  G Q H + IK+G      ++++L+ MY+K  S
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++ + ++F     R+ ++W+ ++ G +QNG + E + +F  +   G+ P   T+  VL A
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHY---ACIIDLLCQAGQLGKA 502
           C+   ++++G  + S + +    +  E H      ++D+  +AG L  A
Sbjct: 332 CSDICYLEEGKQLHSFLLK----LGFERHLFATTALVDMYAKAGCLADA 376



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 36/292 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C      +  K +H  L KLGF  H +     +D+Y++ G   D  + FD      
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFD------ 381

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                 CL+                   E DV  W S+ISGY     ++ AL ++ +M+ 
Sbjct: 382 ------CLQ-------------------ERDVALWTSLISGYVQNSDNEEALILYRRMKT 416

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  T + +L   SS      GKQ+HG  I+ G  L  V +G++L  MY K G L 
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGL-EVPIGSALSTMYSKCGSLE 475

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               VF      D++SWN++ISG  ++G G+ AL+ F  M   G  PD+ T   +I+AC+
Sbjct: 476 DGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
               +++G   F  +S ++G        +  +DL S+  +L+++    E  +
Sbjct: 536 HKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESAN 587



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 21/250 (8%)

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
           +P   T+   +   ++ RNL  G+ V    ++ G  +     +  ++ ++KC +L  +  
Sbjct: 11  NPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHS 70

Query: 303 LFEQLDRWDYAVINVMISTYGRYG---FGEVALELFQLMLREDIRPTEFTLSCVL---SS 356
           +F  +   D    N +I+ Y + G        ++LF+ M  +DI P  +TL+ +    SS
Sbjct: 71  IFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESS 130

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
           +    V  G Q H++ +K     +  V +SL+ MY K G ++   ++F  + +R+  +W+
Sbjct: 131 LQSSTV--GRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWS 188

Query: 417 TIMMGLTQNGRAAETLDVFEELL---EEGLPPDRITLAAV--LLACNYGGF--------V 463
           T++ G    GR  E + VF   L   EEG   D +  A +  L A  Y G         +
Sbjct: 189 TMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITI 248

Query: 464 DKGMLVFSAM 473
             G+L F A+
Sbjct: 249 KNGLLGFVAL 258



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 11/190 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +  K +HGH  K GF     +G+    +YS+ G+ +D   +F   P 
Sbjct: 427 ASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPN 486

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           K+ +SWN  + GL  +   D AL++F+E+     EPD V++ ++IS  +  G+ +     
Sbjct: 487 KDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFY 546

Query: 135 FSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLGNSLIDM 189
           F+ M  Q G+ P    ++ ++  +S A   K+    I  + I  GL L  ++L  S    
Sbjct: 547 FNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILL--SACKN 604

Query: 190 YGKLGVLYYA 199
           +GK  +  YA
Sbjct: 605 HGKCELGVYA 614


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 325/616 (52%), Gaps = 37/616 (6%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +++ S LI +    KS    + +H ++ K GF ++++LG++ +D                
Sbjct: 1   MNFYSSLIAQSAHTKSLTTLRAVHTNVIKSGF-SYSFLGHKLID---------------- 43

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                          G +K  +L  A K+FDE+P   +V+WNSMIS + S G S  A+E 
Sbjct: 44  ---------------GYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEF 88

Query: 135 FSKMQLQGVRPSGFTFSIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +  M ++GV P  +TFS +    S +    HG++ HG  +  GL + +  + ++L+DMY 
Sbjct: 89  YGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYA 148

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +  A  VF  + E D++ + +LI G    G    AL  F  M   G  P+EYT++ 
Sbjct: 149 KFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLAC 208

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++  C  L +L  G+ +  L VK G  S     ++ + ++S+CN +EDS+++F QLD  +
Sbjct: 209 ILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYAN 268

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
                  +    + G  EVA+ +F+ M+R  I P  FTLS +L +   +  +E G Q H+
Sbjct: 269 QVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHA 328

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + +K G D N    ++L+ +Y K G++D +  +F  L + D+V+ N+++    QNG   E
Sbjct: 329 ITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHE 388

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L++FE L   GL P+ +T  ++LLACN  G V++G  +F++++  + +    +H+ C+I
Sbjct: 389 ALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMI 448

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL ++ +L +A  +   +   P   +W ++L +  I+G+V++ E V  ++++L      
Sbjct: 449 DLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGG 507

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            + LLT  YA  G+W  ++ +K  +R   + K    SW+ +   ++TF AG+L H    +
Sbjct: 508 THILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLE 567

Query: 611 IYLVLRLLTWEMEDEG 626
           I+ +L  L  +++  G
Sbjct: 568 IFEMLHGLMKKVKTLG 583


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/632 (30%), Positives = 331/632 (52%), Gaps = 28/632 (4%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           +S Y + + +N+  L+   ++ D      SF FA         LG  A   +G R L ++
Sbjct: 170 ISGYARNS-LNEEVLTLFMRMQDEGTQPNSFTFAAA-------LGVLAEEGVGGRGLQVH 221

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           +    +     L   IP  N +     +   LK  N+  A  +FD+     VV+WNSMIS
Sbjct: 222 TVVVKNG----LDKTIPVSNSL-----INLYLKCGNVRKARILFDKTEVKSVVTWNSMIS 272

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSL 177
           GYA+ G    AL MF  M+L  VR S  +F+ ++   + +      +Q+H S+++ G   
Sbjct: 273 GYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVF 332

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYS 236
              +   +L+  Y K   +  A  +F     L +++SW ++ISG   +   E A+  F  
Sbjct: 333 DQNIR-TALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M+  G  P+E+T S+++ A   +       +V A  VK  +  +S V +A +D + K  +
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVI----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGK 447

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS- 355
           ++++ ++F  +D  D    + M++ Y + G  E A+++F  + +  ++P EFT S +L+ 
Sbjct: 448 VDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNV 507

Query: 356 -SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
            +     +  G QFH  AIKS  DS+  V+S+L+ MYAK G I+S+ E+F +  ++DLVS
Sbjct: 508 CAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVS 567

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           WN+++ G  Q+G+A + LDVF+E+ +  +  D +T   V  AC + G V++G   F  M 
Sbjct: 568 WNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMV 627

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
            +  + P +EH +C++DL  +AGQL KA+ +   MP   G +IW +IL A  ++   +L 
Sbjct: 628 RDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELG 687

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
              AE+++ +       Y LL+  YA  G W+   +V+K+M +  + K  G SWI +KN+
Sbjct: 688 RLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNK 747

Query: 595 IYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            Y F AG+  H    +IY+ L  L+  ++D G
Sbjct: 748 TYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLG 779



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 251/536 (46%), Gaps = 83/536 (15%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V K S + C +L           F + +H    K GF     +G   +D Y +     D 
Sbjct: 103 VLKVSATLCDEL-----------FGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDG 151

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
             +FDE+ ++N ++W                                ++ISGYA    ++
Sbjct: 152 RNVFDEMKERNVVTW-------------------------------TTLISGYARNSLNE 180

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSL 186
             L +F +MQ +G +P+ FTF+  L  ++       G Q+H  ++++GL    + + NSL
Sbjct: 181 EVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD-KTIPVSNSL 239

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I++Y K G +  A  +F   E   +++WNS+ISG   +G    AL  FYSMR +     E
Sbjct: 240 INLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSE 299

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            + + +I  C  L+ L   +Q+    VK GF+ +  + +A +  +SKC  + D++RLF++
Sbjct: 300 SSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKE 359

Query: 307 LDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
                  V    MIS + +    E A+ LF  M R+ +RP EFT S +L+++P I P   
Sbjct: 360 TGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP--- 416

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
            S+ H+  +K+ ++ ++ V ++L++ Y K G +D + ++F  +D +D+V+W+ ++ G  Q
Sbjct: 417 -SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLAC-----------NYGGF-----VDKGML 468
            G     + +F EL + G+ P+  T +++L  C            + GF     +D  + 
Sbjct: 476 AGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLC 535

Query: 469 VFSAMKEEYG----VMPGEE-----------HYACIIDLLCQAGQLGKAIDITSTM 509
           V SA+   Y     +   EE            +  +I    Q GQ  KA+D+   M
Sbjct: 536 VSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 591



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 175/372 (47%), Gaps = 6/372 (1%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G   S  L  A  +FD+ P+ D  S+ S++ G++  G +  A  +F  +Q  G+      
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +L   ++ C    G+Q+H   I+ G  L +V +G SL+D Y K         VF  M
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGF-LDDVSVGTSLVDTYMKGSNFKDGRNVFDEM 158

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +E ++++W +LISG   +   E  L  F  M+  G  P+ +T +  +    +     +G 
Sbjct: 159 KERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGL 218

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           QV  + VK G      V ++ I+L+ KC  +  +  LF++ +       N MIS Y   G
Sbjct: 219 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 278

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL +F  M    +R +E + + ++     +  +    Q H   +K GF  +  + +
Sbjct: 279 LDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRT 338

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +LM  Y+K  ++  +  +F +     ++VSW  ++ G  QN    E + +F E+  +G+ 
Sbjct: 339 ALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVR 398

Query: 445 PDRITLAAVLLA 456
           P+  T + +L A
Sbjct: 399 PNEFTYSVILTA 410


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/601 (30%), Positives = 316/601 (52%), Gaps = 34/601 (5%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +  Y R G  +    LFDE+P+++ +SWN+ ++G +++ NL  A ++F+ +PE DV 
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQG-----------VRPSGFTFSILL-------S 155
           SWN+++SGYA  G  D A  +F +M  +            V+ S    + +L       +
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA 213

Query: 156 TVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            VS  C         K +        + + +VV  N++I  Y + G +  A  +F     
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPV 273

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+ +W +++SG   +   E A + F  M       +E + + ++    +   ++  K++
Sbjct: 274 HDVFTWTAMVSGYIQNRMVEEARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAKEL 329

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
           F     V    N    +  I  +++C ++ ++  LF+++ + D      MI+ Y + G  
Sbjct: 330 F----DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 385

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             AL LF LM RE  R    + S  LS+   +  +E G Q H   +K G+++   V ++L
Sbjct: 386 YEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNAL 445

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY K GSI+ + ++F ++  +D+VSWNT++ G +++G   E L  FE +  EGL PD 
Sbjct: 446 LLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDD 505

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
            T+ AVL AC++ G VDKG   F  M ++YGV P  +HYAC++DLL +AG L +A ++  
Sbjct: 506 ATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMK 565

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MPF+P  +IW ++L AS ++G+ +L E  A+++  ++  +   Y LL+  YA  GRW  
Sbjct: 566 NMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGD 625

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
           + +++  MR  G+ KV G SWI I+N+ +TF+ G+  H    +I+  L  L   M+  G 
Sbjct: 626 VGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGY 685

Query: 628 V 628
           V
Sbjct: 686 V 686



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 195/457 (42%), Gaps = 64/457 (14%)

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG 168
           + D+  WN  IS Y   G    AL +F +M     R S  +++ ++S      +G+    
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMP----RWSSVSYNAMISGYLR--NGEFELA 109

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            M+   +   ++V  N +I  Y +   L  A  +F  M E D+ SWN+++SG   +G  +
Sbjct: 110 RMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVD 169

Query: 229 LALDQFYSMRYSGYSPDEYTIS--IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            A   F  M      P++  +S   +++A  +   L++   +F        +S + +L  
Sbjct: 170 DARRVFDRM------PEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGG 223

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
               F K  ++ ++ + F+ +   D    N +I+ Y + G  + A +LF      D+   
Sbjct: 224 ----FVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV--- 276

Query: 347 EFTLSCVLSS-IPIPPVEHGSQ-FHSMAIKSGFDSNAVVA-------------------- 384
            FT + ++S  I    VE   + F  M  ++    NA++A                    
Sbjct: 277 -FTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPC 335

Query: 385 ------SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
                 ++++  YA+ G I  +  +F K+ KRD VSW  ++ G +Q+G + E L +F  +
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG-VMPGEEHYACIID-----L 492
             EG   +R + ++ L  C         ++     K+ +G ++ G     C +      +
Sbjct: 396 EREGGRLNRSSFSSALSTC-------ADVVALELGKQLHGRLVKGGYETGCFVGNALLLM 448

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            C+ G + +A D+   M  +   S W +++   + +G
Sbjct: 449 YCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHG 484



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 41/237 (17%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
             +N++S S     +  C    + +  K +HG L K G+    ++GN  L +Y + G+ +
Sbjct: 400 GRLNRSSFS---SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 456

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           +   LF E+  K+ +SW                               N+MI+GY+  G+
Sbjct: 457 EANDLFKEMAGKDIVSW-------------------------------NTMIAGYSRHGF 485

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGN 184
            + AL  F  M+ +G++P   T   +LS  S       G+Q   +M +      N     
Sbjct: 486 GEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYA 545

Query: 185 SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
            ++D+ G+ G+L  A  +  NM  E D   W +L+       N+   E A D+ ++M
Sbjct: 546 CMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 602



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           S T+   K    D+  WN  +    + GR +E L VF+ +         ++  A++    
Sbjct: 46  SQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWS----SVSYNAMISGYL 101

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
             G  +   ++F  M E   V      +  +I    +   LGKA ++   MP +  CS W
Sbjct: 102 RNGEFELARMLFDEMPERDLV-----SWNVMIKGYVRNRNLGKARELFERMPERDVCS-W 155

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
            +IL   A  G V     V +RM +    + + ++ L  AY    + E
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPE---KNDVSWNALLSAYVQNSKLE 200


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 207/667 (31%), Positives = 330/667 (49%), Gaps = 97/667 (14%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           Y  +L+  C +       +  +G   K GF ++   + N  L +YSR G       LFDE
Sbjct: 8   YYVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDE 67

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +P++N  SWN  + G + S +  T+L+ FD +PE D  SWN +ISG+A  G    A  +F
Sbjct: 68  MPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLF 127

Query: 136 SKMQ----------LQGVRPSGFT-----------FS---ILLSTVSSAC-------HGK 164
             M           L G   +G++           FS   I L+TV  AC        GK
Sbjct: 128 DAMPEKDVVTLNSLLHGYILNGYSEEALRLFKELKFSADAITLTTVLKACAELEALKRGK 187

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD-------------- 210
           QIH  ++  G+   +  + +SL+++Y K G L  A  +   + E D              
Sbjct: 188 QIHAQILIGGVECDSK-MNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANC 246

Query: 211 -----------------IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
                            +I WNS+ISG   +     AL  F  MR   +  D  T++ VI
Sbjct: 247 GRVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEMRNETWE-DSRTLAAVI 305

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           NAC  L  L+ GKQ+   + K G + + +V S  +D++SKC    ++ +LF +++ +D  
Sbjct: 306 NACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTI 365

Query: 314 VINVMISTY---GRY-----------------------GFGE-----VALELFQLMLRED 342
           ++N MI  Y   GR                        GF +       LE F  M + D
Sbjct: 366 LLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLD 425

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   E +LS V+S+   I  +  G Q  + A   G DS+ +V+SSL+++Y K GS+++  
Sbjct: 426 LPTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENGR 485

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  + K D V WN+++ G   NG   E +D+F+++   G+ P +IT   VL ACNY G
Sbjct: 486 RVFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCG 545

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            V++G L+F AMK ++G +P +EH++C++DLL +AG + +AID+   MPF    S+W S+
Sbjct: 546 LVEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSV 605

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           LR     G   + + VAE++++L+  + + Y  L+  +A  G WE+   V+K+MR+N ++
Sbjct: 606 LRGCVANGYKAMGKKVAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVS 665

Query: 582 KVTGCSW 588
           K  G SW
Sbjct: 666 KNPGSSW 672


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 284/517 (54%), Gaps = 8/517 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A+KVFDEI EPDVVSW   I G AS G+   A+E+F  +   G+  + +T   +LS +  
Sbjct: 28  AIKVFDEIAEPDVVSWTERI-GTASDGHE--AVELFRIVLSLGLDVNEYTLINVLSMIGG 84

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 GKQI     ++G     V + N+L+ MYGK G +  A  VF NM   D +SWNS
Sbjct: 85  VKFLNAGKQIQALCHKTGY-FQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNS 143

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           LIS C  +G+   AL+ FY MR     P  +T++ ++ A +   N  +  Q+ +L VK G
Sbjct: 144 LISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCG 203

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F+ +  ++S  I  + +CN +++S R+F ++D+ +   +N MI+T+ R G+   AL L+Q
Sbjct: 204 FMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQ 263

Query: 337 LMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            +     +    T S +L +   I  ++ G   HS+ +K+GFD ++ V SS++++Y K G
Sbjct: 264 TIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCG 323

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           SI  + + F       L +WN +MMG   +G   E  D+F ++ + G+ PD IT   VL 
Sbjct: 324 SIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLS 383

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           +C +GG V +      +M E +G++P  EHYAC+IDLL + G L  A      MP QP  
Sbjct: 384 SCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDV 443

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            IW+ +L A  I+G V+L    A +++++   +   Y LL+  YA  G W A+ R++K M
Sbjct: 444 HIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYILLSNLYASVGMWNAVGRLRKEM 503

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           ++  + K  G SWI +  + +TF   +  H   ++IY
Sbjct: 504 KEKNLRKEPGSSWIQVGRKSHTFFVNDTSHPQSKEIY 540



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 159/326 (48%), Gaps = 5/326 (1%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           S++   N+++ MY + G    A  VF  + E D++SW   I     +  G  A++ F  +
Sbjct: 7   SSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIG---TASDGHEAVELFRIV 63

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
              G   +EYT+  V++    ++ L+ GKQ+ AL  K G+     V +A + ++ KC ++
Sbjct: 64  LSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQI 123

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            D+ R+F  +   D    N +IS     GF   ALE+F  M    ++PT  TL+ +L ++
Sbjct: 124 CDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAV 183

Query: 358 PIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
                 +   Q HS+ +K GF  +  + S L+  Y +  S+D S  +F ++DK +LV  N
Sbjct: 184 SNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLN 243

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           T++    + G   + L +++ +       D  T + +L AC+    +  G  V S + + 
Sbjct: 244 TMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKT 303

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKA 502
            G        + +ID+ C+ G +G+A
Sbjct: 304 -GFDQDSFVESSVIDIYCKCGSIGQA 328



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 41/219 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +       + +H  + K GF+  +++ +  +D+Y + G+             
Sbjct: 278 SIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGS------------- 324

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +  A K F       + +WN+M+ GYA  G      ++F+KM
Sbjct: 325 ------------------IGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKM 366

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG------KQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
              G+ P   T+   L  +SS CHG      +    SM      + ++     +ID+ G+
Sbjct: 367 SQFGIEPDEITY---LGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGR 423

Query: 193 LGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           +G+L  A     +M  + D+  W  L+S C   G+ EL 
Sbjct: 424 VGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELG 462


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/619 (29%), Positives = 322/619 (52%), Gaps = 56/619 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         K IH H+ + GF +   +GN  + +Y + G                
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCG---------------- 247

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          ++  A  +FD++P+ D +SWN+MISGY   G     LE+FS M+ 
Sbjct: 248 ---------------DISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRE 292

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             V P   T    ++TV+SAC        G+ +HG +++S     ++ + NSLI MY  L
Sbjct: 293 LSVDPDLIT----MTTVASACELLDNERLGRGVHGYVVKSEFG-GDISMNNSLIQMYSSL 347

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  VF  ME  D++SW ++I+   +      A++ +  M   G  PDE T+  V+
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD----- 308
           +AC  + +LD G ++  +++K G +S+ IV ++ ID++SKC  +++++ +F  +      
Sbjct: 408 SACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVV 467

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
            W   ++ + I+             LF   ++E ++P   TL  VLS+   I  +  G +
Sbjct: 468 SWTSLILGLRINNRSFEAL------LFFRQMKESMKPNSVTLISVLSACARIGALMRGKE 521

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H+ A+++G   +  + +++++MY + G    +   F    K+D+ +WN ++ G  Q G+
Sbjct: 522 IHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQ 580

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           A   +++F+++LE  + PD IT  ++L AC+  G V +G+  F+ MK +Y + P  +HYA
Sbjct: 581 AKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYA 640

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C++D+L +AGQL  A D    MP +P  +IW ++L A  I+ +V+L E  A+R+ +    
Sbjct: 641 CVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNK 700

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           S   Y LL   YA  G W+ + +V+ +MR+ G++   GCSW+ IK +++ F +G+  H  
Sbjct: 701 SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQ 760

Query: 608 GQKIYLVLRLLTWEMEDEG 626
            ++I  VL     +M++ G
Sbjct: 761 SKEINGVLDGFCSKMKENG 779



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/488 (31%), Positives = 263/488 (53%), Gaps = 18/488 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L   ++  NL  A  VF ++ E DV SWN ++ GYA  G  D AL ++ +M    +R
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ +TF  +L T   VS    GK+IH  +IR G   S+V +GN+LI MY K G +  A  
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE-SDVDVGNALITMYVKCGDISNARM 254

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M + D ISWN++ISG F +G G   L+ F  MR     PD  T++ V +AC  L N
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G+ V    VK  F  +  + ++ I ++S   RLE++  +F +++  D      MI++
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
              +     A+E +++M  E I P E TL  VLS+   I  ++ G + H +AIK+G  S+
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            +V++SL++MY+K   +D++ E+F  +  +++VSW ++++GL  N R+ E L  F + ++
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ-MK 493

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEY---GVMPGEEHYACIIDLLCQA 496
           E + P+ +TL +VL AC   G + +G  + + A++      G +P       I+D+  + 
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN-----AILDMYVRC 548

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLL 555
           G+   A++  ++   +   + W  +L   A  G  KL   + ++M++L++ P  + +  L
Sbjct: 549 GRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISL 606

Query: 556 TQAYAMRG 563
             A +  G
Sbjct: 607 LCACSKSG 614



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 1/299 (0%)

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
           ++ S  S   V LGN+L+ M+ + G L  A+ VF  M E D+ SWN L+ G   +G  + 
Sbjct: 122 LVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDE 181

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL+ ++ M ++   P+ YT   V+  C  + ++ +GK++ A  ++ GF S+  V +A I 
Sbjct: 182 ALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALIT 241

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ KC  + ++  LF+++ + D    N MIS Y   G G   LELF +M    + P   T
Sbjct: 242 MYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLIT 301

Query: 350 LSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           ++ V S+  +   E  G   H   +KS F  +  + +SL++MY+  G ++ +  +F +++
Sbjct: 302 MTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRME 361

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
            +D+VSW  ++  L  +    + ++ ++ +  EG+ PD ITL +VL AC   G +D G+
Sbjct: 362 SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/619 (29%), Positives = 322/619 (52%), Gaps = 56/619 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         K IH H+ + GF +   +GN  + +Y + G                
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCG---------------- 247

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          ++  A  +FD++P+ D +SWN+MISGY   G     LE+FS M+ 
Sbjct: 248 ---------------DISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRE 292

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             V P   T    ++TV+SAC        G+ +HG +++S     ++ + NSLI MY  L
Sbjct: 293 LSVDPDLIT----MTTVASACELLDNERLGRGVHGYVVKSEFG-GDISMNNSLIQMYSSL 347

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  VF  ME  D++SW ++I+   +      A++ +  M   G  PDE T+  V+
Sbjct: 348 GRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD----- 308
           +AC  + +LD G ++  +++K G +S+ IV ++ ID++SKC  +++++ +F  +      
Sbjct: 408 SACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVV 467

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
            W   ++ + I+             LF   ++E ++P   TL  VLS+   I  +  G +
Sbjct: 468 SWTSLILGLRINNRSFEAL------LFFRQMKESMKPNSVTLISVLSACARIGALMRGKE 521

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H+ A+++G   +  + +++++MY + G    +   F    K+D+ +WN ++ G  Q G+
Sbjct: 522 IHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQ 580

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           A   +++F+++LE  + PD IT  ++L AC+  G V +G+  F+ MK +Y + P  +HYA
Sbjct: 581 AKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYA 640

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C++D+L +AGQL  A D    MP +P  +IW ++L A  I+ +V+L E  A+R+ +    
Sbjct: 641 CVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNK 700

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           S   Y LL   YA  G W+ + +V+ +MR+ G++   GCSW+ IK +++ F +G+  H  
Sbjct: 701 SVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQ 760

Query: 608 GQKIYLVLRLLTWEMEDEG 626
            ++I  VL     +M++ G
Sbjct: 761 SKEINGVLDGFCSKMKENG 779



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 154/488 (31%), Positives = 263/488 (53%), Gaps = 18/488 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L   ++  NL  A  VF ++ E DV SWN ++ GYA  G  D AL ++ +M    +R
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ +TF  +L T   VS    GK+IH  +IR G   S+V +GN+LI MY K G +  A  
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE-SDVDVGNALITMYVKCGDISNARM 254

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M + D ISWN++ISG F +G G   L+ F  MR     PD  T++ V +AC  L N
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G+ V    VK  F  +  + ++ I ++S   RLE++  +F +++  D      MI++
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
              +     A+E +++M  E I P E TL  VLS+   I  ++ G + H +AIK+G  S+
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            +V++SL++MY+K   +D++ E+F  +  +++VSW ++++GL  N R+ E L  F + ++
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQ-MK 493

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEY---GVMPGEEHYACIIDLLCQA 496
           E + P+ +TL +VL AC   G + +G  + + A++      G +P       I+D+  + 
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN-----AILDMYVRC 548

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLL 555
           G+   A++  ++   +   + W  +L   A  G  KL   + ++M++L++ P  + +  L
Sbjct: 549 GRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISL 606

Query: 556 TQAYAMRG 563
             A +  G
Sbjct: 607 LCACSKSG 614



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 1/299 (0%)

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
           ++ S  S   V LGN+L+ M+ + G L  A+ VF  M E D+ SWN L+ G   +G  + 
Sbjct: 122 LVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDE 181

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL+ ++ M ++   P+ YT   V+  C  + ++ +GK++ A  ++ GF S+  V +A I 
Sbjct: 182 ALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALIT 241

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ KC  + ++  LF+++ + D    N MIS Y   G G   LELF +M    + P   T
Sbjct: 242 MYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLIT 301

Query: 350 LSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           ++ V S+  +   E  G   H   +KS F  +  + +SL++MY+  G ++ +  +F +++
Sbjct: 302 MTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRME 361

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
            +D+VSW  ++  L  +    + ++ ++ +  EG+ PD ITL +VL AC   G +D G+
Sbjct: 362 SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI 420


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 191/600 (31%), Positives = 320/600 (53%), Gaps = 47/600 (7%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LFD++P+++  SWN+ L G +++  L  A K+FD +P+ DVVSWN+M+SGYA  G+ D A
Sbjct: 99  LFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEA 158

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            E+F+KM  +    +  +++ LL+      +G+      +    S   ++  N L+  Y 
Sbjct: 159 REVFNKMPHR----NSISWNGLLAAY--VHNGRLKEARRLFESQSNWELISWNCLMGGYV 212

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP--DEYTI 249
           K  +L  A  +F  M   D+ISWN++ISG    G      D   + R    SP  D +T 
Sbjct: 213 KRNMLGDARQLFDRMPVRDVISWNTMISGYAQVG------DLSQAKRLFNESPIRDVFTW 266

Query: 250 SIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVL------------------------ 284
           + +++   +   +D+ ++ F  + VK     N+++                         
Sbjct: 267 TAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS 326

Query: 285 --SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
             +  I  + +   +  + +LF+ + + D      +IS Y + G  E AL +F  M R+ 
Sbjct: 327 SWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
                 T SC LS+   I  +E G Q H   +K+GF++   V ++L+ MY K GS D + 
Sbjct: 387 ESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAN 446

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           ++F  ++++D+VSWNT++ G  ++G   + L +FE + + G+ PD IT+  VL AC++ G
Sbjct: 447 DVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   F +M  +Y V P  +HY C+IDLL +AG+L +A ++   MPF PG + W ++
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L AS I+G+ +L E  AE +  ++  +   Y LL+  YA  GRW  + +++  MR+ G+ 
Sbjct: 567 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQ 626

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL---DVE 638
           KVTG SW+ ++N+I+TF+ G+  H    +IY  L  L  +M  EG  Y+   KL   DVE
Sbjct: 627 KVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREG--YVSSTKLVLHDVE 684



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 177/342 (51%), Gaps = 8/342 (2%)

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           D  QLFD +P ++ ISWN  + G  +  +L  A ++F+E P  DV +W +M+SGY   G 
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
            D A + F +M ++    +  +++ +L+      + K +    +   +   N+   N++I
Sbjct: 279 VDEARKYFDEMPVK----NEISYNAMLAGYVQ--YKKMVIAGELFEAMPCRNISSWNTMI 332

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
             YG+ G +  A  +F  M + D +SW ++ISG   +G+ E AL+ F  M+  G S +  
Sbjct: 333 TGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRS 392

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S  ++ C  +  L+ GKQV    VK GF +   V +A + ++ KC   +++  +FE +
Sbjct: 393 TFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGI 452

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS 366
           +  D    N MI+ Y R+GFG  AL LF+ M +  ++P E T+  VLS+      ++ G+
Sbjct: 453 EEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGT 512

Query: 367 Q-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           + F+SM         +   + ++++  + G ++ +  +   +
Sbjct: 513 EYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM 554



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/532 (22%), Positives = 229/532 (43%), Gaps = 56/532 (10%)

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C+  N   R   +S N  +   V  +  +PD+V+WN  IS +   G+ D AL +F+ M  
Sbjct: 17  CLCTNNYYRSKRRSTNSYSPSSV--KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMP- 73

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
              R S  +++ ++S           + +   M    L   NV+L   + +   +LG  +
Sbjct: 74  ---RRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNR--RLGEAH 128

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI--VINA 255
             F +   M + D++SWN+++SG   +G+ + A + F  M      P   +IS   ++ A
Sbjct: 129 KLFDL---MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM------PHRNSISWNGLLAA 179

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
                 L + +++F        +S + ++   +    K N L D+ +LF+++   D    
Sbjct: 180 YVHNGRLKEARRLFESQSNWELISWNCLMGGYV----KRNMLGDARQLFDRMPVRDVISW 235

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAI 373
           N MIS Y + G    A  LF      D+    FT + ++S      +  E    F  M +
Sbjct: 236 NTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPV 291

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+    NA++A      Y +   +  + E+F  +  R++ SWNT++ G  QNG  A+   
Sbjct: 292 KNEISYNAMLAG-----YVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARK 346

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F+ + +     D ++ AA++      G  ++ + +F  MK + G       ++C +   
Sbjct: 347 LFDMMPQR----DCVSWAAIISGYAQNGHYEEALNMFVEMKRD-GESSNRSTFSCALSTC 401

Query: 494 CQ--AGQLGKAID-ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
               A +LGK +        F+ GC +  ++L    +Y     T+   +    ++    +
Sbjct: 402 ADIAALELGKQVHGQVVKAGFETGCFVGNALL---GMYFKCGSTDEANDVFEGIEEKDVV 458

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK--------VTGCSWIGIKNR 594
            ++ +   YA  G     + + + M+K G+          ++ CS  G+ +R
Sbjct: 459 SWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDR 510



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 38/220 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K +HG + K GF    ++GN  L +Y + G++D+   +F+ I +K+ +SW
Sbjct: 401 CADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSW 460

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          N+MI+GYA  G+   AL +F  M+  GV+
Sbjct: 461 -------------------------------NTMIAGYARHGFGRQALVLFESMKKAGVK 489

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +LS  S +     G +   SM R             +ID+ G+ G L  A  
Sbjct: 490 PDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAEN 549

Query: 202 VFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
           +  NM  +    SW +L+       N+  GE A +  + M
Sbjct: 550 LMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKM 589


>gi|225459473|ref|XP_002284396.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Vitis vinifera]
          Length = 690

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 193/587 (32%), Positives = 305/587 (51%), Gaps = 17/587 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +  K IHG +F+      T L N  LD+Y + G+     ++FD+I  
Sbjct: 109 SAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILC 168

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +  SWN  + G  K   ++ A+ +F ++PEPD VSWNS+I+G+  C  S  AL     M
Sbjct: 169 PSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFG-CKESLGALRFVCMM 227

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             +G++  GFTFS  L T    C       KQIH  + +SG   S     ++L+D Y   
Sbjct: 228 HRKGLKLDGFTFSCALKTC--GCFQLLVMVKQIHCYVNKSGFG-SCCFTASALVDSYSNC 284

Query: 194 GVLYYAFGVF-----LNMEELDIIS-WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
             L  A  +F      +   LD +  WNS++SG   +     A++    +   G   D +
Sbjct: 285 NELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGAHVDSF 344

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T    +  C  L+N   G QV  L+V  G+  + +V S  IDL++   +++D++RLF +L
Sbjct: 345 TFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDGKIKDALRLFYRL 404

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              D  V + +IS   + G   +   LF+ M+  DI   +F +S VL +   +  +  G 
Sbjct: 405 PEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGK 464

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q HS  +KSG++S  +  +SL+++YAK G I+    +F    +RD V +  I+MG  QNG
Sbjct: 465 QVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNG 524

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           RA E +  F+E++E GL P+ IT   VL AC + G V++   +F  MK EY + P  EHY
Sbjct: 525 RAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHY 584

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            CI++LL QAG   +A ++ + MPF+P  +IW S+L A   +   +L   +AER++    
Sbjct: 585 YCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLP 644

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
             P     L+  YA    W+   ++++V++K G+ K  G SWI IK+
Sbjct: 645 EDPSILVTLSNVYATLEMWDDSRKMREVIKKVGM-KEAGKSWIQIKS 690



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 209/480 (43%), Gaps = 75/480 (15%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I +C  F++F   +++H H+ KLG     +  N  L +Y       D  +LFDE  ++N
Sbjct: 9   VIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLERN 68

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-Q 139
             +W                                +MIS Y+S G  D AL+ + +M +
Sbjct: 69  VATW-------------------------------TTMISAYSSSGRPDTALKFYVQMLE 97

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM------- 189
            +   P+GF +S +L     V     GK IHG + R+ L   + VL N+L+DM       
Sbjct: 98  SKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGF-DTVLMNTLLDMYVKCGSL 156

Query: 190 ------------------------YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
                                   YGK G++  A  +F  M E D +SWNS+I+G F   
Sbjct: 157 SSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAG-FGCK 215

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
               AL     M   G   D +T S  +  C   + L   KQ+     K GF S     S
Sbjct: 216 ESLGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFGSCCFTAS 275

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVI------NVMISTYGRYGFGEVALELFQLML 339
           A +D +S CN L++++++F++      +++      N M+S Y        A+ L   + 
Sbjct: 276 ALVDSYSNCNELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIH 335

Query: 340 REDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                   FT    L   I +     G Q   +A+ SG++ + VV S L+++YA  G I 
Sbjct: 336 SLGAHVDSFTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDGKIK 395

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F +L ++D+V W++++   T+ G  +    +F +++   +  D+  +++VL AC+
Sbjct: 396 DALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACS 455



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 190/430 (44%), Gaps = 55/430 (12%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           HG+ +H  +I+ G+  ++V   N+L+ MY  + +L  A  +F    E ++ +W ++IS  
Sbjct: 21  HGRSLHAHIIKLGV-FNDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAY 79

Query: 222 FNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
            +SG  + AL  +  M  S   +P+ +  S V+ AC  + +L+ GK +     +     +
Sbjct: 80  SSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFD 139

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ---- 336
           +++++  +D++ KC  L  + ++F+ +        N MIS YG+ G  E A+ LF     
Sbjct: 140 TVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPE 199

Query: 337 --------------------------LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
                                     +M R+ ++   FT SC L +      +    Q H
Sbjct: 200 PDTVSWNSIIAGFGCKESLGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIH 259

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK--------LDKRDLVSWNTIMMG 421
               KSGF S    AS+L++ Y+    +D + ++F +        LD   L  WN+++ G
Sbjct: 260 CYVNKSGFGSCCFTASALVDSYSNCNELDEAIKMFDEYSCCSASILDCLPL--WNSMLSG 317

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC----NYG-GFVDKGMLVFSAMKEE 476
              N + +  +++  ++   G   D  T  + L  C    N+  G   +G+ V S  + +
Sbjct: 318 YVVNEQNSAAINLVSQIHSLGAHVDSFTFGSALKVCINLQNFRLGLQVQGLAVTSGYELD 377

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y V       + +IDL    G++  A+ +   +P +    +W S++      G   L  +
Sbjct: 378 YVVG------SILIDLYANDGKIKDALRLFYRLP-EKDIVVWSSLISWCTKMGLNSLVFS 430

Query: 537 VAERMMDLQL 546
           +   M++L +
Sbjct: 431 LFRDMVNLDI 440



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 8/248 (3%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D + I  VI  C + R    G+ + A  +K+G  ++    +  + ++   + L+D+ RLF
Sbjct: 2   DLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPV 362
           ++    + A    MIS Y   G  + AL+ + Q++  +   P  F  S VL +   +  +
Sbjct: 62  DETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDL 121

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           E G   H    ++    + V+ ++L++MY K GS+ S+ ++F  +      SWNT++ G 
Sbjct: 122 ESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGY 181

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            + G   E +++F ++ E    PD ++  +++    +G     G L F  M    G+   
Sbjct: 182 GKEGLMEEAVNLFYQMPE----PDTVSWNSIIAG--FGCKESLGALRFVCMMHRKGLKLD 235

Query: 483 EEHYACII 490
              ++C +
Sbjct: 236 GFTFSCAL 243



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 93/220 (42%), Gaps = 14/220 (6%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            HG   H+  IK G  ++   A++L+ MY     +  +  +F +  +R++ +W T++   
Sbjct: 20  RHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAY 79

Query: 423 TQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGML----VFSAMKEEY 477
           + +GR    L  + ++LE +   P+    +AVL AC   G ++ G L    VF A     
Sbjct: 80  SSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFD 139

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            V+        ++D+  + G L  A  +   +   P  + W +++     YG   L E  
Sbjct: 140 TVLMNT-----LLDMYVKCGSLSSARKVFDDI-LCPSSTSWNTMISG---YGKEGLMEEA 190

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
                 +  P  + ++ +   +  +    A+  V  + RK
Sbjct: 191 VNLFYQMPEPDTVSWNSIIAGFGCKESLGALRFVCMMHRK 230


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 171/533 (32%), Positives = 293/533 (54%), Gaps = 6/533 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A K+FD+ P+PDV  WN+++  Y+  G+  +A+EM+++MQ+  V P GF+F  +L   S+
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSA 185

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G+++HG + R G   S+V + N L+ +Y K G +  A  VF  + +  I+SW S
Sbjct: 186 LPALEMGRRVHGQIFRHGFE-SDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTS 244

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +ISG   +G    AL  F  MR +   PD   +  V+ A T + +L+ GK +    +K+G
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 304

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
                 +L +   L++KC  +  +   F Q++       N MIS Y + G+ E A+ELF+
Sbjct: 305 LECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 337 LMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           LM  ++IRP   T+ S + +   I  +E           S F ++ +V +SL++ YAK G
Sbjct: 365 LMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCG 424

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S+D +  +F ++  +D+V W+ +M+G   +G+  E++ +F  + + G+ P+ +T   +L 
Sbjct: 425 SVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLT 484

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC   G V++G  +F  M++ YG+ P  +HYAC++DLL +AG L +A +    MP +PG 
Sbjct: 485 ACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGV 543

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
           S+W ++L A  I+  V L E  AER+  L   +   Y  L+  YA    W+ + +V+ +M
Sbjct: 544 SVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLM 603

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           R+ G+ K  G S I I  ++  F AG+  H   ++I+  +  L   +++ G V
Sbjct: 604 REKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFV 656



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 153/315 (48%), Gaps = 3/315 (0%)

Query: 144 RPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           +P  F  S++  ++    H  QI+  ++ +GL     ++   L++    +G +  A  +F
Sbjct: 73  KPDKFYASLIDDSIHKT-HLNQIYAKLLVTGLQYGGFLIAK-LVNKASNIGEVSCARKLF 130

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
               + D+  WN+++      G+   A++ +  M+ +  SPD ++   V+ AC+ L  L+
Sbjct: 131 DKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALE 190

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G++V     + GF S+  V +  + L++KC  +  +  +F +L          +IS Y 
Sbjct: 191 MGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYA 250

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAV 382
           + G    AL +F  M + ++RP    L  VL +   +  +EHG   H   IK G +    
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           +  SL  +YAK G +  +   F +++   L+ WN ++ G  +NG A E +++F  +  + 
Sbjct: 311 LLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKN 370

Query: 443 LPPDRITLAAVLLAC 457
           + PD IT+ + + AC
Sbjct: 371 IRPDSITVTSSIAAC 385



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 184/403 (45%), Gaps = 35/403 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  + +  + +HG +F+ GF +  ++ N  + LY++ G       +F  +  + 
Sbjct: 179 VLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRT 238

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQ 139
            +SW   + G  ++     AL++F E+ + +V   W +++S   +  Y+D          
Sbjct: 239 IVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRA--YTD---------- 286

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
                            V    HGK IHG +I+ GL     +L  SL  +Y K G +  A
Sbjct: 287 -----------------VEDLEHGKSIHGCVIKMGLECEFDLL-ISLTSLYAKCGHVMVA 328

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
              F  +E   +I WN++ISG   +GY E A++ F  M+     PD  T++  I AC ++
Sbjct: 329 RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +L+  + +        F ++ IV ++ ID ++KC  ++ +  +F+++   D  V + M+
Sbjct: 389 GSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMM 448

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGF 377
             YG +G G  ++ LF  M +  + P + T   +L++      VE G   FH M    G 
Sbjct: 449 VGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR-DYGI 507

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
           +      + ++++  + G +D +    + +     VS W  ++
Sbjct: 508 EPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALL 550


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 171/561 (30%), Positives = 307/561 (54%), Gaps = 39/561 (6%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L    ++ +LD A+  F+ +PE +  SW +MI+ +A CG  D A++++ ++  Q V    
Sbjct: 403 LNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA--- 459

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            T + +++  +    G+     +I   +   NVV  N++I  Y + G+L  A  +F  M 
Sbjct: 460 -TKTAMMTAYAQV--GRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMP 516

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             +  SW ++I+G   +     AL+    +  SG  P + + +  ++AC  + +++ G+ 
Sbjct: 517 VKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRV 576

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLED------SVRL------------------ 303
           + +L++K G   NS V++  I +++KC  +ED      ++R+                  
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636

Query: 304 -------FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
                  FE++ + D      +IS Y + G GEVAL+LF  ML   I+P + T++ +LS+
Sbjct: 637 LDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 696

Query: 357 I-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              +  ++ G QFH++  K GFD+   V +SL+ MY K G  D    +F ++ + DL++W
Sbjct: 697 CGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPEHDLITW 755

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
           N +++G  QNG   E + +FE++  EG+ PD+++   VL AC++ G VD+G   F++M +
Sbjct: 756 NAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQ 815

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
           +YG+MP   HY C++DLL +AG L +A  +   MP +P   IWE++L A  I+ +V+L +
Sbjct: 816 KYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQ 875

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
            VAER+  +  P    Y LL+  +A +G W+ +  ++K+M+  G+ K  G SWI +KN++
Sbjct: 876 RVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKL 935

Query: 596 YTFNAGELQHHGGQKIYLVLR 616
           + F  G+  H   ++IY  L+
Sbjct: 936 HCFVTGDRTHDQIEEIYSALK 956



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 228/476 (47%), Gaps = 81/476 (17%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y++ G  ++  ++F+ + ++N +SWN  + G +++ +L  A K+FDE+PE +V SWNS++
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVV 302

Query: 120 SGYASC--------------------------GY---SDY--ALEMFSKMQLQGVRPSGF 148
           +GY  C                          GY   SDY  A ++F KM     RP   
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQS 362

Query: 149 TFSILLSTVSSACHGKQIHGSM----IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            F ++LS + +     ++ GS+    I++G    +VV+G+++++ Y + G L  A   F 
Sbjct: 363 IFVVVLSAI-TGLDDLELIGSLRPIAIKTGYE-GDVVVGSAILNAYTRNGSLDLAMHFFE 420

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY--TISIVINACTKLRNL 262
            M E +  SW ++I+     G  + A+ Q Y        P++   T + ++ A  ++  +
Sbjct: 421 TMPERNEYSWTTMIAAFAQCGRLDDAI-QLYER-----VPEQTVATKTAMMTAYAQVGRI 474

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            K + +F   +      N +  +A I  +++   L+++  LF+++   + A    MI+ +
Sbjct: 475 QKARLIFDEILN----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGF 530

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            +      ALEL   + R    P++ + +  LS+   I  VE G   HS+AIK+G   N+
Sbjct: 531 VQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS 590

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN---------------- 425
            V + L+ MYAK G+++  + +F  +  +D VSWN+++ GL++N                
Sbjct: 591 YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR 650

Query: 426 ---------------GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
                          G     LD+F ++L  G+ P+++T+ ++L AC   G +  G
Sbjct: 651 DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG 706



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 152/287 (52%), Gaps = 6/287 (2%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    +  + IH    K G   ++Y+ N  + +Y++ G  +D   +F  I  K+ +SW
Sbjct: 565 CANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSW 624

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + GL ++  LD A  VF+++P+ DVVSW ++IS Y   G+ + AL++F  M  +G++
Sbjct: 625 NSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIK 684

Query: 145 PSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + LLS    + +   G+Q H  + + G   + + +GNSLI MY K G     F 
Sbjct: 685 PNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFD-TFLFVGNSLITMYFKCG-YEDGFC 742

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E D+I+WN+++ GC  +G G+ A+  F  M   G  PD+ +   V+ AC+    
Sbjct: 743 VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGL 802

Query: 262 LDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +D+G   F +++ K G +      +  +DL  +   L ++  L E +
Sbjct: 803 VDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENM 849



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 106/535 (19%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           K G+     +G+  L+ Y+R G+ D  +  F+ +P++N  SW   +    +   LD A++
Sbjct: 389 KTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQ 448

Query: 103 VFDEIPE-------------------------------PDVVSWNSMISGYASCGYSDYA 131
           +++ +PE                               P+VV+WN++I+GY   G    A
Sbjct: 449 LYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEA 508

Query: 132 LEMFSKMQLQ-------------------------------GVRPSGFTFSILLSTVSSA 160
            ++F KM ++                               G  PS  +F+  LS  ++ 
Sbjct: 509 KDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANI 568

Query: 161 CH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG----------------------- 194
                G+ IH   I++G   ++ V+ N LI MY K G                       
Sbjct: 569 GDVEIGRVIHSLAIKTGCQFNSYVM-NGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSL 627

Query: 195 --------VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
                   +L  A  VF  M + D++SW ++IS    +G+GE+ALD F  M   G  P++
Sbjct: 628 ISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQ 687

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T++ +++AC  L  +  G+Q  AL  K+GF +   V ++ I ++ KC   ED   +FE+
Sbjct: 688 LTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEE 746

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EH 364
           +   D    N ++    + G G+ A+++F+ M  E I P + +   VL +     +  E 
Sbjct: 747 MPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEG 806

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLT 423
            + F+SM  K G        + ++++  + G +  +  +   +  K D V W   ++G  
Sbjct: 807 WAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEA-LLGAC 865

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG--GFVDKGMLVFSAMKEE 476
           +  R  E      E L +   P   T   VLL+  +   G  DK   +   MK++
Sbjct: 866 RIHRNVELGQRVAERLFQMTKPKSATY--VLLSNLFASQGMWDKVAEIRKLMKDQ 918



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 197/428 (46%), Gaps = 44/428 (10%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           E PQ +    N  ++ L +   ++ A +VF+E+ + DVVSWNSMI+GY+  G  D A  +
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLL 224

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F     + +R    T++ILL+    A  G+      +   ++  NVV  N++I  Y + G
Sbjct: 225 FDAFVGKNIR----TWTILLT--GYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNG 278

Query: 195 VLYYAFGVFLNMEELDIISWNSLISG---CFN-----------------------SGYGE 228
            L  A  +F  M E ++ SWNS+++G   C+                        SGY  
Sbjct: 279 DLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVH 338

Query: 229 L-----ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +     A D F  M  +   PD+    +V++A T L +L+    +  +++K G+  + +V
Sbjct: 339 ISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVV 398

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            SA ++ +++   L+ ++  FE +   +      MI+ + + G  + A++L++       
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYE------- 451

Query: 344 RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           R  E T++   + +         Q   +      + N V  ++++  Y + G +  + ++
Sbjct: 452 RVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDL 511

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F K+  ++  SW  ++ G  QN  + E L++  EL   G  P   +  + L AC   G V
Sbjct: 512 FQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDV 571

Query: 464 DKGMLVFS 471
           + G ++ S
Sbjct: 572 EIGRVIHS 579



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 39/226 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C +  +    +  H  +FKLGF+   ++GN  + +Y + G  D    +F+E+P+
Sbjct: 691 TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPE 749

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+WN                               +++ G A  G    A+++F +M
Sbjct: 750 HDLITWN-------------------------------AVLVGCAQNGLGKEAIKIFEQM 778

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +++G+ P   +F  +L   S A     G     SM +    +  V     ++D+ G+ G 
Sbjct: 779 EVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGY 838

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM 237
           L  A  +  NM  + D + W +L+  C    N   G+   ++ + M
Sbjct: 839 LSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQM 884


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 321/613 (52%), Gaps = 46/613 (7%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C   +     K IHG L K+  +   ++G+  +DLY++ G  +D             
Sbjct: 249 LKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMND------------- 295

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL- 140
                             A+KVF E P+PDVV W S+ISGY   G  + AL  FS+M + 
Sbjct: 296 ------------------AVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVS 337

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           + V P   T    L +V+SAC        G+ +HG + R GL  + + L NSL+ +YGK 
Sbjct: 338 EKVSPDPVT----LVSVASACAQLSNFKLGRSVHGFVKRKGLD-NKLCLANSLLHLYGKT 392

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F  M + DIISW+++++   ++G     LD F  M      P+  T+  V+
Sbjct: 393 GSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVL 452

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  + NL++G ++  L+V  GF   + V +A +D++ KC   E +V LF ++ + D  
Sbjct: 453 RACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVI 512

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
              V+ S Y   G    ++ +F+ ML    RP    L  +L++I  +  ++     H+  
Sbjct: 513 AWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFV 572

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK+GF++N  + +SL+E+YAK  SI+ + ++F  +  +D+V+W++I+     +G+  E L
Sbjct: 573 IKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEAL 632

Query: 433 DVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
            +F ++       P+ +T  ++L AC++ G + +G+ +F  M  +Y + P  EHYA ++D
Sbjct: 633 KLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVD 692

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL + G+L  A+D+ + MP Q G  IW ++L A  I+ ++K+ E  A+ +  L       
Sbjct: 693 LLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGY 752

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL+  Y++   W +  ++++++++  +NK+ G S + +KN + +F AG+  H     I
Sbjct: 753 YILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHI 812

Query: 612 YLVLRLLTWEMED 624
           Y +L  L  +M +
Sbjct: 813 YEILTKLHAKMRE 825



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 188/366 (51%), Gaps = 11/366 (3%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           LL T  S     Q+H   +++GL   + ++   L  +Y +   +++A  +F       + 
Sbjct: 145 LLETCCSKLSISQLHSQCLKAGLVHDSFIV-TKLNVLYARYASIHHAHKLFQETPHRTVY 203

Query: 213 SWNSLI-SGCFNSGYGELALDQFYSMR-YSGYS----PDEYTISIVINACTKLRNLDKGK 266
            WN+L+ S CF   + E  L  F  M   S  S    PD Y++SI + +C  LR L  GK
Sbjct: 204 LWNALLRSYCFEGEWVE-TLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGK 262

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +     KV    +  V SA IDL++KC ++ D+V++F +  + D  +   +IS Y + G
Sbjct: 263 VIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSG 322

Query: 327 FGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
             E+AL  F ++++ E + P   TL  V S+   +   + G   H    + G D+   +A
Sbjct: 323 SPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLA 382

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +SL+ +Y KTGSI +++ +F ++  +D++SW+T++     NG   + LD+F E+L++ + 
Sbjct: 383 NSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIK 442

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T+ +VL AC     +++GM +   +   YG          ++D+  +     KA+D
Sbjct: 443 PNWVTVVSVLRACACISNLEEGMKIHE-LAVNYGFEMETTVSTALMDMYMKCFSPEKAVD 501

Query: 505 ITSTMP 510
           + + MP
Sbjct: 502 LFNRMP 507


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 180/588 (30%), Positives = 316/588 (53%), Gaps = 35/588 (5%)

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           D   ++F+++P ++ ISWN+ L G +K+ NL  A  +F+++PE DVVSWN+M+SG+A  G
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167

Query: 127 YSDYALEMFSKMQLQG-VRPSG-----------------FTFSILLSTVSSAC-HGKQIH 167
           + + A ++F +M ++  +  +G                 F   +    VS  C  G  + 
Sbjct: 168 FVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 168 GSMIRSGLSL------SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
              +    SL       + +  N +I  Y + G+L  A  +F  +   D+ +W +++SG 
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGF 287

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G  + A   F  M       +E + + +I    + + ++K +++F          N+
Sbjct: 288 VQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPS----RNT 339

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
              +  +  +++C  ++ +  LF+++ + D      MIS Y + G  E AL LF  M R+
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399

Query: 342 DIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
                   L+C LSS   I  +E G Q H   +K+GF +  +  ++L+ MY K GSI+ +
Sbjct: 400 GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F  + ++D+VSWNT++ G  ++G   E L +FE + +  + PD +TL  VL AC++ 
Sbjct: 460 FDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHT 518

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           GFVDKGM  F++M + YG+    +HY C+IDLL +AG+L +A+++  +MPF P  + W +
Sbjct: 519 GFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L AS I+GD +L E  AE++ +++  +   Y LL+  YA  GRW  +  ++  MR  G+
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            KV G SW+ I+N+ + F  G+  H   ++IY  L  L  E++ +G V
Sbjct: 639 KKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFV 686



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 212/493 (43%), Gaps = 67/493 (13%)

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           I   + + WN  +   ++    ++AL VF+ +     V++N+MISGY S    D A ++F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            KM      P                                 +++  N ++  Y K G 
Sbjct: 115 EKM------PD-------------------------------RDLISWNVMLSGYVKNGN 137

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  M E D++SWN+++SG   +G+ E A   F  M       +E + + +++A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSA 193

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
             +   ++  +++F   +    +S + ++   +    +  RL+D+  LF+++   D    
Sbjct: 194 YVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV----RKKRLDDARSLFDRMPVRDKISW 249

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAI 373
           N+MI+ Y + G    A  LF+ +   D+    F  + ++S      +  E    F  M  
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPE 305

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+    NA++A      Y ++  I+ + E+F ++  R+  SWNT++ G  Q G   +   
Sbjct: 306 KNEVSWNAMIAG-----YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F+E+ +     D I+ AA++      G  ++ + +F  MK + G++      AC +   
Sbjct: 361 LFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL-NRSALACALSSC 415

Query: 494 CQ--AGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
            +  A +LGK +        FQ G     ++L   A+YG     E   +   D+     +
Sbjct: 416 AEIAALELGKQLHGRLVKAGFQTGYIAGNALL---AMYGKCGSIEEAFDVFEDITEKDIV 472

Query: 551 PYSLLTQAYAMRG 563
            ++ +   YA  G
Sbjct: 473 SWNTMIAGYARHG 485


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 180/602 (29%), Positives = 320/602 (53%), Gaps = 44/602 (7%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D  + +H    K G  +  ++ N  +++Y++ G                           
Sbjct: 222 DLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL-------------------------- 255

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF--SKMQLQGVRPSGFT 149
                ++ A  VF  +   D+VSWN++++G    G+   AL++F  S+  +  +  S + 
Sbjct: 256 -----VEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYA 310

Query: 150 FSI-LLSTVSSACHGKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             I L + +      +Q+H S+++ G  S  NV+   +L+D Y K G L  A  +FL M 
Sbjct: 311 TVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM--TALMDAYSKAGQLGNALDIFLLMS 368

Query: 208 -ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              +++SW ++I+GC  +G   LA   F  MR  G +P+++T S ++ A           
Sbjct: 369 GSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVA----SLPP 424

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  +K  +   SIV +A +  +SK    E+++ +F+ +D+ D    + M++ Y + G
Sbjct: 425 QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 484

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKSGFDSNAVVA 384
             + A  +F  M    ++P EFT+S V+ +   P   V+ G QFH+++IK        V+
Sbjct: 485 DSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVS 544

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           S+L+ MYA+ GSI+S+  IF +   RDLVSWN+++ G  Q+G + + LDVF ++  EG+ 
Sbjct: 545 SALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIE 604

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D +T  +V++ C + G V++G   F +M  +YG+ P  EHYAC++DL  +AG+L +A+ 
Sbjct: 605 MDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMS 664

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   M F  G  +W ++L A  ++ +V+L +  AE+++ L+      Y LL+  Y+  G+
Sbjct: 665 LIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGK 724

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           W+    V+K+M    + K  GCSWI IKN++++F A +  H   ++IY  LR +T +++ 
Sbjct: 725 WKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQ 784

Query: 625 EG 626
           EG
Sbjct: 785 EG 786



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 146/597 (24%), Positives = 274/597 (45%), Gaps = 104/597 (17%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLF 73
           L  C  + DR L        K +HG   + G +     +G   +D+Y ++ +  D  ++F
Sbjct: 110 LKVCGSVPDRVL-------GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVF 162

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           + +P++N ++W                                S+++GY   G     +E
Sbjct: 163 EAMPKRNVVTW-------------------------------TSLLTGYIQDGALSDVME 191

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F +M+ +GV P+  TF+ +LS V+S      G+++H   ++ G   S V + NSL++MY
Sbjct: 192 LFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFG-CCSTVFVCNSLMNMY 250

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G++  A  VF  ME  D++SWN+L++G   +G+   AL  F+  R S     + T +
Sbjct: 251 AKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYA 310

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF------ 304
            VI  C  ++ L   +Q+ +  +K GF S   V++A +D +SK  +L +++ +F      
Sbjct: 311 TVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGS 370

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS--IPIPPV 362
           + +  W  A+IN  I      G   +A  LF  M  + + P +FT S +L++    +PP 
Sbjct: 371 QNVVSWT-AMINGCIQN----GDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPP- 424

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
               Q H+  IK+ ++  ++V ++L+  Y+K  + + +  IF  +D++D+VSW+ ++   
Sbjct: 425 ----QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCY 480

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            Q G +    ++F ++   GL P+  T+++V+ AC                    GV  G
Sbjct: 481 AQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDAC---------------ASPTAGVDLG 525

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            + +A  I   C       A+ ++S            +++   A  G ++  + + ER  
Sbjct: 526 RQFHAISIKHRCH-----DALCVSS------------ALVSMYARKGSIESAQCIFERQT 568

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI--------NKVTGCSWIGI 591
           D  L S   ++ +   YA  G  +  + V + M   GI        + + GC+  G+
Sbjct: 569 DRDLVS---WNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGL 622



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 8/363 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLS--- 155
           A + FDEIP  + +  +  +  +A  G    AL+ F  + +  G R  G     +L    
Sbjct: 57  ARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           +V     GKQ+HG  IR G    +V +G SL+DMY K   +     VF  M + ++++W 
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           SL++G    G     ++ F+ MR  G  P+  T + V++       +D G++V A SVK 
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKF 234

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G  S   V ++ +++++KC  +E++  +F  ++  D    N +++     G    AL+LF
Sbjct: 235 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLF 294

Query: 336 QLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
                     T+ T + V+     I  +    Q HS  +K GF S   V ++LM+ Y+K 
Sbjct: 295 HDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKA 354

Query: 395 GSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           G + ++ +IF+ +   +++VSW  ++ G  QNG       +F  + E+G+ P+  T + +
Sbjct: 355 GQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTI 414

Query: 454 LLA 456
           L A
Sbjct: 415 LTA 417



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 195/405 (48%), Gaps = 42/405 (10%)

Query: 9   HVNKASLSYCSQ-----LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           H +++S++  +Q     +I  C + K    A+ +H  + K GF+++  +    +D YS+ 
Sbjct: 295 HDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKA 354

Query: 64  GTSDDVLQLFDEIP-QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
           G   + L +F  +   +N +SW                                +MI+G 
Sbjct: 355 GQLGNALDIFLLMSGSQNVVSW-------------------------------TAMINGC 383

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVL 182
              G    A  +FS+M+  GV P+ FT+S +L T S A    QIH  +I++    +++V 
Sbjct: 384 IQNGDVPLAAALFSRMREDGVAPNDFTYSTIL-TASVASLPPQIHAQVIKTNYECTSIV- 441

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           G +L+  Y KL     A  +F  +++ D++SW+++++    +G  + A + F  M   G 
Sbjct: 442 GTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGL 501

Query: 243 SPDEYTISIVINAC-TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            P+E+TIS VI+AC +    +D G+Q  A+S+K        V SA + ++++   +E + 
Sbjct: 502 KPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQ 561

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIP 360
            +FE+    D    N M+S Y ++G+ + AL++F+ M  E I     T LS ++      
Sbjct: 562 CIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAG 621

Query: 361 PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            VE G + F SMA   G        + ++++Y++ G +D +  + 
Sbjct: 622 LVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLI 666


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/554 (31%), Positives = 302/554 (54%), Gaps = 6/554 (1%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
            +L   ++D A+ +F +I EPD  ++N MI G+        A+ +F +M    V+P  FT
Sbjct: 67  AILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFT 126

Query: 150 FSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           F  +L   S + +   G+QIH  +++ G   S+  + N+LI MY   G +  A  VF  M
Sbjct: 127 FPCILKVCSRLQALSEGEQIHALIMKCGFG-SHGFVKNTLIHMYANCGEVEVARRVFDEM 185

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            E ++ +WNS+ +G   SG  E  +  F+ M       DE T+  V+ AC +L +L+ G+
Sbjct: 186 SERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGE 245

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +     + G   N  ++++ +D+++KC +++ + RLF+Q+DR D    + MIS Y +  
Sbjct: 246 WINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQAS 305

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL+LF  M + +I P E T+  +LSS  +   +E G   H    K        + +
Sbjct: 306 RCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGT 365

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +LM+ YAK GS++SS E+F K+  ++++SW  ++ GL  NG+  + L+ F  +LE+ + P
Sbjct: 366 ALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEP 425

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + +T   VL AC++ G VD+G  +F +M  ++G+ P  EHY C++D+L +AG + +A   
Sbjct: 426 NDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQF 485

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP QP   IW ++L +  ++ +V++ E   ++++ L+      Y LL+  YA  GRW
Sbjct: 486 IKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRW 545

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           E  ++V+  M++ GI K  GCS I +   I+ F A +  H   ++IY  +  +  +++  
Sbjct: 546 EDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSA 605

Query: 626 GCVYLECD-KLDVE 638
           G V    + +LD E
Sbjct: 606 GYVPNTAEARLDAE 619



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 186/399 (46%), Gaps = 34/399 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   ++    + IH  + K GF +H ++ N  + +Y+  G  +   ++FDE+ ++N  +W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           N    G  KS N +  +K+F E+ E D+     +++S   +CG         + ++L   
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGR-------LADLEL--- 243

Query: 144 RPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
                              G+ I+  +   GL   N  L  SL+DMY K G +  A  +F
Sbjct: 244 -------------------GEWINRYVEEKGLK-GNPTLITSLVDMYAKCGQVDTARRLF 283

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M+  D+++W+++ISG   +     ALD F+ M+ +   P+E T+  ++++C  L  L+
Sbjct: 284 DQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALE 343

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GK V     K        + +A +D ++KC  +E S+ +F ++   +     V+I    
Sbjct: 344 TGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLA 403

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNA 381
             G G+ ALE F LML +++ P + T   VLS+      V+ G   F SM+   G +   
Sbjct: 404 SNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRI 463

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                ++++  + G I+ + +    +  + + V W T++
Sbjct: 464 EHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLL 502



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 140/305 (45%), Gaps = 43/305 (14%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L+ C +L D        +  + I+ ++ + G   +  L    +D+Y++ G  D   +LFD
Sbjct: 232 LTACGRLAD-------LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD 284

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ +++ ++W                               ++MISGY+       AL++
Sbjct: 285 QMDRRDVVAW-------------------------------SAMISGYSQASRCREALDL 313

Query: 135 FSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +MQ   + P+  T   +LS+ +   +   GK +H  + +  + L+ V LG +L+D Y 
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLT-VTLGTALMDFYA 372

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  +  VF  M   +++SW  LI G  ++G G+ AL+ FY M      P++ T   
Sbjct: 373 KCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIG 432

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           V++AC+    +D+G+ +F ++S   G           +D+  +   +E++ +  + +   
Sbjct: 433 VLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQ 492

Query: 311 DYAVI 315
             AVI
Sbjct: 493 PNAVI 497



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 39/237 (16%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++KA+++   ++  S ++  C    + +  K +H  + K        LG   +D Y++ G
Sbjct: 317 MQKANIDPNEITMVS-ILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCG 375

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           + +  +++F ++P KN +SW + ++GL                               AS
Sbjct: 376 SVESSIEVFGKMPVKNVLSWTVLIQGL-------------------------------AS 404

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G    ALE F  M  + V P+  TF  +LS  S A     G+ +  SM R       + 
Sbjct: 405 NGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIE 464

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQF 234
               ++D+ G+ G++  AF    NM  + + + W +L++ C    N   GE +L Q 
Sbjct: 465 HYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQL 521


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 182/617 (29%), Positives = 323/617 (52%), Gaps = 48/617 (7%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            S ++  C   K  D    +H  + K  F ++ ++GN  +D+Y++ G  +D  Q F+ I  
Sbjct: 432  SSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRN 491

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +                               D VSWN +I GY        A  +F +M
Sbjct: 492  R-------------------------------DNVSWNVIIVGYVQEEDEVEAFHLFRRM 520

Query: 139  QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             L G+ P   + + +LS  +S      GKQ+H   +++G   + +  G+SLIDMY K G 
Sbjct: 521  NLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQE-TKLYSGSSLIDMYAKCGA 579

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ----FYSMRYSGYSPDEYTISI 251
            +  A  +   M E  ++S N+LI+G     Y ++ L+Q    F  M   G +  E T + 
Sbjct: 580  IDSAHKILACMPERSVVSMNALIAG-----YAQINLEQAVNLFRDMLVEGINSTEITFAS 634

Query: 252  VINACTKLRNLDKGKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +++AC + + L+ G+Q+ +L +K+G  L +  +  + + ++    R  D+  LF +    
Sbjct: 635  LLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNP 694

Query: 311  DYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQF 368
              AV+   MIS   +     VAL+L++ M   ++ P + T    L +  +   ++ G++ 
Sbjct: 695  KSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTET 754

Query: 369  HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGR 427
            HS+   +GFDS+ + +S+L++MYAK G + SS ++F ++  K+D++SWN++++G  +NG 
Sbjct: 755  HSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGY 814

Query: 428  AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
            A + L VF+E+ +  + PD +T   VL AC++ G V +G L+F  M   YG+ P  +H A
Sbjct: 815  AEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCA 874

Query: 488  CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
            C++DLL + G L +A +  + + F+P   +W ++L A  I+GD    +  AE++++L+  
Sbjct: 875  CMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQ 934

Query: 548  SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
            +  PY LL+  YA  G W+ +  +++ MR+ G+ K+ GCSWI +      F AG+  HH 
Sbjct: 935  NSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHS 994

Query: 608  GQKIYLVLRLLTWEMED 624
              +I  +L+ LT  M +
Sbjct: 995  ASEIDAILKDLTPLMRE 1011



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 248/477 (51%), Gaps = 41/477 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   +     + +H ++ K+GF + +Y     + +Y++     D   +FD   + +
Sbjct: 166 VLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELD 225

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIP----EPD------------------------- 111
            +SW   + G +K    + A+KVF E+     EPD                         
Sbjct: 226 KVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFS 285

Query: 112 ------VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---H 162
                 VV+WN MISG+A  GY   A+E F  M+  G++ +  T   +LS ++S      
Sbjct: 286 RMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDF 345

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H   ++ GL  SNV +G+SL+ MY K G +  A  VF  + E +++ WN+++ G  
Sbjct: 346 GLLVHAEALKQGLH-SNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYV 404

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +GY    ++ F++M+  G+ PD++T S +++AC  L+ LD G Q+ ++ +K  F SN  
Sbjct: 405 QNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLF 464

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D+++K   LED+ + FE +   D    NV+I  Y +      A  LF+ M    
Sbjct: 465 VGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLG 524

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I P E +L+ +LS+   +  +E G Q H +++K+G ++     SSL++MYAK G+IDS+ 
Sbjct: 525 ILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAH 584

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           +I   + +R +VS N ++ G  Q     + +++F ++L EG+    IT A++L AC+
Sbjct: 585 KILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACH 640



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 211/444 (47%), Gaps = 73/444 (16%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    KLGF +   LGN  +DLY+                               K 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYA-------------------------------KC 107

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            ++D A + F ++ + D+++WNS++S ++  G+    ++ F  +   GV P+ FTF+I+L
Sbjct: 108 ADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVL 167

Query: 155 STVSS----ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           S+ +      C G+Q+H ++++ G    +   G +LI MY K   L  A  +F    ELD
Sbjct: 168 SSCARLEMVKC-GRQVHCNVVKMGFESISYCEG-ALIGMYAKCNFLTDARSIFDGAVELD 225

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +SW S+I G    G  E A+  F  M   G  PD+     VINA   L           
Sbjct: 226 KVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDL----------- 274

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
                                    RL+++  LF ++   +    N+MIS + + G+G  
Sbjct: 275 ------------------------GRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVE 310

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+E FQ M +  I+ T  TL  VLS+I  +  ++ G   H+ A+K G  SN  V SSL+ 
Sbjct: 311 AIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVS 370

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G ++++ ++F  L+++++V WN ++ G  QNG A E +++F  +   G  PD  T
Sbjct: 371 MYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFT 430

Query: 450 LAAVLLACNYGGFVDKGMLVFSAM 473
            +++L AC    ++D G  + S +
Sbjct: 431 YSSILSACACLKYLDLGHQLHSVI 454



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/531 (25%), Positives = 248/531 (46%), Gaps = 41/531 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++KA + K++ S    ++    S  + DF   +H    K G +++ Y+G+  + +Y++ G
Sbjct: 318 MRKAGI-KSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCG 376

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             +   ++FD + ++N + WN                               +M+ GY  
Sbjct: 377 KMEAAKKVFDTLNEQNVVLWN-------------------------------AMLGGYVQ 405

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
            GY++  +E+F  M+  G  P  FT+S +LS  +   +   G Q+H  +I++  + SN+ 
Sbjct: 406 NGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFA-SNLF 464

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +GN+L+DMY K G L  A   F  +   D +SWN +I G         A   F  M   G
Sbjct: 465 VGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLG 524

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE +++ +++AC  +R L++GKQV  LSVK G  +     S+ ID+++KC  ++ + 
Sbjct: 525 ILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAH 584

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIP 360
           ++   +       +N +I+ Y +    E A+ LF+ ML E I  TE T + +L +     
Sbjct: 585 KILACMPERSVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQ 643

Query: 361 PVEHGSQFHSMAIKSGFD-SNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTI 418
            +  G Q HS+ +K G    +  +  SL+ MY  +     ++ +F +  + +  V W  +
Sbjct: 644 KLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAM 703

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + GL+QN  +   L +++E+    + PD+ T  + L AC     +  G    S +    G
Sbjct: 704 ISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHT-G 762

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
               E   + ++D+  + G +  ++ +   M  +     W S++   A  G
Sbjct: 763 FDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNG 813



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 174/360 (48%), Gaps = 39/360 (10%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K IH   ++ G   S  VLGN ++D+Y K   + YA   F  +E+ DI++WNS++S    
Sbjct: 79  KIIHAQSLKLGF-WSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSK 137

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G+  L +  F  +  SG  P+E+T +IV+++C +L  +  G+QV    VK+GF S S  
Sbjct: 138 QGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYC 197

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
             A I +++KCN L D+  +F+     D      MI  Y + G  E A+++FQ M +   
Sbjct: 198 EGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQ 257

Query: 344 RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            P +     V+++                                  Y   G +D+++++
Sbjct: 258 EPDQVAFVTVINA----------------------------------YVDLGRLDNASDL 283

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++  R++V+WN ++ G  + G   E ++ F+ + + G+   R TL +VL A      +
Sbjct: 284 FSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAAL 343

Query: 464 DKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           D G+LV + A+K+  G+       + ++ +  + G++  A  +  T+  Q    +W ++L
Sbjct: 344 DFGLLVHAEALKQ--GLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQ-NVVLWNAML 400


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/544 (30%), Positives = 295/544 (54%), Gaps = 9/544 (1%)

Query: 93  KSDNLDTALKVF-DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K + ++ AL +F D   E +V ++N++ISG+ + G+ +   E + KM+ +GV P  FTF 
Sbjct: 84  KCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFP 143

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             +         K+IHG + + GL L +V +G++L++ Y K G++ +A   F  +   D+
Sbjct: 144 CAIKACLDVLEIKKIHGLLFKFGLEL-DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDV 202

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + WN++++G    G  E+ L+ F  M      P  +T++ V++    + +L+ G+ +   
Sbjct: 203 VLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGF 262

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           ++K+G+ S   V ++ ID++ KC  +ED++ +FE +   D    N ++S + + G  +  
Sbjct: 263 AMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGT 322

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA------VVA 384
           L L   ML   I+P   T++ VL +   +  + HG + H   I SG   +       ++ 
Sbjct: 323 LRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK 382

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +++++MYAK GS+  +  +F ++  +D+ SWN ++MG   +G   E L++F  + E  L 
Sbjct: 383 NAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLK 442

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD +T   VL AC++ GFV +G      MK +Y V P  EHY C+ID+L +AGQL +A +
Sbjct: 443 PDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYE 502

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +  TMP +    +W ++L A  ++    L E  A+R+ +L+      Y L++  Y   GR
Sbjct: 503 LALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGR 562

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           +E ++ V+  MR+  + K  GCSWI +KN ++ F + +  H     IY  L  LT  + +
Sbjct: 563 YEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLRE 622

Query: 625 EGCV 628
            G V
Sbjct: 623 HGYV 626



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 194/398 (48%), Gaps = 46/398 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG LFK G     ++G+  ++ Y +FG                              
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGL----------------------------- 186

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++ A   F+E+P  DVV WN+M++GYA  G  +  LE F +M  + V PS FT + +L
Sbjct: 187 --MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244

Query: 155 STVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  +      +G+ IHG  ++ G   S V + NSLIDMYGK   +  A  +F  M E DI
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGYD-SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 303

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWNS++S     G  +  L     M  +G  PD  T++ V+ AC+ L  L  G+++   
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363

Query: 272 SVKVGF------LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            +  G       + + ++ +A ID+++KC  + D+  +FE++   D A  N+MI  YG +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA 384
           G+G  ALE+F  M    ++P E T   VLS+      V  G  F  + +KS +D    + 
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF-LVQMKSKYDVAPTIE 482

Query: 385 --SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
             + +++M  + G +D + E+ + +  + + V W  ++
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 208/412 (50%), Gaps = 18/412 (4%)

Query: 148 FTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           +  +  ++++ ++ H      GK+IH  M+ +G  L++ +   SLI+MY K   + +A  
Sbjct: 35  YNLTTCIASLQASAHHKNLSKGKEIHSYMLINGF-LNSPLSITSLINMYSKCNQMNFALS 93

Query: 202 VFLN-MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
           +F +   E+++ ++N++ISG   +G+ E   + +  MR  G  PD++T    I AC  + 
Sbjct: 94  IFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVL 153

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            +   K++  L  K G   +  + SA ++ + K   +E +   FE+L   D  + N M++
Sbjct: 154 EI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVN 210

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDS 379
            Y + G  E+ LE F+ M  E + P+ FT++ VLS   +   + +G   H  A+K G+DS
Sbjct: 211 GYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDS 270

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              V++SL++MY K   I+ + EIF  + ++D+ SWN+I+    Q G    TL + + +L
Sbjct: 271 GVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRML 330

Query: 440 EEGLPPDRITLAAVLLACNY-----GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
             G+ PD +T+  VL AC++      G    G ++ S + ++   +        +ID+  
Sbjct: 331 GAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 390

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           + G +  A  +   M  +   S W  ++    ++G       +  RM ++QL
Sbjct: 391 KCGSMRDAHLVFERMSNKDVAS-WNIMIMGYGMHGYGNEALEMFSRMCEVQL 441


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 289/540 (53%), Gaps = 5/540 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A K+FD  P+ D+VSWN +ISGY   G    A  +F  M   G++P   TF+ 
Sbjct: 206 KCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFAS 265

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L  V+   S  H K+IHG +IR  + L +V L ++LID+Y K   +  A  +       
Sbjct: 266 FLPCVNELLSLKHCKEIHGYIIRHAVVL-DVFLKSALIDIYFKCRDVEMAQKILCQSSSF 324

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +   ++ISG   +G  + AL+ F  +      P   T S +  A   L  L+ GK++ 
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELH 384

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K        V SA +D+++KC RL+ + R+F ++   D    N MI++  + G   
Sbjct: 385 GSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+ LF+ M  E  R    ++S  LS+   +P + +G + H + IK    S+    SSL+
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLI 504

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G+++ S  +F ++ +R+ VSWN+I+     +G   E L +F E+L  G+ PD +
Sbjct: 505 DMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHV 564

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   ++ AC + G VD+G+  +  M EEYG+    EHYAC+ D+  +AG+L +A +  ++
Sbjct: 565 TFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINS 624

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF P   +W ++L A  I+G+V+L E  ++ + DL   +   Y LL    A  G+W  +
Sbjct: 625 MPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKV 684

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           ++V+ +M++ G+ KV G SWI + N  + F A +  H    +IY VL  L  E++ EG V
Sbjct: 685 LKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 249/524 (47%), Gaps = 54/524 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   KS    K +H  +  +G     ++G+  + LY+  G   D   LFD IPQK+
Sbjct: 64  VVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKD 123

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN+ L G +K+ +   A+K+F E                               M+ 
Sbjct: 124 SVLWNVMLNGYVKNGDSGNAIKIFLE-------------------------------MRH 152

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             ++P+  TF+ +LS  +S      G Q+HG  +  GL L + V  N+L+ MY K   L 
Sbjct: 153 SEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPV-ANTLLAMYSKCQCLQ 211

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F    + D++SWN +ISG   +G    A   F  M  +G  PD  T +  +    
Sbjct: 212 AARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +L +L   K++    ++   + +  + SA ID++ KC  +E + ++  Q   +D  V   
Sbjct: 272 ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTT 331

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y   G  + ALE F+ +++E ++PT  T S +  +   +  +  G + H   IK+ 
Sbjct: 332 MISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK 391

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D    V S++++MYAK G +D +  +F ++ ++D + WN+++   +QNGR  E +++F 
Sbjct: 392 LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFR 451

Query: 437 ELLEEGLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYA--C 488
           ++  EG   D ++++  L AC      +YG  +  G+++   ++ +         YA   
Sbjct: 452 QMGMEGTRYDCVSISGALSACANLPALHYGKEI-HGLMIKGPLRSDL--------YAESS 502

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           +ID+  + G L  +  +   M  +   S W SI+ A   +GD+K
Sbjct: 503 LIDMYAKCGNLNFSRRVFDRMQERNEVS-WNSIISAYGNHGDLK 545



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 183/369 (49%), Gaps = 5/369 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +++ +L  A  +F  +      +WN MI G+   G  +YAL  + KM   GV P  +TF 
Sbjct: 3   VRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFP 62

Query: 152 ILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            ++     + S   GK +H ++   GL   +V +G+SLI +Y + G L  A  +F N+ +
Sbjct: 63  YVVKACCGLKSVKMGKIVHETVNLMGLK-EDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D + WN +++G   +G    A+  F  MR+S   P+  T + V++ C     LD G Q+
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
             ++V  G   +S V +  + ++SKC  L+ + +LF+   + D    N +IS Y + G  
Sbjct: 182 HGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLM 241

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             A  LF+ M+   I+P   T +  L  +  +  ++H  + H   I+     +  + S+L
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y K   ++ + +I  +    D V   T++ G   NG+  E L+ F  L++E + P  
Sbjct: 302 IDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTS 361

Query: 448 ITLAAVLLA 456
           +T +++  A
Sbjct: 362 VTFSSIFPA 370



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 219/510 (42%), Gaps = 80/510 (15%)

Query: 8   AHVNKASLSYCSQL--IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT 65
           A +   S+++ S L  ++  LS K     K IHG++ +       +L +  +D+Y     
Sbjct: 254 AGIKPDSITFASFLPCVNELLSLKH---CKEIHGYIIRHAVVLDVFLKSALIDIY----- 305

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
                                      K  +++ A K+  +    D V   +MISGY   
Sbjct: 306 --------------------------FKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLN 339

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVL 182
           G +  ALE F  +  + ++P+  TFS +    +       GK++HGS+I++ L      +
Sbjct: 340 GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLD-EKCHV 398

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           G++++DMY K G L  A  VF  + E D I WNS+I+ C  +G    A++ F  M   G 
Sbjct: 399 GSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGT 458

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
             D  +IS  ++AC  L  L  GK++  L +K    S+    S+ ID+++KC  L  S R
Sbjct: 459 RYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRR 518

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPP 361
           +F+++   +    N +IS YG +G  +  L LF  MLR  I+P   T   ++S+      
Sbjct: 519 VFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQ 578

Query: 362 VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
           V+ G + +H M  + G  +     + + +M+ + G +D                      
Sbjct: 579 VDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLD---------------------- 616

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
                       + FE +     PPD      +L AC+  G V+   L   A K  + + 
Sbjct: 617 ------------EAFETINSMPFPPDAGVWGTLLGACHIHGNVE---LAEVASKHLFDLD 661

Query: 481 P-GEEHYACIIDLLCQAGQLGKAIDITSTM 509
           P    +Y  + ++   AG+  K + + S M
Sbjct: 662 PLNSGYYVLLANVQAGAGKWRKVLKVRSIM 691



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 142/271 (52%), Gaps = 1/271 (0%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY + G L  A  +F  ++     +WN +I G    G    AL  +  M  +G SPD+YT
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              V+ AC  L+++  GK V      +G   +  V S+ I L+++   L D+  LF+ + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ 367
           + D  + NVM++ Y + G    A+++F  M   +I+P   T +CVLS       ++ G+Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H +A+  G + ++ VA++L+ MY+K   + ++ ++F    + DLVSWN I+ G  QNG 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             E   +F  ++  G+ PD IT A+ L   N
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVN 271


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 187/592 (31%), Positives = 309/592 (52%), Gaps = 46/592 (7%)

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            LFD++P+++  SWN+ L G +++  L  A ++FD +PE DVVSWNS++SGYA  GY D 
Sbjct: 101 NLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDE 160

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A E+F  M       +  +++ LL+      +G+     ++    S  +++  N L+  +
Sbjct: 161 AREVFDNMP----EKNSISWNGLLAAYVH--NGRIEEACLLFESKSDWDLISWNCLMGGF 214

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            +   L  A  +F  M   D ISWN++ISG    G     L Q   +     + D +T +
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG----GLSQARRLFDESPTRDVFTWT 270

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +++   +   LD+ K  F    +     N +  +A I  + +  +++ +  LFE +   
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRP------------------------- 345
           + +  N MI+ YG+ G    A + F +M + D                            
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 346 ------TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                    T  C LS+   I  +E G Q H  A+K G+ +   V ++L+ MY K GSID
Sbjct: 387 QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSID 446

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + + F  ++++D+VSWNT++ G  ++G   + L VFE +   G+ PD IT+  VL AC+
Sbjct: 447 EANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACS 506

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           + G +D+G   F +M ++YGV+P  +HY C+IDLL +AG+L +A D+   MPFQPG + W
Sbjct: 507 HTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASW 566

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            ++L AS I+G+ +L E  AE +  ++  +   Y LL+  YA  GRW    +++  MR  
Sbjct: 567 GALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDI 626

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYL 630
           G+ KV G SW+ ++N+I+TF+ G+  H   ++IY  L  L  +M +EG V L
Sbjct: 627 GVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSL 678



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 136/245 (55%), Gaps = 5/245 (2%)

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           D   +LF+ +P +N  SWN  + G  +  ++  A K FD +P+ D VSW ++I+GYA  G
Sbjct: 314 DIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLG 183
           + + AL MF +++  G   +  TF   LST +       GKQIHG  ++ G   +   +G
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG-TGCFVG 432

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N+L+ MY K G +  A   F  +EE D++SWN++++G    G+G  AL  F SM+ +G  
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492

Query: 244 PDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
           PDE T+  V++AC+    LD+G + F +++   G +  S   +  IDL  +  RLE++  
Sbjct: 493 PDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQD 552

Query: 303 LFEQL 307
           L   +
Sbjct: 553 LIRNM 557



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 177/386 (45%), Gaps = 27/386 (6%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +   + + WN  +   +++ + D+AL VF+ +P    VS+N+MISGY      + A  +
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F +M  + +    F+++++L+     C  +      +   +   +VV  NSL+  Y + G
Sbjct: 103 FDQMPERDL----FSWNVMLTGYVRNC--RLGDARRLFDLMPEKDVVSWNSLLSGYAQNG 156

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF NM E + ISWN L++   ++G  E A   F S        D  + + ++ 
Sbjct: 157 YVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS----DWDLISWNCLMG 212

Query: 255 ACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
              + + L   + +F  + V+     ++I  +  I  +++   L  + RLF++    D  
Sbjct: 213 GFVRKKKLGDARWLFDKMPVR-----DAISWNTMISGYAQGGGLSQARRLFDESPTRDVF 267

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSM 371
               M+S Y + G  + A   F  M  ++    E + + +++  +    ++   + F SM
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EVSYNAMIAGYVQTKKMDIARELFESM 323

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             +     N    ++++  Y + G I  + + F  + +RD VSW  I+ G  Q+G   E 
Sbjct: 324 PCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 432 LDVFEELLEEGLPPDRITLAAVLLAC 457
           L++F E+ ++G   +R T    L  C
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTC 404



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 41/235 (17%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           +N+A+   C+  +  C    + +  K IHG   K+G+    ++GN  L +Y + G+ D+ 
Sbjct: 392 LNRATFG-CA--LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEA 448

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+ I +K+ +SWN                               +M++GYA  G+  
Sbjct: 449 NDTFEGIEEKDVVSWN-------------------------------TMLAGYARHGFGR 477

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSL 186
            AL +F  M+  GV+P   T   +LS  S       G +   SM +    +        +
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCM 537

Query: 187 IDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
           ID+ G+ G L  A  +  NM  +    SW +L+       N+  GE A +  + M
Sbjct: 538 IDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 16/171 (9%)

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           + ++ +F  + R      N MIS Y R     +A  LF  M   D+      L+  + + 
Sbjct: 66  DSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +        F  M  K     + V  +SL+  YA+ G +D + E+F  + +++ +SWN 
Sbjct: 126 RLGDARR--LFDLMPEK-----DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG 178

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           ++     NGR  E   +FE   +  L         +   C  GGFV K  L
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDL---------ISWNCLMGGFVRKKKL 220


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 182/610 (29%), Positives = 322/610 (52%), Gaps = 37/610 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           SF   ++ K +H HL       +  L    +D+Y                          
Sbjct: 228 SFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYC------------------------- 262

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                 K  +++ A+KV     E DV  W ++ISG+        A+  F +M+  GV P+
Sbjct: 263 ------KCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPN 316

Query: 147 GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL-GVLYYAFGV 202
            FT+S +L+  SS      GKQIH  ++ +GL  ++V +GNSL+DMY K   ++  A   
Sbjct: 317 NFTYSGILNACSSILALDLGKQIHSRVVMAGLE-NDVSVGNSLVDMYMKCSNMIEDAVRA 375

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  +   ++ISW SLI+G    G  E ++  F +M+  G  P+ +T+S ++ AC  +++L
Sbjct: 376 FRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSL 435

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            + +++    +K    ++ +V +A +D ++    ++D+  +   +   D      + +  
Sbjct: 436 TQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRI 495

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G  E+AL +   M ++D+R   F+L+  LS+   IP +E G Q H  ++KSG  S  
Sbjct: 496 NQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWI 555

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V++ L+++Y K G I  +   F+++ + D VSWN ++ GL  NG  +  L  FE++   
Sbjct: 556 SVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLA 615

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ PD+IT   VL AC++GG VD G+  F +M+E++G+ P  +HY C++DLL +AG+L +
Sbjct: 616 GVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEE 675

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A+++  TMPF+P   I++++L A  ++G++ L E++A + ++L    P  Y LL   Y  
Sbjct: 676 AMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDD 735

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            GR E   + +++MR+ G+ K  G SW+  +N ++ F AG+  H    KI+  +  L  +
Sbjct: 736 SGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQ 795

Query: 622 MEDEGCVYLE 631
             ++G  Y E
Sbjct: 796 FRNQGIWYQE 805



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 214/442 (48%), Gaps = 36/442 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C + + F+        + K GF+++  LG+  +D YS+ G + +          
Sbjct: 120 STALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQE---------- 169

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VF+ +   D+VSW  M+S +   G    AL+++ +M
Sbjct: 170 ---------------------AYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRM 208

Query: 139 QLQGVRPSGFTFSILLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              GV P+ FTF  LL+  S     +GK +H  ++   + L N+VL  +L+DMY K   +
Sbjct: 209 IQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIEL-NLVLKTALVDMYCKCQSI 267

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  V     E D+  W ++ISG   S     A+  F+ M  SG  P+ +T S ++NAC
Sbjct: 268 EDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNAC 327

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAVI 315
           + +  LD GKQ+ +  V  G  ++  V ++ +D++ KC N +ED+VR F  +   +    
Sbjct: 328 SSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISW 387

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIK 374
             +I+ +  +G  E ++++F  M    +RP  FTLS +L +   I  +    + H   IK
Sbjct: 388 TSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIK 447

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +  D++ VV ++L++ YA  G +D +  +   +  RD++++ ++   + Q G     L++
Sbjct: 448 NNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNI 507

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
              + ++ +  D  +LA+ L A
Sbjct: 508 ITHMNKDDVRMDGFSLASFLSA 529



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 210/427 (49%), Gaps = 40/427 (9%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSR-FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           IH  + K+GF    +L N  L LY + FG ++   QLFDE+P ++  SW + +    K  
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAE-ARQLFDEMPCRDVASWTMLMSAYGKIG 95

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N + AL++FD                                M + G  P+ FT S  L 
Sbjct: 96  NHEEALELFD-------------------------------SMLISGEYPNEFTLSTALR 124

Query: 156 TVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           + S+     HG +    + +SG   SN VLG++LID Y K G    A+ VF  M   DI+
Sbjct: 125 SCSALREFNHGTRFQALVTKSGFD-SNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIV 183

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW  ++S    +G    AL  ++ M  +G +P+E+T   ++ A + L  L+ GK V A  
Sbjct: 184 SWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHL 242

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +      N ++ +A +D++ KC  +ED+V++ +    +D  +   +IS + +      A+
Sbjct: 243 MMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAI 302

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
             F  M    + P  FT S +L++   I  ++ G Q HS  + +G +++  V +SL++MY
Sbjct: 303 TAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMY 362

Query: 392 AK-TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
            K +  I+ +   F  +   +++SW +++ G +++G   E++ VF  +   G+ P+  TL
Sbjct: 363 MKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTL 422

Query: 451 AAVLLAC 457
           + +L AC
Sbjct: 423 STILGAC 429



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 178/346 (51%), Gaps = 11/346 (3%)

Query: 145 PSGFTFSILLSTVS-----SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           PS   +S+L   VS     S   G  IH  +I+ G    ++ L N+L+ +YGK   +  A
Sbjct: 11  PSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQ-EDMFLSNNLLSLYGKCFGVAEA 69

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             +F  M   D+ SW  L+S     G  E AL+ F SM  SG  P+E+T+S  + +C+ L
Sbjct: 70  RQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSAL 129

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           R  + G +  AL  K GF SN ++ SA ID +SKC   +++ R+FE ++  D     +M+
Sbjct: 130 REFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMV 189

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDS 379
           S++   G    AL+L+  M++  + P EFT   +L++     + +G   H+  +    + 
Sbjct: 190 SSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIEL 249

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N V+ ++L++MY K  SI+ + ++     + D+  W  I+ G TQ+ +  E +  F E+ 
Sbjct: 250 NLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEME 309

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
             G+ P+  T + +L AC+    +D G  + S +     VM G E+
Sbjct: 310 TSGVVPNNFTYSGILNACSSILALDLGKQIHSRV-----VMAGLEN 350



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C + KS    + +HG++ K   +    +GN  +D Y+  G  DD          
Sbjct: 423 STILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDD---------- 472

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
               +W++            T++     +   DV+++ S+ +     G  + AL + + M
Sbjct: 473 ----AWHV------------TSM-----MKHRDVITYTSLATRINQTGNHEMALNIITHM 511

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               VR  GF+ +  LS  +       GKQ+H   ++SGL  S + + N L+D+YGK G 
Sbjct: 512 NKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLG-SWISVSNGLVDLYGKCGC 570

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           ++ A   FL + E D +SWN LI G  ++G+   AL  F  MR +G  PD+ T  +V+ A
Sbjct: 571 IHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYA 630

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    +D G   F ++  K G           +DL  +  RLE+++ + E +
Sbjct: 631 CSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETM 683


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 294/541 (54%), Gaps = 32/541 (5%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK---QIHGSM 170
           +W+S+I  Y S      +   F+ M+   V P+   F  LL   +   H K    +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 171 IRSGLSLSNVVLGNSLIDMYGKL---GVLYYAF------------GVFLNMEELDIISWN 215
           +R GL  S++ + N+LI+ Y K    G ++  F             VF  M   D++SWN
Sbjct: 137 VRLGLD-SDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWN 195

Query: 216 SLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           ++I+G   +G    ALD    M  +G   PD +T+S ++    +  +++KGK++   +V+
Sbjct: 196 TVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVR 255

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            GF  +  + S+ ID+++KCNRLE S+R F  L R D    N +I+   + G  +  L  
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGF 315

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPIPPVEH------GSQFHSMAIKSGFDSNAVVASSLM 388
           F+ ML+E+++P   + S V     IP   H      G Q H   ++ GFD N  +ASSL+
Sbjct: 316 FRRMLKENVKPMAVSFSSV-----IPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLV 370

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G+I  +  +F ++DKRD+V+W  I+MG   +G A + + +FE +LE+G+ P  +
Sbjct: 371 DMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYV 430

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              AVL AC++ G VD+G   F++M+ ++G+ PG EHYA + DLL +AG+L +A D  S 
Sbjct: 431 AFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISN 490

Query: 509 MP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           M   QP  S+W  +L A   +  V+L E V ++++ +   +   Y L++  Y+   RW+ 
Sbjct: 491 MRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKD 550

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
             R++  MRK G+ K   CSWI + N+++TF AG+  H    KI   L +L  +ME EG 
Sbjct: 551 AARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGY 610

Query: 628 V 628
           V
Sbjct: 611 V 611



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 214/441 (48%), Gaps = 33/441 (7%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
            K    A ++H    +LG ++  Y+ N  ++ Y++F  +  V   FD  P++        
Sbjct: 123 LKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKV---FDVFPKRG------- 172

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPS 146
                    +D   KVFD +P  DVVSWN++I+G+A  G    AL+M  +M   G ++P 
Sbjct: 173 ------ESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPD 226

Query: 147 GFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT S +L   +       GK+IHG  +R+G    +V +G+SLIDMY K   L  +   F
Sbjct: 227 SFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFD-GDVFIGSSLIDMYAKCNRLECSLRAF 285

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             +   D ISWNS+I+GC  +G  +  L  F  M      P   + S VI AC  L  L 
Sbjct: 286 YILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALS 345

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+Q+    V++GF  N  + S+ +D+++KC  ++ +  +F+++D+ D      +I    
Sbjct: 346 LGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCA 405

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSM----AIKSGF 377
            +G    A+ LF+ ML + +RP       VL++      V+ G + F+SM     I  G 
Sbjct: 406 MHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGL 465

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           +  A VA    ++  + G ++ + +    +  R +    ++   L    RA +++++ E+
Sbjct: 466 EHYAAVA----DLLGRAGRLEEAYDFISNM--RGVQPTGSVWSILLAACRAHKSVELAEK 519

Query: 438 LLEEGLPPDRITLAAVLLACN 458
           +L++ L  D   + A +L  N
Sbjct: 520 VLDKLLSVDSENMGAYVLMSN 540



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 40/239 (16%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K +V   ++S+ S +I  C    +    + +HG + +LGF+ + ++ +  +D+Y++ G  
Sbjct: 321 KENVKPMAVSF-SSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNI 379

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
                +FD I ++                               D+V+W ++I G A  G
Sbjct: 380 KMARYVFDRIDKR-------------------------------DMVAWTAIIMGCAMHG 408

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLG 183
           ++  A+ +F  M   GVRP    F  +L+  S A     G +   SM R       +   
Sbjct: 409 HALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHY 468

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIIS--WNSLISGCFNSGYGELA---LDQFYSM 237
            ++ D+ G+ G L  A+    NM  +      W+ L++ C      ELA   LD+  S+
Sbjct: 469 AAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSV 527


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 187/592 (31%), Positives = 310/592 (52%), Gaps = 46/592 (7%)

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            LFD++P+++  SWN+ L G +++  L  A ++FD +PE DVVSWNS++SGYA  GY D 
Sbjct: 101 NLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDE 160

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A E+F  M       +  +++ LL+  +   +G+     ++    S  +++  N L+  +
Sbjct: 161 AREVFDNMP----EKNSISWNGLLA--AYVHNGRIEEACLLFESKSDWDLISWNCLMGGF 214

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            +   L  A  +F  M   D ISWN++ISG    G     L Q   +     + D +T +
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG----GLSQARRLFDESPTRDVFTWT 270

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +++   +   LD+ K  F    +     N +  +A I  + +  +++ +  LFE +   
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRP------------------------- 345
           + +  N MI+ YG+ G    A + F +M + D                            
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 346 ------TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                    T  C LS+   I  +E G Q H  A+K G+ +   V ++L+ MY K GSID
Sbjct: 387 QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSID 446

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + + F  ++++D+VSWNT++ G  ++G   + L VFE +   G+ PD IT+  VL AC+
Sbjct: 447 EANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACS 506

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           + G +D+G   F +M ++YGV+P  +HY C+IDLL +AG+L +A D+   MPFQPG + W
Sbjct: 507 HTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASW 566

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            ++L AS I+G+ +L E  AE +  ++  +   Y LL+  YA  GRW    +++  MR  
Sbjct: 567 GALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDI 626

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYL 630
           G+ KV G SW+ ++N+I+TF+ G+  H   ++IY  L  L  +M +EG V L
Sbjct: 627 GVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSL 678



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 136/245 (55%), Gaps = 5/245 (2%)

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           D   +LF+ +P +N  SWN  + G  +  ++  A K FD +P+ D VSW ++I+GYA  G
Sbjct: 314 DIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSG 373

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLG 183
           + + AL MF +++  G   +  TF   LST +       GKQIHG  ++ G   +   +G
Sbjct: 374 HYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG-TGCFVG 432

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N+L+ MY K G +  A   F  +EE D++SWN++++G    G+G  AL  F SM+ +G  
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492

Query: 244 PDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
           PDE T+  V++AC+    LD+G + F +++   G +  S   +  IDL  +  RLE++  
Sbjct: 493 PDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQD 552

Query: 303 LFEQL 307
           L   +
Sbjct: 553 LIRNM 557



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 177/386 (45%), Gaps = 27/386 (6%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +   + + WN  +   +++ + D+AL VF+ +P    VS+N+MISGY      + A  +
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F +M  + +    F+++++L+     C  +      +   +   +VV  NSL+  Y + G
Sbjct: 103 FDQMPERDL----FSWNVMLTGYVRNC--RLGDARRLFDLMPEKDVVSWNSLLSGYAQNG 156

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF NM E + ISWN L++   ++G  E A   F S        D  + + ++ 
Sbjct: 157 YVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS----DWDLISWNCLMG 212

Query: 255 ACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
              + + L   + +F  + V+     ++I  +  I  +++   L  + RLF++    D  
Sbjct: 213 GFVRKKKLGDARWLFDKMPVR-----DAISWNTMISGYAQGGGLSQARRLFDESPTRDVF 267

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSM 371
               M+S Y + G  + A   F  M  ++    E + + +++  +    ++   + F SM
Sbjct: 268 TWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EVSYNAMIAGYVQTKKMDIARELFESM 323

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             +     N    ++++  Y + G I  + + F  + +RD VSW  I+ G  Q+G   E 
Sbjct: 324 PCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 432 LDVFEELLEEGLPPDRITLAAVLLAC 457
           L++F E+ ++G   +R T    L  C
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTC 404



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 41/235 (17%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           +N+A+   C+  +  C    + +  K IHG   K+G+    ++GN  L +Y + G+ D+ 
Sbjct: 392 LNRATFG-CA--LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEA 448

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+ I +K+ +SWN                               +M++GYA  G+  
Sbjct: 449 NDTFEGIEEKDVVSWN-------------------------------TMLAGYARHGFGR 477

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSL 186
            AL +F  M+  GV+P   T   +LS  S       G +   SM +    +        +
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCM 537

Query: 187 IDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
           ID+ G+ G L  A  +  NM  +    SW +L+       N+  GE A +  + M
Sbjct: 538 IDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 38/152 (25%)

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           L   LL   Y G +D G   F  M EEY V P  +HY C+IDLL +  +L +        
Sbjct: 767 LQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG------- 819

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
                     ++L AS I+G+ +L E  A+                   + M  +   I 
Sbjct: 820 ----------ALLGASRIHGNTELGEKAAQMF-----------------FKMGPQNSGIS 852

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG 601
           +    MR  G+ KV G SW  ++N+I+TF+ G
Sbjct: 853 K----MRDVGVQKVPGYSWFEVQNKIHTFSVG 880



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 16/171 (9%)

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           + ++ +F  + R      N MIS Y R     +A  LF  M   D+      L+  + + 
Sbjct: 66  DSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +        F  M  K     + V  +SL+  YA+ G +D + E+F  + +++ +SWN 
Sbjct: 126 RLGDARR--LFDLMPEK-----DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG 178

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           ++     NGR  E   +FE   +  L         +   C  GGFV K  L
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDL---------ISWNCLMGGFVRKKKL 220


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 165/544 (30%), Positives = 295/544 (54%), Gaps = 9/544 (1%)

Query: 93  KSDNLDTALKVF-DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K + ++ AL +F D   E +V ++N++ISG+ + G+ +   E + KM+ +GV P  FTF 
Sbjct: 84  KCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFP 143

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             +         K+IHG + + GL L +V +G++L++ Y K G++ +A   F  +   D+
Sbjct: 144 CAIKACLDVLEIKKIHGLLFKFGLEL-DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDV 202

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + WN++++G    G  E+ L+ F  M      P  +T++ V++    + +L+ G+ +   
Sbjct: 203 VLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGF 262

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           ++K+G+ S   V ++ ID++ KC  +ED++ +FE +   D    N ++S + + G  +  
Sbjct: 263 AMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGT 322

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA------VVA 384
           L L   ML   I+P   T++ VL +   +  + HG + H   I SG   +       ++ 
Sbjct: 323 LRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK 382

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +++++MYAK GS+  +  +F ++  +D+ SWN ++MG   +G   E L++F  + E  L 
Sbjct: 383 NAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLK 442

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD +T   VL AC++ GFV +G      MK +Y V P  EHY C+ID+L +AGQL +A +
Sbjct: 443 PDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYE 502

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +  TMP +    +W ++L A  ++    L E  A+R+ +L+      Y L++  Y   GR
Sbjct: 503 LALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGR 562

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           +E ++ V+  MR+  + K  GCSWI +KN ++ F + +  H     IY  L  LT  + +
Sbjct: 563 YEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLRE 622

Query: 625 EGCV 628
            G V
Sbjct: 623 HGYV 626



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 194/398 (48%), Gaps = 46/398 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG LFK G     ++G+  ++ Y +FG                              
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGL----------------------------- 186

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++ A   F+E+P  DVV WN+M++GYA  G  +  LE F +M  + V PS FT + +L
Sbjct: 187 --MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244

Query: 155 STVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  +      +G+ IHG  ++ G   S V + NSLIDMYGK   +  A  +F  M E DI
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGYD-SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 303

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWNS++S     G  +  L     M  +G  PD  T++ V+ AC+ L  L  G+++   
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363

Query: 272 SVKVGF------LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            +  G       + + ++ +A ID+++KC  + D+  +FE++   D A  N+MI  YG +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA 384
           G+G  ALE+F  M    ++P E T   VLS+      V  G  F  + +KS +D    + 
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF-LVQMKSKYDVAPTIE 482

Query: 385 --SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
             + +++M  + G +D + E+ + +  + + V W  ++
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 199/391 (50%), Gaps = 12/391 (3%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN-MEELDIISWNSLISGC 221
           GK+IH  M+ +G  L++ +   SLI+MY K   + +A  +F +   E+++ ++N++ISG 
Sbjct: 56  GKEIHSYMLINGF-LNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGF 114

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G+ E   + +  MR  G  PD++T    I AC  +  +   K++  L  K G   + 
Sbjct: 115 ITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDV 171

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            + SA ++ + K   +E +   FE+L   D  + N M++ Y + G  E+ LE F+ M  E
Sbjct: 172 FIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDE 231

Query: 342 DIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            + P+ FT++ VLS   +   + +G   H  A+K G+DS   V++SL++MY K   I+ +
Sbjct: 232 SVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDA 291

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY- 459
            EIF  + ++D+ SWN+I+    Q G    TL + + +L  G+ PD +T+  VL AC++ 
Sbjct: 292 LEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHL 351

Query: 460 ----GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
                G    G ++ S + ++   +        +ID+  + G +  A  +   M  +   
Sbjct: 352 AALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVA 411

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQL 546
           S W  ++    ++G       +  RM ++QL
Sbjct: 412 S-WNIMIMGYGMHGYGNEALEMFSRMCEVQL 441



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 141/292 (48%), Gaps = 7/292 (2%)

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF-EQLDRWD 311
           + A    +NL KGK++ +  +  GFL++ + +++ I+++SKCN++  ++ +F +     +
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEIN 103

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSM 371
               N +IS +   GF E   E +Q M  E + P +FT  C + +     V    + H +
Sbjct: 104 VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKA--CLDVLEIKKIHGL 161

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G + +  + S+L+  Y K G ++ +   F +L  RD+V WN ++ G  Q G+    
Sbjct: 162 LFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMV 221

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACII 490
           L+ F  + +E + P R T+  VL      G ++ G ++   AMK  Y    G      +I
Sbjct: 222 LETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYD--SGVAVSNSLI 279

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           D+  +   +  A++I   M  +   S W SI+      GD   T  + +RM+
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFS-WNSIVSVHEQCGDHDGTLRLLDRML 330


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 180/627 (28%), Positives = 321/627 (51%), Gaps = 38/627 (6%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K+ V   SL+Y   ++    S    +  K IHG + + G++    + N  +++Y      
Sbjct: 290 KSRVPCDSLTYIV-ILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMY------ 342

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
                                    +K+ +++ A ++F ++ E D++SWN++ISG A  G
Sbjct: 343 -------------------------VKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA----CHGKQIHGSMIRSGLSLSNVVL 182
             + +L +F  +   G+ P  FT + +L   SS     C G+Q+H   +++G+ L + V 
Sbjct: 378 LEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFV- 436

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
             +LID+Y K G +  A  +F N +  D+ SWN+++ G   S     AL  F  M   G 
Sbjct: 437 STALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGE 496

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
             D+ T +    A   L  L +GKQ+ A+ +K+ F  +  V+S  +D++ KC  ++ + +
Sbjct: 497 KADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARK 556

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PP 361
           +F Q+   D      +IS     G  E AL  +  M    ++P E+T + ++ +  +   
Sbjct: 557 VFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTA 616

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +E G Q H+  +K     +  V +SL++MYAK G+I+ +  +F +++ R +  WN +++G
Sbjct: 617 LEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVG 676

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
           L Q+G A E L+ F E+   G+ PDR+T   VL AC++ G        F +M++ YGV P
Sbjct: 677 LAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEP 736

Query: 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             EHY+C++D L +AG + +A  + S+MPF+   +++ ++L A  + GD +  E VAE++
Sbjct: 737 EIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKL 796

Query: 542 MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG 601
             +       Y LL+  YA   +WE  V  + +M++  + K  G SWI +KN+++ F AG
Sbjct: 797 FTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAG 856

Query: 602 ELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           +  H     IY  +  +   +++EG V
Sbjct: 857 DRSHEETDLIYNKVEYVMKRIKEEGYV 883



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 219/511 (42%), Gaps = 70/511 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L   CL + S   ++ + G+  K+G     ++    +++Y++F               
Sbjct: 126 SPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKF--------------- 170

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +  A  +FD +P  DVV WN M+  Y   G  D  L +FS  
Sbjct: 171 ----------------QRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAF 214

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
              G+RP   +   +L  V     GK+               V    L        V  Y
Sbjct: 215 HRSGLRPDCVSVRTILMGV-----GKK--------------TVFERELEQ------VRAY 249

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  +F+  ++ D+  WN  +S    +G G  A+D F  M  S    D  T  ++++    
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L +L+ GKQ+    V+ G+     V ++ I+++ K   +  + R+F Q+   D    N +
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH--GSQFHSMAIKSG 376
           IS   R G  E +L LF  +LR  + P +FT++ VL +       +  G Q H+ A+K+G
Sbjct: 370 ISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAG 429

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              ++ V+++L+++Y+K G ++ +  +F   D  DL SWN +M G T +    E L +F 
Sbjct: 430 IVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS 489

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-----ACIID 491
            + E G   D+IT A    A      + +G  + +       V+    HY     + I+D
Sbjct: 490 LMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAV------VIKMRFHYDLFVISGILD 543

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           +  + G++  A  + + +P  P    W +++
Sbjct: 544 MYLKCGEMKSARKVFNQIP-SPDDVAWTTVI 573



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 141/325 (43%), Gaps = 40/325 (12%)

Query: 143 VRPSGFT---FSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           V PS      FSIL   ++ +    GK+ H  ++ SGL+    V  N+LI MY K G L+
Sbjct: 7   VSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVT-NNLITMYAKCGSLF 65

Query: 198 YAFGVF--LNMEELDIISWNSLISGCFNSG------YGELALDQFYSMRYSGYSPDEYTI 249
            A  +F      + D++++N++++   ++G          A   F  +R S      +T+
Sbjct: 66  SARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTL 125

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S +   C    +    + +   +VK+G   +  V  A +++++K  R+ ++  LF+++  
Sbjct: 126 SPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPV 185

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFH 369
            D  + NVM+  Y   G G+  L LF    R  +RP   ++  +L               
Sbjct: 186 RDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL--------------- 230

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
                 G     V    L ++ A       +T++FV  D  D+  WN  +    Q G   
Sbjct: 231 -----MGVGKKTVFERELEQVRA------YATKLFVCDDDSDVTVWNKTLSSYLQAGEGW 279

Query: 430 ETLDVFEELLEEGLPPDRITLAAVL 454
           E +D F ++++  +P D +T   +L
Sbjct: 280 EAVDCFRDMIKSRVPCDSLTYIVIL 304



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 19/205 (9%)

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE---QLDRWDYAVINVMIST 321
           GK+  A+ V  G   +  V +  I +++KC  L  + +LF+   Q DR D    N +++ 
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDR-DLVTYNAILAA 90

Query: 322 YGRYG-FGEV-----ALELFQLMLREDIRPTEFTLS-----CVLSSIPIPPVEHGSQFHS 370
           Y   G   +V     A  +F+L+ +  +  T  TLS     C+L   P            
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSP----SASEALQG 146

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            A+K G   +  VA +L+ +YAK   I  +  +F ++  RD+V WN +M    + G   E
Sbjct: 147 YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDE 206

Query: 431 TLDVFEELLEEGLPPDRITLAAVLL 455
            L +F      GL PD +++  +L+
Sbjct: 207 VLGLFSAFHRSGLRPDCVSVRTILM 231


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 182/584 (31%), Positives = 306/584 (52%), Gaps = 14/584 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI-P 77
           S ++  C      +  + IH    +   +    L N  LD+Y + G   D  ++FD I  
Sbjct: 109 SVVLKACGLVGEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFL 168

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           + N  SWN  + G  K   ++ A+ +F+++P+ +VVSWN++I+G A  G S  AL+   K
Sbjct: 169 RANSTSWNTMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENG-SSRALQFVCK 227

Query: 138 MQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M  +G++   FTF   L T S A     GKQIH  +++SGL  S   + ++L+DMY    
Sbjct: 228 MHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAV-SALVDMYSNCN 286

Query: 195 VLYYAFGVFLNMEEL------DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
            L  A  +F             ++ WNS++SG         A++    + +SG S D YT
Sbjct: 287 GLDDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYT 346

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           +S  +  C  L N+  G QV AL V  G   + +V S  +DL++K   ++D+ +LF +L 
Sbjct: 347 LSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLP 406

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
           + D    + ++    +     +AL LF+ M+   +   ++ +S VL     +  +  G Q
Sbjct: 407 KKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQ 466

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H+  IK G+++  V  ++L++MY+K G ++    +F  +  RD+V W  I++G  QNGR
Sbjct: 467 VHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCWTGIIVGCAQNGR 526

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           A E L++F ++++ GL P+ +T   VL AC + G V +   +F  MK ++ + P  EHY 
Sbjct: 527 ANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYY 586

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C++DLLCQAG   +   + + MPF+P  +IW S+L A   + +  L   +AE ++     
Sbjct: 587 CMVDLLCQAGYFKEVEKLIAEMPFKPDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPN 646

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
            P  Y +L+ AY   G W+++ +V++  +K G+ K  G SWI I
Sbjct: 647 DPSIYVMLSNAYGTLGMWDSLSQVREAAKKLGV-KAAGTSWIEI 689



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 223/487 (45%), Gaps = 76/487 (15%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L +    I  C   K+    K+ H HL K G++ + Y+    + +Y+ F    D      
Sbjct: 3   LKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLID------ 56

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                    A K+FDE+P  ++V+W +M+S Y S G    A+++
Sbjct: 57  -------------------------AYKLFDEMPVKNIVTWTTMVSAYTSNGKPREAIKL 91

Query: 135 FSKM-QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +++M   +   P+GF +S++L     V     G+ IH    R  L   ++VL N+L+DMY
Sbjct: 92  YTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFSRENLDY-DIVLLNALLDMY 150

Query: 191 GKLGVL-------------------------YY-------AFGVFLNMEELDIISWNSLI 218
            K G L                         Y+       A  +F  M + +++SWN++I
Sbjct: 151 VKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTII 210

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G   +G    AL     M   G   D++T    +  C+    L  GKQ+    +K G  
Sbjct: 211 AGLAENGSSR-ALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLE 269

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI------NVMISTYGRYGFGEVAL 332
           S+   +SA +D++S CN L+D++RLF+Q      ++       N M+S Y  +     A+
Sbjct: 270 SSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAV 329

Query: 333 ELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            +   +         +TLS  L   I +  V  G Q H++ + SG + + VV S L+++Y
Sbjct: 330 NMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLY 389

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G++  + ++F +L K+D+V+W+ ++MG  +    +  L +F +++  G+  D+  ++
Sbjct: 390 AKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVS 449

Query: 452 AVLLACN 458
            VL  C+
Sbjct: 450 NVLKVCS 456



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 35/256 (13%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   I   I  C +++ L +GK   +  +K G+  N  +    + +++    L D+ +LF
Sbjct: 2   DLKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLF 61

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSCVLSSIP-IPPV 362
           +++   +      M+S Y   G    A++L+  ML      P  F  S VL +   +  +
Sbjct: 62  DEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEI 121

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS-------------------------- 396
           E G   H    +   D + V+ ++L++MY K G                           
Sbjct: 122 ELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISG 181

Query: 397 ------IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
                 ++ +  +F ++  R++VSWNTI+ GL +NG ++  L    ++  EG+  D+ T 
Sbjct: 182 YFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENG-SSRALQFVCKMHREGIKLDKFTF 240

Query: 451 AAVLLACNYGGFVDKG 466
              L  C+Y GF+  G
Sbjct: 241 PCALKTCSYAGFLVAG 256



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 107/226 (47%), Gaps = 12/226 (5%)

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +  ++ G  FHS  IK+G+  N  +A +L+ MYA    +  + ++F ++  +++V+W T+
Sbjct: 16  VKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVTWTTM 75

Query: 419 MMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLV---FSAMK 474
           +   T NG+  E + ++  +L+ +   P+    + VL AC   G ++ G L+   FS   
Sbjct: 76  VSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFSREN 135

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
            +Y ++        ++D+  + G L  A  +   +  +   + W +++      G V+  
Sbjct: 136 LDYDIVL----LNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEA 191

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
            N+  +M D  + S   ++ +    A  G   A+  V K M + GI
Sbjct: 192 VNLFNQMPDRNVVS---WNTIIAGLAENGSSRALQFVCK-MHREGI 233


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 314/595 (52%), Gaps = 34/595 (5%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y R G  +   +LFDE+P+++ +SWN+ ++G +++ NL  A ++F+ +PE DV SWN+M+
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164

Query: 120 SGYASCGYSDYALEMFSKMQLQG-----------VRPSGFTFSILL-------STVSSAC 161
           SGYA  G  D A  +F +M  +            V+ S    + +L       + VS  C
Sbjct: 165 SGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNC 224

Query: 162 -------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
                    K +        +++ +VV  N++I  Y + G +  A  +F      D+ +W
Sbjct: 225 LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTW 284

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            +++SG   +   E A + F  M       +E + + ++    +   ++  K++F     
Sbjct: 285 TAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELF----D 336

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           V    N    +  I  +++C ++ ++  LF+++ + D      MI+ Y + G    AL L
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRL 396

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M RE  R    + S  LS+   +  +E G Q H   +K G+++   V ++L+ MY K
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            GSI+ + ++F ++  +D+VSWNT++ G +++G     L  FE +  EGL PD  T+ AV
Sbjct: 457 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++ G VDKG   F  M ++YGVMP  +HYAC++DLL +AG L  A ++   MPF+P
Sbjct: 517 LSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
             +IW ++L AS ++G+ +L E  A+++  ++  +   Y LL+  YA  GRW  + +++ 
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            MR  G+ KV G SWI I+N+ +TF+ G+  H    +I+  L  L   M+  G V
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYV 691



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/456 (21%), Positives = 208/456 (45%), Gaps = 43/456 (9%)

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           WN+ +   +++   + AL+VF  +P    VS+N MISGY   G  + A ++F +M  + +
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126

Query: 144 RPSGFTFSILLST-VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
                ++++++   V +   GK      I   +   +V   N+++  Y + G +  A  V
Sbjct: 127 ----VSWNVMIKGYVRNRNLGKARELFEI---MPERDVCSWNTMLSGYAQNGCVDDARSV 179

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M E + +SWN+L+S    +   E A   F S           + + ++    K + +
Sbjct: 180 FDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLGGFVKKKKI 235

Query: 263 DKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
            + +Q F +++V+     N+I+       +++  +++++ +LF++    D      M+S 
Sbjct: 236 VEARQFFDSMNVRDVVSWNTIITG-----YAQSGKIDEARQLFDESPVQDVFTWTAMVSG 290

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSMAIKSGFDS 379
           Y +    E A ELF  M   +    E + + +L+  +    +E   + F  M  +     
Sbjct: 291 YIQNRMVEEARELFDKMPERN----EVSWNAMLAGYVQGERMEMAKELFDVMPCR----- 341

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N    ++++  YA+ G I  +  +F K+ KRD VSW  ++ G +Q+G + E L +F ++ 
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG-VMPGEEHYACIID-----LL 493
            EG   +R + ++ L  C         ++     K+ +G ++ G     C +      + 
Sbjct: 402 REGGRLNRSSFSSALSTC-------ADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 454

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           C+ G + +A D+   M  +   S W +++   + +G
Sbjct: 455 CKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHG 489



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 41/237 (17%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
             +N++S S     +  C    + +  K +HG L K G+    ++GN  L +Y + G+ +
Sbjct: 405 GRLNRSSFS---SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           +   LF E+  K+ +SW                               N+MI+GY+  G+
Sbjct: 462 EANDLFKEMAGKDIVSW-------------------------------NTMIAGYSRHGF 490

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGN 184
            + AL  F  M+ +G++P   T   +LS  S       G+Q   +M +    + N     
Sbjct: 491 GEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYA 550

Query: 185 SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
            ++D+ G+ G+L  A  +  NM  E D   W +L+       N+   E A D+ ++M
Sbjct: 551 CMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAM 607


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 316/612 (51%), Gaps = 38/612 (6%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ ++  C S       + IH  + K GF+ + ++G   + +Y++ G             
Sbjct: 171 CTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGF------------ 218

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                               D A KVFD +   D+   N MI  Y   G    A+E+F  
Sbjct: 219 -------------------FDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKN 259

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +   G  P+ +TF+ ++ST +       GKQ+ G   + G  LS   +GN++I MYG  G
Sbjct: 260 LLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGF-LSETSVGNAIITMYGNSG 318

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVI 253
           +   A  +F +M E ++ISW +LISG   SGYG+ A+D F  +    G + D   ++ ++
Sbjct: 319 MPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAIL 378

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           + C+   NL+ G Q+    +K+G   +  V +A +DL++KC +L+ +  +F+ L     A
Sbjct: 379 DCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIA 438

Query: 314 VINVMISTY-GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
             N +++ +    G  E  + LF  +    ++P   T S +LS +     +E G  FH+ 
Sbjct: 439 SFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAY 498

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            +K+GFD+N  VA+S++ MYAK GSI+ + ++F  ++ RD +SWN ++     +G+A ++
Sbjct: 499 TVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKS 558

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L +FEE+  +G  PD  T+ A+L AC Y G    G+ +F+ M+ +YG+ P  EHYAC+ D
Sbjct: 559 LFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMAD 618

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG L +A+DI    PF     +W +++    ++G++   +  ++ ++DL       
Sbjct: 619 LLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGS 678

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y L++  YA     +   +V+KVM      K  G SWI I N+++ F A +  H   ++I
Sbjct: 679 YILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHFVASDKDHPESREI 738

Query: 612 YLVLRLLTWEME 623
           Y  L LLT EM+
Sbjct: 739 YTRLELLTDEMK 750



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 249/558 (44%), Gaps = 49/558 (8%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +LI   +  + F   + +H +L K G    T+ GN  L+LY +F                
Sbjct: 72  ELIKISIGSRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKF---------------- 115

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                          + LD A KVFD +   + ++W S+I GY        A  +   M 
Sbjct: 116 ---------------NRLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMH 160

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G   +  T +++L   SS      G+QIH  +I+SG    NV +G SLI MY K G  
Sbjct: 161 KFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFD-ENVFVGTSLIAMYTKSGFF 219

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF +M   DI   N +I     +G G  A++ F ++   G+ P +YT + +I+ C
Sbjct: 220 DVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTC 279

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                +++GKQ+  L+ K GFLS + V +A I ++      +++ R+F  +   +     
Sbjct: 280 NGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWT 339

Query: 317 VMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            +IS Y R G+G+ A++ F L L ++  I      L+ +L        +E G Q H   +
Sbjct: 340 ALISGYSRSGYGKKAVDAF-LGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVM 398

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG-LTQNGRAAETL 432
           K G   +  VA++L+++YAK   + S+  +F  L  + + S+N I+ G L  +G   + +
Sbjct: 399 KLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPM 458

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +F +L   G+ PD +T + +L        ++KG   F A   + G          +I +
Sbjct: 459 ILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGR-SFHAYTVKTGFDTNISVANSVISM 517

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK----LTENVAERMMDLQLPS 548
             + G +  A  + + M  +   S W +++ A A++G  +    L E +  +  D   P 
Sbjct: 518 YAKCGSIEDAHQMFNIMNCRDSIS-WNALISAYALHGQAQKSLFLFEEMKRKGFD---PD 573

Query: 549 PLPYSLLTQAYAMRGRWE 566
                 + QA    G W+
Sbjct: 574 EFTILAILQACTYSGLWK 591


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 299/548 (54%), Gaps = 6/548 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ +    K + +    K+FD++   +++SW +MISGY    +   A+++F +M   G +
Sbjct: 177 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 236

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P GF  + +L++  S      G+Q+H   I++ L  SN  + N LIDMY K  +L  A  
Sbjct: 237 PDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLE-SNEFVKNGLIDMYAKSNLLXDAKK 295

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E ++IS+N++I G  +      AL+ F+ MR   + P   T   ++     L  
Sbjct: 296 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 355

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+  KQ+  L +K G   +    SA ID++SKC+ ++D+  +FE+++  D  V N M   
Sbjct: 356 LELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 415

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y ++   E AL+L+  +     +P EFT + ++++   +  + HG QFH+  +K G D  
Sbjct: 416 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 475

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V ++L++MYAK GSI+ + ++F     RD+V WN+++    Q+G A E L +F E+++
Sbjct: 476 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 535

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           EG+ P+ +T  AVL AC++ G V+ G+  F++M   +G+ PG EHYAC++ LL ++G+L 
Sbjct: 536 EGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLF 594

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A +    MP +P   +W S+L A  I G+V+L +  AE  +         Y LL+  +A
Sbjct: 595 EAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 654

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
            +G W  + +V+  M  + + K  G SWI + N++  F A    H     I  VL +L  
Sbjct: 655 SKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDILIQ 714

Query: 621 EMEDEGCV 628
            ++  G V
Sbjct: 715 HIKGAGYV 722



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 213/448 (47%), Gaps = 44/448 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C      +    +HG + + GF+   Y+G   +D YS+ G              
Sbjct: 41  ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG-------------- 86

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            B++ A  VFD++ E   V+W ++I+GY  CG S  +LE+F++M
Sbjct: 87  -----------------BIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM 129

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   V P  +    ++S+V SAC        GKQIH  ++R G  + +V + N LID Y 
Sbjct: 130 RETNVVPDRY----VVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM-DVSVVNVLIDFYT 184

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +     +F  M   +IISW ++ISG   + +   A+  F  M   G+ PD +  + 
Sbjct: 185 KCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTS 244

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+ +C  L  L++G+QV A ++K    SN  V +  ID+++K N L D+ ++F+ +   +
Sbjct: 245 VLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQN 304

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS 370
               N MI  Y        ALELF  M      P+  T   +L  S  +  +E   Q H 
Sbjct: 305 VISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHG 364

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + IK G   +    S+L+++Y+K   +  +  +F +++++D+V WN +  G TQ+    E
Sbjct: 365 LIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEE 424

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACN 458
            L ++  L      P+  T AA++ A +
Sbjct: 425 ALKLYSTLQFSRQKPNEFTFAALITAAS 452



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 187/338 (55%), Gaps = 14/338 (4%)

Query: 126 GYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSL 177
           GYS+ AL +F  +Q + G  P+ F    +L++V  AC        G Q+HG ++RSG   
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEF----VLASVIRACTQLGVVEKGAQLHGFVVRSGFD- 69

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            +V +G SLID Y K G +  A  VF  + E   ++W ++I+G    G   ++L+ F  M
Sbjct: 70  QDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQM 129

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R +   PD Y +S V++AC+ L  L+ GKQ+ A  ++ G   +  V++  ID ++KCNR+
Sbjct: 130 RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 189

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           +   +LF+Q+   +      MIS Y +  F   A++LF  M R   +P  F  + VL+S 
Sbjct: 190 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 249

Query: 358 -PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G Q H+  IK+  +SN  V + L++MYAK+  +  + ++F  + +++++S+N
Sbjct: 250 GSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYN 309

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            ++ G +   + +E L++F E+     PP  +T  ++L
Sbjct: 310 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 347



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 224/459 (48%), Gaps = 51/459 (11%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ ++  C S ++ +  + +H +  K    ++ ++ N  +D+Y+                
Sbjct: 242 CTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYA---------------- 285

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                          KS+ L  A KVFD + E +V+S+N+MI GY+S      ALE+F +
Sbjct: 286 ---------------KSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHE 330

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+++   PS  TF  LL   +S       KQIHG +I+ G+SL ++  G++LID+Y K  
Sbjct: 331 MRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSL-DLFAGSALIDVYSKCS 389

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  M E DI+ WN++  G       E AL  + ++++S   P+E+T + +I 
Sbjct: 390 YVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALIT 449

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A + L +L  G+Q     VK+G      V +A +D+++KC  +E++ ++F      D   
Sbjct: 450 AASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVC 509

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSM- 371
            N MIST+ ++G  E AL +F+ M++E I+P   T   VLS+      VE G + F+SM 
Sbjct: 510 WNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMP 569

Query: 372 --AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRA 428
              IK G +  A V S L     ++G +  + E   K+  +   + W +++       R 
Sbjct: 570 GFGIKPGTEHYACVVSLL----GRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC----RI 621

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
           A  +++ +   E  +  D     + +L  N   F  KGM
Sbjct: 622 AGNVELGKYAAEMAISTDPKDSGSYILLSNI--FASKGM 658



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 132/251 (52%), Gaps = 2/251 (0%)

Query: 223 NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
           + GY E AL  F  + R SG  P+E+ ++ VI ACT+L  ++KG Q+    V+ GF  + 
Sbjct: 13  DEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDV 72

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V ++ ID +SK   +E +  +F+QL          +I+ Y + G   V+LELF  M   
Sbjct: 73  YVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRET 132

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           ++ P  + +S VLS+  +   +E G Q H+  ++ G + +  V + L++ Y K   + + 
Sbjct: 133 NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAG 192

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F ++  ++++SW T++ G  QN    E + +F E+   G  PD     +VL +C   
Sbjct: 193 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSL 252

Query: 461 GFVDKGMLVFS 471
             +++G  V +
Sbjct: 253 EALEQGRQVHA 263



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 97/170 (57%), Gaps = 7/170 (4%)

Query: 326 GFGEVALELF-QLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVV 383
           G+ E AL +F  L  +    P EF L+ V+ +   +  VE G+Q H   ++SGFD +  V
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +SL++ Y+K G I+ +  +F +L ++  V+W TI+ G T+ GR+  +L++F ++ E  +
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            PDR  +++VL AC+   F++ G  + +     Y +  G E    ++++L
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHA-----YVLRRGTEMDVSVVNVL 179


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/633 (29%), Positives = 324/633 (51%), Gaps = 40/633 (6%)

Query: 1    MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
            M  Y+++A +     ++ S ++  C++  S D  + +H    K G +A  ++ N  LD+Y
Sbjct: 412  MFQYMRRADLEADDFTFVS-VLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMY 470

Query: 61   SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
            S+ G                                +D A  +F  IP  D VSWN++I 
Sbjct: 471  SKLGA-------------------------------IDVAKALFSLIPVKDSVSWNALIV 499

Query: 121  GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSL 177
            G A       A+ M  +M+  G+     +F+  ++  S+      GKQIH + I+  +  
Sbjct: 500  GLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVC- 558

Query: 178  SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            SN  +G+SLID+Y K G +  +  V  +++   I+  N+LI+G   +   + A++ F  +
Sbjct: 559  SNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQV 618

Query: 238  RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNR 296
               G+ P  +T + +++ CT+  +   GKQV   ++K   L+    L  + + ++ KC  
Sbjct: 619  LKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKL 678

Query: 297  LEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            LED+ +L E++ D  +       IS Y + G+   +L +F  M   D+R  E T + VL 
Sbjct: 679  LEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLK 738

Query: 356  SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLV 413
            +   +  +  G + H + +KSGF S     S+LM+MY+K G + SS EIF +L  R +++
Sbjct: 739  ACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIM 798

Query: 414  SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
             WN++++G  +NG A E L +F+++ E  + PD +TL  VL+AC++ G + +G+  F +M
Sbjct: 799  PWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSM 858

Query: 474  KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
             + YG++P  +HYAC+IDLL + G L KA ++   +PF+    IW + L A  ++ D + 
Sbjct: 859  SQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEER 918

Query: 534  TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
             +  A+++++++  S   Y  L+  +A  G W      ++ MR+ G+ K  GCSWI + N
Sbjct: 919  GKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGN 978

Query: 594  RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +   F   +  H     IY +L  LT  M  +G
Sbjct: 979  KQSVFVVQDTHHPDALSIYKMLDDLTGMMNKDG 1011



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 228/477 (47%), Gaps = 40/477 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    + +  + +H  + K GF +  +     +D+Y++ G  DD  ++FD I   +
Sbjct: 163 VLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPD 222

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPE----PD------------------------- 111
            I W   + G  +      AL +F  + +    PD                         
Sbjct: 223 TICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLK 282

Query: 112 ------VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---H 162
                  V+WN++I+ Y+  G       ++  M+ QG+ P+  TF+ +LS  ++      
Sbjct: 283 RIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDE 342

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+QIH + ++ GL  +NV +G+SLI++Y K G +  A  VF    E +I+ WN+++ G  
Sbjct: 343 GRQIHATAVKHGLD-ANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFV 401

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +   E  +  F  MR +    D++T   V+ AC  L +LD G+QV  +++K G  ++  
Sbjct: 402 QNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLF 461

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D++SK   ++ +  LF  +   D    N +I           A+ + + M    
Sbjct: 462 VANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYG 521

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I   E + +  +++   I  +E G Q HS +IK    SN  V SSL+++Y+K G ++SS 
Sbjct: 522 IALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSR 581

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           ++   +D   +V  N ++ GL QN R  E +++F+++L++G  P   T  ++L  C 
Sbjct: 582 KVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 262/536 (48%), Gaps = 43/536 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++    +  +FD  + IH    K G +A+ ++G+  ++LY + G              
Sbjct: 328 ASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHG-------------- 373

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
             CIS                A KVFD   E ++V WN+++ G+      +  ++MF  M
Sbjct: 374 --CIS---------------DAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYM 416

Query: 139 QLQGVRPSGFTF-SILLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   +    FTF S+L + ++  S   G+Q+H   I++G+  +++ + N+++DMY KLG 
Sbjct: 417 RRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMD-ADLFVANAMLDMYSKLGA 475

Query: 196 LYYAFGVFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +  A  +F  +   D +SWN+LI G   N   GE A++    M++ G + DE + +  IN
Sbjct: 476 IDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGE-AINMLKRMKFYGIALDEVSFATAIN 534

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+ +  ++ GKQ+ + S+K    SN  V S+ IDL+SK   +E S ++   +D      
Sbjct: 535 ACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVP 594

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS--SIPIPPVEHGSQFHSMA 372
           IN +I+   +    + A+ELFQ +L++  +P+ FT + +LS  + P+  V  G Q H   
Sbjct: 595 INALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVI-GKQVHCYT 653

Query: 373 IKSG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAE 430
           +KS   + +  +  SL+ +Y K   ++ + ++  ++ D ++LV W   + G  QNG + +
Sbjct: 654 LKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQ 713

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           +L +F  +    +  D  T  +VL AC+    +  G  +   + +  G +  E   + ++
Sbjct: 714 SLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKS-GFVSYETATSALM 772

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           D+  + G +  + +I   +  +     W S++   A  G       + ++M + Q+
Sbjct: 773 DMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQI 828



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 150/314 (47%), Gaps = 39/314 (12%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL--NMEELDIISWNSLISGCFN 223
           +H  ++R GL L    LG++L+D+YG+ G + YA+              + +S++S    
Sbjct: 75  LHARILRLGLPLRGR-LGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHAR 133

Query: 224 SGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           SG     LD F  +R S G +PD++ I++V++AC++L  L+ G+QV    +K GF S+  
Sbjct: 134 SGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVF 193

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
             +  +D+++KC  ++D+ R+F+ +   D      MI+ Y R G  + AL LF  M +  
Sbjct: 194 CQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMG 253

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P + T   ++S++                                  A  G +  +  
Sbjct: 254 SVPDQVTCVTIISTL----------------------------------ASMGRLGDART 279

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL-LACNYGG 461
           +  ++     V+WN ++   +Q+G  +E   +++++ ++GL P R T A++L  A N   
Sbjct: 280 LLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTA 339

Query: 462 FVDKGMLVFSAMKE 475
           F +   +  +A+K 
Sbjct: 340 FDEGRQIHATAVKH 353


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/524 (32%), Positives = 294/524 (56%), Gaps = 5/524 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A K+FD +P+ D+V WN MI GY   G+ D A  +F++M   G++P   TF+ 
Sbjct: 158 KGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTS 217

Query: 153 LLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L ++   SS    K+IHG ++R G+ L +V L ++LID+Y K      A  +F    + 
Sbjct: 218 FLPSLAESSSLKQIKEIHGYIVRHGVIL-DVYLNSALIDLYFKCRDAVMACKMFNLSTKF 276

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DI+ + ++ISG   +G  + AL+ F  +      P+  T S ++ AC  L  +  G+++ 
Sbjct: 277 DIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELH 336

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K        V SA +++++KC RL+ +  +F ++   D    N +I+++ + G  E
Sbjct: 337 GYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPE 396

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+ LF+ M  E ++    T+S  LS+   IP + +G + H   IK  F+S+    S+L+
Sbjct: 397 EAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALI 456

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYAK G ++ +  +F  + +++ V+WN+I+     +G  A++L +F  +LEEG+ PD I
Sbjct: 457 NMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHI 516

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   +L +C + G V+ G+  F  M EEYG+    EHYAC+ DL  +AG L +A ++ ++
Sbjct: 517 TFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITS 576

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF P  S+W ++L A  ++G+V+L E  +  ++DL+  +   Y LLT   A  G+W ++
Sbjct: 577 MPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSV 636

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            +++ +M++ G+ KV GCSWI + N    F A +  H    +IY
Sbjct: 637 HKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSHPESPQIY 680



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 273/568 (48%), Gaps = 51/568 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C    +    K I   + ++GF+   ++ +  + LY+  G  +D            
Sbjct: 16  VIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIED------------ 63

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A + FD++ + D V WN MI+GY  CG SD A+++F  M  
Sbjct: 64  -------------------ARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMS 104

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
              +P   TF+ +LS   S     +G+Q+HG ++RSGL    +V GN+L+ +Y K   L 
Sbjct: 105 SEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLV-GNTLVTVYSKGRQLG 163

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M ++D++ WN +I G   +G+ + A   F  M  +G  PD  T +  + +  
Sbjct: 164 DARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLA 223

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +  +L + K++    V+ G + +  + SA IDL+ KC     + ++F    ++D  +   
Sbjct: 224 ESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTA 283

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y   G  + ALE+F+ +L++ + P   T S +L +   +  ++ G + H   IK+ 
Sbjct: 284 MISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNE 343

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            +    V S++M MYAK G +D +  IF ++  +D + WN+I+   +Q+G+  E + +F 
Sbjct: 344 LEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFR 403

Query: 437 ELLEEGLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           ++  EG+  D +T++A L AC      +YG  +  G ++  A + +   M      + +I
Sbjct: 404 QMGMEGVKYDCVTVSAALSACANIPALHYGKEI-HGFMIKGAFESDLFDM------SALI 456

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSP 549
           ++  + G+L  A  + + M  +   + W SI+ A   +G +  +  +   M++  + P  
Sbjct: 457 NMYAKCGKLNIARLVFNLMQEKNEVA-WNSIIAAYGYHGYLADSLALFHNMLEEGIQPDH 515

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           + +  +  +    G+ E  VR  + M +
Sbjct: 516 ITFLTILSSCGHAGQVEDGVRYFRCMTE 543



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 156/320 (48%), Gaps = 5/320 (1%)

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           GV P  +TF  ++   +   +   GK I   ++  G  L ++ + +SLI +Y   G +  
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDL-DMFVASSLIKLYADNGCIED 63

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A   F  M + D + WN +I+G    G  + A+  F  M  S   PD  T + V++    
Sbjct: 64  ARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCS 123

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
              ++ G+Q+  L V+ G     +V +  + ++SK  +L D+ +LF+ + + D  V N M
Sbjct: 124 EAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRM 183

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
           I  Y + GF + A  LF  M+   I+P   T +  L S+     ++   + H   ++ G 
Sbjct: 184 IGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGV 243

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
             +  + S+L+++Y K      + ++F    K D+V +  ++ G   NG   + L++F  
Sbjct: 244 ILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRW 303

Query: 438 LLEEGLPPDRITLAAVLLAC 457
           LL++ + P+ +T +++L AC
Sbjct: 304 LLQKKMIPNALTFSSILPAC 323



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 41/219 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C +  +  + K IHG + K  F +  +  +  +++Y++ G  +    +F+ + +
Sbjct: 418 SAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQE 477

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                                V+WNS+I+ Y   GY   +L +F  M
Sbjct: 478 KN-------------------------------EVAWNSIIAAYGYHGYLADSLALFHNM 506

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGS------MIRSGLSLSNVVLGNSLIDMYGK 192
             +G++P   TF   L+ +SS  H  Q+         M       + +     + D++G+
Sbjct: 507 LEEGIQPDHITF---LTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGR 563

Query: 193 LGVLYYAFGVFLNMEELDIIS-WNSLISGCFNSGYGELA 230
            G L  AF V  +M      S W +L+  C   G  ELA
Sbjct: 564 AGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELA 602


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 187/612 (30%), Positives = 308/612 (50%), Gaps = 37/612 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  CL  K  +  K IH ++ + G      + N  +D Y                  
Sbjct: 246 SSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFY------------------ 287

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K   +    K+FD + + +VVSW ++I+G     +   AL++F +M
Sbjct: 288 -------------FKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEM 334

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G  P  F  + +L++  S      G+Q+H   I+  +   + V  N LIDMY K   
Sbjct: 335 ARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFV-KNGLIDMYAKCDS 393

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M  +D++S+N++I G         ALD F  MR S  SP       ++  
Sbjct: 394 LTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGV 453

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L +L+   Q+  L +K G   +    SA ID++SKC+R+ D+  +FE++   D  V 
Sbjct: 454 SASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVW 513

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             M S Y +    E +L+L++ +    ++P EFT + V+++   I  + HG QFH+  IK
Sbjct: 514 TAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIK 573

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GFD +  VA++L++MYAK+GSI+ + + F+  + +D   WN+++    Q+G A + L V
Sbjct: 574 MGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQV 633

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FE+++ EGL P+ +T   VL AC++ G +D G   F +M  ++G+ PG EHY C++ LL 
Sbjct: 634 FEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMVSLLG 692

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A +    MP +    +W S+L A  + G+V+L    AE  +         Y L
Sbjct: 693 RAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVL 752

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A +G W  + R+++ M  +G+ K  GCSWI + N I+ F A +  H     I LV
Sbjct: 753 LSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLV 812

Query: 615 LRLLTWEMEDEG 626
           L  L  +++  G
Sbjct: 813 LDNLLLQIKGFG 824



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 141/533 (26%), Positives = 246/533 (46%), Gaps = 48/533 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C  F   + A  IHG + K G+    Y+    +D Y++    DD   LFD +  
Sbjct: 145 ASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQV 204

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K   +                               W ++I+GY+  G S  +L++F +M
Sbjct: 205 KTSFT-------------------------------WTTIIAGYSKQGRSQVSLKLFDQM 233

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   V P  +    +LS+V SAC        GKQIH  ++RSG+ + +V + N  ID Y 
Sbjct: 234 KEGHVCPDKY----VLSSVLSACLMLKFLEGGKQIHCYVLRSGIVM-DVSMVNGFIDFYF 288

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +     +F  M + +++SW ++I+GC  + +   ALD F  M   G++PD +  + 
Sbjct: 289 KCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTS 348

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+N+C  L  L+KG+QV A ++KV   ++  V +  ID+++KC+ L D+ ++F  +   D
Sbjct: 349 VLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAID 408

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS 370
               N MI  Y R      AL+LF+ M      PT      +L  S  +  +E  +Q H 
Sbjct: 409 LVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHG 468

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + IK G   +    S+L+++Y+K   +  +  +F ++  +D+V W  +  G TQ     E
Sbjct: 469 LIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEE 528

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           +L +++ L    L P+  T AAV+ A +    +  G   F     + G          ++
Sbjct: 529 SLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQ-FHNQVIKMGFDDDPFVANTLV 587

Query: 491 DLLCQAGQLGKAID-ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           D+  ++G + +A     ST      C  W S++   A +G+ +    V E M+
Sbjct: 588 DMYAKSGSIEEAHKAFISTNWKDTAC--WNSMIATYAQHGEAEKALQVFEDMI 638



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 191/363 (52%), Gaps = 14/363 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGV 143
           N  L    K + ++ A K+FD +   ++V+W+SM+S Y    +   AL +F + M+    
Sbjct: 78  NTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNE 137

Query: 144 RPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           +P+ +    +L++V  AC          QIHG +++ G  + +V +  SLID Y K   +
Sbjct: 138 KPNEY----ILASVVRACTQFGGLNPALQIHGLVVKGGY-VQDVYVCTSLIDFYTKHACI 192

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  ++     +W ++I+G    G  +++L  F  M+     PD+Y +S V++AC
Sbjct: 193 DDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSAC 252

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             L+ L+ GKQ+    ++ G + +  +++  ID + KC++++   +LF+++   +     
Sbjct: 253 LMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWT 312

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKS 375
            +I+   +  F   AL+LF  M R    P  F  + VL+S   +  +E G Q H+ AIK 
Sbjct: 313 TVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKV 372

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             D++  V + L++MYAK  S+  + ++F  +   DLVS+N ++ G ++  +  E LD+F
Sbjct: 373 NIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLF 432

Query: 436 EEL 438
            E+
Sbjct: 433 REM 435



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 168/330 (50%), Gaps = 3/330 (0%)

Query: 144 RPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           R  G   + LL +    C  K+IH  ++  G    ++ L N+L+  Y KL ++ +A  +F
Sbjct: 39  RKIGRELANLLQSPHIPC-CKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLF 97

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKLRNL 262
             M   ++++W+S++S   +  +   AL  F   MR     P+EY ++ V+ ACT+   L
Sbjct: 98  DTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGL 157

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           +   Q+  L VK G++ +  V ++ ID ++K   ++D+  LF+ L          +I+ Y
Sbjct: 158 NPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGY 217

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNA 381
            + G  +V+L+LF  M    + P ++ LS VLS+ + +  +E G Q H   ++SG   + 
Sbjct: 218 SKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDV 277

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            + +  ++ Y K   +    ++F ++  +++VSW T++ G  QN    + LD+F E+   
Sbjct: 278 SMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARM 337

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           G  PD     +VL +C     ++KG  V +
Sbjct: 338 GWNPDAFGCTSVLNSCGSLVALEKGRQVHA 367



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 194/418 (46%), Gaps = 45/418 (10%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ +++ C S  + +  + +H +  K+  +   ++ N  +D+Y++  +  D  ++F+ + 
Sbjct: 346 CTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMA 405

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
             + +S+N  + G  + D L                           C     AL++F +
Sbjct: 406 AIDLVSYNAMIEGYSRQDKL---------------------------CE----ALDLFRE 434

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+L    P+   F  LL   +S  H     QIHG +I+ G+SL     G++LID+Y K  
Sbjct: 435 MRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFA-GSALIDVYSKCS 493

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  +++ DI+ W ++ SG       E +L  +  ++ S   P+E+T + VI 
Sbjct: 494 RVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVIT 553

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A + + +L  G+Q     +K+GF  +  V +  +D+++K   +E++ + F   +  D A 
Sbjct: 554 AASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTAC 613

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-----EHGSQFH 369
            N MI+TY ++G  E AL++F+ M+ E ++P   T   VLS+     +     +H     
Sbjct: 614 WNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMS 673

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNG 426
              I+ G +    + S L     + G +  + E   K+  K+  V W +++     +G
Sbjct: 674 QFGIEPGIEHYVCMVSLL----GRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSG 727


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/608 (29%), Positives = 307/608 (50%), Gaps = 46/608 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +      +H H  K  F +   +G   LD+Y++ G+  D  ++F+ +P+ +   +
Sbjct: 287 CAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCY 346

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G ++++    AL+ F                                    Q + 
Sbjct: 347 NAIIVGCVRNEKGFEALQFF------------------------------------QLLL 370

Query: 145 PSGFTFS-ILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            SG  F+ I LS   SAC        G+Q+H   ++S L  SN+ + NS++DMYGK   L
Sbjct: 371 KSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLR-SNICVANSILDMYGKCEAL 429

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  ME  D +SWN++I+    +G  E  L+ F SM      PD++T   V+ AC
Sbjct: 430 SEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKAC 489

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           +  + L+ G ++    +K G   +S V  A ID++ KC  +E++ ++ +++++      N
Sbjct: 490 SSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWN 549

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            +I+ +      E A   F  ML+  ++P  FT + VL +   +  V  G Q H   IK 
Sbjct: 550 AIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKL 609

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
              S+  + S+L++MY+K G++  S  +F K   +D V+WN ++ G  Q+G   E L  F
Sbjct: 610 ELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYF 669

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E +  E + P+  T  ++L AC + GF+DKG+  F+AM  EYG+ P  EHY+C+ID++ +
Sbjct: 670 ERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGR 729

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           +G++ +A+ +   MPF+    IW ++L    I+G++++ E     ++ L+        LL
Sbjct: 730 SGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILL 789

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  G W  +  ++K+MR N + K  GCSWI +K+ ++ F  G   H   ++IY +L
Sbjct: 790 SNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPRYEEIYKIL 849

Query: 616 RLLTWEME 623
            +L  EM+
Sbjct: 850 SVLLDEMK 857



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 277/548 (50%), Gaps = 9/548 (1%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C  + S    K  H  +   GF    Y+ N  + +Y R    +   ++F+++ Q
Sbjct: 47  SHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQ 106

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ IS+N  + G   +  ++ A + F + P+ DVVSWNSM+SG+   G    ++++F  M
Sbjct: 107 RDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDM 166

Query: 139 -QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            + + V     TF+++L   S +     G Q+HG ++R G    +VV G++L+DMY K  
Sbjct: 167 GRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGF-YKDVVTGSALLDMYAKCK 225

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  +  +F  +   + + W+++I+GC  +    L L+ F  M+  G    +   + V  
Sbjct: 226 RLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFR 285

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +C  L  L  G Q+ A ++K  F S+  V +AT+D+++KC  L D+ R+F  L +     
Sbjct: 286 SCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQC 345

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N +I    R   G  AL+ FQL+L+  +   E +LS   S+   I     G Q HS+++
Sbjct: 346 YNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSV 405

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           KS   SN  VA+S+++MY K  ++  +  +F ++++RD VSWN ++    QNG   ETL+
Sbjct: 406 KSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLN 465

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F  +L   + PD+ T  +VL AC+    ++ GM + + + +  G+         +ID+ 
Sbjct: 466 LFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKS-GLGLDSFVGGALIDMY 524

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPY 552
           C+ G + +A  I   +  Q   S W +I+    +    +   +    M+ + + P    Y
Sbjct: 525 CKCGMIEEAKKIHDRIEQQTMVS-WNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTY 583

Query: 553 SLLTQAYA 560
           +++  A A
Sbjct: 584 AIVLDACA 591



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 135/301 (44%), Gaps = 44/301 (14%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S +I  C+   +L  GKQ  A  +  GF+ +  + +  + ++ +C+ L  + ++FE++
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI------------------------ 343
            + D    N MIS Y   G   +A E F    + D+                        
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 344 ---RPTEF-----TLSCVLSSIPIPPVEHGS---QFHSMAIKSGFDSNAVVASSLMEMYA 392
              R  E      T + VL +  +  +E G    Q H + ++ GF  + V  S+L++MYA
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSV--LEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYA 222

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   +D S +IF ++  ++ V W+ I+ G  QN      L++F+E+ + G+   +   A+
Sbjct: 223 KCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYAS 282

Query: 453 VLLACNYGGFVDKGMLVFS-AMKEEYG--VMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           V  +C     +  G  + + A+K ++G  +  G       +D+  + G L  A  I +++
Sbjct: 283 VFRSCAGLSALKVGTQLHAHALKCDFGSDITVG----TATLDMYAKCGSLADAQRIFNSL 338

Query: 510 P 510
           P
Sbjct: 339 P 339



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 51/222 (22%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++D C +  S    K IHG + KL  ++  Y+ +  +D+YS+ G   D   +F++ P K+
Sbjct: 586 VLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKD 645

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ++W                               N+MI GYA  G  + AL  F +MQL
Sbjct: 646 FVTW-------------------------------NAMICGYAQHGLGEEALGYFERMQL 674

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG-----------NSLIDM 189
           + VRP+  TF  +L     AC     H   I  GL   N +L            + +ID+
Sbjct: 675 ENVRPNHATFVSIL----RAC----AHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDI 726

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
            G+ G +  A  +   M  E D + W +L+S C   G  E+A
Sbjct: 727 IGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIA 768


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 184/615 (29%), Positives = 319/615 (51%), Gaps = 46/615 (7%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C   +  +  K IHG L K   +   ++G+  ++LYS+ G  +D             
Sbjct: 112 LKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMND------------- 158

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ-L 140
                             A+KVF E P+ DVV W S+I+GY   G  + AL  FS+M  L
Sbjct: 159 ------------------AVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVL 200

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           + V P   T    L + +SAC        G+ +HG + R G   + + L NS++++YGK 
Sbjct: 201 EQVSPDPVT----LVSAASACAQLSDFNLGRSVHGFVKRRGFD-TKLCLANSILNLYGKT 255

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F  M   DIISW+S+++   ++G    AL+ F  M       +  T+   +
Sbjct: 256 GSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISAL 315

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC    NL++GK +  L+V  GF  +  V +A +D++ KC   ++++ LF ++ + D  
Sbjct: 316 RACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVV 375

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMA 372
              V+ S Y   G    +L +F  ML    RP    L  +L+ S  +  V+     H+  
Sbjct: 376 SWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFV 435

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            KSGFD+N  + +SL+E+YAK  SID++ ++F  + ++D+V+W++I+     +G+  E L
Sbjct: 436 SKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEAL 495

Query: 433 DVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
            +F ++     + P+ +T  ++L AC++ G +++G+ +F  M  EY +MP  EHY  ++D
Sbjct: 496 KLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVD 555

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL + G+L KA+D+ + MP Q G  +W ++L A  I+ ++K+ E  A  +  L       
Sbjct: 556 LLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGY 615

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y+LL+  Y +   W    +++ ++++N   K+ G S + IKN +++F A +  H    +I
Sbjct: 616 YTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIASDRFHGESDQI 675

Query: 612 YLVLRLLTWEMEDEG 626
           Y +LR L   M++EG
Sbjct: 676 YGMLRKLDARMKEEG 690



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 210/438 (47%), Gaps = 11/438 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV---RPSGFTFSILLST 156
           A K+F+E P   V  WN+++  Y   G     L +F +M    +   RP  +T SI L +
Sbjct: 55  AHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKS 114

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            S       GK IHG + +  +  +++ +G++LI++Y K G +  A  VF    + D++ 
Sbjct: 115 CSGLQKLELGKMIHGFLKKKKID-NDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVL 173

Query: 214 WNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           W S+I+G   +G  ELAL  F  M      SPD  T+    +AC +L + + G+ V    
Sbjct: 174 WTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFV 233

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            + GF +   + ++ ++L+ K   +  +  LF ++   D    + M++ Y   G    AL
Sbjct: 234 KRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNAL 293

Query: 333 ELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M+ + I     T +S + +      +E G   H +A+  GF+ +  V+++LM+MY
Sbjct: 294 NLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMY 353

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K  S  ++ ++F ++ K+D+VSW  +  G  + G A ++L VF  +L  G  PD I L 
Sbjct: 354 MKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALV 413

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L A +  G V +  L   A   + G    E   A +I+L  +   +  A  +   M  
Sbjct: 414 KILAASSELGIVQQA-LCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMR- 471

Query: 512 QPGCSIWESILRASAIYG 529
           +     W SI+ A   +G
Sbjct: 472 RKDVVTWSSIIAAYGFHG 489



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 180/363 (49%), Gaps = 7/363 (1%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           LL T  S     Q+H   ++ GL+  + V+   L  +Y +   L +A  +F       + 
Sbjct: 10  LLETCCSKISIPQLHSQCLKVGLAHDSFVV-TKLNVLYARYASLCHAHKLFEETPCKTVY 68

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYS---PDEYTISIVINACTKLRNLDKGKQVF 269
            WN+L+   F  G     L  F+ M     +   PD YT+SI + +C+ L+ L+ GK + 
Sbjct: 69  LWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIH 128

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
               K    ++  V SA I+L+SKC ++ D+V++F +  + D  +   +I+ Y + G  E
Sbjct: 129 GFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPE 188

Query: 330 VALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           +AL  F ++++ E + P   TL    S+   +     G   H    + GFD+   +A+S+
Sbjct: 189 LALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSI 248

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + +Y KTGSI S+  +F ++  +D++SW++++     NG     L++F E++++ +  +R
Sbjct: 249 LNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNR 308

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T+ + L AC     +++G  +   +   YG          ++D+  +      AID+ +
Sbjct: 309 VTVISALRACASSSNLEEGKHIHK-LAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFN 367

Query: 508 TMP 510
            MP
Sbjct: 368 RMP 370


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 186/530 (35%), Positives = 289/530 (54%), Gaps = 23/530 (4%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS--TV 157
           A KVFD IPE + VSW ++ISGYA    +  A E+F  M+ +      F ++ +LS  TV
Sbjct: 167 ARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTV 226

Query: 158 SSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
               H GKQIH   +++GL LS   +GN+L+ MYGK G L  AF  F    + D I+W++
Sbjct: 227 PDLVHYGKQIHCLALKNGL-LSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSA 285

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G   +G    AL+ FY+M  +G  P E+T   VINAC+ +  L++GKQ+   S+K G
Sbjct: 286 MITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           +            L +KC  L D+ + F+ L   D     +++ T  R            
Sbjct: 346 YECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPD-----IVLWTSCR------------ 388

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M  E I P E T++ VL +   +  +E G Q H+  IK GF     + S+L  MYAK G
Sbjct: 389 -MQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCG 447

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S++    +F ++  RD+++WN ++ GL+QNG   + L++FEEL      PD +T   VL 
Sbjct: 448 SLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLS 507

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G V++G + F  M +E+G++P  EHYAC++D+L +AG+L +  +   +     G 
Sbjct: 508 ACSHMGLVERGKVYFRMMLDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGM 567

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            +W  +L A   Y + +L     E++M+L       Y LL+  Y   GR + + RV+++M
Sbjct: 568 CLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLM 627

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  G+NK  GCSWI +K++++ F  G+  H    KI   LR L   M+DE
Sbjct: 628 KLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMKDE 677



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 215/453 (47%), Gaps = 58/453 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC   K     K IH  L + G  +  YL N  ++LY++ G+               
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS--------------- 60

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA---SCGYSDYALEMFSK 137
                           +  A  VF+ I   DVVSWN +I+GY+   + GYS + +E+F +
Sbjct: 61  ----------------IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYS-FVMELFQR 103

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+ +   P+G TFS + +  SS+     G Q H   I++  +  +V +G+SLI+MY K+G
Sbjct: 104 MRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTS-NFYDVFVGSSLINMYCKIG 162

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  + E + +SW ++ISG         A + F  MR    + D++  + V++
Sbjct: 163 CMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLS 222

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A T    +  GKQ+  L++K G LS + V +A + ++ KC  L+D+ + FE     D   
Sbjct: 223 ALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDIT 282

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            + MI+ Y + G    AL LF  M     +P+EFT   V+++   I  +E G Q H  ++
Sbjct: 283 WSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSL 342

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+G++           + AK GS+  + + F  L + D+V W +  M +           
Sbjct: 343 KAGYECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIVLWTSCRMQM----------- 391

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
                  E + P  +T+A+VL AC+    +++G
Sbjct: 392 -------ERIMPHELTMASVLRACSSLAALEQG 417



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           ++ G   H+  +++G  S+  + +SL+ +YAK GSI  +  +F  +  +D+VSWN ++ G
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 422 LTQNGRAAET--LDVFEELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMK 474
            +Q G    +  +++F+ +  E   P+  T + V  A +     +GG     + + ++  
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTS-- 143

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
             Y V  G    + +I++ C+ G +  A  +  T+P +   S W +I+   A+
Sbjct: 144 NFYDVFVG----SSLINMYCKIGCMLDARKVFDTIPERNTVS-WATIISGYAM 191



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 89/175 (50%), Gaps = 11/175 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +  K IH    K GF+    +G+    +Y++ G+ +D   +F  +P 
Sbjct: 402 ASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPS 461

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ ++WN  + GL ++     AL++F+E+     +PD V++ +++S  +  G  +   ++
Sbjct: 462 RDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERG-KV 520

Query: 135 FSKMQLQ--GVRPSGFTFSILLSTVSSA--CHGKQ--IHGSMIRSGLSLSNVVLG 183
           + +M L   G+ P    ++ ++  +S A   H  +  I  + I  G+ L  ++LG
Sbjct: 521 YFRMMLDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLG 575


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/632 (28%), Positives = 326/632 (51%), Gaps = 40/632 (6%)

Query: 1    MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
            M  Y+++A +     ++ S ++  C++  S D  + +H    K   +A  ++ N  LD+Y
Sbjct: 415  MFQYMRRADLEADDFTFVS-VLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMY 473

Query: 61   SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
            S+ G                                +D A  +F  IP  D VSWN++I 
Sbjct: 474  SKLGA-------------------------------IDVAKALFSLIPGKDSVSWNALIV 502

Query: 121  GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSL 177
            G A     + A+ M  +M+  G+ P   +F+  +   S + +   GKQIH + I+  +  
Sbjct: 503  GLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVC- 561

Query: 178  SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            SN  +G+SLID+Y K G +  +  V  +++   ++  N+LI+G   +   + A++ F  +
Sbjct: 562  SNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQV 621

Query: 238  RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNR 296
               G+ P  +T + +++ CT   +   GKQV + ++K   L+    L  + + ++ KC  
Sbjct: 622  LKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKL 681

Query: 297  LEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            LED+ +L  ++ D  +       IS Y + G+ + +L +F  M   D+R  E T + VL 
Sbjct: 682  LEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLK 741

Query: 356  SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLV 413
            +   I  +  G + H + IKSGF S    AS+LM+MY+K G + SS EIF +L +K++++
Sbjct: 742  ACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIM 801

Query: 414  SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
             WN++++G  +NG A E L +F+++ E  L PD +TL  VL+AC++ G + +G  +F +M
Sbjct: 802  PWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSM 861

Query: 474  KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
             + YG++P  +HYAC+IDLL + G L +A ++   +PF+    IW + L A  ++ D + 
Sbjct: 862  SQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEER 921

Query: 534  TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
             +  A+++++++      Y  L+  +A  G W      ++ MR+ G+ K  GCSWI + N
Sbjct: 922  GKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGN 981

Query: 594  RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            +   F   +  H     IY +L  LT  M  +
Sbjct: 982  KTNLFVVQDTHHPDTLGIYKMLDDLTGMMNKD 1013



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 225/477 (47%), Gaps = 40/477 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    + +  + +H  + K GF +  +     +D+Y++     D  ++FD I   +
Sbjct: 166 VLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPD 225

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPE------------------------------- 109
            I W   + G  +      AL +F  + +                               
Sbjct: 226 TICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLK 285

Query: 110 ----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---H 162
               P  V+WN++IS Y+  G       ++  M+ QG+ P+  TF+ +LS  +S      
Sbjct: 286 RIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDE 345

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+QIH + ++ GL  +NV +G+SLI++Y K G +  A  VF    E +I+ WN+++ G  
Sbjct: 346 GQQIHAAAVKHGLD-ANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFV 404

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +   E  +  F  MR +    D++T   V+ AC  L +LD G+QV  +++K    ++  
Sbjct: 405 QNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLF 464

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D++SK   ++ +  LF  +   D    N +I         E A+ + + M    
Sbjct: 465 VANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYG 524

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I P E + +  +++   I   E G Q H  +IK    SN  V SSL+++Y+K G ++SS 
Sbjct: 525 IAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSR 584

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           ++   +D   +V  N ++ GL QN R  E +++F+++L++G  P   T A++L  C 
Sbjct: 585 KVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCT 641



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 257/535 (48%), Gaps = 41/535 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++    S  +FD  + IH    K G +A+ ++G+  ++LY + G              
Sbjct: 331 ASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHG-------------- 376

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
             CIS                A KVFD   E ++V WN+M+ G+      +  ++MF  M
Sbjct: 377 --CIS---------------DAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYM 419

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   +    FTF  +L     + S   G+Q+H   I++ +  +++ + N+++DMY KLG 
Sbjct: 420 RRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMD-ADLFVANAMLDMYSKLGA 478

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F  +   D +SWN+LI G  ++   E A+     M+  G +PDE + +  INA
Sbjct: 479 IDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINA 538

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ +R  + GKQ+   S+K    SN  V S+ IDL+SK   +E S ++   +D      I
Sbjct: 539 CSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPI 598

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAI 373
           N +I+   +    + A+ELFQ +L++  +P+ FT + +LS    P+  V  G Q HS  +
Sbjct: 599 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVI-GKQVHSYTL 657

Query: 374 KSG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAET 431
           KS   + +  +  SL+ +Y K   ++ + ++  ++ D ++LV W   + G  QNG + ++
Sbjct: 658 KSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQS 717

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L +F  +    +  D  T A+VL AC+    +  G  +   + +  G +  E   + ++D
Sbjct: 718 LVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKS-GFVSYETAASALMD 776

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           +  + G +  + +I   +  +     W S++   A  G       + ++M + QL
Sbjct: 777 MYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQL 831



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 149/310 (48%), Gaps = 38/310 (12%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFN 223
           +H  ++R GL L    LG++L+D+YG+ G + YA+              + +S++S    
Sbjct: 78  LHARVLRLGLPLRGR-LGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHAR 136

Query: 224 SGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           SG     LD F  +R S G +PD++ +++V++AC++L  L++G+QV    +K GF S++ 
Sbjct: 137 SGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAF 196

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
             +  +D+++KC  ++D+ R+F+ +   D      MI+ Y R G  + AL LF  M +  
Sbjct: 197 CQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMG 256

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P + T   ++S++                                  A  G +  +  
Sbjct: 257 SAPDQVTYVTIISTL----------------------------------ASMGRLSDART 282

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +  ++     V+WN ++   +Q+G  +E   +++++  +GL P R T A++L A      
Sbjct: 283 LLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTA 342

Query: 463 VDKGMLVFSA 472
            D+G  + +A
Sbjct: 343 FDEGQQIHAA 352



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 12/215 (5%)

Query: 318 MISTYGRYGFGEVALELFQLMLREDI--RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           ++S + R G     L+ FQ  LR  I   P +F L+ VLS+   +  +E G Q H   +K
Sbjct: 130 VLSCHARSGSPRDVLDAFQ-RLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLK 188

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SGF S+A   + L++MYAK   +  +  +F  +   D + W +++ G  + GR  + L +
Sbjct: 189 SGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALAL 248

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  + + G  PD++T   ++      G +     +   ++     MP    +  +I    
Sbjct: 249 FSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQ-----MPSTVAWNAVISSYS 303

Query: 495 QAGQLGKAIDITSTMPFQ---PGCSIWESILRASA 526
           Q+G   +   +   M  Q   P  S + S+L A+A
Sbjct: 304 QSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAA 338


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 190/631 (30%), Positives = 345/631 (54%), Gaps = 57/631 (9%)

Query: 17  YC-SQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           YC + +I  CL    F     + G + K G F++H  +G   +D++              
Sbjct: 157 YCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMF-------------- 202

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                        ++G   +D L++A KVFD++ E +VV+W  MI+  A  GY+D A+++
Sbjct: 203 -------------VKGCSLAD-LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDL 248

Query: 135 FSKMQLQ-GVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           F +M +  G  P  FT + L+S  +       GK++H  +IRSGL L ++ +G SL+DMY
Sbjct: 249 FLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVL-DLCVGCSLVDMY 307

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG--YGELALDQFYSMRYSG-YSPDEY 247
            K G++  A  VF  M E +++SW +L++G    G  Y   A+  F +M   G  +P+ +
Sbjct: 308 AKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCF 367

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S V+ AC  L + D G+QV   ++K+G  +   V +  + +++K  R+E + + F+ L
Sbjct: 368 TFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVL 427

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI-RPTE--------FTLSCVLSSIP 358
              +     V+  T          ++ F L   +D+ R  E        FT + +LS   
Sbjct: 428 FEKNLVSETVVDDT---------NVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAA 478

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            I  +  G Q H+M +K GF ++  V ++L+ MY+K G+ +++ ++F  ++  ++++W +
Sbjct: 479 CIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTS 538

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           I+ G  ++G A++ L++F  +LE G+ P+ +T  AVL AC++ G +D+    F++M++ +
Sbjct: 539 IINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNH 598

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           G++P  EHYAC++DLL ++G L +AI+  ++MPF     +W + L +  ++ + KL E+ 
Sbjct: 599 GIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHA 658

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+ +++ +   P  Y LL+  YA  GRWE +  ++K M++  I K  G SWI ++N+++ 
Sbjct: 659 AKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHK 718

Query: 598 FNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           F+ G+  H   Q+IY  L  L  ++++ G V
Sbjct: 719 FHVGDTLHPKAQQIYEKLDELALKIKNVGYV 749



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 138/540 (25%), Positives = 251/540 (46%), Gaps = 53/540 (9%)

Query: 6   KKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT 65
           +  H NK   S  S L+ +C+  K+    K +H  L        T L N  + LYS    
Sbjct: 45  ESTHNNKLITS--SLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYS---- 98

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD--EIPEPDVVSWNSMISGYA 123
                                      KS++  TA  +F   E  + DVVS++S+IS +A
Sbjct: 99  ---------------------------KSNDPITAFSIFQSMENSKRDVVSYSSIISCFA 131

Query: 124 SCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSN 179
           +      A+EMF ++ LQ GV P+ + F+ ++         K    + G ++++G   S+
Sbjct: 132 NNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSH 191

Query: 180 VVLGNSLIDMYGK---LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS 236
           V +G  LIDM+ K   L  L  A  VF  M E ++++W  +I+     GY + A+D F  
Sbjct: 192 VCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLE 251

Query: 237 MRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
           M   SGY PD +T++ +I+ C +++ L  GK++ +  ++ G + +  V  + +D+++KC 
Sbjct: 252 MLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCG 311

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG--EVALELF-QLMLREDIRPTEFTLSC 352
            ++++ ++F+ +   +      +++ Y R G G    A+ +F  ++L+  + P  FT S 
Sbjct: 312 LVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSG 371

Query: 353 VLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           VL +   +P  + G Q H   IK G  +   V + L+ +YAK+G ++S+ + F  L +++
Sbjct: 372 VLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKN 431

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           LVS   +     ++       D+  E+   G      T A++L      G + KG  +  
Sbjct: 432 LVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQI-H 490

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI--WESILRASAIYG 529
           AM  + G          +I +  + G    A+ + + M     C++  W SI+   A +G
Sbjct: 491 AMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDM---EDCNVITWTSIINGFAKHG 547


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/544 (32%), Positives = 303/544 (55%), Gaps = 8/544 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A  VFD + + +VVSW +++ G+   G    +L +FSKM L GV+P+ FTFS 
Sbjct: 19  KCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFST 78

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L     ++    G+QIH   +++G  + NVV GNS+IDMY K G +  A  +F  M   
Sbjct: 79  NLKACGLLNGLDIGRQIHDICVKTGFDMVNVV-GNSIIDMYSKCGRINEAACMFEVMPVR 137

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ISWN++I+G   +G+ E AL  F  M+  G   DE+T +  + AC+ L  + +G Q+ 
Sbjct: 138 NLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIH 197

Query: 270 ALSVKVGFL--SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           A  +  GFL   N+ V  A IDL+ KC +L  + R+F  ++         +I  Y + G 
Sbjct: 198 AFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGN 257

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
              ++ELF+ +    I+   F LS ++        V+ G Q H+ AIK     +  V +S
Sbjct: 258 LAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNS 317

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           +++MY K G I+ +  +F ++  R+++SW  ++ G  ++G   E + +F+E+  +   PD
Sbjct: 318 ILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPD 377

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T  AVLL C++ G V+KG   FS +   +G+    EHYAC++DLL +AG+L +A ++ 
Sbjct: 378 DVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLV 437

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
            +MP +    IW+++L A  ++GD++L + V   ++ L   +P+ Y +++  YA  G W+
Sbjct: 438 DSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWK 497

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE- 625
              R++++++   + K  G SW+ I   ++ F  G+  H   +KI+ +L+ +   M++E 
Sbjct: 498 ECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEEL 557

Query: 626 GCVY 629
           G VY
Sbjct: 558 GYVY 561



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 194/380 (51%), Gaps = 16/380 (4%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +++L N LI MYGK G L  A  VF  M + +++SW +L+ G   +G    +L  F  M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG  P+++T S  + AC  L  LD G+Q+  + VK GF   ++V ++ ID++SKC R+ 
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN 125

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           ++  +FE +   +    N MI+ Y   GF E AL LFQ M        EFT +  L +  
Sbjct: 126 EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACS 185

Query: 359 -IPPVEHGSQFHSMAIKSGF--DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
            +  ++ G+Q H+  I  GF    N  VA +L+++Y K G +  +  +F  ++++ ++SW
Sbjct: 186 DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISW 245

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
             +++G  Q G  AE++++F +L E  +  D   L++++     G F D  ++       
Sbjct: 246 TALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMM-----GVFADFALVQQGKQMH 300

Query: 476 EYGV-MP-GEEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            + + +P G +   C  I+D+  + G + +A  + S MP +   S W  ++     YG  
Sbjct: 301 AFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVIS-WTVMITG---YGKH 356

Query: 532 KLTENVAERMMDLQLPSPLP 551
            L +       ++QL S  P
Sbjct: 357 GLGKEAIRLFDEMQLDSTEP 376



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 166/351 (47%), Gaps = 36/351 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      D  + IH    K GF+    +GN  +D+YS+ G  ++   +F+ +P +N ISW
Sbjct: 83  CGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISW 142

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          N+MI+GY   G+ + AL +F KMQ  G  
Sbjct: 143 -------------------------------NAMIAGYTVAGFCEKALVLFQKMQEVGGF 171

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLGVLYYAF 200
              FTF+  L   S + +   G QIH  +I  G   S N  +  +LID+Y K G L+ A 
Sbjct: 172 LDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMAR 231

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF ++EE  +ISW +LI G    G    +++ F  +R S    D + +S ++       
Sbjct: 232 RVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFA 291

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            + +GKQ+ A ++KV    +  V ++ +D++ KC  + ++ RLF ++   +     VMI+
Sbjct: 292 LVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMIT 351

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHS 370
            YG++G G+ A+ LF  M  +   P + T L+ +L       VE G ++ S
Sbjct: 352 GYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFS 402



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 129/258 (50%), Gaps = 10/258 (3%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K   L  A +VF  I E  V+SW ++I GYA  G    ++E+F +++   ++  GF  S
Sbjct: 222 VKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILS 281

Query: 152 ILLSTVSSAC---HGKQIHGSMIR--SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            ++   +       GKQ+H   I+  SG+ +S   + NS++DMY K G++  A  +F  M
Sbjct: 282 SMMGVFADFALVQQGKQMHAFAIKVPSGVDIS---VCNSILDMYLKCGMINEAERLFSEM 338

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              ++ISW  +I+G    G G+ A+  F  M+     PD+ T   V+  C+    ++KG+
Sbjct: 339 PARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQ 398

Query: 267 QVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGR 324
           + F+ L    G  +     +  +DL  +  RL+++  L + +    +  +   ++S    
Sbjct: 399 EYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRV 458

Query: 325 YGFGEVALELFQLMLRED 342
           +G  E+  E+  ++LR D
Sbjct: 459 HGDLELGKEVGGILLRLD 476



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 4/155 (2%)

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF  + ++++ L+ MY K G +  + ++F ++ KR++VSW  +M G  QNG   E+L +F
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLC 494
            ++   G+ P+  T +  L AC     +D G  +    +K  + ++    +   IID+  
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGN--SIIDMYS 119

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           + G++ +A  +   MP +   S W +++    + G
Sbjct: 120 KCGRINEAACMFEVMPVRNLIS-WNAMIAGYTVAG 153



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF- 150
           LK   ++ A ++F E+P  +V+SW  MI+GY   G    A+ +F +MQL    P   T+ 
Sbjct: 323 LKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYL 382

Query: 151 SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME- 207
           ++LL    S     G++    +       + V     ++D+ G+ G L  A  +  +M  
Sbjct: 383 AVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPL 442

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYS---MRYSGYSPDEYTISIVINA-------CT 257
           E ++  W +L+S C    +G+L L +      +R    +P  Y +   I A       C 
Sbjct: 443 EANVGIWQTLLSAC--RVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECE 500

Query: 258 KLRNLDKGKQV 268
           ++R L K K++
Sbjct: 501 RIRELVKSKKL 511


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 309/596 (51%), Gaps = 36/596 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH    KLG + + ++G+  +D YS  G           +    C               
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGA----------VSHARC--------------- 206

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                 VFD I   D V+W +M+S Y+     + AL  FSKM++ G +P+ F  + +L  
Sbjct: 207 ------VFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKA 260

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +SSA  GK IHG  +++ L  +   +G +L+DMY K G +  A  VF  +   D+I 
Sbjct: 261 AVCLSSAVLGKGIHGCAVKT-LCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVIL 319

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W+ LIS    S   E A + F  M  S   P+E+++S V+ AC  +  LD G+Q+  L +
Sbjct: 320 WSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+G+ S   V +A +D+++KC  +E+S+ +F  L   +    N +I  Y + GF E AL 
Sbjct: 380 KLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALS 439

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +FQ M    +  T+ T S VL +      ++H  Q HS+  KS F+++ +V +SL++ YA
Sbjct: 440 VFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYA 499

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G I  + ++F  + + D+VSWN I+ G   +GRA + L++F  + +    P+ +T  A
Sbjct: 500 KCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVA 559

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L  C   G V++G+ +F++M  ++ + P  +HY CI+ LL +AG+L  A+     +P  
Sbjct: 560 LLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPST 619

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P   +W ++L +  ++ +V L +  AE++++++      Y LL+  YA  G  + +  ++
Sbjct: 620 PSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLR 679

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           K MR  G+ K  G SW+ IK  ++ F+ G   H   + I  +L  L  +   EG V
Sbjct: 680 KSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYV 735



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 255/520 (49%), Gaps = 44/520 (8%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAH--TYLGNRCLDLYSRFGTSDDVLQLFDE 75
           C++L+ RC++       + +H  + + G  A   T+  N  L+LY++ G           
Sbjct: 50  CARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGP---------- 99

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                L  A ++FD +PE ++VS+ +++ GYA  G  + A  +F
Sbjct: 100 ---------------------LAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLF 138

Query: 136 SKMQLQGVRPSGFTFSILLST-VSSACHGKQ--IHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            ++Q +G   + F  + +L   V+    G    IH    + G    N  +G+SLID Y  
Sbjct: 139 RRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHD-RNAFVGSSLIDAYSL 197

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G + +A  VF  +   D ++W +++S    +   E AL+ F  MR +G  P+ + ++ V
Sbjct: 198 CGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSV 257

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   L +   GK +   +VK    +   V  A +D+++KC  +ED+  +FE +   D 
Sbjct: 258 LKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDV 317

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
            + + +IS Y +    E A E+F  M+R  + P EF+LS VL +   +  ++ G Q H++
Sbjct: 318 ILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNL 377

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            IK G++S   V ++LM++YAK  ++++S EIF  L   + VSWNTI++G  Q+G A + 
Sbjct: 378 VIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDA 437

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--I 489
           L VF+E+    +   ++T ++VL AC     +   + + S +++        +   C  +
Sbjct: 438 LSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTF---NNDTIVCNSL 494

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ID   + G +  A+ +  ++  Q     W +I+   A++G
Sbjct: 495 IDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHG 533



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 37/334 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CLS  S    K IHG   K   +   ++G   LD+Y++ G  +D   +F+ IP       
Sbjct: 263 CLS--SAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD----- 315

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                     DV+ W+ +IS YA    ++ A EMF +M    V 
Sbjct: 316 --------------------------DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVV 349

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ F+ S +L   ++      G+QIH  +I+ G   S + +GN+L+D+Y K   +  +  
Sbjct: 350 PNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYE-SELFVGNALMDVYAKCRNMENSLE 408

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F ++ + + +SWN++I G   SG+ E AL  F  MR +     + T S V+ AC    +
Sbjct: 409 IFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTAS 468

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +    Q+ +L  K  F +++IV ++ ID ++KC  + D++++FE + + D    N +IS 
Sbjct: 469 IKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISG 528

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           Y  +G    ALELF  M + D +P + T   +LS
Sbjct: 529 YALHGRATDALELFNRMNKSDTKPNDVTFVALLS 562



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 36/290 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +    D  + IH  + KLG+ +  ++GN  +D+Y++    ++ L++F  +  
Sbjct: 356 SGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRD 415

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +SWN  + G  +S   + AL VF E+    V+S                        
Sbjct: 416 ANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLS------------------------ 451

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                  +  TFS +L   +  +S  H  QIH S+I      ++ ++ NSLID Y K G 
Sbjct: 452 -------TQVTFSSVLRACANTASIKHTVQIH-SLIEKSTFNNDTIVCNSLIDTYAKCGC 503

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF ++ + D++SWN++ISG    G    AL+ F  M  S   P++ T   +++ 
Sbjct: 504 IRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSV 563

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           C     +++G  +F ++++      +    +  + L  +  RL D+++  
Sbjct: 564 CGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFI 613



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 54/262 (20%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++ AHV    +++ S ++  C +  S      IH  + K  FN  T + N  +D Y++ G
Sbjct: 444 MRAAHVLSTQVTF-SSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCG 502

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                 C+R          ALKVF+ I + DVVSWN++ISGYA 
Sbjct: 503 ----------------------CIRD---------ALKVFESIIQCDVVSWNAIISGYAL 531

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
            G +  ALE+F++M     +P+  TF  LLS   S          ++  GLSL N +  +
Sbjct: 532 HGRATDALELFNRMNKSDTKPNDVTFVALLSVCGST--------GLVNQGLSLFNSMTMD 583

Query: 185 S-----------LIDMYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALD 232
                       ++ + G+ G L  A     ++      + W +L+S C    +  +AL 
Sbjct: 584 HRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCV--VHKNVALG 641

Query: 233 QFYSMRYSGYSPDEYTISIVIN 254
           +F + +     P + T  ++++
Sbjct: 642 KFSAEKVLEIEPQDETTYVLLS 663


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 182/578 (31%), Positives = 304/578 (52%), Gaps = 37/578 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+        + +HG + K G      L N  +++YS+  +++D                
Sbjct: 272 CMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAED---------------- 315

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                          A +VF  I EPDVV  + MIS +     +  A ++F +M   GV+
Sbjct: 316 ---------------AYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK 360

Query: 145 PSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ +TF   +I+ S        + IH  +++SG S +  V  ++++ MY K G +  A  
Sbjct: 361 PNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVC-DAIVGMYVKTGAVQDAIL 419

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            F  M+  DI SWN+L+SG ++    E  L  F  +   G   ++YT   ++  CT L +
Sbjct: 420 AFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMD 479

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G QV A  +K GF  +  V    +D++ +     ++  +F++L   D     V++ST
Sbjct: 480 LRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMST 539

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y +   GE A+E F+ MLRE+ RP + TL+  LS    +  +  G Q HS  IKSG++S+
Sbjct: 540 YAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSS 599

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            VV+S+L++MY K G++  +  +F + D  DLV WNTI+ G  Q+G   + L+ F+E+++
Sbjct: 600 -VVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMID 658

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           EG  PD IT   VL AC++ G +D+G   F  +   YG+ P  EHYAC++D+L +AG+L 
Sbjct: 659 EGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLA 718

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A  + + MP  P  S+W++IL A  ++G++++ E  AE++ + Q        LL+  YA
Sbjct: 719 EAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYA 778

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
              RW  + +++ ++   G+ K  GCSWI I  +++ F
Sbjct: 779 DLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVF 816



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 197/439 (44%), Gaps = 38/439 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + ++    K +H  L + G     +L +  L++Y + G                    
Sbjct: 70  CAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCG-------------------- 109

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L  A  VFD +P  DVV+W +M+S   + G +  AL +F++M  +GV 
Sbjct: 110 -----------RLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVV 158

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+GF  +  L   +         Q+H   ++    L +  + +SL++ Y   G +  A  
Sbjct: 159 PNGFALAAALKACTVGSDLGFTPQVHAQAVKLE-GLFDPYVSSSLVEAYVSCGEVDVAER 217

Query: 202 VFLNMEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
             L+      +SWN+L++     G Y ++ L  F  +  SG    +YT+  V+  C +L 
Sbjct: 218 ALLDSPVRSDVSWNALLNEYARDGDYAKVML-VFDKLVESGDEISKYTLPTVLKCCMELG 276

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
               G+ V  L +K G  ++ ++ +  I+++SKC   ED+  +F ++D  D    ++MIS
Sbjct: 277 LAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMIS 336

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDS 379
            + R+     A ++F  M    ++P ++T +   + +     V      H+  +KSGF  
Sbjct: 337 CFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSR 396

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              V  +++ MY KTG++  +   F  +   D+ SWNT++ G          L +F+EL+
Sbjct: 397 TKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELI 456

Query: 440 EEGLPPDRITLAAVLLACN 458
            EG+  ++ T   +L  C 
Sbjct: 457 CEGVLANKYTYVGILRCCT 475



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 156/304 (51%), Gaps = 4/304 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK +H  ++RSG    +  L +SL++MY K G L  A  VF  M   D+++W +++S   
Sbjct: 79  GKALHARLLRSG-PRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAIT 137

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G    AL  F  M   G  P+ + ++  + ACT   +L    QV A +VK+  L +  
Sbjct: 138 AAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPY 197

Query: 283 VLSATIDLFSKCNRLEDSVR-LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           V S+ ++ +  C  ++ + R L +   R D +  N +++ Y R G     + +F  ++  
Sbjct: 198 VSSSLVEAYVSCGEVDVAERALLDSPVRSDVS-WNALLNEYARDGDYAKVMLVFDKLVES 256

Query: 342 DIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
               +++TL  VL   + +   + G   H + IK G +++ V+ + L+EMY+K  S + +
Sbjct: 257 GDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDA 316

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            E+F ++D+ D+V  + ++    ++  A E  D+F ++ + G+ P++ T   + +  +  
Sbjct: 317 YEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRT 376

Query: 461 GFVD 464
           G V+
Sbjct: 377 GDVN 380



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 1/221 (0%)

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           +  +  C   R L +GK + A  ++ G   ++ +  + ++++ KC RL D+  +F+ +  
Sbjct: 64  AAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPH 123

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQF 368
            D      M+S     G    AL LF  M  E + P  F L+  L +  +   +    Q 
Sbjct: 124 RDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQV 183

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+ A+K     +  V+SSL+E Y   G +D +    +    R  VSWN ++    ++G  
Sbjct: 184 HAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDY 243

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           A+ + VF++L+E G    + TL  VL  C   G    G  V
Sbjct: 244 AKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAV 284


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 292/547 (53%), Gaps = 6/547 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ L+   +   LD A  +F+EIPE D V++N++I+GY   G    ++ +F KM+  G +
Sbjct: 188 NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ 247

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           PS FTFS +L  V        G+Q+H   + +G S  +  +GN ++D Y K   +     
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFS-RDASVGNQILDFYSKHDRVLETRM 306

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M ELD +S+N +IS    +   E +L  F  M+  G+    +  + +++    L +
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G+Q+   ++     S   V ++ +D+++KC   E++  +F+ L +        +IS 
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSN 380
           Y + G     L+LF  M   ++R  + T + VL +S     +  G Q H+  I+SG   N
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
               S L++MYAK GSI  + ++F ++  R+ VSWN ++     NG     +  F +++E
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            GL PD +++  VL AC++ GFV++G   F AM   YG+ P ++HYAC++DLL + G+  
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAY 559
           +A  +   MPF+P   +W S+L A  I+ +  L E  AE++  ++ L     Y  ++  Y
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIY 666

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G WE +  VKK MR+ GI KV   SW+ + ++I+ F++ +  H  G +I   +  LT
Sbjct: 667 AAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELT 726

Query: 620 WEMEDEG 626
            E+E EG
Sbjct: 727 AEIEREG 733



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 145/538 (26%), Positives = 256/538 (47%), Gaps = 13/538 (2%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M  Y     V   +L+   QL  R  S  +F   + +   + K GF+  T   N  ++  
Sbjct: 1   MKLYCNSNEVRSRTLATLRQL--RQPSPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDL 58

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
            R G      +++DE+P KN +S N  + G +K+ ++ +A  +FD +P+  VV+W  ++ 
Sbjct: 59  LRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMG 118

Query: 121 GYASCGYSDYALEMFSKMQLQG--VRPSGFTFSILLSTVSSACHGK---QIHGSMIRSGL 175
            YA   + D A ++F +M        P   TF+ LL   + A       Q+H   ++ G 
Sbjct: 119 WYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGF 178

Query: 176 SLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
             +  + + N L+  Y ++  L  A  +F  + E D +++N+LI+G    G    ++  F
Sbjct: 179 DTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLF 238

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             MR SG+ P ++T S V+ A   L +   G+Q+ ALSV  GF  ++ V +  +D +SK 
Sbjct: 239 LKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKH 298

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
           +R+ ++  LF+++   D+   NV+IS+Y +    E +L  F+ M         F  + +L
Sbjct: 299 DRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATML 358

Query: 355 S-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           S +  +  ++ G Q H  A+ +  DS   V +SL++MYAK    + +  IF  L +R  V
Sbjct: 359 SIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTV 418

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA-CNYGGFVDKGMLVFSA 472
           SW  ++ G  Q G     L +F ++    L  D+ T A VL A  ++   +    L   A
Sbjct: 419 SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQL--HA 476

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
                G +      + ++D+  + G +  A+ +   MP +   S W +++ A A  GD
Sbjct: 477 FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAHADNGD 533


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 191/644 (29%), Positives = 323/644 (50%), Gaps = 65/644 (10%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C  L+    S KS   AK +H  + +    + + L    L +YS      D L +F+ +P
Sbjct: 8   CKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLST-ILSIYSNLNLLHDSLLIFNSLP 66

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                                           P  ++W S+I  Y S G   ++L  F +
Sbjct: 67  S------------------------------PPTTLAWKSIIRCYTSHGLFLHSLSFFIQ 96

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY---- 190
           M   G  P    F  +L +   +     G+ +HG +IR G+   ++   N+L++MY    
Sbjct: 97  MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGF-DLYTCNALMNMYSKFW 155

Query: 191 --------------GKLGVLY-------YAFG----VFLNMEELDIISWNSLISGCFNSG 225
                         GK   +Y       Y  G    VF  M + DI+SWN++ISG   +G
Sbjct: 156 SLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNG 215

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
             E AL     M  +   PD +T+S V+    +  NL KGK++   +++ G+ ++  + S
Sbjct: 216 MHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGS 275

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           + ID+++KC R++DS R+F  L + D    N +I+   + G  +  L+ FQ ML   I+P
Sbjct: 276 SLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKP 335

Query: 346 TEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
              + S ++ +       H G Q H   I+S FD N  +AS+L++MYAK G+I ++  IF
Sbjct: 336 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIF 395

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            K++  D+VSW  ++MG   +G A + + +F+ +  EG+ P+ +   AVL AC++ G VD
Sbjct: 396 DKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVD 455

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +    F++M ++Y ++PG EHYA + DLL + G+L +A +  S M  +P  S+W ++L A
Sbjct: 456 EAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 515

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
             ++ +++L E V++++  +   +   Y LL+  Y+  GRW+   +++  MR  G+ K  
Sbjct: 516 CRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKP 575

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            CSWI IKN+++ F AG+  H    +I   L++L  +ME EG V
Sbjct: 576 ACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYV 619


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/588 (30%), Positives = 315/588 (53%), Gaps = 35/588 (5%)

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           D   ++F+++P ++ ISWN+ L G +K+ NL  A  +F+++PE DVVSWN+M+SG+A  G
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167

Query: 127 YSDYALEMFSKMQLQG-VRPSG-----------------FTFSILLSTVSSAC-HGKQIH 167
           + + A ++F +M ++  +  +G                 F   +    VS  C  G  + 
Sbjct: 168 FVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 168 GSMIRSGLSL------SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
              +    SL       + +  N +I  Y + G+L  A  +F  +   D+ +W +++SG 
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGF 287

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G  + A   F  M       +E + + +I    + + ++K +++F          N+
Sbjct: 288 VQNGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPS----RNT 339

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
              +  +  +++C  ++ +  LF+++ + D      MIS Y + G  E AL LF  M R+
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399

Query: 342 DIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
                   L+C LSS   I  +E G Q H   +K+GF +  +  ++L+ MY K GSI+ +
Sbjct: 400 GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F  + ++D+VSWNT++ G  ++G   E L +FE + +  + PD +TL  VL AC++ 
Sbjct: 460 FDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHT 518

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G VDKGM  F++M + YG+    +HY C+IDLL +AG+L +A+++  +MPF P  + W +
Sbjct: 519 GLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L AS I+GD +L E  AE++ +++  +   Y LL+  YA  GRW  +  ++  MR  G+
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            KV G SW+ I+N+ + F  G+  H   ++IY  L  L  E++ +G V
Sbjct: 639 KKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFV 686



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 212/493 (43%), Gaps = 67/493 (13%)

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           I   + + WN  +   ++    ++AL VF+ +     V++N+MISGY S    D A ++F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            KM      P                                 +++  N ++  Y K G 
Sbjct: 115 EKM------PD-------------------------------RDLISWNVMLSGYVKNGN 137

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  M E D++SWN+++SG   +G+ E A   F  M       +E + + +++A
Sbjct: 138 LSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNGLLSA 193

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
             +   ++  +++F   +    +S + ++      + +  RL+D+  LF+++   D    
Sbjct: 194 YVQNGRIEDARRLFDSKMDWEIVSWNCLMGG----YVRKKRLDDARSLFDRMPVRDKISW 249

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAI 373
           N+MI+ Y + G    A  LF+ +   D+    F  + ++S      +  E    F  M  
Sbjct: 250 NIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPE 305

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+    NA++A      Y ++  I+ + E+F ++  R+  SWNT++ G  Q G   +   
Sbjct: 306 KNEVSWNAMIAG-----YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKI 360

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F+E+ +     D I+ AA++      G  ++ + +F  MK + G++      AC +   
Sbjct: 361 LFDEMPQR----DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL-NRSALACALSSC 415

Query: 494 CQ--AGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
            +  A +LGK +        FQ G     ++L   A+YG     E   +   D+     +
Sbjct: 416 AEIAALELGKQLHGRLVKAGFQTGYIAGNALL---AMYGKCGSIEEAFDVFEDITEKDIV 472

Query: 551 PYSLLTQAYAMRG 563
            ++ +   YA  G
Sbjct: 473 SWNTMIAGYARHG 485


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 289/540 (53%), Gaps = 5/540 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A K+FD +P+ D+VSWN +ISGY   G    A  +F  M   G++P   TF+ 
Sbjct: 206 KCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFAS 265

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L  V+   S  H K+IHG +IR  + L +V L ++LID+Y K   +  A          
Sbjct: 266 FLPCVNELLSLKHCKEIHGYIIRHAVVL-DVFLKSALIDIYFKCRDVEMAQKNLCQSSSF 324

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +   ++ISG   +G  + AL+ F  +      P   T S +  A   L  L+ GK++ 
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELH 384

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K        V SA +D+++KC RL+ + R+F ++   D    N MI++  + G   
Sbjct: 385 GSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPG 444

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+ LF+ M  E  R    ++S  LS+   +P + +G + H + IK    S+    SSL+
Sbjct: 445 EAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLI 504

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G+++ S  +F ++ +++ VSWN+I+     +G   E L +F E+L  G+ PD +
Sbjct: 505 DMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHV 564

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   ++ AC + G VD+G+  +  M EEYG+    EHYAC+ D+  +AG+L +A +  ++
Sbjct: 565 TFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINS 624

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF P   +W ++L A  I+G+V+L E  ++ + DL   +   Y LL    A  G+W  +
Sbjct: 625 MPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKV 684

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           ++V+ +M++ G+ KV G SWI + N  + F A +  H    +IY VL  L  E++ EG V
Sbjct: 685 LKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYV 744



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 249/524 (47%), Gaps = 54/524 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   KS    K +H  +  +G     ++G+  + LY+  G   D   LFD IPQK+
Sbjct: 64  VVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKD 123

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN+ L G +K+ +   A+K+F E                               M+ 
Sbjct: 124 SVLWNVMLNGYVKNGDSGNAIKIFLE-------------------------------MRH 152

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             ++P+  TF+ +LS  +S      G Q+HG  +  GL L + V  N+L+ MY K   L 
Sbjct: 153 SEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPV-ANTLLAMYSKCQCLQ 211

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  + + D++SWN +ISG   +G    A   F  M  +G  PD  T +  +    
Sbjct: 212 AARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +L +L   K++    ++   + +  + SA ID++ KC  +E + +   Q   +D  V   
Sbjct: 272 ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTT 331

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y   G  + ALE F+ +++E ++PT  T S +  +   +  +  G + H   IK+ 
Sbjct: 332 MISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK 391

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D    V S++++MYAK G +D +  +F ++ ++D + WN+++   +QNGR  E +++F 
Sbjct: 392 LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFR 451

Query: 437 ELLEEGLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYA--C 488
           ++  EG   D ++++  L AC      +YG  +  G+++   ++ +         YA   
Sbjct: 452 QMGMEGTRYDCVSISGALSACANLPALHYGKEI-HGLMIKGPLRSDL--------YAESS 502

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           +ID+  + G L  +  +   M  +   S W SI+ A   +GD+K
Sbjct: 503 LIDMYAKCGNLNFSRRVFDRMQEKNEVS-WNSIISAYGNHGDLK 545



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 183/369 (49%), Gaps = 5/369 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +++ +L  A  +F  +      +WN MI G+   G  +YAL  + KM   GV P  +TF 
Sbjct: 3   VRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFP 62

Query: 152 ILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            ++     + S   GK +H ++   GL   +V +G+SLI +Y + G L  A  +F N+ +
Sbjct: 63  YVVKACCGLKSVKMGKIVHETVNLMGLK-EDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D + WN +++G   +G    A+  F  MR+S   P+  T + V++ C     LD G Q+
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
             ++V  G   +S V +  + ++SKC  L+ + +LF+ L + D    N +IS Y + G  
Sbjct: 182 HGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLM 241

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             A  LF+ M+   I+P   T +  L  +  +  ++H  + H   I+     +  + S+L
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y K   ++ + +   +    D V   T++ G   NG+  E L+ F  L++E + P  
Sbjct: 302 IDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTS 361

Query: 448 ITLAAVLLA 456
           +T +++  A
Sbjct: 362 VTFSSIFPA 370



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 225/510 (44%), Gaps = 80/510 (15%)

Query: 8   AHVNKASLSYCSQL--IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT 65
           A +   S+++ S L  ++  LS K     K IHG++ +       +L +  +D+Y +   
Sbjct: 254 AGIKPDSITFASFLPCVNELLSLKH---CKEIHGYIIRHAVVLDVFLKSALIDIYFK--- 307

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
             DV     E+ QKN          L +S + DT             V   +MISGY   
Sbjct: 308 CRDV-----EMAQKN----------LCQSSSFDT-------------VVCTTMISGYVLN 339

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVL 182
           G +  ALE F  +  + ++P+  TFS +    +       GK++HGS+I++ L      +
Sbjct: 340 GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLD-EKCHV 398

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           G++++DMY K G L  A  VF  + E D I WNS+I+ C  +G    A++ F  M   G 
Sbjct: 399 GSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGT 458

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
             D  +IS  ++AC  L  L  GK++  L +K    S+    S+ ID+++KC  L  S R
Sbjct: 459 RYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRR 518

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPP 361
           +F+++   +    N +IS YG +G  +  L LF  MLR  I+P   T   ++S+      
Sbjct: 519 VFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQ 578

Query: 362 VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
           V+ G + +H M  + G  +        ME YA         ++F                
Sbjct: 579 VDEGIRYYHLMTEEYGIPAR-------MEHYA------CVADMF---------------- 609

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
                GRA    + FE +     PPD      +L AC+  G V+   L   A K  + + 
Sbjct: 610 -----GRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVE---LAEVASKHLFDLD 661

Query: 481 P-GEEHYACIIDLLCQAGQLGKAIDITSTM 509
           P    +Y  + ++   AG+  K + + S M
Sbjct: 662 PLNSGYYVLLANVQAGAGKWRKVLKVRSIM 691



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 143/271 (52%), Gaps = 1/271 (0%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY + G L  A  +F  ++     +WN +I G    G    AL  +  M  +G SPD+YT
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              V+ AC  L+++  GK V      +G   +  V S+ I L+++   L D+  LF+ + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ 367
           + D  + NVM++ Y + G    A+++F  M   +I+P   T +CVLS       ++ G+Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H +A+  G + ++ VA++L+ MY+K   + ++ ++F  L + DLVSWN I+ G  QNG 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             E   +F  ++  G+ PD IT A+ L   N
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVN 271


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 305/542 (56%), Gaps = 13/542 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM---QLQGVRPSGFTFSI 152
           +L+ A K FDE+ +  +V+WN++I+GY+  G    AL+++  M     +G++P   TFS 
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L   S V     G++I    + SG + S+ ++ N+LI+MY K G L  A  VF  ++  
Sbjct: 169 ALYACSVVGDISQGREIEARTVASGYA-SDSIVQNALINMYSKCGSLESARKVFDRLKNR 227

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+I+WN++ISG    G    AL+ F  M  +   P+  T   ++ ACT L +L++G+ + 
Sbjct: 228 DVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH 287

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               + G+ S+ ++ +  +++++KC+  LE++ ++FE+L   D    N++I  Y +YG  
Sbjct: 288 RKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQA 347

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSL 387
           + AL++F+ M  E++ P E TLS VLS+  +   +  G   H++       ++ V+ +SL
Sbjct: 348 KDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSL 407

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           M MY + GS+D +  +F  +  + LVSW+T++    Q+G +   L+ F ELL+EGL  D 
Sbjct: 408 MNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADD 467

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T+ + L AC++GG + +G+  F +M  ++G+ P   H+ C++DLL +AG+L  A ++  
Sbjct: 468 VTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIH 527

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP-YSLLTQAYAMRGRWE 566
            MPF P    W S+L    ++ D K    VA+++ +L+        +LL+  YA  GRW+
Sbjct: 528 DMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD 587

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V+K   +    K  GCS+I I + ++ F AG+  H   + I   ++ L+ +M+D G
Sbjct: 588 ---DVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAG 644

Query: 627 CV 628
            V
Sbjct: 645 YV 646



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 214/387 (55%), Gaps = 8/387 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  ++  AL VF  I  P+ VSW  +++ +A  G+   AL  + +M L+G+RP G  F +
Sbjct: 4   KCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVV 63

Query: 153 LLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +   SS+   KQ   +H  ++ + L   +++LG +LI MY +   L  A   F  M + 
Sbjct: 64  AIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKK 123

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM---RYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +++WN+LI+G   +G    AL  +  M      G  PD  T S  + AC+ + ++ +G+
Sbjct: 124 TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGR 183

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++ A +V  G+ S+SIV +A I+++SKC  LE + ++F++L   D    N MIS Y + G
Sbjct: 184 EIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQG 243

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               ALELFQ M   D +P   T   +L++   +  +E G   H    + G++S+ V+ +
Sbjct: 244 AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGN 303

Query: 386 SLMEMYAK-TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
            L+ MY K + S++ + ++F +L  RD+++WN +++   Q G+A + LD+F+++  E + 
Sbjct: 304 VLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVA 363

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS 471
           P+ ITL+ VL AC   G   +G  V +
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHA 390



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 157/293 (53%), Gaps = 5/293 (1%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MYGK G +  A  VF  +E  + +SW  +++    +G+   AL  +  M   G  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQL 307
             + I  C+  ++L +G+ + A+ ++   L   I+L +A I ++++C  LE + + F+++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLR---EDIRPTEFTLSCVLSSIP-IPPVE 363
            +      N +I+ Y R G    AL+++Q M+    E ++P   T S  L +   +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G +  +  + SG+ S+++V ++L+ MY+K GS++S+ ++F +L  RD+++WNT++ G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           + G A + L++F+ +      P+ +T   +L AC     +++G  +   +KE 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEH 293



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 182/359 (50%), Gaps = 11/359 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +L++A KVFD +   DV++WN+MISGYA  G +  ALE+F +M     +P+  TF  
Sbjct: 210 KCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL-GVLYYAFGVFLNMEE 208
           LL+  ++      G+ IH  +   G   S++V+GN L++MY K    L  A  VF  +  
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYE-SDLVIGNVLLNMYTKCSSSLEEARQVFERLRT 328

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+I+WN LI      G  + ALD F  M+    +P+E T+S V++AC  L    +GK V
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            AL       ++ ++ ++ ++++++C  L+D+V +F  +        + +I+ Y ++G  
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHS 448

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASS 386
              LE F  +L+E +   + T+   LS+      ++ G Q F SM    G   +      
Sbjct: 449 RTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLC 508

Query: 387 LMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGL---TQNGRAAETLDVFEELLEE 441
           ++++ ++ G ++++  +   +    D V+W +++ G        RAA   D   EL  E
Sbjct: 509 MVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESE 567



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 37/292 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS-DDVLQLFDEIPQK 79
           L+  C + +  +  + IH  + + G+ +   +GN  L++Y++  +S ++  Q+F+ +  +
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + I+WNI                               +I  Y   G +  AL++F +MQ
Sbjct: 330 DVITWNI-------------------------------LIVAYVQYGQAKDALDIFKQMQ 358

Query: 140 LQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           L+ V P+  T S +LS  +   +   GK +H ++I SG   ++VVL NSL++MY + G L
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGKAVH-ALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
               GVF  + +  ++SW++LI+     G+    L+ F+ +   G + D+ T+   ++AC
Sbjct: 418 DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    L +G Q F ++    G   +       +DL S+  RLE +  L   +
Sbjct: 478 SHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDM 529



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 51/215 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +    K +H  +      A   L N  +++Y+R G+ DD + +F  I  
Sbjct: 370 SNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRD 429

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +                               SW+++I+ YA  G+S   LE F ++
Sbjct: 430 KSLV-------------------------------SWSTLIAAYAQHGHSRTGLEHFWEL 458

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS-----------LI 187
             +G+     T   ++ST+ SAC     HG M++ G+     ++G+            ++
Sbjct: 459 LQEGLAADDVT---MVSTL-SACS----HGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMV 510

Query: 188 DMYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGC 221
           D+  + G L  A  +  +M  L D ++W SL+SGC
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGC 545


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 280/523 (53%), Gaps = 6/523 (1%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGK 164
           P   VV+W ++ISG    GY   AL  FSKM+ + ++P+ FTF       ++ C    GK
Sbjct: 19  PTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCLPFAGK 78

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           QIH   ++ G  +++  +G S  DMY K G+ + A  +F  M   ++  WN+ IS     
Sbjct: 79  QIHAIALKLG-QINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLD 137

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G    A+D+F   R  G  PD  T    +NAC   R LD G+Q+  L ++ GF  +  V 
Sbjct: 138 GRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVA 197

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +  ID++ KC  +E +  +F  + R +      M++   +    E A  +F +  +E I 
Sbjct: 198 NGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIE 257

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            T++ +S V+S+   I  +E G   H++A+K+  + +  V S+L++MY K GSI+   ++
Sbjct: 258 LTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQV 317

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++ +R+LVSWN ++ G    G     + +FEE+  E +  + +TL  VL AC+ GG V
Sbjct: 318 FHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACSRGGAV 376

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
             G  +F +M++ Y + PG EHYACI D+L +AG + +A +    MP +P  S+W ++L 
Sbjct: 377 KLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLN 436

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
           A  +YG+ +L +  A+ +  L       + LL+  +A  GRW+    V+K M+  GI K 
Sbjct: 437 ACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKG 496

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            GCSW+  KN+++ F A +  H    +I  +L  L  EM+  G
Sbjct: 497 AGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAG 539



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 182/401 (45%), Gaps = 43/401 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CL F      K IH    KLG     ++G    D+YS+ G   +  +LFDE+P +N    
Sbjct: 72  CLPFA----GKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRN---- 123

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                      V  WN+ IS     G    A++ F + +  G  
Sbjct: 124 ---------------------------VAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGE 156

Query: 145 PSGFTFSILLSTVSSA-C--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   TF   L+  + A C   G+Q+HG +IRSG    +V + N +ID+YGK   +  A  
Sbjct: 157 PDLITFCAFLNACADARCLDLGRQLHGLVIRSGFE-GDVSVANGIIDVYGKCKEVELAEM 215

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M   + +SW ++++ C  +   E A   F   R  G    +Y +S VI+A   +  
Sbjct: 216 VFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISG 275

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ G+ V AL+VK     +  V SA +D++ KC  +ED  ++F ++   +    N MIS 
Sbjct: 276 LEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISG 335

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQ-FHSMAIKSGFDS 379
           Y   G  ++A+ LF+ M  E +     TL CVLS+      V+ G++ F SM  +   + 
Sbjct: 336 YAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEP 394

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
            A   + + +M  + G ++ + E   K+  R  +S W  ++
Sbjct: 395 GAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALL 435



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 169/405 (41%), Gaps = 80/405 (19%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +++C+  ++ C   +  D  + +HG + + GF     + N  +D+Y +    +    +F+
Sbjct: 160 ITFCA-FLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFN 218

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYSDY 130
            + ++N +SW   +    ++D  + A  VF     E  E      +S+IS YA       
Sbjct: 219 GMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGI----- 273

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
                          SG  F            G+ +H   +++ +   ++ +G++L+DMY
Sbjct: 274 ---------------SGLEF------------GRSVHALAVKACVE-GDIFVGSALVDMY 305

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           GK G +     VF  M E +++SWN++ISG  + G  ++A+  F  M+    + +  T+ 
Sbjct: 306 GKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLI 364

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V++AC++   +  G ++F                           + D  R+    +  
Sbjct: 365 CVLSACSRGGAVKLGNEIF-------------------------ESMRDRYRIEPGAEH- 398

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI---PPVEHGSQ 367
            YA I  M+   GR G  E A E  Q M    IRPT      +L++  +   P +   + 
Sbjct: 399 -YACIADML---GRAGMVERAYEFVQKM---PIRPTISVWGALLNACRVYGEPELGKIAA 451

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
            +   +      N V+ S+   M+A  G  D +T   V+ + +D+
Sbjct: 452 DNLFKLDPKDSGNHVLLSN---MFAAAGRWDEAT--LVRKEMKDV 491


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 312/611 (51%), Gaps = 38/611 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C         K +H  + KL  ++H    N  + +Y RF    D            
Sbjct: 171 IIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSD------------ 218

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A KVF  IP  D++SW+S+I+G++  G+   AL    +M  
Sbjct: 219 -------------------ASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLS 259

Query: 141 QGV-RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            GV  P+ + F   L   SS     +G QIHG  I+  L+  N + G SL DMY + G L
Sbjct: 260 FGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELT-GNAIAGCSLCDMYARCGFL 318

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  +E  D  SWN +I+G  N+GY + A+  F  MR SG+ PD  ++  ++ A 
Sbjct: 319 DSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQ 378

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
           TK   L +G Q+ +  +K GFL++  V ++ + +++ C+ L     LFE   ++ D    
Sbjct: 379 TKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSW 438

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIK 374
           N +++   ++      L LF+LML  +  P   T+  +L   + I  ++ GSQ H  + K
Sbjct: 439 NAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWK 498

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      + + L++MYAK GS+  +  IF  +D  D+VSW+T+++G  Q+G   E L +
Sbjct: 499 TGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALIL 558

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F E+   G+ P+ +T   VL AC++ G V++G+ +++ M+ E+G+ P +EH +C++DLL 
Sbjct: 559 FREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLA 618

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A      M  +P   +W+++L A    G+V L +  AE ++ +   +   + L
Sbjct: 619 RAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVL 678

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   +A  G WE    ++  M+K+ + K+ G SWI ++++I+ F A ++ H     IY V
Sbjct: 679 LCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWIDVEDKIHIFFAEDVLHPERDDIYTV 738

Query: 615 LRLLTWEMEDE 625
           L  +  +M DE
Sbjct: 739 LHNIWSQMLDE 749



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 206/443 (46%), Gaps = 38/443 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C S +S    + IH H+        T L N  L +Y + G+  D  ++FD +P++N
Sbjct: 70  LICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERN 129

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                          +VS+ S+I+GY+  G    A+ ++ KM  
Sbjct: 130 -------------------------------LVSYTSVITGYSQNGQEAEAITLYLKMLQ 158

Query: 141 QGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             + P  F F  ++   + A     GKQ+H  +I+   S S+++  N+LI MY +   + 
Sbjct: 159 ADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLE-SSSHLIAQNALIAMYVRFNQMS 217

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINAC 256
            A  VF  +   D+ISW+S+I+G    G+   AL     M   G + P+EY     + AC
Sbjct: 218 DASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKAC 277

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           + L   D G Q+  L +K+    N+I   +  D++++C  L+ + R+F Q++R D A  N
Sbjct: 278 SSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWN 337

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
           V+I+     G+ + A+ +F  M      P   +L  +L +   P  +  G Q HS  IK 
Sbjct: 338 VIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKC 397

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDV 434
           GF ++  V +SL+ MY     +     +F    +K D VSWN I+    Q+ +  E L +
Sbjct: 398 GFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRL 457

Query: 435 FEELLEEGLPPDRITLAAVLLAC 457
           F+ +L     PD IT+  +L  C
Sbjct: 458 FKLMLVSECEPDHITMGNLLRGC 480



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 167/321 (52%), Gaps = 7/321 (2%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           S+  S   G++IH  ++ S     + +L N ++ MYGK G L  A  VF  M E +++S+
Sbjct: 75  SSSRSLAQGRKIHDHILNSNCKY-DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSY 133

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S+I+G   +G    A+  +  M  +   PD++    +I AC    ++  GKQ+ A  +K
Sbjct: 134 TSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIK 193

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +   S+ I  +A I ++ + N++ D+ ++F  +   D    + +I+ + + GF   AL  
Sbjct: 194 LESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSH 253

Query: 335 FQLMLREDI-RPTEFTLSCVL---SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            + ML   +  P E+     L   SS+  P  ++GSQ H + IK     NA+   SL +M
Sbjct: 254 LKEMLSFGVFHPNEYIFGSSLKACSSLLRP--DYGSQIHGLCIKLELTGNAIAGCSLCDM 311

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YA+ G +DS+  +F ++++ D  SWN I+ GL  NG A E + VF E+   G  PD I+L
Sbjct: 312 YARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISL 371

Query: 451 AAVLLACNYGGFVDKGMLVFS 471
            ++L A      + +GM + S
Sbjct: 372 RSLLCAQTKPMALCQGMQIHS 392



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 167/379 (44%), Gaps = 43/379 (11%)

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNL 262
           +  EEL     NSL   C NS Y E AL+ F ++ + S +     T   +I AC+  R+L
Sbjct: 25  IKTEELMNDHINSL---CRNSFYRE-ALEAFDFAQKNSSFKIRLRTYISLICACSSSRSL 80

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            +G+++    +      ++I+ +  + ++ KC  L D+  +F+ +   +      +I+ Y
Sbjct: 81  AQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGY 140

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNA 381
            + G    A+ L+  ML+ D+ P +F    ++ +      V  G Q H+  IK    S+ 
Sbjct: 141 SQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHL 200

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           +  ++L+ MY +   +  ++++F  +  +DL+SW++I+ G +Q G   E L   +E+L  
Sbjct: 201 IAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSF 260

Query: 442 GL-PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           G+  P+     + L AC+            S ++ +YG    + H  CI     +    G
Sbjct: 261 GVFHPNEYIFGSSLKACS------------SLLRPDYG---SQIHGLCI-----KLELTG 300

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
            AI          GCS+ +       +Y      ++       ++ P    ++++    A
Sbjct: 301 NAI---------AGCSLCD-------MYARCGFLDSARRVFNQIERPDTASWNVIIAGLA 344

Query: 561 MRGRWEAIVRVKKVMRKNG 579
             G  +  V V   MR +G
Sbjct: 345 NNGYADEAVSVFSEMRNSG 363


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/623 (29%), Positives = 320/623 (51%), Gaps = 41/623 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C      D    +HGH+ K G++ H    N  + +Y++FG                
Sbjct: 187 IIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFG---------------- 230

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           +  A  VF  I   D++SW SMI+G+   GY   AL +F  M  
Sbjct: 231 ---------------QIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFR 275

Query: 141 QGV-RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           QGV +P+ F F  + S   S      G+QI G   + GL   NV  G SL DMY K G L
Sbjct: 276 QGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLG-RNVFAGCSLCDMYAKFGFL 334

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A   F  +E  D++SWN++I+   NS   E A+  F  M + G  PD+ T   ++ AC
Sbjct: 335 PSAKRAFYQIESPDLVSWNAIIAALANSDVNE-AIYFFCQMIHMGLMPDDITFLNLLCAC 393

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
                L++G Q+ +  +K+G    + V ++ + +++KC+ L D+  +F+ + +  +    
Sbjct: 394 GSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSW 453

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N ++S   ++     A  LF+LML  + +P   T++ +L +   +  +E G+Q H  ++K
Sbjct: 454 NAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVK 513

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG   +  V++ L++MYAK G +  +  +F      D+VSW+++++G  Q G   E L++
Sbjct: 514 SGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNL 573

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +   G+ P+ +T   VL AC++ G V++G  +++ M+ E G+ P  EH +C++DLL 
Sbjct: 574 FRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLA 633

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A +      F P  ++W+++L +   +G+V + E  AE ++ L   +     L
Sbjct: 634 RAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVL 693

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A  G W+ + R++ +M++ G+ KV G SWI +K++I+ F + +  H     IY +
Sbjct: 694 LSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQIHVFFSEDSSHPQRGNIYTM 753

Query: 615 LRLLTWEMEDEGCVYLECDKLDV 637
           L  L  +M D+G  Y  C +LD+
Sbjct: 754 LEDLWLQMLDDG--YDPCQRLDI 774



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 171/339 (50%), Gaps = 8/339 (2%)

Query: 136 SKMQLQGVRPSGFTFSILLST-VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           S +QL+   PS +   IL  T V S  +GK+IH  +++S     ++VL N +++MYGK G
Sbjct: 74  SSIQLE---PSTYVNLILACTNVRSLKYGKRIHDHILKSNCQ-PDLVLQNHILNMYGKCG 129

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A   F  M+   ++SW  +ISG   +G    A+  +  M  SGY PD+ T   +I 
Sbjct: 130 SLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIK 189

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC    ++D G Q+    +K G+  + I  +A I +++K  ++  +  +F  +   D   
Sbjct: 190 ACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLIS 249

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSI-PIPPVEHGSQFHSMA 372
              MI+ + + G+   AL LF+ M R+ + +P EF    V S+   +   E G Q   M 
Sbjct: 250 WASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMC 309

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            K G   N     SL +MYAK G + S+   F +++  DLVSWN I+  L  N    E +
Sbjct: 310 AKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNEAI 368

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
             F +++  GL PD IT   +L AC     +++GM + S
Sbjct: 369 YFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHS 407


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 183/607 (30%), Positives = 311/607 (51%), Gaps = 35/607 (5%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C  ++  C         + IHG + K GF  + ++G   + +YSR G             
Sbjct: 13  CVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSG------------- 59

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                             N D A KVF+ +   D+   N MI  Y   GY   A+ +F  
Sbjct: 60  ------------------NFDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIY 101

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +   G+ P+ +TF+ ++ST +    GKQ+HG  ++ G+ L   V GN++I MYGK G++ 
Sbjct: 102 LISVGLDPNDYTFTNIISTCNVE-EGKQLHGLAVKYGVLLQTSV-GNAVITMYGKNGMVE 159

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M + ++ISW +LISG   +GYGE A+D F  +R  G   D   ++ +++ C+
Sbjct: 160 EAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCS 219

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           + +NLD G Q+  L +K+G+  +  + +A IDL++KC   + +  +F  L     A  N 
Sbjct: 220 ECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNA 279

Query: 318 MISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKS 375
           ++  +      E    +F   LR   I+P   + S +LS S     +  G   H+ +IK+
Sbjct: 280 ILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKT 339

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF  +  V+++L+ MYAK G ++ + + F  +   D +SWN I+   + +G+  + L ++
Sbjct: 340 GFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLY 399

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           +E+ E+G  PD IT+  +L AC Y G  + G+ +F+ M+ +YG+ P  EHYAC++DLL +
Sbjct: 400 QEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGR 459

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG L +A+DI +  PF     +W +++    + GD+ L +  ++ ++DL       Y L+
Sbjct: 460 AGYLSQAMDIINRSPFSESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLV 519

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  G  +   +V+  M+   ++K  G SW+ I N ++ F A    H    +IY  L
Sbjct: 520 SNIYAGEGMIDEASKVRTTMKDLKLSKEAGSSWVEIDNMVHYFVASGTDHPESIEIYARL 579

Query: 616 RLLTWEM 622
            LL  EM
Sbjct: 580 DLLRNEM 586



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G   +E+T  +++ AC+ + ++  G+Q+    +K GF  N  V ++ I ++S+    +++
Sbjct: 5   GEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEA 64

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            ++F  +   D   +N MI  YG+ G+ + A+ +F  ++   + P ++T + ++S+    
Sbjct: 65  EKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC--- 121

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            VE G Q H +A+K G      V ++++ MY K G ++ +  +F  ++K++L+SW  ++ 
Sbjct: 122 NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALIS 181

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           G T+NG   + +D F EL   G+  D   LA +L  C+    +D G
Sbjct: 182 GYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLG 227



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S L+ A +   S+S+ S+L+    +  S    + +H +  K GF  H  + N  + +Y++
Sbjct: 299 SQLRLAGIKPDSVSF-SRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAK 357

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSM 118
            G  +D  Q F+ +   +CISWN  +         + AL ++ E+ E    PD ++   +
Sbjct: 358 CGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVI 417

Query: 119 ISGYASCGYSDYALEMFSKMQLQ-GVRP 145
           +      G S+  L +F+ M+ + G++P
Sbjct: 418 LQACTYSGLSEDGLHLFNTMESKYGIQP 445


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 289/576 (50%), Gaps = 40/576 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    SF      H H  K G +   ++GN  L LY + G              
Sbjct: 64  ASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGP------------- 110

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            NL  A +VFD +   D++SW SMI+GY        +LE+F +M
Sbjct: 111 -----------------NLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEM 153

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G+ P+GFT S ++   S       GK  HG ++  G  L++V+   +LIDMYG+   
Sbjct: 154 LGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVI-STALIDMYGRNSA 212

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           +  A  VF+ + + D I W S+IS    +   + AL  FYSM R  G SPD +T   V+ 
Sbjct: 213 VDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLT 272

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  L +GK+V A  +  G   N  V S+ +D++ KC  +  S  +F+++   +   
Sbjct: 273 ACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVS 332

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
              ++  Y + G  E  + +F    RE  +   ++   VL +   +  V  G + H   +
Sbjct: 333 WTALLGGYCQNGDFESVIRIF----REGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYV 388

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K     + V  S+L+++YAK G ID +  IFV++  R+L++WN+++ G  QNGR  E   
Sbjct: 389 KRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQ 448

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F+E++EEG+ PD I+   VL AC++ G VD+G   F+AM E Y + PG EHY C+IDLL
Sbjct: 449 LFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLL 508

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A ++      +   S+W  +L A A        E +A++ ++L+    L Y 
Sbjct: 509 GRAGLLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYV 568

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            L   Y   GRW+  V+++ +M K G+ K+ G SWI
Sbjct: 569 YLANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWI 604


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 192/639 (30%), Positives = 335/639 (52%), Gaps = 57/639 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +K A V   + +Y + L   C+  + F     +   + K G  +   +GN  + +YSR G
Sbjct: 90  MKSAGVVFDAFTYSTAL-SFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSG 148

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +                       RG         A +VFDE+P  D++SWNS++SG + 
Sbjct: 149 S----------------------FRG---------ARRVFDEMPFKDMISWNSLLSGLSQ 177

Query: 125 CGYSDY-ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSL 177
            G   + A+ +F  M  +GV     +F+   S +++ CH       +QIHG  I+ G   
Sbjct: 178 EGTFGFEAVLIFRDMMREGVELDHVSFT---SVITTCCHETDLKLARQIHGLCIKRGYE- 233

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           S + +GN L+  Y K GVL     VF  M E +++SW ++IS   +      A+  F +M
Sbjct: 234 SLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMISSNRDD-----AVSIFLNM 288

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R  G  P+E T   ++NA      + +G ++  L +K GF+S   V ++ I +++K   L
Sbjct: 289 RLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEAL 348

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           ED+ + F+ +   +    N MIS + + GF   AL++F L    +  P E+T   VL++I
Sbjct: 349 EDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMF-LSATAETMPNEYTFGSVLNAI 407

Query: 358 PIP---PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                  V+HG + H+  +K G +S  VV+S+L++MYAK G+I+ S ++F ++ +R+   
Sbjct: 408 AFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQFV 467

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W +I+   + +G     +++F E+++E + PD +T  +VL ACN  G VDKG  + + M 
Sbjct: 468 WTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMI 527

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           E+Y + P  EHY+C++D+L +AG+L +A ++ S +P  PG S+ +S+L +  ++G+VK+ 
Sbjct: 528 EDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMG 587

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN- 593
             VAE  M+++      Y  +   YA + +W+    ++K MRK  ++K  G SWI + + 
Sbjct: 588 AKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWIDVGDT 647

Query: 594 ----RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
                +  F++G+  H    +IY ++ ++  EM  EG V
Sbjct: 648 EGSLTMQGFSSGDKSHPKSDEIYRMVEIVGLEMNLEGKV 686



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 232/490 (47%), Gaps = 46/490 (9%)

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C+S N  +    K+   D AL +F+ + +PDVVSWN+++SG+     +  AL    +M+ 
Sbjct: 37  CVS-NAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTILSGFDD---NQIALNFVVRMKS 92

Query: 141 QGVRPSGFTFSILLS-TVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV    FT+S  LS  V S     G Q+  ++++SGL  S++V+GNS I MY + G   
Sbjct: 93  AGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLE-SDLVVGNSFITMYSRSGSFR 151

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A  VF  M   D+ISWNSL+SG    G +G  A+  F  M   G   D  + + VI  C
Sbjct: 152 GARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTC 211

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +L   +Q+  L +K G+ S   V +  +  +SKC  LE    +F Q+   +     
Sbjct: 212 CHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWT 271

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKS 375
            MIS+       + A+ +F  M  + + P E T   +L+++     ++ G + H + IK+
Sbjct: 272 TMISSN-----RDDAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKT 326

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF S   V +S + MYAK  +++ + + F  +  R+++SWN ++ G  QNG + E L +F
Sbjct: 327 GFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMF 386

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-------- 487
                E + P+  T  +VL A               A  E+  V  G+  +A        
Sbjct: 387 LSATAETM-PNEYTFGSVLNAI--------------AFAEDISVKHGQRCHAHLLKLGLN 431

Query: 488 -------CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                   ++D+  + G + ++  + + M  Q    +W SI+ A + +GD     N+   
Sbjct: 432 SCPVVSSALLDMYAKRGNINESEKVFNEMS-QRNQFVWTSIISAYSSHGDFNSVMNLFHE 490

Query: 541 MMDLQLPSPL 550
           M+   +   L
Sbjct: 491 MIKENVAPDL 500



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 7/215 (3%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           DE T+ + + AC    +L +G Q+   S   GF S   V +A + ++ K  R ++++ +F
Sbjct: 2   DEVTLCLALKACRG--DLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIF 59

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVE 363
           E L   D    N ++S +      ++AL     M    +    FT S  LS  +      
Sbjct: 60  ENLVDPDVVSWNTILSGFDD---NQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFR 116

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q  S  +KSG +S+ VV +S + MY+++GS   +  +F ++  +D++SWN+++ GL+
Sbjct: 117 LGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLS 176

Query: 424 QNGR-AAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           Q G    E + +F +++ EG+  D ++  +V+  C
Sbjct: 177 QEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTC 211


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 305/542 (56%), Gaps = 13/542 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM---QLQGVRPSGFTFSI 152
           +L+ A K FDE+ +  +V+WN++I+GY+  G    AL+++  M     +G++P   TFS 
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L   + V     G++I    + SG + S+ ++ N+LI+MY K G L  A  VF  ++  
Sbjct: 169 ALYACTVVGDISQGREIEARTVASGYA-SDSIVQNALINMYSKCGSLESARKVFDRLKNR 227

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+I+WN++ISG    G    AL+ F  M  +   P+  T   ++ ACT L +L++G+ + 
Sbjct: 228 DVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH 287

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               + G+ S+ ++ +  +++++KC+  LE++ ++FE++   D    N++I  Y +YG  
Sbjct: 288 RKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQA 347

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSL 387
           + AL++F+ M  E++ P E TLS VLS+  +   +  G   H++       ++ V+ +SL
Sbjct: 348 KDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSL 407

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           M MY + GS+D +  +F  +  + LVSW+T++    Q+G +   L+ F ELL+EGL  D 
Sbjct: 408 MNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADD 467

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T+ + L AC++GG + +G+  F +M  ++G+ P   H+ C++DLL +AG+L  A ++  
Sbjct: 468 VTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIH 527

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL-PYSLLTQAYAMRGRWE 566
            MPF P    W S+L    ++ D K    VA+++ +L+        +LL+  YA  GRW+
Sbjct: 528 DMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD 587

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V+K   +    K  GCS+I I + ++ F AG+  H   + I   ++ L+ +M+D G
Sbjct: 588 ---DVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAG 644

Query: 627 CV 628
            V
Sbjct: 645 YV 646



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 214/387 (55%), Gaps = 8/387 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  ++  AL VF  I  P+ VSW  +++ +A  G+   AL  + +M L+G+RP G  F +
Sbjct: 4   KCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVV 63

Query: 153 LLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +   SS+   KQ   +H  ++ + L   +++LG +LI MY +   L  A   F  M + 
Sbjct: 64  AIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKK 123

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM---RYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +++WN+LI+G   +G    AL  +  M      G  PD  T S  + ACT + ++ +G+
Sbjct: 124 TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGR 183

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++ A +V  G+ S+SIV +A I+++SKC  LE + ++F++L   D    N MIS Y + G
Sbjct: 184 EIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQG 243

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               ALELFQ M   D +P   T   +L++   +  +E G   H    + G++S+ V+ +
Sbjct: 244 AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGN 303

Query: 386 SLMEMYAK-TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
            L+ MY K + S++ + ++F ++  RD+++WN +++   Q G+A + LD+F+++  E + 
Sbjct: 304 VLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVA 363

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS 471
           P+ ITL+ VL AC   G   +G  V +
Sbjct: 364 PNEITLSNVLSACAVLGAKRQGKAVHA 390



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 182/359 (50%), Gaps = 11/359 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +L++A KVFD +   DV++WN+MISGYA  G +  ALE+F +M     +P+  TF  
Sbjct: 210 KCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL-GVLYYAFGVFLNMEE 208
           LL+  ++      G+ IH  +   G   S++V+GN L++MY K    L  A  VF  M  
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVREDGYE-SDLVIGNVLLNMYTKCSSSLEEARQVFERMRT 328

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+I+WN LI      G  + ALD F  M+    +P+E T+S V++AC  L    +GK V
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            AL       ++ ++ ++ ++++++C  L+D+V +F  +        + +I+ Y ++G  
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHS 448

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASS 386
              LE F  +L+E +   + T+   LS+      ++ G Q F SM    G   +      
Sbjct: 449 RTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLC 508

Query: 387 LMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGL---TQNGRAAETLDVFEELLEE 441
           ++++ ++ G ++++  +   +    D V+W +++ G        RAA   D   EL  E
Sbjct: 509 MVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESE 567



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 158/293 (53%), Gaps = 5/293 (1%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MYGK G +  A  VF  +E  + +SW  +++    +G+   AL  +  M   G  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQL 307
             + I  C+  ++L +G+ + A+ ++   L   I+L +A I ++++C  LE + + F+++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLR---EDIRPTEFTLSCVL-SSIPIPPVE 363
            +      N +I+ Y R G    AL+++Q M+    E ++P   T S  L +   +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G +  +  + SG+ S+++V ++L+ MY+K GS++S+ ++F +L  RD+++WNT++ G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           + G A + L++F+ +      P+ +T   +L AC     +++G  +   ++E+
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 51/215 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +    K +H  +      A   L N  +++Y+R G+ DD + +F  I  
Sbjct: 370 SNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRD 429

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +                               SW+++I+ YA  G+S   LE F ++
Sbjct: 430 KSLV-------------------------------SWSTLIAAYAQHGHSRTGLEHFWEL 458

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS-----------LI 187
             +G+     T   ++ST+ SAC     HG M++ G+     ++G+            ++
Sbjct: 459 LQEGLAADDVT---MVSTL-SACS----HGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMV 510

Query: 188 DMYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGC 221
           D+  + G L  A  +  +M  L D ++W SL+SGC
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGC 545


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/561 (30%), Positives = 305/561 (54%), Gaps = 13/561 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L    K+  LD+A ++F E+   D VS+N MI+GYA+ G ++ A+E+F +MQ  G +
Sbjct: 179 NTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFK 238

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           PS FTF+ ++S    +     G+QIHG ++++   + NV +GN+ +D Y K   +     
Sbjct: 239 PSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSF-IRNVFVGNAFLDFYSKHDCVNEVRK 297

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M ELD +S+N +I+     G  + ++D F  ++++ +    +    +++      +
Sbjct: 298 LFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLD 357

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G+Q+ A  V      +  V ++ +D+++KC + E++ R+F +L          MIS 
Sbjct: 358 LQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISA 417

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSN 380
             + G  E  L+LF  M R ++   + T +CVL +S  +  +  G Q HS  I+SGF  N
Sbjct: 418 NVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGF-MN 476

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
                +L++MYA   SI  + + F ++ +R++V+WN ++    QNG    TL  FEE++ 
Sbjct: 477 VYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIM 536

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G  PD ++   +L AC++   V++G+  F+ M   Y + P  EHY  ++D LC++G+  
Sbjct: 537 SGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFD 596

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAY 559
           +A  +   MPF+P   +W S+L +  I+ +  L    A ++ +++ L    PY  ++  +
Sbjct: 597 EAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIF 656

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G+W+++V+VKK MR  G+ K+   SW+ IK++++ F+A + +H    +I   + +L 
Sbjct: 657 AEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLA 716

Query: 620 WEMEDEG------CVYLECDK 634
            +ME EG      C +   DK
Sbjct: 717 EQMEKEGYDPDISCAHQNVDK 737



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 244/511 (47%), Gaps = 10/511 (1%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           I   + K GF+  T   N  +   S  G      QL D++P +N  S +I + G +KS N
Sbjct: 30  IDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGN 89

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A ++FD+  E  VV+W +MI  Y+       A ++F++M   G +P   T+  LL+ 
Sbjct: 90  LTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG 149

Query: 157 VSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +     K   Q H  +++ G  L++ V  N+L+D Y K G L  A  +FL M   D +S
Sbjct: 150 CNDLEVAKELYQAHAQIVKLGHHLNHRVC-NTLLDSYFKTGGLDSARRLFLEMCGWDSVS 208

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N +I+G  N+G  E A++ F  M+  G+ P ++T + VI+A   L +   G+Q+    V
Sbjct: 209 FNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVV 268

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F+ N  V +A +D +SK + + +  +LF ++   D    NV+I+ Y   G  + +++
Sbjct: 269 KTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESID 328

Query: 334 LFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LFQ +         F    +LS +     ++ G Q H+  + S  D +  V++SL++MYA
Sbjct: 329 LFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYA 388

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G  + +  IF++L  R  V W  ++    Q G     L +F E+    +  D+ T A 
Sbjct: 389 KCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFAC 448

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC-IIDLLCQAGQLGKAIDITSTMPF 511
           VL A      +  G  + S +    G M    +  C ++D+      +  AI     M  
Sbjct: 449 VLKASANLASILLGKQLHSCVIRS-GFM--NVYSGCALLDMYANCASIKDAIKTFEEMS- 504

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMM 542
           +     W ++L A A  GD K T    E M+
Sbjct: 505 ERNVVTWNALLSAYAQNGDGKGTLKSFEEMI 535



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 188/393 (47%), Gaps = 39/393 (9%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           F + IHG + K  F  + ++GN  LD YS+    ++V +LF+E+P               
Sbjct: 259 FGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMP--------------- 303

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                           E D VS+N +I+ YA  G    ++++F ++Q        F F  
Sbjct: 304 ----------------ELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPT 347

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +LS  +S+     G+Q+H  ++ S ++  +  + NSL+DMY K G    A  +FL +   
Sbjct: 348 MLSIAASSLDLQMGRQLHAQVVVS-MADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSR 406

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
             + W ++IS     G  E  L  FY MR +  S D+ T + V+ A   L ++  GKQ+ 
Sbjct: 407 STVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLH 466

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +  ++ GF+ N     A +D+++ C  ++D+++ FE++   +    N ++S Y + G G+
Sbjct: 467 SCVIRSGFM-NVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGK 525

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSL 387
             L+ F+ M+    +P   +  C+L++      VE G + F+ M+            +++
Sbjct: 526 GTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAM 585

Query: 388 MEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           ++   ++G  D + ++  ++  + D + W +++
Sbjct: 586 VDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVL 618


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 210/682 (30%), Positives = 333/682 (48%), Gaps = 99/682 (14%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLY 60
           SS+L+   V+     Y  +L+  C S       +  +G L K GF ++   + N  L +Y
Sbjct: 15  SSFLQAMEVD--CRRYYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMY 72

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           SR G       LFDE+P +N  SWN  + G + S    T+L+ FD +PE D  SWN ++S
Sbjct: 73  SRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVS 132

Query: 121 GYASCGYSDYALEMFSKMQ----------LQGVRPSGF-----------TFS---ILLST 156
           G+A  G    A  +F+ M           L G   +G+            FS   I L+T
Sbjct: 133 GFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTT 192

Query: 157 VSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           V  AC        GKQIH  ++  G+   +  + +SL+++Y K G L  A  +   + E 
Sbjct: 193 VLKACAELEALKCGKQIHAQILIGGVECDSK-MNSSLVNVYAKCGDLRMASYMLEQIREP 251

Query: 210 D-------------------------------IISWNSLISGCFNSGYGELALDQFYSMR 238
           D                               +I WNS+ISG   +     AL  F  MR
Sbjct: 252 DDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR 311

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            +    D  T++ VINAC  L  L+ GKQ+   + K G + + +V S  +D++SKC    
Sbjct: 312 -NETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPM 370

Query: 299 DSVRLFEQLDRWDYAVINVMISTY---GRY-----------------------GFGE--- 329
           ++ +LF +++ +D  ++N MI  Y   GR                        GF +   
Sbjct: 371 EACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGC 430

Query: 330 --VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
               LE F  M + D+   E +LS V+S+   I  +E G Q  + A   G DS+ VV+SS
Sbjct: 431 TVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSS 490

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+++Y K G ++    +F  + K D V WN+++ G   NG+  E +D+F+++   G+ P 
Sbjct: 491 LIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPT 550

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
           +IT   VL ACNY G V++G  +F +MK ++G +P +EH++C++DLL +AG + +AI++ 
Sbjct: 551 QITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLV 610

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MPF    S+W SILR     G   + +  AE++++L+  + + Y  L+  +A  G WE
Sbjct: 611 EEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWE 670

Query: 567 AIVRVKKVMRKNGINKVTGCSW 588
           +   V+K+MR+N + K  G SW
Sbjct: 671 SSALVRKLMRENNVTKNPGSSW 692


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 173/535 (32%), Positives = 293/535 (54%), Gaps = 17/535 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A ++FD +PE +VV+W ++++GY         LE+F +M   G  PS +T    L+   +
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +C    GKQ+HG  I+ G   S   +GNSL  +Y KLG L  A   F  + E ++I+W +
Sbjct: 152 SCDVDLGKQVHGYAIKYGAE-SITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 217 LISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +IS C  +    EL +  F  M   G  P+E+T++ V++ C    +L+ GKQV A S K+
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKI 270

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR----------- 324
           G  +N  V ++T+ L+ +    ++++RLFEQ++       N MIS Y +           
Sbjct: 271 GCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQA 330

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVV 383
              G  AL +F+ + R  ++P  FT S +LS    +  +E G Q H+  IKSGF S+ VV
Sbjct: 331 RSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVV 390

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L+ MY K G I  + + F+++  R  V+W +++ G +Q+G+  E + +FEE+   G+
Sbjct: 391 NSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGV 450

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P+ IT  ++L AC+Y G V++    F  MK+EY + P  +HY C+ID+  + G++  A 
Sbjct: 451 RPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAF 510

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
                  F+P  +IW S++     +G+++L    A+++++L+      Y LL   Y    
Sbjct: 511 SFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTE 570

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           RW+ + RV+K+M++  +  +   SWI IK+++Y F A +  H    ++Y +L  L
Sbjct: 571 RWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENL 625



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 218/457 (47%), Gaps = 62/457 (13%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           ++ CL+    D  K +HG+  K G  + T +GN    LY++ G+ D  L+ F  IP+KN 
Sbjct: 146 LNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKN- 204

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE----MFSK 137
                                         V++W +MIS   +C   +  +E    +F  
Sbjct: 205 ------------------------------VITWTTMIS---ACAEDEECVELGMSLFID 231

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M + GV P+ FT + ++S   +      GKQ+     + G   +N+ + NS + +Y + G
Sbjct: 232 MLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCE-TNLPVKNSTMYLYLRKG 290

Query: 195 VLYYAFGVFLNMEELDIISWNSLISG---CFNSGYGEL--------ALDQFYSMRYSGYS 243
               A  +F  ME+  II+WN++ISG     +S   +L        AL  F  ++ S   
Sbjct: 291 ETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMK 350

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PD +T S +++ C+ +  L++G+Q+ A ++K GFLS+ +V SA +++++KC  ++D+ + 
Sbjct: 351 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKA 410

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-V 362
           F ++    +     MIS Y ++G  + A++LF+ M    +RP E T   +LS+      V
Sbjct: 411 FLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLV 470

Query: 363 EHGSQFHSMAIKSGFDSNAVVA--SSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTI 418
           E    +  M +K  +    VV     +++M+ + G ++ +   F+K    + +   W+++
Sbjct: 471 EEAEHYFDM-MKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFS-FIKRTGFEPNEAIWSSL 528

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           + G   +G         ++LLE  L P  I    +LL
Sbjct: 529 VAGCRSHGNMELAFYAADKLLE--LKPKGIETYILLL 563



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 38/234 (16%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K  V K  L   S ++  C +  + +  + IH    K GF +   + +  +++Y++ G  
Sbjct: 345 KRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCI 404

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
            D  + F E+P +  ++W                                SMISGY+  G
Sbjct: 405 QDANKAFLEMPTRTFVTW-------------------------------TSMISGYSQHG 433

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA--CHGKQIHGSMIRSGLSLSNVVLG- 183
               A+++F +M+L GVRP+  TF  LLS  S A      + +  M++    +  VV   
Sbjct: 434 QPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHY 493

Query: 184 NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYS 236
             +IDM+ +LG +  AF        E +   W+SL++GC + G  ELA   FY+
Sbjct: 494 GCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELA---FYA 544



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 2/161 (1%)

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-I 357
           D+ RLF+ +   +      +++ Y       + LE+F  ML     P+ +TL   L++ +
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               V+ G Q H  AIK G +S   + +SL  +YAK GS+DS+   F ++ ++++++W T
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 418 IMMGLTQNGRAAET-LDVFEELLEEGLPPDRITLAAVLLAC 457
           ++    ++    E  + +F ++L +G+ P+  TL +V+  C
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 251


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 180/604 (29%), Positives = 315/604 (52%), Gaps = 28/604 (4%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +     K +HG   KL  +    + N  +D+YS+ G  +D   +F     KN +SW
Sbjct: 299 CARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSW 358

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G   + ++    K FD + +        M++G       +  +       L  V 
Sbjct: 359 NTMVGGFSAAGDIH---KTFDLLRQ--------MLAGGGDLRADEVTI-------LNAV- 399

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           P  F  S+L +        K++H   ++     +N ++ N+ +  Y K G L YA  VF 
Sbjct: 400 PVCFEESVLPNL-------KELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFC 452

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           ++    + SWN+LI G   S    L+LD ++ M+ SG  PD +T+  +++AC+++++L  
Sbjct: 453 SIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKL 512

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK+V  L ++     +S V  + + L+  C  L  +  LF+ ++       N M++ Y +
Sbjct: 513 GKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQ 572

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            GF E AL LF+ M+   ++P E ++  V  +   +P +  G + H  A+K   + NA +
Sbjct: 573 NGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFI 632

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           A S+++MYAK GS+  S ++F  L +R + SWN ++MG   +GRA E + +FEE+   G 
Sbjct: 633 ACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGH 692

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +T   VL ACN+ G V +G+     MK  +G+ P  +HYAC+ID+L +AG+L +A+
Sbjct: 693 CPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEAL 752

Query: 504 DI-TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            I T  M  +PG  IW  +L +  I+ ++++ E +A ++   +   P  Y LL+  YA  
Sbjct: 753 KIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGS 812

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G+W+ + +V++ M++  + K  GCSWI +  ++++F AGE    G ++I  +  +L  E+
Sbjct: 813 GKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREI 872

Query: 623 EDEG 626
              G
Sbjct: 873 GKMG 876



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 193/376 (51%), Gaps = 19/376 (5%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLST 156
           D +  VFD + + ++  WN++IS Y+        LEMF KM  + G+ P  FTF  ++  
Sbjct: 134 DDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKA 193

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              VS    G  +HG ++++ L + +V + N+L+  YG  G +  A  VF  M E +++S
Sbjct: 194 CAGVSEVQVGLAVHGLVVKTRL-VEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVS 252

Query: 214 WNSLISGCFNSGYGE---LALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVF 269
           WNS+I    ++G  E   L L Q         ++PD  T++ V+  C + R +  GK V 
Sbjct: 253 WNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVH 312

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L++K+      +V +A +D++SKC  + D+  +F+  +  +    N M+  +   G   
Sbjct: 313 GLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIH 372

Query: 330 VALELFQLMLR--EDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGF-DSNAV 382
              +L + ML    D+R  E T   +L+++P+      + +  + H  ++K  F  +N +
Sbjct: 373 KTFDLLRQMLAGGGDLRADEVT---ILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNEL 429

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           VA++ +  YAK GS+  +  +F  +  + + SWN ++ G +Q+     +LD + ++   G
Sbjct: 430 VANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSG 489

Query: 443 LPPDRITLAAVLLACN 458
           L PD  T+ ++L AC+
Sbjct: 490 LLPDLFTVCSLLSACS 505



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 219/460 (47%), Gaps = 28/460 (6%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI-LLSTVS 158
           AL+VF  +PE ++VSWNSMI  ++  G S+    +  +M ++      FT  +  L+TV 
Sbjct: 238 ALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQM-MEKDDEIAFTPDVATLATVL 296

Query: 159 SACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             C        GK +HG  ++  L    VV+ N+L+DMY K G +  A  +F      ++
Sbjct: 297 PVCARDREIGVGKGVHGLAMKLSLD-KEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNV 355

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISIVINACTKLRNLDKGKQVF 269
           +SWN+++ G   +G      D    M   G     DE TI   +  C +   L   K++ 
Sbjct: 356 VSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELH 415

Query: 270 ALSVKVGFL-SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
             S+K  F+ +N +V +A +  ++KC  L  + R+F  +        N +I  Y +    
Sbjct: 416 CYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDP 475

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            ++L+ +  M    + P  FT+  +LS+   I  ++ G + H + I++  + ++ V  SL
Sbjct: 476 RLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISL 535

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + +Y   G + ++  +F  ++ + LVSWNT++ G  QNG     L +F +++  G+ P  
Sbjct: 536 LSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCE 595

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYG-----VMPGEEHYAC-IIDLLCQAGQLGK 501
           I++ +V  AC+    +  G       +E +G     ++      AC +ID+  + G + +
Sbjct: 596 ISMMSVFGACSLLPSLRLG-------REAHGYALKCLLEDNAFIACSVIDMYAKNGSVME 648

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +  + + +  +   + W +++    I+G  K    + E M
Sbjct: 649 SFKVFNGLK-ERSVASWNAMVMGYGIHGRAKEAIKLFEEM 687



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 141/306 (46%), Gaps = 14/306 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G++IH  +  S    ++ VL   +I MY   G    +  VF  + + ++  WN++IS   
Sbjct: 100 GRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 223 NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +      L+ F  M   SG  PD +T   V+ AC  +  +  G  V  L VK   + + 
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDV 219

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A +  +     + D++R+F+ +   +    N MI  +   G  E    L   M+ +
Sbjct: 220 FVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEK 279

Query: 342 D----IRPTEFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           D      P   TL+ VL   P+   +     G   H +A+K   D   VV ++LM+MY+K
Sbjct: 280 DDEIAFTPDVATLATVL---PVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSK 336

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLA 451
            G I+ +  IF   + +++VSWNT++ G +  G   +T D+  ++L  G  L  D +T+ 
Sbjct: 337 CGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTIL 396

Query: 452 AVLLAC 457
             +  C
Sbjct: 397 NAVPVC 402



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 57/303 (18%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
            + CS L+  C   KS    K +HG + +      +++    L LY   G       LFD
Sbjct: 495 FTVCS-LLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFD 553

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +  K  +SWN                                 ++GY   G+ + AL +
Sbjct: 554 AMEDKTLVSWNTM-------------------------------VNGYLQNGFPERALSL 582

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLI 187
           F +M L GV+P      I + +V  AC        G++ HG  ++  L   N  +  S+I
Sbjct: 583 FRQMVLYGVQPC----EISMMSVFGACSLLPSLRLGREAHGYALKCLLE-DNAFIACSVI 637

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G +  +F VF  ++E  + SWN+++ G    G  + A+  F  M+ +G+ PDE 
Sbjct: 638 DMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDEL 697

Query: 248 TISIVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           T   V+ AC         L  LD+ K +F ++  +         +  ID+  +  +L+++
Sbjct: 698 TFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKH------YACVIDMLVRAGKLDEA 751

Query: 301 VRL 303
           +++
Sbjct: 752 LKI 754



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 362 VEHGSQFHSMAIKSGFDSNA-VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
           ++ G + H +  +S   SN  V+ + ++ MY+  GS D S  +F  L K++L  WN ++ 
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 421 GLTQNGRAAETLDVFEELL-EEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMK 474
             ++N      L++F +++ E GL PD  T   V+ AC        G    G++V + + 
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLV 216

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           E+  V         ++      G +  A+ +   MP +   S W S++R   ++ D  L+
Sbjct: 217 EDVFVSNA------LVSFYGTNGSVSDALRVFKIMPERNLVS-WNSMIR---VFSDNGLS 266

Query: 535 E 535
           E
Sbjct: 267 E 267


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 167/548 (30%), Positives = 302/548 (55%), Gaps = 5/548 (0%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L    K   LD A ++F+ +P+ D+V+WN MISG    G    A  +F  MQ  G R
Sbjct: 281 NTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGAR 340

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   LL  ++       GK++HG ++R+ +++ +V L ++L+D+Y K   +  A  
Sbjct: 341 PDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNM-DVFLVSALVDIYFKCRDVRMAQN 399

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           ++     +D++  +++ISG   +G  E AL  F  +      P+  TI+ V+  C  +  
Sbjct: 400 LYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAA 459

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G+Q+    ++  +     V SA +D+++KC RL+ S  +F ++ + D    N MIS+
Sbjct: 460 LPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISS 519

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           + + G  + AL+LF+ M  E I+    T+S  LS+   +P + +G + H + IK    ++
Sbjct: 520 FSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKAD 579

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
               S+L++MYAK G+++ +  +F  +  ++ VSWN+I+     +G   E++ +   + E
Sbjct: 580 IFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQE 639

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           EG  PD +T  A++ AC + G V++G+ +F  M ++Y + P  EH+AC++DL  ++G+L 
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLD 699

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           KAI   + MPF+P   IW ++L A  ++ +V+L +  ++ +  L   +   Y L++   A
Sbjct: 700 KAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINA 759

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           + GRW+ + +V+++M+ N I K+ G SW+ + N  + F A +  H   + IY  L+ L  
Sbjct: 760 VAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQ 819

Query: 621 EMEDEGCV 628
           E+ +EG V
Sbjct: 820 ELREEGYV 827



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 154/570 (27%), Positives = 276/570 (48%), Gaps = 53/570 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    + +H     +G     Y+G+  + +Y+  G   +    FD IP+++
Sbjct: 147 VVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERD 206

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C+ WN+ + G +K+ ++D A++                               +F  M+ 
Sbjct: 207 CVLWNVMMDGCIKAGDVDGAVR-------------------------------LFRNMRA 235

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T +  LS  ++      G Q+H   ++ GL    V + N+L+ MY K   L 
Sbjct: 236 SGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLE-PEVAVANTLLAMYAKCQCLD 294

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ +F  M + D+++WN +ISGC  +G    A   FY M+ SG  PD  T+  ++ A T
Sbjct: 295 DAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALT 354

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  L +GK+V    V+     +  ++SA +D++ KC  +  +  L++     D  + + 
Sbjct: 355 DLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGST 414

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL---SSIPIPPVEHGSQFHSMAIK 374
           MIS Y   G  E AL++F+ +L + I+P   T++ VL   +S+   P+  G Q H   ++
Sbjct: 415 MISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPL--GQQIHGYVLR 472

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           + ++    V S+LM+MYAK G +D S  IF+K+ ++D V+WN+++   +QNG+  E LD+
Sbjct: 473 NAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDL 532

Query: 435 FEELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           F ++  EG+  + IT++A L AC      Y G    G+ +   +K +          + +
Sbjct: 533 FRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFA------ESAL 586

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PS 548
           ID+  + G L  A+ +   MP +   S W SI+ A   +G VK + ++   M +    P 
Sbjct: 587 IDMYAKCGNLELALRVFEFMPDKNEVS-WNSIISAYGAHGLVKESVSLLHGMQEEGYKPD 645

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            + +  L  A A  G  E  V++ + M K 
Sbjct: 646 HVTFLALISACAHAGLVEEGVQLFQCMTKK 675



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 180/366 (49%), Gaps = 8/366 (2%)

Query: 100 ALKVFDEIPEPDVVS---WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           A+ VF  +P     S   WN +I G+ + G    A+  + KM      PS    ++    
Sbjct: 89  AVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVV 148

Query: 157 VSSACHGKQIHGSMIRS---GLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            S A  G    G ++      + L+N V +G++L+ MY   G+L  A   F  + E D +
Sbjct: 149 KSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCV 208

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WN ++ GC  +G  + A+  F +MR SG  P+  T++  ++ C    +L  G Q+ +L+
Sbjct: 209 LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLA 268

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK G      V +  + +++KC  L+D+ RLFE + + D    N MIS   + G    A 
Sbjct: 269 VKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAF 328

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M R   RP   TL  +L ++  +  ++ G + H   +++  + +  + S+L+++Y
Sbjct: 329 GLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIY 388

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K   +  +  ++      D+V  +T++ G   NG + E L +F  LLE+ + P+ +T+A
Sbjct: 389 FKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIA 448

Query: 452 AVLLAC 457
           +VL  C
Sbjct: 449 SVLPGC 454



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 142/293 (48%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  +    + IHG++ +  +    Y+ +  +D+Y++ G              
Sbjct: 448 ASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCG-------------- 493

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             LD +  +F ++ + D V+WNSMIS ++  G    AL++F +M
Sbjct: 494 -----------------RLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQM 536

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            ++G++ +  T S  LS  +S     +GK+IHG  I+  +  +++   ++LIDMY K G 
Sbjct: 537 CMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIK-ADIFAESALIDMYAKCGN 595

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  M + + +SWNS+IS     G  + ++   + M+  GY PD  T   +I+A
Sbjct: 596 LELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISA 655

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQL 307
           C     +++G Q+F    K   ++  +   +  +DL+S+  +L+ +++    +
Sbjct: 656 CAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADM 708


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/544 (30%), Positives = 295/544 (54%), Gaps = 9/544 (1%)

Query: 93  KSDNLDTALKVF-DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K + ++ AL +F D   E +V ++N++ISG+ + G+ +   E + KM+ +GV P  FTF 
Sbjct: 4   KCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFP 63

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             +         K+IHG + + GL L +V +G++L++ Y K G++ +A   F  +   D+
Sbjct: 64  CAIKACLDVLEIKKIHGLLFKFGLEL-DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDV 122

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + WN++++G    G  E+ L+ F  M      P  +T++ +++    + +L+ G+ +   
Sbjct: 123 VLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGF 182

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           ++K+G+ S   V ++ ID++ KC  +ED++ +FE +   D    N + S + + G  +  
Sbjct: 183 AMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGT 242

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA------VVA 384
           L L   ML   I+P   T++ VL +   +  + HG + H   I SG   +       ++ 
Sbjct: 243 LRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK 302

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +++++MYAK GS+  +  +F ++  +D+ SWN ++MG   +G   E L++F  + E  L 
Sbjct: 303 NAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLK 362

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD +T   VL AC++ GFV +G    + MK +Y V P  EHY C+ID+L +AGQL +A +
Sbjct: 363 PDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYE 422

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +  TMP +    +W ++L A  ++    L E  A+R+ +L+      Y L++  Y   GR
Sbjct: 423 LALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGR 482

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           +E ++ V+  MR+  + K  GCSWI +KN ++ F + +  H     IY  L  LT  + +
Sbjct: 483 YEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTARLCE 542

Query: 625 EGCV 628
            G V
Sbjct: 543 HGYV 546



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 193/398 (48%), Gaps = 46/398 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG LFK G     ++G+  ++ Y +FG                              
Sbjct: 76  KKIHGLLFKFGLELDVFIGSALVNCYLKFGL----------------------------- 106

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++ A   F+E+P  DVV WN+M++GYA  G  +  LE F +M  + V PS FT + +L
Sbjct: 107 --MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGIL 164

Query: 155 STVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  +      +G+ IHG  ++ G   S V + NSLIDMYGK   +  A  +F  M E DI
Sbjct: 165 SVFAVMGDLNNGRIIHGFAMKMGYD-SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 223

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWNS+ S     G  +  L     M  +G  PD  T++ V+ AC+ L  L  G+++   
Sbjct: 224 FSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 283

Query: 272 SVKVGF------LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            +  G       + + ++ +A ID+++KC  + D+  +FE++   D A  N+MI  YG +
Sbjct: 284 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMH 343

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA 384
           G+G  ALE+F  M    ++P E T   VLS+      V  G  F +  +KS +D    + 
Sbjct: 344 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQ-MKSKYDVAPTIE 402

Query: 385 --SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
             + +++M  + G +D + E+ + +  + + V W  ++
Sbjct: 403 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 440


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 180/603 (29%), Positives = 309/603 (51%), Gaps = 37/603 (6%)

Query: 31   FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
             +  K IHG + + G +    +GN  +++Y + G+                         
Sbjct: 951  LELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGS------------------------- 985

Query: 91   LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                  +  A  VF ++ E D++SWN+MISG    G  + ++ MF  +    + P  FT 
Sbjct: 986  ------VSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTV 1039

Query: 151  SILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + +L   SS   G     QIH   +++G+ L + V   +LID+Y K G +  A  +F+N 
Sbjct: 1040 ASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV-STALIDVYSKRGKMEEAEFLFVNQ 1098

Query: 207  EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +  D+ SWN+++ G   SG    AL  +  M+ SG   D+ T+     A   L  L +GK
Sbjct: 1099 DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGK 1158

Query: 267  QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            Q+ A+ VK GF  +  V S  +D++ KC  +E + R+F ++   D      MIS     G
Sbjct: 1159 QIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENG 1218

Query: 327  FGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVAS 385
              E AL  +  M    ++P E+T + ++ +  +   +E G Q H+  +K     +  V +
Sbjct: 1219 QEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMT 1278

Query: 386  SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            SL++MYAK G+I+ +  +F + + R + SWN +++GL Q+G A E L  F+ +   G+ P
Sbjct: 1279 SLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMP 1338

Query: 446  DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            DR+T   VL AC++ G V +    F +M++ YG+ P  EHY+C++D L +AG++ +A  +
Sbjct: 1339 DRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKV 1398

Query: 506  TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             S+MPF+   S++ ++L A  +  D +  + VAE+++ L+      Y LL+  YA   +W
Sbjct: 1399 ISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQW 1458

Query: 566  EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            E +   + +MRK  + K  G SW+ +KN+++ F AG+  H     IY  +  +   + +E
Sbjct: 1459 ENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREE 1518

Query: 626  GCV 628
            G V
Sbjct: 1519 GYV 1521



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 244/495 (49%), Gaps = 49/495 (9%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            CL   S   ++++HG+  K+G     ++    +++Y++FG   +   LFD +  ++ + W
Sbjct: 770  CLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLW 829

Query: 85   NICLRGLLKSDNLDTALKVFDEI------PE----------------------------- 109
            N+ ++  + +     A+ +F E       P+                             
Sbjct: 830  NVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK 889

Query: 110  --------PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-A 160
                     DV+ WN  +S +   G +  A++ F  M    V   G TF ++L+ V+   
Sbjct: 890  LFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLN 949

Query: 161  CH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
            C   GKQIHG ++RSGL    V +GN LI+MY K G +  A  VF  M E+D+ISWN++I
Sbjct: 950  CLELGKQIHGIVMRSGLD-QVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMI 1008

Query: 219  SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR-NLDKGKQVFALSVKVGF 277
            SGC  SG  E ++  F  +      PD++T++ V+ AC+ L        Q+ A ++K G 
Sbjct: 1009 SGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGV 1068

Query: 278  LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
            + +S V +A ID++SK  ++E++  LF   D +D A  N ++  Y   G    AL L+ L
Sbjct: 1069 VLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYIL 1128

Query: 338  MLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            M     R  + TL +   ++  +  ++ G Q H++ +K GF+ +  V S +++MY K G 
Sbjct: 1129 MQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGE 1188

Query: 397  IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            ++S+  +F ++   D V+W T++ G  +NG+    L  + ++    + PD  T A ++ A
Sbjct: 1189 MESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKA 1248

Query: 457  CNYGGFVDKGMLVFS 471
            C+    +++G  + +
Sbjct: 1249 CSLLTALEQGRQIHA 1263



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/498 (22%), Positives = 215/498 (43%), Gaps = 70/498 (14%)

Query: 14   SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
            SL  C  ++ + ++       K  H  +   G +   ++ N  + +Y++ G+     +LF
Sbjct: 655  SLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLF 714

Query: 74   DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS-CGYSDYAL 132
            D  P  N                              D+V+WN+++S  A+    S    
Sbjct: 715  DTTPDTN-----------------------------RDLVTWNAILSALAAHADKSHDGF 745

Query: 133  EMFSKMQLQGVRPSGFTFS-----ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
             +F  ++   V  +  T +      LLS   SA   + +HG  ++ GL   +V +  +L+
Sbjct: 746  HLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSA--SESLHGYAVKIGLQW-DVFVAGALV 802

Query: 188  DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            ++Y K G++  A  +F  M   D++ WN ++    ++     A+  F     +G+ PD+ 
Sbjct: 803  NIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDV 862

Query: 248  TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            T+  +       +N+ + KQ  A + K+    +                           
Sbjct: 863  TLRTLSRVVKCKKNILELKQFKAYATKLFMYDD--------------------------- 895

Query: 308  DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
            D  D  V N  +S + + G    A++ F  M+   +     T   +L+ +  +  +E G 
Sbjct: 896  DGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGK 955

Query: 367  QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
            Q H + ++SG D    V + L+ MY K GS+  +  +F ++++ DL+SWNT++ G T +G
Sbjct: 956  QIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSG 1015

Query: 427  RAAETLDVFEELLEEGLPPDRITLAAVLLACNY--GGFVDKGMLVFSAMKEEYGVMPGEE 484
                ++ +F  LL + L PD+ T+A+VL AC+   GG+     +   AMK   GV+    
Sbjct: 1016 LEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKA--GVVLDSF 1073

Query: 485  HYACIIDLLCQAGQLGKA 502
                +ID+  + G++ +A
Sbjct: 1074 VSTALIDVYSKRGKMEEA 1091



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 5/147 (3%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + L+  C    + +  + IH ++ KL      ++    +D+Y++ G  +D   LF     
Sbjct: 1243 ATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1302

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
            +   SWN  + GL +  N   AL+ F  +      PD V++  ++S  +  G    A E 
Sbjct: 1303 RRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYEN 1362

Query: 135  FSKMQLQ-GVRPSGFTFSILLSTVSSA 160
            F  MQ   G+ P    +S L+  +S A
Sbjct: 1363 FYSMQKNYGIEPEIEHYSCLVDALSRA 1389


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  308 bits (789), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 314/612 (51%), Gaps = 36/612 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C         K IHG L K GF+         LDL++  G  +    ++ +  Q N
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFS---------LDLFAMTGLEN----MYAKCRQVN 187

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A KVFD +PE D+VSWN++++GY+  G +  ALEM   M  
Sbjct: 188 ------------------EARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + ++PS  T   +L  VS+      GK+IHG  +RSG   S V +  +L+DMY K G L 
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD-SLVNISTALVDMYAKCGSLE 288

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M E +++SWNS+I     +   + A+  F  M   G  P + ++   ++AC 
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +L++G+ +  LSV++G   N  V+++ I ++ KC  ++ +  +F +L        N 
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSG 376
           MI  + + G    AL  F  M    ++P  FT   V+++I    + H +++ H + ++S 
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D N  V ++L++MYAK G+I  +  IF  + +R + +WN ++ G   +G     L++FE
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE 528

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+ +  + P+ +T  +V+ AC++ G V+ G+  F  MKE Y +    +HY  ++DLL +A
Sbjct: 529 EMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRA 588

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L +A D    MP +P  +++ ++L A  I+ +V   E  AER+ +L       + LL 
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLA 648

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             Y     WE + +V+  M + G+ K  GCS + IKN +++F +G   H   +KIY  L 
Sbjct: 649 NIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLE 708

Query: 617 LLTWEMEDEGCV 628
            L   +++ G V
Sbjct: 709 KLICHIKEAGYV 720



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 217/440 (49%), Gaps = 39/440 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L++RC S K     + I   +FK G     +   + + L+ R+G+ D+  ++F+ I  K 
Sbjct: 43  LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + ++  L+G  K  +LD                                AL+ F +M+ 
Sbjct: 100 NVLYHTMLKGFAKVSDLDK-------------------------------ALQFFVRMRY 128

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V P  + F+ LL           GK+IHG +++SG SL ++     L +MY K   + 
Sbjct: 129 DDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL-DLFAMTGLENMYAKCRQVN 187

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M E D++SWN++++G   +G   +AL+   SM      P   TI  V+ A +
Sbjct: 188 EARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVS 247

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            LR +  GK++   +++ GF S   + +A +D+++KC  LE + +LF+ +   +    N 
Sbjct: 248 ALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 307

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MI  Y +    + A+ +FQ ML E ++PT+ ++   L +   +  +E G   H ++++ G
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG 367

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D N  V +SL+ MY K   +D++  +F KL  R LVSWN +++G  QNGR  + L+ F 
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query: 437 ELLEEGLPPDRITLAAVLLA 456
           ++    + PD  T  +V+ A
Sbjct: 428 QMRSRTVKPDTFTYVSVITA 447



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 190/360 (52%), Gaps = 7/360 (1%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           ++LL   SS    +QI   + ++GL   +      L+ ++ + G +  A  VF  ++   
Sbjct: 41  ALLLERCSSLKELRQILPLVFKNGLYQEHF-FQTKLVSLFCRYGSVDEAARVFEPIDSKL 99

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            + +++++ G       + AL  F  MRY    P  Y  + ++  C     L  GK++  
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L VK GF  +   ++   ++++KC ++ ++ ++F+++   D    N +++ Y + G   +
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ALE+ + M  E+++P+  T+  VL ++  +  +  G + H  A++SGFDS   ++++L++
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK GS++++ ++F  + +R++VSWN+++    QN    E + +F+++L+EG+ P  ++
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           +   L AC   G +++G  +   +  E G+         +I + C+     K +D  ++M
Sbjct: 340 VMGALHACADLGDLERGRFIHK-LSVELGLDRNVSVVNSLISMYCKC----KEVDTAASM 394



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 143/300 (47%), Gaps = 8/300 (2%)

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E+  ++++  C+ L+ L   +Q+  L  K G        +  + LF +   ++++ R+FE
Sbjct: 37  EHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFE 93

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            +D     + + M+  + +    + AL+ F  M  +D+ P  +  + +L        +  
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G + H + +KSGF  +    + L  MYAK   ++ + ++F ++ +RDLVSWNTI+ G +Q
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGE 483
           NG A   L++ + + EE L P  IT+ +VL A +    +  G  +   AM+  +  +   
Sbjct: 214 NGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI 273

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
                ++D+  + G L  A  +   M  +     W S++ A     + K    + ++M+D
Sbjct: 274 S--TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  308 bits (789), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/524 (31%), Positives = 295/524 (56%), Gaps = 5/524 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  NL  A K+FD +P+ D V+WN +I+GY   G++D A+ +F  M   GV+    TF+ 
Sbjct: 325 KCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFAS 384

Query: 153 LLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L +V    S  + K++H  ++R G+   +V L ++L+D+Y K G +  A   F     +
Sbjct: 385 FLPSVLKSGSLKYCKEVHSYIVRHGVPF-DVYLKSALVDIYFKGGDVEMACKTFQQNTLV 443

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+    ++ISG   +G    AL+ F  +   G  P+  T++ V+ AC  L +L  GK++ 
Sbjct: 444 DVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELH 503

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G  +   V S+   +++K  RL+ + + F ++   D    N+MI ++ + G  E
Sbjct: 504 CDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPE 563

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           +A++LF+ M     +    +LS  LS+    P + +G + H   +++ F S+  VAS+L+
Sbjct: 564 LAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLI 623

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G +  +  +F  +D ++ VSWN+I+     +GR  E LD+F E++E G+ PD +
Sbjct: 624 DMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHV 683

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   ++ AC + G VD+G+  F  M EEYG+    EH+AC++DL  +AG+L +A D   +
Sbjct: 684 TFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKS 743

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF P    W S+L A  ++G+V+L +  ++ +++L   +   Y LL+  +A  G WE++
Sbjct: 744 MPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESV 803

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           ++V+ +M++ G+ K+ G SWI +    + F+A +  H    +IY
Sbjct: 804 LKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEIY 847



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 252/528 (47%), Gaps = 40/528 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C    +    K +H     +GF+   ++G+  + LY+  G   D            
Sbjct: 183 VIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHD------------ 230

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A  +FDE+P  D + WN M++GY   G  + AL  F +M+ 
Sbjct: 231 -------------------AKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRN 271

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V+P+  +F  LLS  ++      G Q+HG +IRSG   S+  + N++I MY K G L+
Sbjct: 272 SCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFE-SDPTVANTIITMYSKCGNLF 330

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M + D ++WN LI+G   +G+ + A+  F +M  SG   D  T +  + +  
Sbjct: 331 DARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVL 390

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           K  +L   K+V +  V+ G   +  + SA +D++ K   +E + + F+Q    D AV   
Sbjct: 391 KSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTA 450

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           MIS Y   G    AL LF+ +++E + P   T++ VL +   +  ++ G + H   +K G
Sbjct: 451 MISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKG 510

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            ++   V SS+  MYAK+G +D + + F ++  +D V WN +++  +QNG+    +D+F 
Sbjct: 511 LENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFR 570

Query: 437 ELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           ++   G   D ++L+A L AC NY        L    ++  +  +      + +ID+  +
Sbjct: 571 QMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSF--ISDTFVASTLIDMYSK 628

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            G+L  A  +   M ++   S W SI+ A   +G  +   ++   M++
Sbjct: 629 CGKLALARSVFDMMDWKNEVS-WNSIIAAYGNHGRPRECLDLFHEMVE 675



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 201/431 (46%), Gaps = 44/431 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IH  +   G N    LG+R L +Y    +  DV  LF                     
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLF--------------------- 134

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                 L++   +P      WN +I G++  G  D+AL  F +M    V P  +TF  ++
Sbjct: 135 ----CRLQLCYSLP------WNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVI 184

Query: 155 STVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
                AC G       K +H  + RS     ++ +G+SLI +Y   G ++ A  +F  + 
Sbjct: 185 K----ACGGLNNVPLCKMVH-ELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELP 239

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D I WN +++G   +G    AL  F  MR S   P+  +   +++ C     +  G Q
Sbjct: 240 VRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQ 299

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +  L ++ GF S+  V +  I ++SKC  L D+ ++F+ + + D    N +I+ Y + GF
Sbjct: 300 LHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGF 359

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            + A+ LF+ M+   ++    T +  L S+     +++  + HS  ++ G   +  + S+
Sbjct: 360 TDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSA 419

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+++Y K G ++ + + F +    D+     ++ G   NG   E L++F  L++EG+ P+
Sbjct: 420 LVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPN 479

Query: 447 RITLAAVLLAC 457
            +T+A+VL AC
Sbjct: 480 CLTMASVLPAC 490



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 44/290 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  S    K +H  + K G      +G+    +Y++ G  D   Q F  +P 
Sbjct: 484 ASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPV 543

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ + WN+                               MI  ++  G  + A+++F +M
Sbjct: 544 KDSVCWNL-------------------------------MIVSFSQNGKPELAIDLFRQM 572

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
              G +      S+ LS   SAC       +GK++H  ++R+   +S+  + ++LIDMY 
Sbjct: 573 GTSGTKFD----SVSLSATLSACANYPALYYGKELHCFVVRNSF-ISDTFVASTLIDMYS 627

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  A  VF  M+  + +SWNS+I+   N G     LD F+ M  +G  PD  T  +
Sbjct: 628 KCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLV 687

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           +++AC     +D+G   F  ++ + G  +     +  +DL+ +  RL ++
Sbjct: 688 IMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEA 737



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 3/258 (1%)

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +Q+ A  +  G   +  + S  + ++  C   +D   LF +L        N +I  +   
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G  + AL  F  ML  ++ P ++T   V+ +   +  V      H +A   GF  +  + 
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           SSL+++Y   G I  +  +F +L  RD + WN ++ G  +NG     L  F+E+    + 
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ ++   +L  C   G V  G+ +   +    G          II +  + G L  A  
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRS-GFESDPTVANTIITMYSKCGNLFDARK 334

Query: 505 ITSTMPFQPGCSIWESIL 522
           I   MP Q     W  ++
Sbjct: 335 IFDIMP-QTDTVTWNGLI 351


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 307/569 (53%), Gaps = 8/569 (1%)

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           IP+   +     ++       +  A  +FDE+PE DVV+W  MI+GY SC    +A  +F
Sbjct: 38  IPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVF 97

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +M  + + P+ FT S +L          +G+ +HG  I+ GL    + + N+L+DMY  
Sbjct: 98  CEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLD-GFIYVDNALMDMYAT 156

Query: 193 LGV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
             V +  A  VF  +   + +SW +LI+G  +   G   L  F  M       + ++ SI
Sbjct: 157 CCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSI 216

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            + ACT + +   G+Q+ A   K GF SN  V+++ +D++ +C+   ++ R F ++++ D
Sbjct: 217 AVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRD 276

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               N +I+ Y R    E +L +F +M  E   P  FT + ++++   +  +  G Q H 
Sbjct: 277 LITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHG 335

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             I+ G D N  ++++L++MY+K G+I  S ++F  + +RDLVSW  +M+G   +G   E
Sbjct: 336 RIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEE 395

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            +++F++++  G+ PDR+   A+L AC++ G VD+G+  F  M  +Y + P +E Y C++
Sbjct: 396 AVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVV 455

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG++ +A ++  +MPF+P   +W   L A   +    L +  A R++DL+     
Sbjct: 456 DLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAG 515

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y +L+  YA  G+W    R++K+M++ G  K TG SW+ + N +Y+F  G+      + 
Sbjct: 516 TYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEG 575

Query: 611 IYLVLRLLTWEMEDEGCVY-LECDKLDVE 638
           IY VL  L   M++ G V  L+C   D+E
Sbjct: 576 IYQVLENLIGHMKESGYVPDLDCLIYDLE 604



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 190/408 (46%), Gaps = 40/408 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS-DDVLQLFDEIP 77
           S ++  C   K   + + +HG   K G +   Y+ N  +D+Y+    S DD   +F  I 
Sbjct: 113 SSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIH 172

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            KN +SW   + G    D+                        GY         L +F +
Sbjct: 173 LKNEVSWTTLIAGYTHRDD------------------------GYG-------GLRVFRQ 201

Query: 138 MQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M L+ V  + F+FSI +   +++ S   G+Q+H ++ + G   SN+ + NS++DMY +  
Sbjct: 202 MLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFE-SNLPVMNSILDMYCRCS 260

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               A   F  M + D+I+WN+LI+G   S   E +L  F  M   G+SP+ +T + ++ 
Sbjct: 261 CFSEANRYFYEMNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMA 319

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  L+ G+Q+    ++ G   N  + +A ID++SKC  + DS ++F  + R D   
Sbjct: 320 ACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVS 379

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAI 373
              M+  YG +G+GE A+ELF  M+R  IRP       +LS+      V+ G ++  + +
Sbjct: 380 WTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMV 439

Query: 374 KS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                  +  +   ++++  + G ++ + E+   +  K D   W   +
Sbjct: 440 GDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFL 487



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 40/307 (13%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L++  +N  S S     +  C S  S  F + +H  + K GF ++  + N  LD+Y R  
Sbjct: 204 LEEVELNPFSFSIA---VRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCS 260

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              +  + F E+ Q++ I+WN  + G  +S+  ++                         
Sbjct: 261 CFSEANRYFYEMNQRDLITWNTLIAGYERSNPTES------------------------- 295

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
                  L +FS M+ +G  P+ FTF+ +++  ++      G+QIHG +IR GL   N+ 
Sbjct: 296 -------LYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD-GNLA 347

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L N+LIDMY K G +  +  VF  M   D++SW +++ G    GYGE A++ F  M  SG
Sbjct: 348 LSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSG 407

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDS 300
             PD      +++AC+    +D+G + F L V    +S +  +    +DL  +  ++E++
Sbjct: 408 IRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEA 467

Query: 301 VRLFEQL 307
             L E +
Sbjct: 468 YELIESM 474


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 186/531 (35%), Positives = 288/531 (54%), Gaps = 54/531 (10%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVFD +PE + VSW +MISGYAS   +  AL +F  M+ +    + F F+ +LS ++ 
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTL 221

Query: 160 ---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                +GKQIH   +++GL LS V +GN+L+ MY K G L  A   F    + + I+W++
Sbjct: 222 PELVNNGKQIHCIAVKNGL-LSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSA 280

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G   SG  + AL  F SM  SG  P E+T   VINAC+ L    +GKQV    +K+G
Sbjct: 281 MITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG 340

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F S   V++A +D+++KC+ + D+ + F+ L   D  +   MI  Y + G  E AL L+ 
Sbjct: 341 FESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYG 400

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M  E I P E T++ VL +   +  +E G Q H+  +K GF     + S+L  MYAK G
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCG 460

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +   T +F ++  RD++SWN ++ GL+QNG   E L++FEE+  EG  PD +T   +L 
Sbjct: 461 CLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILS 520

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G V++G   F  M +E+G+ P  EHYAC++D+L +AG+L +AI+ T +     G 
Sbjct: 521 ACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHG- 579

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            +WE          DV+                                     RV+++M
Sbjct: 580 -MWE----------DVE-------------------------------------RVRRMM 591

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +  G++K  GCSWI +K+ ++ F   +  H     I++ LR L+ +M+DEG
Sbjct: 592 KLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKDEG 642



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 181/373 (48%), Gaps = 37/373 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    K G  +   +GN  + +Y++ G+ DD LQ F+    KN I+W+  + G  +S
Sbjct: 229 KQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQS 288

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            + D ALK                               +FS M L G+RPS FTF  ++
Sbjct: 289 GDSDKALK-------------------------------LFSSMHLSGIRPSEFTFVGVI 317

Query: 155 STVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S   +A  GKQ+H  +++ G   S + +  +L+DMY K   +  A   F  ++E DI
Sbjct: 318 NACSDLGAAWEGKQVHDYLLKLGFE-SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + W S+I G   +G  E AL  +  M   G  P+E T++ V+ AC+ L  L++GKQ+ A 
Sbjct: 377 VLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHAR 436

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK GF     + SA   +++KC  L+D   +F ++   D    N MIS   + G G+ A
Sbjct: 437 TVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEA 496

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKSGFDSNAVVASSLME 389
           LELF+ M  E  +P   T   +LS+   +  VE G   F  M  + G D      + +++
Sbjct: 497 LELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVD 556

Query: 390 MYAKTGSIDSSTE 402
           + ++ G +  + E
Sbjct: 557 ILSRAGKLKEAIE 569



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 157/299 (52%), Gaps = 5/299 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK +H  +I+S  S S V + NSL+++Y K   L  A  VF  ++  D++SWN +I+G  
Sbjct: 25  GKALHAQIIKS--SSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYS 82

Query: 223 NSGY--GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             G       ++ F  MR    +P+ +T + V  A + L +   G+   A+++K+    +
Sbjct: 83  QHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRD 142

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V S+ ++++ K     ++ ++F+ +   +      MIS Y        AL LF+LM R
Sbjct: 143 VFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRR 202

Query: 341 EDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E+    EF  + VLS++ +P  V +G Q H +A+K+G  S   V ++L+ MYAK GS+D 
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDD 262

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           + + F     ++ ++W+ ++ G  Q+G + + L +F  +   G+ P   T   V+ AC+
Sbjct: 263 ALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 36/289 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C    +    K +H +L KLGF +  Y+    +D+Y+                   
Sbjct: 316 VINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYA------------------- 356

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K  ++  A K FD + EPD+V W SMI GY   G ++ AL ++ +M++
Sbjct: 357 ------------KCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEM 404

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G+ P+  T + +L   SS      GKQIH   ++ G  L  V +G++L  MY K G L 
Sbjct: 405 EGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGL-EVPIGSALSTMYAKCGCLK 463

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               VF  M   D+ISWN++ISG   +G G+ AL+ F  M+  G  PD  T   +++AC+
Sbjct: 464 DGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACS 523

Query: 258 KLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            +  +++G   F +   + G        +  +D+ S+  +L++++   E
Sbjct: 524 HMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           ++ G   H+  IKS   S   +A+SL+ +YAK   +  +  +F ++  +D+VSWN I+ G
Sbjct: 22  LQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIING 80

Query: 422 LTQNGRAAET--LDVFEELLEEGLPPDRITLAAVLLACNY-----GGFVDKGMLVFSAMK 474
            +Q+G +  +  +++F+ +  E   P+  T A V  A +      GG +   + +   M 
Sbjct: 81  YSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAI--KMD 138

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
               V  G    + ++++ C+AG   +A  +  TMP +   S W +++   A
Sbjct: 139 SCRDVFVG----SSLMNMYCKAGLTPEARKVFDTMPERNSVS-WATMISGYA 185



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +  K IH    K GF     +G+    +Y++ G   D   +F  +P 
Sbjct: 415 ASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA 474

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ ISWN  + GL ++     AL++F+E+     +PD V++ +++S  +  G  +     
Sbjct: 475 RDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGY 534

Query: 135 FSKM 138
           F  M
Sbjct: 535 FRMM 538


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 170/549 (30%), Positives = 294/549 (53%), Gaps = 10/549 (1%)

Query: 99   TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
             A K F   PE D++SWN+MIS YA       A+  F  +   G++P  FT + +L   S
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 159  SACHGK------QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +   G+      Q+H   I+ G+ +++  +  +LID+Y K G +  A  +     + D+ 
Sbjct: 1007 TGDEGEYFTLGSQVHVYAIKCGI-INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA 1065

Query: 213  SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            SWN+++ G   S     AL+ F  M   G   DE T++  I A   L NL +GKQ+ A +
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            +K+GF ++  V S  +D++ KC  + +++ LF ++ R D      MIS Y   G  + AL
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHAL 1185

Query: 333  ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
             ++ LM    ++P E+T + ++ +S  +  +E G Q H+  +K  +  +  V +SL++MY
Sbjct: 1186 SVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMY 1245

Query: 392  AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
             K GS+  +  +F K+D R +V WN +++GL Q+G   E L++F  +   G+ PD++T  
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFI 1305

Query: 452  AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
             VL AC++ G   +    F AM + YG+ P  EHY+C++D L +AG++ +A ++ ++MPF
Sbjct: 1306 GVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPF 1365

Query: 512  QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
            +   S++ ++L A    GD +  + VA++++ L       Y LL+  YA   +W+ +   
Sbjct: 1366 KASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDA 1425

Query: 572  KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
            + +M+   + K  G SWI +KN+++ F   +  H     IY  +  L   + +EG    +
Sbjct: 1426 RNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPD 1485

Query: 632  CD--KLDVE 638
             D   LDVE
Sbjct: 1486 TDFTLLDVE 1494



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 193/428 (45%), Gaps = 60/428 (14%)

Query: 34   AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            ++T+HG+  K+GF    ++    +++Y ++G                             
Sbjct: 736  SETVHGYAVKIGFELDLFVSGALVNIYCKYGL---------------------------- 767

Query: 94   SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
               +  A  +FD++PE D V WN M+  Y    + D AL  FS     G  P       +
Sbjct: 768  ---VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCV 824

Query: 154  LSTVSS-ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +  V+S   + ++ H   +++                        YA  +F   +  +I 
Sbjct: 825  IGGVNSDVSNNRKRHAEQVKA------------------------YAMKMFPFDQGSNIF 860

Query: 213  SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            +WN  ++   ++G    A+D F ++  S    D  T+ I+++A     +LD G+Q+ AL 
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            +K  F     V ++ ++++SK   +  + + F      D    N MIS+Y +      A+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 333  ELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLM 388
              F+ +LR+ ++P +FTL+ VL +            GSQ H  AIK G  +++ V+++L+
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 389  EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            ++Y+K G +D +  +       DL SWN IM G  ++ ++ + L+ F  + E G+P D I
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 449  TLAAVLLA 456
            TLA  + A
Sbjct: 1101 TLATAIKA 1108



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 198/426 (46%), Gaps = 47/426 (11%)

Query: 93   KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY--ALEMFSKMQLQGVRPSGFTF 150
            K  +L +A +VFD+  + D+V+WNS+++ YA    S Y   LE F    L  +R  GF+ 
Sbjct: 658  KCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL--LREFGFSI 715

Query: 151  SILLSTVSSACH--------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
            + L                  + +HG  ++ G  L   V G +L+++Y K G++  A  +
Sbjct: 716  TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSG-ALVNIYCKYGLVGQARLL 774

Query: 203  FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
            F  M E D + WN ++     + + + AL  F +   SG+ PD   +  VI       ++
Sbjct: 775  FDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNS--DV 832

Query: 263  DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
               ++  A  VK          +  + +F      +    +F     W     N  ++ +
Sbjct: 833  SNNRKRHAEQVK----------AYAMKMFP----FDQGSNIFA----W-----NKKLTEF 869

Query: 323  GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNA 381
               G    A++ F+ +LR  I     TL  +LS+ +    ++ G Q H++ IKS F    
Sbjct: 870  LHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVV 929

Query: 382  VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
             V++SLM MY+K G + ++ + F+   + DL+SWNT++    QN    E +  F +LL +
Sbjct: 930  PVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRD 989

Query: 442  GLPPDRITLAAVLLACNYGGFVDKG-MLVFSAMKEEY----GVMPGEEHYACIIDLLCQA 496
            GL PD+ TLA+VL AC+ G   D+G      +    Y    G++        +IDL  + 
Sbjct: 990  GLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKG 1046

Query: 497  GQLGKA 502
            G++ +A
Sbjct: 1047 GKMDEA 1052



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 36/270 (13%)

Query: 35   KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
            K I  +  KLGFN   ++ +  LD+Y                               +K 
Sbjct: 1119 KQIQAYAIKLGFNNDLWVSSGVLDMY-------------------------------IKC 1147

Query: 95   DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++  AL++F EI  PD V+W +MISGY   G  D+AL ++  M++ GV+P  +TF+ L+
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 155  ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
               S +++   GKQIH ++++   SL + V G SL+DMY K G +  A+ VF  M+   +
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFV-GTSLVDMYCKCGSVQDAYRVFRKMDVRKV 1266

Query: 212  ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            + WN+++ G    G+ + AL+ F +M+ +G  PD+ T   V++AC+      +  + F  
Sbjct: 1267 VFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDA 1326

Query: 272  SVKVGFLSNSIV-LSATIDLFSKCNRLEDS 300
              K   ++  I   S  +D   +  R++++
Sbjct: 1327 MFKTYGITPEIEHYSCLVDALGRAGRIQEA 1356



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG-- 220
           GK+ H  ++ SG  L +  L N+LI MY K G L  A  VF    + D+++WNS+++   
Sbjct: 630 GKRAHARIVTSG-DLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYA 688

Query: 221 CFNSGYGELALDQFYS---MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
            F     E  L+ F     +R  G+S    T++ ++  C     +   + V   +VK+GF
Sbjct: 689 QFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +  V  A ++++ K   +  +  LF+++   D  + NVM+  Y    F + AL  F  
Sbjct: 749 ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             R    P    L CV+  +    V +  + H+  +K          +  M+M+      
Sbjct: 809 FHRSGFXPDFSNLHCVIGGVN-SDVSNNRKRHAEQVK----------AYAMKMFP----F 853

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D  + IF         +WN  +      G+    +D F+ LL   +  D +TL  +L A 
Sbjct: 854 DQGSNIF---------AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           + +L  GK+  A  V  G L +  + +  I ++SKC  L  + ++F++    D    N +
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 319 ISTYGRYGFG--EVALELFQL--MLRE-DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
           ++ Y ++     E  LE F+L  +LRE     T  TL+ +L    +   V+     H  A
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K GF+ +  V+ +L+ +Y K G +  +  +F K+ +RD V WN ++    +N    E L
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 433 DVFEELLEEGLPPDRITLAAVLLACN 458
             F      G  PD   L  V+   N
Sbjct: 804 RFFSAFHRSGFXPDFSNLHCVIGGVN 829



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 7/141 (4%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            CL+  + +  K IH ++ KL ++   ++G   +D+Y + G+  D  ++F ++  +  + W
Sbjct: 1212 CLT--ALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 85   NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKM-Q 139
            N  L GL +  ++D AL +F  +     +PD V++  ++S  +  G    A + F  M +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 140  LQGVRPSGFTFSILLSTVSSA 160
              G+ P    +S L+  +  A
Sbjct: 1330 TYGITPEIEHYSCLVDALGRA 1350


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 294/547 (53%), Gaps = 6/547 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ L+   +   LD A  +F+EI + D V++N++I+GY   G    A+ +F KM+  G +
Sbjct: 182 NVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHK 241

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           PS FTFS +L  V        G+Q+HG  + +G S  +  +GN ++  Y K   +     
Sbjct: 242 PSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFS-RDASVGNQILHFYSKHDRVLETRN 300

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M ELD +S+N +IS    +   E +L+ F  M+  G+    +  + +++    L +
Sbjct: 301 LFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSS 360

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G+QV   ++     S   V ++ +D+++KC   +++  +F+ L +        +IS 
Sbjct: 361 LQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISG 420

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSN 380
           Y + G     L+LF  M   ++R  + T + VL +S     +  G Q H+  I+SG   N
Sbjct: 421 YVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLEN 480

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
               S L++MYAK GSI  + ++F ++  R+ VSWN ++     NG     +  F ++++
Sbjct: 481 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQ 540

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            GL PD +++  VL+AC++ GFV++G   F AM   YG+ P ++HYAC++DLL + G+  
Sbjct: 541 SGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 600

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAY 559
           +A  +   MPF+P   +W S+L A  IY +  L E  AE++  ++ L     Y  ++  Y
Sbjct: 601 EAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIY 660

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G+WE +  VKK MR+ GI KV   SW+ + ++I+ F++ +  H  G +I   +  LT
Sbjct: 661 AAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELT 720

Query: 620 WEMEDEG 626
            E+E EG
Sbjct: 721 TEIEREG 727



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 243/506 (48%), Gaps = 17/506 (3%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +   + K GFN  T   N  ++   R G     L+++DE+P KN +S N  + G +K 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            +L +A  +FD +P+  VV+W  ++  YA   + D A ++F +M      P   TF+ LL
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 155 STVSSACHGK---QIHGSMIRSGLSLSNVVLG--NSLIDMYGKLGVLYYAFGVFLNMEEL 209
              + A       Q+H   ++ G   +N+ L   N L+  Y ++  L  A  +F  + + 
Sbjct: 149 PGCNDAVPQNAVGQVHAFAVKLGFD-TNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDK 207

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +++N+LI+G    G    A+  F  MR SG+ P ++T S V+ A   L +   G+Q+ 
Sbjct: 208 DSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLH 267

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            LSV  GF  ++ V +  +  +SK +R+ ++  LF ++   D+   NV+IS+Y +    E
Sbjct: 268 GLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYE 327

Query: 330 VALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            +L LF+ M         F  + +LS +  +  ++ G Q H  AI +  DS   V +SL+
Sbjct: 328 ESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLV 387

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK    D +  IF  L +R  VSW  ++ G  Q G     L +F ++    L  D+ 
Sbjct: 388 DMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQS 447

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY----ACIIDLLCQAGQLGKAID 504
           T A VL A    GF     L+       + +  G        + ++D+  + G +  A+ 
Sbjct: 448 TFATVLKAS--AGFAS---LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQ 502

Query: 505 ITSTMPFQPGCSIWESILRASAIYGD 530
           +   MP +   S W +++ A A  GD
Sbjct: 503 VFEEMPDRNAVS-WNALISAYADNGD 527



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 202/433 (46%), Gaps = 46/433 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++   +    F   + +HG     GF+    +GN+ L  YS+     +   LF+E+P+
Sbjct: 248 SGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPE 307

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + +S+N+                               +IS Y+     + +L +F +M
Sbjct: 308 LDFVSYNV-------------------------------VISSYSQAEQYEESLNLFREM 336

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIH-GSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           Q  G     F F+ +LS    +SS   G+Q+H  +++ +  S+ +V  GNSL+DMY K  
Sbjct: 337 QCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHV--GNSLVDMYAKCE 394

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +   A  +F ++ +   +SW +LISG    G     L  F  MR +    D+ T + V+ 
Sbjct: 395 MFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLK 454

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A     +L  GKQ+ A  ++ G L N    S  +D+++KC  ++D+V++FE++   +   
Sbjct: 455 ASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS 514

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQ-FHSMA 372
            N +IS Y   G GE A+  F  M++  ++P   + L  +++      VE G++ F +M+
Sbjct: 515 WNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMS 574

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG--LTQNG--- 426
              G        + ++++  + G    + ++  ++  + D + W++++    + +N    
Sbjct: 575 PIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLA 634

Query: 427 -RAAETLDVFEEL 438
            RAAE L   E+L
Sbjct: 635 ERAAEQLFSMEKL 647



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 42/266 (15%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           +A  S  + ++     F S    K +H  + + G   + + G+  +D+Y++ G+  D +Q
Sbjct: 443 RADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQ 502

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGY 127
           +F+E+P +N +SWN  +     + + + A+  F ++     +PD VS   ++   + CG+
Sbjct: 503 VFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGF 562

Query: 128 SDYALEMFSKMQ-LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            +   E F  M  + G+ P    +         AC                        +
Sbjct: 563 VEQGTEFFQAMSPIYGITPKKKHY---------AC------------------------M 589

Query: 187 IDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGY 242
           +D+ G+ G    A  +   M  E D I W+S+++ C    N    E A +Q +SM     
Sbjct: 590 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRD 649

Query: 243 SPDEYTISIVINACTKLRNLDKGKQV 268
           +    ++S +  A  K  N+   K+ 
Sbjct: 650 AAAYVSMSNIYAAAGKWENVRHVKKA 675


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 305/599 (50%), Gaps = 70/599 (11%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  L   S+ G  DD  +LFD +P ++  SWN  +     S  L+ A K+F E P    +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSM 170
           +W+S+ISGY   G    ALE+F +MQ +G RP+ FT+  +L   S       GKQIH   
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-LNMEELDIISWNSLISGCFNSGYGEL 229
           I++    SN  +   L+DMY K   +  A  +F L  ++ + + W ++++G   +G G  
Sbjct: 165 IKTQFD-SNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHK 223

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A++ F  MR  G   +++T   ++ AC  +     G QV    V+ GF +N  V SA +D
Sbjct: 224 AIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVD 283

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++SKC  L ++ R+ E ++  D    N MI    R G GE AL LF++M    ++  EFT
Sbjct: 284 MYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFT 343

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
                                          ++V ++L++MYAK G  D + ++F K+  
Sbjct: 344 YP-----------------------------SLVNNALVDMYAKRGYFDYAFDVFEKMTD 374

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG--------- 460
           +D++SW +++ G   NG   E L +F E+   G+ PD+I +AAVL A +           
Sbjct: 375 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCG 434

Query: 461 -------------------------GFVD--KGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
                                    G+    +G   F +M+E YG+ PG EHYAC+IDLL
Sbjct: 435 CIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLL 494

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            ++G+L +A ++ + M  QP  ++W+++L A  ++G+V+L E  A  + +L+  + +PY 
Sbjct: 495 GRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYV 554

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           LL+  Y+  G+WE   + +++M+  G++K  GCSWI + ++++ F + +  H    +IY
Sbjct: 555 LLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIY 613



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 68/257 (26%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  +  F   +HG + + GF A+ ++G+  +D+YS+ G   +  ++ + +   +
Sbjct: 246 ILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDD 305

Query: 81  CISWNI----CLRGLLKSDNL------------------------------------DTA 100
            +SWN     C+R  L  + L                                    D A
Sbjct: 306 PVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYA 365

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
             VF+++ + DV+SW S+++G    G  + AL +F +M++ G+ P     + +LS     
Sbjct: 366 FDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA---- 421

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
                                L NSL+ MY K G +  A  VF +ME  D+I+W +LI G
Sbjct: 422 ---------------------LDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVG 460

Query: 221 CFNSGYGELALDQFYSM 237
              +G G    D F SM
Sbjct: 461 YAQNGRGR---DYFQSM 474


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 172/536 (32%), Positives = 295/536 (55%), Gaps = 5/536 (0%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  AL VF  +  P V++W S+I  +        AL  F +M+  G  P    F  +L +
Sbjct: 55  LHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKS 114

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +       G+ +HG ++R G+   ++  GN+L++MY KL  +     VF  M   D++S
Sbjct: 115 CTMMMDLRFGESVHGFIVRLGMD-CDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVS 173

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           +N++I+G   SG  E AL     M  S   PD +T+S V+   ++  ++ KGK++    +
Sbjct: 174 YNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVI 233

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + G  S+  + S+ +D+++K  R+EDS R+F  L R D    N +++ Y + G    AL 
Sbjct: 234 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALR 293

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF+ M+   +RP     S V+ +       H G Q H   ++ GF  N  +AS+L++MY+
Sbjct: 294 LFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYS 353

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G+I ++ +IF +++  D VSW  I+MG   +G   E + +FEE+  +G+ P+++   A
Sbjct: 354 KCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVA 413

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G VD+    F++M + YG+    EHYA + DLL +AG+L +A D  S M  +
Sbjct: 414 VLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVE 473

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P  S+W ++L + +++ +++L E VAE++  +   +   Y L+   YA  GRW+ + +++
Sbjct: 474 PTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLR 533

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             +RK G+ K   CSWI +KN+ + F +G+  H    +I   L+ +  +ME EG V
Sbjct: 534 LRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYV 589



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 213/444 (47%), Gaps = 42/444 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C       F +++HG + +LG +   Y GN  +++YS+    D V ++F+ +P+K+
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKD 170

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+N                               ++I+GYA  G  + AL M  +M  
Sbjct: 171 VVSYN-------------------------------TVIAGYAQSGMYEDALRMVREMGT 199

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             ++P  FT S +L   S       GK+IHG +IR G+  S+V +G+SL+DMY K   + 
Sbjct: 200 SDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGID-SDVYIGSSLVDMYAKSARIE 258

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  VF ++   D ISWNSL++G   +G    AL  F  M  +   P     S VI AC 
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  L  GKQ+    ++ GF  N  + SA +D++SKC  ++ + ++F++++  D      
Sbjct: 319 HLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTA 378

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKS 375
           +I  +  +G G  A+ LF+ M R+ ++P +     VL++     +  E    F+SM    
Sbjct: 379 IIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY 438

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDV 434
           G +      +++ ++  + G ++ + +   K+      S W+T++   + +    + L++
Sbjct: 439 GLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH----KNLEL 494

Query: 435 FEELLEEGLPPDRITLAAVLLACN 458
            E++ E+    D   + A +L CN
Sbjct: 495 AEKVAEKIFTIDSENMGAYVLMCN 518



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 189/395 (47%), Gaps = 43/395 (10%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + + S    KQ+H   IR+  SLS+    + +I +Y  L +L+ A  VF  +E   +++W
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQ-SLSHTS-ASIVISIYTNLKLLHEALLVFKTLESPPVLAW 73

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S+I    +      AL  F  MR SG  PD      V+ +CT + +L  G+ V    V+
Sbjct: 74  KSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR 133

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G   +    +A ++++SK   ++   ++FE + R D    N +I+ Y + G  E AL +
Sbjct: 134 LGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRM 193

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            + M   D++P  FTLS VL   PI      V  G + H   I+ G DS+  + SSL++M
Sbjct: 194 VREMGTSDLKPDAFTLSSVL---PIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK+  I+ S  +F  L +RD +SWN+++ G  QNGR  E L +F +++   + P  +  
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310

Query: 451 AAVLLACNY----------------GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           ++V+ AC +                GGF   G  +F A              + ++D+  
Sbjct: 311 SSVIPACAHLATLHLGKQLHGYVLRGGF---GRNIFIA--------------SALVDMYS 353

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           + G +  A  I   M      S W +I+   A++G
Sbjct: 354 KCGNIQAARKIFDRMNLHDEVS-WTAIIMGHALHG 387



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 38/228 (16%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           A V   ++++ S +I  C    +    K +HG++ + GF  + ++ +  +D+YS+ G   
Sbjct: 301 AKVRPGAVAF-SSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQ 359

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              ++FD                          + + DE      VSW ++I G+A  G+
Sbjct: 360 AARKIFDR-------------------------MNLHDE------VSWTAIIMGHALHGH 388

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG---SMIRS-GLSLSNVVLG 183
              A+ +F +M+ QGV+P+   F  +L+  S      +  G   SM +  GL+   +   
Sbjct: 389 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN-QELEHY 447

Query: 184 NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
            ++ D+ G+ G L  A+     M  E     W++L+S C      ELA
Sbjct: 448 AAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 184/612 (30%), Positives = 314/612 (51%), Gaps = 36/612 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C         K IHG L K GF+         LDL++  G  +             
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFS---------LDLFAMTGLEN------------- 178

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K   +  A KVFD +PE D+VSWN++++GY+  G +  ALEM + M  
Sbjct: 179 ---------MYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCE 229

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + ++PS  T   +L  VS+      GK+IHG  +R+G   S V +  +L+DMY K G L 
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFD-SLVNIATALVDMYAKCGSLK 288

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M E +++SWNS+I     +   + A+  F  M   G  P + ++   ++AC 
Sbjct: 289 TARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +L++G+ +  LSV++    N  V+++ I ++ KC  ++ +  +F +L        N 
Sbjct: 349 DLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA 408

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSG 376
           MI  + + G    AL  F  M    ++P  FT   V+++I    + H +++ H + +++ 
Sbjct: 409 MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC 468

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D N  V ++L++MYAK G+I  +  IF  + +R + +WN ++ G   +G     L++FE
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFE 528

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+ +  + P+ +T  +V+ AC++ G V+ G+  F  MKE Y + P  +HY  ++DLL +A
Sbjct: 529 EMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRA 588

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L +A D    MP +P  +++ ++L A  I+ +V   E VAER+ +L       + LL 
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLA 648

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             Y     WE + +V+  M + G+ K  GCS + IKN +++F +G   H   +KIY  L 
Sbjct: 649 NIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLE 708

Query: 617 LLTWEMEDEGCV 628
            L  ++++ G V
Sbjct: 709 KLICQIKEAGYV 720



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 172/320 (53%), Gaps = 2/320 (0%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           ++LL   SS    + I   + ++GL   ++     L+ ++ + G +  A  VF  +++  
Sbjct: 41  ALLLERCSSLKELRHILPLIFKNGLYQEHL-FQTKLVSLFCRYGSVDEAARVFEPIDKKL 99

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            + + +++ G       + AL  F  MR     P  Y  + ++  C     L  GK++  
Sbjct: 100 NVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L VK GF  +   ++   ++++KC ++ ++ ++F+++   D    N +++ Y + G   +
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ALE+  LM  E+++P+  T+  VL ++  +  +  G + H  A+++GFDS   +A++L++
Sbjct: 220 ALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK GS+ ++  +F  + +R++VSWN+++    QN    E + +F+++L+EG+ P  ++
Sbjct: 280 MYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVS 339

Query: 450 LAAVLLACNYGGFVDKGMLV 469
           +   L AC   G +++G  +
Sbjct: 340 VMGALHACADLGDLERGRFI 359



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 141/300 (47%), Gaps = 8/300 (2%)

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E+  ++++  C+ L+ L   + +  L  K G     +  +  + LF +   ++++ R+FE
Sbjct: 37  EHPAALLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFE 93

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEH 364
            +D+    +   M+  + +    + AL+ F  M  +++ P  +  + +L        +  
Sbjct: 94  PIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRV 153

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G + H + +KSGF  +    + L  MYAK   +  + ++F ++ +RDLVSWNTI+ G +Q
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGE 483
           NG A   L++   + EE L P  IT+ +VL A +    +  G  +   AM+  +  +   
Sbjct: 214 NGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNI 273

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
                ++D+  + G L  A  +   M  +     W S++ A     + K    + ++M+D
Sbjct: 274 A--TALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLD 330


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 170/549 (30%), Positives = 294/549 (53%), Gaps = 10/549 (1%)

Query: 99   TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
             A K F   PE D++SWN+MIS YA       A+  F  +   G++P  FT + +L   S
Sbjct: 947  AAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006

Query: 159  SACHGK------QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +   G+      Q+H   I+ G+ +++  +  +LID+Y K G +  A  +     + D+ 
Sbjct: 1007 TGDEGEYFTLGSQVHVYAIKCGI-INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA 1065

Query: 213  SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            SWN+++ G   S     AL+ F  M   G   DE T++  I A   L NL +GKQ+ A +
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            +K+GF ++  V S  +D++ KC  + +++ LF ++ R D      MIS Y   G  + AL
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHAL 1185

Query: 333  ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
             ++ LM    ++P E+T + ++ +S  +  +E G Q H+  +K  +  +  V +SL++MY
Sbjct: 1186 SVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMY 1245

Query: 392  AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
             K GS+  +  +F K+D R +V WN +++GL Q+G   E L++F  +   G+ PD++T  
Sbjct: 1246 CKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFI 1305

Query: 452  AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
             VL AC++ G   +    F AM + YG+ P  EHY+C++D L +AG++ +A ++ ++MPF
Sbjct: 1306 GVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPF 1365

Query: 512  QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
            +   S++ ++L A    GD +  + VA++++ L       Y LL+  YA   +W+ +   
Sbjct: 1366 KASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDA 1425

Query: 572  KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
            + +M+   + K  G SWI +KN+++ F   +  H     IY  +  L   + +EG    +
Sbjct: 1426 RNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPD 1485

Query: 632  CD--KLDVE 638
             D   LDVE
Sbjct: 1486 TDFTLLDVE 1494



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 193/428 (45%), Gaps = 60/428 (14%)

Query: 34   AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            ++T+HG+  K+GF    ++    +++Y ++G                             
Sbjct: 736  SETVHGYAVKIGFELDLFVSGALVNIYCKYGL---------------------------- 767

Query: 94   SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
               +  A  +FD++PE D V WN M+  Y    + D AL  FS     G  P       +
Sbjct: 768  ---VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCV 824

Query: 154  LSTVSS-ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +  V+S   + ++ H   +++                        YA  +F   +  +I 
Sbjct: 825  IGGVNSDVSNNRKRHAEQVKA------------------------YAMKMFPFDQGSNIF 860

Query: 213  SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            +WN  ++   ++G    A+D F ++  S    D  T+ I+++A     +LD G+Q+ AL 
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            +K  F     V ++ ++++SK   +  + + F      D    N MIS+Y +      A+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 333  ELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLM 388
              F+ +LR+ ++P +FTL+ VL +            GSQ H  AIK G  +++ V+++L+
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 389  EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            ++Y+K G +D +  +       DL SWN IM G  ++ ++ + L+ F  + E G+P D I
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 449  TLAAVLLA 456
            TLA  + A
Sbjct: 1101 TLATAIKA 1108



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 198/426 (46%), Gaps = 47/426 (11%)

Query: 93   KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY--ALEMFSKMQLQGVRPSGFTF 150
            K  +L +A +VFD+  + D+V+WNS+++ YA    S Y   LE F    L  +R  GF+ 
Sbjct: 658  KCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL--LREFGFSI 715

Query: 151  SILLSTVSSACH--------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
            + L                  + +HG  ++ G  L   V G +L+++Y K G++  A  +
Sbjct: 716  TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSG-ALVNIYCKYGLVGQARLL 774

Query: 203  FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
            F  M E D + WN ++     + + + AL  F +   SG+ PD   +  VI       ++
Sbjct: 775  FDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNS--DV 832

Query: 263  DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
               ++  A  VK          +  + +F      +    +F     W     N  ++ +
Sbjct: 833  SNNRKRHAEQVK----------AYAMKMFP----FDQGSNIFA----W-----NKKLTEF 869

Query: 323  GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNA 381
               G    A++ F+ +LR  I     TL  +LS+ +    ++ G Q H++ IKS F    
Sbjct: 870  LHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVV 929

Query: 382  VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
             V++SLM MY+K G + ++ + F+   + DL+SWNT++    QN    E +  F +LL +
Sbjct: 930  PVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRD 989

Query: 442  GLPPDRITLAAVLLACNYGGFVDKG-MLVFSAMKEEY----GVMPGEEHYACIIDLLCQA 496
            GL PD+ TLA+VL AC+ G   D+G      +    Y    G++        +IDL  + 
Sbjct: 990  GLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKG 1046

Query: 497  GQLGKA 502
            G++ +A
Sbjct: 1047 GKMDEA 1052



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 36/270 (13%)

Query: 35   KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
            K I  +  KLGFN   ++ +  LD+Y                               +K 
Sbjct: 1119 KQIQAYAIKLGFNNDLWVSSGVLDMY-------------------------------IKC 1147

Query: 95   DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++  AL++F EI  PD V+W +MISGY   G  D+AL ++  M++ GV+P  +TF+ L+
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 155  ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
               S +++   GKQIH ++++   SL + V G SL+DMY K G +  A+ VF  M+   +
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFV-GTSLVDMYCKCGSVQDAYRVFRKMDVRKV 1266

Query: 212  ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            + WN+++ G    G+ + AL+ F +M+ +G  PD+ T   V++AC+      +  + F  
Sbjct: 1267 VFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDA 1326

Query: 272  SVKVGFLSNSIV-LSATIDLFSKCNRLEDS 300
              K   ++  I   S  +D   +  R++++
Sbjct: 1327 MFKTYGITPEIEHYSCLVDALGRAGRIQEA 1356



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           + +L  GK+  A  V  G L +  + +  I ++SKC  L  + ++F++    D    N +
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 319 ISTYGRYGFG--EVALELFQL--MLRE-DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
           ++ Y ++     E  LE F+L  +LRE     T  TL+ +L    +   V+     H  A
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K GF+ +  V+ +L+ +Y K G +  +  +F K+ +RD V WN ++    +N    E L
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 433 DVFEELLEEGLPPDRITLAAVLLACN 458
             F      G  PD   L  V+   N
Sbjct: 804 RFFSAFHRSGFFPDFSNLHCVIGGVN 829



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           S+I +  ++ G + H+  + SG   +  + ++L+ MY+K GS+ S+ ++F K   RDLV+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 415 WNTIMMGLTQNGRAA-----ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           WN+I+    Q   ++     E   +F  L E G    R+TLA +L  C   GFV     V
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 470 FSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
                  Y V  G E        ++++ C+ G +G+A  +   MP +    +W  +L+A
Sbjct: 740 HG-----YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 7/141 (4%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            CL+  + +  K IH ++ KL ++   ++G   +D+Y + G+  D  ++F ++  +  + W
Sbjct: 1212 CLT--ALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 85   NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKM-Q 139
            N  L GL +  ++D AL +F  +     +PD V++  ++S  +  G    A + F  M +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 140  LQGVRPSGFTFSILLSTVSSA 160
              G+ P    +S L+  +  A
Sbjct: 1330 TYGITPEIEHYSCLVDALGRA 1350


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 193/644 (29%), Positives = 327/644 (50%), Gaps = 72/644 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQ 78
           LI+RC+S +     K  HGH+ + G  +  Y  ++   +   S F + +   ++FDEIP+
Sbjct: 36  LIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N  +WN             T ++ +   P+P +  W                L+M S+ 
Sbjct: 93  PNSFAWN-------------TLIRAYASGPDPVLSIW--------------AFLDMVSES 125

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q     P+ +TF  L+   + VSS   G+ +HG  ++S +  S+V + NSLI  Y   G 
Sbjct: 126 Q---CYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVG-SDVFVANSLIHCYFSCGD 181

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  ++E D++SWNS+I+G    G  + AL+ F  M          T+  V++A
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD---- 311
           C K+RNL+ G+QV +   +     N  + +A +D+++KC  +ED+ RLF+ ++  D    
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301

Query: 312 ------YAVI---------------------NVMISTYGRYGFGEVALELF-QLMLREDI 343
                 YA+                      N +IS Y + G    AL +F +L L++++
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +  + TL   LS+   +  +E G   HS   K G   N  V S+L+ MY+K G ++ S E
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  ++KRD+  W+ ++ GL  +G   E +D+F ++ E  + P+ +T   V  AC++ G 
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGL 481

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           VD+   +F  M+  YG++P E+HYACI+D+L ++G L KA+     MP  P  S+W ++L
Sbjct: 482 VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALL 541

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  I+ ++ L E    R+++L+  +   + LL+  YA  G+WE +  ++K MR  G+ K
Sbjct: 542 GACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKK 601

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             GCS I I   I+ F +G+  H   +K+Y  L  +  +++  G
Sbjct: 602 EPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNG 645



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 157/303 (51%), Gaps = 10/303 (3%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           KAS      ++  C   ++ +F + +  ++ +   N +  L N  LD+Y++ G+ +D  +
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 288

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LFD + +K+ ++W   L G   S++ + A +V + +P+ D+V+WN++IS Y   G  + A
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNS 185
           L +F ++QLQ  +        L+ST+S+         G+ IH  + + G+ + N  + ++
Sbjct: 349 LIVFHELQLQ--KNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM-NFHVTSA 405

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI MY K G L  +  VF ++E+ D+  W+++I G    G G  A+D FY M+ +   P+
Sbjct: 406 LIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPN 465

Query: 246 EYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
             T + V  AC+    +D+ + +F  +    G +      +  +D+  +   LE +V+  
Sbjct: 466 GVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFI 525

Query: 305 EQL 307
           E +
Sbjct: 526 EAM 528


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 185/594 (31%), Positives = 309/594 (52%), Gaps = 39/594 (6%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             + +H  + K+G + + + G+  LD+Y++ G  DD                        
Sbjct: 112 LGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDD------------------------ 147

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                     VF  +PE + VSWN++++ Y+  G  D A  + S M+L+GV     T S 
Sbjct: 148 -------GYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSP 200

Query: 153 LLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL+ + +A   K   Q+H  +++ GL L N V  N+ I  Y +   L  A  VF      
Sbjct: 201 LLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVC-NATITAYSECCSLQDAERVFDGAVLC 259

Query: 210 -DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+++WNS++         +LA   F  M+  G+ PD YT + ++ AC+   +   GK +
Sbjct: 260 RDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCL 319

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNR--LEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
             L +K G  ++  V +A I ++ + N   +ED++R+F  +D  D    N +++ Y + G
Sbjct: 320 HGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVG 379

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E AL LF  M    I    +T S V+ S   +  ++ G QFH +A+K GFD+N+ V S
Sbjct: 380 LSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGS 439

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           SL+ MY+K G I+ + + F    K + + WN+I+ G  Q+G+    LD+F  + E  +  
Sbjct: 440 SLIFMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKL 499

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D IT  AVL AC++ G V++G     +M+ ++G+ P +EHYAC IDL  +AG L KA  +
Sbjct: 500 DHITFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATAL 559

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             TMPF+P   + +++L A    GD++L   +A+ +++L+      Y +L++ Y     W
Sbjct: 560 VETMPFEPDAMVLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMW 619

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
                V ++MR+ G+ KV G SWI +KN ++ FNA +  H   ++IY++L+ L 
Sbjct: 620 GEKASVTRMMRERGVKKVPGWSWIEVKNNVHAFNAEDHSHPQCEEIYILLQQLN 673



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 189/376 (50%), Gaps = 14/376 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L++A +VFDE+P  D VSWN++IS +AS G  D   ++   M+         TF  
Sbjct: 40  KCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRSTHAFDSRTFGS 99

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L  V+       G+Q+H  M++ GLS  NV  G++L+DMY K G +   + VF +M E 
Sbjct: 100 ILKGVAYVGKLKLGQQLHSVMLKVGLS-ENVFSGSALLDMYAKCGRVDDGYVVFQSMPER 158

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + +SWN+L++     G  ++A      M   G   D+ T+S ++             Q+ 
Sbjct: 159 NYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLH 218

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGF 327
              VK G    + V +ATI  +S+C  L+D+ R+F+   L R D    N M+  Y  +  
Sbjct: 219 CKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCR-DLVTWNSMLGAYLMHEK 277

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH---GSQFHSMAIKSGFDSNAVVA 384
            ++A ++F  M      P  +T + ++ +  +   EH   G   H + IK G D++  V+
Sbjct: 278 EDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQ--EHKTCGKCLHGLVIKRGLDNSVPVS 335

Query: 385 SSLMEMYAKTGS--IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           ++L+ MY +     ++ +  IF  +D +D  +WN+I+ G  Q G + + L +F ++    
Sbjct: 336 NALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLV 395

Query: 443 LPPDRITLAAVLLACN 458
           +  D  T +AV+ +C+
Sbjct: 396 IEIDHYTFSAVIRSCS 411



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 3/294 (1%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H   I+ G S+++    N+LI  Y K   L  A  VF  M   D +SWN++IS   +SG 
Sbjct: 16  HCRAIKLG-SIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGD 74

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            +       +MR S ++ D  T   ++     +  L  G+Q+ ++ +KVG   N    SA
Sbjct: 75  LDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSA 134

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D+++KC R++D   +F+ +   +Y   N ++++Y R G  ++A  +   M  E +   
Sbjct: 135 LLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEID 194

Query: 347 EFTLSCVLSSIPIPPVEHGS-QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           + T+S +L+ +        + Q H   +K G +    V ++ +  Y++  S+  +  +F 
Sbjct: 195 DGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFD 254

Query: 406 -KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             +  RDLV+WN+++     + +      VF ++   G  PD  T   ++ AC+
Sbjct: 255 GAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACS 308



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 51/224 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C    +    +  H    K+GF+ ++Y+G+  + +YS+ G  +D  + F+   +
Sbjct: 404 SAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSK 463

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N I W                               NS+I GYA  G  + AL++F  M
Sbjct: 464 DNAIVW-------------------------------NSIIFGYAQHGQGNIALDLFYMM 492

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           + + V+    TF  +L+  S        H  ++  G +    +  +             I
Sbjct: 493 KERKVKLDHITFVAVLTACS--------HNGLVEEGCNFIESMESDFGIPPRQEHYACAI 544

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           D+YG+ G L  A  +   M  E D +   +L+  C   G  ELA
Sbjct: 545 DLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIELA 588



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 2/166 (1%)

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H  AIK G  ++   A++L+  YAK   ++S+ ++F ++  RD VSWN I+     +G  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
             T  +   +       D  T  ++L    Y G +  G  + S M  + G+       + 
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVML-KVGLSENVFSGSA 134

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           ++D+  + G++     +  +MP +   S W +++ + +  GD  + 
Sbjct: 135 LLDMYAKCGRVDDGYVVFQSMPERNYVS-WNTLVASYSRVGDCDMA 179


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 180/544 (33%), Positives = 290/544 (53%), Gaps = 9/544 (1%)

Query: 93   KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
            K   +D A  VF  +P  D VSWNSMISG       + A+  F  M+  G+ PS F+   
Sbjct: 503  KCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVIS 562

Query: 153  LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
             LS+ SS      G+QIHG   + GL L +V + N+L+ +Y +   +     VF  M E 
Sbjct: 563  TLSSCSSLGWLTLGRQIHGEGFKWGLDL-DVSVSNALLTLYAETDSINECQKVFFQMPEY 621

Query: 210  DIISWNSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D +SWNS I          L AL  F  M  +G+ P+  T   ++ A +    L  G Q+
Sbjct: 622  DQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI 681

Query: 269  FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGF 327
             AL +K     ++ + +A +  + KC ++ED   +F ++ +R D    N MIS Y   G 
Sbjct: 682  HALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGI 741

Query: 328  GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
               A++L   M++   +   FT + VLS+   +  +E G + H+ A+++  +S+ VV S+
Sbjct: 742  LHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSA 801

Query: 387  LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
            L++MYAK G ID ++  F  +  R++ SWN+++ G  ++G   + L +F  + + G  PD
Sbjct: 802  LVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPD 861

Query: 447  RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
             +T   VL AC++ G VD+G   F +M E YG+ P  EH++C++DLL +AG + K  D  
Sbjct: 862  HVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFI 921

Query: 507  STMPFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
             TMP  P   IW ++L A   A   + +L +  A+ +++L+  + + Y LL+  +A  G 
Sbjct: 922  KTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGN 981

Query: 565  WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
            WE +V  +  MRK  + K  GCSW+ +K+ ++ F AG+  H   +KIY  L+ L  ++ D
Sbjct: 982  WEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRD 1041

Query: 625  EGCV 628
             G V
Sbjct: 1042 AGYV 1045



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/505 (24%), Positives = 243/505 (48%), Gaps = 36/505 (7%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           K GF    Y+G+  ++ ++R+G  D    +F ++  +N ++ N  + GL +    + A K
Sbjct: 379 KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAK 438

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           VF E+ +   ++  S++   ++          FS ++ +G R                  
Sbjct: 439 VFKEMKDLVEINSESLVVLLST-------FTEFSNLK-EGKRK----------------- 473

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  + RSGL  + + +GN+L++MYGK   +  A  VF  M   D +SWNS+ISG  
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           ++   E A+  F++M+ +G  P  +++   +++C+ L  L  G+Q+     K G   +  
Sbjct: 534 HNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVS 593

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV-ALELFQLMLRE 341
           V +A + L+++ + + +  ++F Q+  +D    N  I    +Y    + AL+ F  M++ 
Sbjct: 594 VSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQA 653

Query: 342 DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
             RP   T   +L+++     +  G Q H++ +K     +  + ++L+  Y K   ++  
Sbjct: 654 GWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDC 713

Query: 401 TEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
             IF ++ ++RD VSWN+++ G   +G   + +D+   +++ G   D  T A VL AC  
Sbjct: 714 EIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACAS 773

Query: 460 GGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
              +++GM V +       E  V+ G    + ++D+  + G++  A      MP +   S
Sbjct: 774 VATLERGMEVHACAVRACLESDVVVG----SALVDMYAKCGKIDYASRFFELMPVRNIYS 829

Query: 517 IWESILRASAIYGDVKLTENVAERM 541
            W S++   A +G  +    +  RM
Sbjct: 830 -WNSMISGYARHGHGQKALKIFTRM 853



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 202/437 (46%), Gaps = 41/437 (9%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S       + IHG  FK G +    + N  L LY+   + ++  ++F ++P+ + 
Sbjct: 564 LSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQ 623

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SWN  +  L K               E  V+                 AL+ F +M   
Sbjct: 624 VSWNSFIGALAKY--------------EASVLQ----------------ALKYFLEMMQA 653

Query: 142 GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G RP+  TF  +L+ VSS      G QIH  +++  ++  N +  N+L+  YGK   +  
Sbjct: 654 GWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAI-ENALLAFYGKCEQMED 712

Query: 199 AFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
              +F  M E  D +SWNS+ISG  +SG    A+D  + M   G   D +T + V++AC 
Sbjct: 713 CEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACA 772

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  L++G +V A +V+    S+ +V SA +D+++KC +++ + R FE +   +    N 
Sbjct: 773 SVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNS 832

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKS 375
           MIS Y R+G G+ AL++F  M +    P   T   VLS+   +  V+ G   F SM    
Sbjct: 833 MISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVY 892

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD--LVSWNTIMMGLTQ-NGRAAETL 432
           G        S ++++  + G +    E F+K    D  ++ W T++    + NGR  E  
Sbjct: 893 GLSPRIEHFSCMVDLLGRAGDV-KKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELG 951

Query: 433 DVFEELLEEGLPPDRIT 449
               ++L E  P + + 
Sbjct: 952 QRAAKMLIELEPQNAVN 968



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 215/486 (44%), Gaps = 59/486 (12%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           ++L+    + + L       DR  +  S   A  +H  L+K GF    +  N  +++Y R
Sbjct: 128 TFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVR 187

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G      +LFDE+PQKN +SW+ CL                              ISGY
Sbjct: 188 IGNLVSARKLFDEMPQKNLVSWS-CL------------------------------ISGY 216

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---------GKQIHGSMIRS 173
                 D A  +F  +   G+ P+ F     + +   AC          G QIH  + + 
Sbjct: 217 TQNRMPDEACSLFKGVISSGLLPNHFA----VGSALRACQQCGSTGIKLGMQIHAFICKL 272

Query: 174 GLSLSNVVLGNSLIDMYGKL-GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
              +S+++L N L+ MY    G +  A  VF  ++  + ++WNS+IS     G    A  
Sbjct: 273 P-CVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFK 331

Query: 233 QFYSMRYSGYS----PDEYTISIVINACTKLRN--LDKGKQVFALSVKVGFLSNSIVLSA 286
            F  M+  G      P+EYT+  ++ A   L +  L   +Q+     K GFL +  V SA
Sbjct: 332 LFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSA 391

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            ++ F++   ++ +  +F+Q+   +   +N ++    R   GE A ++F+ M ++ +   
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEIN 450

Query: 347 EFTLSCVLSSIP-----IPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSS 400
             +L  +LS+             G + H+   +SG  D+   + ++L+ MY K  +ID++
Sbjct: 451 SESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNA 510

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             +F  +  +D VSWN+++ GL  N R  E +  F  +   G+ P   ++ + L +C+  
Sbjct: 511 CSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSL 570

Query: 461 GFVDKG 466
           G++  G
Sbjct: 571 GWLTLG 576



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 131/549 (23%), Positives = 244/549 (44%), Gaps = 71/549 (12%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           L D +P K     N+  RG L+ D  +T +   D  PE     +  +++ Y S  Y+   
Sbjct: 79  LKDRLPTK----INLQRRGSLR-DATNTCVAGCD-FPEMASHLFMRLLNKYNST-YTFLR 131

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
              FS  QLQ +      +     T SS      +H  + ++G +  +V   N+LI++Y 
Sbjct: 132 HYTFSHSQLQQLDSEFDRYK----TSSSLYDANHLHLQLYKTGFT-DDVFFCNTLINIYV 186

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           ++G L  A  +F  M + +++SW+ LISG   +   + A   F  +  SG  P+ + +  
Sbjct: 187 RIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGS 246

Query: 252 VINACTKL--RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN-RLEDSVRLFEQLD 308
            + AC +     +  G Q+ A   K+  +S+ I+ +  + ++S C+  ++D+ R+F+++ 
Sbjct: 247 ALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIK 306

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLRE----DIRPTEFTL------SCVLSSIP 358
             +    N +IS Y R G    A +LF +M  E    ++RP E+TL      +C L+   
Sbjct: 307 FRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCG 366

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +  +E   Q  +   KSGF  +  V S+L+  +A+ G +D +  IF ++  R+ V+ N +
Sbjct: 367 LVLLE---QMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGL 423

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           M+GL +  +  E   VF+E+       D + + +  L      F +     FS +KE  G
Sbjct: 424 MVGLARQHQGEEAAKVFKEM------KDLVEINSESLVVLLSTFTE-----FSNLKE--G 470

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
              G+E +A     L ++G +   I I + +                 +YG     +N  
Sbjct: 471 KRKGQEVHA----YLFRSGLVDARISIGNALV---------------NMYGKCTAIDNAC 511

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG--------INKVTGCS--- 587
                +     + ++ +        R+E  V     M++NG        I+ ++ CS   
Sbjct: 512 SVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLG 571

Query: 588 WIGIKNRIY 596
           W+ +  +I+
Sbjct: 572 WLTLGRQIH 580



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +    +H    +    +   +G+  +D+Y++ G  D   + F+ +P 
Sbjct: 765 ATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPV 824

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +N  SWN  + G  +  +   ALK+F  + +    PD V++  ++S  +  G  D   + 
Sbjct: 825 RNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKH 884

Query: 135 FSKM-QLQGVRPSGFTFSILLSTVSSACHGKQI 166
           F  M ++ G+ P    FS ++  +  A   K+I
Sbjct: 885 FKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKI 917


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 320/613 (52%), Gaps = 36/613 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C    S    + +H  +  +GF    ++G+  +  YS  G   D            
Sbjct: 153 VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD------------ 200

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A  +FD +P  D V WN M++GY   G  D A  +F +M+ 
Sbjct: 201 -------------------ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRR 241

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGN-SLIDMYGKLGVL 196
               P+  TF+ +LS  +S      G Q+HG ++ SGL + + V    +LID+Y K   +
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDV 301

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F     +DI+   ++ISG   +G    AL+ F  +       +  T++ V+ AC
Sbjct: 302 EMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC 361

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             L  L  GK++    +K G   +  V SA +D+++KC RL+ + + F  +   D    N
Sbjct: 362 AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWN 421

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            MI++  + G  E A++LF+ M     +    ++S  LS+   +P + +G + H+  ++ 
Sbjct: 422 SMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG 481

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
            F S+    S+L++MY+K G++D +  +F  +++++ VSWN+I+     +GR  ++L++F
Sbjct: 482 AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLF 541

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             +L +G+ PD +T  A++ AC + G VD+G+  F  M EE G+M   EHYAC++DL  +
Sbjct: 542 HGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGR 601

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L +A  + ++MPF P   +W ++L A  ++G+V+L E  +  + DL   +   Y LL
Sbjct: 602 AGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLL 661

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  +A  G+WE++++++ +M++ G+ KV GCSWI + N  + F A +  H    +IYL+L
Sbjct: 662 SNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLL 721

Query: 616 RLLTWEMEDEGCV 628
           + L  E+  EG V
Sbjct: 722 KNLFLELRKEGYV 734



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 220/440 (50%), Gaps = 21/440 (4%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMI 171
           WN MI G+   G  D+AL  + KM   G  P  +TF  ++     ++S   G+ +H  + 
Sbjct: 115 WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQ 174

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
             G  L +V +G+SLI  Y + G ++ A  +F  M   D + WN +++G   +G  + A 
Sbjct: 175 FMGFEL-DVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNAT 233

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS--ATID 289
             F  MR +  +P+  T + V++ C     ++ G Q+  L V  G   +S V +  A ID
Sbjct: 234 GVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALID 293

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ KC  +E + ++F+Q    D  V   MIS Y   G    ALE+F+ +L+E +R    T
Sbjct: 294 IYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVT 353

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L+ VL +   +  +  G + H   +K+G   +  V S++M+MYAK G +D + + F+ + 
Sbjct: 354 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 413

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC------NYGGF 462
            +D V WN+++   +QNG+  E +D+F ++   G   D ++++A L AC      +YG  
Sbjct: 414 DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKE 473

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           +   M+  +   + +         + +ID+  + G L  A  +  TM  +   S W SI+
Sbjct: 474 IHAFMMRGAFRSDLFA-------ESALIDMYSKCGNLDLACRVFDTMEEKNEVS-WNSII 525

Query: 523 RASAIYGDVKLTENVAERMM 542
            A   +G +K + N+   M+
Sbjct: 526 AAYGNHGRLKDSLNLFHGML 545



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 169/354 (47%), Gaps = 17/354 (4%)

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           S    G+Q H  M+ +G+   N +LG  L+ MY   G    A  +F  +       WN +
Sbjct: 60  SGLSQGRQAHAQMLVNGIGY-NGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWM 118

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I G    G  + AL  ++ M   G  PD+YT   VI AC  L ++  G+ V      +GF
Sbjct: 119 IRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGF 178

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +  V S+ I  +S+   + D+  LF+++   D  + NVM++ Y + G  + A  +F  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 338 MLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASS--LMEMYAKT 394
           M R +  P   T +CVLS       +  GSQ H + + SG + ++ VA++  L+++Y K 
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKC 298

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
             ++ + +IF +    D+V    ++ G   NG     L++F  LL+E +  + +TLA+VL
Sbjct: 299 RDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVL 358

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEH------YACIIDLLCQAGQLGKA 502
            AC        G+   +  KE +G +    H       + I+D+  + G+L  A
Sbjct: 359 PAC-------AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLA 405



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    +    K +HGH+ K G     Y+G+  +D+Y++ G  D   Q F  I  
Sbjct: 355 ASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISD 414

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +                                WNSMI+  +  G  + A+++F +M
Sbjct: 415 KDAV-------------------------------CWNSMITSCSQNGKPEEAIDLFRQM 443

Query: 139 QLQGVRPSGFTFSILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + G +    + S  LS  ++  A H GK+IH  M+R G   S++   ++LIDMY K G 
Sbjct: 444 GMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR-GAFRSDLFAESALIDMYSKCGN 502

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  MEE + +SWNS+I+   N G  + +L+ F+ M   G  PD  T   +I+A
Sbjct: 503 LDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 562

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C     +D+G   F  ++ ++G ++     +  +DLF +  RL ++  +   +
Sbjct: 563 CGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSM 615



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 1/207 (0%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++  CT    L +G+Q  A  +  G   N I+ +  + ++  C    D+  +F QL  W 
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS 370
               N MI  +   G  + AL  +  ML     P ++T   V+ +   +  V  G   H 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
                GF+ +  V SSL++ Y++ G I  +  +F ++  +D V WN ++ G  +NG    
Sbjct: 172 KIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDN 231

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLAC 457
              VF E+      P+ +T A VL  C
Sbjct: 232 ATGVFMEMRRTETNPNSVTFACVLSVC 258


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 185/633 (29%), Positives = 317/633 (50%), Gaps = 47/633 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   KSF   K +H  +          LG + +  Y+  G   +  ++FD + +
Sbjct: 103 SSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEK 162

Query: 79  KNCISWN---------------ICLRGLLKSDNLD-----TALKVFDEIPEPDVVSWNSM 118
           KN   WN               ICL  ++    ++     +A ++FD++ + DV+SWNSM
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSM 222

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLSTVSSACH--GKQIHGSMIRSGL 175
           ISGY S G ++  L ++ +M   G+     T  S+L+   +S     GK +H   I+S  
Sbjct: 223 ISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSF 282

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
               +   N+L+DMY K G L  A  VF  M E +++SW S+I+G    G  + A+    
Sbjct: 283 E-RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQ 341

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M   G   D   I+ +++AC +  +LD GK V          SN  V +A +D+++KC 
Sbjct: 342 QMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCG 401

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            +E +  +F  +   D    N MI                      +++P   T++CVL 
Sbjct: 402 SMEAANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTMACVLP 440

Query: 356 SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +   +  +E G + H   +++G+ S+  VA++L+++Y K G +  +  +F  +  +DLVS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W  ++ G   +G   E +  F E+ + G+ PD ++  ++L AC++ G +++G   F  MK
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
            ++ + P  EHYAC++DLL + G L KA +   T+P  P  +IW ++L     Y D++L 
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
           E VAER+ +L+  +   Y LL   YA   +WE + R+++ + K G+ K  GCSWI IK +
Sbjct: 621 EKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 595 IYTFNAGELQHHGGQK-IYLVLRLLTWEMEDEG 626
           +  F +G    H   K I  +L+ +  +M++EG
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEG 713


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 200/702 (28%), Positives = 347/702 (49%), Gaps = 106/702 (15%)

Query: 4   YLKKAHVNKASLSYCSQL--------------IDRCLSFKSFDFAKTIHGHLFKLGFNAH 49
           ++K+ H+++A    C  L              +  C    S+   + +HG +   GF ++
Sbjct: 124 HIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESN 183

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
            ++ N  + +YSR G+ +D   +FDEI +K                 +D           
Sbjct: 184 VFVCNALVAMYSRCGSLEDASLVFDEITRKG----------------ID----------- 216

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS--SACHG---- 163
            DV+SWNS+++ +        ALE+FS+M +     +    S ++S V+   AC      
Sbjct: 217 -DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKAL 275

Query: 164 ---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
              K+IH   IR+G + ++  + N+LID Y K G +  A  VF  ME  D++SWN++++G
Sbjct: 276 PQIKEIHSYAIRNG-TFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 221 CFNSG-YG----------------------------------ELALDQFYSMRYSGYSPD 245
              SG +G                                  + ALD F  M   G  P+
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLS------------NSIVLSATIDLFSK 293
             TI  +++AC  L  L +G ++ A S+K   LS            + +V +A ID++SK
Sbjct: 395 SVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 294 CNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQLMLRED--IRPTEFT 349
           C   + +  +F+ + R +  V+   VMI  Y +YG    AL++F  M+ +   + P  +T
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYT 514

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV--VASSLMEMYAKTGSIDSSTEIFVK 406
           +SC+L +   +  +  G Q H+   +      +V  VA+ L++MY+K G +D++  +F  
Sbjct: 515 ISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + KR+ VSW ++M G   +GR  E LD+F+++ + G  PD I+   +L AC++ G VD+G
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
           +  F  M+ +Y V+   EHYAC+IDLL + G+L KA      MP +P   IW ++L A  
Sbjct: 635 LNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACR 694

Query: 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586
           ++ +V+L E    ++++++  +   Y+L++  YA   RW+ + R++++M+K+GI K  GC
Sbjct: 695 VHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGC 754

Query: 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           SW+  K    +F  G+  H    +IY +L  L   ++  G V
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYV 796



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 173/384 (45%), Gaps = 41/384 (10%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLS-------------------LSNVVLGNSLIDMY 190
           F+ LL    S    +QIH  +I  GL                    +S   LG  ++  Y
Sbjct: 34  FASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASY 93

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
              G    A  V   +     + WN L+      G+ + A+     M  +G  PD +T+ 
Sbjct: 94  LACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLP 153

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
             + AC +L +   G+ +  L    GF SN  V +A + ++S+C  LED+  +F+++ R 
Sbjct: 154 YALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRK 213

Query: 311 ---DYAVINVMISTYGRYGFGEVALELFQLML----------REDIRPTEFTLSCVLSSI 357
              D    N +++ + +      ALELF  M           R DI      L    S  
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLK 273

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +P ++   + HS AI++G  ++A V ++L++ YAK GS++ + ++F  ++ +D+VSWN 
Sbjct: 274 ALPQIK---EIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNA 330

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G TQ+G      ++FE + +E +P D IT +AV+      G   + +  F  M    
Sbjct: 331 MVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM---- 386

Query: 478 GVMPGEE-HYACIIDLLCQAGQLG 500
            ++ G E +   II LL     LG
Sbjct: 387 -ILDGSEPNSVTIISLLSACASLG 409


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 282/513 (54%), Gaps = 38/513 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   + ++  + +HG + + G++   +  N  +D+YS+ G              
Sbjct: 206 SCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLG-------------- 251

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +++ A  VF++IP  DVVSWN++I+G  + G+   ALE+  +M
Sbjct: 252 -----------------DIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQM 294

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  GV P+ FT S +L   + A     G+QIHG MI++    S+  +   L+DMY K G 
Sbjct: 295 KPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADAD-SDEFVAVGLVDMYAKDGF 353

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD--EYTISIVI 253
           L  A  VF  M   D+I WN+LISGC + G     L  F+ MR  G   D    T++ V+
Sbjct: 354 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVL 413

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            +   L  +   KQV AL+ K+G LS+S V++  ID + KC RL+ ++++FE+    D  
Sbjct: 414 KSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDII 473

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
               M++   +   GE A++LF  MLR+ + P  F LS +L++   +   E G Q H+  
Sbjct: 474 SSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHL 533

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK  F S+    ++L+  YAK GSI+ +   F  L ++ +VSW+ ++ GL Q+G     L
Sbjct: 534 IKRQFTSDVFAGNALVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRAL 593

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           ++F  +L+EG+ P+ ITL +VL ACN+ G VD     F +MKE +G+   EEHYAC+ID+
Sbjct: 594 ELFHRMLDEGVAPNNITLTSVLSACNHAGLVDDAKKYFESMKEAFGIDRTEEHYACMIDI 653

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525
           L +AG+L  A+++ + MPFQ   ++W ++L AS
Sbjct: 654 LGRAGKLKDAMELVNNMPFQANAAVWGALLGAS 686



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 217/422 (51%), Gaps = 11/422 (2%)

Query: 99  TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
            A  VFDEIP+P  VSW+S+++ Y++ G    AL  F  M+ +GV  + +   I+L    
Sbjct: 55  AARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCAP 114

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSL 217
               G Q+H   + + L + +V + N+L+ MYG  G++  A  +F     E + +SWN +
Sbjct: 115 DVRFGAQVHALAVATRL-IQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGM 173

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           IS    +     A+  F  M +SG  P+E+  S V+NACT  R+ + G+QV  + V+ G+
Sbjct: 174 ISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGY 233

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +    +A +D++SK   +E +  +FE++   D    N +I+    +G    ALEL   
Sbjct: 234 DKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQ 293

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M    + P  FTLS VL +         G Q H   IK+  DS+  VA  L++MYAK G 
Sbjct: 294 MKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGF 353

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD--RITLAAVL 454
           +D + ++F  + +RDL+ WN ++ G + +GR  E L +F  + +EGL  D  R TLAAVL
Sbjct: 354 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVL 413

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            +      +     V  A+ E+ G++        +ID   + G+L  AI +     F+  
Sbjct: 414 KSTASLEAICHTKQVH-ALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKV-----FEES 467

Query: 515 CS 516
           CS
Sbjct: 468 CS 469



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 237/458 (51%), Gaps = 18/458 (3%)

Query: 97  LDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +D A ++FDE   E + VSWN MIS Y        A+ +F +M   G RP+ F FS +++
Sbjct: 151 VDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVN 210

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + +     G+Q+HG ++R+G    +V   N+L+DMY KLG +  A  VF  +   D++
Sbjct: 211 ACTGSRDWETGRQVHGMVVRTGYD-KDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVV 269

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN+LI+GC   G+   AL+    M+  G  P+ +T+S V+ AC      + G+Q+    
Sbjct: 270 SWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFM 329

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG-FGEVA 331
           +K    S+  V    +D+++K   L+D+ ++F+ + R D  + N +IS     G  GEV 
Sbjct: 330 IKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEV- 388

Query: 332 LELFQLMLRE--DIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           L LF  M +E  D+     TL+ VL S+  +  + H  Q H++A K G  S++ V + L+
Sbjct: 389 LSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLI 448

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           + Y K G +D + ++F +    D++S  ++M  L+Q     + + +F ++L +GL PD  
Sbjct: 449 DSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSF 508

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAM-KEEY--GVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            L+++L AC      ++G  V + + K ++   V  G      ++    + G +  A   
Sbjct: 509 VLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGN----ALVYTYAKCGSIEDADMA 564

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            S +P + G   W +++   A +G  K    +  RM+D
Sbjct: 565 FSGLP-EKGVVSWSAMIGGLAQHGHGKRALELFHRMLD 601



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 197/415 (47%), Gaps = 12/415 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H  +++SGL  S     N L+  Y +  +   A  VF  + +   +SW+SL++   
Sbjct: 23  GAHLHSHLLKSGLLAS---YSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYS 79

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N+G    AL  F SMR  G   +EY + IV+     +R    G QV AL+V    + +  
Sbjct: 80  NNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCAPDVRF---GAQVHALAVATRLIQDVF 136

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLRE 341
           V +A + ++     ++++ R+F++      AV  N MIS Y +      A+ +F+ M+  
Sbjct: 137 VTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWS 196

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
             RP EF  SCV+++       E G Q H M +++G+D +   A++L++MY+K G I+ +
Sbjct: 197 GERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMA 256

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             +F K+   D+VSWN ++ G   +G     L++  ++   G+ P+  TL++VL AC   
Sbjct: 257 AVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGA 316

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYAC-IIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
           G  + G  +   M +       +E  A  ++D+  + G L  A  +   MP +    +W 
Sbjct: 317 GAFNLGRQIHGFMIKADA--DSDEFVAVGLVDMYAKDGFLDDARKVFDFMP-RRDLILWN 373

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
           +++   +  G      ++  RM    L   +  + L          EAI   K+V
Sbjct: 374 ALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQV 428



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 39/302 (12%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+ +L+    ++    S ++    K +H    K+G  + +++ N  +D Y         
Sbjct: 404 VNRTTLA---AVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSY--------- 451

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                         W        K   LD A+KVF+E    D++S  SM++  + C + +
Sbjct: 452 --------------W--------KCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGE 489

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            A+++F +M  +G+ P  F  S LL   +++S+   GKQ+H  +I+   + S+V  GN+L
Sbjct: 490 DAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFT-SDVFAGNAL 548

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +  Y K G +  A   F  + E  ++SW+++I G    G+G+ AL+ F+ M   G +P+ 
Sbjct: 549 VYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNN 608

Query: 247 YTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            T++ V++AC     +D  K+ F ++    G        +  ID+  +  +L+D++ L  
Sbjct: 609 ITLTSVLSACNHAGLVDDAKKYFESMKEAFGIDRTEEHYACMIDILGRAGKLKDAMELVN 668

Query: 306 QL 307
            +
Sbjct: 669 NM 670


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/590 (30%), Positives = 301/590 (51%), Gaps = 36/590 (6%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++ RCL  K    AK +H  + K     + ++ N  L +Y   G               
Sbjct: 33  EVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECG--------------- 77

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                            L  A  VFD + +    SWN+MI+GY    +++ A+ +F +M 
Sbjct: 78  ----------------RLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMC 121

Query: 140 LQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +GV+P+  T+ I+L   +++S+   GK++H  +   GL  S+V +G +L+ MYGK G +
Sbjct: 122 HEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLE-SDVRVGTALLRMYGKCGSI 180

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F N+   DIISW  +I     SG G+ A      M   G+ P+  T   ++NAC
Sbjct: 181 NEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC 240

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L   K+V   ++  G   +  V +A + +++K   ++D+  +F+++   D    N
Sbjct: 241 ASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWN 300

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
           VMI  +  +G G  A +LF  M  E  +P       +L++      +E   + H  A+ S
Sbjct: 301 VMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS 360

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G + +  V ++L+ MY+K+GSID +  +F ++  R++VSWN ++ GL Q+G   + L+VF
Sbjct: 361 GLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVF 420

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             +   G+ PDR+T  AVL AC++ G VD+G   + AM + YG+ P   H  C++DLL +
Sbjct: 421 RRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGR 480

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L +A      M   P  + W ++L +   YG+V+L E VA+  + L   +   Y LL
Sbjct: 481 AGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLL 540

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
           +  YA  G+W+ +  V+ +MR+ GI K  G SWI + N+I+ F   +  H
Sbjct: 541 SNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSH 590



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 1/222 (0%)

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G   D +    V+  C K ++L   KQV    +K     N+ V++  + ++ +C RL+++
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             +F+ L +   A  N MI+ Y  +   E A+ LF+ M  E ++P   T   +L +   +
Sbjct: 83  RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             ++ G + H+     G +S+  V ++L+ MY K GSI+ +  IF  L   D++SW  ++
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
               Q+G   E   +  ++ +EG  P+ IT  ++L AC   G
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 305/560 (54%), Gaps = 13/560 (2%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           ++      + + A  +FDE+P  DV++W SMI+GY SC +   A  +F+ M   GV+P+ 
Sbjct: 48  IKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNA 107

Query: 148 FTFSILLSTVSSA----CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL-GVLYYAFGV 202
           FT S +L    S     C GK +HG  I+ G   S++ + N+L+DMY      +  A  V
Sbjct: 108 FTVSAVLKACKSLKALLC-GKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLV 166

Query: 203 FLNMEELDIISWNSLISGCFN--SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
           F ++   + +SW +LI+G  +    +G L + +   M     SP  ++ SI ++AC  + 
Sbjct: 167 FEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSP--FSFSIAVSACASIG 224

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           + + GKQV A  +  GF SN  V++A +D++ +C    ++ +LF ++ + D    N +I+
Sbjct: 225 SSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIA 284

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDS 379
            +      E +L +F  M+ E   P  FT + V+++     + + G Q H   I  G D+
Sbjct: 285 GFETLDSYE-SLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDN 343

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N  ++++L++MYAK G++  S +IF  +   +LVSW ++M+G   +G   E +D+F E++
Sbjct: 344 NLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMV 403

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
             G+ PD+I   AVL AC++ G VD+G+  F  M   Y V P  + YAC++DLL +AG++
Sbjct: 404 GSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRV 463

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            +A ++   MPF+P  SIW ++L A   Y    + +  A ++++++      Y LL+   
Sbjct: 464 KEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFS 523

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G W     ++K+MR     K  G SWI +KN++ +F  G++     +++  VL LL 
Sbjct: 524 AAEGNWADFASLRKLMRSTKSKKEVGRSWIELKNQVCSFIVGDIFDSSNKEVCEVLELLI 583

Query: 620 WEMEDEGCVY-LECDKLDVE 638
             M+D G V  L+C   D+E
Sbjct: 584 RHMKDAGYVLDLDCSAHDLE 603



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L   LI  Y   G    A  +F  M   D+I+W S+I+G  +  +   A + F +M   G
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDS 300
             P+ +T+S V+ AC  L+ L  GK V  L++K+G   +SI V +A +D+++ C    D+
Sbjct: 103 VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDN 162

Query: 301 VRL-FEQLDRWDYAVINVMIS--TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            RL FE +   +      +I+  T+ R  FG   L +F+ M  E+   + F+ S  +S+ 
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHRRDAFG--GLRVFRQMFMEEGELSPFSFSIAVSAC 220

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             I     G Q H+  I  GF+SN  V +++++MY +      + ++F ++ ++D ++WN
Sbjct: 221 ASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWN 280

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN-----------YGGFVDK 465
           T++ G  +   + E+L +F +++ EG  P+  T  +V+ AC            +GG + +
Sbjct: 281 TLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHR 339

Query: 466 GM 467
           G+
Sbjct: 340 GL 341



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 167/343 (48%), Gaps = 38/343 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT-YLGNRCLDLYSRFGTS-DDVLQLFDEI 76
           S ++  C S K+    K +HG   K+G    + Y+ N  +D+Y+    S D+   +F++I
Sbjct: 111 SAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDI 170

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
             KN +SW                                ++I+GY     +   L +F 
Sbjct: 171 GTKNAVSW-------------------------------TTLITGYTHRRDAFGGLRVFR 199

Query: 137 KMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M ++    S F+FSI +S   ++ S+  GKQ+H ++I  G   SN+ + N+++DMY + 
Sbjct: 200 QMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFE-SNLPVMNAILDMYCRC 258

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
                A  +F  M + D I+WN+LI+G F +     +L  F  M   G+SP+ +T + VI
Sbjct: 259 RCASEAKQLFGEMTQKDTITWNTLIAG-FETLDSYESLCIFSQMVSEGFSPNCFTFTSVI 317

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  L  L  G+Q+    +  G  +N  + +A ID+++KC  + DS ++F  +   +  
Sbjct: 318 AACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLV 377

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
               M+  YG +G G+ A++LF  M+   I+P +     VLS+
Sbjct: 378 SWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSA 420



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 37/290 (12%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S  S +  K +H  +   GF ++  + N  LD+Y R   + +  QLF E+ QK+ 
Sbjct: 217 VSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDT 276

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           I+WN  + G    D+ ++                                L +FS+M  +
Sbjct: 277 ITWNTLIAGFETLDSYES--------------------------------LCIFSQMVSE 304

Query: 142 GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G  P+ FTF+ +++  ++      G+Q+HG +I  GL  +N+ L N+LIDMY K G +  
Sbjct: 305 GFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLD-NNLELSNALIDMYAKCGNVAD 363

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +  +F  M   +++SW S++ G    G+G+ A+D F  M  SG  PD+     V++AC+ 
Sbjct: 364 SHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSH 423

Query: 259 LRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              +D+G + F L         +  + +  +DL S+  R++++  L E +
Sbjct: 424 AGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENM 473



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 53/240 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C +       + +HG +   G + +  L N  +D+Y++ G   D  ++F  +  
Sbjct: 314 TSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRH 373

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N                               +VSW SM+ GY + G+   A+++F++M
Sbjct: 374 TN-------------------------------LVSWTSMMIGYGAHGHGKEAVDLFNEM 402

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGL-------SLSNVVLGNSL----I 187
              G++P    F  +LS  S        H  ++  GL       S  NV     +    +
Sbjct: 403 VGSGIKPDKIVFMAVLSACS--------HAGLVDEGLRYFRLMTSYYNVAPDRDIYACVV 454

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           D+  + G +  A+ +  NM  + D   W +L+  C    Y + ++ +  +++     P++
Sbjct: 455 DLLSRAGRVKEAYELIENMPFKPDESIWVALLGAC--KKYKQPSIQKLAALKVLEMKPNK 512


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 316/607 (52%), Gaps = 40/607 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C   K+     ++H  + K G  +  ++ N  L++Y++ G +            
Sbjct: 7   SSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTT----------- 55

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VFDE+ E ++VSW++MISGY   G    A++++S+M
Sbjct: 56  --------------------FARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM 95

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L    P+ + F+ ++S   ++S+   G++IH   ++ G   S   + NSLI MY K   
Sbjct: 96  FLV---PNEYVFASVISACASLSAVTLGQKIHSRSLKFGYE-SISFVSNSLISMYMKCNQ 151

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF N  E + +S+N+LI+G   +   E  L+ F  MR  G  PD +    V+  
Sbjct: 152 CSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGI 211

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT   NL +G ++   +VK+   S   + +  I ++S+ N ++++ + F  ++  D    
Sbjct: 212 CTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISW 271

Query: 316 NVMISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
           N +I+           L +F+ M  E ++RP +FT +  L++   +  + HG Q H+  +
Sbjct: 272 NTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLM 331

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++    +  V ++L+ MYAK G I  + +IF K+   +LVSWNTI+ G   +G     ++
Sbjct: 332 RTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVE 391

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +FE++   G+ PD +T   +L ACN+ G VDKG L F++M+E YG+ P  EH++C+ID+L
Sbjct: 392 LFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDML 451

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG+L +A +     PF     +  S+L AS ++GDV + E +A+ ++ LQ  +  PY 
Sbjct: 452 GRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYV 511

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL+  YA  G W+++   +K ++ +G+ K  G S I +   +  F  G+  H   ++I  
Sbjct: 512 LLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSVEKFTIGDFTHLRIKEIKG 571

Query: 614 VLRLLTW 620
           +L+ L+W
Sbjct: 572 ILKTLSW 578



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T+S +++ C+K + L  G  + A  +K G  S+  + +  +++++KC     + ++F+++
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              +    + MIS Y + G  ++A++L+  M    + P E+  + V+S+   +  V  G 
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQ 121

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + HS ++K G++S + V++SL+ MY K      +  +F    + + VS+N ++ G  +N 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +    L+ F+ + ++GL PDR     VL  C     + +G
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRG 221


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 316/607 (52%), Gaps = 40/607 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C   K+     ++H  + K G  +  ++ N  L++Y++ G +            
Sbjct: 7   SSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTT----------- 55

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VFDE+ E ++VSW++MISGY   G    A++++S+M
Sbjct: 56  --------------------FARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM 95

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L    P+ + F+ ++S   ++S+   G++IH   ++ G   S   + NSLI MY K   
Sbjct: 96  FLV---PNEYVFASVISACASLSAVTLGQKIHSRSLKFGYE-SISFVSNSLISMYMKCNQ 151

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF N  E + +S+N+LI+G   +   E  L+ F  MR  G  PD +    V+  
Sbjct: 152 CSDALSVFTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGI 211

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT   NL +G ++   +VK+   S   + +  I ++S+ N ++++ + F  ++  D    
Sbjct: 212 CTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISW 271

Query: 316 NVMISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
           N +I+           L +F+ M  E ++RP +FT +  L++   +  + HG Q H+  +
Sbjct: 272 NTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLM 331

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++    +  V ++L+ MYAK G I  + +IF K+   +LVSWNTI+ G   +G     ++
Sbjct: 332 RTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVE 391

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +FE++   G+ PD +T   +L ACN+ G VDKG L F++M+E YG+ P  EH++C+ID+L
Sbjct: 392 LFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDML 451

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG+L +A +     PF     +  S+L AS ++GDV + E +A+ ++ LQ  +  PY 
Sbjct: 452 GRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYV 511

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL+  YA  G W+++   +K ++ +G+ K  G S I +   +  F  G+  H   ++I  
Sbjct: 512 LLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSVEKFTIGDFTHLRIKEIKG 571

Query: 614 VLRLLTW 620
           +L+ L+W
Sbjct: 572 ILKTLSW 578



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T+S +++ C+K + L  G  + A  +K G  S+  + +  +++++KC     + ++F+++
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              +    + MIS Y + G  ++A++L+  M    + P E+  + V+S+   +  V  G 
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQ 121

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + HS ++K G++S + V++SL+ MY K      +  +F    + + VS+N ++ G  +N 
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +    L+ F+ + ++GL PDR     VL  C     + +G
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRG 221


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/548 (30%), Positives = 299/548 (54%), Gaps = 5/548 (0%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L    K   LD A ++F+ +P  D+V+WN MISG    G  D AL +F  M   G R
Sbjct: 281 NTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGAR 340

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   LL  ++       GK++HG +IR+ + + +  L ++L+D+Y K   +  A  
Sbjct: 341 PDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHM-DAFLVSALVDIYFKCRDVRTARN 399

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           ++     +D++  +++ISG   +G  E AL  F  +      P+  T++ V+ AC  +  
Sbjct: 400 LYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISA 459

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G+++    ++  +     V SA +D+++KC RL+ S  +F ++   D    N MIS+
Sbjct: 460 LPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISS 519

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           + + G  + AL+LF+ M  E I+    T+S  LS+   +P + +G + H + IK    ++
Sbjct: 520 FSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKAD 579

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
               S+L++MYAK G+++ +  +F  +  ++ VSWN+I+     +G   E++     + E
Sbjct: 580 IFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQE 639

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           EG  PD +T  A++ AC + G V++G+ +F  M +EY + P  EH+AC++DL  ++G+L 
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLD 699

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           KAI   + MPF+P   IW ++L A  ++ +V+L +  ++ +  L   +   Y L++   A
Sbjct: 700 KAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINA 759

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           + GRW+ + +V+++M+ N I K+ G SW+ + N  + F A +  H   + IY  L+ L  
Sbjct: 760 VAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQ 819

Query: 621 EMEDEGCV 628
           E+ +EG V
Sbjct: 820 ELREEGYV 827



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 149/567 (26%), Positives = 266/567 (46%), Gaps = 49/567 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    + +H      G  +  Y+G+  + +YS  G   D    FD +P + 
Sbjct: 147 VVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR- 205

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                         D V WN M+ GY   G    A+ +F  M++
Sbjct: 206 ------------------------------DCVLWNVMMDGYIKAGDVGGAVRLFRNMRV 235

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T +  LS  ++      G Q+H   ++ GL    V + N+L+ MY K   L 
Sbjct: 236 SGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLE-QEVAVANTLLSMYAKCRCLD 294

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ +F  +   D+++WN +ISGC  +G  + AL  F  M  SG  PD  T+  ++ A T
Sbjct: 295 DAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALT 354

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  L +GK+V    ++     ++ ++SA +D++ KC  +  +  L++     D  + + 
Sbjct: 355 DLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGST 414

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +IS Y   G  E AL++F+ +L + I+P   T++ VL +   I  +  G + H   +++ 
Sbjct: 415 VISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNA 474

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++    V S+LM+MYAK G +D S  IF K+  +D V+WN+++   +QNG   E LD+F 
Sbjct: 475 YEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFR 534

Query: 437 ELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           ++  EG+  + +T+++ L AC      Y G    G+++   +K +          + +ID
Sbjct: 535 QMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFA------ESALID 588

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPL 550
           +  + G +  A+ +   MP +   S W SI+ A   +G VK + +   RM +    P  +
Sbjct: 589 MYAKCGNMELALRVFEFMPDKNEVS-WNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHV 647

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRK 577
            +  L  A A  G  E  +++ + M K
Sbjct: 648 TFLALISACAHAGLVEEGLQLFQCMTK 674



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 186/367 (50%), Gaps = 10/367 (2%)

Query: 100 ALKVFDEIPEPDVVS---WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           A+ VF  +P     S   WN +I G+ + G+   A+  + KM      PS    ++    
Sbjct: 89  AVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVV 148

Query: 157 VSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            S A  G     + +H +   +GL+ S+V +G++LI MY   G+L  A   F  M   D 
Sbjct: 149 KSCAALGAVSLGRLVHRTARATGLA-SDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDC 207

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + WN ++ G   +G    A+  F +MR SG  P+  T++  ++ C    +L  G Q+ +L
Sbjct: 208 VLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSL 267

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK G      V +  + +++KC  L+D+ RLFE L R D    N MIS   + G  + A
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEA 327

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L LF  MLR   RP   TL  +L ++  +  ++ G + H   I++    +A + S+L+++
Sbjct: 328 LGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDI 387

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K   + ++  ++      D+V  +T++ G   NG + + L +F  LLE+ + P+ +T+
Sbjct: 388 YFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTV 447

Query: 451 AAVLLAC 457
           A+VL AC
Sbjct: 448 ASVLPAC 454



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 191/411 (46%), Gaps = 39/411 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +HG++ +   +   +L +  +D+Y                                K 
Sbjct: 363 KEVHGYIIRNCVHMDAFLVSALVDIY-------------------------------FKC 391

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            ++ TA  ++D     DVV  +++ISGY   G S+ AL+MF  +  Q ++P+  T + +L
Sbjct: 392 RDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVL 451

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              +++S+   G++IHG ++R+        + ++L+DMY K G L  +  +F  M   D 
Sbjct: 452 PACASISALPLGQEIHGYVLRNAYE-GKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE 510

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           ++WNS+IS    +G  + ALD F  M   G   +  TIS  ++AC  L  +  GK++  +
Sbjct: 511 VTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGV 570

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K    ++    SA ID+++KC  +E ++R+FE +   +    N +IS YG +G  + +
Sbjct: 571 IIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKES 630

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLME 389
           +     M  E  +P   T   ++S+      VE G Q F  M  +          + +++
Sbjct: 631 VSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVD 690

Query: 390 MYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           +Y+++G +D + +    +  K D   W  ++     + R  E  D+  + L
Sbjct: 691 LYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVH-RNVELADIASQEL 740



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 142/293 (48%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  +    + IHG++ +  +    Y+ +  +D+Y++ G  D    +F ++  
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSL 507

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K                         DE+      +WNSMIS ++  G    AL++F +M
Sbjct: 508 K-------------------------DEV------TWNSMISSFSQNGEPQEALDLFRQM 536

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            ++G++ +  T S  LS  +S     +GK+IHG +I+  +  +++   ++LIDMY K G 
Sbjct: 537 CMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIK-ADIFAESALIDMYAKCGN 595

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M + + +SWNS+IS     G  + ++   + M+  GY PD  T   +I+A
Sbjct: 596 MELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISA 655

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQL 307
           C     +++G Q+F    K   ++  +   +  +DL+S+  RL+ +++    +
Sbjct: 656 CAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADM 708


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 292/545 (53%), Gaps = 8/545 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  K   +  A K+F E  + D VSWN+MI+G+ + G  + ALE    M+  G  
Sbjct: 38  NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFA 97

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
             G++F  +L  V+   +   G+Q+H  M++ G    NV  G++L+DMY K   +  AF 
Sbjct: 98  VDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYE-GNVFAGSALLDMYAKCERVEDAFE 156

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++   + ++WN+LISG    G    A      M   G   D+ T + ++        
Sbjct: 157 VFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDL 216

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE---QLDRWDYAVINVM 318
                QV A  VK G  S++ V +A I  +S+C  +ED+ R+F+   +    D+   N +
Sbjct: 217 HKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSI 276

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
           ++ + + G  E AL+ F+ M  + +    +  S VL S   +  ++ G Q H + +KSGF
Sbjct: 277 LTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGF 336

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           + N  VASSL+ MY+K G I+ + + F    K   ++WN+++ G  Q+GR    LD+F  
Sbjct: 337 EPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFL 396

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           + +  +  D IT  AVL AC++ G V++G     +M+ +YG+ P  EHYAC+IDLL +AG
Sbjct: 397 MKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAG 456

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           +L +A  +   MPF+P   +W+++L A    GD++L   VA  +++L+      Y LL+ 
Sbjct: 457 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSS 516

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            +    RW     +K++M++ G+ KV G SWI +KN + +FNA +  H   ++IYL L  
Sbjct: 517 MFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGE 576

Query: 618 LTWEM 622
           L  E+
Sbjct: 577 LMEEI 581



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 202/438 (46%), Gaps = 44/438 (10%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +  + +H  + K+G+  + + G+  LD+Y++    +D  ++F  I  +N ++WN      
Sbjct: 117 EVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWN------ 170

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                                    ++ISGYA  G    A  +   M+L+GV     TF+
Sbjct: 171 -------------------------ALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFA 205

Query: 152 ILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF---LN 205
            LL+ +      K   Q+H  +++ GL+ S+  + N++I  Y + G +  A  VF   + 
Sbjct: 206 PLLTLLDDPDLHKLTTQVHAKIVKHGLA-SDTTVCNAIITAYSECGSIEDAERVFDGAIE 264

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
             +LD +SWNS+++G   SG  E AL  F +MR      D Y  S V+ +C+ L  L  G
Sbjct: 265 TRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLG 324

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +QV  L +K GF  N  V S+ I ++SKC  +ED+ + F+   +      N +I  Y ++
Sbjct: 325 QQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQH 384

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF-HSMAIKSGFDSNAVV 383
           G G++AL+LF LM    ++    T   VL++   I  VE G  F  SM    G       
Sbjct: 385 GRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEH 444

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
            + ++++  + G +D +  +   +  + D + W T++      G       V   LLE  
Sbjct: 445 YACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLE-- 502

Query: 443 LPPDRITLAAVLLACNYG 460
           L P+      VLL+  +G
Sbjct: 503 LEPEE-HCTYVLLSSMFG 519



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 160/296 (54%), Gaps = 5/296 (1%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H   I+SG + S +   N++I  Y K G +  A  +F    + D +SWN++I+G  N G 
Sbjct: 22  HCLAIKSGTTAS-IYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGN 80

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E AL+   SM+  G++ D Y+   ++     +  ++ G+QV ++ VK+G+  N    SA
Sbjct: 81  FETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSA 140

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D+++KC R+ED+  +F+ ++  +    N +IS Y + G    A  L   M  E +   
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200

Query: 347 EFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF- 404
           + T + +L+ +  P +    +Q H+  +K G  S+  V ++++  Y++ GSI+ +  +F 
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 405 VKLDKRDL--VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             ++ RDL  VSWN+I+ G +Q+G + + L  FE +  + +  D    +AVL +C+
Sbjct: 261 GAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCS 316



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 354 LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           LS      +   S  H +AIKSG  ++   A++++  YAK G I  ++++F +  +RD V
Sbjct: 7   LSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAV 66

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SWNT++ G    G     L+  + +   G   D  +  ++L      G+V+ G  V S M
Sbjct: 67  SWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMM 126

Query: 474 KE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
            +   E  V  G    + ++D+  +  ++  A ++  ++  +   + W +++   A  GD
Sbjct: 127 VKMGYEGNVFAG----SALLDMYAKCERVEDAFEVFKSINIRNSVT-WNALISGYAQVGD 181



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 51/224 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +    + +H  + K GF  + ++ +  + +YS+ G  +D  + FD  P+
Sbjct: 309 SAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPK 368

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+W                               NS+I GYA  G    AL++F  M
Sbjct: 369 DSSIAW-------------------------------NSLIFGYAQHGRGKIALDLFFLM 397

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           + + V+    TF  +L+  S        H  ++  G S    +  +            +I
Sbjct: 398 KDRRVKLDHITFVAVLTACS--------HIGLVEEGWSFLKSMESDYGIPPRMEHYACMI 449

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           D+ G+ G L  A  +   M  E D + W +L+  C   G  ELA
Sbjct: 450 DLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELA 493


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 203/700 (29%), Positives = 337/700 (48%), Gaps = 94/700 (13%)

Query: 18  CSQLIDRCLSFKSFDFA------KTIHGHLFK---LGFNAHTYLGNRCLDLYSRFGTSDD 68
           CS L+ R  + +S   +      + +H  L     L    H +L  R + LY+  G    
Sbjct: 18  CSVLLRRLAASRSLTSSSFLRALRCLHARLLTSALLHAPPHPHLTLRLIHLYTLSGDLPA 77

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP--DVVSWNSMISGYASCG 126
              LF   P    ++    +     +  L  A+  FD +P+   D V  N++IS YA   
Sbjct: 78  AATLFRADPCP--VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARAS 135

Query: 127 YSDYALEMFSKMQLQG-VRPSGFTFSILLSTVS-----SACHGKQIHGSMIRSG----LS 176
           ++  A+ +F  +   G +RP  ++F+ LLS        S  H  Q+  S+++SG    LS
Sbjct: 136 HAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLS 195

Query: 177 LSNVVLG-----------------------------NSLIDMYGKLGVLYYAFGVFLNME 207
           +SN ++                               +++  Y + G +  A  VF   E
Sbjct: 196 VSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVF---E 252

Query: 208 ELDI---ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           E+D+   + WN++ISG  +SG    A + F  M       DE+T + V++AC        
Sbjct: 253 EVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAH 312

Query: 265 GKQVFA--LSVKVGFLSNSI--VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN---- 316
           GK V      ++  F+  +   V +A + L+SKC  +  + R+F+ +   D    N    
Sbjct: 313 GKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILS 372

Query: 317 ---------------------------VMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
                                      VM+S Y   GF E AL+LF  M  ED++P ++T
Sbjct: 373 GYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYT 432

Query: 350 LSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
            +  +S+   +  ++HG Q H   ++ GF+ +    ++L+ MYA+ G++  +  +F+ + 
Sbjct: 433 YAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
             D VSWN ++  L Q+G   E L++F+ ++ EG+ PDRI+   VL ACN+ G VD+G  
Sbjct: 493 NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQ 552

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F +MK ++G++PGE+HY  +IDLL +AG++G+A D+  TMPF+P  SIWE+IL      
Sbjct: 553 YFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTS 612

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           GD++L  + A+++  +       Y LL+  Y+  GRW    RV+K+MR  G+ K  GCSW
Sbjct: 613 GDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSW 672

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           I   N+++ F  G+ +H    K+Y  L ++   M   G V
Sbjct: 673 IEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYV 712



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 213/461 (46%), Gaps = 59/461 (12%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR---FGT 65
           H+   S+ +C+QL  +C   KS              G      + N  + LY +      
Sbjct: 169 HLPNISVRHCAQL--QCSVLKS--------------GAGGVLSVSNALVALYMKCEALEA 212

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
           + D  ++ DE+P K+ ++W   + G ++  ++  A  VF+E+     V WN+MISGY   
Sbjct: 213 TRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHS 272

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIR---SGLSLSN 179
           G    A E+F +M L+ V    FTF+ +LS  ++A    HGK +HG + R   + +  + 
Sbjct: 273 GMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAA 332

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS--------------- 224
           + + N+L+ +Y K G +  A  +F NM+  D++SWN+++SG   S               
Sbjct: 333 LPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 225 ----------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
                           G+ E AL  F  MR     P +YT +  I+AC +L +L  GKQ+
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQL 452

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               V++GF  ++   +A I ++++C  ++++  +F  +   D    N MIS  G++G G
Sbjct: 453 HGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASS 386
             ALELF  M+ E I P   +   VL++      V+ G Q F SM    G        + 
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTR 572

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNG 426
           L+++  + G I  + ++   +      S W  I+ G   +G
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSG 613


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 313/614 (50%), Gaps = 38/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI +C+  KS      I  H  K GF  H  LGN+ +D Y                  
Sbjct: 81  SSLIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLIDAY------------------ 120

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                        LK  ++  A KVFDE+P   +V+WNSMI+ Y   G S  A++++ +M
Sbjct: 121 -------------LKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRM 167

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G+ P  FTFS +    S       G++ HG  +  G+ +SNV +G++L+DMY K G 
Sbjct: 168 VPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGK 227

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  V   +   D++ + +LI G  + G    +L  F +M   G   +EYT+S V+  
Sbjct: 228 MRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVC 287

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L  G+ +  L VK G  S     ++ + ++ +C  ++DS+++F+Q    +    
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTW 347

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             +I    + G  E+AL  F+ MLR  I P  FTLS VL +   +  +E G Q H++ +K
Sbjct: 348 TSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMK 407

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G D +  V ++L++ Y K GS + +  +F  L + D+VS N+++    QNG   E L +
Sbjct: 408 FGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL 467

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  + + GL P+ +T   VL ACN  G +++G  +FS+ +    +   ++HYAC++DLL 
Sbjct: 468 FSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLG 527

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A  + + +       IW ++L A  I+GDV++ + V  R++DL       + L
Sbjct: 528 RAGRLKEAEMLINQVNISD-VVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVL 586

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA  G W  ++ +K  MR+  + K    SW+ ++  I+TF AG+  H   + I   
Sbjct: 587 LSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREK 646

Query: 615 LRLLTWEMEDEGCV 628
           L  L  ++++ G V
Sbjct: 647 LEELIEKVKELGYV 660



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 80/140 (57%), Gaps = 2/140 (1%)

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
           F +  +++ +L + E I+ T+   S +   I I  +   ++  S A+K GF  +  + + 
Sbjct: 58  FSQSNIKIRKLCITETIQSTKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHS--LGNK 115

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++ Y K GS+  + ++F ++  R +V+WN+++    +NGR+ E +D+++ ++ +G+ PD
Sbjct: 116 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 175

Query: 447 RITLAAVLLACNYGGFVDKG 466
             T ++V  A +  G V +G
Sbjct: 176 EFTFSSVFKAFSDLGLVHEG 195


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/534 (32%), Positives = 292/534 (54%), Gaps = 6/534 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTF-SILLSTV 157
           A +VFD +P  D V+WN++++GYA  G ++ A+ M  +MQ + G RP   T  S+L +  
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 158 SSACHG--KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
            +   G  +++H   +R G     V +  +++D+Y K G +  A  VF  M++ + +SWN
Sbjct: 339 DAQALGACREVHAFAVRGGFD-EQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWN 397

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++I G   +G    AL  F  M   G    + ++   ++AC +L  LD+G++V  L V++
Sbjct: 398 AMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRI 457

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G  SN  V++A I ++ KC R + + ++F++L        N MI    + G  E A+ LF
Sbjct: 458 GLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLF 517

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M  E+++P  FTL  ++ ++  I         H  +I+   D +  V ++L++MYAK 
Sbjct: 518 SRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +  +  +F     R +++WN ++ G   +G     +++FEE+   G  P+  T  +VL
Sbjct: 578 GRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVL 637

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G VD+G   FS+MKE+YG+ PG EHY  ++DLL +AG+L +A      MP +PG
Sbjct: 638 SACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPG 697

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
            S++ ++L A  ++ +V+L E  A+R+ +L+    + + LL   YA    W+ + RV+  
Sbjct: 698 ISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTA 757

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           M K G+ K  G S + +KN I+TF +G   H   + IY  L  L  E++  G V
Sbjct: 758 MEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYV 811



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 191/433 (44%), Gaps = 50/433 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   ++    + +H    + GF+    +    LD+Y + G                    
Sbjct: 337 CADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGA------------------- 377

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       +D+A KVFD + + + VSWN+MI GYA  G +  AL +F +M  +GV 
Sbjct: 378 ------------VDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVD 425

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            +  +    L     AC        G+++H  ++R GL  SNV + N+LI MY K     
Sbjct: 426 VTDVSVLAAL----HACGELGFLDEGRRVHELLVRIGLE-SNVNVMNALITMYCKCKRTD 480

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +     +SWN++I GC  +G  E A+  F  M+     PD +T+  +I A  
Sbjct: 481 LAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALA 540

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            + +  + + +   S+++    +  VL+A ID+++KC R+  +  LF           N 
Sbjct: 541 DISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNA 600

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKS 375
           MI  YG +G G+VA+ELF+ M      P E T   VLS+      V+ G + F SM    
Sbjct: 601 MIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDY 660

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAE-- 430
           G +       +++++  + G +  +     K+     +S    M+G   L +N   AE  
Sbjct: 661 GLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEES 720

Query: 431 TLDVFEELLEEGL 443
              +FE   EEG+
Sbjct: 721 AQRIFELEPEEGV 733



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 3/243 (1%)

Query: 230 ALDQFYSMR-YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
           AL  F +M   SG  P   T + ++  C    +L  G+ V A     G    ++  +A  
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTE 347
           ++++KC R  D+ R+F+++   D    N +++ Y R G  E A+ +   M  ED  RP  
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 348 FTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            TL  VL +      +    + H+ A++ GFD    V+++++++Y K G++DS+ ++F  
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDG 387

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +  R+ VSWN ++ G  +NG A E L +F+ ++ EG+    +++ A L AC   GF+D+G
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447

Query: 467 MLV 469
             V
Sbjct: 448 RRV 450


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 293/535 (54%), Gaps = 8/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A +VFD +P  D V+WN++++GYA  G +  A+EM  +MQ + G RP   T   +L   +
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 159 SACHGK---QIHGSMIRSGLS-LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +A       + H   IRSGL  L NV    +++D Y K G +  A  VF  M   + +SW
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNV--ATAILDAYCKCGDIRAARVVFDWMPTKNSVSW 230

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++I G   +G    AL  F  M   G    + ++   + AC +L  LD+G +V  L V+
Sbjct: 231 NAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR 290

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G  SN  V++A I ++SKC R++ +  +F++LDR      N MI    + G  E A+ L
Sbjct: 291 IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRL 350

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M  E+++P  FTL  V+ ++  I         H  +I+   D +  V ++L++MYAK
Sbjct: 351 FTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 410

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G ++ +  +F    +R +++WN ++ G   +G     +++FEE+   G+ P+  T  +V
Sbjct: 411 CGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSV 470

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++ G VD+G   F++MKE+YG+ PG EHY  ++DLL +AG+L +A      MP  P
Sbjct: 471 LSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDP 530

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G S++ ++L A  ++ +V+L E  A+++ +L     + + LL   YA    W+ + RV+ 
Sbjct: 531 GLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRT 590

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            M KNG+ K  G S I +KN I+TF +G   H   ++IY  L  L  E++  G V
Sbjct: 591 AMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYV 645



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 176/361 (48%), Gaps = 11/361 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  ++  A  VFD +P  + VSWN+MI GYA  G S  AL +F++M  +GV  +  +   
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 153 LLSTVSS-AC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L       C   G ++H  ++R GL  SNV + N+LI MY K   +  A  VF  ++  
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLD-SNVSVMNALITMYSKCKRVDLASHVFDELDRR 326

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
             +SWN++I GC  +G  E A+  F  M+     PD +T+  VI A   + +  + + + 
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             S+++    +  VL+A ID+++KC R+  +  LF           N MI  YG +GFG+
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSL 387
            A+ELF+ M    I P E T   VLS+      V+ G + F SM    G +       ++
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAE--TLDVFEELLEEG 442
           +++  + G +D +     K+     +S    M+G   L +N   AE     +FE   +EG
Sbjct: 507 VDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEG 566

Query: 443 L 443
           +
Sbjct: 567 V 567



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 2/242 (0%)

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL  F +M  +G  P   T + ++  C    +L  G+ V A     G  S ++  +A  +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEF 348
           +++KC R  D+ R+F+++   D    N +++ Y R G   +A+E+   M  E+  RP   
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 349 TLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           TL  VL +      +    + H+ AI+SG +    VA+++++ Y K G I ++  +F  +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
             ++ VSWN ++ G  QNG + E L +F  ++EEG+    +++ A L AC   G +D+GM
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 468 LV 469
            V
Sbjct: 283 RV 284



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 43/299 (14%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A+L  C +L   CL     D    +H  L ++G +++  + N  + +YS+    D    +
Sbjct: 267 AALQACGEL--GCL-----DEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FDE+ ++  +SW                               N+MI G A  G S+ A+
Sbjct: 320 FDELDRRTQVSW-------------------------------NAMILGCAQNGCSEDAV 348

Query: 133 EMFSKMQLQGVRPSGFTF-SIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F++MQL+ V+P  FT  S++  L+ +S     + IHG  IR  L     VL  +LIDM
Sbjct: 349 RLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL-TALIDM 407

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  +F +  E  +I+WN++I G  + G+G+ A++ F  M+  G  P+E T 
Sbjct: 408 YAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTF 467

Query: 250 SIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             V++AC+    +D+G++ F ++    G           +DL  +  +L+++    +++
Sbjct: 468 LSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKM 526


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 293/535 (54%), Gaps = 8/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A +VFD +P  D V+WN++++GYA  G +  A+EM  +MQ + G RP   T   +L   +
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 159 SACHGK---QIHGSMIRSGLS-LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +A       + H   IRSGL  L NV    +++D Y K G +  A  VF  M   + +SW
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNV--ATAILDAYCKCGDIRAARVVFDWMPTKNSVSW 230

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++I G   +G    AL  F  M   G    + ++   + AC +L  LD+G +V  L V+
Sbjct: 231 NAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR 290

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G  SN  V++A I ++SKC R++ +  +F++LDR      N MI    + G  E A+ L
Sbjct: 291 IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRL 350

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M  E+++P  FTL  V+ ++  I         H  +I+   D +  V ++L++MYAK
Sbjct: 351 FTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 410

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G ++ +  +F    +R +++WN ++ G   +G     +++FEE+   G+ P+  T  +V
Sbjct: 411 CGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSV 470

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++ G VD+G   F++MKE+YG+ PG EHY  ++DLL +AG+L +A      MP  P
Sbjct: 471 LSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDP 530

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G S++ ++L A  ++ +V+L E  A+++ +L     + + LL   YA    W+ + RV+ 
Sbjct: 531 GLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRT 590

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            M KNG+ K  G S I +KN I+TF +G   H   ++IY  L  L  E++  G V
Sbjct: 591 AMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYV 645



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 176/361 (48%), Gaps = 11/361 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  ++  A  VFD +P  + VSWN+MI GYA  G S  AL +F++M  +GV  +  +   
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 153 LLSTVSS-AC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L       C   G ++H  ++R GL  SNV + N+LI MY K   +  A  VF  ++  
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLD-SNVSVMNALITMYSKCKRVDLASHVFDELDRR 326

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
             +SWN++I GC  +G  E A+  F  M+     PD +T+  VI A   + +  + + + 
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             S+++    +  VL+A ID+++KC R+  +  LF           N MI  YG +GFG+
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSL 387
            A+ELF+ M    I P E T   VLS+      V+ G + F SM    G +       ++
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAE--TLDVFEELLEEG 442
           +++  + G +D +     K+     +S    M+G   L +N   AE     +FE   +EG
Sbjct: 507 VDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEG 566

Query: 443 L 443
           +
Sbjct: 567 V 567



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 2/242 (0%)

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL  F +M  +G  P   T + ++  C    +L  G+ V A     G  S ++  +A  +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEF 348
           +++KC R  D+ R+F+++   D    N +++ Y R G   +A+E+   M  E+  RP   
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 349 TLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           TL  VL +      +    + H+ AI+SG +    VA+++++ Y K G I ++  +F  +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
             ++ VSWN ++ G  QNG + E L +F  ++EEG+    +++ A L AC   G +D+GM
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 468 LV 469
            V
Sbjct: 283 RV 284



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 43/299 (14%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A+L  C +L   CL     D    +H  L ++G +++  + N  + +YS+    D    +
Sbjct: 267 AALQACGEL--GCL-----DEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FDE+ ++  +SW                               N+MI G A  G S+ A+
Sbjct: 320 FDELDRRTQVSW-------------------------------NAMILGCAQNGCSEDAV 348

Query: 133 EMFSKMQLQGVRPSGFTF-SIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F++MQL+ V+P  FT  S++  L+ +S     + IHG  IR  L     VL  +LIDM
Sbjct: 349 RLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL-TALIDM 407

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  +F +  E  +I+WN++I G  + G+G+ A++ F  M+  G  P+E T 
Sbjct: 408 YAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTF 467

Query: 250 SIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             V++AC+    +D+G++ F ++    G           +DL  +  +L+++    +++
Sbjct: 468 LSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKM 526


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 333/639 (52%), Gaps = 57/639 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +K A V   + +Y + L   C+  + F     +   + K G  +   +GN  + +YSR G
Sbjct: 90  MKSAGVVFDAFTYSTAL-SFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSG 148

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +                       RG         A +VFDE+   D++SWNS++SG + 
Sbjct: 149 S----------------------FRG---------ARRVFDEMSFKDMISWNSLLSGLSQ 177

Query: 125 CGYSDY-ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSL 177
            G   + A+ +F  M  +GV     +F+   S +++ CH       +QIHG  I+ G   
Sbjct: 178 EGTFGFEAVVIFRDMMREGVELDHVSFT---SVITTCCHETDLKLARQIHGLCIKRGYE- 233

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           S + +GN L+  Y K GVL     VF  M E +++SW ++IS   +      A+  F +M
Sbjct: 234 SLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDD-----AVSIFLNM 288

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R+ G  P+E T   +INA      + +G ++  L +K GF+S   V ++ I L++K   L
Sbjct: 289 RFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEAL 348

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           ED+ + FE +   +    N MIS + + GF   AL++F L    +  P E+T   VL++I
Sbjct: 349 EDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMF-LSAAAETMPNEYTFGSVLNAI 407

Query: 358 PIP---PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                  V+ G + H+  +K G +S  VV+S+L++MYAK G+ID S ++F ++ +++   
Sbjct: 408 AFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFV 467

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W +I+   + +G     +++F ++++E + PD +T  +VL ACN  G VDKG  +F+ M 
Sbjct: 468 WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMI 527

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           E Y + P  EHY+C++D+L +AG+L +A ++ S +P  PG S+ +S+L +  ++G+VK+ 
Sbjct: 528 EVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMG 587

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN- 593
             VAE  M+++      Y  +   YA +  W+    ++K MRK  ++K  G SWI + + 
Sbjct: 588 AKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDT 647

Query: 594 ----RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
                +  F++G+  H    +IY ++ ++  EM  EG V
Sbjct: 648 EGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEGKV 686



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 234/490 (47%), Gaps = 46/490 (9%)

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C+S N  +    K+   D AL +F+ + +PDVVSWN+++SG+     +  AL    +M+ 
Sbjct: 37  CVS-NAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDD---NQIALNFVVRMKS 92

Query: 141 QGVRPSGFTFSILLS-TVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV    FT+S  LS  V S     G Q+  +++++GL  S++V+GNS I MY + G   
Sbjct: 93  AGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLE-SDLVVGNSFITMYSRSGSFR 151

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A  VF  M   D+ISWNSL+SG    G +G  A+  F  M   G   D  + + VI  C
Sbjct: 152 GARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTC 211

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +L   +Q+  L +K G+ S   V +  +  +SKC  LE    +F Q+   +     
Sbjct: 212 CHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWT 271

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKS 375
            MIS+       + A+ +F  M  + + P E T   +++++     ++ G + H + IK+
Sbjct: 272 TMISSN-----KDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKT 326

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF S   V +S + +YAK  +++ + + F  +  R+++SWN ++ G  QNG + E L +F
Sbjct: 327 GFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMF 386

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-------- 487
                E + P+  T  +VL A               A  E+  V  G+  +A        
Sbjct: 387 LSAAAETM-PNEYTFGSVLNAI--------------AFAEDISVKQGQRCHAHLLKLGLN 431

Query: 488 -------CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                   ++D+  + G + ++  + + M  Q    +W SI+ A + +GD +   N+  +
Sbjct: 432 SCPVVSSALLDMYAKRGNIDESEKVFNEMS-QKNQFVWTSIISAYSSHGDFETVMNLFHK 490

Query: 541 MMDLQLPSPL 550
           M+   +   L
Sbjct: 491 MIKENVAPDL 500



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 111/215 (51%), Gaps = 7/215 (3%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           DE T+ + + AC    +L +G Q+   S   GF S   V +A + ++ K  R ++++ +F
Sbjct: 2   DEVTLCLALKACRG--DLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIF 59

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVE 363
           E L   D    N ++S +      ++AL     M    +    FT S  LS  +      
Sbjct: 60  ENLVDPDVVSWNTILSGFDD---NQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFL 116

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q  S  +K+G +S+ VV +S + MY+++GS   +  +F ++  +D++SWN+++ GL+
Sbjct: 117 LGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 176

Query: 424 QNGR-AAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           Q G    E + +F +++ EG+  D ++  +V+  C
Sbjct: 177 QEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTC 211


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/618 (31%), Positives = 320/618 (51%), Gaps = 43/618 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I       S +  K IH  + KLGF +  Y+ N  + LY + G + D            
Sbjct: 136 VIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWD------------ 183

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A KVF+E+PE D+VSWNSMISGY + G    +L +F +M  
Sbjct: 184 -------------------AEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLK 224

Query: 141 QGVRPSGF-TFSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G +P  F T S L   S V S   GK+IH   +RS +   +V++  S++DMY K G + 
Sbjct: 225 CGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVS 284

Query: 198 YAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSM-RYSGYSPDEYTISIVINA 255
           YA  +F  M + +I++WN +I GC+  +G    A   F  M   +G  PD  T   ++ A
Sbjct: 285 YAERIFNGMIQRNIVAWNVMI-GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA 343

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L    +G+ +   +++ GFL + ++ +A ID++ +C +L+ +  +F+++   +    
Sbjct: 344 SAIL----EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISW 399

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIK 374
           N +I+ Y + G    ALELFQ +    + P   T++ +L +      +  G + H+  +K
Sbjct: 400 NSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVK 459

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S + SN ++ +SL+ MYA  G ++ + + F  +  +D+VSWN+I+M    +G    ++ +
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F E++   + P++ T A++L AC+  G VD+G   F +MK EYG+ PG EHY C++DL+ 
Sbjct: 520 FSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIG 579

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G    A      MPF P   IW S+L AS  + D+ + E  AE++  ++  +   Y L
Sbjct: 580 RTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVL 639

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  GRWE + R+K +M   GI++ +  S +  K + + F  G+  H    KIY V
Sbjct: 640 LLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEV 699

Query: 615 LRLLTWEMEDEGCVYLEC 632
           L +++  M  E  +Y+ C
Sbjct: 700 LDVVS-RMVGEEDIYVHC 716



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 210/374 (56%), Gaps = 9/374 (2%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           LRG   S  ++ AL++FDE+ + D   WN MI G+ SCG    A++ +S+M   GV+   
Sbjct: 71  LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130

Query: 148 FTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FT+  ++ +V   SS   GK+IH  +I+ G  +S+V + NSLI +Y KLG  + A  VF 
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGF-VSDVYVCNSLISLYMKLGCAWDAEKVFE 189

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M E DI+SWNS+ISG    G G  +L  F  M   G+ PD ++    + AC+ + +   
Sbjct: 190 EMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKM 249

Query: 265 GKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           GK++   +V+    +  + V+++ +D++SK   +  + R+F  + + +    NVMI  Y 
Sbjct: 250 GKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309

Query: 324 RYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
           R G    A   FQ M  ++ ++P   T    ++ +P   +  G   H  A++ GF  + V
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVIT---SINLLPASAILEGRTIHGYAMRRGFLPHMV 366

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + ++L++MY + G + S+  IF ++ +++++SWN+I+    QNG+    L++F+EL +  
Sbjct: 367 LETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSS 426

Query: 443 LPPDRITLAAVLLA 456
           L PD  T+A++L A
Sbjct: 427 LVPDSTTIASILPA 440



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 185/367 (50%), Gaps = 12/367 (3%)

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVINACT 257
           A  +F  M + D   WN +I G  + G    A+ QFYS M ++G   D +T   VI +  
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAV-QFYSRMVFAGVKADTFTYPFVIKSVA 141

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            + +L++GK++ A+ +K+GF+S+  V ++ I L+ K     D+ ++FE++   D    N 
Sbjct: 142 GISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNS 201

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEF-TLSCVLSSIPIPPVEHGSQFHSMAIKSG 376
           MIS Y   G G  +L LF+ ML+   +P  F T+S + +   +   + G + H  A++S 
Sbjct: 202 MISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSR 261

Query: 377 FDS-NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
            ++ + +V +S+++MY+K G +  +  IF  + +R++V+WN ++    +NGR  +    F
Sbjct: 262 IETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCF 321

Query: 436 EELLEE-GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           +++ E+ GL PD IT   +L A      ++   +   AM+   G +P       +ID+  
Sbjct: 322 QKMSEQNGLQPDVITSINLLPA---SAILEGRTIHGYAMRR--GFLPHMVLETALIDMYG 376

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYS 553
           + GQL  A  I   M  +   S W SI+ A    G       + + + D  L P     +
Sbjct: 377 ECGQLKSAEVIFDRMAEKNVIS-WNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA 435

Query: 554 LLTQAYA 560
            +  AYA
Sbjct: 436 SILPAYA 442



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 150/309 (48%), Gaps = 37/309 (11%)

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           KV    N   L+  +  F+    +ED+++LF+++++ D  + NVMI  +   G    A++
Sbjct: 57  KVTKQVNDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQ 116

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            +  M+   ++   FT   V+ S+  I  +E G + H+M IK GF S+  V +SL+ +Y 
Sbjct: 117 FYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYM 176

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G    + ++F ++ +RD+VSWN+++ G    G    +L +F+E+L+ G  PDR +  +
Sbjct: 177 KLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMS 236

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
            L AC++         V+S        M  E H        C A  +   I+    M   
Sbjct: 237 ALGACSH---------VYSPK------MGKEIH--------CHA--VRSRIETGDVM--- 268

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR-WEAIVRV 571
               +  SIL   + YG+V   E +   M+   +   + ++++   YA  GR  +A +  
Sbjct: 269 ----VMTSILDMYSKYGEVSYAERIFNGMIQRNI---VAWNVMIGCYARNGRVTDAFLCF 321

Query: 572 KKVMRKNGI 580
           +K+  +NG+
Sbjct: 322 QKMSEQNGL 330


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/604 (30%), Positives = 308/604 (50%), Gaps = 37/604 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + LI +  + KS    K++H H+ K G             L+S FG      +L D    
Sbjct: 5   TSLIAQFTNKKSLTTLKSLHTHILKSG------------SLFSFFGH-----KLID---- 43

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                      G +K   +  A K+FDE+P   +V+WNSMIS + S G +  A+E++  M
Sbjct: 44  -----------GYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNM 92

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P  +TFS +    S    +  G++ HG  +  G  +S+  +   ++DMY K G 
Sbjct: 93  LFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGK 152

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  + + D++ + +LI G    G    AL+ F  M  S   P+EYT++ V+ +
Sbjct: 153 MKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVS 212

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L +L  GK +  L VK G  S     ++ + ++SKCN +EDS+++F  L    +   
Sbjct: 213 CGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTW 272

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
              I    + G  E+AL +F+ M+R  I P  FT S +L +   +  +E G Q H++ +K
Sbjct: 273 TSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVK 332

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G D N  V ++L+ +Y K G+++ +  +F  L + D+VS NT++    QNG   E L++
Sbjct: 333 LGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALEL 392

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FE + + G  P+ +T  ++LLACN  G V++G  +FS ++  + +    +HY C+IDLL 
Sbjct: 393 FERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLG 452

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +A +  +A  +       P    W ++L A  I+G+V++ E   ++M+D        + L
Sbjct: 453 RAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHIL 511

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           LT  YA  G+W+ ++ +K   R   + K    SW+ I   ++TF AG+L H    +I  +
Sbjct: 512 LTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEM 571

Query: 615 LRLL 618
           L  L
Sbjct: 572 LHEL 575


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/568 (31%), Positives = 296/568 (52%), Gaps = 44/568 (7%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  +L++F+ I  P  ++W S+I  Y S G    +L  F  M   G+ P    F  +L +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA-------------- 199
            +       G+ +HG +IR GL   ++  GN+L++MY KL  L  +              
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDF-DLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEM 174

Query: 200 ------------------FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
                               +F  M E D++SWN++I+G   +G  E  L     M  + 
Sbjct: 175 TERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN 234

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD +T+S V+    +  ++ +GK++   S++ G  ++  V S+ ID+++KC R+ DS 
Sbjct: 235 LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           R+F  L   D    N +I+   + G  +  L  F+ ML   I+P  ++ S ++ +     
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 362 VEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
             H G Q H    ++GFD N  +ASSL++MYAK G+I ++ +IF ++  RD+VSW  ++M
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIM 414

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G   +G+A + +++FE++  EG+        AVL AC++GG VD+    F++M  ++G+ 
Sbjct: 415 GCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIA 467

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           PG EHYA + DLL +AG+L +A D    M   P  SIW ++L A  ++ ++ + E VA R
Sbjct: 468 PGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANR 527

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++++   +   Y LL   Y+   RW+   + +  MR+ GI K   CSWI +KN++Y F A
Sbjct: 528 ILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMA 587

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           G+  H   +KI   + +L   ME EG V
Sbjct: 588 GDESHPCYEKIREAMEVLVELMEKEGYV 615



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 174/334 (52%), Gaps = 17/334 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD-------VLQLF 73
           ++  C      +  +++HG++ ++G +   Y GN  +++YS+    ++         ++F
Sbjct: 112 VLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVF 171

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           DE+ ++   + ++    +L  D++    K+F+ +PE D+VSWN++I+G A  G  +  L 
Sbjct: 172 DEMTER---TRSVRTVSVLSEDSVR---KIFEMMPEKDLVSWNTIIAGNARNGLYEETLR 225

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           M  +M    ++P  FT S +L  ++       GK+IHG  IR GL  +++ + +SLIDMY
Sbjct: 226 MIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLD-ADIYVASSLIDMY 284

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K   +  +  VF  + E D ISWNS+I+GC  +G  +  L  F  M  +   P  Y+ S
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++ AC  L  L  GKQ+     + GF  N  + S+ +D+++KC  +  + ++F+++   
Sbjct: 345 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR 404

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           D      MI     +G    A+ELF+ M  E I+
Sbjct: 405 DMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK 438



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 186/419 (44%), Gaps = 37/419 (8%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           ++ S    +Q+H  +++     S++   + L+ +Y  + +L+ +  +F  +     ++W 
Sbjct: 18  SIKSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWK 75

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           S+I    + G    +L  F  M  SG  PD      V+ +C  L +L+ G+ +    ++V
Sbjct: 76  SVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRV 135

Query: 276 GFLSNSIVLSATIDLFSKCNRL-------------------------------EDSVR-L 303
           G   +    +A ++++SK   L                               EDSVR +
Sbjct: 136 GLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKI 195

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PV 362
           FE +   D    N +I+   R G  E  L + + M   +++P  FTLS VL  I     +
Sbjct: 196 FEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDI 255

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G + H  +I+ G D++  VASSL++MYAK   +  S  +F  L +RD +SWN+I+ G 
Sbjct: 256 SRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGC 315

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            QNG   E L  F ++L   + P   + ++++ AC +   +  G  +   +    G    
Sbjct: 316 VQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDEN 374

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
               + ++D+  + G +  A  I   M  +   S W +++   A++G       + E+M
Sbjct: 375 IFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHGQAPDAIELFEQM 432



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           A +   S S+ S ++  C    +    K +HG++ + GF+ + ++ +  +D+Y++ G   
Sbjct: 334 AKIKPKSYSF-SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIR 392

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              Q+FD +  ++ +SW   + G         A+++F+++    +    ++++  +  G 
Sbjct: 393 TAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGI---KAVLTACSHGGL 449

Query: 128 SDYALEMFSKMQLQ-GVRP 145
            D A + F+ M    G+ P
Sbjct: 450 VDEAWKYFNSMTRDFGIAP 468


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 333/639 (52%), Gaps = 57/639 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +K A V   + +Y + L   C+  + F     +   + K G  +   +GN  + +YSR G
Sbjct: 165 MKSAGVVFDAFTYSTAL-SFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSG 223

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +                       RG         A +VFDE+   D++SWNS++SG + 
Sbjct: 224 S----------------------FRG---------ARRVFDEMSFKDMISWNSLLSGLSQ 252

Query: 125 CGYSDY-ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSL 177
            G   + A+ +F  M  +GV     +F+   S +++ CH       +QIHG  I+ G   
Sbjct: 253 EGTFGFEAVVIFRDMMREGVELDHVSFT---SVITTCCHETDLKLARQIHGLCIKRGYE- 308

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           S + +GN L+  Y K GVL     VF  M E +++SW ++IS   +      A+  F +M
Sbjct: 309 SLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDD-----AVSIFLNM 363

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R+ G  P+E T   +INA      + +G ++  L +K GF+S   V ++ I L++K   L
Sbjct: 364 RFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEAL 423

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           ED+ + FE +   +    N MIS + + GF   AL++F L    +  P E+T   VL++I
Sbjct: 424 EDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMF-LSAAAETMPNEYTFGSVLNAI 482

Query: 358 PIP---PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                  V+ G + H+  +K G +S  VV+S+L++MYAK G+ID S ++F ++ +++   
Sbjct: 483 AFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFV 542

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W +I+   + +G     +++F ++++E + PD +T  +VL ACN  G VDKG  +F+ M 
Sbjct: 543 WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMI 602

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           E Y + P  EHY+C++D+L +AG+L +A ++ S +P  PG S+ +S+L +  ++G+VK+ 
Sbjct: 603 EVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMG 662

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN- 593
             VAE  M+++      Y  +   YA +  W+    ++K MRK  ++K  G SWI + + 
Sbjct: 663 AKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDT 722

Query: 594 ----RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
                +  F++G+  H    +IY ++ ++  EM  EG V
Sbjct: 723 EGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEGKV 761



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 234/490 (47%), Gaps = 46/490 (9%)

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C+S N  +    K+   D AL +F+ + +PDVVSWN+++SG+     +  AL    +M+ 
Sbjct: 112 CVS-NAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDD---NQIALNFVVRMKS 167

Query: 141 QGVRPSGFTFSILLS-TVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV    FT+S  LS  V S     G Q+  +++++GL  S++V+GNS I MY + G   
Sbjct: 168 AGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLE-SDLVVGNSFITMYSRSGSFR 226

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A  VF  M   D+ISWNSL+SG    G +G  A+  F  M   G   D  + + VI  C
Sbjct: 227 GARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTC 286

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +L   +Q+  L +K G+ S   V +  +  +SKC  LE    +F Q+   +     
Sbjct: 287 CHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWT 346

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKS 375
            MIS+       + A+ +F  M  + + P E T   +++++     ++ G + H + IK+
Sbjct: 347 TMISSN-----KDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKT 401

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF S   V +S + +YAK  +++ + + F  +  R+++SWN ++ G  QNG + E L +F
Sbjct: 402 GFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMF 461

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-------- 487
                E + P+  T  +VL A               A  E+  V  G+  +A        
Sbjct: 462 LSAAAETM-PNEYTFGSVLNAI--------------AFAEDISVKQGQRCHAHLLKLGLN 506

Query: 488 -------CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                   ++D+  + G + ++  + + M  Q    +W SI+ A + +GD +   N+  +
Sbjct: 507 SCPVVSSALLDMYAKRGNIDESEKVFNEMS-QKNQFVWTSIISAYSSHGDFETVMNLFHK 565

Query: 541 MMDLQLPSPL 550
           M+   +   L
Sbjct: 566 MIKENVAPDL 575



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 7/221 (3%)

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
           Y G   DE T+ + + AC    +L +G Q+   S   GF S   V +A + ++ K  R +
Sbjct: 71  YFGRHMDEVTLCLALKACRG--DLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFD 128

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SI 357
           +++ +FE L   D    N ++S +      ++AL     M    +    FT S  LS  +
Sbjct: 129 NALCIFENLVDPDVVSWNTILSGFDD---NQIALNFVVRMKSAGVVFDAFTYSTALSFCV 185

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
                  G Q  S  +K+G +S+ VV +S + MY+++GS   +  +F ++  +D++SWN+
Sbjct: 186 GSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNS 245

Query: 418 IMMGLTQNGR-AAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++ GL+Q G    E + +F +++ EG+  D ++  +V+  C
Sbjct: 246 LLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTC 286


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 186/584 (31%), Positives = 297/584 (50%), Gaps = 35/584 (5%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A  IH  L      +  +L N  L+LY++ G+ D  L LF   P  +             
Sbjct: 46  ATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDS------------- 92

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                            +VVSW S+I+          AL  F+ M+  GV P+ +TFS +
Sbjct: 93  ----------------KNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAV 136

Query: 154 LST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LS     +++ HG+Q+H  + + G  L+ V + ++L+DMY K   +  A  VF  M   +
Sbjct: 137 LSACTDTTASVHGEQMHSLVWKHGF-LAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRN 195

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSP-DEYTISIVINACTKLRNLDKGKQVF 269
           ++SWN++I G   +   + A+  F ++     +  DE + S V +AC    NL+ GKQV 
Sbjct: 196 LVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVH 255

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            +++K+G  +   + ++  D++ KC    D  +LF      D    N+MI  Y      E
Sbjct: 256 GVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYE 315

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A   F +M R+   P E + S VL S   +  +  G+  H+  I+SGF  N  VASSL+
Sbjct: 316 DACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLI 375

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYAK GS+  + +IF + + R++V W  I+    Q+G A   +++FE++L EG+ PD I
Sbjct: 376 TMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYI 435

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +VL AC++ G V++G   F++M + +G+ PG EHYACI+DLL +AG+L +A      
Sbjct: 436 TFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIEL 495

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP +P  S+W ++L A   + ++ + + VA ++ DL+  +P  Y LL       G     
Sbjct: 496 MPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEA 555

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
             V++ M   G+ K  GCSWI IKN  Y F   +  H   ++IY
Sbjct: 556 DEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIY 599



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 44/343 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C +  + +F K +HG   KLG     Y+ N   D+Y + G  +DV +LF     
Sbjct: 236 SSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGA 295

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++WNI +   + + N + A   F          W                      M
Sbjct: 296 RDVVTWNIMIMAYVYNHNYEDACNSF----------W---------------------MM 324

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +G  P   ++S +L   + +++   G  IH  +IRSG  + N+ + +SLI MY K G 
Sbjct: 325 RRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGF-VKNLRVASSLITMYAKCGS 383

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  AF +F   E+ +++ W ++I+ C   G+    ++ F  M   G  PD  T   V++A
Sbjct: 384 LVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSA 443

Query: 256 CTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    +++G   F   +KV G        +  +DL S+   L+ + R  E +  + D +
Sbjct: 444 CSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDAS 503

Query: 314 VINVMISTYGRYGF----GEVALELFQLMLREDIRPTEFTLSC 352
           V   ++S    +       EVAL+LF L   E   P  + L C
Sbjct: 504 VWGALLSACRNHSNLIMGKEVALKLFDL---EPDNPGNYVLLC 543


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 184/633 (29%), Positives = 319/633 (50%), Gaps = 47/633 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   KS    K +H  +          LG + + LY+  G   +  ++FD + +
Sbjct: 103 SSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEK 162

Query: 79  KNCISWN---------------ICLRGLLKSDNLD-----TALKVFDEIPEPDVVSWNSM 118
           KN   WN               ICL  ++    ++     +A ++FD++ + DV+SWNSM
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSM 222

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLSTVSSACH--GKQIHGSMIRSGL 175
           ISGY S G ++  LE++ +M   G+     T  S+L+   +S     GK +H   I+S  
Sbjct: 223 ISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTF 282

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
               +   N+L+DMY K G L  A  VF  M E +++SW S+I+G    G  + A+    
Sbjct: 283 E-RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQ 341

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M   G   D    + +++AC +  +LD GK V          SN  V +A +D+++KC 
Sbjct: 342 QMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCG 401

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            ++ +  +F  +   D    N MI                      +++P   T++C+L 
Sbjct: 402 SMDGANSVFSTMVVKDIISWNTMIG---------------------ELKPDSRTMACILP 440

Query: 356 SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +   +  +E G + H   +++G+ S+  VA++L+++Y K G +  +  +F  +  +DLVS
Sbjct: 441 ACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVS 500

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W  ++ G   +G   E +  F E+ + G+ PD ++  ++L AC++ G +++G   F  MK
Sbjct: 501 WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
            ++ + P  EHYAC++DLL + G L KA +   T+P  P  +IW ++L    IY D++L 
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
           E VAER+ +L+  +   Y LL   YA   +WE + R+++ + K G+ K  GCSWI IK +
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680

Query: 595 IYTFNAGELQHH-GGQKIYLVLRLLTWEMEDEG 626
           +  F +G    H   +KI  +L+ +  +M++EG
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEG 713



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 158/370 (42%), Gaps = 68/370 (18%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S V+  C   ++L  GK+V ++        + ++    + L++ C  L++  R+F+ +
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI---RPTEFTL-------------- 350
           ++ +  + N M+S Y + G  + ++ LF++M+ + I   RP   +               
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 351 SCVLSSIPIPPVEHGSQFHSMAIKSGFDSN-AVVASSL---------------------- 387
           S +   +     E G + +   +  G D + A + S L                      
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 388 ------------MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
                       ++MY+K G +D +  +F K+ +R++VSW +++ G T++GR+   + + 
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--IIDLL 493
           +++ +EG+  D +   ++L AC   G +D G  V   +K           + C  ++D+ 
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANN---MESNLFVCNALMDMY 397

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            + G +  A  + STM       + + I+  + + G++K       R M   LP+    S
Sbjct: 398 TKCGSMDGANSVFSTM-------VVKDIISWNTMIGELKPD----SRTMACILPACASLS 446

Query: 554 LLTQAYAMRG 563
            L +   + G
Sbjct: 447 ALERGKEIHG 456


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 186/624 (29%), Positives = 322/624 (51%), Gaps = 41/624 (6%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + ++  C   +  +  + +H  + K  F  + ++ N  +D+Y++ G              
Sbjct: 454  TSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGA------------- 500

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                              L+ A + F+ I   D VSWN++I GY      D A  MF +M
Sbjct: 501  ------------------LEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRM 542

Query: 139  QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             L G+ P   + + +LS    + +   G+Q+H  +++SGL  + +  G+SLIDMY K G 
Sbjct: 543  ILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQ-TCLYAGSSLIDMYVKCGA 601

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            +  A  VF  M    ++S N++I+G   +   E A+D F  M+  G +P E T + +++A
Sbjct: 602  IEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDA 660

Query: 256  CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQLDRWDYAV 314
            CT    L+ G+Q+  L  K G L +   L  ++  ++    R  D+  LF +       +
Sbjct: 661  CTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTI 720

Query: 315  I-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMA 372
            +   +IS + + G  E AL+L+Q M R + RP + T + VL +  I   +  G   HS+ 
Sbjct: 721  LWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLI 780

Query: 373  IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAET 431
               G DS+ +  S++++MYAK G + SS ++F ++  K D++SWN++++G  +NG A   
Sbjct: 781  FHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENA 840

Query: 432  LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
            L +F+E+    + PD +T   VL AC++ G V +G  +F  M   Y ++P  +H AC+ID
Sbjct: 841  LKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMID 900

Query: 492  LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
            LL + G L +A +    + F+P   IW ++L A  I+GD       AE++++L+  +  P
Sbjct: 901  LLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSP 960

Query: 552  YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
            Y LL+  YA  G W+ +  V++ MR+ G+ K+ GCSWI +  +   F AG+  H    +I
Sbjct: 961  YVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEI 1020

Query: 612  YLVLRLLTWEMEDEGCVYLECDKL 635
            + +L+ L   M+++G +  E D L
Sbjct: 1021 HALLKDLIALMKEDGYI-AETDSL 1043



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 145/482 (30%), Positives = 248/482 (51%), Gaps = 48/482 (9%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C++L+D        D  K +H  + K+GF  +++     +D+YS+ G+  D  ++FD
Sbjct: 189 LSSCARLVD-------IDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFD 241

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFD----------------------------- 105
            +   + +SW   + G ++    + ALKVF+                             
Sbjct: 242 AVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDD 301

Query: 106 ------EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
                 ++P  +VV+WN MISG+   G    A++ F  M   GV+ +  T   +LS ++S
Sbjct: 302 ACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIAS 361

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                +G  +H   I+ GL+ SNV +G+SLI+MY K   +  A  VF  ++E +++ WN+
Sbjct: 362 LEALNYGLLVHAQAIKQGLN-SNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNA 420

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           ++ G   +GY    +  F  MR  G+ PDE+T + +++AC  L  L+ G+Q+ +  +K  
Sbjct: 421 MLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHN 480

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F  N  V +  +D+++KC  LE++ + FE +   D    N +I  Y +    + A  +F+
Sbjct: 481 FEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFR 540

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M+ + I P E +L+ +LS    +  +E G Q H   +KSG  +     SSL++MY K G
Sbjct: 541 RMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCG 600

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           +I+++  +F  +  R +VS N I+ G  QN    E +D+F+E+  EGL P  IT A++L 
Sbjct: 601 AIEAARYVFSCMPSRSVVSMNAIIAGYAQND-LVEAIDLFQEMQNEGLNPSEITFASLLD 659

Query: 456 AC 457
           AC
Sbjct: 660 AC 661



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 208/428 (48%), Gaps = 71/428 (16%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           +KTIH    K GF +   LG+  +DLY++ G                             
Sbjct: 100 SKTIHAQTLKFGFGSKGRLGSAIVDLYAKCG----------------------------- 130

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
             N++ A K F+++ + D+++WNS++S Y+  G  +  +  F  +Q  GV P+ FT++I+
Sbjct: 131 --NVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIV 188

Query: 154 LSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LS+ +       GKQ+H  +I+ G   ++   G SLIDMY K G L  A  +F  + + D
Sbjct: 189 LSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEG-SLIDMYSKCGSLVDARKIFDAVVDPD 247

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +SW ++I+G    G  E AL  F  M+  G  PD+     VI AC  L           
Sbjct: 248 TVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL----------- 296

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
                                    RL+D+  LF Q+   +    NVMIS + + G    
Sbjct: 297 ------------------------GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIE 332

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A++ F+ M +  ++ T  TL  VLS+I  +  + +G   H+ AIK G +SN  V SSL+ 
Sbjct: 333 AIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLIN 392

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK   ++++ ++F  LD+R+LV WN ++ G  QNG A++ + +F E+   G  PD  T
Sbjct: 393 MYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFT 452

Query: 450 LAAVLLAC 457
             ++L AC
Sbjct: 453 YTSILSAC 460



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/563 (24%), Positives = 264/563 (46%), Gaps = 47/563 (8%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K++ S    ++    S ++ ++   +H    K G N++ Y+G+  +++Y++    +   +
Sbjct: 346 KSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKK 405

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +FD + ++N + WN                               +M+ GYA  GY+   
Sbjct: 406 VFDALDERNLVLWN-------------------------------AMLGGYAQNGYASKV 434

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC-----HGKQIHGSMIRSGLSLSNVVLGNSL 186
           +++FS+M+  G  P  FT++ +LS  + AC      G+Q+H  +I+      N+ + N+L
Sbjct: 435 MKLFSEMRGCGFWPDEFTYTSILS--ACACLECLEMGRQLHSFIIKHNFEY-NLFVENTL 491

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMY K G L  A   F  +   D +SWN++I G       + A + F  M   G +PDE
Sbjct: 492 VDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDE 551

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            +++ +++ C  L+ L++G+QV    VK G  +     S+ ID++ KC  +E +  +F  
Sbjct: 552 VSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSC 611

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHG 365
           +       +N +I+ Y +    E A++LFQ M  E + P+E T + +L +   P  +  G
Sbjct: 612 MPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLG 670

Query: 366 SQFHSMAIKSG--FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGL 422
            Q H +  K G  +D +  +  SL+ MY  +     +  +F +    +  + W  I+ G 
Sbjct: 671 RQIHCLIQKRGLLYDGD-FLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGH 729

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
           TQNG + E L +++E+      PD+ T A+VL AC+    +  G ++ S +    G+   
Sbjct: 730 TQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIF-HVGLDSD 788

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           E   + ++D+  + G +  ++ +   M  +     W S++   A  G  +    + + M 
Sbjct: 789 ELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMK 848

Query: 543 DLQL-PSPLPYSLLTQAYAMRGR 564
             ++ P  + +  +  A +  GR
Sbjct: 849 HTRIRPDDVTFLGVLTACSHAGR 871



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 159/313 (50%), Gaps = 36/313 (11%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K IH   ++ G   S   LG++++D+Y K G + +A   F  +E+ DI++WNS++S    
Sbjct: 101 KTIHAQTLKFGFG-SKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSR 159

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G  E  +  F S++  G SP+++T +IV+++C +L ++D GKQV    +K+GF  NS  
Sbjct: 160 QGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFC 219

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
             + ID++SKC  L D+ ++F+ +   D      MI+ Y + G  E AL++F+ M +  +
Sbjct: 220 EGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGL 279

Query: 344 RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            P +     V+++                                      G +D + ++
Sbjct: 280 VPDQVAFVTVITAC----------------------------------VGLGRLDDACDL 305

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           FV++   ++V+WN ++ G  + G   E +D F+ + + G+   R TL +VL A      +
Sbjct: 306 FVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEAL 365

Query: 464 DKGMLVFS-AMKE 475
           + G+LV + A+K+
Sbjct: 366 NYGLLVHAQAIKQ 378


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 187/595 (31%), Positives = 302/595 (50%), Gaps = 63/595 (10%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L  L+KS  L  AL +FD +P  +VV+W S++SG    G  + AL MF+ M   GV P+ 
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPND 114

Query: 148 FTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F  +  L   + + +   G+Q+H   +R+G +  +  +G+ LI+MY + G L  A  VF 
Sbjct: 115 FACNAALVACADLGALRAGEQVHSLAVRAGFA-GDAWIGSCLIEMYSRCGSLPAAKEVFD 173

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M+  D++ + SLIS    +G  ELA +    M   G  P+E+T++ ++ AC ++     
Sbjct: 174 RMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL---- 229

Query: 265 GKQVFA-LSVKVGFLSNSIVLS-ATIDLFSKCNRLED-------------SVRLFEQLD- 308
           G+Q+   L  K+G  S S+  S A ID +S+   ++              S+ L  QL  
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHC 289

Query: 309 -------RWDYAVINVMISTYGRYG-------------------------------FGEV 330
                    D  V N ++S YGR G                               FGE 
Sbjct: 290 SAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEK 349

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+ L   M  E   P  +  S VLSS   +  ++ G QFH +A+K G DS     ++L+ 
Sbjct: 350 AIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALIN 409

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K G + S+   F  +   D+ SWN+++ G  Q+G A + L+VF ++   G+ PD  T
Sbjct: 410 MYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDST 469

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              VL+ CN+ G V++G L F  M ++Y   P   HYAC+ID+L + G+  +A+ + + M
Sbjct: 470 FLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDM 529

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PF+P   IW+++L +  ++ ++ + +  A+R+M+L       Y L++  YAM G WE   
Sbjct: 530 PFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDAR 589

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           +V++ M + G+ K  GCSWI I N ++TF + ++ H     IY +L  L   M+D
Sbjct: 590 KVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 644



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 59/417 (14%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +VVL    ++   K G L  A  +F  M   ++++W S++SGC  +G  E AL  F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMV 106

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG +P+++  +  + AC  L  L  G+QV +L+V+ GF  ++ + S  I+++S+C  L 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +  +F+++D  D      +IS + R G  E+A E    ML++ ++P E T++ +L++ P
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 226

Query: 359 -------------------------------------IPPVEH--------------GSQ 367
                                                + P E               G Q
Sbjct: 227 RVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQ 286

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H  AIK    ++  V+++L+ MY +TG ++    +  K++  DLVSW T +    QNG 
Sbjct: 287 LHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGF 346

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             + + +  ++  EG  P+    ++VL +C     +D+GM  F  +  + G         
Sbjct: 347 GEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGM-QFHCLALKLGCDSEICTGN 405

Query: 488 CIIDLLCQAGQLGK---AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +I++  + GQ+G    A D+  T       + W S++   A +GD      V  +M
Sbjct: 406 ALINMYSKCGQMGSARLAFDVMHTHDV----TSWNSLIHGHAQHGDANKALEVFSKM 458



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 200/432 (46%), Gaps = 36/432 (8%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+  +  C    +    + +H    + GF    ++G+  +++YSR G+     ++FD + 
Sbjct: 117 CNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMD 176

Query: 78  QKNCISWNICLRGLLKSDNLDTA----LKVFDEIPEPDVVSWNSM-----------ISGY 122
             + + +   +    ++   + A    +++  +  +P+  +  ++           I GY
Sbjct: 177 SPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGY 236

Query: 123 --------ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG 174
                   +   YS  AL  F     +GV P+ F  SI+L    S   G+Q+H S I+  
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRN-EGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHD 295

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
           L ++++ + N+L+ MYG+ G++     +   +E  D++SW + IS  F +G+GE A+   
Sbjct: 296 L-ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALL 354

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M   G++P+ Y  S V+++C  + +LD+G Q   L++K+G  S     +A I+++SKC
Sbjct: 355 CQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKC 414

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT----- 349
            ++  +   F+ +   D    N +I  + ++G    ALE+F  M    I+P + T     
Sbjct: 415 GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVL 474

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           + C  S +    VE G  F  + I    F       + +++M  + G  D +  +   + 
Sbjct: 475 MGCNHSGM----VEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 530

Query: 409 -KRDLVSWNTIM 419
            + D + W T++
Sbjct: 531 FEPDALIWKTLL 542



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 54/234 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    S D     H    KLG ++    GN  +++YS+ G              
Sbjct: 370 SSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCG-------------- 415

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             + +A   FD +   DV SWNS+I G+A  G ++ ALE+FSKM
Sbjct: 416 -----------------QMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKM 458

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           +  G++P   TF  +L   +        H  M+  G     +++              +I
Sbjct: 459 RSNGIKPDDSTFLGVLMGCN--------HSGMVEEGELFFRLMIDQYSFTPAPSHYACMI 510

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM 237
           DM G+ G    A  +  +M  E D + W +L++ C    N   G+LA D+   +
Sbjct: 511 DMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMEL 564


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/557 (31%), Positives = 303/557 (54%), Gaps = 36/557 (6%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A  +H  +FK GF   + + +  +++YS+ G  D   ++F E+                 
Sbjct: 368 AVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTK------------- 414

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                            ++  W  MIS +A  G +  A+E+F +M  +G+RP  F  S +
Sbjct: 415 -----------------NLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSV 457

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           LS + S   G+ IH  +++ GL  +++ +G+SL  MY K G L  ++ VF  M + D +S
Sbjct: 458 LSIIDSLSLGRLIHCYILKIGL-FTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVS 516

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV--FAL 271
           W S+I+G     + E A+  F  M      PD+ T++  + AC+ L +L+KGK+V  +AL
Sbjct: 517 WASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYAL 576

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             +VG     +V  A ++++SKC  +  + R+F+ L + D    + ++S Y + G+ E A
Sbjct: 577 RARVG--KEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDA 634

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L LF  +   D+    FT+S V+ ++ I   ++ G+Q H+   K G ++   V SSL+ M
Sbjct: 635 LLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTM 694

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K GSID   ++F +++K DL+SW  +++   Q+G+ AE L V++ + +EG  PD +T 
Sbjct: 695 YSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTF 754

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             VL AC++ G V++G    ++M +EYG+ PG  HYAC++DLL ++G+L +A    + MP
Sbjct: 755 VGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMP 814

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P   +W  +L A  ++GD++L    A+R+++L+      Y  L+   A  G WE +++
Sbjct: 815 IEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMK 874

Query: 571 VKKVMRKNGINKVTGCS 587
           ++ +M   G+ K  G S
Sbjct: 875 IRSLMEGTGVKKEPGWS 891



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 209/375 (55%), Gaps = 7/375 (1%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           + + AL+VF ++   +VV WN++ISG      +  AL++F +M  +   P+ FTFS +L+
Sbjct: 197 SFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILT 256

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             ++      G+ + G +I+ G    +V +G ++ID+Y K   +  A   FL M   +++
Sbjct: 257 ACAALEELEFGRGVQGWVIKCGAG-EDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVV 315

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW ++ISG         A   F  MR  G   + YTI+ V+ ACT+   + +  Q+ +  
Sbjct: 316 SWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWI 375

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVINVMISTYGRYGFGEVA 331
            K GF  +S V SA I+++SK   ++ S R+F +++   + A+  VMIS + + G    A
Sbjct: 376 FKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRA 435

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +ELFQ ML+E +RP +F  S VLS   I  +  G   H   +K G  ++  V SSL  MY
Sbjct: 436 VELFQRMLQEGLRPDKFCSSSVLS--IIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMY 493

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K GS++ S  +F ++  +D VSW +++ G +++  A + + +F E+L E + PD++TL 
Sbjct: 494 SKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLT 553

Query: 452 AVLLACNYGGFVDKG 466
           A L AC+    ++KG
Sbjct: 554 AALTACSALHSLEKG 568



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 203/384 (52%), Gaps = 6/384 (1%)

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           I Q N    N  +    KS+++  AL++FD+ P P+V+SWN +ISG       + +   F
Sbjct: 76  ILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNF 135

Query: 136 SKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KM+  G  P+ FT+  +LS  +   S  +G+ ++   +++G   SN  +   +ID++ K
Sbjct: 136 CKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGF-FSNGYVRAGMIDLFAK 194

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           L     A  VF ++   +++ WN++ISG   +    +ALD F  M    + P+ +T S +
Sbjct: 195 LCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSI 254

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC  L  L+ G+ V    +K G   +  V +A IDL++KC  ++ +V+ F ++   + 
Sbjct: 255 LTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNV 314

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSM 371
                +IS + +      A   F+ M +   +   +T++ VL++   P  ++   Q HS 
Sbjct: 315 VSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSW 374

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAE 430
             K+GF  ++ V+S+L+ MY+K G +D S  +F +++  ++L  W  ++    Q+G    
Sbjct: 375 IFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGR 434

Query: 431 TLDVFEELLEEGLPPDRITLAAVL 454
            +++F+ +L+EGL PD+   ++VL
Sbjct: 435 AVELFQRMLQEGLRPDKFCSSSVL 458



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 190/380 (50%), Gaps = 2/380 (0%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K +H   +++ +  SN  + NSL+  Y K   + +A  +F      ++ISWN LISGC  
Sbjct: 65  KILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQ 124

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +   E +   F  MR+SG+ P+++T   V++ACT L +   G+ V++L++K GF SN  V
Sbjct: 125 NFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYV 184

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +  IDLF+K    ED++R+F+ +   +    N +IS   +     VAL+LF  M     
Sbjct: 185 RAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFF 244

Query: 344 RPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P  FT S +L++   +  +E G       IK G   +  V ++++++YAK   +D + +
Sbjct: 245 MPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVK 304

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
            F+++  R++VSW TI+ G  Q   +      F+E+ + G   +  T+ +VL AC     
Sbjct: 305 EFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVM 364

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           + + + + S + +  G        + +I++  + G +  +  +   M      ++W  ++
Sbjct: 365 IKEAVQLHSWIFKT-GFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMI 423

Query: 523 RASAIYGDVKLTENVAERMM 542
            A A  G       + +RM+
Sbjct: 424 SAFAQSGSTGRAVELFQRML 443


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 184/627 (29%), Positives = 314/627 (50%), Gaps = 47/627 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   KSF   K +H  +          LG + +  Y+  G   +  ++FD + +KN   W
Sbjct: 109 CAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 85  N---------------ICLRGLLKSDNLD-----TALKVFDEIPEPDVVSWNSMISGYAS 124
           N               ICL  ++    ++     +A ++FD++ + DV+SWNSMISGY S
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVS 228

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTF-SILLSTVSSACH--GKQIHGSMIRSGLSLSNVV 181
            G ++  L ++ +M   G+     T  S+L+   +S     GK +H   I+S      + 
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE-RRIN 287

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             N+L+DMY K G L  A  VF  M E +++SW S+I+G    G  + A+     M   G
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEG 347

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D   I+ +++AC +  +LD GK V          SN  V +A +D+++KC  +E + 
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAAN 407

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            +F  +   D    N MI                      +++P   T++CVL +   + 
Sbjct: 408 SVFSTMVVKDIISWNTMIG---------------------ELKPDSRTMACVLPACASLS 446

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G + H   +++G+ S+  VA++L+++Y K G +  +  +F  +  +DLVSW  ++ 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G   +G   E +  F E+ + G+ PD ++  ++L AC++ G +++G   F  MK ++ + 
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIE 566

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  EHYAC++DLL + G L KA +   T+P  P  +IW ++L     Y D++L E VAER
Sbjct: 567 PKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAER 626

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           + +L+  +   Y LL   YA   +WE + R+++ + K G+ K  GCSWI IK ++  F +
Sbjct: 627 VFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVS 686

Query: 601 GELQHHGGQK-IYLVLRLLTWEMEDEG 626
           G    H   K I  +L+ +  +M++EG
Sbjct: 687 GNNSSHPHSKNIESLLKKMRRKMKEEG 713



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 111/292 (38%), Gaps = 79/292 (27%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    S D  K +H ++      ++ ++ N  +D+Y++ G+ +    +F  +  
Sbjct: 356 TSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVV 415

Query: 79  KNCISWNICLRGLLKSDN------------------------------------------ 96
           K+ ISWN  + G LK D+                                          
Sbjct: 416 KDIISWNTMI-GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALV 474

Query: 97  --------LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                   L  A  +FD IP  D+VSW  MI+GY   GY + A+  F++M+  G+ P   
Sbjct: 475 DLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEV 534

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGVLY 197
           +F  +L   S        H  ++  G     ++  +            ++D+  + G L 
Sbjct: 535 SFISILYACS--------HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLS 586

Query: 198 YAFGVFLNMEEL----DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
            A+     ME L    D   W +L+ GC N  Y ++ L +  + R     P+
Sbjct: 587 KAYEF---METLPIAPDATIWGALLCGCRN--YHDIELAEKVAERVFELEPE 633


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 171/577 (29%), Positives = 308/577 (53%), Gaps = 45/577 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+    + + +++H    K+G  A  ++ N  +D+Y+                       
Sbjct: 176 CIRSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYA----------------------- 211

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K+++L+ A KVF+ IP+ +VVSW SMISG    G++   L +F+KM+   V 
Sbjct: 212 --------KAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVP 263

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           PS +T    ++TV +AC        G+ +HGS+I+ GL +SN  +  +L+DMY K G L 
Sbjct: 264 PSEYT----IATVITACSALFGLHQGRWMHGSVIKQGL-MSNSFISAALLDMYVKCGELD 318

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           +A  VF  +  +D++ W ++I G   +G    AL  F   R++  +P+  T + V++A  
Sbjct: 319 HARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASA 378

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +LR+L  GK +  L+VK+G +  ++V +A +D+++KC  + ++ R+F ++   D    N 
Sbjct: 379 QLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNS 438

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           MIS Y     G+ AL LF+ M  +   P   ++   LS S+ +  +  G   H  A+K  
Sbjct: 439 MISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHA 498

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F SN  V ++L+ +Y K G + S+  +F +++ R+ V+W  ++ G    G +A ++ +F 
Sbjct: 499 FVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFG 558

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+L++G+ P+ I   ++L  C++ G V  G   F +M + + + P  +HYAC++D+L +A
Sbjct: 559 EMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARA 618

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L  A++    MP Q   S+W + L    ++  ++  E   +RMM L    P  Y L++
Sbjct: 619 GNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLIS 678

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
             Y   G W+  + +++ M++ G+ K+ GCS +G +N
Sbjct: 679 NLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSVGHEN 715



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 190/368 (51%), Gaps = 9/368 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG---FTFSI 152
           +L +A  VFD  P PD  S+ +M+           A+ +   M+ +   P     F  S+
Sbjct: 112 DLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSL 171

Query: 153 LL-STVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L + + SA   +G+ +H   I+ G +   V+  NSL+DMY K   L  A  VF  + + 
Sbjct: 172 ALKACIRSAEYSYGRSLHCDAIKVGGADGFVM--NSLVDMYAKAEDLECARKVFERIPDR 229

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +++SW S+ISGC  +G+    L  F  MR     P EYTI+ VI AC+ L  L +G+ + 
Sbjct: 230 NVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMH 289

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G +SNS + +A +D++ KC  L+ +  +F++L   D  +   MI  Y + G   
Sbjct: 290 GSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPL 349

Query: 330 VALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF      +I P   T + VLS S  +  +  G   H +A+K G     VV ++L+
Sbjct: 350 DALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALV 409

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK  ++  +  IF ++  +D+V+WN+++ G  +N    + L +F+++  +G  PD I
Sbjct: 410 DMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAI 469

Query: 449 TLAAVLLA 456
           ++   L A
Sbjct: 470 SVVNALSA 477



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 211/474 (44%), Gaps = 46/474 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C +       + +HG + K G  +++++    LD+Y + G  D    +FDE+  
Sbjct: 270 ATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSY 329

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + + W                                +MI GY   G    AL +F   
Sbjct: 330 IDLVLW-------------------------------TTMIVGYTQNGNPLDALRLFLDK 358

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   + P+  T + +LS    +     GK IHG  ++ GL   NVV GN+L+DMY K   
Sbjct: 359 RFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVV-GNALVDMYAKCQA 417

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F  +   D+++WNS+ISG   +  G+ AL  F  M   G SPD  ++   ++A
Sbjct: 418 VSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSA 477

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L +L  GK +   +VK  F+SN  V +A ++L++KC  L  + R+F++++  +    
Sbjct: 478 SVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTW 537

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAI 373
             MI  YG  G    ++ LF  ML++ + P +   + +LS+     +    +  F SMA 
Sbjct: 538 CAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQ 597

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGR---AA 429
                 +    + ++++ A+ G+++ + E    +  + D   W   + G   + R   A 
Sbjct: 598 HFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAE 657

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV-MPG 482
           E +     L  E   PD   L + L   N  G  DK + +   M+E+  V +PG
Sbjct: 658 EAIKRMMVLHPE--RPDLYVLISNLYTSN--GMWDKSLAIRRWMQEKGLVKLPG 707



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 6/176 (3%)

Query: 331 ALELFQLMLREDIRPT---EFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
           A+ L   M R    P    +F LS  L + I      +G   H  AIK G  ++  V +S
Sbjct: 147 AVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVG-GADGFVMNS 205

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MYAK   ++ + ++F ++  R++VSW +++ G  QNG A++ L +F ++ ++ +PP 
Sbjct: 206 LVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPS 265

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
             T+A V+ AC+    + +G  +  ++ ++ G+M      A ++D+  + G+L  A
Sbjct: 266 EYTIATVITACSALFGLHQGRWMHGSVIKQ-GLMSNSFISAALLDMYVKCGELDHA 320


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 179/587 (30%), Positives = 318/587 (54%), Gaps = 8/587 (1%)

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           +A   L ++ L L  +  ++  + Q+  ++        N  L   +   + + A  +F +
Sbjct: 25  HAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNASLLFSQ 84

Query: 107 IPEPDVVSWNSMISGYASCGYS-DYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---H 162
           IP P+  ++N MI G  +     +  +E + +M+  G+RP+ FT+  +    ++     H
Sbjct: 85  IPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNH 144

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+  H  +++SGL     V  +SLI MY + G L  A  VF  + E D++SWNS+ISG  
Sbjct: 145 GQCAHSGVLKSGLCADGHVR-HSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYS 203

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             GY   A+  F  MR +G+ PDE T+  ++ AC  L +L  G  +    V+     NS 
Sbjct: 204 RMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSF 263

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V SA I ++ KC  L  + R+F+++ + D    N MI+ Y + G  + A+ LF  M    
Sbjct: 264 VGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESG 323

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           + P + TL  VLS+   I  ++ G    + A + G  ++  V+++L++MYAK GS+D + 
Sbjct: 324 VNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDAL 383

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVLLACNY 459
            +F  + +++ VSWN ++  L  +GR  E+L +F+ + +EG  + P+ I+   VL AC +
Sbjct: 384 RVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVH 443

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G VD+G  +F  M   +G++P  EH++C++DLL +AG + +A D    MP +P   +  
Sbjct: 444 AGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLG 503

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           ++L A     +V ++E V   +++++  +   Y + ++ +A   RW+   R++ +MR+ G
Sbjct: 504 ALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRG 563

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + K  GCSWI I+N+++ F+AG++ H   Q +  V+ LL  EM+ EG
Sbjct: 564 VTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEG 610



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 209/432 (48%), Gaps = 49/432 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    +  +  H  + K G  A  ++ +  + +YSR G      ++FDEI +K+ +SW
Sbjct: 136 CANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSW 195

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          NSMISGY+  GY+  A+ +F +M+  G  
Sbjct: 196 -------------------------------NSMISGYSRMGYAGDAVGLFGEMRDAGFE 224

Query: 145 PSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           P   T    L ++  AC        G  I G ++ + + L++ V G++LI MYGK G L 
Sbjct: 225 PDEMT----LVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFV-GSALIGMYGKCGDLS 279

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M + D+++WN++I+G   +G  + A+  F  MR SG +PD+ T+  V++AC 
Sbjct: 280 SARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACA 339

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  LD GK +   + + G  ++  V +A ID+++KC  L+D++R+FE + + +    N 
Sbjct: 340 SIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNA 399

Query: 318 MISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSMAI 373
           MIS    +G  + +L LF+ M +E   +RP + +   VLS+ +    V+ G Q F  M+ 
Sbjct: 400 MISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSS 459

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETL 432
             G        S ++++ A+ G +  + +   K+ +K D V     ++G  Q  R  +  
Sbjct: 460 SFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGA-LLGACQKRRNVDVS 518

Query: 433 DVFEELLEEGLP 444
           +    +L E  P
Sbjct: 519 ERVMHMLLEMEP 530



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 145/326 (44%), Gaps = 39/326 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C           I G + +   + ++++G+  + +Y + G      ++FD + +K+
Sbjct: 233 ILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKD 292

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ++W                               N+MI+GYA  G SD A+ +FS M+ 
Sbjct: 293 VVTW-------------------------------NAMITGYAQNGVSDEAIILFSGMRE 321

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P   T   +LS  +S      GK +       GL  +++ +  +LIDMY K G L 
Sbjct: 322 SGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQ-NDIYVSTALIDMYAKCGSLD 380

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISIVINA 255
            A  VF +M + + +SWN++IS     G  + +L  F  M   G    P++ +   V++A
Sbjct: 381 DALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSA 440

Query: 256 CTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYA 313
           C     +D+G+Q+F L S   G +      S  +DL ++   + ++    E++ ++ D  
Sbjct: 441 CVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEV 500

Query: 314 VINVMISTYGRYGFGEVALELFQLML 339
           V+  ++    +    +V+  +  ++L
Sbjct: 501 VLGALLGACQKRRNVDVSERVMHMLL 526



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 74/307 (24%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S ++++ VN   ++    ++  C S  + DF K +  +  + G     Y+    +D+Y++
Sbjct: 317 SGMRESGVNPDKITLVG-VLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAK 375

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G+ DD L++F+++PQKN +S                               WN+MIS  
Sbjct: 376 CGSLDDALRVFEDMPQKNEVS-------------------------------WNAMISAL 404

Query: 123 ASCGYSDYALEMFSKMQLQG--VRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSL 177
           A  G    +L +F +M  +G  VRP+  +F  +LS    A     G+Q+   M  S   +
Sbjct: 405 AFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLV 464

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
             +   + ++D+  + G ++ A+     M E                             
Sbjct: 465 PKIEHHSCMVDLLARAGHVHEAWDFIEKMPE----------------------------- 495

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL-SNSIVLSATIDLFSKCNR 296
                 PDE  +  ++ AC K RN+D  ++V  + +++  L S + ++S+ I  F+   R
Sbjct: 496 -----KPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKI--FANMKR 548

Query: 297 LEDSVRL 303
            +DS R+
Sbjct: 549 WDDSARM 555


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 191/641 (29%), Positives = 312/641 (48%), Gaps = 47/641 (7%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFD---------------FAKTIHGHLFKLG 45
           ++ Y+  A+ N+A + + +  +D  L    F                F + +HG   K G
Sbjct: 122 IAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSG 181

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
                ++ +  +D+Y + G ++    +F+ +  +N +SW   + GL+ +      L  F 
Sbjct: 182 LINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFS 241

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-GK 164
           E+       W S +      GY  +                 F  ++  S  S   H GK
Sbjct: 242 EM-------WRSKV------GYDSHT----------------FAVALKASAESGLLHYGK 272

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
            IH   I+ G + +  V+ N+L  MY K     Y   +F  M   D++SW +LI      
Sbjct: 273 AIHAQTIKQGFNETAYVV-NTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQM 331

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G  E ALD F  MR S  SP+EYT + VI+AC  L     G+Q+   ++++G +    V 
Sbjct: 332 GDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVS 391

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           ++ I L+SKC  L+++  +F+ + R D    + +IS Y +    + A      M RE  +
Sbjct: 392 NSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPK 451

Query: 345 PTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P EF L+ VLS    +  +E G Q H+ A+  G D   +V S+L+ MY+++G++  +++I
Sbjct: 452 PNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKI 511

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  +   D+VSW  ++ G  ++G + E + +FE +   GL PD +T   +L ACN+ G V
Sbjct: 512 FDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLV 571

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
           D G   +  M  EY + P +EHY CIIDLLC+AG+L +A  +   MPF     +W ++LR
Sbjct: 572 DLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLR 631

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
           A   +GD+      AE+M+ L   S   +  L   Y+  GR E    V+K+M+  G+ K 
Sbjct: 632 ACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKE 691

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
            G SWI   +++ TF AG   H   ++I  +L LL   + D
Sbjct: 692 PGWSWINSNDQLNTFVAGVQSHPLSKQITTILELLRTSIGD 732



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 238/467 (50%), Gaps = 20/467 (4%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGV 143
           N  L+ L+K   +  A  +F+++   D +SW ++I+GY +   S+ AL +FS M +  G+
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 144 RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +   F  S+ L   +   +   G+ +HG  ++SGL +++V + ++L+DMY K+G      
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGL-INSVFVSSALVDMYMKVGKTEQGC 206

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF NM   +++SW ++I G  ++G     L  F  M  S    D +T ++ + A  +  
Sbjct: 207 SVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESG 266

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            L  GK + A ++K GF   + V++    ++SKC + +  +RLF ++   D      +I 
Sbjct: 267 LLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIM 326

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS 379
           TY + G  E AL+ F+ M + D+ P E+T + V+S+   +   + G Q H  A++ G   
Sbjct: 327 TYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVD 386

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              V++S++ +Y+K G +  ++ +F  + ++D++SW+TI+    Q   A E  +    + 
Sbjct: 387 ALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMS 446

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQ 495
            EG  P+   LA+VL  C     ++ G  V +     Y +  G +H    ++ +I +  +
Sbjct: 447 REGPKPNEFALASVLSVCGSMALLEPGKQVHA-----YALCIGLDHETMVHSALISMYSR 501

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYG----DVKLTENVA 538
           +G L +A  I  ++      S W +++   A +G     + L EN++
Sbjct: 502 SGNLQEASKIFDSIKNNDIVS-WTAMINGYAEHGYSQEAISLFENIS 547


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 186/578 (32%), Positives = 311/578 (53%), Gaps = 43/578 (7%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L+   ++D A  V D+ P P   SWNS+I  Y   G    +L ++ KM     +PS FTF
Sbjct: 37  LIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTF 96

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             +L   ST+ S   G+QIH  ++R G   S++ + NSLIDMY K   L  A   + +M 
Sbjct: 97  PFVLKACSTLGSVLEGEQIHTHVLRLGFG-SDLFVCNSLIDMYCKCFRLDSARNFWDDMG 155

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSM-----------RYSGY-------------- 242
             D +SWNS+ISG    G  E A D F  M             +GY              
Sbjct: 156 FRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFR 215

Query: 243 ---------SPDEYTISIVINACTKLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLF 291
                     P+  T+  +++AC+ L N + G+   VF    K+    N+I+++A ID++
Sbjct: 216 QMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPL--NTILVTALIDMY 273

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
           SKC  +E + R+F+ +   +    N +I+   + G  E A++L++ M  + ++P E TL 
Sbjct: 274 SKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLV 333

Query: 352 CVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            VLS+   +  +E G + H    ++G D N ++A++L++MYAK G ID +  IFVK  ++
Sbjct: 334 NVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEK 393

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D+  WN +++GL  +G   ++L VF +++  G+ P+ +T   VL ACN+ G V++G + F
Sbjct: 394 DVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQF 453

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
           S+M +++G+ P  EHYAC++DLL +AG L +A ++   M   P   IW ++L A  I+ +
Sbjct: 454 SSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRN 513

Query: 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIG 590
           ++L + ++E +M  Q P+     LL+  YA  GRW+ + RV++ +++  I K +GCSW+ 
Sbjct: 514 LELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVE 573

Query: 591 IKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           +   ++ F   +  H    +IY    +L   ++ EG V
Sbjct: 574 VDGVVHRFVVEDTTHLKSGEIYGAYEILVNHLKAEGYV 611



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 218/445 (48%), Gaps = 43/445 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  S    + IH H+ +LGF +  ++ N  +D+Y +    D     +D++  ++
Sbjct: 99  VLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRD 158

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
            +SWN  + G ++   ++ A  +F+E+P   +VV W +MI+GY   G     L +F +M 
Sbjct: 159 EVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQML 218

Query: 140 LQG--VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +    V+P+  T   LLS  S+ C+   G+ +   +  + + L N +L  +LIDMY K G
Sbjct: 219 VSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPL-NTILVTALIDMYSKCG 277

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A+ +F  +   ++ SWN++I+GC   G  E A+D +  M+     P+E T+  V++
Sbjct: 278 DVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLS 337

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  L+ G++V     + G   N I+ +A +D+++KC +++D+  +F +    D A+
Sbjct: 338 ACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVAL 397

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS-QFHSMA 372
            N MI     +G G  +L +F  M+R  ++P + T   VLS+      VE G  QF SMA
Sbjct: 398 WNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMA 457

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            K G        S  +E YA                          M+ L   GRA    
Sbjct: 458 DKHGL-------SPKLEHYA-------------------------CMVDLL--GRAGHLK 483

Query: 433 DVFEELLEEGLPPDRITLAAVLLAC 457
           + +E +    +PPD I   A+L AC
Sbjct: 484 EAYELVQNMLIPPDSIIWGALLSAC 508


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 184/624 (29%), Positives = 314/624 (50%), Gaps = 48/624 (7%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            K   SY   L+  C    S   A+ IH H+ K G +    +    +++Y++ G      
Sbjct: 70  KKIEPSYYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGA----- 124

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                     +  A K+FD +   +VV+W ++++GY      + 
Sbjct: 125 --------------------------MGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNI 158

Query: 131 ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           A+++F  M   G  PS +T  I L   S ++S   GKQ+H  +I+  L   +  +GN+L 
Sbjct: 159 AIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDY-DPSIGNALC 217

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            +Y KLG L  +  VF ++ E ++ISW ++IS C  +G   + L  F  M      P+E+
Sbjct: 218 SLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEF 277

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T++ V++ C     L  G+ V +LS+K+G+  N  + ++ + L+ KC  ++++  LF ++
Sbjct: 278 TLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKM 337

Query: 308 DRWDYAVINVMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
              +    N MIS + +              G  AL +F  + R   +P  FTLS VL+ 
Sbjct: 338 GSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKPDLFTLSSVLTV 397

Query: 357 IP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              +  +  G Q H+  IKSG+ S+ VV ++L+ MY+K GSI  +++ FV++  R L+SW
Sbjct: 398 CSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRTLISW 457

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
            T++ GL Q+G + + L +FE++   G+ P++IT   VL AC + G VD+ +  F  M++
Sbjct: 458 TTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSGMVDEALGYFEMMQK 517

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
           EY + P  +HY C+I +  +  +L +A DI + M F+P   IW  ++      G  +L  
Sbjct: 518 EYRIKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDFEPSEFIWSILIAGCRNLGKQELGF 577

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
             AE+++ L+L     Y  L   Y    RW+ + RV+K+M++  + K    SWI IK +I
Sbjct: 578 YAAEQLLKLKLKDTETYVTLLNMYISAKRWQDVSRVRKLMKEEKLGKFNDWSWITIKEKI 637

Query: 596 YTF-NAGELQHHGGQKIYLVLRLL 618
           ++F   G L  H  +   L+  LL
Sbjct: 638 HSFKTTGRLHPHNAKMYELLEELL 661


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 179/603 (29%), Positives = 313/603 (51%), Gaps = 33/603 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      D  +  HG + KLG     Y  N  +  Y++ G  +D  ++FD +P ++ ++W
Sbjct: 117 CARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTW 176

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNS--MISGYASCGYSDYALEMFSKMQLQG 142
           NI + G + +     AL  F E+ +   V  +S  +I+  A+C      LE FS MQ   
Sbjct: 177 NIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAAC-----CLE-FSSMQ--- 227

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
                               GK+IHG +IR GL   ++ +G SL+DMY K G + YA  V
Sbjct: 228 --------------------GKEIHGYVIRHGLE-QDIKVGTSLLDMYCKCGEVAYARSV 266

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M    +++WN +I G   +   + A D F  MR  G   +  T   ++ AC +  + 
Sbjct: 267 FATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESS 326

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+ V    V+  FL + ++ +A ++++ K  ++E S ++F ++        N MI+ Y
Sbjct: 327 LYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAY 386

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNA 381
                   A+ LF  +L + + P  FT+S V+ + + +  + H  Q HS  I  G+  N 
Sbjct: 387 MYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENT 446

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           ++ ++++ MYA++G + +S EIF K+  +D++SWNT++MG   +G+    L++F+E+   
Sbjct: 447 LIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYN 506

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           GL P+  T  +VL AC+  G VD+G + F+ M +EYG++P  EHY C+ DLL + G L +
Sbjct: 507 GLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLRE 566

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
            +    +MP  P   +W S+L AS    D+ + E  AER+  L+  +   Y +L+  YA 
Sbjct: 567 VLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYAD 626

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            GRWE + RV+ +M++ G+ +    S + + +   +F  G++ H   + I+ V  +L+ +
Sbjct: 627 AGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRK 686

Query: 622 MED 624
           +++
Sbjct: 687 IKE 689



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/530 (24%), Positives = 225/530 (42%), Gaps = 50/530 (9%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L     +D A++    +  PD    N MI G+A  G    AL  +  M   G RP  FTF
Sbjct: 51  LAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTF 110

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +++   + +     G+  HG +I+ GL   +V   NSL+  Y KLG++  A  VF  M 
Sbjct: 111 PVVVKCCARLGGLDEGRAAHGMVIKLGLE-HDVYTCNSLVAFYAKLGLVEDAERVFDGMP 169

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGK 266
             DI++WN ++ G  ++G G LAL  F  M  +     D   I   + AC    +  +GK
Sbjct: 170 VRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGK 229

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++    ++ G   +  V ++ +D++ KC  +  +  +F  +        N MI  Y    
Sbjct: 230 EIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNE 289

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVAS 385
             + A + F  M  E ++    T   +L++        +G   H   ++  F  + V+ +
Sbjct: 290 RPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLET 349

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+EMY K G ++SS +IF K+  + LVSWN ++          E + +F ELL + L P
Sbjct: 350 ALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYP 409

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D  T++ V+ A     FV  G L        Y +  G                       
Sbjct: 410 DYFTMSTVVPA-----FVLLGSLRHCRQIHSYIIGLG----------------------- 441

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
                +     I  ++L   A  GDV  +  + ++M+   + S   ++ +   YA+ G+ 
Sbjct: 442 -----YAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVIS---WNTMIMGYAIHGQG 493

Query: 566 EAIVRVKKVMRKNGINK--------VTGCSWIGIKNRIYTFNAGELQHHG 607
           +  + +   M+ NG+          +T CS  G+ +  +      LQ +G
Sbjct: 494 KTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYG 543



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C   +S  + +++HG++ +  F  H  L    L++Y + G  +   ++F +I  K
Sbjct: 315 NLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANK 374

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
             +SW                               N+MI+ Y        A+ +F ++ 
Sbjct: 375 TLVSW-------------------------------NNMIAAYMYKEMYTEAITLFLELL 403

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            Q + P  FT S ++     + S  H +QIH  +I  G +  N ++ N+++ MY + G +
Sbjct: 404 NQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYA-ENTLIMNAVLHMYARSGDV 462

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  M   D+ISWN++I G    G G+ AL+ F  M+Y+G  P+E T   V+ AC
Sbjct: 463 VASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC 522

Query: 257 TKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +D+G   F L ++  G +          DL  +   L + ++  E +
Sbjct: 523 SVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESM 574


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 178/617 (28%), Positives = 319/617 (51%), Gaps = 37/617 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    + A  + G L K GF     +    +D++ R G  D   + F +I +      
Sbjct: 172 CGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCR 231

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L G  KS  +D AL++F+ +PE DVVSWN M+S  +  G +  AL +   M  +GVR
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               T++  L+    +SS   GKQ+H  +IRS L   +  + ++++++Y K G    A  
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS-LPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++ + + +SW  LI G    G    +L+ F  MR    + D++ ++ +I+ C+   +
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD---------- 311
           +   +Q+ +LS+K G     ++ ++ I +++KC  L+++  +F  ++  D          
Sbjct: 411 MCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTA 470

Query: 312 YAVI---------------------NVMISTYGRYGFGEVALELFQLMLRE-DIRPTEFT 349
           Y+ +                     N M+  Y ++G  E  L+++  ML E D+ P   T
Sbjct: 471 YSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVT 530

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
              +      +   + G Q     +K G   +  V ++++ MY+K G I  + +IF  L 
Sbjct: 531 YVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLS 590

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           ++DLVSWN ++ G +Q+G   + +++F+++L++G  PD I+  AVL +C++ G V +G  
Sbjct: 591 RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKF 650

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F  +K ++ V PG EH++C++DLL +AG L +A ++   MP +P   +W ++L A   +
Sbjct: 651 YFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTH 710

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           G+ +L E  A+ + DL  P    Y LL + YA  G+     +V+K+MR  GI K  G SW
Sbjct: 711 GNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSW 770

Query: 589 IGIKNRIYTFNAGELQH 605
           + +KN+++ F A ++ H
Sbjct: 771 MEVKNKVHVFKAEDVSH 787



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 226/481 (46%), Gaps = 42/481 (8%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF-DEIPQKNCISWNICLRGLLKSDN 96
           HG L  +G  +  +L N  L  Y   G   D   L   +I + N I+ NI + G  K  +
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR-PSGFTFSILLS 155
           L  A ++F  +P  DV SWN+++SGY   G    A+E F  M+  G   P+ FTF   + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 156 TVSS-ACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA------------- 199
           +  +   H    Q+ G + + G    +  +   ++DM+ + G + +A             
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQ-GDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVF 229

Query: 200 ------------FGV------FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
                       +GV      F +M E D++SWN ++S    SG    AL     M   G
Sbjct: 230 CRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRG 289

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D  T +  + AC KL +L  GKQ+ A  ++     +  V SA ++L++KC   +++ 
Sbjct: 290 VRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEAR 349

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP- 360
           R+F  L   +     V+I  + +YG    +LELF  M  E +   +F L+ ++S      
Sbjct: 350 RVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRM 409

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +    Q HS+++KSG     V+++SL+ MYAK G++ ++  IF  +++RD+VSW  ++ 
Sbjct: 410 DMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLT 469

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
             +Q G   +  + F+ +    +    IT  A+L A    G  + G+ ++SAM  E  V+
Sbjct: 470 AYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVI 525

Query: 481 P 481
           P
Sbjct: 526 P 526



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 183/401 (45%), Gaps = 47/401 (11%)

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
           ++R  ++  NV+  N +++ Y KLG L  A  +F  M   D+ SWN+L+SG + SG    
Sbjct: 85  LLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLD 144

Query: 230 ALDQFYSMRYSGYS-PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
           A++ F SMR SG S P+ +T    + +C  L   +   Q+  L  K GF  +  V +  +
Sbjct: 145 AMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIV 204

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR-YGFGEVALELFQLMLREDI---- 343
           D+F +C  ++ + + F Q++R      N M++ Y + YG  + ALELF+ M   D+    
Sbjct: 205 DMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGV-DHALELFESMPERDVVSWN 263

Query: 344 -----------------------------RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374
                                          T +T S + +   +  +  G Q H+  I+
Sbjct: 264 MMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYT-SSLTACAKLSSLGWGKQLHAQVIR 322

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S    +  VAS+++E+YAK G    +  +F  L  R+ VSW  ++ G  Q G  +E+L++
Sbjct: 323 SLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLEL 382

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----I 490
           F ++  E +  D+  LA ++  C+     ++  +  +       +  G      I    I
Sbjct: 383 FNQMRAELMTVDQFALATIISGCS-----NRMDMCLARQLHSLSLKSGHTRAVVISNSLI 437

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            +  + G L  A  I S+M  +   S W  +L A +  G++
Sbjct: 438 SMYAKCGNLQNAESIFSSMEERDIVS-WTGMLTAYSQVGNI 477



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 154/323 (47%), Gaps = 14/323 (4%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S CS  +D CL       A+ +H    K G      + N  + +Y++ G   +   +F 
Sbjct: 402 ISGCSNRMDMCL-------ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFS 454

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            + +++ +SW   L    +  N+  A + FD +   +V++WN+M+  Y   G  +  L+M
Sbjct: 455 SMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKM 514

Query: 135 FSKMQLQ-GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +S M  +  V P   T+  L    + + +   G QI G  ++ GL L   V+ N++I MY
Sbjct: 515 YSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVM-NAVITMY 573

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  +F  +   D++SWN++I+G    G G+ A++ F  M   G  PD  +  
Sbjct: 574 SKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYV 633

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDR 309
            V+++C+    + +GK  F +  +   +S  +   S  +DL ++   L ++  L +++  
Sbjct: 634 AVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPM 693

Query: 310 WDYA-VINVMISTYGRYGFGEVA 331
              A V   ++S    +G  E+A
Sbjct: 694 KPTAEVWGALLSACKTHGNNELA 716



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 20/211 (9%)

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           + N +  + +M  YAK GS+  + E+F ++ +RD+ SWNT+M G  Q+GR  + ++ F  
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 438 LLEEGLP-PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           +   G   P+  T    + +C   G+ +  + +   +  ++G     +    I+D+  + 
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLT-KFGFQGDPDVATGIVDMFVRC 210

Query: 497 GQLGKAIDITSTMPFQ---PGCSIWESILRASA-IYG---DVKLTENVAERMMDLQLPSP 549
           G    A+D  S    Q   P      S+L   A  YG    ++L E++ ER         
Sbjct: 211 G----AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPER-------DV 259

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           + ++++  A +  GR    + V   M   G+
Sbjct: 260 VSWNMMVSALSQSGRAREALSVAVDMHNRGV 290


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 182/596 (30%), Positives = 311/596 (52%), Gaps = 32/596 (5%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +H H+ KLG      L N+ L +Y +    +DV ++FDE+P KN +SWN  + G+  
Sbjct: 92  GKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGV-- 149

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                    + G             F +M L+ + P+  T + L
Sbjct: 150 -------------------------VEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGL 184

Query: 154 LST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L     ++     +Q+H  +++SG   SN  +G++L+D Y K G++  A   F  +   D
Sbjct: 185 LRASIELNDVGICRQLHCFILKSGFD-SNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRD 243

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++ WN ++S    +G    A   F  MR  G   D +T + +IN+C  L +   GKQV  
Sbjct: 244 LVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHG 303

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L +++ F  + +V SA +D++SK   +ED+ + F+ +   +      MI  YG++G G+ 
Sbjct: 304 LIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKE 363

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+ L Q M+R    P E  L+ +LSS   +       Q H+  +++GF++   +A++L+ 
Sbjct: 364 AMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVS 423

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            Y+K GSI S+ + F  + + D++SW ++M     +G + E ++VFE++L   + PD++ 
Sbjct: 424 AYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVA 483

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              VL AC +GGFV +G+  F+ M   Y +MP  EHY CIIDLL +AG L +AI++ ++M
Sbjct: 484 FLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSM 543

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +P      + L A  ++ +V L    +E++  ++   P  YSL++  YA  G W  + 
Sbjct: 544 PVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVA 603

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           RV+K+MR+    KV GCSW+ I   ++TF + +  H    ++Y +L LL   ME++
Sbjct: 604 RVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEED 659



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-----RWD 311
            KL  L  GKQ+ A  +K+G  +   + +  + ++ KC    D  ++F+++       W+
Sbjct: 84  AKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWN 143

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHS 370
             +  V +    ++    +    F+ M+ E + P   TL+ +L +SI +  V    Q H 
Sbjct: 144 TLICGV-VEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHC 202

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +KSGFDSN  V S+L++ YAK G +D +   F ++  RDLV WN ++     NG   +
Sbjct: 203 FILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGK 262

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
              VF+ +  EG+  D  T  +++ +C   G
Sbjct: 263 AFGVFKLMRLEGVKGDNFTFTSMINSCGVLG 293



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I+ C    S    K +HG + +L F+    + +  +D+YS+    +D  + FD +  
Sbjct: 283 TSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIV 342

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +S                               W +MI GY   G    A+ +  +M
Sbjct: 343 KNIVS-------------------------------WTTMIVGYGQHGDGKEAMRLLQEM 371

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                 P     + +LS+   +S+     Q+H  ++ +G   + + + N+L+  Y K G 
Sbjct: 372 IRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFE-AFLSIANALVSAYSKCGS 430

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  AF  F ++ E DIISW SL+      G  +  ++ F  M +S   PD+     V++A
Sbjct: 431 IGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSA 490

Query: 256 CTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C     + +G   F L + V   + +S   +  IDL  +   L++++ L   +
Sbjct: 491 CAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSM 543


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 180/596 (30%), Positives = 306/596 (51%), Gaps = 36/596 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH    KLG + + ++G   +D YS  G           +    C               
Sbjct: 170 IHACACKLGHDRNAFVGTALIDAYSLCGA----------VCHARC--------------- 204

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                 VFD I   D V+W +M+S Y+     +YAL  FSKM++ G +P+ F  +  L  
Sbjct: 205 ------VFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKA 258

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +SSA  GK IHG  +++ L  +   +G +L+DMY K G +  A  +F  +   D+I 
Sbjct: 259 AVCLSSALLGKGIHGCSVKT-LYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVIL 317

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W+ LIS    S   E A + F  M  S   P+E+++S V+ AC  +  L+ G+Q+  L++
Sbjct: 318 WSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAI 377

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+G+ S   V +A +D+++KC  +E+S+ +F  L   +    N +I  Y + GF E AL 
Sbjct: 378 KLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALS 437

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M    +  T+ T S VL +      ++H  Q HS+  KS F+++ +V +SL++ YA
Sbjct: 438 VFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYA 497

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G I  + ++F  + + D+VSWN+I+     +GRA   L++F+ + +  +  + +T  +
Sbjct: 498 KCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVS 557

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L  C   G V++G+ +F++M  ++ + P  EHY CI+ LL +AG+L  A+     +P  
Sbjct: 558 LLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPST 617

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P   +W ++L +  ++ +V L    AE+++D++      Y LL+  YA  G  + +   +
Sbjct: 618 PSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWR 677

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           K MR  G+ K  G SW+ IK  ++ F+ G   H   + I  +L  L  +   EG V
Sbjct: 678 KSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYV 733



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/534 (27%), Positives = 261/534 (48%), Gaps = 48/534 (8%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAH--TYLGNRCLDLYSRFGTSDDVLQLFDE 75
           C++ + RC++       + +H  + + G  A   T+  N  L+ Y++ G           
Sbjct: 48  CARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGP---------- 97

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                L TA ++FD +PE + VS+ +++ GYA  G  + ALE+F
Sbjct: 98  ---------------------LATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELF 136

Query: 136 SKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            ++Q +G   + F  + +L    T+ +      IH    + G    N  +G +LID Y  
Sbjct: 137 RRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHD-RNAFVGTALIDAYSL 195

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G + +A  VF  +   D ++W +++S    +   E AL+ F  MR +G+ P+ + ++  
Sbjct: 196 CGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSA 255

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   L +   GK +   SVK  + +   V  A +D+++KC  +ED+  +FE +   D 
Sbjct: 256 LKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDV 315

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
            + + +IS Y +    E A E+F  M+R  + P EF+LS VL +   I  +E G Q H++
Sbjct: 316 ILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNL 375

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK G++S   V ++LM+MYAK  ++++S EIF  L   + VSWNTI++G  Q+G A + 
Sbjct: 376 AIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDA 435

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--I 489
           L VF E+    +   ++T ++VL AC     +   + + S +++        +   C  +
Sbjct: 436 LSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS---TFNNDTIVCNSL 492

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSI--WESILRASAIYGDVKLTENVAERM 541
           ID   + G +  A+ +  ++     C +  W SI+ A A++G       + +RM
Sbjct: 493 IDTYAKCGFIRDALKVFESI---VECDVVSWNSIISAYALHGRATNALELFDRM 543



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 164/334 (49%), Gaps = 37/334 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CLS  S    K IHG   K  ++   ++G   LD+Y++ G  +D   +F+ IP       
Sbjct: 261 CLS--SALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHD----- 313

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                     DV+ W+ +IS YA    ++ A EMF +M    V 
Sbjct: 314 --------------------------DVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVV 347

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ F+ S +L   ++      G+QIH   I+ G   S + +GN+L+DMY K   +  +  
Sbjct: 348 PNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYE-SELFVGNALMDMYAKCRNMENSLE 406

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F ++++ + +SWN++I G   SG+ E AL  F+ MR +     + T S V+ AC    +
Sbjct: 407 IFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSS 466

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +    Q+ +L  K  F +++IV ++ ID ++KC  + D++++FE +   D    N +IS 
Sbjct: 467 IKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISA 526

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           Y  +G    ALELF  M + DI+  + T   +LS
Sbjct: 527 YALHGRATNALELFDRMNKSDIKANDVTFVSLLS 560



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 35/254 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +    +  + IH    KLG+ +  ++GN  +D+Y++    ++ L++F  +  
Sbjct: 354 SGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQD 413

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +SWN  + G                               Y   G+++ AL +F +M
Sbjct: 414 ANEVSWNTIIVG-------------------------------YCQSGFAEDALSVFHEM 442

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   +  +  TFS +L   +  SS  H  QIH S+I      ++ ++ NSLID Y K G 
Sbjct: 443 RAAHMLSTQVTFSSVLRACANTSSIKHAVQIH-SLIEKSTFNNDTIVCNSLIDTYAKCGF 501

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF ++ E D++SWNS+IS     G    AL+ F  M  S    ++ T   +++ 
Sbjct: 502 IRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSV 561

Query: 256 CTKLRNLDKGKQVF 269
           C     +++G  +F
Sbjct: 562 CGSTGLVNQGLWLF 575


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 200/647 (30%), Positives = 330/647 (51%), Gaps = 58/647 (8%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ---LFDEIPQKNC--ISWNICLRG 90
           T+ G LF LGF+  +Y         S F  S +      L  ++ +  C  I  N  L  
Sbjct: 272 TVGGLLF-LGFSLSSYFYPPLXYFSSTFSDSMNYPNSEVLHAKLIKNGCVGIRGNHLLNL 330

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
             KS NL+ A K+F+EIP+ DV SW  +ISG+A  G S   L +F+KMQ QGV P+ FT 
Sbjct: 331 YAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTL 390

Query: 151 SILLSTVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           SI+L + SS  +    GK IHG ++R+GL L + VL NS++D Y K     YA  +F  M
Sbjct: 391 SIVLKSCSSNVNDSRIGKGIHGWILRNGLDL-DAVLNNSILDYYVKCRCFGYAEKLFGLM 449

Query: 207 EELDIISWN-------------------------------SLISGCFNSGYGELALDQFY 235
            E D +SWN                               ++I G   +G   +AL+  Y
Sbjct: 450 AEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLY 509

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M  +G + ++ T SI +   + L  L  GKQ+    +KVG L +  V ++ ID++ KC 
Sbjct: 510 KMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCG 569

Query: 296 RLEDSVRLFEQL----------DRWDYAVI-----NVMISTYGRYGFGEVALELFQLMLR 340
            +E +  +F+ L          +  D AV+     + M+S Y + G  E AL+ F  M+ 
Sbjct: 570 EMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMIC 629

Query: 341 EDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
             +   +FTL+ V+S+     V E G Q H    K G   +  + SS+++MY K GS++ 
Sbjct: 630 SQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLND 689

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           +  IF +   R++V W +++ G   +G+  E + +FE ++ EG+ P+ ++   VL AC++
Sbjct: 690 AWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSH 749

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G +++G   F  M+E YG+ PG EH+ C++DL  +AG+L +  +           S+W 
Sbjct: 750 AGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWR 809

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           S L +  ++ ++++   V +++++L+     PY L +   A   RWE   +++ +M++ G
Sbjct: 810 SFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRG 869

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + K    SWI +KN++++F  G+  H    KIY  L  L   +++ G
Sbjct: 870 VKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIG 916



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 197/392 (50%), Gaps = 27/392 (6%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSR---FGTSDDVLQLFDEIPQKNCISWNICLRG 90
            K IHG + + G +    L N  LD Y +   FG ++   +LF  + +K+ +SWNI +  
Sbjct: 407 GKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE---KLFGLMAEKDTVSWNIMMSS 463

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
            L+  ++  ++ +F ++P  D  SWN+MI G    G    ALE+  KM   G   +  TF
Sbjct: 464 YLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTF 523

Query: 151 SI---LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF---- 203
           SI   L S++S    GKQIH  +++ G+ L +  + NSLIDMY K G +  A  +F    
Sbjct: 524 SIALVLASSLSVLGLGKQIHTQVLKVGV-LDDGFVRNSLIDMYCKCGEMEKASVIFKHLP 582

Query: 204 -----LNMEE------LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
                +N EE      ++ +SW+S++SG   +G  E AL  F  M  S    D++T++ V
Sbjct: 583 QESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSV 642

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           ++AC     L+ G+QV     K+G   +  + S+ ID++ KC  L D+  +F Q    + 
Sbjct: 643 VSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNV 702

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHS 370
            +   MIS    +G G  A+ LF+LM+ E I P E +   VL++      +E G + F  
Sbjct: 703 VLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRL 762

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           M    G    A   + ++++Y + G ++   E
Sbjct: 763 MREVYGIRPGAEHFTCMVDLYGRAGRLNEIKE 794



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 136/277 (49%), Gaps = 21/277 (7%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S       K IH  + K+G     ++ N  +D+Y + G  +    +F  +PQ        
Sbjct: 532 SLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQ-------- 583

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                 +S  +++     D + E   VSW+SM+SGY   G  + AL+ FS M    V   
Sbjct: 584 ------ESSMMNSEESCDDAVVES--VSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVD 635

Query: 147 GFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT + ++S  +SA     G+Q+HG + + G  L +V LG+S+IDMY K G L  A+ +F
Sbjct: 636 KFTLTSVVSACASAGVLELGRQVHGYIQKIGHGL-DVFLGSSIIDMYVKCGSLNDAWLIF 694

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
              ++ +++ W S+ISGC   G G  A+  F  M   G +P+E +   V+ AC+    L+
Sbjct: 695 NQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLE 754

Query: 264 KGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLED 299
           +G + F L  +V G    +   +  +DL+ +  RL +
Sbjct: 755 EGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNE 791



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 56/228 (24%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +  V+K +L+    ++  C S    +  + +HG++ K+G     +LG+  +D+Y + G+ 
Sbjct: 631 QVEVDKFTLT---SVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSL 687

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           +D   +F++   +N                               VV W SMISG A  G
Sbjct: 688 NDAWLIFNQAKDRN-------------------------------VVLWTSMISGCALHG 716

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG---LSLSNVVLG 183
               A+ +F  M  +G+ P+  +F  +L+  S        H  ++  G     L   V G
Sbjct: 717 QGREAVRLFELMINEGITPNEVSFVGVLTACS--------HAGLLEEGCKYFRLMREVYG 768

Query: 184 --------NSLIDMYGKLGVLYYAFGVFLNMEELDIIS--WNSLISGC 221
                     ++D+YG+ G L      F++   +  +S  W S +S C
Sbjct: 769 IRPGAEHFTCMVDLYGRAGRL-NEIKEFIHNNAISKLSSVWRSFLSSC 815


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 286/526 (54%), Gaps = 34/526 (6%)

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           ++L G++  G   S  L  + + C GK++    +   +S  N+   N+++  Y KLG++ 
Sbjct: 85  LKLTGLKRPGTFLSNHLINMYAKC-GKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIK 143

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M E D++SWN+++      GY + AL  +   R  G   + ++ + V+  C 
Sbjct: 144 PARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCV 203

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           KL+ +   +QV    +  GFLSN ++ S+ +D + KC  + D+ +LF+++   D      
Sbjct: 204 KLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTT 263

Query: 318 M-------------------------------ISTYGRYGFGEVALELFQLMLREDIRPT 346
           M                               IS Y R G G  ALELF  M+   +RP 
Sbjct: 264 MVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPD 323

Query: 347 EFTLS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           +FT S C+ +   I  ++HG Q H+  ++  F  N +V S+L++MY+K GS+    ++F 
Sbjct: 324 QFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFD 383

Query: 406 KL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            + +K D+V WNTI+  L Q+G   E + + ++++  G  PD+IT   +L AC++ G V 
Sbjct: 384 LMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQ 443

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +G+  F +M  +YG++P +EHYAC+IDLL +AG   + +D    MP++P   +W ++L  
Sbjct: 444 QGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGV 503

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
             I+G ++L    AER+++L+  S   Y LL+  YA+ GRWE++ +V+++M +  + K  
Sbjct: 504 CRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKER 563

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYL 630
             SW+ I+N++++F+  +  H   ++IY VL  L  +ME++  +++
Sbjct: 564 AISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQMEEDASLFI 609



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 242/481 (50%), Gaps = 43/481 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           + L+  C   ++    K +H HL   G     T+L N  +++Y++ G   +  ++FD++ 
Sbjct: 63  ASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMS 122

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +N  SWN  L G  K   +  A K+FD++PE DVVSWN+M+  +A CGY D AL  +S+
Sbjct: 123 ARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSE 182

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            +  G++ +GF+F+ +L+    +      +Q+HG ++ +G  LSNVVL +S++D Y K G
Sbjct: 183 FRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGF-LSNVVLSSSVLDAYVKCG 241

Query: 195 VL------------------------YYAFG-------VFLNMEELDIISWNSLISGCFN 223
           ++                        Y  +G       +F+ M E + +SW +LISG   
Sbjct: 242 LMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYAR 301

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +G G  AL+ F  M      PD++T S  + AC  + +L  GKQ+ A  +++ F  N+IV
Sbjct: 302 NGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIV 361

Query: 284 LSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           +SA ID++SKC  L    ++F+ + ++ D  + N +IS   ++G GE A+++   M+R  
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG 421

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            +P + T   +L++      V+ G   F SM+   G   +    + L+++  + G  +  
Sbjct: 422 AKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEV 481

Query: 401 TEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
            +   K+  K D   WN ++     +G         E L+E  L P   T A VLL+  Y
Sbjct: 482 MDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIE--LEPQSST-AYVLLSSIY 538

Query: 460 G 460
            
Sbjct: 539 A 539


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 175/548 (31%), Positives = 300/548 (54%), Gaps = 7/548 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ +    K + +    K+FD++   +++SW +MISGY    +   A+++F +M   G +
Sbjct: 269 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 328

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P GF  + +L++  S      G+Q+H   I++ L  S+  + N LIDMY K  +L  A  
Sbjct: 329 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLE-SDEFVKNGLIDMYAKSNLLIDAKK 387

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E ++IS+N++I G  +      AL+ F+ MR   + P   T   ++     L  
Sbjct: 388 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 447

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+  KQ+  L +K G   +    SA ID++SKC+ ++D+  +FE+++  D  V N M   
Sbjct: 448 LELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 507

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y ++   E AL+L+  +     +P EFT + ++++   +  + HG QFH+  +K G D  
Sbjct: 508 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 567

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V ++L++MYAK GSI+ + ++F     RD+V WN+++    Q+G A E L +F E+++
Sbjct: 568 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 627

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           EG+ P+ +T  AVL AC++ G V+ G+  F++M   +G+ PG EHYAC++ LL ++G+L 
Sbjct: 628 EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLF 686

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A +    MP +P   +W S+L A  I G+V+L +  AE  +         Y LL+  +A
Sbjct: 687 EAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 746

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
            +G W  + +V+  M  + + K  G SWI + N++  F A +  H     I  VL +L  
Sbjct: 747 SKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD-IGSVLDILIQ 805

Query: 621 EMEDEGCV 628
            ++  G V
Sbjct: 806 HIKGAGYV 813



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 225/429 (52%), Gaps = 45/429 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG +   G  + T+L N                           I  N+C     KS
Sbjct: 47  KIIHGQIIVSGLQSDTFLAN---------------------------ILINVCS----KS 75

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSIL 153
           D +D A  VFD++P  ++++W+SM+S Y+  GYS+ AL +F  +Q + G  P+ F    +
Sbjct: 76  DRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEF----V 131

Query: 154 LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           L++V  AC        G Q+HG ++RSG    +V +G SLID Y K G +  A  VF  +
Sbjct: 132 LASVIRACTQLGVVEKGAQLHGFVVRSGFD-QDVYVGTSLIDFYSKNGNIEEARLVFDQL 190

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            E   ++W ++I+G    G   ++L+ F  MR +   PD Y +S V++AC+ L  L+ GK
Sbjct: 191 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 250

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  ++ G   +  V++  ID ++KCNR++   +LF+Q+   +      MIS Y +  
Sbjct: 251 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 310

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
           F   A++LF  M R   +P  F  + VL+S      +E G Q H+  IK+  +S+  V +
Sbjct: 311 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKN 370

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++MYAK+  +  + ++F  + +++++S+N ++ G +   + +E L++F E+     PP
Sbjct: 371 GLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPP 430

Query: 446 DRITLAAVL 454
             +T  ++L
Sbjct: 431 SLLTFVSLL 439



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/583 (24%), Positives = 258/583 (44%), Gaps = 58/583 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C      +    +HG + + GF+   Y+G   +D YS+ G  ++   +FD++ +
Sbjct: 133 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSE 192

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K  ++W   + G                               Y  CG S  +LE+F++M
Sbjct: 193 KTAVTWTTIIAG-------------------------------YTKCGRSAVSLELFAQM 221

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   V P  +    ++S+V SAC        GKQIH  ++R G  + +V + N LID Y 
Sbjct: 222 RETNVVPDRY----VVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM-DVSVVNVLIDFYT 276

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +     +F  M   +IISW ++ISG   + +   A+  F  M   G+ PD +  + 
Sbjct: 277 KCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTS 336

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+ +C     L++G+QV A ++K    S+  V +  ID+++K N L D+ ++F+ +   +
Sbjct: 337 VLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQN 396

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS 370
               N MI  Y        ALELF  M      P+  T   +L  S  +  +E   Q H 
Sbjct: 397 VISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHG 456

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + IK G   +    S+L+++Y+K   +  +  +F +++++D+V WN +  G TQ+    E
Sbjct: 457 LIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEE 516

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L ++  L      P+  T AA++ A +    +  G   F     + G+         ++
Sbjct: 517 ALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQ-FHNQLVKMGLDFCPFVTNALV 575

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSP 549
           D+  + G + +A  + ++  ++     W S++   A +G+ +    +   MM   + P+ 
Sbjct: 576 DMYAKCGSIEEARKMFNSSIWRD-VVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNY 634

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           + +  +  A +  GR E           +G+N        GIK
Sbjct: 635 VTFVAVLSACSHAGRVE-----------DGLNHFNSMPGFGIK 666



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 223/459 (48%), Gaps = 51/459 (11%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ ++  C S ++ +  + +H +  K    +  ++ N  +D+Y+                
Sbjct: 334 CTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYA---------------- 377

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                          KS+ L  A KVFD + E +V+S+N+MI GY+S      ALE+F +
Sbjct: 378 ---------------KSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHE 422

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+++   PS  TF  LL   +S       KQIHG +I+ G+SL ++  G++LID+Y K  
Sbjct: 423 MRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSL-DLFAGSALIDVYSKCS 481

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF  M E DI+ WN++  G       E AL  + ++++S   P+E+T + +I 
Sbjct: 482 YVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALIT 541

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A + L +L  G+Q     VK+G      V +A +D+++KC  +E++ ++F      D   
Sbjct: 542 AASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVC 601

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSM- 371
            N MIST+ ++G  E AL +F+ M++E I+P   T   VLS+      VE G + F+SM 
Sbjct: 602 WNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMP 661

Query: 372 --AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRA 428
              IK G +  A V S L     ++G +  + E   K+  +   + W +++       R 
Sbjct: 662 GFGIKPGTEHYACVVSLL----GRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC----RI 713

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
           A  +++ +   E  +  D     + +L  N   F  KGM
Sbjct: 714 AGNVELGKYAAEMAISTDPKDSGSYILLSNI--FASKGM 750



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 178/339 (52%), Gaps = 6/339 (1%)

Query: 138 MQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +Q+  +RP    F+ LL    + +   H K IHG +I SGL  S+  L N LI++  K  
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQ-SDTFLANILINVCSKSD 76

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVI 253
            +  A  VF  M   ++I+W+S++S     GY E AL  F  + R SG  P+E+ ++ VI
Sbjct: 77  RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 136

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            ACT+L  ++KG Q+    V+ GF  +  V ++ ID +SK   +E++  +F+QL      
Sbjct: 137 RACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAV 196

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
               +I+ Y + G   V+LELF  M   ++ P  + +S VLS+  +   +E G Q H+  
Sbjct: 197 TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYV 256

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           ++ G + +  V + L++ Y K   + +  ++F ++  ++++SW T++ G  QN    E +
Sbjct: 257 LRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAM 316

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            +F E+   G  PD     +VL +C     +++G  V +
Sbjct: 317 KLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHA 355



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 128/220 (58%), Gaps = 7/220 (3%)

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G  S++ + +  I++ SK +R++++  +F+++   +    + M+S Y + G+ E AL +F
Sbjct: 57  GLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVF 116

Query: 336 -QLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
             L  +    P EF L+ V+ +   +  VE G+Q H   ++SGFD +  V +SL++ Y+K
Sbjct: 117 VDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSK 176

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G+I+ +  +F +L ++  V+W TI+ G T+ GR+A +L++F ++ E  + PDR  +++V
Sbjct: 177 NGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSV 236

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           L AC+   F++ G  + +     Y +  G E    ++++L
Sbjct: 237 LSACSMLEFLEGGKQIHA-----YVLRRGTEMDVSVVNVL 271


>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Glycine max]
          Length = 681

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 321/659 (48%), Gaps = 76/659 (11%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H    K G  +  +  N+ + LYS  G   +  +LFDE+P  N  SWN  +   +K+ NL
Sbjct: 6   HVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNL 65

Query: 98  DTALKVFDEIPEPDVVSWNSMISGY-ASCGYSDYALEMFSKMQLQ----GVRPSGFTFSI 152
             A  +FD     D+VS+NS++S Y  S GY   AL++F++MQ      G+     T  +
Sbjct: 66  TQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNML 125

Query: 153 -LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-- 209
            L + +   C+GKQ+H  M+++   LS   L +SLIDMY K G    A  +F + +E+  
Sbjct: 126 NLAAKLRVLCYGKQMHSYMVKTANDLSKFAL-SSLIDMYSKCGCFQEACNLFGSCDEMVD 184

Query: 210 -------------------------------DIISWNSLISGCFNSGYGELALDQFYSMR 238
                                          D +SWN+LI+G   +GY E +L  F  M 
Sbjct: 185 LVSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMI 244

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            +G   +E+T++ V+NAC+ L+    GK V A  +K G+ SN  + S  +D +SKC  + 
Sbjct: 245 ENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIR 304

Query: 299 -------------------------------DSVRLFEQLDRWDYAVINVMISTYGRYGF 327
                                          ++ RLF+ L   +  V   + S Y +   
Sbjct: 305 YAELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQ 364

Query: 328 GEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVAS 385
            E   +LF +   +E + P    +  +L +  I   +  G Q H+  ++  F  +  + S
Sbjct: 365 CEAVFKLFREFRTKEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLS 424

Query: 386 SLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           SL++MY+K G++  + ++F  V    RD + +N I+ G   +G   + +++F+E+L + +
Sbjct: 425 SLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEMLNKSV 484

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +T  A+L AC + G V+ G   F +M E Y V+P   HYAC++D+  +A QL KA+
Sbjct: 485 KPDAVTFVALLSACRHRGLVELGEQFFMSM-EHYNVLPEIYHYACMVDMYGRANQLEKAV 543

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           +    +P +   +IW + L A  +  D  L +   E ++ ++  +   Y  L  AYA +G
Sbjct: 544 EFMRKIPIKIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYAAKG 603

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           +W+ + R++K MR +   K+ GCSWI ++N I+ F +G+  H   + +Y  L  L  ++
Sbjct: 604 KWDEMGRIRKKMRGHEAKKLAGCSWIYVENGIHVFTSGDRSHSKAEAVYSTLTCLNGKL 662


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 305/574 (53%), Gaps = 41/574 (7%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A +VF ++ E +VVSW ++I   A     + A E++ +M   G+ P+  TF  
Sbjct: 204 KCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVS 263

Query: 153 LLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL+   T  +   G++IH  +   GL  +++++ N+LI MY K   +  A  +F  M + 
Sbjct: 264 LLNSCNTPEALNRGRRIHSHISERGLE-TDMIVANALITMYCKCNSVQEAREIFDRMSKR 322

Query: 210 DIISWNSLISGCFNSGYGEL-ALDQFYS----MRYSGYSPDEYTISIVINACTKLRNLDK 264
           D+ISW+++I+G   SGY +  ++D+ +     MR  G  P++ T   ++ ACT    L++
Sbjct: 323 DVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQ 382

Query: 265 GKQVFALSVKVGF-----------------------------LSNSIVLSAT--IDLFSK 293
           G+Q+ A   KVGF                             ++N  V++ T  + ++ K
Sbjct: 383 GRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIK 442

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  L  + ++F ++   +    N+MI+ Y + G      EL   M  E  +P   T+  +
Sbjct: 443 CGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITI 502

Query: 354 LSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           L +   +  +E G   H+ A+K G +S+ VVA+SL+ MY+K G +  +  +F K+  RD 
Sbjct: 503 LEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDT 562

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           V+WN ++ G  Q+G   E +D+F+ +L+E + P+ ITL AV+ AC+  G V +G  +F  
Sbjct: 563 VAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRM 622

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M+E++ + P ++HY C++DLL +AG+L +A +   +MP +P  S+W ++L A   + +V+
Sbjct: 623 MQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQ 682

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           L E  A  +++L+      Y  L+  YA  GRW+   +V++VM   G+ K  G S I I 
Sbjct: 683 LAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEID 742

Query: 593 NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            RI+TF A +  H     I+  L  LT EM++ G
Sbjct: 743 GRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAG 776



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 143/586 (24%), Positives = 272/586 (46%), Gaps = 79/586 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C   + F+  K +H  L +LG     YLGN  ++ YS+F                 
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKF----------------- 104

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                         +++ +A +VF  +   DVV+W+SMI+ YA   +   A + F +M  
Sbjct: 105 --------------EDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             + P+  TF  +L   ++      G++IH  +   G+  ++V +  +LI MY K G + 
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGME-TDVAVATALITMYSKCGEIS 209

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGEL--ALDQFYSMRYSGYSPDEYTISIVINA 255
            A  VF  M E +++SW ++I    N+ + +L  A + +  M  +G SP+  T   ++N+
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQA--NAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C     L++G+++ +   + G  ++ IV +A I ++ KCN ++++  +F+++ + D    
Sbjct: 268 CNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISW 327

Query: 316 NVMISTYGRYGF--GEVALELFQL---MLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFH 369
           + MI+ Y + G+   E   E+FQL   M RE + P + T   +L +      +E G Q H
Sbjct: 328 SAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIH 387

Query: 370 SMAIKSGFD-------------------------------SNAVVASSLMEMYAKTGSID 398
           +   K GF+                                N V  +S + MY K G + 
Sbjct: 388 AELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLS 447

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           S+ ++F ++  R++VSWN ++ G  QNG   +  ++   +  EG  PDR+T+  +L AC 
Sbjct: 448 SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACG 507

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
               +++G LV  A   + G+         +I +  + GQ+ +A  +   M  +   + W
Sbjct: 508 ALAGLERGKLVH-AEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVA-W 565

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
            ++L     +GD     ++ +RM+  ++ P+ +  + +  A +  G
Sbjct: 566 NAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAG 611



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 234/494 (47%), Gaps = 17/494 (3%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLI 187
           A+++   ++ +G+  +  T+  ++   + A     GK +H  +   G+ + ++ LGNSLI
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEI-DIYLGNSLI 98

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           + Y K   +  A  VF  M   D+++W+S+I+    + +   A D F  M  +   P+  
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRI 158

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T   ++ AC     L+KG+++  +   +G  ++  V +A I ++SKC  +  +  +F ++
Sbjct: 159 TFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKM 218

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGS 366
              +      +I    ++     A EL++ ML+  I P   T   +L+S   P  +  G 
Sbjct: 219 TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR 278

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + HS   + G +++ +VA++L+ MY K  S+  + EIF ++ KRD++SW+ ++ G  Q+G
Sbjct: 279 RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSG 338

Query: 427 -RAAETLDVFEELLE----EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
            +  E++D   +LLE    EG+ P+++T  ++L AC   G +++G  + + +  + G   
Sbjct: 339 YKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS-KVGFEL 397

Query: 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
                  I ++  + G + +A  + S M        W S L      GD+   E V   M
Sbjct: 398 DRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456

Query: 542 MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI--NKVTGCSWIGIKNRIYTFN 599
               + S   ++L+   YA  G    +  +   M+  G   ++VT  + +     +    
Sbjct: 457 PTRNVVS---WNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLE 513

Query: 600 AGELQHHGGQKIYL 613
            G+L H    K+ L
Sbjct: 514 RGKLVHAEAVKLGL 527



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 58/435 (13%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDR-------------------CLSFKSFDFAKTIHGHL 41
           ++ Y +  + +K S+    QL++R                   C +  + +  + IH  L
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL 390

Query: 42  FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL 101
            K+GF     L     ++Y++ G+  +  Q+F ++  KN ++W   L   +K  +L +A 
Sbjct: 391 SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVF E+P  +VVSWN MI+GYA  G      E+ S M+ +G +P   T   +L    +  
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALA 510

Query: 162 ---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GK +H   ++ GL  S+ V+  SLI MY K G +  A  VF  M   D ++WN+++
Sbjct: 511 GLERGKLVHAEAVKLGLE-SDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAML 569

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G    G G  A+D F  M     SP+E T++ VI+AC++   + +G+++F +       
Sbjct: 570 AGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRM------- 622

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
                             +++  ++  +   +       M+   GR G  + A E  Q M
Sbjct: 623 ------------------MQEDFKMTPRKQHY-----GCMVDLLGRAGRLQEAEEFIQSM 659

Query: 339 LRE-DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E DI      L    S   +   E  +  H + ++  +   A V  +L  +YA+ G  
Sbjct: 660 PCEPDISVWHALLGACKSHNNVQLAERAAH-HILELEPSY---ASVYITLSNIYAQAGRW 715

Query: 398 DSSTEIFVKLDKRDL 412
           D ST++   +D R L
Sbjct: 716 DDSTKVRRVMDDRGL 730


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 175/603 (29%), Positives = 314/603 (52%), Gaps = 37/603 (6%)

Query: 31   FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
             +  K +HG   K G ++   + N  +++YS+ G                C  +      
Sbjct: 920  LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG----------------CAYF------ 957

Query: 91   LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                     A +VF+++   D++SWNSMIS  A     + ++ +F  +  +G++P  FT 
Sbjct: 958  ---------AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTL 1008

Query: 151  SILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + +L   SS   G    +QIH   +++G ++++  +  +LID+Y K G +  A  +F N 
Sbjct: 1009 ASVLRACSSLIDGLNISRQIHVHALKTG-NIADSFVATTLIDVYSKSGKMEEAEFLFQNK 1067

Query: 207  EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            ++LD+  WN+++ G      G+ AL+ F  +  SG   D+ T++    AC  L  LD+GK
Sbjct: 1068 DDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGK 1127

Query: 267  QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            Q+ A ++K GF S+  V S  +D++ KC  + ++  +F  +   D      MIS     G
Sbjct: 1128 QIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNG 1187

Query: 327  FGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
              + AL ++  M +  + P E+T + ++ +S  +  +E G Q H+  IK    S+  V +
Sbjct: 1188 NEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGT 1247

Query: 386  SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            SL++MYAK G+I+ +  +F K++ R++  WN +++GL Q+G A E +++F+ +   G+ P
Sbjct: 1248 SLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEP 1307

Query: 446  DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            DR++   +L AC++ G   +      +M  +YG+ P  EHY+C++D L +AG + +A  +
Sbjct: 1308 DRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKV 1367

Query: 506  TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              TMPF+   SI  ++L A  I GDV+  + VA R+  L+      Y LL+  YA   RW
Sbjct: 1368 IETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRW 1427

Query: 566  EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            + +   +K+M++  + K  G SWI +KN ++ F   +  H     IY  +  +   + ++
Sbjct: 1428 DDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIRED 1487

Query: 626  GCV 628
            G V
Sbjct: 1488 GYV 1490



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/570 (26%), Positives = 279/570 (48%), Gaps = 59/570 (10%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            CL+      A+ +HG+  K+G     ++    +++YS+ G   D   LFD + +++ + W
Sbjct: 737  CLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLW 796

Query: 85   NICLRGLLKSDNLDTALKVFDEI------PE----------------------------- 109
            N+ L+G ++      A ++F E       P+                             
Sbjct: 797  NMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAY 856

Query: 110  ----------PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
                      PDV  WN  +S     G +  A+E F  M    +     T  ++L+ V+ 
Sbjct: 857  AAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAG 916

Query: 160  ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                  GKQ+HG  ++SGL  S+V + NSL++MY K+G  Y+A  VF +M+ LD+ISWNS
Sbjct: 917  TDDLELGKQVHGIAVKSGLD-SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNS 975

Query: 217  LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN-LDKGKQVFALSVKV 275
            +IS C  S   E +++ F  + + G  PD +T++ V+ AC+ L + L+  +Q+   ++K 
Sbjct: 976  MISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKT 1035

Query: 276  GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
            G +++S V +  ID++SK  ++E++  LF+  D  D A  N M+  Y     G+ ALELF
Sbjct: 1036 GNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELF 1095

Query: 336  QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             L+ +   +  + TL+    +   +  ++ G Q H+ AIK+GFDS+  V S +++MY K 
Sbjct: 1096 SLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKC 1155

Query: 395  GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            G + ++  +F  +   D V+W +++ G   NG   + L ++  + +  + PD  T A ++
Sbjct: 1156 GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI 1215

Query: 455  LACNYGGFVDKG-MLVFSAMKEEYGVMP--GEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
             A +    +++G  L  + +K +    P  G      ++D+  + G +  A  +   M  
Sbjct: 1216 KASSCVTALEQGRQLHANVIKLDCVSDPFVG----TSLVDMYAKCGNIEDAYRLFKKMNV 1271

Query: 512  QPGCSIWESILRASAIYGDVKLTENVAERM 541
            +   ++W ++L   A +G+ +   N+ + M
Sbjct: 1272 R-NIALWNAMLVGLAQHGNAEEAVNLFKSM 1300



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 202/427 (47%), Gaps = 52/427 (12%)

Query: 5    LKKAHVNKAS-LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
            LK  H   AS L  CS LID        + ++ IH H  K G  A +++    +D+YS+ 
Sbjct: 1001 LKPDHFTLASVLRACSSLID------GLNISRQIHVHALKTGNIADSFVATTLIDVYSKS 1054

Query: 64   GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
            G  ++   LF                     D+LD A              WN+M+ GY 
Sbjct: 1055 GKMEEAEFLFQ------------------NKDDLDLAC-------------WNAMMFGYI 1083

Query: 124  SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLS 176
                   ALE+FS +   G +       I L+T + AC        GKQIH   I++G  
Sbjct: 1084 IGNDGKKALELFSLIHKSGEKSD----QITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 1139

Query: 177  LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS 236
             S++ + + ++DMY K G +  A  VF  +   D ++W S+ISGC ++G  + AL  ++ 
Sbjct: 1140 -SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHR 1198

Query: 237  MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
            MR S   PDEYT + +I A + +  L++G+Q+ A  +K+  +S+  V ++ +D+++KC  
Sbjct: 1199 MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGN 1258

Query: 297  LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +ED+ RLF++++  + A+ N M+    ++G  E A+ LF+ M    I P   +   +LS+
Sbjct: 1259 IEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 1318

Query: 357  IPIPPV--EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                 +  E     HSM    G +      S L++   + G +  + ++   +  +   S
Sbjct: 1319 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 1378

Query: 415  WNTIMMG 421
             N  ++G
Sbjct: 1379 INRALLG 1385



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 191/379 (50%), Gaps = 43/379 (11%)

Query: 93   KSDNLDTALKVFDEIPEPDVVSWNSMISGYASC-----GYSDYALEMFSKMQLQGVRPSG 147
            K  +L +A +VFD  PE D+V+WN+++  YA+      G +   L +F  ++      + 
Sbjct: 668  KCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTR 727

Query: 148  FTFSILLS-TVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             T + +L   ++S C    + +HG  I+ GL   +V +  +L+++Y K G +  A  +F 
Sbjct: 728  MTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEW-DVFVSGALVNIYSKCGRMRDARLLFD 786

Query: 205  NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
             M E D++ WN ++ G    G  + A   F     SG  PDE+++ +++N  +++ N D+
Sbjct: 787  WMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-NWDE 845

Query: 265  GK----QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            GK    QV A + K+    ++       D+F    +L + +      D W          
Sbjct: 846  GKWLADQVQAYAAKLSLSDDN------PDVFCWNKKLSECLWAG---DNWG--------- 887

Query: 321  TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS 379
                      A+E F  M   +I     TL  VL+++     +E G Q H +A+KSG DS
Sbjct: 888  ----------AIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDS 937

Query: 380  NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
            +  VA+SL+ MY+K G    + E+F  +   DL+SWN+++    Q+    E++++F +LL
Sbjct: 938  DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 997

Query: 440  EEGLPPDRITLAAVLLACN 458
             EGL PD  TLA+VL AC+
Sbjct: 998  HEGLKPDHFTLASVLRACS 1016



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 8/201 (3%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK  H  ++ SG S  +  L N+L+ MY K G L  A  VF    E D+++WN+++ G +
Sbjct: 640 GKCTHARIVVSG-SAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAIL-GAY 697

Query: 223 ------NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
                 N G  +  L  F  +R S  S    T++ V+  C     L   + V   ++K+G
Sbjct: 698 AASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG 757

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              +  V  A ++++SKC R+ D+  LF+ +   D  + N+M+  Y + G  + A +LF 
Sbjct: 758 LEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFS 817

Query: 337 LMLREDIRPTEFTLSCVLSSI 357
              R  +RP EF++  +L+ +
Sbjct: 818 EFHRSGLRPDEFSVQLILNGV 838


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 190/646 (29%), Positives = 325/646 (50%), Gaps = 75/646 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQ 78
           LIDRC S +     K  H H+ + G  +  Y  ++   +   S F + +   ++FDEIPQ
Sbjct: 37  LIDRCSSLRQL---KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQ 93

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN--SMISGYASCGYSDYALEMFS 136
            N  +WN             T ++ +   P+P    W    M+S  + C           
Sbjct: 94  PNSFTWN-------------TLIRAYASGPDPVCSIWAFLDMVSSESQC----------- 129

Query: 137 KMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
                   P+ +TF  L+   + VSS   G+ +HG  I+S +  S+V + NSLI  Y   
Sbjct: 130 -------YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVG-SDVFVANSLIHCYFSC 181

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  VF  ++E D++SWNS+I+G    G  + AL+ F  M          T+  V+
Sbjct: 182 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 241

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD-- 311
           +AC K+R+L+ G++V +   +     N  + +A +D+++KC  +ED+ RLF+ ++  D  
Sbjct: 242 SACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 301

Query: 312 --------YAVI---------------------NVMISTYGRYGFGEVALELF-QLMLRE 341
                   YA+                      N +IS Y + G    AL +F +L L++
Sbjct: 302 TWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQK 361

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           +I+  + TL   LS+   +  +E G   HS   K+G   N  V S+L+ MY+K G ++ +
Sbjct: 362 NIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKA 421

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            E+F  ++KRD+  W+ ++ GL  +G  +E +D+F ++ E  + P+ +T   V  AC++ 
Sbjct: 422 REVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 481

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G VD+   +F  M+  YG++P ++HYACI+D+L ++G L KA+     MP  P  S+W +
Sbjct: 482 GLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGA 541

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L A  I+ ++ L E    R+++L+  +   + LL+  YA  G+W+ +  ++K MR  G+
Sbjct: 542 LLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGL 601

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            K  GCS I I   I+ F +G+  H   +K+Y  L  +  +++  G
Sbjct: 602 KKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNG 647



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 160/304 (52%), Gaps = 12/304 (3%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           KAS      ++  C   +  +F + +  ++ +   N +  L N  LD+Y++ G+ +D  +
Sbjct: 231 KASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 290

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LFD + +K+ ++W   L G   S++ + A +V + +P+ D+V+WN++IS Y   G  + A
Sbjct: 291 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEA 350

Query: 132 LEMFSKMQLQ-GVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGN 184
           L +F ++QLQ  ++ +  T   L+ST+S+         G+ IH  + ++G+ + N  + +
Sbjct: 351 LLVFHELQLQKNIKLNQIT---LVSTLSACAQVGALELGRWIHSYIKKNGIKM-NFYVTS 406

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +LI MY K G L  A  VF ++E+ D+  W+++I G    G G  A+D FY M+ +   P
Sbjct: 407 ALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKP 466

Query: 245 DEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           +  T + V  AC+    +D+ + +F  +    G +      +  +D+  +   LE +V+ 
Sbjct: 467 NGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKF 526

Query: 304 FEQL 307
            E +
Sbjct: 527 IEAM 530


>gi|326506094|dbj|BAJ91286.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 625

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 185/621 (29%), Positives = 316/621 (50%), Gaps = 26/621 (4%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +H  L K G++   Y  N  L  Y+R G   D   L D +P    +S+N  L G   
Sbjct: 10  ARKLHATLLKSGYHGDAYRCNLVLRAYARGGALADARGLLDLMPSPTLVSYNTVLSGYAS 69

Query: 94  SDN---LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           S     LD AL + D +PE D  SWN+ ISG A  G +  AL  F +M    + P  FT+
Sbjct: 70  SSTPGLLDAALCLLDAMPERDSWSWNTAISGLARAGRTRDALRRFLQMTHTALVPDAFTY 129

Query: 151 SILLSTVSSAC-----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           SI    VS  C       +Q+H   +++G+  ++  +G   I +Y +LG++  A  VF  
Sbjct: 130 SI----VSPCCGVDLGSARQVHARAVKAGV-FADACVGTGFIKLYAELGLMEDAGKVFDC 184

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D++SWN L+     SG     + +F SM   G  PDE+T + V+N   +L    + 
Sbjct: 185 MPLRDLMSWNVLLDCGVRSGEAGSCMKEFLSMTGCGVQPDEFTFATVLNGLAELSAGLEA 244

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            QV ++ +K G+L +  + ++ +DL+ +C  ++ + +LF+ +   D      +IS     
Sbjct: 245 MQVHSIILKSGYLKDLFLCNSLLDLYGRCGYIDLAKKLFDAMLEKDVVSWTAVISGLAAC 304

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G+   A ++F+ ML+  + P  FT   ++SS   +  +  G Q H++ +K G +   ++A
Sbjct: 305 GYQADAFDIFRQMLKAAMLPNSFTFGSIVSSCADVNDLGSGRQCHALVVKHGLELVPIIA 364

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE---E 441
           S  ++MY+K   +D +  +F  + +RD++SWN ++ GL QNG++A +L++++E+ +   E
Sbjct: 365 SCFVDMYSKCAKMDDAIRMFEIMPQRDIISWNAMICGLAQNGQSARSLELYDEMTQLHYE 424

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
            + P+ +T   VL AC++ G V KG   F+ M  ++ + P  EHY C+IDL  +AG L +
Sbjct: 425 SVTPNSVTFVGVLSACSHAGAVQKGCSYFTQMVNDFHIEPISEHYTCLIDLFARAGWLDE 484

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A +I S +PF+    I   +L     YG++ + +  A+R++     +     LL+  Y  
Sbjct: 485 AEEIISNVPFKHDAVILGILLNGCRKYGNLDMAKRFAKRLLVNNPDNASAIFLLSNMYIA 544

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
              W    +++     +G +KV G SWI +  ++  F AG       ++IY VL+ L   
Sbjct: 545 NEEWSDASKLRDAAISSGTHKVMGNSWIDVGGQVQCFRAGSSPDAQFEQIYDVLQQLQLM 604

Query: 622 MEDEG---------CVYLECD 633
           M D           C Y+ C+
Sbjct: 605 MVDTDKLVTQINPLCTYINCE 625



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 50/238 (21%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         +  H  + K G      + +  +D+YS+    DD +++F+ +PQ++
Sbjct: 332 IVSSCADVNDLGSGRQCHALVVKHGLELVPIIASCFVDMYSKCAKMDDAIRMFEIMPQRD 391

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ISWN  + GL ++     +L+++DE+                            +++  
Sbjct: 392 IISWNAMICGLAQNGQSARSLELYDEM----------------------------TQLHY 423

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDM 189
           + V P+  TF  +LS  S        H   ++ G S    ++ +            LID+
Sbjct: 424 ESVTPNSVTFVGVLSACS--------HAGAVQKGCSYFTQMVNDFHIEPISEHYTCLIDL 475

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + + G L  A  +  N+  + D +    L++GC    YG L + + ++ R    +PD 
Sbjct: 476 FARAGWLDEAEEIISNVPFKHDAVILGILLNGC--RKYGNLDMAKRFAKRLLVNNPDN 531


>gi|449445246|ref|XP_004140384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 688

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 184/585 (31%), Positives = 299/585 (51%), Gaps = 17/585 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C         K I   +++    A T L N  +D++ + G+ +D +++F  I +
Sbjct: 107 SAVLKACGFVGDLGLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISR 166

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
               +WNI + G  K+  +  A K+F  +P P+VVSWNSMI+G+A  G S  ALE  S M
Sbjct: 167 ATTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNG-SQRALEFVSMM 225

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             + ++   FTF   L    SA HG     KQ+H  + + G   S   L ++LIDMY   
Sbjct: 226 HKRCIKLDDFTFPCALKI--SALHGLLFIGKQVHSYVTKLGYESSCFTL-SALIDMYSNC 282

Query: 194 GVLYYAFGVF-----LNMEELDIIS-WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
             L  A  +F      N    D ++ WNS++SG   +   + AL+    +  SG   D Y
Sbjct: 283 NDLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSY 342

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T    +  C  L +   G Q+  L V  G+  + +V S  +DL++K   ++D++ +F +L
Sbjct: 343 TFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRL 402

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
            R D    + +I    + G   +A  +F+ ML        F +S +L     +  +  G 
Sbjct: 403 PRKDIIAWSGLIMGCAQIGLNWLAFSMFKGMLELVNEIDHFVISTILKVCSNLASLRSGK 462

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H++ +KSG++      +SL++MY+K G I+ +  +F    ++D+VSW  I++G  QNG
Sbjct: 463 QVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFCCEQEKDIVSWTGIIVGCGQNG 522

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           +AAE +  F E++  G+ P+ IT   VL AC Y G V++   +F++MK  YG+ P  EHY
Sbjct: 523 KAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEPHLEHY 582

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL   G   +A  + + MPF+P  + W ++L A     D KL   VA+ +++   
Sbjct: 583 CCMVDLLASVGLPEEAEKLIANMPFEPNQTTWRTLLGACGTRNDTKLINRVADGLLEATP 642

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
             P  Y  L+ AYA  G W  + + ++  +K GI K  G SWI +
Sbjct: 643 NDPSTYVTLSNAYASLGMWHTLSKAREASKKFGIKK-AGLSWIEV 686



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 209/448 (46%), Gaps = 15/448 (3%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C + ++F     IH +L K G     +L N  + +Y+ F    D  ++FDE+  +N 
Sbjct: 10  LRHCATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAEKVFDEMTDRNI 69

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY-SDYALEMFSKMQL 140
           ++W   +           A+++++++P+ +  +     +   +CG+  D  L    + ++
Sbjct: 70  VTWTTMVSAFTDGGRPYEAIRLYNDMPKSETPNGYMYSAVLKACGFVGDLGLGKLIQERI 129

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
              +    T  IL++++      C G       +   +S +     N ++  Y K G++ 
Sbjct: 130 YEDKLQADT--ILMNSLMDMFVKC-GSLNDAVEVFHNISRATTTTWNIIVSGYSKAGLMV 186

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M   +++SWNS+I+G  ++G  + AL+    M       D++T    +    
Sbjct: 187 EAEKLFHCMPHPNVVSWNSMIAGFADNG-SQRALEFVSMMHKRCIKLDDFTFPCALKISA 245

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW------D 311
               L  GKQV +   K+G+ S+   LSA ID++S CN L ++V+LF+Q   +      +
Sbjct: 246 LHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNCNDLIEAVKLFDQHSSFNASISDN 305

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS 370
            A+ N M+S Y      + AL L   +         +T    L   I +     G Q H 
Sbjct: 306 LALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHG 365

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + +  G++ + VV S L+++YAK  +ID +  IF +L ++D+++W+ ++MG  Q G    
Sbjct: 366 LIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWL 425

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACN 458
              +F+ +LE     D   ++ +L  C+
Sbjct: 426 AFSMFKGMLELVNEIDHFVISTILKVCS 453



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+      S ++  C +  S    K +H    K G+    +     LD+YS+ G  +D 
Sbjct: 437 VNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDA 496

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASC 125
           L LF    +K+ +SW   + G  ++     A++ F E+      P+ +++  ++S     
Sbjct: 497 LTLFCCEQEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYA 556

Query: 126 GYSDYALEMFSKMQ-LQGVRP 145
           G  + A  +F+ M+ + G+ P
Sbjct: 557 GLVEEARSIFNSMKSVYGLEP 577


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 302/569 (53%), Gaps = 37/569 (6%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           NL  AL +F+ I +P+   WN+MI G +       A++ + +M L GV P+ +TF  LL 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 156 T---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN------- 205
           +   V +   GKQIHG +++ GL  S+  +  SLI+MY + G L YA  VF         
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLE-SDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 206 ---------------------MEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
                                 EE+   D +SWN++I+G   SG  E AL  F  M+ + 
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            +P+E T+  V++AC +  +L+ G  V +     G  SN  +++A ID++SKC  L+ + 
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LFE +   D    NVMI  Y      + AL LF+ M + ++ P + T   +L +   + 
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 361 PVEHGSQFHSMAIKSGFD-SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
            ++ G   H+   K     +N  + +SL++MYAK G+I+++ ++F  +  + L SWN ++
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMI 439

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            GL  +G A   L++F ++ +EG  PD IT   VL AC++ G V+ G   FS+M E+Y +
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDI 499

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  +HY C+IDLL +AG   +A  +   M  +P  +IW S+L A  ++G+V+L E  A+
Sbjct: 500 SPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAK 559

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
            + +L+  +P  Y LL+  YA  GRW+ + R++  +   G+ KV GCS I + + ++ F 
Sbjct: 560 HLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFL 619

Query: 600 AGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            G+  H   Q IY +L  +   +E  G V
Sbjct: 620 VGDKVHEQSQDIYKMLDEIDQLLEKAGHV 648



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 200/408 (49%), Gaps = 12/408 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    K IHGH+ KLG  +  ++    +++Y++ G       +F +   ++
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      LD A ++F+EIP  D VSWN+MI+GYA  G  + AL  F +M+ 
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS-----GLSLSNVVLGNSLIDMYGKLGV 195
             V P+  T   +LS  + +  G    G+ +RS     GL  SN+ L N+LIDMY K G 
Sbjct: 258 ANVAPNESTMVTVLSACAQS--GSLELGNWVRSWIEDHGLG-SNLRLVNALIDMYSKCGD 314

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  + E DIISWN +I G  +    + AL  F  M+ S   P++ T   ++ A
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           C  L  LD GK + A +  K   L+N+ + ++ ID+++KC  +E + ++F  +       
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMA 372
            N MIS    +G   +ALELF+ M  E   P + T   VLS+      VE G Q F SM 
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMV 494

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                         ++++  + G  D +  +   ++ K D   W +++
Sbjct: 495 EDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 205/426 (48%), Gaps = 38/426 (8%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM--YGKLGVLYYAFGVFLNMEELD 210
           LLST  S  + KQIH  +I++GL  +   L + LI+       G L YA  +F ++E+ +
Sbjct: 38  LLSTCKSFQNLKQIHSQIIKTGLHNTQFAL-SKLIEFCAISPFGNLSYALLLFESIEQPN 96

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
              WN++I G   S     A+D +  M   G  P+ YT   ++ +C K+    +GKQ+  
Sbjct: 97  QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHG 156

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNR-------------------------------LED 299
             +K+G  S+  V ++ I+++++                                  L+D
Sbjct: 157 HVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDD 216

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           + RLFE++   D    N MI+ Y + G  E AL  FQ M R ++ P E T+  VLS+   
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 360 P-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
              +E G+   S     G  SN  + ++L++MY+K G +D + ++F  + ++D++SWN +
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G +      E L +F ++ +  + P+ +T  ++L AC Y G +D G  + + + +++ 
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFL 396

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTM-PFQPGCSIWESILRASAIYGDVKLTENV 537
            +     +  +ID+  + G +  A  + + M P   G   W +++   A++G   +   +
Sbjct: 397 GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS--WNAMISGLAMHGHANMALEL 454

Query: 538 AERMMD 543
             +M D
Sbjct: 455 FRQMRD 460


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 305/593 (51%), Gaps = 37/593 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +    +  H  + KLG  A  Y  N  + LY++ G   D                
Sbjct: 130 CARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGD---------------- 173

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ--LQ- 141
                          A +VFD +P  D+VSWN+M+ GY S G    AL  F +M   LQ 
Sbjct: 174 ---------------AERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQV 218

Query: 142 GVRPSGFTFSILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           G    G   ++    + SA   G++IHG  IR GL   +V +G SL+DMY K G +++A 
Sbjct: 219 GHDSVGVIAALAACCLESALALGREIHGYAIRHGLE-QDVKVGTSLVDMYCKCGNVFFAE 277

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF  M    +++WN +I G   +     A D F  MR  G+  +  T   ++ AC +  
Sbjct: 278 NVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTE 337

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +   G+ V A  V+  FL + ++ +A ++++ K  ++E S ++F Q+        N MI+
Sbjct: 338 SSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIA 397

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDS 379
            Y      + A+ LF  +L + + P  FT++ V+ + + +  +    Q HS  +K G+  
Sbjct: 398 AYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGD 457

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           + ++ +++M MYA+ G+I +S EIF K+  +D++SWNTI++G   +G+    L++F+E+ 
Sbjct: 458 STLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMK 517

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
             G+ P+  T  +VL AC+  G   +G   F++M++EYG++P  EHY C+ DLL +AG+L
Sbjct: 518 CSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGEL 577

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            + +     MP  P   IW S+L AS    D+ + E  AER+  L+  +   Y +L+  Y
Sbjct: 578 REVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMY 637

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           A  GRWE + R++ +M++ G+ +    S + + N+  +F  G++ H   +KI+
Sbjct: 638 ADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIH 690



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 208/466 (44%), Gaps = 30/466 (6%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           + +  +D A   F  +  P     N MI G+A       AL  +  M   G RP  FTF 
Sbjct: 65  VAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFP 124

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           ++L   + A     G+  H ++I+ GL  ++V   NSL+ +Y KLG++  A  VF  M  
Sbjct: 125 VVLKCCARAGALGEGRAAHAAVIKLGLG-ADVYTANSLVALYAKLGLVGDAERVFDGMPA 183

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQ 267
            DI+SWN+++ G  ++G G LAL  F  M  +     D   +   + AC     L  G++
Sbjct: 184 RDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGRE 243

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +   +++ G   +  V ++ +D++ KC  +  +  +F ++        N MI   G Y  
Sbjct: 244 IHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMI---GGYAL 300

Query: 328 GEVALELFQLMLR--------EDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDS 379
            E  ++ F   ++        E +       +C  +   +     G   H+  ++  F  
Sbjct: 301 NERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSL----FGRSVHAYVVRRHFLP 356

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           + V+ ++L+EMY K G ++SS +IF ++  + LVSWN ++          E + +F ELL
Sbjct: 357 HVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELL 416

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID----LLCQ 495
            + L PD  T+  V+ A     FV  G +        Y V  G      I++    +  +
Sbjct: 417 NQPLYPDYFTMTTVVPA-----FVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYAR 471

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            G +  + +I   MP +   S W +I+   AI+G  K+   + + M
Sbjct: 472 CGNIVASREIFDKMPGKDVIS-WNTIIIGYAIHGQGKIALEMFDEM 516



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
            SLI  +   G +  A   F  +        N +I G  ++     AL  + +M  +G  
Sbjct: 58  KSLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGAR 117

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PD +T  +V+  C +   L +G+   A  +K+G  ++    ++ + L++K   + D+ R+
Sbjct: 118 PDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERV 177

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML------REDIRPTEFTLSCVLSSI 357
           F+ +   D    N M+  Y   G G +AL  F+ M        + +       +C L S 
Sbjct: 178 FDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLES- 236

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               +  G + H  AI+ G + +  V +SL++MY K G++  +  +F K+  R +V+WN 
Sbjct: 237 ---ALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNC 293

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++ G   N R  +  D F ++  +G   + +T   +L AC
Sbjct: 294 MIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTAC 333



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 36/292 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C   +S  F +++H ++ +  F  H  L    L++Y + G  +   ++F +I  K
Sbjct: 328 NLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDK 387

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
             +S                               WN+MI+ Y        A+ +F ++ 
Sbjct: 388 TLVS-------------------------------WNNMIAAYMYMEMYQEAIALFLELL 416

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            Q + P  FT + ++     + S    KQ+H  +++ G   S +++ N+++ MY + G +
Sbjct: 417 NQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIM-NAVMHMYARCGNI 475

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  M   D+ISWN++I G    G G++AL+ F  M+ SG  P+E T   V+ AC
Sbjct: 476 VASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTAC 535

Query: 257 TKLRNLDKG-KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +      +G K+  ++  + G +          DL  +   L + +R  E +
Sbjct: 536 SVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENM 587


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 302/573 (52%), Gaps = 42/573 (7%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ I EP+++ WN+M+ G+AS      ALEM+ +M   G  P+ ++F  LL
Sbjct: 12  DGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLL 71

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL--------------- 196
            + + +     G+QIH  +++ G  L   V   SLI MY + G L               
Sbjct: 72  KSCAKSKAFEEGRQIHAQVLKLGCGLDRYV-HTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 197 ---------YYAFG-------VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                    Y + G       VF  + E D++SWN++I+G   +G  E AL+ F  M  +
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFA----LSVKVGFLSNSIVLSATIDLFSKCNR 296
              PDE T+  V++AC +  +++ G+QV +         GF S+  +++A IDL+SKC  
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           +E +  LFE L   D    N +I  Y      + AL LFQ MLR    P + TL  VL +
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPA 310

Query: 357 IP-IPPVEHGSQFHSMAIKS--GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
              +  ++ G   H    K   G  +   + +SL++MYAK G I+++ ++F  +  R L 
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SWN ++ G   +GRA    D+F  +    + PD IT   +L AC++ G +D G  +F +M
Sbjct: 371 SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSM 430

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            ++Y + P  EHY C+IDLL  +G   +A ++  TMP +P   IW S+L+A   +G+++L
Sbjct: 431 TQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLEL 490

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E+ A++++ ++  +   Y LL+  YA  GRWE + RV+ V+   G+ KV GCS I + +
Sbjct: 491 AESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDS 550

Query: 594 RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            ++ F  G+  H   ++IY +L  +  ++E+ G
Sbjct: 551 VVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAG 583



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 179/349 (51%), Gaps = 18/349 (5%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F+  + IH  + KLG     Y+    + +Y+R G  +D  ++FD    ++
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S    + G     +  +A KVFDEI E DVVSWN+MI+GY   G  + ALE+F +M  
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHG----SMIRSGLSLSNVVLGNSLIDM 189
             VRP   T    L +V SAC        G+Q+H          G S S++ + N+LID+
Sbjct: 190 TNVRPDEGT----LVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFS-SSLKIVNALIDL 244

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  AFG+F  +   D++SWN+LI G  ++   + AL  F  M  SG  P++ T+
Sbjct: 245 YSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTL 304

Query: 250 SIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQL 307
             V+ AC  L  +D G+ +   +  K+  ++N   L ++ ID+++KC  +E + ++F  +
Sbjct: 305 LSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM 364

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
                +  N MI  +  +G    A +LF  M    + P + T   +LS+
Sbjct: 365 LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSA 413



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ +    + SWN+MI G+A  G ++ A ++FS+M+   V P   TF  
Sbjct: 350 KCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVG 409

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+QI  SM +       +     +ID+ G  G+   A  +   M  E
Sbjct: 410 LLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME 469

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  ELA
Sbjct: 470 PDGVIWCSLLKACKKHGNLELA 491


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/559 (30%), Positives = 312/559 (55%), Gaps = 25/559 (4%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  +++TA  VFD++P  D +SWN+MISGY   G     L +F  M    V P   T  
Sbjct: 253 VKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMT-- 310

Query: 152 ILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             +++V +AC        G+QIHG ++R+     +  + NSLI MY  +G++  A  VF 
Sbjct: 311 --MTSVITACELLGDDRLGRQIHGYVLRTEFG-RDPSIHNSLIPMYSSVGLIEEAETVFS 367

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
             E  D++SW ++ISG  N    + AL+ +  M   G  PDE TI+IV++AC+ L NLD 
Sbjct: 368 RTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDM 427

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF-----EQLDRWDYAVINVMI 319
           G  +  ++ + G +S SIV ++ ID+++KC  ++ ++ +F     + +  W   ++ + I
Sbjct: 428 GMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRI 487

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           +          AL  F+ M+R  ++P   TL CVLS+   I  +  G + H+ A+++G  
Sbjct: 488 NNRCFE-----ALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVS 541

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  + +++++MY + G ++ + + F  +D  ++ SWN ++ G  + G+ A   ++F+ +
Sbjct: 542 FDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRM 600

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           +E  + P+ +T  ++L AC+  G V +G+  F++MK +Y +MP  +HYAC++DLL ++G+
Sbjct: 601 VESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGK 660

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L +A +    MP +P  ++W ++L +  I+  V+L E  AE +      S   Y LL+  
Sbjct: 661 LEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNL 720

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  G+W+ +  V+K+MR+NG+    GCSW+ +K  ++ F + +  H   ++I  +L   
Sbjct: 721 YADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERF 780

Query: 619 TWEMEDEGCVYLECDKLDV 637
             +M++ G    E   +D+
Sbjct: 781 YKKMKEAGVEGPESSHMDI 799



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 137/426 (32%), Positives = 222/426 (52%), Gaps = 15/426 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L   ++  NL  A  VF  + + ++ SWN ++ GYA  G  D AL+++ +M   GV+
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TF  +L T   + +   G++IH  +IR G   S+V + N+LI MY K G +  A  
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFE-SDVDVVNALITMYVKCGDVNTARL 263

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M   D ISWN++ISG F +G     L  F  M      PD  T++ VI AC  L +
Sbjct: 264 VFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGD 323

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G+Q+    ++  F  +  + ++ I ++S    +E++  +F + +  D      MIS 
Sbjct: 324 DRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISG 383

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y      + ALE +++M  E I P E T++ VLS+   +  ++ G   H +A + G  S 
Sbjct: 384 YENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSY 443

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           ++VA+SL++MYAK   ID + EIF    ++++VSW +I++GL  N R  E L  F E++ 
Sbjct: 444 SIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR 503

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEY---GVMPGEEHYACIIDLLCQA 496
             L P+ +TL  VL AC   G +  G  + + A++      G MP       I+D+  + 
Sbjct: 504 R-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN-----AILDMYVRC 557

Query: 497 GQLGKA 502
           G++  A
Sbjct: 558 GRMEYA 563



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 190/360 (52%), Gaps = 7/360 (1%)

Query: 168 GSMIRSGLSLS----NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           GS + S +S+S    ++ LGN+L+ M+ + G L  A+ VF  ME+ ++ SWN L+ G   
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAK 184

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +G  + ALD ++ M + G  PD YT   V+  C  + NL +G+++    ++ GF S+  V
Sbjct: 185 AGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDV 244

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
           ++A I ++ KC  +  +  +F+++   D    N MIS Y   G     L LF +M++  +
Sbjct: 245 VNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPV 304

Query: 344 RPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P   T++ V+++  +   +  G Q H   +++ F  +  + +SL+ MY+  G I+ +  
Sbjct: 305 DPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAET 364

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F + + RDLVSW  ++ G        + L+ ++ +  EG+ PD IT+A VL AC+    
Sbjct: 365 VFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCN 424

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           +D GM +    K++ G++        +ID+  +   + KA++I  +   +     W SI+
Sbjct: 425 LDMGMNLHEVAKQK-GLVSYSIVANSLIDMYAKCKCIDKALEIFHST-LEKNIVSWTSII 482



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 149/325 (45%), Gaps = 43/325 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    + D    +H    + G  +++ + N  +D+Y++    D  L++F    +KN
Sbjct: 415 VLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKN 474

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW   + GL  ++    AL  F E+                                +
Sbjct: 475 IVSWTSIILGLRINNRCFEALFFFREM--------------------------------I 502

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + ++P+  T   +LS    + +   GK+IH   +R+G+S     + N+++DMY + G + 
Sbjct: 503 RRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDG-FMPNAILDMYVRCGRME 561

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA+  F +++  ++ SWN L++G    G G  A + F  M  S  SP+E T   ++ AC+
Sbjct: 562 YAWKQFFSVDH-EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACS 620

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVI 315
           +   + +G + F ++  K   + N    +  +DL  +  +LE++    +++  + D AV 
Sbjct: 621 RSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVW 680

Query: 316 NVMIST---YGRYGFGEVALE-LFQ 336
             ++++   +     GE+A E +FQ
Sbjct: 681 GALLNSCRIHHHVELGELAAENIFQ 705



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           + GS+ +S    S    +  + ++L+ M+ + G++  +  +F +++KR+L SWN ++ G 
Sbjct: 123 KEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGY 182

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            + G   E LD++  +L  G+ PD  T   VL  C
Sbjct: 183 AKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTC 217


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 178/603 (29%), Positives = 312/603 (51%), Gaps = 33/603 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      D  +  HG + KLG     Y  N  +  Y++ G  +D  ++FD +P ++ ++W
Sbjct: 117 CARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTW 176

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNS--MISGYASCGYSDYALEMFSKMQLQG 142
           N  + G + +     AL  F E+ +   V  +S  +I+  A+C      LE+ S MQ   
Sbjct: 177 NTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAAC-----CLEV-SSMQ--- 227

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
                               GK+IHG +IR GL   ++ +G SL+DMY K G + YA  V
Sbjct: 228 --------------------GKEIHGYVIRHGLE-QDIKVGTSLLDMYCKCGEVAYARSV 266

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M    +++WN +I G   +   + A D F  MR  G   +  T   ++ AC +  + 
Sbjct: 267 FATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESS 326

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+ V    V+  FL + ++ +A ++++ K  ++E S ++F ++        N MI+ Y
Sbjct: 327 LYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAY 386

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNA 381
                   A+ LF  +L + + P  FT+S V+ + + +  + H  Q HS  I  G+  N 
Sbjct: 387 MYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENT 446

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           ++ ++++ MYA++G + +S EIF K+  +D++SWNT++MG   +G+    L++F+E+   
Sbjct: 447 LIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYN 506

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           GL P+  T  +VL AC+  G VD+G + F+ M +EYG++P  EHY C+ DLL + G L +
Sbjct: 507 GLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLRE 566

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
            +    +MP  P   +W S+L AS    D+ + E  AER+  L+  +   Y +L+  YA 
Sbjct: 567 VLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYAD 626

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            GRWE + RV+ +M++ G+ +    S + + +   +F  G++ H   + I+ V  +L+ +
Sbjct: 627 AGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRK 686

Query: 622 MED 624
           +E+
Sbjct: 687 IEE 689



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 130/530 (24%), Positives = 226/530 (42%), Gaps = 50/530 (9%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L     +D A++    +  PD    N MI G+A  G    AL  +  M   G RP  FTF
Sbjct: 51  LAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTF 110

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +++   + +     G+  HG +I+ GL   +V   NSL+  Y KLG++  A  VF  M 
Sbjct: 111 PVVVKCCARLGGLDEGRAAHGMVIKLGLE-HDVYTCNSLVAFYAKLGLVEDAERVFDGMP 169

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGK 266
             DI++WN+++ G  ++G G LAL  F  M  +     D   I   + AC    +  +GK
Sbjct: 170 VRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGK 229

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++    ++ G   +  V ++ +D++ KC  +  +  +F  +        N MI  Y    
Sbjct: 230 EIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNE 289

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVAS 385
             + A + F  M  E ++    T   +L++        +G   H   ++  F  + V+ +
Sbjct: 290 RPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLET 349

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+EMY K G ++SS +IF K+  + LVSWN ++          E + +F ELL + L P
Sbjct: 350 ALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYP 409

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D  T++ V+ A     FV  G L        Y +  G                       
Sbjct: 410 DYFTMSTVVPA-----FVLLGSLRHCRQIHSYIIGLG----------------------- 441

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
                +     I  ++L   A  GDV  +  + ++M+   + S   ++ +   YA+ G+ 
Sbjct: 442 -----YAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVIS---WNTMIMGYAIHGQG 493

Query: 566 EAIVRVKKVMRKNGINK--------VTGCSWIGIKNRIYTFNAGELQHHG 607
           +  + +   M+ NG+          +T CS  G+ +  +      LQ +G
Sbjct: 494 KTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYG 543



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C   +S  + +++HG++ +  F  H  L    L++Y + G  +   ++F +I  K
Sbjct: 315 NLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANK 374

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
             +SW                               N+MI+ Y        A+ +F ++ 
Sbjct: 375 TLVSW-------------------------------NNMIAAYMYKEMYTEAITLFLELL 403

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            Q + P  FT S ++     + S  H +QIH  +I  G +  N ++ N+++ MY + G +
Sbjct: 404 NQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYA-ENTLIMNAVLHMYARSGDV 462

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  M   D+ISWN++I G    G G+ AL+ F  M+Y+G  P+E T   V+ AC
Sbjct: 463 VASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC 522

Query: 257 TKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +    +D+G   F L ++  G +          DL  +   L + ++  E +
Sbjct: 523 SVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESM 574


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/601 (30%), Positives = 304/601 (50%), Gaps = 45/601 (7%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            D  + +H  + K+G+  H Y G+  LD+Y+                             
Sbjct: 118 LDVGQQVHSLIVKMGYEEHVYAGSALLDMYA----------------------------- 148

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
             K + +  A  VF  IP  + VSWN++I+G+   G  D A  +   M+ +GVR    TF
Sbjct: 149 --KCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTF 206

Query: 151 SILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN-M 206
           S LL+ +      K   Q+H  +I+ G+   N V  N+ I  Y + G L  A  VF   +
Sbjct: 207 SPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVC-NATITSYSQCGSLEDAERVFDGAV 265

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D+++WNS+++        E A   F  M+  G+ PD YT + +I+AC+   + D GK
Sbjct: 266 GSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACS---HKDNGK 322

Query: 267 QVFALSVKVGFLSNSIVLSATIDLF--SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            +  L +K G      + +A I ++  S  N +ED++ +F  ++  D    N +++ + +
Sbjct: 323 SLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQ 382

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  E AL+LF  M    +    +  S VL S   +  ++ G Q H + +KSGF+SN  V
Sbjct: 383 TGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFV 442

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           ASSL+ MY+K G I+ + + F K  K   ++WN+IM    Q+G+    L +F ++ ++ +
Sbjct: 443 ASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKV 502

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D IT  A L AC++ G V++G  +  +M  +YG+ P  EHYAC +DL  +AG L +A 
Sbjct: 503 KMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAK 562

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +  +MPF P   +W+++L A    GD++L   VA  +++L+      Y +L+  Y    
Sbjct: 563 ALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSNMYGHLK 622

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RW+    + ++MR+  + KV G SWI +KN ++ F A +  H   ++IY +L  L   ME
Sbjct: 623 RWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDRCHSHFEEIYQILEQL---ME 679

Query: 624 D 624
           D
Sbjct: 680 D 680



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 201/427 (47%), Gaps = 38/427 (8%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H    KLG +A  Y  N  L  Y+R                        C  G      L
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTR------------------------CSSG-----GL 52

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
             A  +FDE+   D V+WN+MISGY + G    A E++  M+  G+ P  +TF  +L  V
Sbjct: 53  TFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGV 112

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + AC    G+Q+H  +++ G    +V  G++L+DMY K   +  AF VF  +   + +SW
Sbjct: 113 ACACRLDVGQQVHSLIVKMGYE-EHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSW 171

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N+LI+G    G  + A      M   G   D+ T S ++    + +      Q+    +K
Sbjct: 172 NALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIK 231

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAVINVMISTYGRYGFGEVALE 333
            G   ++ V +ATI  +S+C  LED+ R+F+  +   D    N M++ +  +   E A +
Sbjct: 232 HGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFK 291

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY-- 391
           LF  M +    P  +T + ++S+      ++G   H + IK G +    + ++++ MY  
Sbjct: 292 LFLDMQQFGFEPDIYTYTTIISACSHK--DNGKSLHGLVIKRGLEQLVPICNAVIAMYLE 349

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           + + S++ +  +F  ++ +D VSWN+I+ G +Q G +   L +F  +    +  D    +
Sbjct: 350 SSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFS 409

Query: 452 AVLLACN 458
           AVL +C+
Sbjct: 410 AVLRSCS 416



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 200/438 (45%), Gaps = 41/438 (9%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD-EIPQKNCISWNIC 87
           K +     +H  + K G      + N  +  YS+ G+ +D  ++FD  +  ++ ++WN  
Sbjct: 217 KFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSM 276

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L   L  D  +TA K+F                           L+M    Q  G  P  
Sbjct: 277 LAAFLAHDRKETAFKLF---------------------------LDM----QQFGFEPDI 305

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY--GKLGVLYYAFGVFLN 205
           +T++ ++S  S   +GK +HG +I+ GL    V + N++I MY       +  A  VF +
Sbjct: 306 YTYTTIISACSHKDNGKSLHGLVIKRGLE-QLVPICNAVIAMYLESSSNSMEDALNVFHS 364

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           ME  D +SWNS+++G   +G+ E AL  F  MR++    D Y  S V+ +C+ L  L  G
Sbjct: 365 MESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLG 424

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +Q+  L+VK GF SN  V S+ I ++SKC  +ED+ + FE+  +      N ++  Y ++
Sbjct: 425 QQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQH 484

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVV 383
           G G+VAL LF  M  + ++    T    L++   I  VE G     SMA   G       
Sbjct: 485 GQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEH 544

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
            +  ++++ + G +D +  +   +    D + W T++      G       V   LLE  
Sbjct: 545 YACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLE-- 602

Query: 443 LPPDRITLAAVLLACNYG 460
           L P+      V+L+  YG
Sbjct: 603 LEPEE-HCTYVILSNMYG 619



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 150/297 (50%), Gaps = 5/297 (1%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKL--GVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           H   I+ G S +++   N+++  Y +   G L +A  +F  M   D ++WN++ISG  NS
Sbjct: 22  HCQTIKLGRS-ADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNS 80

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G    A + + SM+  G  PD YT   ++        LD G+QV +L VK+G+  +    
Sbjct: 81  GSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAG 140

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           SA +D+++KC R+ D+  +F+ + R +    N +I+ +   G  + A  L + M  E +R
Sbjct: 141 SALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVR 200

Query: 345 PTEFTLSCVLSSIPIPPVEHGS-QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
             + T S +L+ +        + Q H   IK G   +  V ++ +  Y++ GS++ +  +
Sbjct: 201 LDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERV 260

Query: 404 FV-KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           F   +  RDLV+WN+++     + R      +F ++ + G  PD  T   ++ AC++
Sbjct: 261 FDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSH 317



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAK--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           H   IK G  ++    ++++  Y +  +G +  +  +F ++  RD V+WNT++ G   +G
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH- 485
                 ++++ +   GL PD  T  ++L        +D G  V S + +    M  EEH 
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVK----MGYEEHV 137

Query: 486 YA--CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
           YA   ++D+  +  ++  A  +   +P +   S W +++    + GD
Sbjct: 138 YAGSALLDMYAKCERVRDAFMVFKCIPRRNSVS-WNALIAGFVLEGD 183



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 35/216 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +    + IH    K GF ++ ++ +  + +YS+ G  +D  + F++  +
Sbjct: 409 SAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAK 468

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+W                               NS++  YA  G  D AL +F +M
Sbjct: 469 DSSITW-------------------------------NSIMFAYAQHGQGDVALGLFFQM 497

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + + V+    TF   L+  S       G+ +  SM         +      +D++G+ G 
Sbjct: 498 RDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGY 557

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           L  A  +  +M  + D + W +L+  C   G  ELA
Sbjct: 558 LDEAKALIESMPFDPDAMVWKTLLGACRACGDIELA 593


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 182/613 (29%), Positives = 313/613 (51%), Gaps = 38/613 (6%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C         + +H H  K    +   + N  + +YS+ G  DD   LF+ I  K  
Sbjct: 159 VRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDK-- 216

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                        D++SW S+I+G+A  G+   AL++F KM ++
Sbjct: 217 -----------------------------DLISWGSIIAGFAQQGFEMEALQVFRKMIVE 247

Query: 142 GVR-PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           G   P+ F F         V S  +G+QIHG  I+  L   ++ +G SL DMY +   L 
Sbjct: 248 GSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD-RDLYVGCSLSDMYARFKNLD 306

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  +E  D++SWNS+++     G    AL  F  MR SG  PD  T+  ++ AC 
Sbjct: 307 SARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACV 366

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L  G+ + +  VK+G   +  V ++ + ++++C+ L  ++ +F ++   D    N 
Sbjct: 367 GRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 426

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           +++   ++   E  L+LF L+ + +      +L+ VLS S  +   E   Q H+ A K+G
Sbjct: 427 ILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAG 486

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
              + +++++L++ YAK GS+D +  +F +  + RD+ SW+++++G  Q G A E LD+F
Sbjct: 487 LVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLF 546

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             +   G+ P+ +T   VL AC+  GFV++G   +S M+ EYG++P  EH +CI+DLL +
Sbjct: 547 SRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLAR 606

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L +A +    MPF+P   +W+++L AS ++ D+++ +  AE ++++       Y LL
Sbjct: 607 AGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLL 666

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
              YA  G W    R+KK MR +G+ K  G SW+ +K  +  F   +  H   ++IY +L
Sbjct: 667 CNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 726

Query: 616 RLLTWEMEDEGCV 628
            L+  EM   G V
Sbjct: 727 ELIGMEMIKAGYV 739



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 238/542 (43%), Gaps = 53/542 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFK-------LGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           + L+  C   +S    + +H HL              +T LGN  + +Y R    D    
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPD---- 103

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                      +A +VFDE+P  + VSW S+I+ +   G +  A
Sbjct: 104 ---------------------------SARQVFDEMPARNPVSWASVIAAHVQNGRAGDA 136

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGN 184
           L +FS M   G     F     L +   AC        G+Q+H   ++S    S++++ N
Sbjct: 137 LGLFSSMLRSGTAADQFA----LGSAVRACTELGDVGTGRQVHAHALKSERG-SDLIVQN 191

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YS 243
           +L+ MY K G++   F +F  +++ D+ISW S+I+G    G+   AL  F  M   G + 
Sbjct: 192 ALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHH 251

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+E+       AC  + + + G+Q+  LS+K     +  V  +  D++++   L+ +   
Sbjct: 252 PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVA 311

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPV 362
           F +++  D    N +++ Y   G    AL LF  M    +RP   T+  +L + +    +
Sbjct: 312 FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL 371

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            HG   HS  +K G D +  V +SL+ MYA+   + S+ ++F ++  +D+V+WN+I+   
Sbjct: 372 YHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTAC 431

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            Q+    E L +F  L +     DRI+L  VL A    G+ +    V  A   + G++  
Sbjct: 432 AQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH-AYAFKAGLVDD 490

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
                 +ID   + G L  A+ +   M        W S++   A +G  K   ++  RM 
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMR 550

Query: 543 DL 544
            L
Sbjct: 551 SL 552



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 39/293 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+   +    + IH +L KLG +    + N  L +Y+R       + +F EI  ++
Sbjct: 361 LLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD 420

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++WN  L    + ++ +  LK+F  +    P  D +S N+++S  A  GY     EM  
Sbjct: 421 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGY----FEMV- 475

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                      KQ+H    ++GL + + +L N+LID Y K G L
Sbjct: 476 ---------------------------KQVHAYAFKAGL-VDDRMLSNTLIDTYAKCGSL 507

Query: 197 YYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  +F  M    D+ SW+SLI G    GY + ALD F  MR  G  P+  T   V+ A
Sbjct: 508 DDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTA 567

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+++  +++G   ++ +  + G +      S  +DL ++  +L ++    +Q+
Sbjct: 568 CSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQM 620


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 296/535 (55%), Gaps = 8/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFD++P P V  WN++I GY+   +   AL M+SKMQL  V P  FTF  LL     
Sbjct: 72  ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGG 131

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEELDIISW 214
             H   G+ +H  + R G   ++V + N LI +Y K   L  A  VF  L + E  I+SW
Sbjct: 132 LSHLQMGRFVHAQVFRLGFE-ADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSW 190

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            +++S    +G    AL+ F  MR     PD   +  V+NA T L++L++G+ + A  +K
Sbjct: 191 TAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK 250

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G  +   +L +   +++KC ++  +  LF+++   +  + N MIS Y + GF + A++L
Sbjct: 251 MGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDL 310

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M+ +D+RP   +++  +S+   +  +E          +S +  +  ++S+L++M+AK
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAK 370

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            GS++ +  +F +   RD+V W+ +++G   +G+A E + ++  +  +G+ P+ +T   +
Sbjct: 371 CGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGL 430

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L+ACN+ G V +G   F+ M + + + P ++HYACIIDLL +AG L +A ++   MP QP
Sbjct: 431 LIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQP 489

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G ++W ++L A   +  V+L +  A+++  +   +   Y  L+  YA    W+ +  V+ 
Sbjct: 490 GVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            M++ G+NK  GCSW+ ++ R+  F  G+  H   ++I   +  +   +++ G V
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 170/328 (51%), Gaps = 5/328 (1%)

Query: 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           G+    F  S++ S+   A   +QIH  ++  GL  S  ++   LI      G + +A  
Sbjct: 17  GIHSDSFYASLIDSSTHKA-QLRQIHARLLVLGLQFSGFLI-TKLIHASSSYGDITFARQ 74

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++    +  WN++I G   + + + AL  +  M+ +  SPD +T   ++ AC  L +
Sbjct: 75  VFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSH 134

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMI 319
           L  G+ V A   ++GF ++  V +  I L++KC RL  +  +FE L   +  +++   ++
Sbjct: 135 LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIV 194

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           S Y + G    ALE+F  M + D++P    L  VL++   +  +E G   H+  +K G +
Sbjct: 195 SAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLE 254

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +   +  SL  MYAK G + ++  +F K+   +L+ WN ++ G  +NG A + +D+F E+
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEM 314

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + + + PD I++ + + AC   G +++ 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQA 342



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 195/410 (47%), Gaps = 41/410 (10%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M S ++ A V+  S ++   L+  C         + +H  +F+LGF A  ++ N  + LY
Sbjct: 106 MYSKMQLARVSPDSFTF-PHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALY 164

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD--VVSWNSM 118
           ++                        C R       L  A  VF+ +P P+  +VSW ++
Sbjct: 165 AK------------------------CRR-------LGCARTVFEGLPLPERTIVSWTAI 193

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGL 175
           +S YA  G    ALE+FS+M+   V+P       +L+    +     G+ IH S+++ GL
Sbjct: 194 VSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGL 253

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
                +L  SL  MY K G +  A  +F  M+  ++I WN++ISG   +G+ + A+D F+
Sbjct: 254 ETEPDLL-ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFH 312

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M      PD  +I+  I+AC ++ +L++ + +     +  +  +  + SA ID+F+KC 
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCG 372

Query: 296 RLEDSVRLFEQ-LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCV 353
            +E +  +F++ LDR D  V + MI  YG +G    A+ L++ M R+ + P + T L  +
Sbjct: 373 SVECARSVFDRTLDR-DVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLL 431

Query: 354 LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           ++      V  G  F +       +      + ++++  + G +D + E+
Sbjct: 432 IACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEV 481



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 4/216 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   + TA  +FD++  P+++ WN+MISGYA  G++  A+++F +M  + VRP   + + 
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITS 328

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +S    V S    + +   + RS     +V + ++LIDM+ K G +  A  VF    + 
Sbjct: 329 AISACAQVGSLEQARWMDEYVSRSDYR-DDVFISSALIDMFAKCGSVECARSVFDRTLDR 387

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ W+++I G    G    A+  + +M   G  P++ T   ++ AC     + +G   F
Sbjct: 388 DVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFF 447

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
                          +  IDL  +   L+ +  + +
Sbjct: 448 NRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIK 483



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 39/219 (17%)

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H+  +  G   +  + + L+   +  G I  + ++F  L +  +  WN I+ G ++N 
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG-----------------------FV 463
              + L ++ ++    + PD  T   +L AC  GG                       FV
Sbjct: 99  HFQDALLMYSKMQLARVSPDSFTFPHLLKAC--GGLSHLQMGRFVHAQVFRLGFEADVFV 156

Query: 464 DKGMLVFSAMKEEYGV-------MPGEEH----YACIIDLLCQAGQLGKAIDITS---TM 509
             G++   A     G        +P  E     +  I+    Q G+  +A++I S    M
Sbjct: 157 QNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM 216

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
             +P C    S+L A     D++   ++   +M + L +
Sbjct: 217 DVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLET 255


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 179/587 (30%), Positives = 299/587 (50%), Gaps = 45/587 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C +         +HG  FKLG      + N  +D+YS+ G   +   LFD    KN
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKN 364

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                          VVSWN++I GY+  G      E+  +MQ 
Sbjct: 365 -------------------------------VVSWNTIIWGYSKEGDFRGVFELLQEMQR 393

Query: 141 Q-GVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +  VR +  T    +  V  AC G       K+IHG   R G  L + ++ N+ +  Y K
Sbjct: 394 EEKVRVNEVT----VLNVLPACSGEHQLLSLKEIHGYAFRHGF-LKDELVANAFVAAYAK 448

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              L  A  VF  ME   + SWN+LI     +G+   +LD F  M  SG  PD +TI  +
Sbjct: 449 CSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSL 508

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC +L+ L  GK++    ++ G   +  +  + + L+ +C+ +     +F++++    
Sbjct: 509 LLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSL 568

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              NVMI+ + +      AL+ F+ ML   I+P E  ++ VL +   +  +  G + HS 
Sbjct: 569 VCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSF 628

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+K+    +A V  +L++MYAK G ++ S  IF +++++D   WN I+ G   +G   + 
Sbjct: 629 ALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKA 688

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           +++FE +  +G  PD  T   VL+ACN+ G V +G+     M+  YGV P  EHYAC++D
Sbjct: 689 IELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVD 748

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +L +AGQL +A+ + + MP +P   IW S+L +   YGD+++ E V++++++L+      
Sbjct: 749 MLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAEN 808

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           Y LL+  YA  G+W+ + +V++ M++NG++K  GCSWI I   +Y F
Sbjct: 809 YVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRF 855



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 195/394 (49%), Gaps = 31/394 (7%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTFSILLSTVSSAC 161
           VFD   E D+  +N+++SGY+       A+ +F + +    + P  FT    L  V+ AC
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFT----LPCVAKAC 205

Query: 162 H-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
                   G+ +H   +++G   S+  +GN+LI MYGK G +  A  VF  M   +++SW
Sbjct: 206 AGVADVELGEAVHALALKAG-GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSW 264

Query: 215 NSLISGCF-NSGYGEL--ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           NS++  C  N G+GE      +       G  PD  T+  VI AC  +  +  G  V  L
Sbjct: 265 NSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGL 324

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           + K+G      V ++ +D++SKC  L ++  LF+     +    N +I  Y + G     
Sbjct: 325 AFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGV 384

Query: 332 LELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHG----SQFHSMAIKSGFDSNAVVASS 386
            EL Q M RE+ +R  E T   VL+ +P    EH      + H  A + GF  + +VA++
Sbjct: 385 FELLQEMQREEKVRVNEVT---VLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANA 441

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
            +  YAK  S+D +  +F  ++ + + SWN ++    QNG   ++LD+F  +++ G+ PD
Sbjct: 442 FVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPD 501

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           R T+ ++LLAC    F+  G       KE +G M
Sbjct: 502 RFTIGSLLLACARLKFLRCG-------KEIHGFM 528



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 139/261 (53%), Gaps = 7/261 (2%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFEQ 306
            I I++ AC   +N+  G++V AL      L N +VLS   I ++S C    DS  +F+ 
Sbjct: 94  AIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDA 153

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
               D  + N ++S Y R      A+ LF +L+   D+ P  FTL CV  +   +  VE 
Sbjct: 154 AKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVEL 213

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H++A+K+G  S+A V ++L+ MY K G ++S+ ++F  +  R+LVSWN++M   ++
Sbjct: 214 GEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSE 273

Query: 425 NGRAAETLDVFEELL---EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
           NG   E   VF+ LL   EEGL PD  T+  V+ AC   G V  GM+V   +  + G+  
Sbjct: 274 NGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVH-GLAFKLGITE 332

Query: 482 GEEHYACIIDLLCQAGQLGKA 502
                  ++D+  + G LG+A
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEA 353



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 156/302 (51%), Gaps = 6/302 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  +  S    ++VVL   +I MY   G    + GVF   +E D+  +N+L+SG  
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYS 170

Query: 223 NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +     A+  F  +   +  +PD +T+  V  AC  + +++ G+ V AL++K G  S++
Sbjct: 171 RNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDA 230

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN-VMISTYGRYGFGEVALELFQLMLR 340
            V +A I ++ KC  +E +V++FE +   +    N VM +     GFGE      +L++ 
Sbjct: 231 FVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLIS 290

Query: 341 ED--IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           E+  + P   T+  V+ +   +  V  G   H +A K G      V +SL++MY+K G +
Sbjct: 291 EEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYL 350

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLA 456
             +  +F     +++VSWNTI+ G ++ G      ++ +E+  EE +  + +T+  VL A
Sbjct: 351 GEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPA 410

Query: 457 CN 458
           C+
Sbjct: 411 CS 412



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 189/443 (42%), Gaps = 72/443 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K     K IHG + + G     ++G   + LY +  +      +FD++  K+
Sbjct: 508 LLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKS 567

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN+                               MI+G++       AL+ F +M  
Sbjct: 568 LVCWNV-------------------------------MITGFSQNELPCEALDTFRQMLS 596

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P     + +L   S VS+   GK++H   +++ LS  +  +  +LIDMY K G + 
Sbjct: 597 GGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLS-EDAFVTCALIDMYAKCGCME 655

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  +F  + E D   WN +I+G    G+G  A++ F  M+  G  PD +T   V+ AC 
Sbjct: 656 QSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACN 715

Query: 258 K-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DR 309
                   L+ L + + ++ +  K+         +  +D+  +  +L ++++L  ++ D 
Sbjct: 716 HAGLVTEGLKYLGQMQNLYGVKPKLEH------YACVVDMLGRAGQLTEALKLVNEMPDE 769

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGSQ 367
            D  + + ++S+   YG  E+  E+ + +L  ++ P +     +LS++   +   +   +
Sbjct: 770 PDSGIWSSLLSSCRNYGDLEIGEEVSKKLL--ELEPNKAENYVLLSNLYAGLGKWDEVRK 827

Query: 368 FHSMAIKSGFDSNA-----VVASSLMEMYAKTGSIDSSTEI---FVKLDKRDLVSWNTIM 419
                 ++G   +A      +   +       GS+  S +I   ++KL+K+         
Sbjct: 828 VRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKK--------- 878

Query: 420 MGLTQNGRAAETLDVFEELLEEG 442
             +++ G   +T  V  EL EEG
Sbjct: 879 --ISKIGYKPDTSCVLHELEEEG 899


>gi|15236431|ref|NP_192561.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208454|sp|Q9SUF9.1|PP305_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g08210
 gi|5262194|emb|CAB45791.1| putative protein [Arabidopsis thaliana]
 gi|7267461|emb|CAB81157.1| putative protein [Arabidopsis thaliana]
 gi|332657209|gb|AEE82609.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 686

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/579 (31%), Positives = 300/579 (51%), Gaps = 12/579 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C           ++  + K        L N  +D+Y + G   +    F EI +
Sbjct: 111 SAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILR 170

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +  SWN  + G  K+  +D A+ +F  +P+P+VVSWN +ISG+   G S  ALE   +M
Sbjct: 171 PSSTSWNTLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKG-SPRALEFLVRM 229

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +G+   GF     L   S       GKQ+H  +++SGL  S   + ++LIDMY   G 
Sbjct: 230 QREGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAI-SALIDMYSNCGS 288

Query: 196 LYYAFGVFLNMEELDIIS----WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           L YA  VF + E+L + S    WNS++SG   +   E AL     +  S    D YT+S 
Sbjct: 289 LIYAADVF-HQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSG 347

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            +  C    NL  G QV +L V  G+  + IV S  +DL +    ++D+ +LF +L   D
Sbjct: 348 ALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKD 407

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               + +I    + GF  +A  LF+ +++  +   +F +S +L     +  +  G Q H 
Sbjct: 408 IIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHG 467

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + IK G++S  V A++L++MY K G ID+   +F  + +RD+VSW  I++G  QNGR  E
Sbjct: 468 LCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEE 527

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
               F +++  G+ P+++T   +L AC + G +++       MK EYG+ P  EHY C++
Sbjct: 528 AFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETMKSEYGLEPYLEHYYCVV 587

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL QAG   +A ++ + MP +P  +IW S+L A   + +  L   +AE+++      P 
Sbjct: 588 DLLGQAGLFQEANELINKMPLEPDKTIWTSLLTACGTHKNAGLVTVIAEKLLKGFPDDPS 647

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            Y+ L+ AYA  G W+ + +V++  +K G  K +G SWI
Sbjct: 648 VYTSLSNAYATLGMWDQLSKVREAAKKLGA-KESGMSWI 685



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 216/478 (45%), Gaps = 76/478 (15%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C   ++F   ++I  H+ K G + + ++ N  + +Y  F    D  ++FDE+ ++N 
Sbjct: 12  LRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERN- 70

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                         +V+W +M+SGY S G  + A+E++ +M L 
Sbjct: 71  ------------------------------IVTWTTMVSGYTSDGKPNKAIELYRRM-LD 99

Query: 142 GVRPSGFTFSILLSTVSSACH--GKQIHGSMIRSGLSLSN----VVLGNSLIDMY---GK 192
               +   F  + S V  AC   G    G ++   +   N    VVL NS++DMY   G+
Sbjct: 100 SEEEAANEF--MYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGR 157

Query: 193 L----------------------------GVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           L                            G++  A  +F  M + +++SWN LISG  + 
Sbjct: 158 LIEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDK 217

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G    AL+    M+  G   D + +   + AC+    L  GKQ+    VK G  S+   +
Sbjct: 218 G-SPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAI 276

Query: 285 SATIDLFSKCNRLEDSVRLFEQLD---RWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           SA ID++S C  L  +  +F Q         AV N M+S +      E AL L   + + 
Sbjct: 277 SALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLLQIYQS 336

Query: 342 DIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           D+    +TLS  L   I    +  G Q HS+ + SG++ + +V S L++++A  G+I  +
Sbjct: 337 DLCFDSYTLSGALKICINYVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQDA 396

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            ++F +L  +D+++++ ++ G  ++G  +    +F EL++ GL  D+  ++ +L  C+
Sbjct: 397 HKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCS 454



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 129/313 (41%), Gaps = 37/313 (11%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   I+  +  C K++   +G+ + A  +K G   N  + +  I ++     L D+ ++F
Sbjct: 4   DLKLIAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVF 63

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVLSSIP-IPPV 362
           +++   +      M+S Y   G    A+EL++ ML  E+    EF  S VL +   +  +
Sbjct: 64  DEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDI 123

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI------------------------- 397
           + G   +    K     + V+ +S+++MY K G +                         
Sbjct: 124 QLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGY 183

Query: 398 ------DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
                 D +  +F ++ + ++VSWN ++ G    G +   L+    +  EGL  D   L 
Sbjct: 184 CKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLDGFALP 242

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI--TSTM 509
             L AC++GG +  G  +   + +  G+       + +ID+    G L  A D+     +
Sbjct: 243 CGLKACSFGGLLTMGKQLHCCVVKS-GLESSPFAISALIDMYSNCGSLIYAADVFHQEKL 301

Query: 510 PFQPGCSIWESIL 522
                 ++W S+L
Sbjct: 302 AVNSSVAVWNSML 314



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 104/222 (46%), Gaps = 10/222 (4%)

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +   + G    +  IK G   N  +A++++ MY     +  + ++F ++ +R++V+W T+
Sbjct: 18  VQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTM 77

Query: 419 MMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           + G T +G+  + ++++  +L+ E    +    +AVL AC   G +  G+LV+  + +E 
Sbjct: 78  VSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKE- 136

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTE 535
            +         ++D+  + G+L   I+  S+     +P  + W +++     Y    L +
Sbjct: 137 NLRGDVVLMNSVVDMYVKNGRL---IEANSSFKEILRPSSTSWNTLISG---YCKAGLMD 190

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
                   +  P+ + ++ L   +  +G   A+  + ++ R+
Sbjct: 191 EAVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVRMQRE 232


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 195/646 (30%), Positives = 332/646 (51%), Gaps = 99/646 (15%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +F+   +IHG + +LGF ++ ++ N  + +Y +        ++FDE+        
Sbjct: 136 CGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL-------- 187

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGV 143
             C RG+                   D V+WNS++S Y+ C   + A+ +F +M +  G+
Sbjct: 188 --CYRGIC------------------DSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGI 227

Query: 144 RPSGFTFSILLSTVS----SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
            P       +L          C G+Q+HG  +RSGL + +V +GN+L+DMY K G +  A
Sbjct: 228 LPDTVGVVNILPVCGYLGLGLC-GRQVHGFCVRSGL-VEDVFVGNALVDMYAKCGKMEDA 285

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR--------------YSGYS-- 243
             VF  M   D+++WN++++G   +G  E AL  F  MR               SGY+  
Sbjct: 286 NKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQR 345

Query: 244 -------------------PDEYTISIVINACTKLRNLDKGKQVFALSVKVGF------- 277
                              P+  T+  +++AC  +  L  GK+    SVK          
Sbjct: 346 GFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDD 405

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQL---DRWDYAVINVMISTYGRYGFGEVALEL 334
             +  V++A ID+++KC  LE +  +F+++   DR D     VMI  Y ++G    AL+L
Sbjct: 406 TDDLAVINALIDMYAKCKSLEVARAMFDEICPKDR-DVVTWTVMIGGYAQHGDANHALQL 464

Query: 335 FQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK-SGFDSNAV-VASSLME 389
           F  M + D  I P +FT+SCVL +   +  ++ G Q H+  ++ S  DS+ + VA+ L++
Sbjct: 465 FSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLID 524

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K+G +D++  +F  + KR+ VSW +++ G   +GR+ +   VF+E+ +E L  D IT
Sbjct: 525 MYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGIT 584

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              VL AC++ G              ++GV PG EHYAC++DLL +AG+LG+A+ + + M
Sbjct: 585 FLVVLYACSHSGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDM 631

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +P   +W ++L A  I+ + +L E  A+++++L+  +   Y+LL+  YA   RW+ + 
Sbjct: 632 PIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVA 691

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           R+  +M++ GI K+ G SW+  +  + TF  G+  H   QKIY  L
Sbjct: 692 RIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETL 737



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 125/504 (24%), Positives = 228/504 (45%), Gaps = 76/504 (15%)

Query: 92  LKSDNLDTALKVFDEIPEPD---VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           + S+++  A+ + ++   P    V  WN +I         + AL +F +M+     P  +
Sbjct: 68  ISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHY 127

Query: 149 TFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           TF  +      +S+   G  IHG +IR G   SNV + N++I MYGK   + +A  VF  
Sbjct: 128 TFPFVFKACGEISNFELGASIHGCVIRLGFE-SNVFVCNAVISMYGKCKAVVHARKVF-- 184

Query: 206 MEEL------DIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTK 258
            +EL      D ++WNS++S   +     +A+  F  M    G  PD   +  ++  C  
Sbjct: 185 -DELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGY 243

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L     G+QV    V+ G + +  V +A +D+++KC ++ED+ ++FE++   D    N M
Sbjct: 244 LGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAM 303

Query: 319 ISTYGRYGFGEVALELFQLMLREDI----------------------------------- 343
           ++ Y + G  E AL LF  M  E I                                   
Sbjct: 304 VTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRC 363

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK-------SGFDSNAVVASSLMEMYAKTG 395
           RP   TL  +LS+   +  + HG + H  ++K       +    +  V ++L++MYAK  
Sbjct: 364 RPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCK 423

Query: 396 SIDSSTEIFVKL--DKRDLVSWNTIMMGLTQNGRAAETLDVFEEL--LEEGLPPDRITLA 451
           S++ +  +F ++    RD+V+W  ++ G  Q+G A   L +F E+  ++  + P+  T++
Sbjct: 424 SLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTIS 483

Query: 452 AVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            VL+AC       +G  +   +L  S +  +   +       C+ID+  ++G +  A  +
Sbjct: 484 CVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVAN-----CLIDMYSKSGDVDTAQVV 538

Query: 506 TSTMPFQPGCSIWESILRASAIYG 529
             +M  +   S W S+L    ++G
Sbjct: 539 FDSMSKRNAVS-WTSLLTGYGMHG 561


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 175/586 (29%), Positives = 297/586 (50%), Gaps = 42/586 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +  +    +HG   KLG N    + N  +D+YS+     +   LFD+  +KN    
Sbjct: 214 CAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKN---- 269

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                      +VSWNSMI GYA          +  KMQ +  +
Sbjct: 270 ---------------------------IVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
                F+IL   V   C         K++HG   R GL  SN ++ N+ I  Y + G L 
Sbjct: 303 MKADEFTIL--NVLPVCLERSELQSLKELHGYSWRHGLQ-SNELVANAFIAAYTRCGALC 359

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  VF  M+   + SWN+L+ G   +     ALD +  M  SG  PD +TI  ++ AC+
Sbjct: 360 SSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           ++++L  G+++   +++ G   +  +  + + L+  C +   +  LF+ ++       NV
Sbjct: 420 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MI+ Y + G  + A+ LF+ ML + I+P E  + CV  +   +  +  G + H  A+K+ 
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 539

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +  V+SS+++MYAK G I  S  IF +L ++D+ SWN I+ G   +GR  E L++FE
Sbjct: 540 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 599

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++L  GL PD  T   +L+AC++ G V+ G+  F+ M   + + P  EHY C++D+L +A
Sbjct: 600 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 659

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G++  A+ +   MP  P   IW S+L +  I+G++ L E VA ++++L+   P  Y L++
Sbjct: 660 GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 719

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
             +A  G+W+ + RV+  M+  G+ K  GCSWI +  +++ F  G+
Sbjct: 720 NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGD 765



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 216/450 (48%), Gaps = 46/450 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHL-FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+  C   K  +  + +H  +     F     L  R + +YS  G+  D   +FD++ +K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N   WN  +    +++  + A+ +F E+                              + 
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSEL------------------------------IS 93

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           +   +P  FT   ++   +       G+ IHG   +  L +S+V +GN+LI MYGK G++
Sbjct: 94  VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDL-VSDVFVGNALIAMYGKCGLV 152

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY--SGYSPDEYTISIVIN 254
             A  VF +M E +++SWNS+I G   +G+ + + + F  M      + PD  T+  V+ 
Sbjct: 153 EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLP 212

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            C    +++KG  V  L+VK+G     +V ++ ID++SKC  L ++  LF++ D+ +   
Sbjct: 213 VCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS 272

Query: 315 INVMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIPI----PPVEHGSQF 368
            N MI  Y R         L Q M  ED  ++  EFT   +L+ +P+      ++   + 
Sbjct: 273 WNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFT---ILNVLPVCLERSELQSLKEL 329

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H  + + G  SN +VA++ +  Y + G++ SS  +F  +D + + SWN ++ G  QN   
Sbjct: 330 HGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDP 389

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + LD++ ++ + GL PD  T+ ++LLAC+
Sbjct: 390 RKALDLYLQMTDSGLDPDWFTIGSLLLACS 419



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 140/567 (24%), Positives = 254/567 (44%), Gaps = 73/567 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C         + IHG   K+   +  ++GN  + +Y + G                
Sbjct: 107 VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL--------------- 151

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           ++ A+KVF+ +PE ++VSWNS+I G++  G+   +   F +M  
Sbjct: 152 ----------------VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML- 194

Query: 141 QGVRPSGFTFSI-LLSTVSSACHGKQ-------IHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             V    F   +  L TV   C G++       +HG  ++ GL+   +++ NSLIDMY K
Sbjct: 195 --VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLN-EELMVNNSLIDMYSK 251

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY-----SGYSPDEY 247
              L  A  +F   ++ +I+SWNS+I G       E     FY ++      +    DE+
Sbjct: 252 CRFLSEAQLLFDKNDKKNIVSWNSMIGG---YAREEDVCRTFYLLQKMQTEDAKMKADEF 308

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           TI  V+  C +   L   K++   S + G  SN +V +A I  +++C  L  S R+F+ +
Sbjct: 309 TILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM 368

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGS 366
           D    +  N ++  Y +      AL+L+  M    + P  FT+ S +L+   +  + +G 
Sbjct: 369 DTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 428

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H  A+++G   +  +  SL+ +Y   G   ++  +F  ++ R LVSWN ++ G +QNG
Sbjct: 429 EIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 488

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK--EEYGVMPGEE 484
              E +++F ++L +G+ P  I +  V  AC+            SA++  +E      + 
Sbjct: 489 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ----------LSALRLGKELHCFALKA 538

Query: 485 HY-------ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           H        + IID+  + G +G +  I   +  +   + W  I+    I+G  K    +
Sbjct: 539 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALEL 597

Query: 538 AERMMDLQL-PSPLPYSLLTQAYAMRG 563
            E+M+ L L P    ++ +  A +  G
Sbjct: 598 FEKMLRLGLKPDDFTFTGILMACSHAG 624



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 249 ISIVINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           + +++ AC + ++++ G+++  + S    F ++ ++ +  I ++S C    DS  +F++L
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
            R +    N ++S Y R    E A+ +F +L+   + +P  FTL CV+ +   +  +  G
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
              H MA K    S+  V ++L+ MY K G ++ + ++F  + +R+LVSWN+I+ G ++N
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 426 GRAAETLDVFEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           G   E+ + F E+L  EE   PD  TL  VL  C     ++KGM V
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV 226


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/597 (29%), Positives = 317/597 (53%), Gaps = 41/597 (6%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN ASL     ++  C + +   F   +HG + K G N+   LGN  +D+Y +FG     
Sbjct: 218 VNVASLV---SILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFG----- 269

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     +L++++ VF+ + E + VSWNS I  +A  G+ +
Sbjct: 270 --------------------------DLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHE 303

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
             LEMF  M    V P   T S LL  +    +   GK++HG  IR  +  S++ + N+L
Sbjct: 304 DVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVE-SDIFIANTL 362

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMY K G    A  +F N+E  +++SWN++I+    +G    A      M+ +G  P+ 
Sbjct: 363 MDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNS 422

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           +T+  ++ AC+++ ++  GKQ+ A S++   +S+  V +A ID+++KC +L  +  +F++
Sbjct: 423 FTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR 482

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHG 365
            ++ D    N +I  Y +      +L LFQ M    I     + + C+ +   +   + G
Sbjct: 483 SEK-DGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQG 541

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H + +K   DS+  +A+SL+++Y K G +D++++IF ++ ++D+ SWNT+++G   +
Sbjct: 542 KEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMH 601

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G+     ++F+ + ++G+  D ++  AVL  C++GG VD+G   FS M  +  + P + H
Sbjct: 602 GQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQ-NIKPQQMH 660

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YAC++DLL +AGQL ++ +I   MPF+    +W ++L +  I+GD++L    AE + +L+
Sbjct: 661 YACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELK 720

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
             +   Y+LL   Y+  G W     VKK+M+   + K    SW+   N++  F  G+
Sbjct: 721 PENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 777



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 190/395 (48%), Gaps = 8/395 (2%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV------SSACHGKQIHG 168
           WNS+    AS      AL ++++M   GVRP   TF   L              G ++H 
Sbjct: 83  WNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHA 142

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
           + +R GL L++V  GN+L+  Y   G    A  VF  M   D++SWNSL+S    +G  E
Sbjct: 143 AALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLE 202

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            A      M  SG   +  ++  ++ AC   R+   G  V  L +K G  S   + +A +
Sbjct: 203 DAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALV 262

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
           D++ K   LE S+ +F  +   +    N  I  +   GF E  LE+F+LM   D+ P   
Sbjct: 263 DMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSV 322

Query: 349 TLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           TLS +L ++      H G + H  +I+   +S+  +A++LM+MYAK G  + ++ IF  +
Sbjct: 323 TLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENI 382

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
           + R++VSWN ++  LTQNG  AE   +  E+ + G  P+  TL  +L AC+    V  G 
Sbjct: 383 EVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGK 442

Query: 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
            +  A      +M        +ID+  + GQL  A
Sbjct: 443 QI-HAWSIRRSLMSDLFVSNALIDVYAKCGQLNLA 476



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 244/505 (48%), Gaps = 49/505 (9%)

Query: 48  AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI 107
           A  + GN  +  Y+  G + D  ++FDE+P ++ +SWN  +  LL +  L+ A +    +
Sbjct: 152 ADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGM 211

Query: 108 PEPDV-VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
               V V+  S++S   +CG                 R  GF              G  +
Sbjct: 212 MRSGVPVNVASLVSILPACGTE---------------RDEGF--------------GLCV 242

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF-NSG 225
           HG +++ GL+ S V LGN+L+DMYGK G L  +  VF  M+E + +SWNS I GCF ++G
Sbjct: 243 HGLVLKFGLN-SVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAI-GCFAHAG 300

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
           + E  L+ F  M     +P   T+S ++ A   L     GK++   S++    S+  + +
Sbjct: 301 FHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIAN 360

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
             +D+++K    E +  +FE ++  +    N MI+   + G    A  L   M +    P
Sbjct: 361 TLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECP 420

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             FTL  +L +   +  V+ G Q H+ +I+    S+  V+++L+++YAK G ++ +  IF
Sbjct: 421 NSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIF 480

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            + +K D VS+NT+++G +Q+    E+L +F+++   G+  D ++    L AC+      
Sbjct: 481 DRSEK-DGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACS------ 533

Query: 465 KGMLVFSAMKEEYGVMPG---EEH---YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
             +  F   KE +GV+     + H      ++D+  + G L  A  I + +  Q   + W
Sbjct: 534 -NLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRIT-QKDVASW 591

Query: 519 ESILRASAIYGDVKLTENVAERMMD 543
            +++    ++G + +   + + M D
Sbjct: 592 NTMILGYGMHGQIDVAFELFDLMKD 616


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/600 (27%), Positives = 318/600 (53%), Gaps = 47/600 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ +CL  +S+   + +HGH+ K G + + ++ +  +++Y++ G                
Sbjct: 73  LLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCG---------------- 116

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          N++ A +VFD +   +VV+W +++ G+       +A+ +F +M  
Sbjct: 117 ---------------NMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLY 161

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T S +L   S++ S   G Q H  +I+  +   +  +G++L  +Y K G L 
Sbjct: 162 AGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDF-DASVGSALCSLYSKCGRLE 220

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  + E ++ISW S +S C ++G     L  F  M      P+E+T++  ++ C 
Sbjct: 221 DALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCC 280

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           ++ +L+ G QV++L +K G+ SN  V ++ + L+ K   + ++ RLF ++D       N 
Sbjct: 281 EILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNA 340

Query: 318 MISTYGRY-----------GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
           MI+ + +              G  AL+LF  +    ++P  FTLS VLS    +  +E G
Sbjct: 341 MIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQG 400

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  IK+GF S+ +V++SL+ MY+K GSI+ +++ F+++  R +++W +++ G +Q+
Sbjct: 401 EQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQH 460

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G + + L +FE++   G+ P+ +T   VL AC++ G V + +  F  M+++Y + P  +H
Sbjct: 461 GMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDH 520

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y C++D+  + G+L +A++    M ++P   IW + +     +G+++L    AE+++ L+
Sbjct: 521 YECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLK 580

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
              P  Y LL   Y    R+E + RV+K+M +  + K+   SWI IK+++Y+F      H
Sbjct: 581 PKDPETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTH 640



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 166/358 (46%), Gaps = 58/358 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S +S       H ++ K   +    +G+    LYS+ G  +D L+ F  I +
Sbjct: 172 SAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIRE 231

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                               V+SW S +S  A  G     L +F +M
Sbjct: 232 KN-------------------------------VISWTSAVSACADNGAPVKGLRLFVEM 260

Query: 139 QLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
               ++P+ FT   L S +S  C       G Q++   I+ G   SN+ + NSL+ +Y K
Sbjct: 261 IAVDIKPNEFT---LTSALSQCCEILSLELGTQVYSLCIKFGYE-SNLRVRNSLLYLYLK 316

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISG--------------CFNSGYGELALDQFYSMR 238
            G +  A  +F  M++  +++WN++I+G              C     G  AL  F  + 
Sbjct: 317 SGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHR---GSEALKLFSKLN 373

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG  PD +T+S V++ C+++  +++G+Q+ A ++K GFLS+ IV ++ I ++SKC  +E
Sbjct: 374 LSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIE 433

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            + + F ++          MI+ + ++G  + AL +F+ M    +RP   T   VLS+
Sbjct: 434 RASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSA 491



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 58/254 (22%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C    + +  + IH    K GF +   +    + +YS+ G+ +   +
Sbjct: 378 KPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASK 437

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+  +  I+W                                SMI+G++  G S  A
Sbjct: 438 AFLEMSTRTMIAW-------------------------------TSMITGFSQHGMSQQA 466

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN------- 184
           L +F  M L GVRP+  TF  +LS  S        H  M+   L+   ++          
Sbjct: 467 LHIFEDMSLAGVRPNAVTFVGVLSACS--------HAGMVSQALNYFEIMQKKYKIKPAM 518

Query: 185 ----SLIDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSGYGEL---ALDQFY 235
                ++DM+ +LG L  A      +N E  + I W++ I+GC + G  EL   A +Q  
Sbjct: 519 DHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFI-WSNFIAGCKSHGNLELGFYAAEQLL 577

Query: 236 SMRYSGYSPDEYTI 249
           S++     P+ Y +
Sbjct: 578 SLKPK--DPETYVL 589


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/612 (29%), Positives = 314/612 (51%), Gaps = 36/612 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++   ++  +   A  +H   +KLG + + ++G+  +D YS      D   +F+ I +
Sbjct: 166 TTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVR 225

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K                               D V W +M+S Y+     + A  +FSKM
Sbjct: 226 K-------------------------------DAVVWTAMVSCYSENDCPENAFRVFSKM 254

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           ++ G +P+ F  + +L     + S   GK IHG  I++ L+ +   +G +L+DMY K G 
Sbjct: 255 RVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGD 313

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  +   D+I  + +IS    S   E A + F  +  S   P+EY++S V+ A
Sbjct: 314 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT +  LD GKQ+   ++K+G  S+  V +A +D ++KCN ++ S+++F  L   +    
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N ++  + + G GE AL +F  M    +  T+ T S VL +      + H  Q H    K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S F+++ V+ +SL++ YAK G I  + ++F  L +RD++SWN I+ G   +G+AA+ L++
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALEL 553

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+ + +  +  + IT  A+L  C+  G V+ G+ +F +M+ ++G+ P  EHY CI+ LL 
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLG 613

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+     +P  P   +W ++L +  I+ +V L    AE++++++      Y L
Sbjct: 614 RAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVL 673

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA  G  + +  ++K MR  G+ KV G SW+ IK  I+ F+ G + H   + I  +
Sbjct: 674 LSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAM 733

Query: 615 LRLLTWEMEDEG 626
           L  L  +   EG
Sbjct: 734 LEWLNLKTSREG 745



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 217/446 (48%), Gaps = 38/446 (8%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT--YLGNRCLDLYSRFGTSDDVLQLFDE 75
           C++ +  C++       + +HGH+ + G       +  N  L++Y + G           
Sbjct: 62  CARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP---------- 111

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                L +A ++FD +PE ++VS+ +++  +A  G  + A  +F
Sbjct: 112 ---------------------LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF 150

Query: 136 SKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +++ +G   + F  + +L     + +A     +H    + G    N  +G+ LID Y  
Sbjct: 151 RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHD-HNAFVGSGLIDAYSL 209

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
             ++  A  VF  +   D + W +++S    +   E A   F  MR SG  P+ + ++ V
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSV 269

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   L ++  GK +   ++K    +   V  A +D+++KC  ++D+   FE +   D 
Sbjct: 270 LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDV 329

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
            +++ MIS Y +    E A ELF  ++R  + P E++LS VL +   +  ++ G Q H+ 
Sbjct: 330 ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNH 389

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK G +S+  V ++LM+ YAK   +DSS +IF  L   + VSWNTI++G +Q+G   E 
Sbjct: 390 AIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEA 449

Query: 432 LDVFEELLEEGLPPDRITLAAVLLAC 457
           L VF E+    +P  ++T ++VL AC
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRAC 475


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 192/641 (29%), Positives = 327/641 (51%), Gaps = 47/641 (7%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           Q   R  S +S    +   GH+    FN+H Y  N   D   +   S       + + + 
Sbjct: 10  QFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAY-ANALQDCIQKDEPSRGKGLHCEILKRG 68

Query: 80  NCI---SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            C+   +WNI L   +KSD L  A K+FDE+PE + +S+ ++I GYA       A+E+F 
Sbjct: 69  GCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFV 128

Query: 137 KMQLQGVRPSGFTFSILLST-VSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           ++  +G   + F F+ +L   VS+ C   G  IH  + + G   SN  +G +LID Y   
Sbjct: 129 RLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHE-SNAFVGTALIDAYSVC 187

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGELALDQFYSMRYSGYSPDEYTISI 251
           G +  A  VF  +   D++SW  +++ CF  N  + E AL  F  MR  G+ P+ +T + 
Sbjct: 188 GRVDVAREVFDGILYKDMVSWTGMVT-CFAENDCFKE-ALKLFSQMRMVGFKPNNFTFAS 245

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V  AC  L   D GK V   ++K  +  +  V  A +DL++K   ++D+ R FE++ + D
Sbjct: 246 VFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKD 305

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               + MI+ Y +    + A+E+F  M +  + P +FT + VL +   +  +  G+Q H 
Sbjct: 306 VIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHC 365

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             IK G  S+  V+++LM++YAK G +++S E+F +   R+ V+WNT+++G  Q G   +
Sbjct: 366 HVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEK 425

Query: 431 TLDVFEELLE------------------------EGL-------PPDRITLAAVLLACNY 459
            L +F  +LE                         GL        PD++T   VL AC  
Sbjct: 426 ALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACAN 485

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G +D+G   F++M +++G+ P  EHY C++ LL + G L KA+ +   +PFQP   +W 
Sbjct: 486 AGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWR 545

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           ++L A  I+ D++L    A+R+++++      + LL+  YA   RW+ +  V+K M++ G
Sbjct: 546 ALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKG 605

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           + K  G SWI  +  +++F  G+  H    ++ ++  +L W
Sbjct: 606 VKKEPGLSWIESQGTVHSFTVGDTSH---PEVRVINGMLEW 643


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 294/532 (55%), Gaps = 6/532 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A ++F  +   DVV+WN+MI+G +  G  D A+++  +MQ +G+ P+  T   +L TV  
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           A    HGK +HG  +R     + VV+G  L+DMY K   L YA  +F  M   + +SW++
Sbjct: 223 AKALGHGKALHGYCVRRSFD-NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 217 LISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +I G   S   + AL+ F  M       P   T+  V+ AC KL +L +G+++    +K+
Sbjct: 282 MIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL 341

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G + + ++ +  + +++KC  ++D++R F++++  D    + ++S   + G   VAL +F
Sbjct: 342 GSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           ++M    I P   T+  VL +   +  ++HG   H   I  GF ++ ++ ++L++MY+K 
Sbjct: 402 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 461

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G I  + E+F ++D+ D+VSWN +++G   +G   E L +F +LL  GL PD IT   +L
Sbjct: 462 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 521

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            +C++ G V +G L F AM  ++ ++P  EH  C++D+L +AG + +A      MPF+P 
Sbjct: 522 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             IW ++L A  I+ +++L E V++++  L   S   + LL+  Y+  GRW+    ++  
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 641

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  G+ K+ GCSWI I   ++ F  G+  H    +I   L  L  EM+  G
Sbjct: 642 QKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLG 693



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 246/520 (47%), Gaps = 49/520 (9%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L++ C+  KS   AK IH H  K   NA + + ++   LY                   
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLY------------------- 53

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                       L  + +  A ++FDEIP P V+ WN +I  YA  G  D A++++  M 
Sbjct: 54  ------------LSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101

Query: 140 LQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             GVRP+ +T+  +L   S       G +IH      GL  S+V +  +L+D Y K G+L
Sbjct: 102 HLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLE-SDVFVCTALVDFYAKCGIL 160

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F +M   D+++WN++I+GC   G  + A+     M+  G  P+  TI  V+   
Sbjct: 161 VEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTV 220

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            + + L  GK +    V+  F +  +V +  +D+++KC  L  + ++F+ +   +    +
Sbjct: 221 GEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWS 280

Query: 317 VMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            MI  Y      + ALELF Q++L++ + PT  TL  VL +   +  +  G + H   IK
Sbjct: 281 AMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK 340

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G   + ++ ++L+ MYAK G ID +   F +++ +D VS++ I+ G  QNG AA  L +
Sbjct: 341 LGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSI 400

Query: 435 FEELLEEGLPPDRITLAAVLLACNY-----GGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           F  +   G+ PD  T+  VL AC++      GF   G L+      +  +         +
Sbjct: 401 FRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA------L 454

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ID+  + G++  A ++ + M      S W +++    I+G
Sbjct: 455 IDMYSKCGKISFAREVFNRMDRHDIVS-WNAMIIGYGIHG 493



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 35/236 (14%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C         + +H ++ KLG      LGN  L +Y++ G  DD ++ FDE+  K+ +S+
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSF 381

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           +  + G +++ N                               +  AL +F  MQL G+ 
Sbjct: 382 SAIVSGCVQNGN-------------------------------AAVALSIFRMMQLSGID 410

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +L   S +++  HG   HG +I  G + ++ ++ N+LIDMY K G + +A  
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFA-TDTLICNALIDMYSKCGKISFARE 469

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           VF  M+  DI+SWN++I G    G G  AL  F+ +   G  PD+ T   ++++C+
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/538 (30%), Positives = 299/538 (55%), Gaps = 5/538 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L+ A ++F  +P  D+V+WN MISG    G  D AL +F  MQ  G++P   T + 
Sbjct: 295 KCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLAS 354

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL  ++       GK+IHG ++R+   + +V L ++L+D+Y K   +  A  VF   + +
Sbjct: 355 LLPALTELNGFKQGKEIHGYIVRNCAHV-DVFLVSALVDIYFKCRDVRMAQNVFDATKSI 413

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++  +++ISG   +   E A+  F  +   G  P+   ++  + AC  +  +  G+++ 
Sbjct: 414 DVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELH 473

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K  +     V SA +D++SKC RL+ S  +F ++   D    N MIS++ + G  E
Sbjct: 474 GYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPE 533

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL+LF+ M+ E ++    T+S +LS+   +P + +G + H + IK    ++    S+L+
Sbjct: 534 EALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALI 593

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G+++ +  +F  + +++ VSWN+I+     +G   E++D+   + EEG   D +
Sbjct: 594 DMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHV 653

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A++ AC + G V +G+ +F  M EEY + P  EH +C++DL  +AG+L KA+   + 
Sbjct: 654 TFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIAD 713

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF+P   IW ++L A  ++ +V+L E  ++ +  L   +   Y L++   A+ GRW+ +
Sbjct: 714 MPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGV 773

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +++++M+   + K+ G SW+ + N  + F A +  H   ++IY+ L+ L  E++ EG
Sbjct: 774 SKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELKQEG 831



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 247/522 (47%), Gaps = 50/522 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    + +H     LG +   Y+G+  + +Y+  G                
Sbjct: 153 VVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGL--------------- 197

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           LD A +VFD + E D V WN M+ GY   G    A+ +F  M+ 
Sbjct: 198 ----------------LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRA 241

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T +  LS  ++      G Q+H   ++ GL    V + N+L+ MY K   L 
Sbjct: 242 SGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLE-PEVAVANTLVSMYAKCQCLE 300

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ +F  M   D+++WN +ISGC  +G  + AL  F  M+ SG  PD  T++ ++ A T
Sbjct: 301 EAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALT 360

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +L    +GK++    V+     +  ++SA +D++ KC  +  +  +F+     D  + + 
Sbjct: 361 ELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGST 420

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y      E A+++F+ +L   I+P    ++  L +   +  +  G + H   +K+ 
Sbjct: 421 MISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNA 480

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++    V S+LM+MY+K G +D S  +F K+  +D V+WN+++    QNG   E LD+F 
Sbjct: 481 YEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFR 540

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA------CII 490
           +++ EG+  + +T++++L AC        G+      KE +G++      A       +I
Sbjct: 541 QMIMEGVKYNNVTISSILSAC-------AGLPAIYYGKEIHGIIIKGPIRADLFAESALI 593

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           D+  + G L  A+ +   MP +   S W SI+ A   +G VK
Sbjct: 594 DMYGKCGNLELALRVFEHMPEKNEVS-WNSIISAYGAHGLVK 634



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 180/367 (49%), Gaps = 10/367 (2%)

Query: 100 ALKVFDEIPEPDV---VSWNSMISGYASCGYSDYALEMFSKM--QLQGVRPSGFTFSILL 154
           A+ VF  +P       + WN +I G+   G+   A+  + KM       RP G T   ++
Sbjct: 95  AVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVV 154

Query: 155 STVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            + ++  A H G+ +H +    GL   ++ +G++LI MY   G+L  A  VF  M+E D 
Sbjct: 155 KSCAALGALHLGRLVHRTTRALGLD-RDMYVGSALIKMYADAGLLDGAREVFDGMDERDC 213

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + WN ++ G   +G    A+  F  MR SG  P+  T++  ++ C    +L  G Q+  L
Sbjct: 214 VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTL 273

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK G      V +  + +++KC  LE++ RLF  + R D    N MIS   + G  + A
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDA 333

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L LF  M +  ++P   TL+ +L ++  +   + G + H   +++    +  + S+L+++
Sbjct: 334 LRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDI 393

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K   +  +  +F      D+V  +T++ G   N  +   + +F  LL  G+ P+ + +
Sbjct: 394 YFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMV 453

Query: 451 AAVLLAC 457
           A+ L AC
Sbjct: 454 ASTLPAC 460



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 190/421 (45%), Gaps = 39/421 (9%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++K+ +   S++  S L+        F   K IHG++ +   +   +L +  +D+Y    
Sbjct: 340 MQKSGLQPDSVTLAS-LLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIY---- 394

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                       K  ++  A  VFD     DVV  ++MISGY  
Sbjct: 395 ---------------------------FKCRDVRMAQNVFDATKSIDVVIGSTMISGYVL 427

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
              S+ A++MF  +   G++P+    +  L   +S      G+++HG ++++        
Sbjct: 428 NRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYE-GRCY 486

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + ++L+DMY K G L  +  +F  M   D ++WNS+IS    +G  E ALD F  M   G
Sbjct: 487 VESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEG 546

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              +  TIS +++AC  L  +  GK++  + +K    ++    SA ID++ KC  LE ++
Sbjct: 547 VKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELAL 606

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           R+FE +   +    N +IS YG +G  + +++L   M  E  +    T   ++S+     
Sbjct: 607 RVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAG 666

Query: 361 PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTI 418
            V+ G + F  M  +   +      S ++++Y++ G +D + +    +  K D   W  +
Sbjct: 667 QVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGAL 726

Query: 419 M 419
           +
Sbjct: 727 L 727



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 107/274 (39%), Gaps = 67/274 (24%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +  + K IHG + K    A  +  +  +D+Y + G  +  L++F+ +P+
Sbjct: 555 SSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPE 614

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                                VSWNS+IS Y + G    ++++   M
Sbjct: 615 KN-------------------------------EVSWNSIISAYGAHGLVKESVDLLCCM 643

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL-----------SNVVLGNSLI 187
           Q +G +    TF  L+S  +        H   ++ GL L             V   + ++
Sbjct: 644 QEEGFKADHVTFLALISACA--------HAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMV 695

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM--RYSG 241
           D+Y + G L  A     +M  + D   W +L+  C    N    E+A  + + +     G
Sbjct: 696 DLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCG 755

Query: 242 YSPDEYTISIVINA-------CTKLRNLDKGKQV 268
           Y    Y +   INA        +K+R L K K+V
Sbjct: 756 Y----YVLMSNINAVAGRWDGVSKMRRLMKDKKV 785


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 180/601 (29%), Positives = 315/601 (52%), Gaps = 45/601 (7%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +  + +H  + K+G+  + + G+  LD+Y++    +D  ++F  I  +N           
Sbjct: 117 EVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNS---------- 166

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                                V+WN++ISGYA  G    A  +   M+L+GV     TF+
Sbjct: 167 ---------------------VTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFA 205

Query: 152 ILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN-ME 207
            LL+ +      K   Q+H  +++ GL+ S+  + N++I  Y + G +  A  VF   +E
Sbjct: 206 PLLTLLDDPDLHKLTTQVHAKIVKHGLA-SDTTVCNAIITAYSECGSIEDAERVFDGAIE 264

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D+++WNS+++    +   E A   F  M+  G+ PD YT + VI+A  +  +  +GK 
Sbjct: 265 TRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKS 324

Query: 268 VFALSVKVGF-----LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           +  L +K G      +SNS++    + L S    +++++ +FE L+  D+   N +++ +
Sbjct: 325 LHGLVIKRGLEFLVPISNSLI---AMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGF 381

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G  E AL+ F+ M  + +    +  S VL S   +  ++ G Q H + +KSGF+ N 
Sbjct: 382 SQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNG 441

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            VASSL+ MY+K G I+ + + F    K   ++WN+++ G  Q+GR    LD+F  + + 
Sbjct: 442 FVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDR 501

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
            +  D IT  AVL AC++ G V++G     +M+ +YG+ P  EHYAC+IDLL +AG+L +
Sbjct: 502 RVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDE 561

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A  +   MPF+P   +W+++L A    GD++L   VA  +++L+      Y LL+  +  
Sbjct: 562 AKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGH 621

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             RW     +K++M++ G+ KV G SWI +KN + +FNA +  H   ++IYL L  L  E
Sbjct: 622 LRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGELMEE 681

Query: 622 M 622
           +
Sbjct: 682 I 682



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 190/381 (49%), Gaps = 8/381 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  K   +  A K+F E  + D VSWN+MI+G+ + G  + ALE    M+  G  
Sbjct: 38  NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFA 97

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
             G++F  +L  V+   +   G+Q+H  M++ G    NV  G++L+DMY K   +  AF 
Sbjct: 98  VDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYE-GNVFAGSALLDMYAKCERVEDAFE 156

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++   + ++WN+LISG    G    A      M   G   D+ T + ++        
Sbjct: 157 VFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDL 216

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAVINVMIS 320
                QV A  VK G  S++ V +A I  +S+C  +ED+ R+F+  ++  D    N M++
Sbjct: 217 HKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLA 276

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDS 379
            Y      E A +LF  M      P  +T + V+S+      +  G   H + IK G + 
Sbjct: 277 AYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEF 336

Query: 380 NAVVASSLMEMYAK--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
              +++SL+ MY K  + S+D +  IF  L+ +D VSWN+I+ G +Q+G + + L  FE 
Sbjct: 337 LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFEN 396

Query: 438 LLEEGLPPDRITLAAVLLACN 458
           +  + +  D    +AVL +C+
Sbjct: 397 MRSQYVVIDHYAFSAVLRSCS 417



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 157/302 (51%), Gaps = 3/302 (0%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H   I+SG + S +   N++I  Y K G +  A  +F    + D +SWN++I+G  N G 
Sbjct: 22  HCLAIKSGTTAS-IYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGN 80

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E AL+   SM+  G++ D Y+   ++     +  ++ G+QV ++ VK+G+  N    SA
Sbjct: 81  FETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSA 140

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D+++KC R+ED+  +F+ ++  +    N +IS Y + G    A  L   M  E +   
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200

Query: 347 EFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF- 404
           + T + +L+ +  P +    +Q H+  +K G  S+  V ++++  Y++ GSI+ +  +F 
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             ++ RDLV+WN+++     N +  E   +F E+   G  PD  T  +V+ A   G    
Sbjct: 261 GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQG 320

Query: 465 KG 466
           +G
Sbjct: 321 QG 322



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 354 LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           LS      +   S  H +AIKSG  ++   A++++  YAK G I  ++++F +  +RD V
Sbjct: 7   LSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAV 66

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SWNT++ G    G     L+  + +   G   D  +  ++L      G+V+ G  V S M
Sbjct: 67  SWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMM 126

Query: 474 KE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
            +   E  V  G    + ++D+  +  ++  A ++  ++  +   + W +++   A  GD
Sbjct: 127 VKMGYEGNVFAG----SALLDMYAKCERVEDAFEVFKSINIRNSVT-WNALISGYAQVGD 181



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 51/224 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +    + +H  + K GF  + ++ +  + +YS+ G  +D  + FD  P+
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPK 469

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+W                               NS+I GYA  G    AL++F  M
Sbjct: 470 DSSIAW-------------------------------NSLIFGYAQHGRGKIALDLFFLM 498

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           + + V+    TF  +L+  S        H  ++  G S    +  +            +I
Sbjct: 499 KDRRVKLDHITFVAVLTACS--------HIGLVEEGWSFLKSMESDYGIPPRMEHYACMI 550

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           D+ G+ G L  A  +   M  E D + W +L+  C   G  ELA
Sbjct: 551 DLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELA 594


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 296/557 (53%), Gaps = 16/557 (2%)

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           + WN  L    +   L  A KVFD +P  D +SWNS ISG    G  +    +F ++   
Sbjct: 90  VVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYES 149

Query: 142 GVRPSGFTF-SILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           G+    + F    L+TV +AC         K IH  +   G     + +GN+LI  Y + 
Sbjct: 150 GI----YQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYE-REITVGNALITSYFRC 204

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G       VF  M E ++++W ++ISG     + E +L  F  MR     P+  T    +
Sbjct: 205 GCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSL 264

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC+ L+ + +G+Q+  L  K+G   +  + SA +D++SKC  LED+ ++FE  +  D  
Sbjct: 265 MACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEV 324

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMA 372
            + V++    + GF E ++++F  M++  +      +S +L    I   +  G Q HS+ 
Sbjct: 325 SMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLI 384

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK  F SN  V + L+ MY+K G +D S +IF  + +R+ VSWN+++    ++G  +  L
Sbjct: 385 IKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRAL 444

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            ++EE+  EG+ P  +T  ++L AC + G V+KGM    +M ++YG+ P  EHYAC++D+
Sbjct: 445 QLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDM 504

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP-SPLP 551
           + +AG L +A      +P +PG  +W+++L A +I+G+ ++ +  A ++  LQ P SP P
Sbjct: 505 MGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLF-LQAPESPAP 563

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL   Y+  G+W+   R  K M+  G+ K TG SWI I+ +I++F   +  H   + I
Sbjct: 564 YILLANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRMHPHAEII 623

Query: 612 YLVLRLLTWEMEDEGCV 628
           Y VL  L   M DEG V
Sbjct: 624 YGVLGELFKLMMDEGYV 640



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 198/401 (49%), Gaps = 38/401 (9%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           +K IH  +F  G+     +GN  +  Y R G      ++FDE+ +KN ++W         
Sbjct: 175 SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTW--------- 225

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SI 152
                                  ++ISG +   + + +L++F KM+   V P+  T+ S 
Sbjct: 226 ----------------------TAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSS 263

Query: 153 LL--STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L+  S + +   G+QIHG + + G+   ++ + ++L+DMY K G L  A+ +F + EE+D
Sbjct: 264 LMACSGLQAIREGRQIHGLVWKLGVHF-DLCIESALMDMYSKCGSLEDAWKIFESAEEVD 322

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +S   ++ G   +G+ E ++  F  M  +G   D   IS ++       +L  GKQ+ +
Sbjct: 323 EVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHS 382

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L +K  F SN  V +  I+++SKC  L+DS+++F  + + +    N MI+ + R+G G  
Sbjct: 383 LIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSR 442

Query: 331 ALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLM 388
           AL+L++ M  E + PT+ T LS + +   +  VE G  F  SMA   G        + ++
Sbjct: 443 ALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVV 502

Query: 389 EMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRA 428
           +M  + G ++ + +   +L +K  ++ W  ++   + +G +
Sbjct: 503 DMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNS 543



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 200/417 (47%), Gaps = 22/417 (5%)

Query: 163 GKQIHGSMIRS-----GLSLSN----VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           G  +H S+I++     G +  N    +V+ NSL+ MY + G L  A  VF +M   D IS
Sbjct: 63  GSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTIS 122

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           WNS ISG   +G  E+    F  +  SG Y  D+ T++ V+ AC K       K + +L 
Sbjct: 123 WNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLV 182

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
              G+     V +A I  + +C       R+F+++   +      +IS   +  F E +L
Sbjct: 183 FLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESL 242

Query: 333 ELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF  M    + P   T LS +++   +  +  G Q H +  K G   +  + S+LM+MY
Sbjct: 243 KLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMY 302

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K GS++ + +IF   ++ D VS   I++GL QNG   E++ VF ++++ G+  D   ++
Sbjct: 303 SKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMIS 362

Query: 452 AVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYAC---IIDLLCQAGQLGKAIDITS 507
           A+L        +  G  + S  +K+ +G      +Y     +I++  + G L  +I I  
Sbjct: 363 AILGVFGIDTSLALGKQIHSLIIKKSFG-----SNYFVNNGLINMYSKCGDLDDSIKIFC 417

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERM-MDLQLPSPLPYSLLTQAYAMRG 563
            MP +   S W S++ A A +G+      + E M ++   P+ + +  L  A A  G
Sbjct: 418 WMPQRNSVS-WNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVG 473



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 137/307 (44%), Gaps = 37/307 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++   V+  SL+Y S L+  C   ++    + IHG ++KLG +    + +  +D+YS+ G
Sbjct: 248 MRDGPVDPNSLTYLSSLM-ACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCG 306

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           + +D                               A K+F+   E D VS   ++ G A 
Sbjct: 307 SLED-------------------------------AWKIFESAEEVDEVSMTVILVGLAQ 335

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVV 181
            G+ + ++++F KM   GV       S +L      +S   GKQIH  +I+     SN  
Sbjct: 336 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFG-SNYF 394

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N LI+MY K G L  +  +F  M + + +SWNS+I+     G G  AL  +  MR  G
Sbjct: 395 VNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEG 454

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
             P + T   +++AC  +  ++KG     +++   G        +  +D+  +   L ++
Sbjct: 455 VWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEA 514

Query: 301 VRLFEQL 307
            +  E+L
Sbjct: 515 KKFIERL 521



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 54/221 (24%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    K IH  + K  F ++ ++ N  +++YS+ G  DD +++F  +PQ+N +SWN    
Sbjct: 373 SLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWN---- 428

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                      SMI+ +A  G    AL+++ +M+L+GV P+  T
Sbjct: 429 ---------------------------SMIAAFARHGNGSRALQLYEEMRLEGVWPTDVT 461

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGVLYY 198
           F  LL     AC     H  ++  G+     +  +            ++DM G+ G+L  
Sbjct: 462 FLSLL----HAC----AHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNE 513

Query: 199 AFGVFLNM-EELDIISWNSLISGCF---NSGYGELALDQFY 235
           A      + E+  I+ W +L+  C    NS  G+ A +Q +
Sbjct: 514 AKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLF 554


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 293/532 (55%), Gaps = 6/532 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A ++F  +   DVV+WN+MI+G +  G  D A+++  +MQ +G+ P+  T   +L TV  
Sbjct: 163 AQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGE 222

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           A    HGK +HG  +R     + VV+G  L+DMY K   L YA  +F  M   + +SW++
Sbjct: 223 AKALGHGKALHGYCVRRSFD-NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 217 LISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +I G   S   + AL+ F  M       P   T+  V+ AC KL +L +G+++    +K+
Sbjct: 282 MIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL 341

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G + + ++ +  + +++KC  ++D++R F+ ++  D    + ++S   + G   VAL +F
Sbjct: 342 GXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           ++M    I P   T+  VL +   +  ++HG   H   I  GF ++ ++ ++L++MY+K 
Sbjct: 402 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 461

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G I  + E+F ++D+ D+VSWN +++G   +G   E L +F +LL  GL PD IT   +L
Sbjct: 462 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 521

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            +C++ G V +G L F AM  ++ ++P  EH  C++D+L +AG + +A      MPF+P 
Sbjct: 522 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             IW ++L A  I+ +++L E V++++  L   S   + LL+  Y+  GRW+    ++  
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 641

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  G+ K+ GCSWI I   ++ F  G+  H    +I   L  L  EM+  G
Sbjct: 642 QKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLG 693



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 245/520 (47%), Gaps = 49/520 (9%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L++ C+  KS   AK IH H  K   NA + + ++   LY                   
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLY------------------- 53

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                       L  + +  A ++FDEIP P V+ WN +I  YA  G  D A++++  M 
Sbjct: 54  ------------LSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSML 101

Query: 140 LQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             GVRP+ +T+  +L   S       G +IH      GL  S+V +  +L+D Y K G+L
Sbjct: 102 HLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLE-SDVFVCTALVDFYAKCGIL 160

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F +M   D+++WN++I+GC   G  + A+     M+  G  P+  TI  V+   
Sbjct: 161 VEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTV 220

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            + + L  GK +    V+  F +  +V +  +D+++KC  L  + ++F+ +   +    +
Sbjct: 221 GEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWS 280

Query: 317 VMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            MI  Y      + ALELF Q++L++ + PT  TL  VL +   +  +  G + H   IK
Sbjct: 281 AMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK 340

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G   + ++ ++L+ MYAK G ID +   F  ++ +D VS++ I+ G  QNG AA  L +
Sbjct: 341 LGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSI 400

Query: 435 FEELLEEGLPPDRITLAAVLLACNY-----GGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           F  +   G+ PD  T+  VL AC++      GF   G L+      +  +         +
Sbjct: 401 FRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA------L 454

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ID+  + G++  A ++ + M      S W +++    I+G
Sbjct: 455 IDMYSKCGKISFAREVFNRMDRHDIVS-WNAMIIGYGIHG 493



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 35/236 (14%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C         + +H ++ KLG      LGN  L +Y++ G  DD ++ FD +  K+ +S+
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSF 381

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           +  + G +++ N                               +  AL +F  MQL G+ 
Sbjct: 382 SAIVSGCVQNGN-------------------------------AAVALSIFRMMQLSGID 410

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +L   S +++  HG   HG +I  G + ++ ++ N+LIDMY K G + +A  
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFA-TDTLICNALIDMYSKCGKISFARE 469

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           VF  M+  DI+SWN++I G    G G  AL  F+ +   G  PD+ T   ++++C+
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 273/480 (56%), Gaps = 6/480 (1%)

Query: 138 MQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+  G  P+ FTFS +LS  ++     HG+Q+H  + + G   +N+ +G +L+DMY K  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFD-ANIFVGTALVDMYAKCA 59

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVI 253
            ++ A  VF  M E +++SWNS+I G F++   + A+  F   +R     P+E ++S V+
Sbjct: 60  DMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVL 119

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +AC  +  L+ G+QV  + VK G +  + V+++ +D++ KC   ++ V+LF+ +   D  
Sbjct: 120 SACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVV 179

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMA 372
             NV++  + +    E A   F +M RE I P E + S VL SS  +  +  G+  H   
Sbjct: 180 TWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQI 239

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK G+  N  +  SL+ MYAK GS+  + ++F  ++  +++SW  ++     +G A + +
Sbjct: 240 IKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVI 299

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           ++FE +L EG+ P  +T   VL AC++ G V++G+  F++MK+ + + PG EHYAC++DL
Sbjct: 300 ELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDL 359

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG L +A     +MP +P  S+W ++L A   YG++K+    AER+ +++  +P  Y
Sbjct: 360 LGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNY 419

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL       GR E    V+++M  NG+ K  GCSWI +KN  + F A +  H    +IY
Sbjct: 420 VLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIY 479



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 200/428 (46%), Gaps = 42/428 (9%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + +H  + K GF+A+ ++G   +D+Y++       +++FD++P++N +SWN  + G   
Sbjct: 29  GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFH 88

Query: 94  SDNLDTALKVFDEIPE-----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           ++  D A+ VF ++       P+ VS +S++S  A+ G                    G 
Sbjct: 89  NNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG--------------------GL 128

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            F            G+Q+HG +++ GL     V+ NSL+DMY K         +F  + +
Sbjct: 129 NF------------GRQVHGVVVKFGLVPLTYVM-NSLMDMYFKCRFFDEGVKLFQCVGD 175

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+++WN L+ G   +   E A + F+ MR  G  PDE + S V+++   L  L +G  +
Sbjct: 176 RDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAI 235

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K+G++ N  +L + I +++KC  L D+ ++FE ++  +      MIS Y  +G  
Sbjct: 236 HDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCA 295

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKSGFDSNAVVASS 386
              +ELF+ ML E I P+  T  CVLS+      VE G + F+SM      +      + 
Sbjct: 296 NQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYAC 355

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE-EGLP 444
           ++++  + G +D +      +  +   S W  ++    + G      +  E L E E   
Sbjct: 356 MVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYN 415

Query: 445 PDRITLAA 452
           P    L A
Sbjct: 416 PGNYVLLA 423



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 44/341 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +    +F + +HG + K G    TY+ N  +D+Y +    D+ ++LF  +  
Sbjct: 116 SSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGD 175

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++WN+ + G +++D  + A                        C Y       F  M
Sbjct: 176 RDVVTWNVLVMGFVQNDKFEEA------------------------CNY-------FWVM 204

Query: 139 QLQGVRPSGFTFSILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +G+ P   +FS +L + +S  A H G  IH  +I+ G   +  +LG SLI MY K G 
Sbjct: 205 RREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG-SLITMYAKCGS 263

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A+ VF  +E+ ++ISW ++IS     G     ++ F  M   G  P   T   V++A
Sbjct: 264 LVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSA 323

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    +++G   F    K+  ++      A  +DL  +   L+++ R  E +  +   +
Sbjct: 324 CSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPS 383

Query: 314 VINVMISTYGRYGF----GEVALELFQLMLREDIRPTEFTL 350
           V   ++    +YG      E A  LF++   E   P  + L
Sbjct: 384 VWGALLGACRKYGNLKMGREAAERLFEM---EPYNPGNYVL 421


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/531 (30%), Positives = 286/531 (53%), Gaps = 8/531 (1%)

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK 164
           D   E +V ++N++ISG+ + G+ +   E + KM+ +GV P  FTF   +         K
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK 156

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           +IHG + + GL L +V +G++L++ Y K G++ +A   F  +   D++ WN++++G    
Sbjct: 157 KIHGLLFKFGLEL-DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G  E+ L+ F  M      P  +T++  ++    + +L+ G+ +   ++K+G+ S   V 
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           ++ ID++ KC  +ED++ +FE +   D    N ++S + + G  +  L L   ML   I+
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA------VVASSLMEMYAKTGSI 397
           P   T++ VL +   +  + HG + H   I SG   +       ++ +++++MYAK GS+
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             +  +F ++  +D+ SWN ++MG   +G   E L++F  + E  L PD +T   VL AC
Sbjct: 396 RDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 455

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ GFV +G      MK +Y V P  EHY C+ID+L +AGQL +A ++  TMP +    +
Sbjct: 456 SHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV 515

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W ++L A  ++    L E  A+R+ +L+      Y L++  Y   GR+E ++ V+  MR+
Sbjct: 516 WRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQ 575

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             + K  GCSWI +KN ++ F + +  H     IY  L  LT  + + G V
Sbjct: 576 QNVRKTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEHGYV 626



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 193/398 (48%), Gaps = 46/398 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG LFK G     ++G+  ++ Y +FG                              
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGL----------------------------- 186

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++ A   F+E+P  DVV WN+M++GYA  G  +  LE F +M  + V PS FT +  L
Sbjct: 187 --MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXL 244

Query: 155 S---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S    +    +G+ IHG  ++ G   S V + NSLIDMYGK   +  A  +F  M E DI
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGYD-SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDI 303

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWNS++S     G  +  L     M  +G  PD  T++ V+ AC+ L  L  G+++   
Sbjct: 304 FSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGY 363

Query: 272 SVKVGF------LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            +  G       + + ++ +A ID+++KC  + D+  +FE++   D A  N+MI  YG +
Sbjct: 364 MIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMH 423

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA 384
           G+G  ALE+F  M    ++P E T   VLS+      V  G  F  + +KS +D    + 
Sbjct: 424 GYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF-LVQMKSKYDVAPTIE 482

Query: 385 --SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
             + +++M  + G +D + E+ + +  + + V W  ++
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALL 520


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 178/612 (29%), Positives = 314/612 (51%), Gaps = 36/612 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++   ++  +   A  +H   +KLG + + ++G+  +D YS      D   +F+ I +
Sbjct: 166 TTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVR 225

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K                               D V W +M+S Y+     + A  +FSKM
Sbjct: 226 K-------------------------------DAVVWTAMVSCYSENDCPENAFRVFSKM 254

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           ++ G +P+ F  + +L     + S   GK IHG  I++ L+ +   +G +L+DMY K G 
Sbjct: 255 RVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGD 313

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  +   D+I  + +IS    S   E A + F  +  S   P+EY++S V+ A
Sbjct: 314 IKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT +  LD GKQ+   ++K+G  S+  V +A +D ++KCN ++ S+++F  L   +    
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N ++  + + G GE AL +F  M    +  T+ T S VL +      + H  Q H    K
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEK 493

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S F+++ V+ +SL++ YAK G I  + ++F  L +RD++SWN I+ G   +G+AA+ L++
Sbjct: 494 STFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALEL 553

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+ + +  +  + IT  A+L  C+  G V+ G+ +F +M+ ++G+ P  EHY CI+ LL 
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLG 613

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L  A+     +P  P   +W ++L +  I+ +V L    AE++++++      Y L
Sbjct: 614 RAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVL 673

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA  G  + +  ++K MR  G+ KV G SW+ IK  I+ F+ G + H   + I  +
Sbjct: 674 LSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAM 733

Query: 615 LRLLTWEMEDEG 626
           L  L  +   EG
Sbjct: 734 LEWLNLKTSREG 745



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 217/446 (48%), Gaps = 38/446 (8%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT--YLGNRCLDLYSRFGTSDDVLQLFDE 75
           C++ +  C++       + +HGH+ + G       +  N  L++Y + G           
Sbjct: 62  CARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP---------- 111

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                L +A ++FD +PE ++VS+ +++  +A  G  + A  +F
Sbjct: 112 ---------------------LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF 150

Query: 136 SKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +++ +G   + F  + +L     + +A     +H    + G    N  +G+ LID Y  
Sbjct: 151 RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHD-HNAFVGSGLIDAYSL 209

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
             ++  A  VF  +   D + W +++S    +   E A   F  MR SG  P+ + ++ V
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSV 269

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   L ++  GK +   ++K    +   V  A +D+++KC  ++D+   FE +   D 
Sbjct: 270 LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDV 329

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
            +++ MIS Y +    E A ELF  ++R  + P E++LS VL +   +  ++ G Q H+ 
Sbjct: 330 ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNH 389

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK G +S+  V ++LM+ YAK   +DSS +IF  L   + VSWNTI++G +Q+G   E 
Sbjct: 390 AIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEA 449

Query: 432 LDVFEELLEEGLPPDRITLAAVLLAC 457
           L VF E+    +P  ++T ++VL AC
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRAC 475


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/535 (30%), Positives = 293/535 (54%), Gaps = 8/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFD++P P +  WN++I GY+   +   AL M+S MQL  V P  FTF  LL   S 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEELDIISW 214
             H   G+ +H  + R G   ++V + N LI +Y K   L  A  VF  L + E  I+SW
Sbjct: 132 LSHLQMGRFVHAQVFRLGFD-ADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            +++S    +G    AL+ F  MR     PD   +  V+NA T L++L +G+ + A  VK
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G      +L +   +++KC ++  +  LF+++   +  + N MIS Y + G+   A+++
Sbjct: 251 MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M+ +D+RP   +++  +S+   +  +E     +    +S +  +  ++S+L++M+AK
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            GS++ +  +F +   RD+V W+ +++G   +GRA E + ++  +   G+ P+ +T   +
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGL 430

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L+ACN+ G V +G   F+ M + + + P ++HYAC+IDLL +AG L +A ++   MP QP
Sbjct: 431 LMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G ++W ++L A   +  V+L E  A+++  +   +   Y  L+  YA    W+ +  V+ 
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            M++ G+NK  GCSW+ ++ R+  F  G+  H   ++I   +  +   +++ G V
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 171/328 (52%), Gaps = 5/328 (1%)

Query: 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           G+    F ++ L+ + +     KQIH  ++  GL  S  ++   LI      G + +A  
Sbjct: 17  GIHSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQ 74

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++    I  WN++I G   + + + AL  + +M+ +  SPD +T   ++ AC+ L +
Sbjct: 75  VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMI 319
           L  G+ V A   ++GF ++  V +  I L++KC RL  +  +FE L   +  +++   ++
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           S Y + G    ALE+F  M + D++P    L  VL++   +  ++ G   H+  +K G +
Sbjct: 195 SAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
               +  SL  MYAK G + ++  +F K+   +L+ WN ++ G  +NG A E +D+F E+
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + + + PD I++ + + AC   G +++ 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQA 342



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 198/414 (47%), Gaps = 49/414 (11%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M S ++ A V+  S ++   L+  C         + +H  +F+LGF+A  ++ N  + LY
Sbjct: 106 MYSNMQLARVSPDSFTF-PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALY 164

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD--VVSWNSM 118
           ++                        C R       L +A  VF+ +P P+  +VSW ++
Sbjct: 165 AK------------------------CRR-------LGSARTVFEGLPLPERTIVSWTAI 193

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGL 175
           +S YA  G    ALE+FS+M+   V+P       +L+    +     G+ IH S+++ GL
Sbjct: 194 VSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGL 253

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
            +   +L  SL  MY K G +  A  +F  M+  ++I WN++ISG   +GY   A+D F+
Sbjct: 254 EIEPDLL-ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M      PD  +I+  I+AC ++ +L++ + ++    +  +  +  + SA ID+F+KC 
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCG 372

Query: 296 RLEDSVRLFEQ-LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT----- 349
            +E +  +F++ LDR D  V + MI  YG +G    A+ L++ M R  + P + T     
Sbjct: 373 SVEGARLVFDRTLDR-DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           ++C  S +    V  G  F +       +      + ++++  + G +D + E+
Sbjct: 432 MACNHSGM----VREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEV 481



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 103/216 (47%), Gaps = 4/216 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   + TA  +FD++  P+++ WN+MISGYA  GY+  A++MF +M  + VRP   + + 
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +S    V S    + ++  + RS     +V + ++LIDM+ K G +  A  VF    + 
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ W+++I G    G    A+  + +M   G  P++ T   ++ AC     + +G   F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
                          +  IDL  +   L+ +  + +
Sbjct: 448 NRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIK 483


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/532 (32%), Positives = 297/532 (55%), Gaps = 8/532 (1%)

Query: 104 FDEIPEPDVVSWNSMISGYASC-GYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSS 159
           F  I +P   S+N MI G ++    S  ALE +S+M+  G++P+  T+  L    S + +
Sbjct: 83  FSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
             +G+  H S+IR GL     V  +SLI MY + G +  A  VF  + + D++SWNS+IS
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHV-SHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMIS 201

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G     +   A+  F  M  +G+ P+E ++  V+ AC +L +L  G  V    V+     
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           N  + SA I ++ KC  L  + R+F+ + + D    N MI+ Y + G  E A++LFQ M 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 340 REDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                P + TL  +LS+   I  ++ G Q    A + GF  +  V ++L++MYAK GS+D
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVLLA 456
           ++  +F  + K++ VSWN ++  L  +G+A E L +F+ ++ EG  + P+ IT   VL A
Sbjct: 382 NAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSA 441

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C + G VD+G  +F  M   +G++P  EHY+C++DL  +AG L +A D   TMP +P   
Sbjct: 442 CVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           I  ++L A     ++ ++E V + +++L+  +   Y + ++ YA   RW+   R++ +M+
Sbjct: 502 ILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMK 561

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G++K  GCSWI I ++++ F+AG++ H    +I+ +L LL  ++  EG +
Sbjct: 562 QKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYI 613



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 193/353 (54%), Gaps = 21/353 (5%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVFDEI + D+VSWNSMISGY+   ++  A+ +F +M   G +P+  +    L +V  
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS----LVSVLG 236

Query: 160 ACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           AC        G  +   ++ + ++L N  +G++LI MYGK G L  A  +F +M++ D +
Sbjct: 237 ACGELGDLKLGTWVEEFVVENKMTL-NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKV 295

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +WN++I+G   +G  E A+  F  MR S  +PD+ T+  +++AC  +  LD GKQV   +
Sbjct: 296 TWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYA 355

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            + GF  +  V +A +D+++KC  L+++ R+F  + + +    N MIS    +G  + AL
Sbjct: 356 SERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEAL 415

Query: 333 ELFQLMLRE--DIRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSMAIKSGFDSNAVVASSLM 388
            LF+ M+ E   + P + T   VLS+ +    V+ G + FH M+   G        S ++
Sbjct: 416 ALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMV 475

Query: 389 EMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
           +++++ G ++ + +  + + +K D V    I+  L    +  + +D+ E +++
Sbjct: 476 DLFSRAGHLEEAWDFVMTMPEKPDEV----ILGALLGACQKRKNIDISERVMK 524



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 16/228 (7%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +L +A ++FD + + D V+WN+MI+GYA  G S+ A+++F  M++    P   T   
Sbjct: 275 KCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIG 334

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +LS  +S      GKQ+       G    +V +G +L+DMY K G L  AF VF  M + 
Sbjct: 335 ILSACASIGALDLGKQVEIYASERGFQ-DDVYVGTALVDMYAKCGSLDNAFRVFYGMPKK 393

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISIVINACTKLRNLDKGKQ 267
           + +SWN++IS     G  + AL  F SM   G   SP++ T   V++AC     +D+G++
Sbjct: 394 NEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRR 453

Query: 268 VF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +F  +S   G +      S  +DLFS+   LE++         WD+ +
Sbjct: 454 LFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA---------WDFVM 492



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 65/285 (22%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + D  K +  +  + GF    Y+G   +D+Y++ G+ D+  ++F  +P+KN
Sbjct: 335 ILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKN 394

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               N+MIS  A  G +  AL +F  M  
Sbjct: 395 EVSW-------------------------------NAMISALAFHGQAQEALALFKSMMN 423

Query: 141 QG--VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           +G  V P+  TF  +L    SAC    +H  ++  G  L                 ++  
Sbjct: 424 EGGTVSPNDITFVGVL----SAC----VHAGLVDEGRRL---------------FHMMSS 460

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +FG+   +E      ++ ++     +G+ E A D   +M      PDE  +  ++ AC K
Sbjct: 461 SFGLVPKIEH-----YSCMVDLFSRAGHLEEAWDFVMTM---PEKPDEVILGALLGACQK 512

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            +N+D  ++V  L +++   SNS     +  L++   R +DS R+
Sbjct: 513 RKNIDISERVMKLLLELE-PSNSGNYVISSKLYANLRRWDDSARM 556


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/538 (32%), Positives = 289/538 (53%), Gaps = 6/538 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K +  + A+ +F+E+PE DV  WN++IS Y   G    ALE F  M+  G  P+  T + 
Sbjct: 153 KCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITT 212

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +S+ +       G +IH  +I SG  L + +  ++L+DMYGK G L  A  VF  M + 
Sbjct: 213 AISSCARLLDLNRGMEIHEELINSGFLLDSFI-SSALVDMYGKCGHLEMAIEVFEQMPKK 271

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            +++WNS+ISG    G     +  F  M   G  P   T+S +I  C++   L +GK V 
Sbjct: 272 TVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             +++    S+  + S+ +DL+ KC ++E +  +F+ + +      NVMIS Y   G   
Sbjct: 332 GYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLF 391

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF  M +  + P   T + VL++   +  +E G + H++ I+   D+N VV  +L+
Sbjct: 392 EALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALL 451

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G++D +  +F  L KRDLVSW +++     +G+A   L++F E+L+  + PDR+
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV 511

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A+L AC + G VD+G   F+ M   YG++P  EHY+C+IDLL +AG+L +A +I   
Sbjct: 512 TFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 509 MP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            P  +    +  ++  A  ++ ++ L   +A  ++D        Y LL+  YA   +W+ 
Sbjct: 572 NPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDE 631

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  V+  M++ G+ K  GCSWI I  +I  F   +  H   + ++  L  L+  MEDE
Sbjct: 632 VRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE 689



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 146/528 (27%), Positives = 254/528 (48%), Gaps = 40/528 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C++ KS    K IH  +  LG     +L    ++LY                    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLY-------------------- 48

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVS-WNSMISGYASCGYSDYALEMFSKM- 138
                      L     D A  VFD +  P  +S WN +++GY        ALE+F K+ 
Sbjct: 49  -----------LSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLL 97

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               ++P  +T+  +L           GK IH  ++++GL + ++V+G+SL+ MY K   
Sbjct: 98  HYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMM-DIVVGSSLVGMYAKCNA 156

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  +F  M E D+  WN++IS  + SG  + AL+ F  MR  G+ P+  TI+  I++
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISS 216

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C +L +L++G ++    +  GFL +S + SA +D++ KC  LE ++ +FEQ+ +      
Sbjct: 217 CARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAW 276

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC-VLSSIPIPPVEHGSQFHSMAIK 374
           N MIS YG  G     ++LF+ M  E ++PT  TLS  ++       +  G   H   I+
Sbjct: 277 NSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIR 336

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +   S+  + SSLM++Y K G ++ +  IF  + K  +VSWN ++ G    G+  E L +
Sbjct: 337 NRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGL 396

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F E+ +  + PD IT  +VL AC+    ++KG  + + + E+  +   E     ++D+  
Sbjct: 397 FSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK-KLDNNEVVMGALLDMYA 455

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           + G + +A  +   +P +   S W S++ A   +G   +   +   M+
Sbjct: 456 KCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSHGQAYVALELFAEML 502



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 36/299 (12%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K +L+  S LI  C         K +HG+  +    +  ++ +  +DLY + G  +    
Sbjct: 305 KPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAEN 364

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  IP+   +SWN+ + G +    L  AL +F E                         
Sbjct: 365 IFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSE------------------------- 399

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
                 M+   V P   TF+ +L+  S       G++IH  +I   L  + VV+G +L+D
Sbjct: 400 ------MRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMG-ALLD 452

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  AF VF  + + D++SW S+I+   + G   +AL+ F  M  S   PD  T
Sbjct: 453 MYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVT 512

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
              +++AC     +D+G   F   V V G +      S  IDL  +  RL ++  + +Q
Sbjct: 513 FLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 311/611 (50%), Gaps = 47/611 (7%)

Query: 27   SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
            S  + ++ K +H H  + GF +   +GN  + +Y++ G+ DD                  
Sbjct: 435  STSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD------------------ 476

Query: 87   CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                         A  VFD + + DV+SWN+M+ G A  G    A  +F +MQ +G+ P 
Sbjct: 477  -------------ARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPD 523

Query: 147  GFTFSILLSTVSSACHG--------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
              T+  LL+T     HG         ++H   + +GL +S+  +G++ I MY + G +  
Sbjct: 524  STTYLSLLNT-----HGSTDALEWVNEVHKHAVETGL-ISDFRVGSAFIHMYIRCGSIDD 577

Query: 199  AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            A  +F  +    + +WN++I G      G  AL  F  M+  G+ PD  T   +++A   
Sbjct: 578  ARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVD 637

Query: 259  LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
               L+  K+V + +   G L +  V +A +  +SKC  ++ + ++F+ +   +     +M
Sbjct: 638  EEALEWVKEVHSHATDAG-LVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMM 696

Query: 319  ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
            I    ++G G  A   F  MLRE I P   T   +LS+      +E   + H+ A+ +G 
Sbjct: 697  IGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGL 756

Query: 378  DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
             S+  V ++L+ MYAK GSID +  +F  + +RD+ SW  ++ GL Q+GR  E LD F +
Sbjct: 757  VSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVK 816

Query: 438  LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
            +  EG  P+  +  AVL AC++ G VD+G   F +M ++YG+ P  EHY C++DLL +AG
Sbjct: 817  MKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAG 876

Query: 498  QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
             L +A      MP +P  + W ++L A   YG++++ E  A+  + L+  S   Y LL+ 
Sbjct: 877  LLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSN 936

Query: 558  AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
             YA  G+WE  + V+ +M++ GI K  G SWI + NRI++F  G+  H   ++IY  L  
Sbjct: 937  IYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLND 996

Query: 618  LTWEMEDEGCV 628
            L   ++ +G V
Sbjct: 997  LIERLKAKGYV 1007



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 224/450 (49%), Gaps = 45/450 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S SY + ++ RCL  +    AK +H  + K G   + Y+ N+ L +Y R G         
Sbjct: 118 SFSYVN-ILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCG--------- 167

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                  L  A +VFD++ + ++  W +MI GYA  G+++ A+ 
Sbjct: 168 ----------------------RLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMR 205

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           ++ KM+ +  +P+  T+   LS + + C       GK+IH  +I+SG   S+V +  +L+
Sbjct: 206 VYDKMRQECGQPNEITY---LSILKACCCPVNLKWGKKIHAHIIQSGFQ-SDVRVETALV 261

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           +MY K G +  A  +F  M E ++ISW  +I G  + G G+ A   F  M+  G+ P+ Y
Sbjct: 262 NMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSY 321

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T   ++NA      L+  K+V + +V  G   +  V +A + +++K   ++D+  +F+ +
Sbjct: 322 TYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM 381

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP---PVEH 364
              D     VMI    ++G G+ A  LF  M R    P   T   +L++  I     +E 
Sbjct: 382 TERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEW 441

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
               H  A ++GF S+  + ++L+ MYAK GSID +  +F  +  RD++SWN +M GL Q
Sbjct: 442 VKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQ 501

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           NG   E   VF ++ +EGL PD  T  ++L
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDSTTYLSLL 531



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 215/457 (47%), Gaps = 40/457 (8%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S +Y S +++   S  + ++ K +H H    G      +GN  + +Y++ G+ DD     
Sbjct: 320 SYTYVS-ILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD----- 373

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                     A  VFD + E D+ SW  MI G A  G    A  
Sbjct: 374 --------------------------ARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFS 407

Query: 134 MFSKMQLQGVRPSGFTF-SIL----LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLID 188
           +F +MQ  G  P+  T+ SIL    +++ S+    K +H     +G  +S++ +GN+LI 
Sbjct: 408 LFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGF-ISDLRIGNALIH 466

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  VF  M + D+ISWN+++ G   +G G  A   F  M+  G  PD  T
Sbjct: 467 MYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTT 526

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              ++N       L+   +V   +V+ G +S+  V SA I ++ +C  ++D+  LF++L 
Sbjct: 527 YLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLS 586

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ 367
                  N MI    +   G  AL LF  M RE   P   T   +LS+ +    +E   +
Sbjct: 587 VRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKE 646

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS A  +G   +  V ++L+  Y+K G++  + ++F  + +R++ +W  ++ GL Q+G 
Sbjct: 647 VHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGC 705

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             +    F ++L EG+ PD  T  ++L AC   G ++
Sbjct: 706 GHDAFSHFLQMLREGIVPDATTYVSILSACASTGALE 742



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 156/295 (52%), Gaps = 2/295 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            KQ+H  +I+SG+   N+ + N L+ +Y + G L  A  VF  + + +I  W ++I G  
Sbjct: 137 AKQVHVCIIKSGME-QNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYA 195

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G+ E A+  +  MR     P+E T   ++ AC    NL  GK++ A  ++ GF S+  
Sbjct: 196 EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVR 255

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A ++++ KC  +ED+  +F+++   +     VMI     YG G+ A  LF  M RE 
Sbjct: 256 VETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREG 315

Query: 343 IRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
             P  +T   +L ++     +E   + HS A+ +G   +  V ++L+ MYAK+GSID + 
Sbjct: 316 FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDAR 375

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            +F  + +RD+ SW  ++ GL Q+GR  E   +F ++   G  P+  T  ++L A
Sbjct: 376 VVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 102/238 (42%), Gaps = 37/238 (15%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + ++ K +H H    G  +   +GN  + +Y++ G+ DD   +FD++ +++
Sbjct: 731 ILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERD 790

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             SW +                               MI G A  G    AL+ F KM+ 
Sbjct: 791 VFSWTV-------------------------------MIGGLAQHGRGLEALDFFVKMKS 819

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G +P+G+++  +L+  S A     G++   SM +       +     ++D+ G+ G+L 
Sbjct: 820 EGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLE 879

Query: 198 YAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            A    LNM  E D   W +L+  C    YG L + +F +       P   +  ++++
Sbjct: 880 EAELFILNMPIEPDDAPWGALLGACVT--YGNLEMAEFAAKERLKLKPKSASTYVLLS 935



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+ + ++ +++ I    F+   +L   +    +    Q H   IKSG + N  VA+ L+ 
Sbjct: 102 AVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLR 161

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           +Y + G +  + ++F KL K+++  W T++ G  + G A + + V++++ +E   P+ IT
Sbjct: 162 VYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEIT 221

Query: 450 LAAVLLAC 457
             ++L AC
Sbjct: 222 YLSILKAC 229


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/540 (32%), Positives = 285/540 (52%), Gaps = 7/540 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D  ++A  +    P   VV+W ++I+G    G    AL  FS M+   ++P+ FTF  
Sbjct: 54  KLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPC 113

Query: 153 LLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
                 ++ S   GKQ+H   +++G  +S+V +G S  DMY K G+   A  +F  M E 
Sbjct: 114 AFKASGSLRSPLVGKQVHALAVKAG-QISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER 172

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +I +WN+ +S     G  + AL  F   R+ G+ P+  T    +NAC     L  G+Q+ 
Sbjct: 173 NIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLH 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              ++ GF ++  V +  ID + KC+++  S  +F  + + +      MI +Y +    E
Sbjct: 233 GFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEE 292

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  +F    +E I PT+F +S VLS+   +  +E G   H++A+K+    N  V S+L+
Sbjct: 293 KACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALV 352

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL--EEGLPPD 446
           +MY K GSI+ +   F ++ +R+LV+WN ++ G    G+A   + +F+E+      + P+
Sbjct: 353 DMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPN 412

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T   VL AC+  G V+ GM +F +M+  YG+ PG EHYAC++DLL +AG + +A    
Sbjct: 413 YVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFI 472

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP +P  S+W ++L AS ++G  +L +  A+ + +L       + LL+  +A  GRWE
Sbjct: 473 KKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWE 532

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V+K M+  GI K  GCSWI   N ++ F A +  H    +I  +L  L  EME  G
Sbjct: 533 EATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAG 592



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 195/416 (46%), Gaps = 45/416 (10%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S +S    K +H    K G  +  ++G    D+YS+ G +++  ++FDE+P++N  +WN 
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
            L                           NS++ G     Y D AL  F + + +G  P+
Sbjct: 180 YLS--------------------------NSVLEGR----YDD-ALTAFIEFRHEGWEPN 208

Query: 147 GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             TF   L+  + A +   G+Q+HG +++SG   ++V + N LID YGK   +  +  +F
Sbjct: 209 LITFCAFLNACAGASYLRLGRQLHGFVLQSGFE-ADVSVANGLIDFYGKCHQVGCSEIIF 267

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             + + + +SW S+I     +   E A   F   R  G  P ++ +S V++AC  L  L+
Sbjct: 268 SGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLE 327

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GK V  L+VK   + N  V SA +D++ KC  +ED+ R F+++   +    N MI  Y 
Sbjct: 328 VGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYA 387

Query: 324 RYGFGEVALELFQLML--REDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDS 379
             G  ++A+ LF  M      + P   T  CVLS+      V  G + F SM  + G + 
Sbjct: 388 HQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEP 447

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI-----MMGLTQNGRAA 429
            A   + ++++  + G ++ + +   K+  R  VS W  +     M G ++ G+ A
Sbjct: 448 GAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVA 503



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 157/338 (46%), Gaps = 52/338 (15%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +++C+  ++ C         + +HG + + GF A   + N  +D Y              
Sbjct: 210 ITFCA-FLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYG------------- 255

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                             K   +  +  +F  I +P+ VSW SMI  Y      + A  +
Sbjct: 256 ------------------KCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLV 297

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLI 187
           F + + +G+ P+ F    ++S+V SAC        GK +H   +++ + + N+ +G++L+
Sbjct: 298 FLRARKEGIEPTDF----MVSSVLSACAGLSVLEVGKSVHTLAVKACV-VGNIFVGSALV 352

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY--SPD 245
           DMYGK G +  A   F  M E ++++WN++I G  + G  ++A+  F  M    +  +P+
Sbjct: 353 DMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPN 412

Query: 246 EYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
             T   V++AC++  +++ G ++F ++  + G    +   +  +DL  +   +E + +  
Sbjct: 413 YVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFI 472

Query: 305 EQLD-RWDYAVINVMIST---YGRYGFGEVALE-LFQL 337
           +++  R   +V   ++     +G+   G+VA + LF+L
Sbjct: 473 KKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFEL 510



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 13/203 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +  K++H    K     + ++G+  +D+Y + G+ +D  + FDE+P+
Sbjct: 314 SSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPE 373

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP------EPDVVSWNSMISGYASCGYSDYAL 132
           +N ++WN  + G       D A+ +FDE+        P+ V++  ++S  +  G  +  +
Sbjct: 374 RNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGM 433

Query: 133 EMFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLGNSLI 187
           E+F  M+ + G+ P    ++ ++  +  A   +Q    I    IR  +S+   +LG S  
Sbjct: 434 EIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGAS-- 491

Query: 188 DMYGKLGVLYYAFGVFLNMEELD 210
            M+GK  +   A      ++ LD
Sbjct: 492 KMFGKSELGKVAADNLFELDPLD 514


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 185/580 (31%), Positives = 301/580 (51%), Gaps = 42/580 (7%)

Query: 90  GLLKSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
            L  S +L  AL +F  I    P++  WN++I  ++       +L +FS+M   G+ P+ 
Sbjct: 68  ALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNS 127

Query: 148 FTFSILLSTV--SSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            TF  L  +   S A H  KQ+H   ++  L L   V   SLI MY ++G L +A  VF 
Sbjct: 128 HTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHV-HTSLIHMYSQVGELRHARLVFD 186

Query: 205 N-------------------------------MEELDIISWNSLISGCFNSGYGELALDQ 233
                                           +   D++SWN++I+G   SG  E AL  
Sbjct: 187 KSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALAC 246

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M+ +  SP++ T+  V++AC  LR+L+ GK + +     GF  N  +++A +D++SK
Sbjct: 247 FTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSK 306

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  +  + +LF+ ++  D  + N MI  Y      E AL LF++MLRE++ P + T   V
Sbjct: 307 CGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAV 366

Query: 354 LSSIP-IPPVEHGSQFHSMAIK----SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L +   +  ++ G   H+   K    +G  +N  + +S++ MYAK G ++ + ++F  + 
Sbjct: 367 LPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMG 426

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
            R L SWN ++ GL  NG A   L +FEE++ EG  PD IT   VL AC   GFV+ G  
Sbjct: 427 SRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHR 486

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            FS+M ++YG+ P  +HY C+IDLL ++G+  +A  +   M  +P  +IW S+L A  I+
Sbjct: 487 YFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIH 546

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           G V+  E VAER+ +L+  +   Y LL+  YA  GRW+ + +++  +   G+ KV GC+ 
Sbjct: 547 GQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTS 606

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           I I   ++ F  G+  H   + I+ +L  +   +E+ G V
Sbjct: 607 IEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFV 646


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 303/599 (50%), Gaps = 39/599 (6%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D  + +H  + K+G+    Y G+  LD+Y+                              
Sbjct: 119 DLGQQVHSLIVKIGYEQSVYAGSALLDMYA------------------------------ 148

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
            K + ++ A  VF  +P  + VSWN++I G+   G  D A  +   MQ +GVR    TF+
Sbjct: 149 -KCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFA 207

Query: 152 ILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN-ME 207
            LL+ +      K   Q+H  +I+ GL   N  L N+ +  Y + G+L  A  VF   + 
Sbjct: 208 PLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNA-LCNATLTAYSECGLLEDAKRVFDGAVG 266

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D+++WNS++         E A + F  M+  G+ PD YT + VI+AC    + + GK 
Sbjct: 267 TRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKS 326

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNR--LEDSVRLFEQLDRWDYAVINVMISTYGRY 325
             AL +K G   +  + +A I ++ K N   +E ++ LF  +   D    N +++ + + 
Sbjct: 327 FHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQM 386

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           GF E AL+LF  M        ++  S VL S   +  ++ G Q H + +K+GFDSN  VA
Sbjct: 387 GFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVA 446

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           SSL+ MY+K G I+ + + F    K   ++WN+IM    Q+G+    LD+F  + E  + 
Sbjct: 447 SSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVK 506

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D +T  AVL AC++ G V++G  V  +M+ +YG+ P  EHYAC +DL  +AG L +A  
Sbjct: 507 LDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKA 566

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +  +MPFQP   + +++L A    G+++L   VA ++++++      Y +L+  Y    R
Sbjct: 567 LIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKR 626

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           W+    V ++MR+  + KV G SWI +KN ++ F A +  H   + +Y +L  L  EM+
Sbjct: 627 WDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILGELMEEMK 685



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 201/428 (46%), Gaps = 37/428 (8%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H   FK G  +H Y+ N  L  YS+                        C  G     +L
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSK------------------------CFSG-----DL 52

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           + A K+FDE+P  D V+WN+MI+GY   G    A E    M+ +G +  G+TF  +L  V
Sbjct: 53  NLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGV 112

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + AC    G+Q+H  +++ G   S V  G++L+DMY K   +  A+ VF  M   + +SW
Sbjct: 113 AHACRHDLGQQVHSLIVKIGYEQS-VYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSW 171

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N+LI G    G  + A      M+  G   ++ T + ++      +      Q+    +K
Sbjct: 172 NALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIK 231

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAVINVMISTYGRYGFGEVALE 333
            G    + + +AT+  +S+C  LED+ R+F+  +   D    N M+  Y  +   E A  
Sbjct: 232 HGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFN 291

Query: 334 LFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF  M      P  +T +CV+S+        +G  FH++ IK G + +  + ++L+ MY 
Sbjct: 292 LFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYL 351

Query: 393 K--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           K    S++++  +F  +  +D VSWN+I+ G +Q G + + L +F  +       D    
Sbjct: 352 KLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAY 411

Query: 451 AAVLLACN 458
           +AVL +C+
Sbjct: 412 SAVLRSCS 419



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 163/345 (47%), Gaps = 41/345 (11%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD-EIPQKNCISWNIC 87
           K +     +H  + K G   +  L N  L  YS  G  +D  ++FD  +  ++ ++WN  
Sbjct: 217 KFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSM 276

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           L   L  D  + A  +F E+     EPD+ ++  +IS   +  + +Y             
Sbjct: 277 LVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNY------------- 323

Query: 144 RPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG--VLYYAFG 201
                              GK  H  +I+ GL  S V + N+LI MY KL    +  A  
Sbjct: 324 -------------------GKSFHALVIKRGLEES-VTICNALITMYLKLNNKSMEAALN 363

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F +M+  D +SWNS+++G    G+ E AL  F  MR S    D+Y  S V+ +C+ L  
Sbjct: 364 LFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAI 423

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G+Q+  L+VK GF SN  V S+ I ++SKC  +ED+ + FE   +      N ++  
Sbjct: 424 LQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFA 483

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
           Y ++G G+VAL+LF +M   +++    T   VL++   +  VE G
Sbjct: 484 YAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQG 528



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 151/304 (49%), Gaps = 11/304 (3%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKL--GVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           H    +SG+ +S++ + N+++  Y K   G L  A  +F  M   D ++WN++I+G   S
Sbjct: 22  HCQAFKSGI-ISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVES 80

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G    A +   SM+  G+  D YT   ++         D G+QV +L VK+G+  +    
Sbjct: 81  GNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAG 140

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           SA +D+++KC R+ED+  +F+ +   ++   N +I  + + G  + A  L   M +E +R
Sbjct: 141 SALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR 200

Query: 345 PTEFTLSCVLSSIPIPPVEHGS-QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
             + T + +L+ +        + Q H   IK G +    + ++ +  Y++ G ++ +  +
Sbjct: 201 VEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRV 260

Query: 404 FV-KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC----- 457
           F   +  RDLV+WN++++    + +  +  ++F E+   G  PD  T   V+ AC     
Sbjct: 261 FDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAH 320

Query: 458 -NYG 460
            NYG
Sbjct: 321 KNYG 324



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 10/167 (5%)

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAK--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           H  A KSG  S+  VA++++  Y+K  +G ++ + ++F ++  +D V+WNT++ G  ++G
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGE 483
                 +  + +   G   D  T  ++L    +    D G  V S + +   E  V  G 
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAG- 140

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
              + ++D+  +  ++  A D+   MP +   S W +++      GD
Sbjct: 141 ---SALLDMYAKCERVEDAYDVFQGMPVRNFVS-WNALIDGFVQVGD 183



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 35/216 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C         + IH    K GF+++ ++ +  + +YS+ G  +D  + F++  +
Sbjct: 412 SAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTK 471

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ I+W                               NS++  YA  G  D AL++FS M
Sbjct: 472 ESSITW-------------------------------NSIMFAYAQHGQGDVALDLFSIM 500

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + + V+    TF  +L+  S       G+ +  SM         +      +D++G+ G 
Sbjct: 501 REREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGY 560

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           L  A  +  +M  + + +   +L+  C   G  ELA
Sbjct: 561 LEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELA 596


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 307/623 (49%), Gaps = 44/623 (7%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + +   C    +F     +HGH  K  F   + +G   LD+Y++        ++F
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAK------CERMF 291

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           D                         A KVF+ +P P   S+N++I GYA       AL+
Sbjct: 292 D-------------------------AWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALD 326

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSL 186
           +F  +Q   +   GF   I LS   +AC        G Q+HG  ++ GL   N+ + N++
Sbjct: 327 IFQSLQRNNL---GFD-EISLSGALTACSVIKRHLEGIQLHGLAVKCGLGF-NICVANTI 381

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMYGK G L  A  +F  ME  D +SWN++I+    +      L  F SM  S   PD+
Sbjct: 382 LDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDD 441

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           +T   V+ AC   + L+ G ++    +K G   +  V SA +D++ KC  L ++ ++  +
Sbjct: 442 FTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHAR 501

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
           L+       N +IS +      E A   F  ML   I P  +T + VL     +  +E G
Sbjct: 502 LEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELG 561

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  +K    S+  +AS+L++MY+K G++  S  +F K  KRD V+W+ ++     +
Sbjct: 562 KQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYH 621

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   + +++FEE+    + P+     +VL AC + G+VDKG+  F  M   YG+ P  EH
Sbjct: 622 GLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEH 681

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y+C++DLL ++GQ+ +A+ +  +MPF+    IW ++L    + G+V++ E     ++ L 
Sbjct: 682 YSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLD 741

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                 Y LL   YA+ G W  + +++ +M+   + K  GCSWI +++ ++TF  G+  H
Sbjct: 742 PQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAH 801

Query: 606 HGGQKIYLVLRLLTWEMEDEGCV 628
              ++IY    LL  EM+  G V
Sbjct: 802 PRSEEIYEQTHLLVDEMKWAGYV 824



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 158/532 (29%), Positives = 272/532 (51%), Gaps = 23/532 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++ +C + K+ +  K +H  +   GF    Y+ N  L  Y +    +   ++FD +PQ
Sbjct: 10  SHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQ 69

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ISWN  + G     N+  A  +FD +PE DVVSWNS++S Y   G +  ++E+F +M
Sbjct: 70  RDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRM 129

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   +     TF+++L   S +     G Q+H   I+ G   ++VV G++L+DMY K   
Sbjct: 130 RSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFE-NDVVTGSALVDMYSKCKK 188

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  AF VF  M E +++ W+++I+G   +      L  F  M   G    + T + V  +
Sbjct: 189 LDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRS 248

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L     G Q+   ++K  F  +SI+ +AT+D+++KC R+ D+ ++F  L        
Sbjct: 249 CAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSY 308

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIK 374
           N +I  Y R   G  AL++FQ + R ++   E +LS  L++  +      G Q H +A+K
Sbjct: 309 NAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVK 368

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G   N  VA+++++MY K G++  +  IF ++++RD VSWN I+    QN    +TL +
Sbjct: 369 CGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSL 428

Query: 435 FEELLEEGLPPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
           F  +L   + PD  T  +V+ AC      NYG  +  G ++ S M  ++ V       + 
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEI-HGRIIKSGMGLDWFVG------SA 481

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           ++D+  + G L +A  I + +  +   S W SI+     +   K +EN A+R
Sbjct: 482 LVDMYGKCGMLMEAEKIHARLEEKTTVS-WNSIISG---FSSQKQSEN-AQR 528



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 139/304 (45%), Gaps = 45/304 (14%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S ++  C+ L+ L+ GKQV    +  GF+    V +  +  + K +++  + ++F+++
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS------------ 355
            + D    N +I  Y   G    A  LF  M   D+      LSC L             
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 356 ---SIPIPP--------------VEH---GSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
              S+ IP               +E    G Q H +AI+ GF+++ V  S+L++MY+K  
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +D +  +F ++ +R+LV W+ ++ G  QN R  E L +F+++L+ G+   + T A+V  
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 456 ACNYGGFVDKGMLVFSAMKEEYG-VMPGEEHYACII-----DLLCQAGQLGKAIDITSTM 509
           +C        G+  F    + +G  +  +  Y  II     D+  +  ++  A  + +T+
Sbjct: 248 SC-------AGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTL 300

Query: 510 PFQP 513
           P  P
Sbjct: 301 PNPP 304


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 169/572 (29%), Positives = 295/572 (51%), Gaps = 37/572 (6%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
             HG   KLG      + +  LD+YS+ G   +   LFD                     
Sbjct: 320 VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD--------------------- 358

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILL 154
                        E +V+SWNSMI GY+       A E+  KMQ++  V+ +  T   +L
Sbjct: 359 -----------TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL 407

Query: 155 STVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                       K+IHG  +R G   S+ ++ N+ +  Y K G L+YA GVF  ME   +
Sbjct: 408 PVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMV 467

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWN+LI G   +G+   ALD +  MR SG  PD +TI+ +++AC +L++L  GK++   
Sbjct: 468 SSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGS 527

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            ++ GF  +  +  + + L+ +C ++  +   F+ ++  +    N MI+ + +  F   A
Sbjct: 528 MLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDA 587

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L++F  ML   I P E ++   L +   +  +  G + H  A+KS    ++ V  SL++M
Sbjct: 588 LDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDM 647

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G ++ S  IF ++  +  V+WN ++ G   +G   + +++F+ +   G  PD +T 
Sbjct: 648 YAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTF 707

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            A+L ACN+ G V +G+     M+  +G+ P  EHYAC++D+L +AG+L +A+++ + +P
Sbjct: 708 IALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELP 767

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P   IW S+L +   Y D+ + E VA ++++L       Y L++  YA  G+W+ + +
Sbjct: 768 DKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRK 827

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           +++ M++ G+ K  GCSWI I  ++  F  G+
Sbjct: 828 MRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGD 859



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 207/451 (45%), Gaps = 51/451 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHL-FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+  C  +K+ +  + IH  +     F     L  R + +YS   +  D   +F+   +K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N   WN  L G L++     A+ VF E           MIS                   
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVE-----------MIS------------------- 188

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           L    P  FT   ++     V     G+ +HG  +++ + LS+V +GN+LI MYGK G +
Sbjct: 189 LTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKV-LSDVFVGNALIAMYGKFGFV 247

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY--SGYSPDEYTISIVIN 254
             A  VF  M + +++SWNS++  C  +G  E +   F  +     G  PD  T+  VI 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            C +   +  G     L++K+G      V S+ +D++SKC  L ++  LF+  ++ +   
Sbjct: 308 LCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNEK-NVIS 366

Query: 315 INVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQF----- 368
            N MI  Y +      A EL + M  ED ++  E TL  VL     P  E   QF     
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL-----PVCEEEIQFLKLKE 421

Query: 369 -HSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
            H  A++ GF  S+ +VA++ +  YAK GS+  +  +F  ++ + + SWN ++ G  QNG
Sbjct: 422 IHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNG 481

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
              + LD++  +   GL PD  T+A++L AC
Sbjct: 482 FPRKALDLYLLMRGSGLEPDLFTIASLLSAC 512



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLE 298
           S  S  +  I +++  C + +N++ G+++   +S    F ++ ++++  + ++S C+   
Sbjct: 87  SSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPY 146

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSS- 356
           DS  +F    R +  + N ++S Y R      A+ +F  M+   +  P  FTL CV+ + 
Sbjct: 147 DSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC 206

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
           + +  V  G   H  A+K+   S+  V ++L+ MY K G ++S+ ++F K+ +R+LVSWN
Sbjct: 207 VGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWN 266

Query: 417 TIMMGLTQNGRAAETLDVFEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           ++M    +NG   E+  +F+ LL  +EGL PD  T+  V+  C   G V  GM VF  + 
Sbjct: 267 SVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLA 325

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKA 502
            + G+    +  + ++D+  + G L +A
Sbjct: 326 LKLGLCGELKVNSSLLDMYSKCGYLCEA 353



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 138/318 (43%), Gaps = 49/318 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C   KS    K IHG + + GF    ++    + LY + G        FD + +
Sbjct: 506 ASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEE 565

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + W                               N+MI+G++   +   AL+MF +M
Sbjct: 566 KNLVCW-------------------------------NTMINGFSQNEFPFDALDMFHQM 594

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               + P   +    L   S VS+   GK++H   ++S L+  + V   SLIDMY K G 
Sbjct: 595 LSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTC-SLIDMYAKCGC 653

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  +  +F  +     ++WN LI+G    G+G  A++ F SM+ +G+ PD  T   ++ A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 256 CTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL- 307
           C         L  L + + +F +  K+         +  +D+  +  RL +++ L  +L 
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPKLEH------YACVVDMLGRAGRLNEALELVNELP 767

Query: 308 DRWDYAVINVMISTYGRY 325
           D+ D  + + ++S+   Y
Sbjct: 768 DKPDSRIWSSLLSSCRNY 785


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 182/627 (29%), Positives = 314/627 (50%), Gaps = 47/627 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   KS    K +H  +          LG + +  Y+  G   +  ++FD + +KN   W
Sbjct: 109 CAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLW 168

Query: 85  N---------------ICLRGLLKSDNLD-----TALKVFDEIPEPDVVSWNSMISGYAS 124
           N               ICL  ++    ++     +A ++FD++ + DV+SWNSMISGY S
Sbjct: 169 NFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVS 228

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFT-FSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVV 181
            G ++  L ++ +M   G+     T  S+L+   +S     GK +H   I+S      + 
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE-RRIN 287

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             N+L+DMY K G L  A  VF  M E +++SW S+I+G    G+ + A+     M   G
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 347

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D   I+ +++AC +  +LD GK V          SN  V +A +D+++KC  +E + 
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGAN 407

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            +F  +   D    N M+                      +++P   T++C+L +   + 
Sbjct: 408 SVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPACASLS 446

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G + H   +++G+ S+  VA++L+++Y K G +  +  +F  +  +DLVSW  ++ 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G   +G   E +  F E+ + G+ PD ++  ++L AC++ G +++G   F  MK ++ + 
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIE 566

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  EHYAC++DLL + G L KA     T+P  P  +IW ++L    IY D++L E VAER
Sbjct: 567 PKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAER 626

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           + +L+  +   Y LL   YA   + E + R+++ + K G+ K  GCSWI IK R+  F +
Sbjct: 627 VFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVS 686

Query: 601 GELQHH-GGQKIYLVLRLLTWEMEDEG 626
           G    H   +KI  +L+ +  +M++EG
Sbjct: 687 GNNSSHPHSKKIESLLKKMRRKMKEEG 713



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 51/213 (23%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + +  K IHG++ + G+++  ++ N  +DLY + G       LFD IP K+
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW +                               MI+GY   GY + A+  F++M+ 
Sbjct: 498 LVSWTV-------------------------------MIAGYGMHGYGNEAIATFNEMRD 526

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDM 189
            G+ P   +F  +L   S        H  ++  G     ++  +            ++D+
Sbjct: 527 AGIEPDEVSFISILYACS--------HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDL 578

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
             + G L  A+     +    D   W +L+ GC
Sbjct: 579 LSRTGNLSKAYKFIETLPIAPDATIWGALLCGC 611


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 161/535 (30%), Positives = 293/535 (54%), Gaps = 8/535 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFD++P P +  WN++I GY+   +   AL M+S MQL  V P  FTF  LL   S 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNMEELDIISW 214
             H   G+ +H  + R G   ++V + N LI +Y K   L  A  VF  L + E  I+SW
Sbjct: 132 LSHLQMGRFVHAQVFRLGFD-ADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            +++S    +G    AL+ F  MR     PD   +  V+NA T L++L +G+ + A  VK
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G      +L +   +++KC ++  +  LF+++   +  + N MIS Y + G+   A+++
Sbjct: 251 MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M+ +D+RP   +++  +S+   +  +E     +    +S +  +  ++S+L++M+AK
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            GS++ +  +F +   RD+V W+ +++G   +GRA E + ++  +   G+ P+ +T   +
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGL 430

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L+ACN+ G V +G   F+ M + + + P ++HYAC+IDLL +AG L +A ++   MP QP
Sbjct: 431 LMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
           G ++W ++L A   +  V+L E  A+++  +   +   Y  L+  YA    W+ +  V+ 
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            M++ G+NK  GCSW+ ++ R+  F  G+  H   ++I   +  +   +++ G V
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 171/328 (52%), Gaps = 5/328 (1%)

Query: 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           G+    F ++ L+ + +     KQIH  ++  GL  S  ++   LI      G + +A  
Sbjct: 17  GIHSDSF-YASLIDSATHKAQLKQIHARLLVLGLQFSGFLI-TKLIHASSSFGDITFARQ 74

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++    I  WN++I G   + + + AL  + +M+ +  SPD +T   ++ AC+ L +
Sbjct: 75  VFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH 134

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMI 319
           L  G+ V A   ++GF ++  V +  I L++KC RL  +  +FE L   +  +++   ++
Sbjct: 135 LQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIV 194

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           S Y + G    ALE+F  M + D++P    L  VL++   +  ++ G   H+  +K G +
Sbjct: 195 SAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE 254

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
               +  SL  MYAK G + ++  +F K+   +L+ WN ++ G  +NG A E +D+F E+
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + + + PD I++ + + AC   G +++ 
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQA 342



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 198/414 (47%), Gaps = 49/414 (11%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M S ++ A V+  S ++   L+  C         + +H  +F+LGF+A  ++ N  + LY
Sbjct: 106 MYSNMQLARVSPDSFTF-PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALY 164

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD--VVSWNSM 118
           ++                        C R       L +A  VF+ +P P+  +VSW ++
Sbjct: 165 AK------------------------CRR-------LGSARTVFEGLPLPERTIVSWTAI 193

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGL 175
           +S YA  G    ALE+FS M+   V+P       +L+    +     G+ IH S+++ GL
Sbjct: 194 VSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGL 253

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
            +   +L  SL  MY K G +  A  +F  M+  ++I WN++ISG   +GY   A+D F+
Sbjct: 254 EIEPDLL-ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M      PD  +I+  I+AC ++ +L++ + ++    +  +  +  + SA ID+F+KC 
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCG 372

Query: 296 RLEDSVRLFEQ-LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT----- 349
            +E +  +F++ LDR D  V + MI  YG +G    A+ L++ M R  + P + T     
Sbjct: 373 SVEGARLVFDRTLDR-DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           ++C  S +    V  G  F ++      +      + ++++  + G +D + E+
Sbjct: 432 MACNHSGM----VREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEV 481



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 4/216 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   + TA  +FD++  P+++ WN+MISGYA  GY+  A++MF +M  + VRP   + + 
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS 328

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +S    V S    + ++  + RS     +V + ++LIDM+ K G +  A  VF    + 
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ W+++I G    G    A+  + +M   G  P++ T   ++ AC     + +G   F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            L             +  IDL  +   L+ +  + +
Sbjct: 448 NLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIK 483


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 303/572 (52%), Gaps = 39/572 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+   EP+++ WN+M+ G AS       LEM+ +M   G  P+ +TF  LL
Sbjct: 31  DGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLL 90

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLS------------------------------NVV 181
            + + +     G+QIH  +++ G  L                               +VV
Sbjct: 91  KSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVV 150

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMRYS 240
              +LI  Y   G +  A  VF  + E D++SWN++I+G   N GY E AL+ F  M  +
Sbjct: 151 SCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEE-ALELFKEMMRT 209

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLED 299
              PDE T+  V++AC +  +++ G+++  L     GF S+  +++A I L+SKC  +E 
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
           +  LFE L   D    N +I  Y      + AL LFQ MLR    P + T+  VL +   
Sbjct: 270 ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 329

Query: 359 IPPVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
           +  ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  + L SWN
Sbjct: 330 LGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWN 389

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G   +GRA    D+F  + + G+ PD ITL  +L AC++ G +D G  +F ++ ++
Sbjct: 390 AMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQD 449

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y + P  EHY C+IDLL  AG   +A +I   MP +P   IW S+L+A  ++G+++L E+
Sbjct: 450 YNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAES 509

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            A+++M+++  +   Y LL+  YA  GRWE + R+++V+   G+ KV GCS I I + ++
Sbjct: 510 FAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVH 569

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            F  G+  H   ++IY +L  +   +E+ G V
Sbjct: 570 EFIIGDKLHPQSREIYRMLEEMDVLLEEAGFV 601



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 177/342 (51%), Gaps = 7/342 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F+  + IH  + KLG     Y     + +Y+R G  +D  ++FD   Q++
Sbjct: 89  LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA-SCGYSDYALEMFSKMQ 139
            +S    + G     ++ +A KVFD I E DVVSWN+MI+GY  +CGY + ALE+F +M 
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEE-ALELFKEMM 207

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              VRP   T   +LS  + +     G++IH  +       S++ + N+ I +Y K G +
Sbjct: 208 RTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDV 267

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A G+F  +   D++SWN+LI G  +    + AL  F  M  SG SP++ T+  V+ AC
Sbjct: 268 EIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327

Query: 257 TKLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
             L  +D G+   V+      G  + S + ++ ID+++KC  +E + ++F  +     + 
Sbjct: 328 AHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS 387

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            N MI  +  +G    A +LF  M +  I P + TL  +LS+
Sbjct: 388 WNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ +    + SWN+MI G+A  G ++ A ++FS+M+  G+ P   T   
Sbjct: 366 KCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVG 425

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  S+ +       +     +ID+ G  G+   A  +   M  E
Sbjct: 426 LLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPME 485

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  ELA
Sbjct: 486 PDGVIWCSLLKACKMHGNLELA 507


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/571 (31%), Positives = 302/571 (52%), Gaps = 40/571 (7%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR-PSGFTFSILL 154
           +LD A +VFD+IP P++ +WN++I  YAS      +L +F +M  Q    P  FTF  L+
Sbjct: 84  SLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLI 143

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S       GK  HG +I+  L  S+V + NSLI  Y K G L   + VF+N+   D+
Sbjct: 144 KAASELEELFTGKAFHGMVIKVLLG-SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWNS+I+     G  E AL+ F  M      P+  T+  V++AC K  + + G+ V + 
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSY 262

Query: 272 SVKVGFLSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDR-----W--------------- 310
            ++   +  S+ LS A +D+++KC  +ED+ RLF+++       W               
Sbjct: 263 -IERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDA 321

Query: 311 -----------DYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP 358
                      D A  N +IS Y + G  + ALELF +L L +  +P E TL   LS+  
Sbjct: 322 AQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACA 381

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +  ++ G   H    K G   N  + +SL++MY K G +  +  +F  ++++D+  W+ 
Sbjct: 382 QLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSA 441

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ GL  +G   + + +F ++ E+ + P+ +T   +L AC++ G V++G   F+ M+  Y
Sbjct: 442 MIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVY 501

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           GV+PG +HYAC++D+L +AG L +A+++   MP  P  S+W ++L A  I+ +V L E  
Sbjct: 502 GVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQA 561

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
             ++++L+  +   Y LL+  YA  G+W+ +  ++K+MR  G+ K  GCS I +   ++ 
Sbjct: 562 CSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHE 621

Query: 598 FNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           F  G+  H   +KIY  L  +   +E  G V
Sbjct: 622 FLVGDNSHPSAKKIYAKLDEIVARLETIGYV 652


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 169/539 (31%), Positives = 298/539 (55%), Gaps = 6/539 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K    D A K+F  +   D V+WN MISGY   G  + +L  F +M   GV P   TFS 
Sbjct: 286 KCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSS 345

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LL +VS   +  + KQIH  ++R  +SL ++ L ++LID Y K   +  A  +F     +
Sbjct: 346 LLPSVSKFENLEYCKQIHCYIMRHSISL-DIFLTSALIDAYFKCRGVSMAQNIFSQCNSV 404

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ + ++ISG  ++G    +L+ F  +     SP+E T+  ++     L  L  G+++ 
Sbjct: 405 DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH 464

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K GF +   +  A ID+++KC R+  +  +FE+L + D    N MI+   +     
Sbjct: 465 GFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPS 524

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+++F+ M    I     ++S  LS+   +P    G   H   IK    S+    S+L+
Sbjct: 525 AAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLI 584

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDR 447
           +MYAK G++ ++  +F  + ++++VSWN+I+     +G+  ++L +F E++E+ G+ PD+
Sbjct: 585 DMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQ 644

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           IT   ++ +C + G VD+G+  F +M E+YG+ P +EHYAC++DL  +AG+L +A +   
Sbjct: 645 ITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVK 704

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           +MPF P   +W ++L A  ++ +V+L E  + ++MDL   +   Y L++ A+A    WE+
Sbjct: 705 SMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWES 764

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + +V+ +M++  + K+ G SWI I  R + F +G++ H     IY +L  L  E+  EG
Sbjct: 765 VTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEG 823



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 235/455 (51%), Gaps = 19/455 (4%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           ++  L+   +D   K+FD + + D V WN M++GYA CG  D  ++ FS M++  + P+ 
Sbjct: 180 IKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNA 239

Query: 148 FTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            TF  +LS  +S      G Q+HG ++ SG+     +  NSL+ MY K G    A  +F 
Sbjct: 240 VTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSI-KNSLLSMYSKCGRFDDASKLFR 298

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M   D ++WN +ISG   SG  E +L  FY M  SG  PD  T S ++ + +K  NL+ 
Sbjct: 299 MMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEY 358

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            KQ+    ++     +  + SA ID + KC  +  +  +F Q +  D  V   MIS Y  
Sbjct: 359 CKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLH 418

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVV 383
            G    +LE+F+ +++  I P E TL  +L  I I   ++ G + H   IK GFD+   +
Sbjct: 419 NGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNI 478

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
             ++++MYAK G ++ + EIF +L KRD+VSWN+++    Q+   +  +D+F ++   G+
Sbjct: 479 GCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGI 538

Query: 444 PPDRITLAAVLLAC------NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
             D ++++A L AC      ++G  +   M+  S   + Y         + +ID+  + G
Sbjct: 539 CYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYS-------ESTLIDMYAKCG 591

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
            L  A+++  TM  +   S W SI+ A   +G +K
Sbjct: 592 NLKAAMNVFKTMKEKNIVS-WNSIIAACGNHGKLK 625



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 189/439 (43%), Gaps = 32/439 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C +       K +H  L     +  +Y   R L +Y+  G+  D  ++F  +  
Sbjct: 39  SLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRL-- 96

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                      ++    +  WNS+IS +   G  + AL  + KM
Sbjct: 97  ---------------------------DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKM 129

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHG-SMIRSGLSLS-NVVLGNSLIDMYGKLGVL 196
              GV P   TF  L+    +  + K I   S   S L +  N  + +SLI  Y + G +
Sbjct: 130 LCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKI 189

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
                +F  + + D + WN +++G    G  +  +  F  MR    SP+  T   V++ C
Sbjct: 190 DVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVC 249

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                +D G Q+  L V  G      + ++ + ++SKC R +D+ +LF  + R D    N
Sbjct: 250 ASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWN 309

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKS 375
            MIS Y + G  E +L  F  M+   + P   T S +L S+     +E+  Q H   ++ 
Sbjct: 310 CMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRH 369

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
               +  + S+L++ Y K   +  +  IF + +  D+V +  ++ G   NG   ++L++F
Sbjct: 370 SISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMF 429

Query: 436 EELLEEGLPPDRITLAAVL 454
             L++  + P+ ITL ++L
Sbjct: 430 RWLVKVKISPNEITLVSIL 448



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 134/276 (48%), Gaps = 37/276 (13%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +    + +HG + K GF+    +G   +D+Y++ G  +   ++F+ + +++ +SWN    
Sbjct: 456 ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWN---- 511

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                      SMI+  A       A+++F +M + G+     +
Sbjct: 512 ---------------------------SMITRCAQSDNPSAAIDIFRQMGVSGICYDCVS 544

Query: 150 FSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S  LS  +   S   GK IHG MI+  L+ S+V   ++LIDMY K G L  A  VF  M
Sbjct: 545 ISAALSACANLPSESFGKAIHGFMIKHSLA-SDVYSESTLIDMYAKCGNLKAAMNVFKTM 603

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKG 265
           +E +I+SWNS+I+ C N G  + +L  F+ M   SG  PD+ T   +I++C  + ++D+G
Sbjct: 604 KEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEG 663

Query: 266 KQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
            + F +++   G        +  +DLF +  RL ++
Sbjct: 664 VRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 699



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 3/222 (1%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           +S+++ AC+    L +GKQV A  +      +S      + +++ C    D  ++F +LD
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 309 --RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGS 366
             R      N +IS++ R G    AL  +  ML   + P   T  C++ +        G 
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157

Query: 367 QFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            F S  + S G D N  VASSL++ Y + G ID  +++F ++ ++D V WN ++ G  + 
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
           G     +  F  +  + + P+ +T   VL  C     +D G+
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV 259



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 52/267 (19%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C +  S  F K IHG + K    +  Y  +  +D+Y++ G     + +F  + +
Sbjct: 546 SAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE-----PDVVSWNSMISGYASCGYSDYALE 133
           KN +SWN  +        L  +L +F E+ E     PD +++  +IS     G  D  + 
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665

Query: 134 MFSKM-QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            F  M +  G++P                  +Q H + +               +D++G+
Sbjct: 666 FFRSMTEDYGIQP------------------QQEHYACV---------------VDLFGR 692

Query: 193 LGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
            G L  A+    +M    D   W +L+  C      ELA  +  S +     P      +
Sbjct: 693 AGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELA--EVASSKLMDLDPSNSGYYV 750

Query: 252 VIN----------ACTKLRNLDKGKQV 268
           +I+          + TK+R+L K ++V
Sbjct: 751 LISNAHANAREWESVTKVRSLMKEREV 777


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 178/612 (29%), Positives = 299/612 (48%), Gaps = 60/612 (9%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C    S    K IH    K  F    Y+ N  L++YS  G+                
Sbjct: 269 VQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGS---------------- 312

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                          L+++ ++F+ +P  D   WNSMIS YA+ G  + A+++F +MQ +
Sbjct: 313 ---------------LESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSE 357

Query: 142 GVRPSGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           GV+    T  I+LS      S    GK +H  +I+SG+ + +  LGN+L+ MY +L  + 
Sbjct: 358 GVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRI-DASLGNALLSMYTELNCVE 416

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               +F  M+ +DIISWN++I     +     A + F  MR S   P+ YTI  ++ AC 
Sbjct: 417 SVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACE 476

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  LD G+ +    +K     N  + +A  D++  C     +  LFE     D    N 
Sbjct: 477 DVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNA 536

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MI                         P   T+  VLSS   +  +  G   H+   + G
Sbjct: 537 MIXK---------------------AEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRG 575

Query: 377 FDS--NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           F    +  +A++ + MYA+ GS+ S+  IF  L KR+++SWN ++ G   NGR ++ +  
Sbjct: 576 FSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLA 635

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F ++LE+G  P+ +T  +VL AC++ GF++ G+ +F +M +++ V P   HY+CI+DLL 
Sbjct: 636 FSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLA 695

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G + +A +   +MP +P  S+W ++L +   Y D K  + + E++  L+  +   Y L
Sbjct: 696 RGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVL 755

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA  G W  + R++  +++ G+ K  G SWI +KN+++ F+AG+  H    KIY  
Sbjct: 756 LSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAK 815

Query: 615 LRLLTWEMEDEG 626
           L +L   M + G
Sbjct: 816 LSILLSSMRETG 827



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 196/366 (53%), Gaps = 6/366 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           ++ A  VFD + + DVV WN+M+ GY   G  + A+ +  +M  + +RP+  T   LL  
Sbjct: 111 VEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLA 170

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              A     G+ +HG  +R+G+  SN  +  +LI  Y +  +      +F  M   +I+S
Sbjct: 171 CEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVS 229

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN++ISG ++ G    AL+ F  M       D  T+ + + AC +L +L  GKQ+  L++
Sbjct: 230 WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAI 289

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F+ +  +L+A ++++S    LE S +LFE +   D  + N MIS Y  +G  E A++
Sbjct: 290 KFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMD 349

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP--IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           LF  M  E ++  E T+  +LS        +  G   H+  IKSG   +A + ++L+ MY
Sbjct: 350 LFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMY 409

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            +   ++S  +IF ++   D++SWNT+++ L +N   A+  ++FE + E  + P+  T+ 
Sbjct: 410 TELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTII 469

Query: 452 AVLLAC 457
           ++L AC
Sbjct: 470 SILAAC 475



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---H 162
           +I +P    WNS+I   A+       L  +++M+  GV P+  T  ++L   ++      
Sbjct: 21  QIKDPK--HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK IH S+  + L + +V +G +++D Y K G +  A  VF  M + D++ WN+++ G  
Sbjct: 79  GKSIHRSIQGTDL-MDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYV 137

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNS 281
             G  E A+     M      P+  T+  ++ AC     L  G+ V    ++ G F SN 
Sbjct: 138 GWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP 197

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A I  + + + +     LF+ +   +    N MIS Y   G    ALELF  ML +
Sbjct: 198 HVATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVD 256

Query: 342 DIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           +++    T L  V +   +  ++ G Q H +AIK  F  +  + ++L+ MY+  GS++SS
Sbjct: 257 EVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESS 316

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            ++F  +  RD   WN+++      G   E +D+F  +  EG+  D  T+  +L  C
Sbjct: 317 HQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 373



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 180/432 (41%), Gaps = 67/432 (15%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C +L    L        K++H H+ K G      LGN  L +Y+     + V ++FD
Sbjct: 370 LSMCEELASGLLK------GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFD 423

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +   + ISW                               N+MI   A       A E+
Sbjct: 424 RMKGVDIISW-------------------------------NTMILALARNTLRAQACEL 452

Query: 135 FSKMQLQGVRPSGFT-FSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M+   ++P+ +T  SIL +     C   G+ IHG +++  + + N  L  +L DMY 
Sbjct: 453 FERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEI-NQPLRTALADMYM 511

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
             G    A  +F    + D+ISWN++I                         P+  TI  
Sbjct: 512 NCGDEATARDLFEGCPDRDLISWNAMIXKA---------------------EPNSVTIIN 550

Query: 252 VINACTKLRNLDKGKQVFALSVKVGF-LSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDR 309
           V+++ T L  L +G+ + A   + GF L   + L+ A I ++++C  L+ +  +F+ L +
Sbjct: 551 VLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPK 610

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ- 367
            +    N MI+ YG  G G  A+  F  ML +  RP   T   VLS+      +E G Q 
Sbjct: 611 RNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQL 670

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNG 426
           FHSM          V  S ++++ A+ G ID + E    +  + D   W  ++       
Sbjct: 671 FHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYS 730

Query: 427 RAAETLDVFEEL 438
            A +   +FE+L
Sbjct: 731 DAKQAKTIFEKL 742



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 155/325 (47%), Gaps = 11/325 (3%)

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D   WNS+I    N    +  L  +  M   G  P+  T+ +V+ AC     +++GK + 
Sbjct: 24  DPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIH 83

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
                   + +  V +A +D + KC  +ED+  +F+ +   D  + N M+  Y  +G  E
Sbjct: 84  RSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYE 143

Query: 330 VALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSG-FDSNAVVASSL 387
            A+ L + M RE++RP   T+ + +L+      +  G   H   +++G FDSN  VA++L
Sbjct: 144 EAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATAL 203

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +  Y +   +     +F  +  R++VSWN ++ G    G   + L++F ++L + +  D 
Sbjct: 204 IGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDC 262

Query: 448 ITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYA--CIIDLLCQAGQLGKAID 504
           +T+   + AC   G +  G  +   A+K E+     E+ Y    ++++    G L  +  
Sbjct: 263 VTMLVAVQACAELGSLKLGKQIHQLAIKFEF----VEDLYILNALLNMYSNNGSLESSHQ 318

Query: 505 ITSTMPFQPGCSIWESILRASAIYG 529
           +  ++P +    +W S++ A A +G
Sbjct: 319 LFESVPNRDA-PLWNSMISAYAAFG 342


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 187/602 (31%), Positives = 305/602 (50%), Gaps = 51/602 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C    +    + +HG L K+GF+   Y+ N  +D+Y + G                
Sbjct: 130 VIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF--------------- 174

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           ++ A KVFDE+P  D+VSWNSM+SGY   G    +L  F +M  
Sbjct: 175 ----------------IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLR 218

Query: 141 QGVRPSGFTFSILLSTVS-SAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G +   F     L   S   C   G +IH  +IRS L L ++++  SLIDMYGK G + 
Sbjct: 219 LGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELEL-DIMVQTSLIDMYGKCGKVD 277

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  VF  +   +I++WN++I G                       PD  T+  ++ +C+
Sbjct: 278 YAERVFNRIYSKNIVAWNAMIGG---------------MQEDDKVIPDVITMINLLPSCS 322

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +   L +GK +   +++  FL   ++ +A +D++ KC  L+ +  +F Q++  +    N 
Sbjct: 323 QSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNT 382

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           M++ Y +    + AL++FQ +L E ++P   T++ VL ++  +     G Q HS  +K G
Sbjct: 383 MVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLG 442

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             SN  ++++++ MYAK G + ++ E F  +  +D+VSWNT++M    +G    ++  F 
Sbjct: 443 LGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFS 502

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+  +G  P+  T  ++L AC+  G +D+G   F++MK EYG+ PG EHY C++DLL + 
Sbjct: 503 EMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRN 562

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L +A      MP  P   IW S+L AS  + DV L E  A  ++ L+  +   Y LL+
Sbjct: 563 GNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLS 622

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  GRWE + R+K +M++ G+ K  GCS + I  R  +F   +  H     IY VL 
Sbjct: 623 NMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLD 682

Query: 617 LL 618
           +L
Sbjct: 683 IL 684



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 223/459 (48%), Gaps = 28/459 (6%)

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P    I+ ++C  G ++S  +  AL +F+++   D   WN +I GY + G    A++ + 
Sbjct: 56  PNDLNITRDLC--GFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYY 113

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M+ +G+R   FTF  ++           G+++HG +I+ G  L +V + N LIDMY K+
Sbjct: 114 RMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDL-DVYVCNFLIDMYLKI 172

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  VF  M   D++SWNS++SG    G G  +L  F  M   G   D + +   +
Sbjct: 173 GFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISAL 232

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC+    L  G ++    ++     + +V ++ ID++ KC +++ + R+F ++   +  
Sbjct: 233 GACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIV 292

Query: 314 VINVMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIPIP-PVEHGSQFHS 370
             N MI                   ++ED  + P   T+  +L S      +  G   H 
Sbjct: 293 AWNAMIGG-----------------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHG 335

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            AI+  F    V+ ++L++MY K G +  +  +F +++++++VSWNT++    QN +  E
Sbjct: 336 FAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKE 395

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +F+ +L E L PD IT+A+VL A        +G  + S +  + G+         I+
Sbjct: 396 ALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIM-KLGLGSNTFISNAIV 454

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            +  + G L  A +    M  +   S W +++ A AI+G
Sbjct: 455 YMYAKCGDLQTAREFFDGMVCKDVVS-WNTMIMAYAIHG 492


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/594 (28%), Positives = 309/594 (52%), Gaps = 37/594 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH  + K  +  + ++ N  + +Y+RFG                                
Sbjct: 304 IHATVLKSSYYINVFVANALIAMYARFG-------------------------------K 332

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSILLS 155
           +  A  +F  + + D +SWNSM+SG+   G    AL+ + +M+  G +P      SI+ +
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 392

Query: 156 TVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +  S    HG QIH   +++GL  S++ +GNSL+DMY K   + Y   +F  M + D++S
Sbjct: 393 SARSGNTLHGMQIHAYAMKNGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 451

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W ++I+G   +G    AL+ F  ++  G   D   IS ++ AC+ L+ +   K++ +  +
Sbjct: 452 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYII 511

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + G LS+ ++ +  +D++ +C  ++ + R+FE ++  D      MIS Y   G    ALE
Sbjct: 512 RKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALE 570

Query: 334 LFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF LM    + P   +L S + ++  +  ++ G + H   I+ GF     +AS+L++MYA
Sbjct: 571 LFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYA 630

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           + G+++ S  +F  +  +DLV W +++     +G     +D+F  + +E + PD I   A
Sbjct: 631 RCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVA 690

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G +++G     +MK EY + P  EHYAC++DLL +A  L +A      M  +
Sbjct: 691 VLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVE 750

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P   +W ++L A  I+ + +L E  A++++++   +P  Y L++  Y+   RW+ +  V+
Sbjct: 751 PTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVR 810

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             M+ +G+ K  GCSWI + N+++TF A +  H    +IY  L  +T ++  EG
Sbjct: 811 MRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEG 864



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 243/456 (53%), Gaps = 9/456 (1%)

Query: 93  KSDNLDTALKVFDEIPEP-DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K ++L+ A ++FD +PE  DVVSWNSMIS Y+S G S  AL +F +MQ   + P+ +TF 
Sbjct: 227 KCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFV 286

Query: 152 ILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L     +   KQ   IH ++++S   + NV + N+LI MY + G +  A  +F NM++
Sbjct: 287 AALQACEDSSFIKQGMFIHATVLKSSYYI-NVFVANALIAMYARFGKMGEAANIFYNMDD 345

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D ISWNS++SG   +G    AL  ++ MR +G  PD   +  +I A  +  N   G Q+
Sbjct: 346 WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI 405

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A ++K G  S+  V ++ +D+++K   ++    +F+++   D      +I+ + + G  
Sbjct: 406 HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 465

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             ALELF+ +  E I      +S +L +   +  +    + HS  I+ G  S+ V+ + +
Sbjct: 466 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGI 524

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y + G++D +  +F  ++ +D+VSW +++     NG A E L++F  + E G+ PD 
Sbjct: 525 VDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDS 584

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           I+L ++L A      + KG  +   +  +  V+ G    + ++D+  + G L K+ ++ +
Sbjct: 585 ISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSL-ASTLVDMYARCGTLEKSRNVFN 643

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            +       +W S++ A  ++G  +   ++  RM D
Sbjct: 644 FIR-NKDLVLWTSMINAYGMHGCGRAAIDLFRRMED 678



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 229/464 (49%), Gaps = 47/464 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLG--FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           S +++ C S K+    + +H H+      FN+  +L  R + +Y + G   D        
Sbjct: 82  SSVLELCGSKKALSEGQQVHAHMITSNALFNS-VFLSTRLVFMYGKCGCLVD-------- 132

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                                  A K+FD +P   + +WN+MI  Y + G    +LE++ 
Sbjct: 133 -----------------------AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYR 169

Query: 137 KMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M++ G+     TF  +L     +    +G ++HG  I+ G  +S V + NS++ MY K 
Sbjct: 170 EMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGY-VSIVFVANSIVGMYTKC 228

Query: 194 GVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
             L  A  +F  M E+ D++SWNS+IS   ++G    AL  F  M+ +  +P+ YT    
Sbjct: 229 NDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAA 288

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC     + +G  + A  +K  +  N  V +A I ++++  ++ ++  +F  +D WD 
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSM 371
              N M+S + + G    AL+ +  M     +P     +S + +S       HG Q H+ 
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+K+G DS+  V +SL++MYAK  S+     IF K+  +D+VSW TI+ G  QNG  +  
Sbjct: 409 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 468

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
           L++F E+  EG+  D + ++++LLAC+       G+ + S++KE
Sbjct: 469 LELFREVQLEGIDLDVMMISSILLACS-------GLKLISSVKE 505



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 10/340 (2%)

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           PS F+     S+V   C        G+Q+H  MI S    ++V L   L+ MYGK G L 
Sbjct: 72  PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M    I +WN++I     +G    +L+ +  MR SG   D  T   ++ AC 
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVIN 316
            L++   G +V  L++K G++S   V ++ + +++KCN L  + +LF+++ ++ D    N
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
            MIS Y   G    AL LF  M +  + P  +T    L +      ++ G   H+  +KS
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
            +  N  VA++L+ MYA+ G +  +  IF  +D  D +SWN+++ G  QNG   E L  +
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMK 474
            E+ + G  PD + + +++ A    G    GM + + AMK
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMK 411



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 38/211 (18%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHG L + GF     L +  +D+Y+R GT                            
Sbjct: 603 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGT---------------------------- 634

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              L+ +  VF+ I   D+V W SMI+ Y   G    A+++F +M+ + + P    F  +
Sbjct: 635 ---LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 691

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-EL 209
           L   S +     G++   SM               L+D+ G+   L  A+     ME E 
Sbjct: 692 LYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEP 751

Query: 210 DIISWNSLISGC---FNSGYGELALDQFYSM 237
               W +L+  C    N   GE+A  +   M
Sbjct: 752 TAEVWCALLGACQIHSNKELGEIAAQKLLEM 782


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 183/655 (27%), Positives = 325/655 (49%), Gaps = 77/655 (11%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP- 108
           T+L N  + +Y +  + +D  Q+FD I Q+N  SW+I +   +++     AL+V+ E+  
Sbjct: 2   TFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVR 61

Query: 109 --------------------------------------EPDVVSWNSMISGYASC----- 125
                                                 E DVV   S+I  +A C     
Sbjct: 62  KEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEE 121

Query: 126 ---------------------------GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
                                      G +D AL+ + KM+ QG+ P  FT++ +L   S
Sbjct: 122 AESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACS 181

Query: 159 SA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           S      GK IH  ++ S     N+ + N+LI MY K G L  +  +FL M+  D++SWN
Sbjct: 182 SPDFLLDGKHIHKHILESK-HFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++I+     G+ + A   F+ M   G++PD YT S ++ AC   + L+ G+ +       
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           GF  +  + +  I +F++C  LE + R F  +++ +    N M++ Y ++  G+ AL L+
Sbjct: 301 GFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLY 360

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           + ML E   P  FT S V+ S   +  +  G   H  +   GF+ + ++ ++L+ MYAK 
Sbjct: 361 KNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKC 420

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           GS+  + + F  +  +D+VSW+ ++    Q+G A E L++   +  +G+  + +T ++VL
Sbjct: 421 GSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVL 480

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++GG + +G+  F  + +++G+   EE+    IDLL +AG L +A  +  TMPF+  
Sbjct: 481 HACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVS 540

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
                ++L    ++GDV+  + + +R++ L+  +P  Y LL   YA  GRW+ + ++++ 
Sbjct: 541 FVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRY 600

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL-RLLTWEMEDEGCV 628
           MRK G+ + TGCS I  +++IY F+ G+  +    +I   L RL +   E+EG V
Sbjct: 601 MRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYV 655



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 150/283 (53%), Gaps = 6/283 (2%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGELALDQFYS 236
           +  L N +I MYGK      A  VF  +++ +  SW+ L+  C+  N+ Y E AL+ +  
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVE-CYVQNAMYQE-ALEVYKE 58

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M     S D YT+S V+ ACTKL ++++G+ V   + ++GF  + +V ++ I LF+KC  
Sbjct: 59  MVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGC 118

Query: 297 LEDSVRLFEQLDRW-DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           LE++  +F  +    D   +  MI  Y R+G  ++AL+ +  M  + + P  FT + +L 
Sbjct: 119 LEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILG 178

Query: 356 SIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +   P  +  G   H   ++S    N  V ++L+ MYAK GS+  S  +F+ +D +D+VS
Sbjct: 179 ACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS 238

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           WN ++   T  G   +   +F  +   G  PD  T +++L AC
Sbjct: 239 WNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGAC 281



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S K  +  + +H  +   GF+    + N  + +++R G+ +   + F  I +
Sbjct: 275 SSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEK 334

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K                               ++ +WN+M++ YA       AL ++  M
Sbjct: 335 K-------------------------------ELGAWNTMLAAYAQFDKGKDALFLYKNM 363

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L+G  P  FTFS ++ + +S      GK IH      G    +V+LG +L++MY K G 
Sbjct: 364 LLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFE-KDVILGTALVNMYAKCGS 422

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  +   D++SW+++I+     G+ E AL+  + M   G + +E T S V++A
Sbjct: 423 LADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHA 482

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    L +G   F  LS   G   +       IDL  +   L+++  +   +
Sbjct: 483 CSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTM 535



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 49/246 (19%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++D C S  +    K IH      GF     LG   +++Y++ G+             
Sbjct: 376 SSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGS------------- 422

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             L  A K FD I   DVVSW++MI+  A  G+++ ALE+   M
Sbjct: 423 ------------------LADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLM 464

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIH-GSMIRSGLSL--------SNVVLGNSLIDM 189
            LQG+  +  T S +L   S   HG +++ G     GLS          N V     ID+
Sbjct: 465 NLQGIAQNEVTASSVLHACS---HGGRLYEGIDYFMGLSQDFGIERDEENTV---GFIDL 518

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
            G+ G L  A  V   M  ++  ++  +L+ GC    +G++   +  + R     P+   
Sbjct: 519 LGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGC--KVHGDVRRGKALTKRIVALEPENPG 576

Query: 249 ISIVIN 254
             +++N
Sbjct: 577 SYVLLN 582


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 189/632 (29%), Positives = 320/632 (50%), Gaps = 68/632 (10%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L+ +C S ++F   K IH H+ K G +   +  ++ ++                     
Sbjct: 34  KLLSKCQSIRTF---KQIHAHIIKTGLHNTLFALSKLIEF-------------------- 70

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                      + +S ++  A+ +F+ I EP++  WNSMI G +       AL  F +M 
Sbjct: 71  ---------SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMI 121

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             GV P+ +TF  LL +   ++SA  GKQIH  +++ G  +S+V +  SLI+MY + G +
Sbjct: 122 YSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGF-VSDVFIHTSLINMYAQSGEM 180

Query: 197 ------------------------YYAFG-------VFLNMEELDIISWNSLISGCFNSG 225
                                   Y  +G       +F  M   D++SWN++I+G    G
Sbjct: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
             + AL  F  MR +   P+E TI  V++AC +   LD G  + +     G  SN  +++
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A ID++SKC  L+ +  LF+ +   D    NVMI  Y      + AL LF+ ML   + P
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
           TE T   +L S   +  ++ G   H+   K+    +  +++SL+++YAK G+I ++ ++F
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             +  + L SWN ++ GL  +G+A +  ++F ++  +G+ P+ IT   +L AC + G VD
Sbjct: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
            G   FS+M ++Y + P  +HY C+IDLL +AG   +A  +   M  +P  +IW S+L A
Sbjct: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
              +G V+L E VAER+ +L+  +P  Y LL+  YA  G+W+ + R++  +   G+ KV 
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
           GC+ I + N ++ F  G+  H   + IY +L 
Sbjct: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLE 632


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/597 (28%), Positives = 319/597 (53%), Gaps = 41/597 (6%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN ASL     ++  C + +   F  ++HG + K G ++   LGN  +D+Y +FG     
Sbjct: 211 VNVASLV---SVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFG----- 262

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     +L+++++VF+ + E + VSWNS +  +A  G+ +
Sbjct: 263 --------------------------DLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHE 296

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
             LEMF  M    V P   T S LL  +    +   GK++HG  IR  +  S++ + NSL
Sbjct: 297 DVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAME-SDIFIANSL 355

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMY K G L  A  +F N+E  +++SWN++I+    +G    A      M+ +G  P+ 
Sbjct: 356 MDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNS 415

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           +T+  ++ AC+++ ++  GKQ+ A S+    +S+  V +A ID+++KC +L  +  +F++
Sbjct: 416 FTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR 475

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHG 365
            ++ D +  N +I  Y +      +L LFQ M    I     + + C+ +   +   + G
Sbjct: 476 SEKDDVSY-NTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQG 534

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H + ++   +++  +A+SL+++Y K G + ++++IF ++ ++D+ SWNT+++G   +
Sbjct: 535 KEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMH 594

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G+     ++F+ + ++G+  D ++  AVL AC++GG VD+G   FS M  +  + P + H
Sbjct: 595 GQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQ-NIKPQQMH 653

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YAC++DLL +AGQL ++++I + MPF     +W ++L +  I+GD++L    AE + +L+
Sbjct: 654 YACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELK 713

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
                 Y+LL   Y+  G W     +K +M+   + K    SW+   N++  F  G+
Sbjct: 714 PEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 770



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 195/400 (48%), Gaps = 10/400 (2%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA--------CHGKQI 166
           WNS+    AS G    AL +++ M   GVRP   TF   L   ++A          G ++
Sbjct: 74  WNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAEL 133

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H + +R GL L++V  GN+L+  Y   G    A  VF  M   DI+SWNSL+S    +G 
Sbjct: 134 HAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGM 193

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E A      M  SG   +  ++  V+ AC   R+   G  V  L +K G  S   + +A
Sbjct: 194 LEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNA 253

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D++ K   LE S+R+F  +   +    N  +  +   GF E  LE+F++M   ++ P 
Sbjct: 254 LVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPG 313

Query: 347 EFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
             TLS +L ++      H G + H  +I+   +S+  +A+SLM+MYAK G ++ ++ IF 
Sbjct: 314 SVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFE 373

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
            ++ R++VSWN ++  L QNG   E   +  E+ + G  P+  TL  +L AC+    V  
Sbjct: 374 NIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKM 433

Query: 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           G  +  A      +M        +ID+  + GQL  A DI
Sbjct: 434 GKQIH-AWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDI 472



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 243/505 (48%), Gaps = 49/505 (9%)

Query: 48  AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI 107
           A  + GN  +  Y+  G + D  ++FDE+P ++ +SWN  +  LL +  L+ A +    +
Sbjct: 145 ADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGM 204

Query: 108 PEPDV-VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
               + V+  S++S   +CG                 R  GF              G  +
Sbjct: 205 MRSGIPVNVASLVSVVPACGTE---------------RDEGF--------------GLSV 235

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF-NSG 225
           HG +++SGL  S V LGN+L+DMYGK G L  +  VF  M+E + +SWNS + GCF ++G
Sbjct: 236 HGLVLKSGLD-SVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSAL-GCFAHAG 293

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
           + E  L+ F  M     +P   T+S ++ A   L     GK+V   S++    S+  + +
Sbjct: 294 FHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIAN 353

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           + +D+++K   LE +  +FE ++  +    N MI+   + G    A  L   M +    P
Sbjct: 354 SLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECP 413

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             FTL  +L +   +  V+ G Q H+ +I     S+  V+++L+++YAK G +  + +IF
Sbjct: 414 NSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIF 473

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            + +K D VS+NT+++G +Q+    E+L +F+++   G+  D ++    L AC       
Sbjct: 474 DRSEKDD-VSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSAC------- 525

Query: 465 KGMLVFSAMKEEYGVMPGE---EH---YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
             +  F   KE +GV+       H      ++DL  + G L  A  I + +  +   S W
Sbjct: 526 ANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVAS-W 584

Query: 519 ESILRASAIYGDVKLTENVAERMMD 543
            +++    ++G + +   + + M D
Sbjct: 585 NTMILGYGMHGQIDVAFELFDLMKD 609


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 298/595 (50%), Gaps = 36/595 (6%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           ++H    K G + H ++ N  LD Y                          C  GLL + 
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAY--------------------------CKHGLLAA- 188

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
               A +VF E+ + D V++N+M+ G +  G    AL++F+ M+  G+  + FTFS +L+
Sbjct: 189 ----ARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +   H   G Q+H  ++RS  S+ NV + NSL+D Y K   L     +F  M E D +
Sbjct: 245 VAAGMAHLLLGHQVHALVLRST-SVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNV 303

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           S+N +I+    +      L  F  M+  G+       + +++    L ++  GKQ+ A  
Sbjct: 304 SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQL 363

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V +G  S  ++ +A ID++SKC  L+ +   F             +I+ Y + G  E AL
Sbjct: 364 VLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEAL 423

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF  M R  +RP   T S ++ +S  +  +  G Q HS  I+SG+ S+    S L++MY
Sbjct: 424 QLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMY 483

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +D +   F ++ +R+ +SWN ++      G A   + +FE +L  G  PD +T  
Sbjct: 484 AKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFL 543

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +VL AC++ G  D+ M  F  MK +Y + P +EHYAC+ID L + G   +   +   MPF
Sbjct: 544 SVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPF 603

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +    IW SIL +  I+G+ +L    A+++  ++     PY +L+  YA  G+WE    V
Sbjct: 604 KADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACV 663

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           KK+MR  G+ K +G SW+ IK +IY+F + +L      +I   L  L  EM+ +G
Sbjct: 664 KKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQG 718



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 247/509 (48%), Gaps = 18/509 (3%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           + K GF+  TY  N  L      G       +FD++P KN  S N+ L     S +L  A
Sbjct: 34  MVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
             +F   P  +  +W  M+  +A+ G +  AL +F  M  +GV P   T + +L+     
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL--PG 151

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
           C    +H   I+ GL  ++V + N+L+D Y K G+L  A  VFL M + D +++N+++ G
Sbjct: 152 CTVPSLHPFAIKFGLD-THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
           C   G    AL  F +MR +G     +T S ++     + +L  G QV AL ++   + N
Sbjct: 211 CSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLN 270

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V ++ +D +SKC+ L+D  RLF+++   D    NV+I+ Y         L LF+ M +
Sbjct: 271 VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQK 330

Query: 341 ----EDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
                 + P    LS   S   +P V  G Q H+  +  G  S  ++ ++L++MY+K G 
Sbjct: 331 LGFDRQVLPYATMLSVAGS---LPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 387

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +D++   F    ++  +SW  ++ G  QNG+  E L +F ++   GL PDR T ++++ A
Sbjct: 388 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 457 CNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
            +    +  G  + S +     +  V  G    + ++D+  + G L +A+     MP + 
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSG----SVLVDMYAKCGCLDEALRTFDEMPERN 503

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMM 542
             S W +++ A A YG+ K    + E M+
Sbjct: 504 SIS-WNAVISAYAHYGEAKNAIKMFEGML 531



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 100/234 (42%), Gaps = 40/234 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I    S       + +H +L + G+ +  + G+  +D+Y++ G  D+ L+ FDE+P+
Sbjct: 442 SSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +N ISWN  +           A+K+F+ +      PD V++ S+++  +  G +D  ++ 
Sbjct: 502 RNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 561

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F  M+ Q        +SI       AC                        +ID  G++G
Sbjct: 562 FHLMKHQ--------YSISPWKEHYAC------------------------VIDTLGRVG 589

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGEL---ALDQFYSMRYSGYSP 244
                  + + M  + D I W S++  C   G  EL   A D+ + M  +  +P
Sbjct: 590 CFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATP 643


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 191/614 (31%), Positives = 312/614 (50%), Gaps = 42/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S ++  + + +HG + K G  ++  + N  L +YS+ G S+D          
Sbjct: 265 SALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSED---------- 314

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A  VF ++ E D++SWNSM++ +   G    ALE+  +M
Sbjct: 315 ---------------------AEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEM 353

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            LQ  + + +   +  +T  SAC+     K +H  +I  GL   N+++GN+L+ MYGK G
Sbjct: 354 -LQTRKATNY---VTFTTALSACYNLETLKIVHAFVILLGLH-HNLIIGNALVTMYGKFG 408

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  V   M + D ++WN+LI G  ++     A++ F  +R  G   +  TI  +++
Sbjct: 409 SMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLS 468

Query: 255 ACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           A     +L D G  + A  V  GF   + V S+ I ++++C  L  S  +F+ L   + +
Sbjct: 469 AFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSS 528

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMA 372
             N ++S    YG GE AL+L   M  + I   +F+ S   + I  +  ++ G Q HS+ 
Sbjct: 529 TWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLI 588

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK GF+SN  V ++ M+MY K G ID    I  +   R   SWN ++  L ++G   +  
Sbjct: 589 IKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAR 648

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           + F E+L+ GL PD +T  ++L AC++GG VD+G+  FS+M  ++GV  G EH  CIIDL
Sbjct: 649 EAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDL 708

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG+L +A +  + MP  P   +W S+L A  I+G+++L    A+R+ +L       Y
Sbjct: 709 LGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAY 768

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            L +   A   RW  +  V+K M  + I K   CSW+ +KN++ TF  G+  H    +IY
Sbjct: 769 VLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIY 828

Query: 613 LVLRLLTWEMEDEG 626
             L  L   + + G
Sbjct: 829 AKLEELKKIIREAG 842



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 236/508 (46%), Gaps = 56/508 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A  +H H+ K G     ++G   L  Y  FG   +V                        
Sbjct: 78  AFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDM---------------------- 115

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                    VF EI EP++VSW S++ GYA  G     + ++ +++  GV    +     
Sbjct: 116 ---------VFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGV----YCNENA 162

Query: 154 LSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           ++TV  +C        G Q+ GS+I+SGL  + V + NSLI M+G    +  A  VF +M
Sbjct: 163 MATVIRSCGVLVDKMLGYQVLGSVIKSGLD-TTVSVANSLISMFGNCDSIEEASCVFDDM 221

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +E D ISWNS+I+   ++G+ E +L+ F  MRY+    D  TIS ++  C   +NL  G+
Sbjct: 222 KERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGR 281

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +  + VK G  SN  V ++ + ++S+  + ED+  +F ++   D    N M++++   G
Sbjct: 282 GLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNG 341

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
               ALEL   ML+        T +  LS+     +E     H+  I  G   N ++ ++
Sbjct: 342 NYPRALELLIEMLQTRKATNYVTFTTALSA--CYNLETLKIVHAFVILLGLHHNLIIGNA 399

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MY K GS+ ++  +   +  RD V+WN ++ G   N      ++ F  L EEG+P +
Sbjct: 400 LVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVN 459

Query: 447 RITLAAVLLA-CNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGK 501
            IT+  +L A  +    +D GM + + +     V+ G E      + +I +  Q G L  
Sbjct: 460 YITIVNLLSAFLSPDDLLDHGMPIHAHI-----VVAGFELETFVQSSLITMYAQCGDLNT 514

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYG 529
           +  I   +      S W +IL A+A YG
Sbjct: 515 SNYIFDVLA-NKNSSTWNAILSANAHYG 541



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 188/370 (50%), Gaps = 6/370 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A  VFD++PE +  SWN+++SG+   G+   A++ F  M   GVRPS +  + 
Sbjct: 4   KFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAAS 63

Query: 153 LLSTVS-SACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           L++    S C  +   Q+H  +I+ GL+  +V +G SL+  YG  G +     VF  +EE
Sbjct: 64  LVTACDRSGCMTEGAFQVHAHVIKCGLA-CDVFVGTSLLHFYGTFGWVAEVDMVFKEIEE 122

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +I+SW SL+ G   +G  +  +  +  +R  G   +E  ++ VI +C  L +   G QV
Sbjct: 123 PNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQV 182

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G  +   V ++ I +F  C+ +E++  +F+ +   D    N +I+     G  
Sbjct: 183 LGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHC 242

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E +LE F  M     +    T+S +L        +  G   H M +KSG +SN  V +SL
Sbjct: 243 EKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSL 302

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY++ G  + +  +F K+ +RDL+SWN++M     NG     L++  E+L+     + 
Sbjct: 303 LSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNY 362

Query: 448 ITLAAVLLAC 457
           +T    L AC
Sbjct: 363 VTFTTALSAC 372



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 150/319 (47%), Gaps = 8/319 (2%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G + +A  VF  M E +  SWN+L+SG    G+ + A+  F  M   G  P  Y 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 249 ISIVINACTKLRNLDKGK-QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            + ++ AC +   + +G  QV A  +K G   +  V ++ +  +     + +   +F+++
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GS 366
           +  +      ++  Y   G  +  + +++ + R+ +   E  ++ V+ S  +   +  G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q     IKSG D+   VA+SL+ M+    SI+ ++ +F  + +RD +SWN+I+     NG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              ++L+ F ++       D IT++A+L  C     +  G  +   +     V  G E  
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMV-----VKSGLESN 295

Query: 487 ACIID-LLCQAGQLGKAID 504
            C+ + LL    Q GK+ D
Sbjct: 296 VCVCNSLLSMYSQAGKSED 314



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 51/262 (19%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H+++ S S    +I    +    D  + +H  + K GF ++ Y+ N  +D+Y + G  DD
Sbjct: 559 HLDQFSFSVAHAIIG---NLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDD 615

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYAS 124
           V ++  +   ++  SWNI +  L +      A + F E+ +    PD V++ S++S  + 
Sbjct: 616 VFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSH 675

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
            G  D  L  FS M  +   P+G    +                                
Sbjct: 676 GGLVDEGLAYFSSMSTKFGVPTGIEHCV-------------------------------- 703

Query: 185 SLIDMYGKLGVLYYAFGVFLN---MEELDIISWNSLISGCFNSGYGEL---ALDQFYSMR 238
            +ID+ G+ G L  A   F+N   +   D++ W SL++ C   G  EL   A D+ + + 
Sbjct: 704 CIIDLLGRAGKLTEAEN-FINKMPVPPTDLV-WRSLLAACKIHGNLELARKAADRLFELD 761

Query: 239 YSGYSPDEYTISIVINACTKLR 260
               S D+    +  N C   R
Sbjct: 762 ----SSDDSAYVLYSNVCASTR 779



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K GSI+ +  +F K+ +R+  SWN +M G  + G   + +  F  +LE G+ P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII----DLLCQAGQLG--KAI 503
            A+++ AC+  G + +G     A   + G+       AC +     LL   G  G    +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGL-------ACDVFVGTSLLHFYGTFGWVAEV 113

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           D+      +P    W S++   A  G VK   +V  R+
Sbjct: 114 DMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRL 151


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 198/698 (28%), Positives = 329/698 (47%), Gaps = 95/698 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS----------------R 62
           S L+  C+  + F   K +H  L +      + L N  + LYS                R
Sbjct: 66  SSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGR 125

Query: 63  FGTSD------------------DVLQLFDEIPQKNCISWNICLRGLLKS---------- 94
           FG  D                  D ++LF E  +   +  + C   ++++          
Sbjct: 126 FGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVG 185

Query: 95  -------------------------------DNLDTALKVFDEIPEPDVVSWNSMISGYA 123
                                          ++ + A KVFD++ E +VV+W  MI+   
Sbjct: 186 RVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCM 245

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLS 176
             G+   A+  F  M L G     FT    LS+V SAC        G+Q+H   IRSGL+
Sbjct: 246 QMGFPREAIRFFLDMVLSGFESDKFT----LSSVFSACAELENLSLGRQLHSWAIRSGLA 301

Query: 177 LSNVVLGNSLIDMYGKL---GVLYYAFGVFLNMEELDIISWNSLISGCF-NSGYGELALD 232
                +  SL+DMY K    G +     VF  M++  ++SW +LI+G   N      A++
Sbjct: 302 DD---VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAIN 358

Query: 233 QFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
            F  M   G+  P+ +T S    AC  + +   GKQV   + K G  SNS V ++ I +F
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMF 418

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
            KC+R+ED+   FE L   +    N  +    R    E A EL   +   ++  + FT +
Sbjct: 419 VKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFA 478

Query: 352 CVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            +LS +  +  +  G Q HS  +K G   N  V ++L+ MY+K GSID+++ +F  +D R
Sbjct: 479 SLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNR 538

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           +++SW +++ G  ++G A   L+ F ++ +EG+ P+ +T  A+L AC++ G V +G   F
Sbjct: 539 NVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHF 598

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
           ++M E++ + P  EHYAC++DLLC+AG L  A +  +TMPFQ    +W + L A  ++ +
Sbjct: 599 NSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSN 658

Query: 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIG 590
            +L +  A ++++     P  Y  L+  YA  G+WE    +++ M++  + K  GCSWI 
Sbjct: 659 TELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSWIE 718

Query: 591 IKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + ++++ F  G+  H    +IY  L  L  E++  G V
Sbjct: 719 VGDKVHKFYVGDTSHPNAHQIYDELDWLITEIKRCGYV 756



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 171/342 (50%), Gaps = 18/342 (5%)

Query: 131 ALEMFSKMQLQGVRP-SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
           A+     M   G+RP    TFS LL +   A H   GK +H  +I   +   + VL NSL
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIE-PDSVLYNSL 103

Query: 187 IDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           I +Y K G L  A  VF  M      D++SW+++++   N+G    A+  F      G  
Sbjct: 104 ISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLV 163

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATIDLFSKC-NRLEDSV 301
           P++Y  + VI AC+    +  G+ +    +K G F S+  V  + ID+F K  N  E++ 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           ++F+++   +     +MI+   + GF   A+  F  M+       +FTLS V S+   + 
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT---GSIDSSTEIFVKLDKRDLVSWNT 417
            +  G Q HS AI+SG   +  V  SL++MYAK    GS+D   ++F ++    ++SW  
Sbjct: 284 NLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTA 341

Query: 418 IMMGLTQN-GRAAETLDVFEELLEEG-LPPDRITLAAVLLAC 457
           ++ G  QN   A E +++F E++ +G + P+  T ++   AC
Sbjct: 342 LITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 190/467 (40%), Gaps = 91/467 (19%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S  + + HV     ++ S     C +       K + GH FK G  +++ + N  + ++ 
Sbjct: 361 SEMITQGHVEPNHFTFSSAF-KACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFV 419

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
           +    +D    F+ + +KN +S+N  L G  ++ + + A ++  EI E ++         
Sbjct: 420 KCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAEREL--------- 470

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLS 178
                               GV  S FTF+ LLS    V S   G+QIH  +++ GLS +
Sbjct: 471 --------------------GV--SAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCN 508

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
             V  N+LI MY K G +  A  VF  M+  ++ISW S+I+G    G+ E  L+ F  M 
Sbjct: 509 QPVC-NALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMT 567

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G  P+E T   +++AC+ +  + +G + F                         N + 
Sbjct: 568 KEGVKPNEVTYVAILSACSHVGLVSEGWRHF-------------------------NSMY 602

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           +  ++  +++ +       M+    R G    A E    M      P +  +    + + 
Sbjct: 603 EDHKIKPKMEHY-----ACMVDLLCRAGLLTDAFEFINTM------PFQADVLVWRTFLG 651

Query: 359 IPPVEHGSQFHSMAIKS--GFDSNAVVAS-SLMEMYAKTGSIDSSTEIFVKLDKRDLV-- 413
              V   ++   +A +    FD N   A   L  +YA  G  + STE+  K+ +R+LV  
Sbjct: 652 ACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKE 711

Query: 414 ---SW-------NTIMMGLTQNGRAAETLDVFEELLEE----GLPPD 446
              SW       +   +G T +  A +  D  + L+ E    G  PD
Sbjct: 712 GGCSWIEVGDKVHKFYVGDTSHPNAHQIYDELDWLITEIKRCGYVPD 758



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query: 331 ALELFQLMLREDIRPTE-FTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           A+    LM R+ IRP +  T S +L S I       G   H+  I+   + ++V+ +SL+
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLI 104

Query: 389 EMYAKTGSIDSSTEIFV---KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            +Y+K+G +  + ++F    +  KRD+VSW+ +M     NGR  + + +F E LE GL P
Sbjct: 105 SLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVP 164

Query: 446 DRITLAAVLLACNYGGFVDKGMLVF 470
           +     AV+ AC+   FV  G ++ 
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVIL 189


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 296/532 (55%), Gaps = 8/532 (1%)

Query: 104 FDEIPEPDVVSWNSMISGYASC-GYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSS 159
           F  I +P   S+N MI G ++    S  ALE +S+M+  G++P+  T+  L    S + +
Sbjct: 83  FSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
             +G+  H S+IR GL     V  +SLI MY + G +  A  VF  + + D++SWNS+IS
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHV-SHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMIS 201

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G     +   A+  F  M  +G+ P+E ++  V+ AC +L +L  G  V    V+     
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           N  + SA I ++ KC  L  + R+F+ + + D    N MI+ Y + G  E A++LFQ M 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 340 REDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                P + TL  +LS+   I  ++ G Q    A + GF  +  V ++L++MYAK GS+D
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVLLA 456
           ++  +F  +  ++ VSWN ++  L  +G+A E L +F+ ++ EG  + P+ IT   VL A
Sbjct: 382 NAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSA 441

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C + G VD+G  +F  M   +G++P  EHY+C++DL  +AG L +A D   TMP +P   
Sbjct: 442 CVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           I  ++L A     ++ ++E V + +++L+  +   Y + ++ YA   RW+   R++ +M+
Sbjct: 502 ILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMK 561

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G++K  GCSWI I ++++ F+AG++ H    +I+ +L LL  ++  EG +
Sbjct: 562 QKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYI 613



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 178/322 (55%), Gaps = 16/322 (4%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVFDEI + D+VSWNSMISGY+   ++  A+ +F +M   G +P+  +    L +V  
Sbjct: 181 ARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS----LVSVLG 236

Query: 160 ACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           AC        G  +   ++ + ++L N  +G++LI MYGK G L  A  +F +M++ D +
Sbjct: 237 ACGELGDLKLGTWVEEFVVENKMTL-NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKV 295

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +WN++I+G   +G  E A+  F  MR S  +PD+ T+  +++AC  +  LD GKQV   +
Sbjct: 296 TWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYA 355

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            + GF  +  V +A +D+++KC  L+++ R+F  +   +    N MIS    +G  + AL
Sbjct: 356 SERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEAL 415

Query: 333 ELFQLMLRE--DIRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSMAIKSGFDSNAVVASSLM 388
            LF+ M+ E   + P + T   VLS+ +    V+ G + FH M+   G        S ++
Sbjct: 416 ALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMV 475

Query: 389 EMYAKTGSIDSSTEIFVKLDKR 410
           +++++ G ++ + +  + + ++
Sbjct: 476 DLFSRAGHLEEAWDFVMTMPEK 497



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 16/228 (7%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +L +A ++FD + + D V+WN+MI+GYA  G S+ A+++F  M++    P   T   
Sbjct: 275 KCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIG 334

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +LS  +S      GKQ+       G    +V +G +L+DMY K G L  AF VF  M   
Sbjct: 335 ILSACASIGALDLGKQVEIYASERGFQ-DDVYVGTALVDMYAKCGSLDNAFRVFYGMPNK 393

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISIVINACTKLRNLDKGKQ 267
           + +SWN++IS     G  + AL  F SM   G   SP++ T   V++AC     +D+G++
Sbjct: 394 NEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRR 453

Query: 268 VF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +F  +S   G +      S  +DLFS+   LE++         WD+ +
Sbjct: 454 LFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA---------WDFVM 492



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 65/285 (22%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + D  K +  +  + GF    Y+G   +D+Y++ G+ D+  ++F  +P KN
Sbjct: 335 ILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKN 394

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               N+MIS  A  G +  AL +F  M  
Sbjct: 395 EVSW-------------------------------NAMISALAFHGQAQEALALFKSMMN 423

Query: 141 QG--VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           +G  V P+  TF  +L    SAC    +H  ++  G  L                 ++  
Sbjct: 424 EGGTVSPNDITFVGVL----SAC----VHAGLVDEGRRL---------------FHMMSS 460

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +FG+   +E      ++ ++     +G+ E A D   +M      PDE  +  ++ AC K
Sbjct: 461 SFGLVPKIEH-----YSCMVDLFSRAGHLEEAWDFVMTM---PEKPDEVILGALLGACQK 512

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            +N+D  ++V  L +++   SNS     +  L++   R +DS R+
Sbjct: 513 RKNIDISERVMKLLLELE-PSNSGNYVISSKLYANLRRWDDSARM 556


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 183/617 (29%), Positives = 316/617 (51%), Gaps = 51/617 (8%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS ++  C S ++    + IHG + K GF+   ++G   + +YSR G             
Sbjct: 182 CSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCG------------- 228

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                             +L  A KV+  +   DV   N MIS Y   G  + A+ +F  
Sbjct: 229 ------------------DLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLH 270

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +   G+ P+ +TF+     V SAC+G       + +HG  I+ G     + +GN+++ +Y
Sbjct: 271 LLGSGLEPNDYTFT----NVISACNGDIDVEVLRVLHGMCIKCGCG-DEISVGNAIVSVY 325

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G+L  A   F  M E +++SW +L+SG   +G G+ AL+ F  +   G   D    +
Sbjct: 326 VKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFA 385

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +++ C++ +NL  G Q+    VK+G++ +  V +A IDL++KC +L  +  +F  L   
Sbjct: 386 TLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDK 445

Query: 311 DYAVINVMISTYGRYGFG---EVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGS 366
           +    N ++S Y     G   E A+ LF  +   DI+P   T + +LS S     +  G 
Sbjct: 446 NIVSFNAILSGY----IGADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGK 501

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H+  IK+GF++N  V ++++ MYAK GSI  + ++F  ++  D +SWN ++     +G
Sbjct: 502 CLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHG 561

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           +  + L +FEE+ +E   PD IT+ +VL AC+Y G +++G  +F+ M+ +YG+ P  EH+
Sbjct: 562 QGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHF 621

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC++DLL +AG L +A+   +  PF     +W +++    ++GD+   +  ++ ++DL  
Sbjct: 622 ACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAP 681

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
                Y L++  YA  G      RV+ VM    ++K  G SWI I N+++ F A +  H 
Sbjct: 682 EEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDKDHP 741

Query: 607 GGQKIYLVLRLLTWEME 623
             ++IY  L LL  EM+
Sbjct: 742 ESKEIYAKLDLLKSEMK 758



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 153/297 (51%), Gaps = 2/297 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ IH  + + G   ++   GN+L+++YGK   L  A  VF  M   + I+W +LI G  
Sbjct: 97  GQAIHAFLAKLGYQ-NDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHL 155

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
                E        M + G   +E+T S+++ AC  L NL +G+Q+    +K GF  +  
Sbjct: 156 QVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVF 215

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ I ++S+C  L  + +++  L   D   +N MIS YG+ G GE A+ +F  +L   
Sbjct: 216 VGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSG 275

Query: 343 IRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           + P ++T + V+S+      VE     H M IK G      V ++++ +Y K G ++ + 
Sbjct: 276 LEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAE 335

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           + F  + +R+LVSW  ++ G  +NG   + L+ F ++LE G+  D    A +L  C+
Sbjct: 336 KSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCS 392


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/577 (29%), Positives = 303/577 (52%), Gaps = 45/577 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+    F + + +H  + K G  A  ++ N  +D+Y++ G                    
Sbjct: 133 CVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAG-------------------- 171

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                      +L+ A KVFD +PE +VVSW SM+SG    G ++  L +F++M+   V 
Sbjct: 172 -----------DLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVH 220

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           PS +T    + +V +AC        G+ IHGS+I+ GLS +N  +  SL+DMY K   + 
Sbjct: 221 PSEYT----MVSVLAACAMLGGLHQGRWIHGSVIKYGLS-TNSFISASLLDMYAKCEKVE 275

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +E +DI+ W ++I G   +     AL  F   ++    P+  TI+ VI+A  
Sbjct: 276 DARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASA 335

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +LR+L  G+ V A+ VK+G + + +V +A +D+++KC  L ++  +F ++   D    N 
Sbjct: 336 QLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNS 395

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSG 376
           M++ Y   G    +L LF  M  + I P   ++   LS+ + +  +  G  FH+ AIK  
Sbjct: 396 MMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYA 455

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F SN  V ++L+ +Y+K   + S+  +F  +  R+ V+W+ ++ G    G +A ++D+F 
Sbjct: 456 FMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFN 515

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+L+E + P+ +   ++L AC++ G V  G   F +M   + + P  +HYAC++D++ +A
Sbjct: 516 EMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARA 575

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G L +A++    MP + G S+W S L    ++  ++  E   ++M  L   +P  Y L++
Sbjct: 576 GNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMS 635

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
             Y   GRW+    +++ M++ G+ K+ GCS +G +N
Sbjct: 636 NLYTSYGRWDKSQTIRRWMQEQGLVKLPGCSSVGHEN 672



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 198/370 (53%), Gaps = 12/370 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L +A  V D  P PD  ++  M+      G    A+ +   M+ +   P+     ++LS
Sbjct: 70  DLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRC--PAAAQADVVLS 127

Query: 156 TVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
               AC       +G+++H  ++++G +   V+  NSL+DMY K G L  A  VF  + E
Sbjct: 128 LALKACVRSADFRYGRRLHCDVVKAGGADGFVM--NSLVDMYAKAGDLENARKVFDRVPE 185

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW S++SG   +G  E  L  F  MR     P EYT+  V+ AC  L  L +G+ +
Sbjct: 186 RNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWI 245

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G  +NS + ++ +D+++KC ++ED+ R+F++L+  D  +   MI  Y +    
Sbjct: 246 HGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRP 305

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             AL+LF       I P   T++ V+S S  +  +  G   H++ +K G   + VV ++L
Sbjct: 306 LDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNAL 365

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK  ++  +  IF ++  +D+V+WN++M G ++NG A E+L +F  +  +G+ PD 
Sbjct: 366 VDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDA 425

Query: 448 ITLAAVLLAC 457
           I++   L AC
Sbjct: 426 ISVVNALSAC 435



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 140/329 (42%), Gaps = 52/329 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I      +     +++H    KLG      + N  +D+Y++     +   +F  I  
Sbjct: 328 ATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILI 387

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ ++WN                               SM++GY+  G ++ +L +F++M
Sbjct: 388 KDVVAWN-------------------------------SMMAGYSENGMANESLVLFNRM 416

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           ++QG+ P   +    LS    ++    GK  H   I+    +SN+ +  +L+++Y K   
Sbjct: 417 RMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAF-MSNIYVNTALLNLYSKCAD 475

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF +M + + ++W+++I G    G    ++D F  M      P+E   + +++A
Sbjct: 476 LPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSA 535

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           C+    +  GK+ F +++       +    +  +D+ ++   LE+++   + +       
Sbjct: 536 CSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMP------ 589

Query: 315 INVMISTYG----------RYGFGEVALE 333
           I   IS +G          R  FGE A++
Sbjct: 590 IKAGISVWGSFLHGCKLHSRLEFGEEAIK 618


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 283/551 (51%), Gaps = 67/551 (12%)

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY------- 190
            G+R    T + LL   +   S   GK +H  +  +GL   N  L N LI+MY       
Sbjct: 44  NGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYP 103

Query: 191 ------------------------GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
                                    KLG +  A  +F  M E D++SWN+++     SG+
Sbjct: 104 SAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGF 163

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
              AL  +  +R  G   +EY+ + ++N C K++ L+  KQ     +  GFLSN ++ S+
Sbjct: 164 CNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSS 223

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG-------------------- 326
            +D ++KC+ + D+ RLF+++   D      M+S Y ++G                    
Sbjct: 224 VLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAW 283

Query: 327 -----------FGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMAIK 374
                       G  ALELF  M+  +IRP +FT S C+ +S  I  + HG Q H   I+
Sbjct: 284 TSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIR 343

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLD 433
           +    N +V SSL++MY+K G ++    +F  + DK D+V WNTI+  L Q+GR  E + 
Sbjct: 344 TNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQ 403

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F++++  G+ PDRITL  +L AC++ G V +G+ ++ ++   +GV+P +EHYAC+IDLL
Sbjct: 404 MFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLL 463

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG     ++    MP +P   IW ++L    ++G+++    VAE++++L   S   Y 
Sbjct: 464 GRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYV 523

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL+  +A  GRWE +  V+++M +  + K    SWI I+N++++F A +  H   + IYL
Sbjct: 524 LLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYL 583

Query: 614 VLRLLTWEMED 624
            L+ L   ME+
Sbjct: 584 ALKQLAGHMEE 594



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 229/459 (49%), Gaps = 40/459 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+ +C + KS    K +H HL   G    +T+L N  +++YS+ G      ++FDE+  +
Sbjct: 56  LLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTR 115

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  SWN  L G  K   +  A K+FD++PE DVVSWN+M+  YA  G+ + AL  + +++
Sbjct: 116 NLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELR 175

Query: 140 LQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G+  + ++F+ LL+    V      KQ HG ++ +G  LSN+V+ +S++D Y K   +
Sbjct: 176 RLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGF-LSNLVISSSVLDAYAKCSEM 234

Query: 197 ------------------------YYAFG-------VFLNMEELDIISWNSLISGCFNSG 225
                                   Y  +G       +F  M E + ++W SLI+G     
Sbjct: 235 GDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHD 294

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
            G  AL+ F  M      PD++T S  + A   + +L+ GKQ+    ++     N+IV+S
Sbjct: 295 LGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVS 354

Query: 286 ATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           + ID++SKC  LE    +F+ + D+WD  + N +IS+  ++G G+ A+++F  M+R  ++
Sbjct: 355 SLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMK 414

Query: 345 PTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           P   TL  +L++      V+ G + + S+    G   N    + L+++  + G  D+   
Sbjct: 415 PDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMN 474

Query: 403 IFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
              K+  K +   WN ++     +G      +V E+++E
Sbjct: 475 QLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIE 513



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 182/343 (53%), Gaps = 9/343 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L++ C+  K  + +K  HG +   GF ++  + +  LD Y++     D  +LFDE+  ++
Sbjct: 189 LLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRD 248

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ++W   + G  +  +++ A ++FD +PE + V+W S+I+GYA       ALE+F+KM  
Sbjct: 249 VLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMA 308

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             +RP  FTFS  L   ++++S  HGKQIHG +IR+ +   N ++ +SLIDMY K G L 
Sbjct: 309 LNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIR-PNTIVVSSLIDMYSKCGCLE 367

Query: 198 YAFGVF-LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
               VF L  ++ D++ WN++IS     G G+ A+  F  M   G  PD  T+ +++NAC
Sbjct: 368 VGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNAC 427

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAV 314
           +    + +G +++ +++   G + N    +  IDL  +    +  +   E++  + +  +
Sbjct: 428 SHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEI 487

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            N ++     +G  E   E+ + ++  D  P       +LSSI
Sbjct: 488 WNALLGVCRMHGNIEFGREVAEKIIELD--PQSSAAYVLLSSI 528


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 288/542 (53%), Gaps = 11/542 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +LD A +VFD   E DVVSWN+M+  YA  G+   A  +F++M  +G+ PS  T     +
Sbjct: 275 HLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNAST 334

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
             SS   G+ IH   +  GL   ++VLGN+L+DMY + G    A  +F  +   + +SWN
Sbjct: 335 GCSSLRFGRMIHACALEKGLD-RDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWN 392

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYT----ISIVINACTKLRNLDKGKQVFAL 271
           ++I+G    G  + AL+ F  M+  G +P   T    +  V +   + R + +G+++ + 
Sbjct: 393 TMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR 452

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ---LDRWDYAVINVMISTYGRYGFG 328
            V  G+ S   + +A + +++ C  ++++   F++    DR D    N +IS+  ++G G
Sbjct: 453 IVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHG 512

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + AL  F+ M    + P + T   VL +      +  G   H     SG +SN  VA++L
Sbjct: 513 KRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATAL 572

Query: 388 MEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
             MY + GS++S+ EIF K+  +RD+V +N ++   +QNG A E L +F  + +EG  PD
Sbjct: 573 ASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPD 632

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
             +  +VL AC++GG  D+G  +F +M++ YG+ P E+HYAC +D+L +AG L  A ++ 
Sbjct: 633 EQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELI 692

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             M  +P   +W+++L A   Y DV         + +L       Y +L+   A  G+W+
Sbjct: 693 RCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWD 752

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V+  M   G+ K  G SWI IK+R++ F AG+  H   ++IY  L  L  E+ + G
Sbjct: 753 EAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIG 812

Query: 627 CV 628
            V
Sbjct: 813 YV 814



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 216/462 (46%), Gaps = 45/462 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         ++IH  + + G    + L N  L +Y   G     + LF+ +    
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM---- 189

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                       E D+VSWN+ I+  A  G  D ALE+F +MQL
Sbjct: 190 ----------------------------ERDLVSWNAAIAANAQSGDLDMALELFQRMQL 221

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +GVRP+  T  I LS  +     + IH  +  SGL    +V+  +L   Y +LG L  A 
Sbjct: 222 EGVRPARITLVITLSVCAKIRQARAIHSIVRESGLE-QTLVVSTALASAYARLGHLDQAK 280

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF    E D++SWN+++      G+   A   F  M + G  P + T+   +NA T   
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTL---VNASTGCS 337

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +L  G+ + A +++ G   + ++ +A +D++++C   E++  LFE +   +    N MI+
Sbjct: 338 SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIA 396

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-----HGSQFHSMAIKS 375
              + G  + ALELFQ M  E + P   T   +L ++   P E      G + HS  +  
Sbjct: 397 GSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSC 456

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVK---LDKRDLVSWNTIMMGLTQNGRAAETL 432
           G+ S   + +++++MYA  G+ID +   F +    D+ D+VSWN I+  L+Q+G     L
Sbjct: 457 GYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRAL 516

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
             F  +   G+ P++IT  AVL AC     + +G++V   ++
Sbjct: 517 GFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLR 558



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 189/368 (51%), Gaps = 11/368 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  LR  LK ++L    +VF  +   D  SW ++I+ Y   G +  A+ MF +MQ +GVR
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVR 125

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               TF  +L   + +     G+ IH  ++ SGL     VL N L+ +YG  G +  A  
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLE-GKSVLANLLLHIYGSCGCVASAML 184

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  ME  D++SWN+ I+    SG  ++AL+ F  M+  G  P   T+ I ++ C K+R 
Sbjct: 185 LFERMER-DLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIR- 242

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
             + + + ++  + G     +V +A    +++   L+ +  +F++    D    N M+  
Sbjct: 243 --QARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGA 300

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNA 381
           Y ++G    A  LF  ML E I P++ TL  V +S     +  G   H+ A++ G D + 
Sbjct: 301 YAQHGHMSEAALLFARMLHEGIPPSKVTL--VNASTGCSSLRFGRMIHACALEKGLDRDI 358

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           V+ ++L++MY + GS + +  +F  +   + VSWNT++ G +Q G+    L++F+ +  E
Sbjct: 359 VLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLE 417

Query: 442 GLPPDRIT 449
           G+ P R T
Sbjct: 418 GMAPVRAT 425



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 197/404 (48%), Gaps = 21/404 (5%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G++IH  ++  GL      LGN L+ +Y K   L     VF  +E  D  SW ++I+  
Sbjct: 47  QGRRIHARIVSLGLEEE---LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAY 103

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
              G  + A+  F+ M+  G   D  T   V+ AC +L +L +G+ + A  V+ G    S
Sbjct: 104 TEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKS 163

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           ++ +  + ++  C  +  ++ LFE+++R D    N  I+   + G  ++ALELFQ M  E
Sbjct: 164 VLANLLLHIYGSCGCVASAMLLFERMER-DLVSWNAAIAANAQSGDLDMALELFQRMQLE 222

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            +RP   TL   LS      +      HS+  +SG +   VV+++L   YA+ G +D + 
Sbjct: 223 GVRPARITLVITLS--VCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAK 280

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F +  +RD+VSWN ++    Q+G  +E   +F  +L EG+PP ++TL      C+   
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLR 340

Query: 462 FVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI- 517
           F   G ++ +   E   +  ++ G      ++D+  + G   +A  +   +   PG ++ 
Sbjct: 341 F---GRMIHACALEKGLDRDIVLGN----ALLDMYTRCGSPEEARHLFEGI---PGNAVS 390

Query: 518 WESILRASAIYGDVKLTENVAERM-MDLQLPSPLPYSLLTQAYA 560
           W +++  S+  G +K    + +RM ++   P    Y  L +A A
Sbjct: 391 WNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVA 434



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/534 (25%), Positives = 227/534 (42%), Gaps = 95/534 (17%)

Query: 1   MSSYLKKAHVNKASLSYCS-----------QLIDRCLSFKSFDFAKTIHGHLFKLGFNAH 49
           + +Y +  H+++A+L +              L++      S  F + IH    + G +  
Sbjct: 298 LGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRD 357

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
             LGN  LD+Y+R G+ ++   LF+ IP  N +SWN                        
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWN------------------------ 392

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-------ACH 162
                  +MI+G +  G    ALE+F +MQL+G+ P   T+  LL  V+S          
Sbjct: 393 -------TMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAE 445

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN--MEEL-DIISWNSLIS 219
           G+++H  ++  G + S   +G +++ MY   G +  A   F    ME+  D++SWN++IS
Sbjct: 446 GRKLHSRIVSCGYA-SEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIIS 504

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
                G+G+ AL  F  M   G +P++ T   V++AC     L +G  V       G  S
Sbjct: 505 SLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMES 564

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLM 338
           N  V +A   ++ +C  LE +  +FE++    D  + N MI+ Y + G    AL+LF  M
Sbjct: 565 NVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRM 624

Query: 339 LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            +E  RP E +   VLS+       HG                             G  D
Sbjct: 625 QQEGSRPDEQSFVSVLSACS-----HG-----------------------------GLAD 650

Query: 399 SSTEIFVKLDKRDLV--SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
              EIF  + +   +  S +     +   GRA    D  E +    + P  +    +L A
Sbjct: 651 EGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGA 710

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEH-YACIIDLLCQAGQLGKAIDITSTM 509
           C     VD+G L  S ++E   + PG+E  Y  + ++L  AG+  +A ++ + M
Sbjct: 711 CRKYRDVDRGRLANSMVRE---LDPGDESAYVVLSNILAGAGKWDEAAEVRTEM 761


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/597 (29%), Positives = 305/597 (51%), Gaps = 47/597 (7%)

Query: 55  RCLDLYSRFGTSDDVLQLFDEIPQKNCISWN---------------ICLRGLLKSDNLD- 98
           + +  Y+  G   +  ++FD + +KN   WN               ICL  ++    ++ 
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 99  ----TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSIL 153
               +A ++FD++ + DV+SWNSMISGY S G ++  L ++ +M   G+     T  S+L
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 154 LSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +    S     GK +H   I+S      +   N+L+DMY K G L  A  VF  M E ++
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFE-RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 179

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW S+I+G    G+ + A+     M   G   D   I+ +++AC +  +LD GK V   
Sbjct: 180 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 239

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
                  SN  V +A +D+++KC  +E +  +F  +   D    N M+            
Sbjct: 240 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------- 288

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
                     +++P   T++C+L +   +  +E G + H   +++G+ S+  VA++L+++
Sbjct: 289 ----------ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 338

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G +  +  +F  +  +DLVSW  ++ G   +G   E +  F E+ + G+ PD ++ 
Sbjct: 339 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSF 398

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            ++L AC++ G +++G   F  MK ++ + P  EHYAC++DLL + G L KA     T+P
Sbjct: 399 ISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP 458

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
             P  +IW ++L    IY D++L E VAER+ +L+  +   Y LL   YA   +WE + R
Sbjct: 459 IAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKR 518

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH-GGQKIYLVLRLLTWEMEDEG 626
           +++ + K G+ K  GCSWI IK R+  F +G    H   +KI  +L+ +  +M++EG
Sbjct: 519 MREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEG 575



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 184/404 (45%), Gaps = 61/404 (15%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +    K +H    K  F       N  LD+YS+ G  D  L++F+++ ++N    
Sbjct: 123 CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN---- 178

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                      VVSW SMI+GY   G+SD A+ +  +M+ +GV+
Sbjct: 179 ---------------------------VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVK 211

Query: 145 PSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
                 + +L   +   S  +GK +H   I++    SN+ + N+L+DMY K G +  A  
Sbjct: 212 LDVVAITSILHACARSGSLDNGKDVH-DYIKANNMASNLFVCNALMDMYAKCGSMEGANS 270

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M   DIISWN+++        GEL              PD  T++ ++ AC  L  
Sbjct: 271 VFSTMVVKDIISWNTMV--------GEL-------------KPDSRTMACILPACASLSA 309

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L++GK++    ++ G+ S+  V +A +DL+ KC  L  +  LF+ +   D     VMI+ 
Sbjct: 310 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAG 369

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSN 380
           YG +G+G  A+  F  M    I P E +   +L +      +E G +F  + +K+ F+  
Sbjct: 370 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI-MKNDFNIE 428

Query: 381 AVVA--SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG 421
             +   + ++++ ++TG++  + +    L    D   W  ++ G
Sbjct: 429 PKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 51/213 (23%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  + +  K IHG++ + G+++  ++ N  +DLY + G       LFD IP K+
Sbjct: 300 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 359

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW +                               MI+GY   GY + A+  F++M+ 
Sbjct: 360 LVSWTV-------------------------------MIAGYGMHGYGNEAIATFNEMRD 388

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDM 189
            G+ P   +F  +L   S        H  ++  G     ++  +            ++D+
Sbjct: 389 AGIEPDEVSFISILYACS--------HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDL 440

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
             + G L  A+     +    D   W +L+ GC
Sbjct: 441 LSRTGNLSKAYKFIETLPIAPDATIWGALLCGC 473


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 178/577 (30%), Positives = 304/577 (52%), Gaps = 18/577 (3%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           FDF    H   F        YL N C  L   SR       L + +   Q   +S  + +
Sbjct: 21  FDFRTNYHSRSF-------NYLLNCCSSLPDLSRI----HALVVTNGCGQNLLLSTKLII 69

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                +  +D A K+FD++P+ DV  WN++I GYA  G  + AL ++S M   G+ P  +
Sbjct: 70  TACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNY 129

Query: 149 TFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           TF  ++   + +S+   GK++H ++++ G   S+V + +SL+ MY + G       VF  
Sbjct: 130 TFPFVVRSCAVLSALREGKEVHCNIVKHGFD-SDVFVQSSLVAMYSQSGETLGMELVFGE 188

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   +I+SW ++I+G   + Y +  L  F  M  SG  P+  T+  V+ AC  L  L+ G
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG 248

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           K +    +K+G   +  + +A I L+ KC  +E +  LF+ +   +    N MI+ Y + 
Sbjct: 249 KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQN 308

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
             G  A++LF+ M  E +     T+  V+S+   +  +  G   H +  + G + N  + 
Sbjct: 309 NAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSIT 368

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L++MYAK G+ID + E+F +L  R +VSW +++     +G   + L +F  + +EG+ 
Sbjct: 369 NALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVK 428

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+  T AAV  AC + G V++G   F +M  +Y +MPG EH AC++DLL +AG L +A +
Sbjct: 429 PNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYE 488

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
               MP +P  S+W ++L +  I+ +++L E VAE++  L   +   Y L++  YA  GR
Sbjct: 489 FIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGR 548

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG 601
           WE   R++K+M +  + K+ G S + +  R +TF +G
Sbjct: 549 WEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFLSG 585



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 183/409 (44%), Gaps = 46/409 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    +    K +H ++ K GF++  ++ +  + +YS+ G +  +  +F E+  +N
Sbjct: 134 VVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRN 193

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                                ++I+GY    Y    L +F +M  
Sbjct: 194 IVSWT-------------------------------AVIAGYVQNRYFKEGLGVFREMVG 222

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            G +P+  T    L +V  AC        GK IHG  I+ G+   +V L N+LI +YGK 
Sbjct: 223 SGTQPNAVT----LVSVLPACAGLEFLNLGKLIHGYGIKLGVD-PDVSLTNALIALYGKC 277

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F  M   +++SWN++I+    +  G  A+  F  M+      D  T+  VI
Sbjct: 278 GNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVI 337

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +AC  L  L+ G+ +  L  + G   N  + +A ID+++KC  ++ +  +FE+L      
Sbjct: 338 SACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVV 397

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSM 371
               MI     +G GE AL+LF  M  E ++P  FT + V ++      VE G + F SM
Sbjct: 398 SWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESM 457

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                        + ++++  + GS+  + E   K+  + D+  W  ++
Sbjct: 458 MRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/552 (32%), Positives = 295/552 (53%), Gaps = 39/552 (7%)

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQI 166
           P  ++W  +I  YAS G   ++L  F+ ++  G+ P    F  LL   +   H    + +
Sbjct: 39  PHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSL 98

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGK----LGVLY------------YAFGV------FL 204
           H ++IR G    ++   N+L++MY K    L  L+            Y+  +      F 
Sbjct: 99  HAAVIRLGFHF-DLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFD 157

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M   D++SWN++I+G   +G  E AL+    M      PD +T+S ++   T+  N+ K
Sbjct: 158 RMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTK 217

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK++   +++ GF  +  + S+ ID+++KC ++E SV  F  L   D    N +I+   +
Sbjct: 218 GKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQ 277

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH------GSQFHSMAIKSGFD 378
            G  +  L  F+ ML+E ++P + + S V     IP   H      G Q H+  I+ GFD
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSV-----IPACAHLTALNLGKQLHAYIIRLGFD 332

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            N  +ASSL++MYAK G+I  +  IF K++   RD+VSW  I+MG   +G A + + +FE
Sbjct: 333 DNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFE 392

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+L +G+ P  +   AVL AC++ G VD+G   F++M+ ++GV PG EHYA + DLL +A
Sbjct: 393 EMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRA 452

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L +A D  S M  +P  S+W ++L A   + +++L E V  +++ +   +   + +++
Sbjct: 453 GRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMS 512

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             Y+   RW    +++  MRK G+ K   CSWI + N+++TF AG+  H    KI   L 
Sbjct: 513 NIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALN 572

Query: 617 LLTWEMEDEGCV 628
           +L  +ME EG V
Sbjct: 573 ILLEQMEKEGYV 584



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 221/443 (49%), Gaps = 30/443 (6%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           FK F+ A+++H  + +LGF+   Y  N  +++YS+F      L  F +    +   +++ 
Sbjct: 89  FKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSV- 147

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                    +D+  K+FD +P  DVVSWN++I+G A  G  + AL M  +M  + +RP  
Sbjct: 148 --------KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDS 199

Query: 148 FTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FT S +L   +   +   GK+IHG  IR G    +V +G+SLIDMY K   +  +   F 
Sbjct: 200 FTLSSILPIFTEHANVTKGKEIHGYAIRHGFD-KDVFIGSSLIDMYAKCTQVELSVCAFH 258

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            +   D ISWNS+I+GC  +G  +  L  F  M      P + + S VI AC  L  L+ 
Sbjct: 259 LLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNL 318

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTY 322
           GKQ+ A  +++GF  N  + S+ +D+++KC  ++ +  +F +++  D  +++   +I   
Sbjct: 319 GKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGC 378

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSM----AIKSG 376
             +G    A+ LF+ ML + ++P       VL++     +  E    F+SM     +  G
Sbjct: 379 AMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPG 438

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVF 435
            +  A VA    ++  + G ++ + +    + +    S W+T++       RA + +++ 
Sbjct: 439 LEHYAAVA----DLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAAC----RAHKNIELA 490

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
           E+++ + L  D   + A ++  N
Sbjct: 491 EKVVNKILLVDPGNMGAHVIMSN 513



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 33/216 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C    + +  K +H ++ +LGF+ + ++ +  LD+Y++ G       +F++I  
Sbjct: 304 SSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKI-- 361

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                      E+ + D+VSW ++I G A  G++  A+ +F +M
Sbjct: 362 ---------------------------EMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEM 394

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + GV+P    F  +L+  S A     G +   SM R       +    ++ D+ G+ G 
Sbjct: 395 LVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGR 454

Query: 196 LYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELA 230
           L  A+    NM EE     W++L++ C      ELA
Sbjct: 455 LEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELA 490


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 170/598 (28%), Positives = 312/598 (52%), Gaps = 48/598 (8%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y++    D+  +LFD +P K+ +SWN  L G  ++  +   L+ F+E+ E DVVSWN M+
Sbjct: 150 YAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMV 209

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
            G+   G  + + E F K+      P+  T S +      A  GK      +   + + N
Sbjct: 210 DGFVEVGDLNSSWEFFEKI------PNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN 263

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           VV  N++I  Y +   +  A  +F+ M E + ISW ++I+G    G  + A      M Y
Sbjct: 264 VVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPY 323

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
              +      + +I+   + + +D  +Q+F  +S++     + +  +  I  +S+C R++
Sbjct: 324 RNVAAQ----TAMISGYVQNKRMDDARQIFNQISIR-----DVVCWNTMIAGYSQCGRMD 374

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI--------------- 343
           +++ LF+Q+ + D    N M+++Y + G  + A+++F+ M  ++I               
Sbjct: 375 EALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGS 434

Query: 344 ----------------RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
                           +P + T +C LSS   +  ++ G Q H + +KSG+ ++  V+++
Sbjct: 435 YLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNA 494

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MYAK GSI S+  +F  +D  D+VSWN+++     NG   E L +F ++  EG+ PD
Sbjct: 495 LITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPD 554

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T   +L AC++ G +D+G+ +F  M + Y + P  EHYAC++DLL +AG+L +A  + 
Sbjct: 555 EVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 614

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             M       IW ++L A  I+G+++L +  AE++++ +      Y LL+   A  GRW+
Sbjct: 615 RGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWD 674

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
            + RV+++M++ G  K  G SWI ++NR++ F + +  H    ++  +LR LT  M +
Sbjct: 675 EVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSLTAHMRN 732



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 202/478 (42%), Gaps = 107/478 (22%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           +F+   + +T   N  +  +++ G   D  QLFD +PQ+N +SWN  +   L +D ++ A
Sbjct: 37  VFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEA 96

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
            ++FD++P  D+ SW  MI+ Y   G    A  +F+ +      P  +      + V+  
Sbjct: 97  RQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL------PYKWNPVCCNAMVAGY 150

Query: 161 CHGKQI-HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              +Q      +   +   ++V  NS++  Y + G +      F  M E D++SWN ++ 
Sbjct: 151 AKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVD 210

Query: 220 G-----------------------------CFNSGYGELA-----LDQF-------YSMR 238
           G                             C  + +G++A      DQ        ++  
Sbjct: 211 GFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAM 270

Query: 239 YSGYS---------------PDEYTIS--IVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            + Y                P++ +IS   VIN   ++  LD+ +Q+           N 
Sbjct: 271 IAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP----YRNV 326

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
              +A I  + +  R++D+ ++F Q+   D    N MI+ Y + G  + AL LF+ M+++
Sbjct: 327 AAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKK 386

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           DI                                    N +VAS     YA+ G +D++ 
Sbjct: 387 DI---------------------------------VSWNTMVAS-----YAQVGQMDAAI 408

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           +IF ++ ++++VSWN+++ GLTQNG   + L  F  +  EG  PD+ T A  L +C +
Sbjct: 409 KIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAH 466



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 204/419 (48%), Gaps = 36/419 (8%)

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
           G  D+ +++F  +  KN ++ N  +    K+  +  A ++FD +P+ ++VSWNSMI+ Y 
Sbjct: 29  GQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYL 88

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL----SN 179
                + A ++F KM  + +    ++++++++     C+ +    +  R+  +L     N
Sbjct: 89  HNDRVEEARQLFDKMPTRDL----YSWTLMIT-----CYTRNGELAKARNLFNLLPYKWN 139

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
            V  N+++  Y K      A  +F  M   D++SWNS+++G   +G   L L  F  M  
Sbjct: 140 PVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM-- 197

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
                D  + +++++   ++ +L+   + F        +S   +L      F++  ++ +
Sbjct: 198 --AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG----FARFGKIAE 251

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IP 358
           + RLF+Q+   +    N MI+ Y +    + A+ LF  M  ++      + + V++  + 
Sbjct: 252 ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN----SISWTTVINGYVR 307

Query: 359 IPPVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
           +  ++   Q  + M  +     N    ++++  Y +   +D + +IF ++  RD+V WNT
Sbjct: 308 MGKLDEARQLLNQMPYR-----NVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNT 362

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           ++ G +Q GR  E L +F++++++    D ++   ++ +    G +D  + +F  MKE+
Sbjct: 363 MIAGYSQCGRMDEALHLFKQMVKK----DIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 36/268 (13%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
           HLFK          N  +  Y++ G  D  +++F+E+ +KN +SWN  + GL ++ +   
Sbjct: 378 HLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLD 437

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           ALK F             M+ G+                  +G +P   TF+  LS+ + 
Sbjct: 438 ALKSF-------------MLMGH------------------EGQKPDQSTFACGLSSCAH 466

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 GKQ+H  +++SG + +++ + N+LI MY K G +  A  +F +++  D++SWNS
Sbjct: 467 LAALQVGKQLHQLVMKSGYA-TDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNS 525

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           LI+    +G G  AL  F+ M   G +PDE T   +++AC+ +  +D+G ++F   V+  
Sbjct: 526 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 585

Query: 277 FLSN-SIVLSATIDLFSKCNRLEDSVRL 303
            +   +   +  +DL  +  RLE++ +L
Sbjct: 586 NIEPLAEHYACMVDLLGRAGRLEEAFQL 613



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 98/245 (40%), Gaps = 53/245 (21%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C    +    K +H  + K G+    ++ N  + +Y++ G+      LF +I   + 
Sbjct: 461 LSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDV 520

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SW                               NS+I+ YA  G    AL++F KM+++
Sbjct: 521 VSW-------------------------------NSLIAAYALNGNGREALKLFHKMEVE 549

Query: 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG-----------NSLIDMY 190
           GV P   TF  +LS  S        H  +I  GL L   ++              ++D+ 
Sbjct: 550 GVAPDEVTFVGILSACS--------HVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLL 601

Query: 191 GKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           G+ G L  AF +   M+   +   W +L+  C    +G L L +F + +   + P + + 
Sbjct: 602 GRAGRLEEAFQLVRGMKINANAGIWGALLGAC--RIHGNLELAKFAAEKLLEFEPHKTSN 659

Query: 250 SIVIN 254
            ++++
Sbjct: 660 YVLLS 664


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/625 (27%), Positives = 310/625 (49%), Gaps = 38/625 (6%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V+   +++ S L+      ++ D  K +H H+ + G+     + N  +++Y + G     
Sbjct: 112 VSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCG----- 166

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     +++ A  VFD I +P+V SW  +I+ YA  G+  
Sbjct: 167 --------------------------DVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCM 200

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
             L + S+M   GV+P G+TF+ +L   + V +    K +H + I S     +  +G +L
Sbjct: 201 EVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTAL 260

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I++YGK G L  AFGVF+ ++  DI+SW+S+I+    SG  + A+     M   G  P+ 
Sbjct: 261 INLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNN 320

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T   V+ A T L+    GK++ A  V+ G+  +  + SA + ++     +E +  +FE 
Sbjct: 321 VTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFES 380

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHG 365
               D    + MI+ Y +      AL LF+ M  + ++P   T +S + +   +  +  G
Sbjct: 381 SRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRG 440

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
           +Q H      G D +  VA++L+ +Y K G ++ +  +F+ + K++L++W +I M   QN
Sbjct: 441 TQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQN 500

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G  + +L +   +  +G+ PD I   A+L++CNY G + KG+  ++ M +++G+ P  EH
Sbjct: 501 GHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEH 560

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
             C++D+L +AG+L  A  + +TM F+   + W  +L A   + D       AE++  L+
Sbjct: 561 CGCMVDILGRAGKLEAAEQLINTMKFESSLA-WMMLLTACKAHNDTARAARAAEKIFQLE 619

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE--L 603
             +  PY LL+  +   G WEA    ++ M   G+ ++ G S I I +R++ F A    L
Sbjct: 620 PKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVL 679

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            HH   +I+  L  L  EM+  G V
Sbjct: 680 PHHLVGEIFAALEKLGREMQGAGYV 704



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 242/461 (52%), Gaps = 33/461 (7%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           +A +S C+ ++  C   ++    K +HG + +                       + +LQ
Sbjct: 7   QAEISACAAILTACSDLRALPEGKRVHGLVMR-----------------------ESLLQ 43

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
             DE P ++ +  NI ++  L+    D AL VFD + + +VV+W S+IS +   G+   A
Sbjct: 44  --DERPDESLLE-NIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDA 100

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVS----SACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           + +F KM L GV P   TF+ +L   S    +   GK++H  ++++G     +V+ N ++
Sbjct: 101 MVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVM-NLVV 159

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           +MYGK G +  A  VF ++++ ++ SW  +I+    +G+    L     M  +G  PD Y
Sbjct: 160 EMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGY 219

Query: 248 TISIVINACTKLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           T + V+ ACT +  L++ K + A ++   G   ++ V +A I+L+ KC  LE++  +F Q
Sbjct: 220 TFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQ 279

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHG 365
           +D  D    + MI+ + + G  + A++L  LM  E +RP   T   VL ++  +   ++G
Sbjct: 280 IDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYG 339

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H+  +++G+  +  + S+L++MY   G ++++  IF    +RD+VSW++++ G +QN
Sbjct: 340 KEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQN 399

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
              A  L +F E+  +G+ P+ +T  + + AC   G + +G
Sbjct: 400 ESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRG 440



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 146/307 (47%), Gaps = 9/307 (2%)

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSN-----SIVLSATIDLFSKCNRLEDSVRLF 304
           + ++ AC+ LR L +GK+V  L ++   L +     S++ +  I ++ +C   + ++ +F
Sbjct: 14  AAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVF 73

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS--SIPIPPV 362
           +++   +      +IS +   G    A+ LF+ ML   + P   T + +L   S     +
Sbjct: 74  DRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNL 133

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           + G + HS  +++G++ + +V + ++EMY K G ++ +  +F  +   ++ SW  I+   
Sbjct: 134 DEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAY 193

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            QNG   E L +   + + G+ PD  T   VL AC   G +++  ++ +A     G+   
Sbjct: 194 AQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRD 253

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
                 +I+L  + G L +A  +   +  +   S W S++ A A  G  K    +   +M
Sbjct: 254 AAVGTALINLYGKCGALEEAFGVFVQIDNKDIVS-WSSMIAAFAQSGQAKSAIQLL-MLM 311

Query: 543 DLQLPSP 549
           DL+   P
Sbjct: 312 DLEGVRP 318


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 298/595 (50%), Gaps = 36/595 (6%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           ++H    K G + H ++ N  LD Y                          C  GLL + 
Sbjct: 156 SLHPFAIKFGLDTHVFVCNTLLDAY--------------------------CKHGLLAA- 188

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
               A +VF E+ + D V++N+M+ G +  G    AL++F+ M+  G+  + FTFS +L+
Sbjct: 189 ----ARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +   H   G Q+H  ++RS  S+ NV + NSL+D Y K   L     +F  M E D +
Sbjct: 245 VAAGMAHLLLGHQVHALVLRS-TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNV 303

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           S+N +I+    +      L  F  M+  G+       + +++    L ++  GKQ+ A  
Sbjct: 304 SYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQL 363

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V +G  S  ++ +A ID++SKC  L+ +   F             +I+ Y + G  E AL
Sbjct: 364 VLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEAL 423

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF  M R  +RP   T S ++ +S  +  +  G Q HS  I+SG+ S+    S L++MY
Sbjct: 424 QLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMY 483

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +D +   F ++ +R+ +SWN ++      G A   + +FE +L  G  PD +T  
Sbjct: 484 AKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFL 543

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +VL AC++ G  D+ M  F  MK +Y + P +EHYAC+ID L + G   +   +   MPF
Sbjct: 544 SVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPF 603

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +    IW SIL +  I+G+ +L    A+++  ++     PY +L+  YA  G+WE    V
Sbjct: 604 KADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACV 663

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           KK+MR  G+ K +G SW+ IK +IY+F + +L      +I   L  L  EM+ +G
Sbjct: 664 KKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQG 718



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 144/511 (28%), Positives = 247/511 (48%), Gaps = 18/511 (3%)

Query: 39  GHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLD 98
             + K GF+  TY  N  L      G       +FD++P KN  S N+ L     S +L 
Sbjct: 32  ARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLP 91

Query: 99  TALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158
            A  +F   P  +  +W  M+  +A+ G +  AL +F  M  +GV P   T + +L+   
Sbjct: 92  AAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL-- 149

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
             C    +H   I+ GL  ++V + N+L+D Y K G+L  A  VFL M + D +++N+++
Sbjct: 150 PGCTVPSLHPFAIKFGLD-THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMM 208

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
            GC   G    AL  F +MR +G     +T S ++     + +L  G QV AL ++   +
Sbjct: 209 MGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSV 268

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            N  V ++ +D +SKC+ L+D  RLF+++   D    NV+I+ Y         L LF+ M
Sbjct: 269 LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM 328

Query: 339 LR----EDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
            +      + P    LS   S   +P V  G Q H+  +  G  S  ++ ++L++MY+K 
Sbjct: 329 QKLGFDRQVLPYATMLSVAGS---LPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC 385

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +D++   F    ++  +SW  ++ G  QNG+  E L +F ++   GL PDR T ++++
Sbjct: 386 GMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445

Query: 455 LACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            A +    +  G  + S +     +  V  G    + ++D+  + G L +A+     MP 
Sbjct: 446 KASSSLAMIGLGRQLHSYLIRSGYKSSVFSG----SVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMM 542
           +   S W +++ A A YG+ K    + E M+
Sbjct: 502 RNSIS-WNAVISAYAHYGEAKNAIKMFEGML 531



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 100/234 (42%), Gaps = 40/234 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I    S       + +H +L + G+ +  + G+  +D+Y++ G  D+ L+ FDE+P+
Sbjct: 442 SSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 501

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +N ISWN  +           A+K+F+ +      PD V++ S+++  +  G +D  ++ 
Sbjct: 502 RNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 561

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F  M+ Q        +SI       AC                        +ID  G++G
Sbjct: 562 FHLMKHQ--------YSISPWKEHYAC------------------------VIDTLGRVG 589

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGEL---ALDQFYSMRYSGYSP 244
                  + + M  + D I W S++  C   G  EL   A D+ + M  +  +P
Sbjct: 590 CFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATP 643


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 175/599 (29%), Positives = 306/599 (51%), Gaps = 37/599 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + LI      K  +  K +H  L + G   +T+L N  L+LYS+ G              
Sbjct: 79  AHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCG-------------- 124

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             LD  +K+FD++ + ++VSW S+I+G+A       AL  F +M
Sbjct: 125 -----------------ELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQM 167

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +++G   + F  S +L   +S      G Q+H  +++ G     + +G++L DMY K G 
Sbjct: 168 RIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCE-LFVGSNLTDMYSKCGE 226

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  M   D + W S+I G   +G  + AL  +  M       D++ +   ++A
Sbjct: 227 LSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSA 286

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAV 314
           C+ L+    GK + A  +K+GF   + + +A  D++SK   +  +  +F+   D      
Sbjct: 287 CSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVS 346

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
           +  +I  Y      E AL  F  + R  I P EFT + ++ +      +EHGSQ H   +
Sbjct: 347 LTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVV 406

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K  F  +  V+S+L++MY K G  D S ++F +++  D ++WNT++   +Q+G     ++
Sbjct: 407 KFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIE 466

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            F  ++  GL P+ +T   +L  C++ G V+ G+  FS+M++ YGV+P EEHY+C+IDLL
Sbjct: 467 TFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLL 526

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG+L +A D  + MPF+P    W S L A  I+GD++  +  A+++M L+  +   + 
Sbjct: 527 GRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHV 586

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           LL+  YA   +WE +  ++K+++   +NK+ G SW+ I+N+ + F   +  H   ++IY
Sbjct: 587 LLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIY 645


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 174/577 (30%), Positives = 291/577 (50%), Gaps = 49/577 (8%)

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSI 152
           S +L  A  +FD+IP+PD+ +W  +IS     G S  A++ ++  + +  V P      +
Sbjct: 24  SGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD----KL 79

Query: 153 LLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           LL +V+ AC       + K++H   IR G   S+V+LGN+LIDMYGK      A  VF  
Sbjct: 80  LLLSVAKACASLRDVMNAKRVHEDAIRFGFC-SDVLLGNALIDMYGKCRCSEGARLVFEG 138

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D+ISW S+ S   N G    AL  F  M  +G  P+  T+S ++ ACT L++L  G
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSG 198

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY--- 322
           ++V    V+ G   N  V SA +++++ C  +  +  +F+ + R D    NV+I+ Y   
Sbjct: 199 REVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLN 258

Query: 323 ----------GRY----------------------GFGEVALELFQLMLREDIRPTEFTL 350
                     GR                       G  E ALE+   M     +P + T+
Sbjct: 259 KECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITI 318

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           + VL +   +  +  G Q H    +  F  +    ++L+ MYAK G ++ S  +F  + K
Sbjct: 319 TSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTK 378

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           RD VSWNT+++  + +G   E L +F E+++ G+ P+ +T   VL  C++   VD+G+L+
Sbjct: 379 RDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLI 438

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           F +M  ++ V P  +H++C++D+L +AG+L +A +    MP +P    W ++L    +Y 
Sbjct: 439 FDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYK 498

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           +V+L    A R+ +++  +P  Y LL+        W      +K+MR  G+ K  GCSWI
Sbjct: 499 NVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWI 558

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            ++NR++TF  G+  +    +IY  L  +  +M   G
Sbjct: 559 QVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAG 595



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 211/478 (44%), Gaps = 81/478 (16%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S +    AK +H    + GF +   LGN  +D+Y +   S+    +F+ +P +     
Sbjct: 88  CASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFR----- 142

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                     DV+SW SM S Y +CG    AL  F KM L G R
Sbjct: 143 --------------------------DVISWTSMASCYVNCGLLREALGAFRKMGLNGER 176

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T S +L   + +     G+++HG ++R+G+   NV + ++L++MY     +  A  
Sbjct: 177 PNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMG-GNVFVSSALVNMYASCLSIRQAQL 235

Query: 202 VFLNMEELDIISWNSLIS-----------------------------------GCFNSGY 226
           VF +M   D +SWN LI+                                   GC  +G 
Sbjct: 236 VFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGR 295

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E AL+    M+ SG+ P++ TI+ V+ ACT L +L  GKQ+     +  F  +    +A
Sbjct: 296 TEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTA 355

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            + +++KC  LE S R+F  + + D    N MI     +G GE AL LF+ M+   +RP 
Sbjct: 356 LVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPN 415

Query: 347 EFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             T + VLS       V+ G   F SM+     + +A   S ++++ ++ G ++ + E  
Sbjct: 416 SVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFI 475

Query: 405 VKLDKRDLV-SWNTIMMGL-----TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            K+       +W  ++ G       + GR A    +FE  +E   P + + L+ +L++
Sbjct: 476 KKMPIEPTAGAWGALLGGCRVYKNVELGRIAAN-RLFE--IESDNPGNYVLLSNILVS 530



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 146/297 (49%), Gaps = 9/297 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K     + +HG + + G   + ++ +  +++Y+   +      +FD + +
Sbjct: 183 SSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSR 242

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV----VSWNSMISGYASCGYSDYALEM 134
           ++ +SWN+ +     +   +  L VF  +    V     SWN++I G    G ++ ALE+
Sbjct: 243 RDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEV 302

Query: 135 FSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            S+MQ  G +P+  T + +L   + + S   GKQIHG + R      ++    +L+ MY 
Sbjct: 303 LSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWF-FQDLTTTTALVFMYA 361

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  +  VF  M + D +SWN++I      G GE AL  F  M  SG  P+  T + 
Sbjct: 362 KCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTG 421

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           V++ C+  R +D+G  +F ++S       ++   S  +D+ S+  RLE++    +++
Sbjct: 422 VLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKM 478


>gi|357508205|ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/510 (32%), Positives = 282/510 (55%), Gaps = 15/510 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-V 143
           N  L   +K  +L +AL++FDE+PE +VVSW+S+++G    G +  AL +FS M  +G V
Sbjct: 44  NHLLNMYIKCKDLTSALQLFDEMPERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFV 103

Query: 144 RPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +P+ FTF   L   S   +     QI+  ++RSGL   NV L N+ +    + G L  A 
Sbjct: 104 KPNEFTFVSALQACSLSENVTQAYQIYSLVVRSGLE-CNVFLLNAFLTALVRNGKLTEAL 162

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQ----FYSMRYSGYSPDEYTISIVINAC 256
            +F      D ++WN+++ G     Y E + +Q    +  M   G  PDE+T +  +   
Sbjct: 163 QIFETSPIRDTVTWNTMMGG-----YLEFSSEQIPVFWRYMNREGVKPDEFTFASALTGL 217

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             + +L  G QV A  V+ G+  +  V ++ +D++ K  +LE+  + F+++   D     
Sbjct: 218 ATISSLKMGMQVHAQLVRSGYGDDICVGNSLVDMYLKNQKLEEGFKAFDEIPHKDVCSWT 277

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            M     ++G   +AL +   M +  ++P +FTL+  L++   +  +E G QFH + IK 
Sbjct: 278 QMADGCLQWGEPRMALAVIAKMKKMGVKPNKFTLATALNACACLASMEEGKQFHGLRIKL 337

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G D +  V ++L++MYAK G +DS+  +F   + R +VSW T++M   QNG+  E L +F
Sbjct: 338 GSDVDVCVDNALLDMYAKCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIF 397

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           +E+ E  + P+ IT   VL AC+ GGFVD+G    S+M ++YG++PGE+HY C++ +L +
Sbjct: 398 DEMKETSVEPNYITFICVLYACSQGGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGR 457

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG + +A ++   MPF PG  +W+++L A  I+GDV+  +  AE  +      P  Y LL
Sbjct: 458 AGLIKEAKELILRMPFHPGVRVWQTLLSACQIHGDVETGKLAAEHAIKHDKNDPSSYVLL 517

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTG 585
           +   A    W+ +V ++++M    + KV G
Sbjct: 518 SNMLAETSNWDCVVSLRELMETRNVKKVPG 547



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 36/324 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A  I+  + + G   + +L N  L    R G   + LQ+F+  P ++ ++WN  + G L+
Sbjct: 126 AYQIYSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGYLE 185

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
             +        ++IP    V W                      M  +GV+P  FTF+  
Sbjct: 186 FSS--------EQIP----VFWRY--------------------MNREGVKPDEFTFASA 213

Query: 154 LS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L+   T+SS   G Q+H  ++RSG    ++ +GNSL+DMY K   L   F  F  +   D
Sbjct: 214 LTGLATISSLKMGMQVHAQLVRSGYG-DDICVGNSLVDMYLKNQKLEEGFKAFDEIPHKD 272

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           + SW  +  GC   G   +AL     M+  G  P+++T++  +NAC  L ++++GKQ   
Sbjct: 273 VCSWTQMADGCLQWGEPRMALAVIAKMKKMGVKPNKFTLATALNACACLASMEEGKQFHG 332

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L +K+G   +  V +A +D+++KC  ++ +  +F   +         MI    + G    
Sbjct: 333 LRIKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGE 392

Query: 331 ALELFQLMLREDIRPTEFTLSCVL 354
           AL++F  M    + P   T  CVL
Sbjct: 393 ALQIFDEMKETSVEPNYITFICVL 416



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 36/265 (13%)

Query: 4   YLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           Y+ +  V     ++ S L     +  S      +H  L + G+     +GN  +D+Y + 
Sbjct: 197 YMNREGVKPDEFTFASALTGLA-TISSLKMGMQVHAQLVRSGYGDDICVGNSLVDMYLKN 255

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
              ++  + FDEIP K                               DV SW  M  G  
Sbjct: 256 QKLEEGFKAFDEIPHK-------------------------------DVCSWTQMADGCL 284

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNV 180
             G    AL + +KM+  GV+P+ FT +  L+    ++S   GKQ HG  I+ G S  +V
Sbjct: 285 QWGEPRMALAVIAKMKKMGVKPNKFTLATALNACACLASMEEGKQFHGLRIKLG-SDVDV 343

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            + N+L+DMY K G +  A+ VF +     ++SW ++I  C  +G    AL  F  M+ +
Sbjct: 344 CVDNALLDMYAKCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKET 403

Query: 241 GYSPDEYTISIVINACTKLRNLDKG 265
              P+  T   V+ AC++   +D+G
Sbjct: 404 SVEPNYITFICVLYACSQGGFVDEG 428



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           N  KG  + A  +K        + +  ++++ KC  L  +++LF+++   +    + +++
Sbjct: 20  NFLKGTAIHAYFIKGHIPFTLFLQNHLLNMYIKCKDLTSALQLFDEMPERNVVSWSSVMT 79

Query: 321 TYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFD 378
                G    AL LF  M RE  ++P EFT    L +  +   V    Q +S+ ++SG +
Sbjct: 80  GCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSLSENVTQAYQIYSLVVRSGLE 139

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            N  + ++ +    + G +  + +IF     RD V+WNT+M G  +   ++E + VF   
Sbjct: 140 CNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGYLE--FSSEQIPVFWRY 197

Query: 439 L-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYG--VMPGEEHYACIIDLLC 494
           +  EG+ PD  T A+ L        +  GM V + + +  YG  +  G      ++D+  
Sbjct: 198 MNREGVKPDEFTFASALTGLATISSLKMGMQVHAQLVRSGYGDDICVGNS----LVDMYL 253

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +  +L +       +P +  CS W  +      +G+ ++   V  +M  + +  P  ++L
Sbjct: 254 KNQKLEEGFKAFDEIPHKDVCS-WTQMADGCLQWGEPRMALAVIAKMKKMGV-KPNKFTL 311

Query: 555 LT 556
            T
Sbjct: 312 AT 313



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +KK  V     +  + L + C    S +  K  HG   KLG +    + N  LD+Y++ G
Sbjct: 299 MKKMGVKPNKFTLATAL-NACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCG 357

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMIS 120
             D    +F     ++ +SW   +    ++     AL++FDE+     EP+ +++  ++ 
Sbjct: 358 CMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFICVLY 417

Query: 121 GYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSA 160
             +  G+ D   +  S M    G+ P    +  ++S +  A
Sbjct: 418 ACSQGGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRA 458


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 180/613 (29%), Positives = 312/613 (50%), Gaps = 38/613 (6%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C         + +H H  K    +   + N  + +YS+ G  DD   LF+ I  K  
Sbjct: 159 VRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDK-- 216

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                        D++SW S+I+G+A  G+   AL++F +M ++
Sbjct: 217 -----------------------------DLISWGSIIAGFAQQGFEMEALQVFREMIVE 247

Query: 142 GVR-PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           G   P+ F F         V S  +G+QIHG  I+  L   ++ +G SL DMY +   L 
Sbjct: 248 GSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD-RDLYVGCSLSDMYARCKNLD 306

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  +E  D++SWNS+++     G    AL  F  MR SG  PD  T+  ++ AC 
Sbjct: 307 SARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACV 366

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L  G+ + +  VK+G   +  V ++ + ++++C+ L  ++ +F ++   D    N 
Sbjct: 367 GRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 426

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           +++   ++   E  L+LF L+ + +      +L+ VLS S  +   E   Q H+ A K+G
Sbjct: 427 ILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAG 486

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
              + +++++L++ YAK GS+D +  +F +  + RD+ SW+++++G  Q G A E  D+F
Sbjct: 487 LVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLF 546

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             +   G+ P+ +T   VL AC+  GFV++G   +S M+ EYG++P  EH +CI+DLL +
Sbjct: 547 SRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLAR 606

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L +A +    MPF+P   +W+++L AS ++ D+++ +  AE ++++       Y LL
Sbjct: 607 AGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLL 666

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
              YA  G W    R+KK MR +G+ K  G SW+ +K  +  F   +  H   ++IY +L
Sbjct: 667 CNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 726

Query: 616 RLLTWEMEDEGCV 628
            L+  EM   G V
Sbjct: 727 ELIGMEMIKAGYV 739



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/542 (25%), Positives = 239/542 (44%), Gaps = 53/542 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFK-------LGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           + L+  C   +S    + +H HL              +T LGN  + +Y R    D    
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPD---- 103

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                      +A +VFDE+P  + VSW S+I+ +   G +  A
Sbjct: 104 ---------------------------SARQVFDEMPARNPVSWASVIAAHVQNGRAGDA 136

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGN 184
           L +FS M   G     F     L +   AC        G+Q+H   ++S    S++++ N
Sbjct: 137 LGLFSSMLRSGTAADQFA----LGSAVRACTELGDVGTGRQVHAHALKSERG-SDLIVQN 191

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YS 243
           +L+ MY K G++   F +F  +++ D+ISW S+I+G    G+   AL  F  M   G + 
Sbjct: 192 ALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHH 251

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+E+       AC  + + + G+Q+  LS+K     +  V  +  D++++C  L+ +   
Sbjct: 252 PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVA 311

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPV 362
           F +++  D    N +++ Y   G    AL LF  M    +RP   T+  +L + +    +
Sbjct: 312 FYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL 371

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            HG   HS  +K G D +  V +SL+ MYA+   + S+ ++F ++  +D+V+WN+I+   
Sbjct: 372 YHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTAC 431

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            Q+    E L +F  L +     DRI+L  VL A    G+ +    V  A   + G++  
Sbjct: 432 AQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH-AYAFKAGLVDD 490

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
                 +ID   + G L  A+ +   M        W S++   A +G  K   ++  RM 
Sbjct: 491 RMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMR 550

Query: 543 DL 544
            L
Sbjct: 551 SL 552



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 39/293 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+   +    + IH +L KLG +    + N  L +Y+R       + +F EI  ++
Sbjct: 361 LLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD 420

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++WN  L    + ++ +  LK+F  +    P  D +S N+++S  A  GY     EM  
Sbjct: 421 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGY----FEMV- 475

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                      KQ+H    ++GL + + +L N+LID Y K G L
Sbjct: 476 ---------------------------KQVHAYAFKAGL-VDDRMLSNTLIDTYAKCGSL 507

Query: 197 YYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  +F  M    D+ SW+SLI G    GY + A D F  MR  G  P+  T   V+ A
Sbjct: 508 DDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTA 567

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+++  +++G   ++ +  + G +      S  +DL ++  +L ++    +Q+
Sbjct: 568 CSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQM 620


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 199/707 (28%), Positives = 341/707 (48%), Gaps = 91/707 (12%)

Query: 13  ASLSY-CSQLIDR----------CLSFKSFDFAKTIHGHLFK---LGFNAHTYLGNRCLD 58
           ASL++ CS L+ R          C S       + +H  L     L   +H +L  R + 
Sbjct: 12  ASLAHQCSLLLRRLAERHSPAPTCPSSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIH 71

Query: 59  LYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP--DVVSWN 116
           LY+          LF   P    ++    +     +  L  A   FD +P    D V  N
Sbjct: 72  LYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHN 131

Query: 117 SMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVS-----SACHGKQIHGSM 170
           +M+S +A    +  A+ +F  +   G +RP  ++F+ L+S V      +A H  Q+H S+
Sbjct: 132 AMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSV 191

Query: 171 IRSG----LSLSNVVLG-----------------------------NSLIDMYGKLGVLY 197
           ++SG    LS+SN ++                               +++  Y + G + 
Sbjct: 192 LKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVN 251

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  ++    + WN++ISG   SG    A + F  M       DE+T + V++AC 
Sbjct: 252 AARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACA 311

Query: 258 KLRNLDKGKQVFA--LSVKVGFLSNSI--VLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
                  GK V    + ++  F+  +   V +A + L+SK  ++  + R+F+ ++  D  
Sbjct: 312 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVV 371

Query: 314 VIN-------------------------------VMISTYGRYGFGEVALELFQLMLRED 342
             N                               VM+S Y   G  E AL+LF  M  ED
Sbjct: 372 SWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED 431

Query: 343 IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++P ++T +  +++   +  ++HG Q H+  ++ GF+++    ++L+ MYAK G+++ + 
Sbjct: 432 VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDAR 491

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F+ +   D VSWN ++  L Q+G   E L++F++++ EG+ PDRI+   +L ACN+ G
Sbjct: 492 LVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAG 551

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VD+G   F +MK ++G+ PGE+HYA +IDLL ++G++G+A D+  TMPF+P  SIWE+I
Sbjct: 552 LVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 611

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L      GD++     A+++  +       Y LL+  Y+  GRW    RV+K+MR  G+ 
Sbjct: 612 LSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVK 671

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           K  GCSWI + ++I+ F  G+ +H   Q++Y  L ++   M   G V
Sbjct: 672 KEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYV 718


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 170/553 (30%), Positives = 304/553 (54%), Gaps = 15/553 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++ +A  +FD++P  D +SWN+MISGY         LE+F +M+   + P   T  
Sbjct: 181 VKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMT-- 238

Query: 152 ILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             +++V SAC        G Q+H  ++R+     N+ + NSLI MY  +G    A  VF 
Sbjct: 239 --MTSVISACELLGDERLGTQLHSYVVRTAYD-GNISVYNSLIQMYLSVGHWKEAESVFS 295

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  D++SW ++ISGC ++   + AL+ + +M  +G  PDE TI+ V++AC  L  LD 
Sbjct: 296 GMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDM 355

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G ++  L+ + G +   +V ++ ID++SKC R+E ++ +F Q+   D      +I+    
Sbjct: 356 GMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRI 415

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                 AL  F+ M+ +  +P   TL   LS+   +  +  G + H+ A+K+G   +  +
Sbjct: 416 NNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFL 474

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++++++Y + G + ++   F  L+++D+ +WN ++ G  Q G+ A  +++F+ ++E  +
Sbjct: 475 PNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEI 533

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +T  ++L AC+  G V +G+  F  MK  Y + P  +HYAC++DLL +AG+L +A 
Sbjct: 534 NPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAH 593

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           +    MP +P  +IW ++L A  I+  V L E  A+ +      S   Y LL   YA  G
Sbjct: 594 EFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSG 653

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +W+ + +V++ M++ G+    GCSW+ +K +++ F +G+  H   Q+I +VL     +M+
Sbjct: 654 KWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMK 713

Query: 624 DEGCVYLECDKLD 636
             G    EC  +D
Sbjct: 714 TSGFNGQECSSMD 726



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 235/470 (50%), Gaps = 17/470 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L   ++  ++  A  VF  + E D+ SWN ++ GY   G+ D AL ++ ++   G+R
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 145 PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TF  +L + + A     G+++H  ++R    + +V + N+LI MY K G +  A  
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM-DVDVVNALITMYVKCGDVVSARM 191

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M   D ISWN++ISG F +      L+ F+ MR     PD  T++ VI+AC  L +
Sbjct: 192 LFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGD 251

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G Q+ +  V+  +  N  V ++ I ++      +++  +F  ++  D      +IS 
Sbjct: 252 ERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISG 311

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
                  + ALE ++ M      P E T++ VLS+   +  ++ G + H +A ++G    
Sbjct: 312 CVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILY 371

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            VVA+SL++MY+K   I+ + EIF ++  +D++SW +++ GL  N R  E L  F +++ 
Sbjct: 372 VVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMIL 431

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEY---GVMPGEEHYACIIDLLCQA 496
           +   P+ +TL + L AC   G +  G  + + A+K      G +P       I+DL  + 
Sbjct: 432 KS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPN-----AILDLYVRC 485

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           G++  A++  +      G   W  +L   A  G   +   + +RM++ ++
Sbjct: 486 GRMRTALNQFNLNEKDVGA--WNILLTGYAQKGKGAMVMELFKRMVESEI 533



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 192/366 (52%), Gaps = 3/366 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +  +++ S ++L +V LGN+L+ M+ + G +  A+ VF  M E D+ SWN L+ G  
Sbjct: 52  GEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYT 111

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G+ + AL  ++ + ++G  PD YT   V+ +C    +L +G++V A  V+  F  +  
Sbjct: 112 KAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVD 171

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V++A I ++ KC  +  +  LF+++   D    N MIS Y         LELF  M    
Sbjct: 172 VVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELS 231

Query: 343 IRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I P   T++ V+S+  +   E  G+Q HS  +++ +D N  V +SL++MY   G    + 
Sbjct: 232 IDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAE 291

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  ++ RD+VSW TI+ G   N    + L+ ++ +   G  PD +T+A+VL AC   G
Sbjct: 292 SVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D GM +   + E  G +        +ID+  +  ++ KA++I   +P +   S W S+
Sbjct: 352 QLDMGMKLHE-LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVIS-WTSV 409

Query: 522 LRASAI 527
           +    I
Sbjct: 410 INGLRI 415



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 38/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S    D    +H    + G   +  + N  +D+YS+    +  L++F +IP 
Sbjct: 341 ASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPD 400

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI---PEPDVVSWNSMISGYASCGYSDYALEMF 135
           K+ ISW   + GL  ++    AL  F ++    +P+ V   ++IS  ++C          
Sbjct: 401 KDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNSV---TLISALSAC---------- 447

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                              + V +   GK+IH   +++G+      L N+++D+Y + G 
Sbjct: 448 -------------------ARVGALMCGKEIHAHALKAGMGFDG-FLPNAILDLYVRCGR 487

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F N+ E D+ +WN L++G    G G + ++ F  M  S  +PD+ T   ++ A
Sbjct: 488 MRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCA 546

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C++   + +G + F  + V      N    +  +DL  +  +L ++    E++
Sbjct: 547 CSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERM 599


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 171/537 (31%), Positives = 290/537 (54%), Gaps = 17/537 (3%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LFD++P++N +SWN  + G +K+  +  A K FD +PE +VVSW +M+ GY   G    A
Sbjct: 69  LFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEA 128

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
             +F +M  + V     +++++L  +       +  G  +   + + +VV   ++I  Y 
Sbjct: 129 ETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARG--LFDIMPVKDVVARTNMISGYC 182

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           + G L  A  +F  M   ++ISW ++ISG   +G  ++A   F  M       +E + + 
Sbjct: 183 QEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTA 238

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           ++   T+   +++  ++F A+ VK     N+++L      F +   +  + ++F+Q+   
Sbjct: 239 MLMGYTQGGRIEEASELFDAMPVKAVVACNAMILG-----FGQNGEVAKARQVFDQIREK 293

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFH 369
           D    + MI  Y R GF   AL LF LM RE ++    +L  VLS    +  ++HG Q H
Sbjct: 294 DDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVH 353

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +  +KS FDS+  VAS L+ MY K G +  + +IF +   +D+V WN+I+ G  Q+G   
Sbjct: 354 AELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVE 413

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L VF E+   G+  D +T   VL AC+Y G V +G+ +F +MK +Y V P  EHYAC+
Sbjct: 414 EALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACM 473

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG +  A+D+   MP +    IW ++L A   + ++ L E  A++++ L+  + 
Sbjct: 474 VDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNA 533

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            PY LL+  YA +GRW  +  +++ MR   ++K  GCSWI ++ R++ F  G    H
Sbjct: 534 GPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKH 590



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 170/363 (46%), Gaps = 40/363 (11%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y + G   +  +LFDE+P++N ISW   + G +++  +D A K+F+ +PE + VSW +M+
Sbjct: 181 YCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAML 240

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
            GY   G  + A E+F  M ++ V                AC                  
Sbjct: 241 MGYTQGGRIEEASELFDAMPVKAV---------------VAC------------------ 267

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
               N++I  +G+ G +  A  VF  + E D  +W+++I      G+   AL+ F  M+ 
Sbjct: 268 ----NAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQR 323

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            G   +  ++  V++ C  L +LD G+QV A  VK  F S+  V S  I ++ KC  L  
Sbjct: 324 EGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVK 383

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           + ++F++    D  + N +I+ Y ++G  E AL++F  M    +     T   VLS+   
Sbjct: 384 ARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSY 443

Query: 360 P-PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWN 416
              V+ G + F SM  K   +      + ++++  + G ++ + ++  K+  + D + W 
Sbjct: 444 TGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWG 503

Query: 417 TIM 419
            ++
Sbjct: 504 ALL 506



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 40/228 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  S D  + +H  L K  F++  ++ +  + +Y + G      Q+FD    K+ + W
Sbjct: 340 CASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMW 399

Query: 85  NICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + G  +   ++ AL+VF E+       D V++  ++S  +  G     LE+F  M+ 
Sbjct: 400 NSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKS 459

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +        + +   T   AC                        ++D+ G+ G++  A 
Sbjct: 460 K--------YLVEPKTEHYAC------------------------MVDLLGRAGLVNDAM 487

Query: 201 GVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSMRYSGYSP 244
            +   M  E D I W +L+  C    N    E+A  +   +      P
Sbjct: 488 DLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGP 535



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S A+  +S +  YA+ G I+S+  +F ++  + +VSWN+++ G  QN R  E   +F+++
Sbjct: 14  SVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM 73

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE--HYACIIDLLCQA 496
                 P+R T++   L     G+V   M+  S  ++ +  MP      +  ++    Q 
Sbjct: 74  ------PERNTVSWNGL---ISGYVKNRMV--SEARKAFDTMPERNVVSWTAMVRGYVQE 122

Query: 497 GQLGKAIDITSTMP 510
           G + +A  +   MP
Sbjct: 123 GLVSEAETLFWQMP 136


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 180/613 (29%), Positives = 312/613 (50%), Gaps = 38/613 (6%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C         + +H H  K    +   + N  + +YS+ G  DD   LF+ I  K  
Sbjct: 142 VRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDK-- 199

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                        D++SW S+I+G+A  G+   AL++F +M ++
Sbjct: 200 -----------------------------DLISWGSIIAGFAQQGFEMEALQVFREMIVE 230

Query: 142 GVR-PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           G   P+ F F         V S  +G+QIHG  I+  L   ++ +G SL DMY +   L 
Sbjct: 231 GSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLD-RDLYVGCSLSDMYARCKNLD 289

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  +E  D++SWNS+++     G    AL  F  MR SG  PD  T+  ++ AC 
Sbjct: 290 SARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACV 349

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L  G+ + +  VK+G   +  V ++ + ++++C+ L  ++ +F ++   D    N 
Sbjct: 350 GRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 409

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           +++   ++   E  L+LF L+ + +      +L+ VLS S  +   E   Q H+ A K+G
Sbjct: 410 ILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAG 469

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
              + +++++L++ YAK GS+D +  +F +  + RD+ SW+++++G  Q G A E  D+F
Sbjct: 470 LVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLF 529

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             +   G+ P+ +T   VL AC+  GFV++G   +S M+ EYG++P  EH +CI+DLL +
Sbjct: 530 SRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLAR 589

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L +A +    MPF+P   +W+++L AS ++ D+++ +  AE ++++       Y LL
Sbjct: 590 AGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLL 649

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
              YA  G W    R+KK MR +G+ K  G SW+ +K  +  F   +  H   ++IY +L
Sbjct: 650 CNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 709

Query: 616 RLLTWEMEDEGCV 628
            L+  EM   G V
Sbjct: 710 ELIGMEMIKAGYV 722



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 208/441 (47%), Gaps = 15/441 (3%)

Query: 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQ 165
           VSW S+I+ +   G +  AL +FS M   G     F     L +   AC        G+Q
Sbjct: 101 VSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFA----LGSAVRACTELGDVGTGRQ 156

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +H   ++S    S++++ N+L+ MY K G++   F +F  +++ D+ISW S+I+G    G
Sbjct: 157 VHAHALKSERG-SDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQG 215

Query: 226 YGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           +   AL  F  M   G + P+E+       AC  + + + G+Q+  LS+K     +  V 
Sbjct: 216 FEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVG 275

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
            +  D++++C  L+ +   F +++  D    N +++ Y   G    AL LF  M    +R
Sbjct: 276 CSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLR 335

Query: 345 PTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T+  +L + +    + HG   HS  +K G D +  V +SL+ MYA+   + S+ ++
Sbjct: 336 PDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDV 395

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++  +D+V+WN+I+    Q+    E L +F  L +     DRI+L  VL A    G+ 
Sbjct: 396 FHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYF 455

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
           +    V  A   + G++        +ID   + G L  A+ +   M        W S++ 
Sbjct: 456 EMVKQVH-AYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIV 514

Query: 524 ASAIYGDVKLTENVAERMMDL 544
             A +G  K   ++  RM  L
Sbjct: 515 GYAQFGYAKEAFDLFSRMRSL 535



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 187/380 (49%), Gaps = 27/380 (7%)

Query: 155 STVSSACHGKQIHGSMIRSGLS------LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           S + S   G+++H  ++ S  S        N VLGN LI MYG+                
Sbjct: 55  SRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGR---------------- 98

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            + +SW S+I+    +G    AL  F SM  SG + D++ +   + ACT+L ++  G+QV
Sbjct: 99  -NPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQV 157

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A ++K    S+ IV +A + ++SK   ++D   LFE++   D      +I+ + + GF 
Sbjct: 158 HAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFE 217

Query: 329 EVALELFQLMLRE-DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
             AL++F+ M+ E    P EF       +   +   E+G Q H ++IK   D +  V  S
Sbjct: 218 MEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCS 277

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L +MYA+  ++DS+   F +++  DLVSWN+I+   +  G  +E L +F E+ + GL PD
Sbjct: 278 LSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPD 337

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT+  +L AC     +  G L+ S +  + G+         ++ +  +   L  A+D+ 
Sbjct: 338 GITVRGLLCACVGRDALYHGRLIHSYLV-KLGLDGDVSVCNSLLSMYARCSDLSSAMDVF 396

Query: 507 STMPFQPGCSIWESILRASA 526
             +  Q   + W SIL A A
Sbjct: 397 HEIKDQDVVT-WNSILTACA 415



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 132/293 (45%), Gaps = 39/293 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+   +    + IH +L KLG +    + N  L +Y+R       + +F EI  ++
Sbjct: 344 LLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD 403

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++WN  L    + ++ +  LK+F  +    P  D +S N+++S  A  GY     EM  
Sbjct: 404 VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGY----FEMV- 458

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                      KQ+H    ++GL + + +L N+LID Y K G L
Sbjct: 459 ---------------------------KQVHAYAFKAGL-VDDRMLSNTLIDTYAKCGSL 490

Query: 197 YYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  +F  M    D+ SW+SLI G    GY + A D F  MR  G  P+  T   V+ A
Sbjct: 491 DDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTA 550

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+++  +++G   ++ +  + G +      S  +DL ++  +L ++    +Q+
Sbjct: 551 CSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQM 603


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/591 (31%), Positives = 304/591 (51%), Gaps = 43/591 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L  + +NK  L   + L+  C+   SF   +  H H+ K G     ++GN  L LY + G
Sbjct: 52  LYDSRINKPLLY--ASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLG 109

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                        SD+L T  +VFD +   DVVSW SMI+GY  
Sbjct: 110 -----------------------------SDSLLTR-RVFDGLFVKDVVSWASMITGYVR 139

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVV 181
            G S  A+E+F  M   G+ P+GFT S ++   S + +   GK  HG ++R G   SN V
Sbjct: 140 EGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFD-SNPV 198

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY-SMRYS 240
           + +SLIDMYG+  V   A  +F  + E D + W ++IS    +   E AL  FY   R  
Sbjct: 199 ILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAH 258

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PD YT   V+ AC  L  L +G+++ A  +  GF  N +  S+ +D++ KC  +E S
Sbjct: 259 RLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKS 318

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
            RLF+++   +    + +++ Y   G  E A+ LF+ M   D+    ++   V+ +   +
Sbjct: 319 QRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDL----YSFGTVIRACAGL 374

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             V  G + H   I+ G   + +V S+L+++YAK G I+ +  +F ++  R+L++WN+++
Sbjct: 375 AAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMI 434

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            G  QNG +   + +FE +++EG+ PD I+   +L AC++ G VD+    F  M  +YG+
Sbjct: 435 HGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGI 494

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA-SAIYGDVKLTENVA 538
            PG EHY C++DLL +AG L +A ++      +   S+W  +L A +    +    E +A
Sbjct: 495 KPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERIA 554

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           +++M+L+    L Y  L   Y   GRW+  V+V+++M+   + K+ G SW+
Sbjct: 555 KKLMELEPQCYLSYVHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/611 (30%), Positives = 306/611 (50%), Gaps = 36/611 (5%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C +    +  + IHG+ ++      T + N  +DLY +                   
Sbjct: 228 VSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCK------------------- 268

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                C R       L  A K+FD +   ++VSW +MISGY    ++  A+ MF  M   
Sbjct: 269 -----CSR-------LSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQA 316

Query: 142 GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G +P GF  + +L++  S      G+QIH  +I++ L     V  N+LIDMY K   L  
Sbjct: 317 GWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYV-KNALIDMYAKCEHLTE 375

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  + E D IS+N++I G   +     A++ F  MR+    P   T   ++   + 
Sbjct: 376 ARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSS 435

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
              ++  KQ+  L +K G   +    SA ID++SKC+ + D+  +F  L   D  + N M
Sbjct: 436 QLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSM 495

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGF 377
           I  + +   GE A++LF  +L   + P EFT ++ V  +  +  + HG QFH+  IK+G 
Sbjct: 496 IFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGV 555

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           D++  V+++L++MYAK G I     +F      D++ WN+++    Q+G A E L VF  
Sbjct: 556 DNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRL 615

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           + E  + P+ +T   VL AC + GFV +G+  F++MK  Y + PG EHYA +++L  ++G
Sbjct: 616 MGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSG 675

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           +L  A +    MP +P  ++W S+L A  ++G+ ++    AE  +        PY LL+ 
Sbjct: 676 KLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSN 735

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            YA +G W  +  +++ M  +G  K TGCSWI +   ++TF     +H   + IY VL  
Sbjct: 736 IYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRGREHPEAELIYSVLDE 795

Query: 618 LTWEMEDEGCV 628
           LT  +++ G V
Sbjct: 796 LTSLIKNLGYV 806



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 201/379 (53%), Gaps = 14/379 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ LRG      L  A  +FD +P  ++VSW S+IS Y   G  D A+ +F   Q     
Sbjct: 57  NLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCE 116

Query: 145 -PSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            P+ F    LL++V  AC        G+Q+HG  ++  L  +NV +G +LI++Y KLG +
Sbjct: 117 VPNEF----LLASVLRACTQSKAVSLGEQVHGIAVKLDLD-ANVYVGTALINLYAKLGCM 171

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  +     ++WN++I+G    G G +AL+ F  M   G  PD + ++  ++AC
Sbjct: 172 DEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSAC 231

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           + L  L+ G+Q+   + +    +++ V++  IDL+ KC+RL  + +LF+ ++  +     
Sbjct: 232 SALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWT 291

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKS 375
            MIS Y +  F   A+ +F  M +   +P  F  + +L+S   +  +  G Q H+  IK+
Sbjct: 292 TMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKA 351

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             +++  V ++L++MYAK   +  +  +F  L + D +S+N ++ G ++N   AE +++F
Sbjct: 352 DLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIF 411

Query: 436 EELLEEGLPPDRITLAAVL 454
           + +    L P  +T  ++L
Sbjct: 412 QRMRFFSLRPSLLTFVSLL 430



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 206/436 (47%), Gaps = 43/436 (9%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ +++ C S  +    + IH H+ K    A  Y+ N  +D+Y++     +   +FD + 
Sbjct: 325 CTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALA 384

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           + + IS+N  + G  K+ +L  A+ +F                                +
Sbjct: 385 EDDAISYNAMIEGYSKNRDLAEAVNIFQ-------------------------------R 413

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+   +RPS  TF  LL   SS       KQIHG +I+SG SL ++   ++LID+Y K  
Sbjct: 414 MRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSL-DLYAASALIDVYSKCS 472

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           ++  A  VF  +   D++ WNS+I G   +  GE A+  F  +  SG +P+E+T   ++ 
Sbjct: 473 LVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVT 532

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
             + L ++  G+Q  A  +K G  ++  V +A ID+++KC  +++   LFE     D   
Sbjct: 533 VASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVIC 592

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374
            N MI+TY ++G  E AL++F+LM   ++ P   T   VLS+            H  ++K
Sbjct: 593 WNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMK 652

Query: 375 SGFDSNAVVA--SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTI-----MMGLTQNG 426
           S +D    +   +S++ ++ ++G + ++ E   ++  K     W ++     + G  + G
Sbjct: 653 SNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIG 712

Query: 427 RAAETLDVFEELLEEG 442
           R A  + +  +  + G
Sbjct: 713 RYAAEMALLADPTDSG 728



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 158/294 (53%), Gaps = 3/294 (1%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           IH     +G  L ++ L N L+  Y  LG L  A  +F  M   +++SW S+IS     G
Sbjct: 40  IHARATVAG-RLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHG 98

Query: 226 YGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
             + A+  F +  + S   P+E+ ++ V+ ACT+ + +  G+QV  ++VK+   +N  V 
Sbjct: 99  RDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVG 158

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A I+L++K   +++++ +F  L        N +I+ Y + G G VALELF  M  E +R
Sbjct: 159 TALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVR 218

Query: 345 PTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P  F L+  +S+   +  +E G Q H  A +S  +++  V + L+++Y K   + ++ ++
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKL 278

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           F  ++ R+LVSW T++ G  QN   AE + +F  + + G  PD     ++L +C
Sbjct: 279 FDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSC 332



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 15/262 (5%)

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +LR L+    + A +   G L +  + +  +  +S   RL D+  LF+++   +      
Sbjct: 32  RLRRLNPA--IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGS 89

Query: 318 MISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKS 375
           +IS Y ++G  + A+ LF    +     P EF L+ VL +      V  G Q H +A+K 
Sbjct: 90  VISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKL 149

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             D+N  V ++L+ +YAK G +D +  +F  L  R  V+WNT++ G  Q G     L++F
Sbjct: 150 DLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELF 209

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF-----SAMKEEYGVMPGEEHYACII 490
           + +  EG+ PDR  LA+ + AC+  GF++ G  +      SA + +  V+        +I
Sbjct: 210 DRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVIN------VLI 263

Query: 491 DLLCQAGQLGKAIDITSTMPFQ 512
           DL C+  +L  A  +   M ++
Sbjct: 264 DLYCKCSRLSAARKLFDCMEYR 285


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/614 (30%), Positives = 314/614 (51%), Gaps = 37/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +  +  K IHG++ + GF+    + N  +D Y                  
Sbjct: 259 SSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFY------------------ 300

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                        LK   + T  K+F+ + + DVVSW +MI+G     +   A+++F +M
Sbjct: 301 -------------LKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEM 347

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G +P  F  + +L++  S      G+Q+H   I+  +   + V  N LIDMY K   
Sbjct: 348 VRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFV-KNGLIDMYAKCDS 406

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  +  ++++S+N++I G         ALD F  MR S   P   T   ++  
Sbjct: 407 LTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGL 466

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            + L  L+   Q+  L +K G   +S   SA ID++SKC+ + D+  +FE++   D  V 
Sbjct: 467 SSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVW 526

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N M S Y +    E +L+L++ +    ++P EFT + V+++   I  + HG QFH+  IK
Sbjct: 527 NAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIK 586

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G D +  V +SL++MYAK GSI+ S + F   ++RD+  WN+++    Q+G AA+ L+V
Sbjct: 587 MGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEV 646

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FE ++ EG+ P+ +T   +L AC++ G +D G   F +M  ++G+ PG +HYAC++ LL 
Sbjct: 647 FERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-SKFGIEPGIDHYACMVSLLG 705

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG++ +A +    MP +P   +W S+L A  + G V+L    AE  +         Y L
Sbjct: 706 RAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYIL 765

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  +A +G W ++  V++ M  + + K  G SWI + N ++ F A +  H     I LV
Sbjct: 766 LSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAHRDSTLISLV 825

Query: 615 LRLLTWEMEDEGCV 628
           L  L  +++  G V
Sbjct: 826 LDNLILQIKGFGYV 839



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 251/532 (47%), Gaps = 46/532 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    +   A  +HG + K GF    Y+G   +D Y++ G  D+   +FD +  
Sbjct: 158 ASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKV 217

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K  ++W   + G  K    + +LK+F+++ E DV              Y D         
Sbjct: 218 KTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDV--------------YPD--------- 254

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
                         ++S+V SAC        GKQIHG ++R G  + +V + N +ID Y 
Sbjct: 255 ------------RYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDM-DVSVVNGIIDFYL 301

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +     +F  + + D++SW ++I+GC  + +   A+D F  M   G+ PD +  + 
Sbjct: 302 KCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTS 361

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+N+C  L+ L KG+QV A ++KV   ++  V +  ID+++KC+ L ++ ++F+ +   +
Sbjct: 362 VLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAIN 421

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHS 370
               N MI  Y R      AL+LF+ M      PT  T +S +  S  +  +E  SQ H 
Sbjct: 422 VVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHC 481

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + IK G   ++   S+L+++Y+K   +  +  +F ++  RD+V WN +  G +Q     E
Sbjct: 482 LIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEE 541

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           +L ++++L    L P+  T AAV+ A +    +  G   F     + G+         ++
Sbjct: 542 SLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQ-FHNQVIKMGLDDDPFVTNSLV 600

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           D+  + G + ++    S+   Q   + W S++   A +GD      V ERM+
Sbjct: 601 DMYAKCGSIEESHKAFSSTN-QRDIACWNSMISTYAQHGDAAKALEVFERMI 651



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 219/428 (51%), Gaps = 46/428 (10%)

Query: 33  FAKTIHGHLFKLGFNAH-TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           + K IH H+  LGF+ H  +L N  L  YS+                             
Sbjct: 69  YYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMN--------------------------- 101

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTF 150
           L+SD    A K+FD +P  ++V+W+SM+S Y   GYS  AL +F + M+    +P+ +  
Sbjct: 102 LQSD----AQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEY-- 155

Query: 151 SILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             +L++V  AC          Q+HG +++ G  + +V +G SLID Y K G +  A  +F
Sbjct: 156 --ILASVVRACTQLGNLSQALQLHGFVVKGGF-VQDVYVGTSLIDFYAKRGYVDEARLIF 212

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             ++    ++W ++I+G    G  E++L  F  MR     PD Y IS V++AC+ L  L+
Sbjct: 213 DGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLE 272

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GKQ+    ++ GF  +  V++  ID + KC++++   +LF +L   D      MI+   
Sbjct: 273 GGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCM 332

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAV 382
           +  F   A++LF  M+R+  +P  F  + VL+S   +  ++ G Q H+ AIK   D++  
Sbjct: 333 QNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDF 392

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V + L++MYAK  S+ ++ ++F  +   ++VS+N ++ G ++  +  E LD+F E+    
Sbjct: 393 VKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSL 452

Query: 443 LPPDRITL 450
            PP  +T 
Sbjct: 453 SPPTLLTF 460



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 163/310 (52%), Gaps = 2/310 (0%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K+IH  ++  G    +V L N+L+  Y K+ +   A  +F  M   ++++W+S++S    
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 224 SGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            GY   AL  F   MR     P+EY ++ V+ ACT+L NL +  Q+    VK GF+ +  
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ ID ++K   ++++  +F+ L          +I+ Y + G  EV+L+LF  M   D
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD 250

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           + P  + +S VLS+  +   +E G Q H   ++ GFD +  V + +++ Y K   + +  
Sbjct: 251 VYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGR 310

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           ++F +L  +D+VSW T++ G  QN    + +D+F E++ +G  PD     +VL +C    
Sbjct: 311 KLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQ 370

Query: 462 FVDKGMLVFS 471
            + KG  V +
Sbjct: 371 ALQKGRQVHA 380


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/612 (29%), Positives = 305/612 (49%), Gaps = 39/612 (6%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C         + +H    K     H  + N  + +YS+ G+  D   LF+ I  K  
Sbjct: 153 VRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDK-- 210

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                        D+ SW S+I+G A  G    AL +F +M  +
Sbjct: 211 -----------------------------DLFSWGSIIAGLAQQGREMDALHIFREMIAE 241

Query: 142 GVR-PSGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           G+  P+ F F  +       ++S  +G+QIHG  ++  L   N   G SL DMY +   L
Sbjct: 242 GMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLD-RNSYAGCSLGDMYARCNKL 300

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  +E  D++SWNSLI+     G    A+  F  MRYS   PD  T+  ++ AC
Sbjct: 301 DSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCAC 360

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L +G+ + +  VK+G   + +V ++ I ++++C     ++ +F + +  D    N
Sbjct: 361 VGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWN 420

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKS 375
            +++   ++   E   +LF+L+          +L+ VLS S  +   E   Q H+ A K 
Sbjct: 421 SILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKV 480

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           G  S+A+++++L++ YAK GS+D + ++F +    RD+ SW+++++G  Q G A E LD+
Sbjct: 481 GLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDL 540

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +   G+ P+ +T   VL+AC+  G VD+G   +S M+ EYG++P +EH +C+IDLL 
Sbjct: 541 FARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLA 600

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A      MPF+P   +W ++L AS  + DV++ +  AE ++++       Y L
Sbjct: 601 RAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVL 660

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA  G W    R+KK MR +G+ K  G SWI +K  +  F   +  H    ++Y +
Sbjct: 661 LCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEMYTM 720

Query: 615 LRLLTWEMEDEG 626
           L L+ +EM   G
Sbjct: 721 LDLIGFEMVKAG 732



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/536 (25%), Positives = 236/536 (44%), Gaps = 54/536 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNA-----HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           C   +SF   + +H HL      A     +T L N  + +Y R    D            
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPD------------ 97

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                              +A  VFD + + + VSW ++I+ +A       A+ +FS M 
Sbjct: 98  -------------------SARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 138

Query: 140 LQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             G  P  F     L +   AC        G+Q+H   I+S  +  ++++ N+L+ MY K
Sbjct: 139 RLGTAPDEFA----LGSAVRACAELGDLGLGRQVHAQAIKSD-NGGHLIVQNALVTMYSK 193

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISI 251
            G +   F +F  + + D+ SW S+I+G    G    AL  F  M   G + P+E+    
Sbjct: 194 SGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGS 253

Query: 252 VINACTKLRN-LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           V  AC+ + N L+ G+Q+  L VK     NS    +  D++++CN+L+ ++++F +++  
Sbjct: 254 VFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESP 313

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFH 369
           D    N +I+ +   G    A+ LF  M    ++P   T+  +L + +    +  G   H
Sbjct: 314 DLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIH 373

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           S  +K G   + +V +SL+ MY +     S+ ++F + + RD+V+WN+I+    Q+    
Sbjct: 374 SYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHME 433

Query: 430 ETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
           +   +F  LL   +P  DRI+L  VL A    G+ +    V  A   + G++        
Sbjct: 434 DVFKLF-RLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVH-AYAFKVGLVSDAILSNA 491

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           +ID   + G L  A  +   M        W S++   A +G  K   ++  RM +L
Sbjct: 492 LIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNL 547



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 39/293 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+   +    ++IH +L KLG      + N  + +Y+R       + +F E   ++
Sbjct: 356 LLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRD 415

Query: 81  CISWNICLRGLLKSDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++WN  L   ++  +++   K+F      +P  D +S N+++S  A  GY + A     
Sbjct: 416 VVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMA----- 470

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                      KQ+H    + GL +S+ +L N+LID Y K G L
Sbjct: 471 ---------------------------KQVHAYAFKVGL-VSDAILSNALIDTYAKCGSL 502

Query: 197 YYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  +F  M    D+ SW+SLI G    GY + ALD F  MR  G  P+  T   V+ A
Sbjct: 503 DDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIA 562

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+++  +D+G   ++ +  + G +      S  IDL ++  RL ++ +  +Q+
Sbjct: 563 CSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQM 615


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/593 (28%), Positives = 304/593 (51%), Gaps = 37/593 (6%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           HG++ KLGF A   + N  +  Y+                               KS+ +
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYA-------------------------------KSNMI 468

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
             A+ VF+ +P  D +SWNS+ISG +S G +  A+E+F +M  QG      T   +L   
Sbjct: 469 GDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPAC 528

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + + +   G+ +HG  +++GL +    L N+L+DMY           +F +M + +++SW
Sbjct: 529 AQSRYWFAGRVVHGYSVKTGL-IGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSW 587

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            ++I+    +G  +        M   G  PD + ++  ++A     +L +GK V   +++
Sbjct: 588 TAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIR 647

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G      V +A ++++ KC  +E++  +F+++   D    N +I  Y R  F   +  L
Sbjct: 648 NGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSL 707

Query: 335 FQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  ML +  RP   T++C+L ++  I  +E G + H+ A++ GF  ++  +++L++MY K
Sbjct: 708 FSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVK 766

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G++  +  +F +L K++L+SW  ++ G   +G     + +FE++   G+ PD  + +A+
Sbjct: 767 CGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAI 826

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC + G   +G   F AM++EY + P  +HY CI+DLL + G L +A++   +MP +P
Sbjct: 827 LYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEP 886

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
             SIW S+L    I+ +VKL E VA+++  L+  +   Y LL   YA   RWEA+ ++K 
Sbjct: 887 DSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKN 946

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +   G+ + TG SWI ++++++ F A    H    +I   L  +   M  EG
Sbjct: 947 KIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEG 999



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 196/395 (49%), Gaps = 18/395 (4%)

Query: 92  LKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           LK  +L  A  VFD +P    DV  W S++S YA  G    A+ +F +MQ  GV P    
Sbjct: 147 LKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHA 206

Query: 150 FSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S +L  VSS      G+ IHG + + GL  +  V  N+LI +Y + G +  A  VF +M
Sbjct: 207 VSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAV-ANALIAVYSRCGRMEDAARVFDSM 265

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D ISWNS+I GCF++G+   A+D F  M   G      T+  V+ AC  L     GK
Sbjct: 266 HPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGK 325

Query: 267 QVFALSVKVGFLSNSIVLSATID----------LFSKCNRLEDSVRLFEQLD-RWDYAVI 315
            V   SVK G L     + + ID          ++ KC  +  + R+F+ +  + +  V 
Sbjct: 326 AVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVW 385

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N+++  Y + G  E +L LF  M    I P E  +SC+L  I  +     G   H   +K
Sbjct: 386 NLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVK 445

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GF +   V ++L+  YAK+  I  +  +F ++ ++D +SWN+++ G + NG  +E +++
Sbjct: 446 LGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIEL 505

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           F  +  +G   D +TL +VL AC    +   G +V
Sbjct: 506 FIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVV 540



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 198/447 (44%), Gaps = 51/447 (11%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S    + IHG L KLG      + N  + +YSR G  +D                  
Sbjct: 216 SLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED------------------ 257

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                        A +VFD +   D +SWNSMI G  S G+   A+++FSKM  QG   S
Sbjct: 258 -------------AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEIS 304

Query: 147 GFTFSILLSTVSSACH---GKQIHGSMIRSGL---------SLSNVVLGNSLIDMYGKLG 194
             T   +L   +   +   GK +HG  ++SGL          + +  LG+ L+ MY K G
Sbjct: 305 SVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCG 364

Query: 195 VLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            +  A  VF  M  + ++  WN ++ G    G  E +L  F  M   G +PDE+ IS ++
Sbjct: 365 DMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLL 424

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
              T L     G       VK+GF +   V +A I  ++K N + D+V +F ++ R D  
Sbjct: 425 KCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH----GSQFH 369
             N +IS     G    A+ELF  M  +       TL   LS +P          G   H
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTL---LSVLPACAQSRYWFAGRVVH 541

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
             ++K+G      +A++L++MY+      S+ +IF  + ++++VSW  ++    + G   
Sbjct: 542 GYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFD 601

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLA 456
           +   + +E++ +G+ PD   + + L A
Sbjct: 602 KVAGLLQEMVLDGIRPDVFAVTSALHA 628



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 36/337 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   + +   + +HG+  K G    T L N  LD+YS         Q+F  + QKN
Sbjct: 524 VLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKN 583

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S                               W +MI+ Y   G  D    +  +M L
Sbjct: 584 VVS-------------------------------WTAMITSYMRAGLFDKVAGLLQEMVL 612

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+RP  F  +  L   +   S   GK +HG  IR+G+    + + N+L++MY K   + 
Sbjct: 613 DGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGME-KLLPVANALMEMYVKCRNVE 671

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  +   D+ISWN+LI G   + +   +   F  M    + P+  T++ ++ A  
Sbjct: 672 EARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAA 730

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            + +L++G+++ A +++ GFL +S   +A +D++ KC  L  +  LF++L + +     +
Sbjct: 731 SISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTI 790

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
           MI+ YG +GFG+ A+ LF+ M    I P   + S +L
Sbjct: 791 MIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAIL 827



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 169/365 (46%), Gaps = 34/365 (9%)

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNM--EELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           VLG  L+  Y K G L  A  VF  M  +  D+  W SL+S    +G  + A+  F  M+
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQ 196

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G SPD + +S V+   + L +L +G+ +  L  K+G      V +A I ++S+C R+E
Sbjct: 197 CCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRME 256

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           D+ R+F+ +   D    N MI      G+   A++LF  M  +    TE +   VLS +P
Sbjct: 257 DAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQG---TEISSVTVLSVLP 313

Query: 359 ---------IPPVEHGSQFHSM------AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
                    I    HG    S       +++SG D +A + S L+ MY K G + S+  +
Sbjct: 314 ACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGID-DAALGSKLVFMYVKCGDMASARRV 372

Query: 404 FVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL-----LAC 457
           F  +  +  V  WN IM G  + G   E+L +F ++ E G+ PD   ++ +L     L+C
Sbjct: 373 FDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSC 432

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
              G V  G +V      +  V         +I    ++  +G A+ + + MP Q   S 
Sbjct: 433 ARDGLVAHGYIVKLGFGAQCAVCNA------LISFYAKSNMIGDAVLVFNRMPRQDTIS- 485

Query: 518 WESIL 522
           W S++
Sbjct: 486 WNSVI 490


>gi|297813281|ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320361|gb|EFH50783.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 688

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 182/578 (31%), Positives = 295/578 (51%), Gaps = 10/578 (1%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C           ++  + K        L N  +D++ + G   +    F EI +
Sbjct: 111 SAVLKACGLVGDIQLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEILR 170

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N  SWN  + G  K+  ++ A+ +F+ IP+P++VSWN +ISG+   G S  ALE   +M
Sbjct: 171 PNSTSWNTLISGYCKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKG-SPRALEFLVRM 229

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +G+   GF     L   S       GKQ+HG +++SGL  S   L ++LIDMY   G 
Sbjct: 230 QREGLVLDGFALPCGLKACSFGGLLTMGKQLHGCVVKSGLESSPFAL-SALIDMYSNCGS 288

Query: 196 LYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           L  A  VF   +      +  WNS++SG   +   E AL     +  S    D YT+S  
Sbjct: 289 LSDAADVFHQEKPALCNTVAVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYTLSGA 348

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           +  C  L NL  G QV +L V  G+  + IV S  +DL +    ++++ +LF +L   D 
Sbjct: 349 LKICINLVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQEAHKLFHRLPNKDI 408

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              + +I    + GF  +A  LF+ +++  +   +F +S +L     +  +  G Q H +
Sbjct: 409 IAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSSILKVCSSLASLGCGKQIHGL 468

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            IK G+ S  V A++L +MY K G ID+S  +F  + +RD+VSW  I++G  QNGR  E 
Sbjct: 469 CIKKGYQSEPVTATALGDMYVKCGEIDNSVVLFDGMLERDVVSWTGIIVGFGQNGRVEEA 528

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
              F +++   + P+ +T   +L AC + G +++   +   MK EYG+ P  EHY C++D
Sbjct: 529 FQYFHKMINSEIEPNEVTFLGLLSACRHSGLLEEARSILETMKCEYGLEPYLEHYYCVVD 588

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL QAG+  +A ++   MP +P  +IW S+L A   + +  L   +AE+++      P  
Sbjct: 589 LLGQAGRFQEAEELIKKMPLEPDKTIWMSLLTACGTHKNAGLITVIAEKLLKAFPEDPSL 648

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           Y+ L+ AYA  G W+ +  V++  +K G  K +G SWI
Sbjct: 649 YTSLSNAYATLGMWDQLSEVREAAKKLGA-KESGMSWI 685



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 216/451 (47%), Gaps = 22/451 (4%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C   ++F   ++I  H+ K G + + +L N  + +Y  F    D  ++FDE+ ++N 
Sbjct: 12  LRHCGKIQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMTERNI 71

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI--SGYASCG------YSDYALE 133
           ++W   + G         A++++  + E    + N  I  +   +CG         +  E
Sbjct: 72  VTWTTMVSGYTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGLVGDIQLGSFVYE 131

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSS--ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
              K  L+G         +L+++V      +G+    +     +   N    N+LI  Y 
Sbjct: 132 RIGKENLKGD-------VVLMNSVVDMFVKNGRLSEANSSFKEILRPNSTSWNTLISGYC 184

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G++  A  +F  + + +I+SWN LISG  + G    AL+    M+  G   D + +  
Sbjct: 185 KAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLDGFALPC 243

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW- 310
            + AC+    L  GKQ+    VK G  S+   LSA ID++S C  L D+  +F Q     
Sbjct: 244 GLKACSFGGLLTMGKQLHGCVVKSGLESSPFALSALIDMYSNCGSLSDAADVFHQEKPAL 303

Query: 311 --DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQ 367
               AV N M+S +      E AL L  L+ + D+    +TLS  L   I +  +  G Q
Sbjct: 304 CNTVAVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYTLSGALKICINLVNLRLGLQ 363

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS+ + SG++ + +V S L++++A  G+I  + ++F +L  +D+++++ ++ G  ++G 
Sbjct: 364 VHSLVVVSGYELDYIVGSILVDLHANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGF 423

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +    +F EL++ GL  D+  ++++L  C+
Sbjct: 424 NSLAFYLFRELIKLGLDADQFIVSSILKVCS 454



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 33/293 (11%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   I+  +  C K++   +G+ + A  VK G   N  + +  I ++     L D+ ++F
Sbjct: 4   DLKLIAAGLRHCGKIQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVF 63

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPV 362
           +++   +      M+S Y   G    A+EL++ M+  ++    EF  S VL +   +  +
Sbjct: 64  DEMTERNIVTWTTMVSGYTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGLVGDI 123

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           + GS  +    K     + V+ +S+++M+ K G +  +   F ++ + +  SWNT++ G 
Sbjct: 124 QLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEILRPNSTSWNTLISGY 183

Query: 423 TQNGRAAETLDVFEELLE------------------------------EGLPPDRITLAA 452
            + G   E + +F  + +                              EGL  D   L  
Sbjct: 184 CKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDKGSPRALEFLVRMQREGLVLDGFALPC 243

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            L AC++GG +  G  +   + +  G+       + +ID+    G L  A D+
Sbjct: 244 GLKACSFGGLLTMGKQLHGCVVKS-GLESSPFALSALIDMYSNCGSLSDAADV 295



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/221 (18%), Positives = 105/221 (47%), Gaps = 8/221 (3%)

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           I   + G    +  +K G   N  +A++++ MY     +  + ++F ++ +R++V+W T+
Sbjct: 18  IQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMTERNIVTWTTM 77

Query: 419 MMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           + G T +G+ ++ ++++  ++E +    +    +AVL AC   G +  G  V+  + +E 
Sbjct: 78  VSGYTCDGKPSKAIELYRRMVESQEEAANEFIYSAVLKACGLVGDIQLGSFVYERIGKEN 137

Query: 478 GVMPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
             + G+      ++D+  + G+L +A + +     +P  + W +++     Y    + E 
Sbjct: 138 --LKGDVVLMNSVVDMFVKNGRLSEA-NSSFKEILRPNSTSWNTLISG---YCKAGMVEE 191

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
                  +  P+ + ++ L   +  +G   A+  + ++ R+
Sbjct: 192 AVSLFNRIPQPNIVSWNCLISGFVDKGSPRALEFLVRMQRE 232


>gi|449531597|ref|XP_004172772.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 680

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/576 (31%), Positives = 294/576 (51%), Gaps = 16/576 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C         K I   +++    A T L N  +D++ + G+ +D +++F  I +
Sbjct: 107 SAVLKACGFVGDLGLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISR 166

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
               +WNI + G  K+  +  A K+F  +P P+VVSWNSMI+G+A  G S  ALE  S M
Sbjct: 167 ATTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNG-SQRALEFVSMM 225

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             + ++   FTF   L    SA HG     KQ+H  + + G   S   L ++LIDMY   
Sbjct: 226 HKRCIKLDDFTFPCALKI--SALHGLLFIGKQVHSYVTKLGYESSCFTL-SALIDMYSNC 282

Query: 194 GVLYYAFGVF-----LNMEELDIIS-WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
             L  A  +F      N    D ++ WNS++SG   +   + AL+    +  SG   D Y
Sbjct: 283 NDLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSY 342

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T    +  C  L +   G Q+  L V  G+  + +V S  +DL++K   ++D++ +F +L
Sbjct: 343 TFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRL 402

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
            R D    + +I    + G   +A  +F+ ML        F +S +L     +  +  G 
Sbjct: 403 PRKDIIAWSGLIMGCAQIGLNWLAFSMFKGMLELVNEIDHFVISTILKVCSNLASLRSGK 462

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H++ +KSG++      +SL++MY+K G I+ +  +F    ++D+VSW  I++G  QNG
Sbjct: 463 QVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDALTLFCCEQEKDIVSWTGIIVGCGQNG 522

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           +AAE +  F E++  G+ P+ IT   VL AC Y G V++   +F++MK  YG+ P  EHY
Sbjct: 523 KAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEPHLEHY 582

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL   G   +A  + + MPF+P  + W ++L A     D KL   VA+ +++   
Sbjct: 583 CCMVDLLASVGLPEEAEKLIANMPFEPNQTTWRTLLGACGTRNDTKLINRVADGLLEATP 642

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
             P  Y  L+ AYA  G W  + + ++  +K GI K
Sbjct: 643 NDPSTYVTLSNAYASLGMWHTLSKAREASKKFGIKK 678



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 209/448 (46%), Gaps = 15/448 (3%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C + ++F     IH +L K G     +L N  + +Y+ F    D  ++FDE+  +N 
Sbjct: 10  LRHCATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAEKVFDEMTDRNI 69

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY-SDYALEMFSKMQL 140
           ++W   +           A+++++++P+ +  +     +   +CG+  D  L    + ++
Sbjct: 70  VTWTTMVSAFTDGGRPYEAIRLYNDMPKSETPNGYMYSAVLKACGFVGDLGLGKLIQERI 129

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
              +    T  IL++++      C G       +   +S +     N ++  Y K G++ 
Sbjct: 130 YEDKLQADT--ILMNSLMDMFVKC-GSLNDAVEVFHNISRATTTTWNIIVSGYSKAGLMV 186

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M   +++SWNS+I+G  ++G  + AL+    M       D++T    +    
Sbjct: 187 EAEKLFHCMPHPNVVSWNSMIAGFADNG-SQRALEFVSMMHKRCIKLDDFTFPCALKISA 245

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW------D 311
               L  GKQV +   K+G+ S+   LSA ID++S CN L ++V+LF+Q   +      +
Sbjct: 246 LHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNCNDLIEAVKLFDQHSSFNASISDN 305

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS 370
            A+ N M+S Y      + AL L   +         +T    L   I +     G Q H 
Sbjct: 306 LALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHG 365

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + +  G++ + VV S L+++YAK  +ID +  IF +L ++D+++W+ ++MG  Q G    
Sbjct: 366 LIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWL 425

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACN 458
              +F+ +LE     D   ++ +L  C+
Sbjct: 426 AFSMFKGMLELVNEIDHFVISTILKVCS 453



 Score = 45.8 bits (107), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+      S ++  C +  S    K +H    K G+    +     LD+YS+ G  +D 
Sbjct: 437 VNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYSKCGEIEDA 496

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASC 125
           L LF    +K+ +SW   + G  ++     A++ F E+      P+ +++  ++S     
Sbjct: 497 LTLFCCEQEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYA 556

Query: 126 GYSDYALEMFSKMQ-LQGVRP 145
           G  + A  +F+ M+ + G+ P
Sbjct: 557 GLVEEARSIFNSMKSVYGLEP 577


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 307/607 (50%), Gaps = 36/607 (5%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           S  S ++  C    +  + +++H +  K    +  ++G+  LD+Y R G           
Sbjct: 103 SVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVG----------- 151

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                ++ + +VF E+P  + V+W ++I+G    G     L  F
Sbjct: 152 --------------------KIEKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYF 191

Query: 136 SKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           S+M         FTF+I L   +      +GKQIH  +I  G   + V + NSL  MY +
Sbjct: 192 SEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGFD-ATVWVANSLATMYTE 250

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +     +F NM E D++SW SLI      G+ E A++ F  MR S   P+E T + +
Sbjct: 251 CGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATM 310

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
            +AC  L  L  G+Q+      +G   +  V ++ + ++S C +L+ +  LF+ +   D 
Sbjct: 311 FSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDI 370

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSM 371
              + +I  Y + GFGE A + F  M +   +PT+F L+ +LS S  +  +E G Q H++
Sbjct: 371 ISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHAL 430

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A   G + N+ V S+L+ MY+K G+I  +++IF + D+ D+VS   ++ G  ++G++ E 
Sbjct: 431 AFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEA 490

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           +D+FE+ L+ G  PD +T  +VL AC + G +D G   F+ M+E+Y + P +EHY C++D
Sbjct: 491 IDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVD 550

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LLC+AG+L +A  +   M ++    +W ++L A    GD++     AER+++L       
Sbjct: 551 LLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATA 610

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
              L   Y+  G  E    V+K M+  G+ K  G S I IK+ +  F +G+  H   + I
Sbjct: 611 LVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPLSEDI 670

Query: 612 YLVLRLL 618
           Y +L L+
Sbjct: 671 YNILELV 677



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 218/427 (51%), Gaps = 8/427 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL--QG 142
           N  LR L+ + NL  A +VFD++P  D+VSW ++I GY +   SD A+ +FS M++    
Sbjct: 38  NSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPA 97

Query: 143 VRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           V P     S++L      S+  +G+ +H   +++ L LS+V +G+SL+DMY ++G +  +
Sbjct: 98  VSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSL-LSSVFVGSSLLDMYKRVGKIEKS 156

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF  M   + ++W ++I+G  ++G  +  L  F  M  S    D +T +I + AC  L
Sbjct: 157 CRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGL 216

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           R +  GKQ+    +  GF +   V ++   ++++C  + D + LFE +   D      +I
Sbjct: 217 RQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLI 276

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
             Y R G  E A+E F  M    + P E T + + S+   +  +  G Q H      G +
Sbjct: 277 VAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLN 336

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  V++S+M+MY+  G +DS++ +F  +  RD++SW+TI+ G +Q G   E    F  +
Sbjct: 337 DSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWM 396

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G  P    LA++L        ++ G  V  A+   +G+       + +I++  + G 
Sbjct: 397 RQSGPKPTDFALASLLSVSGNMAVLEGGRQVH-ALAFCFGLEQNSTVRSTLINMYSKCGN 455

Query: 499 LGKAIDI 505
           + +A  I
Sbjct: 456 IKEASKI 462


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/544 (31%), Positives = 297/544 (54%), Gaps = 9/544 (1%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L+K   +  A +VFD +P  DVV WNS+I GY   G  D A ++F +M   G++PS  T 
Sbjct: 175 LVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITM 234

Query: 151 SILLSTVSSACH---GKQIHGSMIRSGLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           + L+       +   GK +HG ++  GL L N +++  S +DMY K+G +  A  VF  M
Sbjct: 235 TSLIQACGGIGNLKLGKCMHGYVL--GLGLGNDILVLTSFVDMYSKMGDIESARWVFYKM 292

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              +++SWN++ISGC  +G    + D F+ +  S    D  TI  ++  C++  +L  GK
Sbjct: 293 PTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGK 352

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +   +++  F SN I+ +A +DL+SKC  L+ +  +F ++   +      M+    + G
Sbjct: 353 ILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNG 411

Query: 327 FGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E AL LF  M  E I     T +S V S   +  ++ G   H    + GF  + V  +
Sbjct: 412 HAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMT 471

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +L++MYAK G I+ +  IF      +D+V WN+++ G   +G   + + ++ +++EEGL 
Sbjct: 472 ALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLK 531

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P++ T  ++L AC++   V++G+ +F++M+ ++ + P E+HYAC++DLL +AG+  +A  
Sbjct: 532 PNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQA 591

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   MPFQPG ++ E++L     + ++ L    +++++ L   +P  Y +L+  YA   R
Sbjct: 592 LIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARR 651

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           W+ +  ++ +MR  G+ K  G S +   N ++TF AG+  H   ++IY  L  L   +E 
Sbjct: 652 WDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVET 711

Query: 625 EGCV 628
            G V
Sbjct: 712 SGYV 715



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 228/455 (50%), Gaps = 13/455 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L+ A  VFD+  +P  +  N+M+ GY   G     LE+F  M+ + +     + +  L 
Sbjct: 79  SLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALK 138

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +S+     G +I  S +  G+   N  +G+S+I    K G +  A  VF  M   D++
Sbjct: 139 ACASSLDYEMGMEIISSAVEKGME-KNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVV 197

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WNS+I G   +G  ++A   F+ M  SG  P   T++ +I AC  + NL  GK +    
Sbjct: 198 CWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYV 257

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           + +G  ++ +VL++ +D++SK   +E +  +F ++   +    N MIS   R G    + 
Sbjct: 258 LGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESF 317

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSI----PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           +LF  ++R       F L+ ++S +        +  G   H  AI+S F+SN +++++++
Sbjct: 318 DLFHRLVRSS---GGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIV 373

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           ++Y+K GS+  +T +F ++  R++++W  +++GL QNG A + L +F ++ EEG+  + +
Sbjct: 374 DLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSV 433

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +++ +C + G + +G  +   +    G      +   ++D+  + G++  A  I S 
Sbjct: 434 TFVSLVHSCAHLGSLKRGRSIHGHLF-RLGFAFDIVNMTALVDMYAKCGKINLAERIFSH 492

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
                   +W S++    ++G       +  +M++
Sbjct: 493 GSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIE 527



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 188/399 (47%), Gaps = 47/399 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + LI  C    +    K +HG++  LG      +    +D+YS+ G  +    +F ++P 
Sbjct: 235 TSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPT 294

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N +SW                               N+MISG    G    + ++F ++
Sbjct: 295 RNLVSW-------------------------------NAMISGCVRNGLVGESFDLFHRL 323

Query: 139 QLQGVRPS-GFTFSILL------STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
               VR S GF  + ++      S  +S   GK +HG  IRS    SN++L  +++D+Y 
Sbjct: 324 ----VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS--FESNLILSTAIVDLYS 377

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  A  VF  M++ ++I+W +++ G   +G+ E AL  F  M+  G + +  T   
Sbjct: 378 KCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVS 437

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RW 310
           ++++C  L +L +G+ +     ++GF  + + ++A +D+++KC ++  + R+F       
Sbjct: 438 LVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISK 497

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQF 368
           D  + N MI+ YG +G G  A+ ++  M+ E ++P + T   +LS+      VE G S F
Sbjct: 498 DVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLF 557

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           +SM             + L+++ ++ G  + +  +  K+
Sbjct: 558 NSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM 596



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 160/350 (45%), Gaps = 10/350 (2%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K  H  +I + LS    V    L+  Y  L  L  A  VF    +   +  N+++ G   
Sbjct: 49  KSTHAQIITNSLSTDQFV-ATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQ 107

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           SG     L+ F  MR      D  + +  + AC    + + G ++ + +V+ G   N  V
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFV 167

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            S+ I    K  ++ ++ R+F+ +   D    N +I  Y + G  +VA +LF  M    I
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGI 227

Query: 344 RPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +P+  T++ ++ +   I  ++ G   H   +  G  ++ +V +S ++MY+K G I+S+  
Sbjct: 228 KPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARW 287

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F K+  R+LVSWN ++ G  +NG   E+ D+F  L+      D  T+ ++L  C+    
Sbjct: 288 VFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTAS 347

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHY---ACIIDLLCQAGQLGKAIDITSTM 509
           +  G ++       +     E +      I+DL  + G L +A  + + M
Sbjct: 348 LATGKILHGCAIRSF-----ESNLILSTAIVDLYSKCGSLKQATFVFNRM 392



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 7/202 (3%)

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           +NL   K   A  +     ++  V +  +  +S    LE +  +F+Q  +    + N M+
Sbjct: 43  KNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAML 102

Query: 320 STYGRYGFGEVALELFQLM----LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
             Y + G     LELF LM    L  D     F L    SS+     E G +  S A++ 
Sbjct: 103 CGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLD---YEMGMEIISSAVEK 159

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G + N  V SS++    K G I  +  +F  +  +D+V WN+I+ G  Q G       +F
Sbjct: 160 GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLF 219

Query: 436 EELLEEGLPPDRITLAAVLLAC 457
            E+   G+ P  IT+ +++ AC
Sbjct: 220 FEMHGSGIKPSPITMTSLIQAC 241


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 165/547 (30%), Positives = 295/547 (53%), Gaps = 16/547 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---ST 156
           A KVFD +P  +VV W ++++GY      + A+E+F  M   G  PS FT SI L   S+
Sbjct: 34  ARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSS 93

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           + S   GKQ H  +I+  +S  +  +GN+L  +Y K G L  +   F    E D+ISW +
Sbjct: 94  LESITLGKQFHAFIIKYRIS-HDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTT 152

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +IS C ++G   + L  F  M +    P+++T++ V++ C+ +++ D G QV +LS K+G
Sbjct: 153 IISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLG 212

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR-----------Y 325
             SN  + ++ + L+ KC  ++++  LF +++  +    N MI+ + +            
Sbjct: 213 HESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQ 272

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
             G  AL ++  + R   +P  FTLS +L+    +  +E G Q H+  IKSGF S+ VV 
Sbjct: 273 QTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVG 332

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L++MY K GSI+ + + F+ +  R L+SW +++    ++G++   L +FE++   G  
Sbjct: 333 TALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFR 392

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P++IT   VL AC++ G VD+ +  F  M++EY + P  +HY C++D+  + G+L +A D
Sbjct: 393 PNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFD 452

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   M  +P   IW  ++     +G+ +L    AE+++ L+  S   Y +L   Y    R
Sbjct: 453 VIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAER 512

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           WE +  V+++M++  + K+   S I IK  +++F      H+   +++ +L  L    + 
Sbjct: 513 WEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKS 572

Query: 625 EGCVYLE 631
            G   LE
Sbjct: 573 LGYEQLE 579



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 213/451 (47%), Gaps = 51/451 (11%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           ++ C S +S    K  H  + K   +  + +GN    LYS+FG+                
Sbjct: 88  LNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGS---------------- 131

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                          LD+++K F E  E DV+SW ++IS     G +   L +F +M  +
Sbjct: 132 ---------------LDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFE 176

Query: 142 GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            V P+ FT + +L   ST+ S+  G Q+H    + G   SN+ + NSL+ +Y K G +  
Sbjct: 177 NVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHE-SNLRITNSLVYLYLKCGCIDE 235

Query: 199 AFGVFLNMEELDIISWNSLISGCFNS-----------GYGELALDQFYSMRYSGYSPDEY 247
           A  +F  ME  ++I+WN++I+G   +             G  AL  +  +  SG  PD +
Sbjct: 236 AKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLF 295

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T+S ++  C++L  L++G+Q+ A ++K GFLS+ +V +A +D++ KC  +E + + F  +
Sbjct: 296 TLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDM 355

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ 367
                     MI+++ R+G  + AL+LF+ M     RP + T   VL++     +   + 
Sbjct: 356 STRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEAL 415

Query: 368 FHSMAIKSGFDSNAVVA--SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQ 424
            +   ++  +    V+     L++M+ + G +D + ++  ++D + +   W  ++ G   
Sbjct: 416 EYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRN 475

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           +G         E+LL+  L P       VLL
Sbjct: 476 HGNEELGFYAAEQLLK--LKPRSTETYVVLL 504



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 199/398 (50%), Gaps = 18/398 (4%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +H  +I++G      V+ + L+++Y K GV+  A  VF N+   +++ W +L++G   + 
Sbjct: 2   VHAHVIKTGTHEEFFVM-SFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
             E+A++ F  M  SG  P  +T+SI +NAC+ L ++  GKQ  A  +K     +S + +
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A   L+SK   L+ SV+ F +    D      +IS  G  G   + L LF  ML E++ P
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 346 TEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            +FTL+ VLS    I   + G Q HS++ K G +SN  + +SL+ +Y K G ID +  +F
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 405 VKLDKRDLVSWNTIMMGLTQ-----------NGRAAETLDVFEELLEEGLPPDRITLAAV 453
            +++ ++L++WN ++ G  Q                E L ++ +L   G  PD  TL+++
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSI 300

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L  C+    +++G  +  A   + G +        ++D+  + G + +A      M  + 
Sbjct: 301 LTVCSRLAALEQGEQI-HAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRT 359

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
             S W S++ + A +G    +++  +   D++L    P
Sbjct: 360 LIS-WTSMITSFARHGQ---SQHALQLFEDMRLAGFRP 393



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 26/334 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C + +S D    +H    KLG  ++  + N  + LY + G  D+   LF+ +  
Sbjct: 186 TSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEY 245

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN I+WN  + G  ++ +L                        +++      AL M+ K+
Sbjct: 246 KNLITWNAMIAGHAQAMDLAK--------------------DNFSAQQTGTEALGMYLKL 285

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P  FT S +L+  S       G+QIH   I+SG  LS+VV+G +L+DMY K G 
Sbjct: 286 NRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGF-LSDVVVGTALVDMYDKCGS 344

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   FL+M    +ISW S+I+     G  + AL  F  MR +G+ P++ T   V+ A
Sbjct: 345 IERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAA 404

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           C+    +D+  + F +  K   +   +      +D+F +  RL+++  + +++D      
Sbjct: 405 CSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEF 464

Query: 315 I-NVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           I  ++I+    +G  E+     + +L+   R TE
Sbjct: 465 IWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTE 498



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 97/237 (40%), Gaps = 54/237 (22%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C    + +  + IH    K GF +   +G   +D+Y + G+      
Sbjct: 291 KPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGS------ 344

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                    ++ A K F ++    ++SW SMI+ +A  G S +A
Sbjct: 345 -------------------------IERARKAFLDMSTRTLISWTSMITSFARHGQSQHA 379

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN------- 184
           L++F  M+L G RP+  TF  +L+  S        H  M+   L    ++          
Sbjct: 380 LQLFEDMRLAGFRPNQITFVGVLAACS--------HAGMVDEALEYFEIMQKEYKIKPVM 431

Query: 185 ----SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYS 236
                L+DM+ +LG L  AF V   M+ E +   W  LI+GC N G  EL    FY+
Sbjct: 432 DHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELG---FYA 485


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 179/555 (32%), Positives = 296/555 (53%), Gaps = 38/555 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D    A+ VF  I EP+ + WN+M+ GYA       AL+++  M   G+ P+ +TF  LL
Sbjct: 14  DGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLL 73

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-------- 203
            + + +     G+QIHG +++ G    ++ +  SLI MY + G L  A  VF        
Sbjct: 74  KSCAKSKAFEEGQQIHGHVLKLGYE-PDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 204 ----------------LNMEEL-------DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                            + +E+       D++SWN++ISG   +G  + AL+ F  M  +
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T+  V++AC + R+++ G+QV +     GF SN  +++A IDL+SKC ++E +
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             LFE L   D    N +I  Y      + AL LFQ MLR    P + T+  +L +   +
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 360 PPVEHGSQFHSMAIKSGFD-SNA-VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             ++ G   H    K   D +NA  + +SL++MYAK G I+++ ++F  +  + L SWN 
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +GRA    D+F  + + G+ PD IT   +L AC++ G +D G  +F +M ++Y
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDY 432

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL  +G   +A ++  TMP +P   IW S+L+A   +G+++L E+ 
Sbjct: 433 DITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESF 492

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A  +M ++  +P  Y LL+  YA  G W+ + +V+ ++   G+ KV GCS I I + ++ 
Sbjct: 493 ARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHE 552

Query: 598 FNAGELQHHGGQKIY 612
           F  G+  H   ++IY
Sbjct: 553 FIVGDKLHPRNREIY 567



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 184/341 (53%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F+  + IHGH+ KLG+    Y+    + +Y++ G  +D  ++FD    ++
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G   S N+ +A ++FDEIP  DVVSWN+MISGYA  G    ALE+F +M  
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             VRP   T   +LS  +   S   G+Q+H  +   G   SN+ + N+LID+Y K G + 
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFG-SNLKIVNALIDLYSKCGQVE 250

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  +   D++SWN+LI G  +    + AL  F  M  SG SP++ TI  ++ AC 
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 258 KLRNLDKGKQVFA-LSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  +D G+ +   +  K+  ++N+  L ++ ID+++KC  +E + ++F  +     +  
Sbjct: 311 HLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G      +LF  M +  I P + T   +LS+
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/592 (29%), Positives = 304/592 (51%), Gaps = 63/592 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C  +   +  K IH H  K  F+++ ++    +D+Y++     +   LF+  P K     
Sbjct: 148 CSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKR---- 203

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                     + V W +M++GY+  G    A+E F  M+ +G+ 
Sbjct: 204 --------------------------NHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIE 237

Query: 145 PSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            + FTF  +L+   ++S+   G Q+HG ++RSG   +NV +G++L+DMY K G L  A  
Sbjct: 238 CNQFTFPSILTACGSISACGFGAQVHGCIVRSGFG-ANVFVGSALVDMYSKCGDLSNARR 296

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +   ME  D +SWNS+I GC   G GE AL  F  M       DE+T   V+N  + + +
Sbjct: 297 MLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMD 356

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +     V +L VK GF +  +V +A +D+++K    + +  +FE++   D      +++ 
Sbjct: 357 MRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTG 416

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
               G  E AL LF  M    I P +  ++ VLS+   +  +E G Q H+  +KSG  S+
Sbjct: 417 CVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSS 476

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V +SL+ MYAK G I+ + ++F  ++ +D+++W  +++G  QNGR  +          
Sbjct: 477 LSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD---------- 526

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
                             + G V+ G   F +M+E YG+ PG EHYAC+IDLL ++G+L 
Sbjct: 527 ------------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLM 568

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A ++ + M  QP  ++W+++L A  ++G+V+L E  A  + +L+  + +PY LL+  Y+
Sbjct: 569 EAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYS 628

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
             G+WE   + +++M+  G++K  GCSWI + ++++ F + +  H    +IY
Sbjct: 629 AAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIY 680



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 222/409 (54%), Gaps = 6/409 (1%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  L   S+ G  DD  +LFD +P ++  SWN  +     S  L+ A K+F E P    +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSM 170
           +W+S+ISGY   G    ALE+F +MQ +G RP+ FT+  +L   S       GKQIH   
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-LNMEELDIISWNSLISGCFNSGYGEL 229
           I++    SN  +   L+DMY K   +  A  +F L  ++ + + W ++++G   +G G  
Sbjct: 165 IKTQFD-SNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHK 223

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A++ F  MR  G   +++T   ++ AC  +     G QV    V+ GF +N  V SA +D
Sbjct: 224 AIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVD 283

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++SKC  L ++ R+ E ++  D    N MI    R G GE AL LF++M    ++  EFT
Sbjct: 284 MYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFT 343

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
              VL+    +  + +    HS+ +K+GF++  +V ++L++MYAK G  D + ++F K+ 
Sbjct: 344 YPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT 403

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            +D++SW +++ G   NG   E L +F E+   G+ PD+I +AAVL AC
Sbjct: 404 DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSAC 452



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 197/435 (45%), Gaps = 72/435 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  +  F   +HG + + GF A+ ++G+  +D+YS+ G                
Sbjct: 246 ILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCG---------------- 289

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +L  A ++ + +   D VSWNSMI G    G  + AL +F  M L
Sbjct: 290 ---------------DLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHL 334

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + ++   FT+  +L   S V    +   +H  ++++G     +V  N+L+DMY K G   
Sbjct: 335 RHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLV-NNALVDMYAKRGYFD 393

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YAF VF  M + D+ISW SL++GC ++G  E AL  F  MR  G  PD+  I+ V++AC 
Sbjct: 394 YAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACA 453

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +L  L+ GKQV A  +K G  S+  V ++ + +++KC  +ED+ ++F+ ++  D      
Sbjct: 454 ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTA 513

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG-SQFHSMAIKSG 376
           +I  Y + G G     L                           VEHG S F SM    G
Sbjct: 514 LIVGYAQNGRGRDHAGL---------------------------VEHGRSYFQSMEEVYG 546

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNG------RAA 429
                   + ++++  ++G +  + E+  ++  + D   W  ++     +G      RAA
Sbjct: 547 IKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAA 606

Query: 430 ETLDVFEELLEEGLP 444
             L  FE   +  +P
Sbjct: 607 NNL--FELEPKNAVP 619



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 169/332 (50%), Gaps = 11/332 (3%)

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N++I  Y   G L  A  +F        I+W+SLISG    G    AL+ F+ M+Y G  
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+++T   V+  C+    L+KGKQ+ A ++K  F SN+ V++  +D+++KC  + ++  L
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 304 FE-QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPP 361
           FE   D+ ++ +   M++ Y + G G  A+E F+ M  E I   +FT   +L++   I  
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
              G+Q H   ++SGF +N  V S+L++MY+K G + ++  +   ++  D VSWN++++G
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
             + G   E L +F  +    +  D  T  +VL   ++   +   M V S +     V  
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLI-----VKT 370

Query: 482 GEEHYACI----IDLLCQAGQLGKAIDITSTM 509
           G E Y  +    +D+  + G    A D+   M
Sbjct: 371 GFEAYKLVNNALVDMYAKRGYFDYAFDVFEKM 402



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 46/228 (20%)

Query: 9   HVNKASLSYCSQLIDRCLSF-KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           H+     +Y S L   C SF      A ++H  + K GF A+  + N  +D+Y++ G  D
Sbjct: 336 HMKIDEFTYPSVL--NCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFD 393

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
               +F+++  K+ ISW                                S+++G    G 
Sbjct: 394 YAFDVFEKMTDKDVISW-------------------------------TSLVTGCVHNGS 422

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNV 180
            + AL +F +M++ G+ P      I+++ V SAC        GKQ+H + ++SGL  S++
Sbjct: 423 YEEALRLFCEMRIMGIHPD----QIVIAAVLSACAELTVLEFGKQVHANFLKSGLG-SSL 477

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            + NSL+ MY K G +  A  VF +ME  D+I+W +LI G   +G G 
Sbjct: 478 SVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR 525


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 168/549 (30%), Positives = 306/549 (55%), Gaps = 10/549 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTF 150
           +K   +  AL++FDE+ +PD+V+W+SM+SG+   G    A+E F +M +   V P   T 
Sbjct: 107 IKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTL 166

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             L+S    +S++  G+ +HG +IR G S +++ L NSL++ Y K      A  +F  + 
Sbjct: 167 ITLVSACTKLSNSRLGRCVHGFVIRRGFS-NDLSLVNSLLNCYAKSRAFKEAVNLFKMIA 225

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E D+ISW+++I+    +G    AL  F  M   G  P+  T+  V+ AC    +L++G++
Sbjct: 226 EKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRK 285

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
              L+++ G  +   V +A +D++ KC   E++  +F ++ R D      +IS +   G 
Sbjct: 286 THELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGM 345

Query: 328 GEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
              ++E F +ML E+  RP    +  VL S   +  +E    FHS  IK GFDSN  + +
Sbjct: 346 AHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGA 405

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LP 444
           SL+E+Y++ GS+ +++++F  +  +D V W +++ G   +G+  + L+ F  +++   + 
Sbjct: 406 SLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVK 465

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T  ++L AC++ G + +G+ +F  M  +Y + P  EHYA ++DLL + G L  AI+
Sbjct: 466 PNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIE 525

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           IT  MPF P   I  ++L A  I+ + ++ E VA+++ +L+      Y L++  Y ++G 
Sbjct: 526 ITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGE 585

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           WE + +++  +++ GI K    S I I+ +++ F A +  H   + +Y +L+ L   M++
Sbjct: 586 WENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMKE 645

Query: 625 --EGCVYLE 631
             E CVY E
Sbjct: 646 DLENCVYFE 654



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 226/436 (51%), Gaps = 8/436 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST--- 156
           A ++F E+ +  +  WN+++   +     +  L  FS M     +P  FT  + L     
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +    +G+ IHG + +     S++ +G+SLI MY K G +  A  +F  +E+ DI++W+S
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSS 132

Query: 217 LISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++SG   +G    A++ F  M   S  +PD  T+  +++ACTKL N   G+ V    ++ 
Sbjct: 133 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRR 192

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           GF ++  ++++ ++ ++K    +++V LF+ +   D    + +I+ Y + G    AL +F
Sbjct: 193 GFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVF 252

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M+ +   P   T+ CVL +      +E G + H +AI+ G ++   V+++L++MY K 
Sbjct: 253 NDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKC 312

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE-ELLEEGLPPDRITLAAV 453
            S + +  +F ++ ++D+VSW  ++ G T NG A  +++ F   LLE    PD I +  V
Sbjct: 313 FSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKV 372

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L +C+  GF+++    F +   +YG        A +++L  + G LG A  + + +  + 
Sbjct: 373 LGSCSELGFLEQAK-CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKD 431

Query: 514 GCSIWESILRASAIYG 529
              +W S++    I+G
Sbjct: 432 TV-VWTSLITGYGIHG 446



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 192/422 (45%), Gaps = 42/422 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    + +HG + + GF+    L N  L+ Y++     + + LF  I +K+
Sbjct: 169 LVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKD 228

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ISW                               +++I+ Y   G +  AL +F+ M  
Sbjct: 229 VISW-------------------------------STVIACYVQNGAAAEALLVFNDMMD 257

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T   +L   ++A     G++ H   IR GL  + V +  +L+DMY K     
Sbjct: 258 DGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE-TEVKVSTALVDMYMKCFSPE 316

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVINAC 256
            A+ VF  +   D++SW +LISG   +G    ++++F  M     + PD   +  V+ +C
Sbjct: 317 EAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSC 376

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++L  L++ K   +  +K GF SN  + ++ ++L+S+C  L ++ ++F  +   D  V  
Sbjct: 377 SELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWT 436

Query: 317 VMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAI 373
            +I+ YG +G G  ALE F  M++  +++P E T   +LS+     + H     F  M  
Sbjct: 437 SLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVN 496

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAE 430
                 N    + L+++  + G +D++ EI  ++           ++G   + QNG  AE
Sbjct: 497 DYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAE 556

Query: 431 TL 432
           T+
Sbjct: 557 TV 558



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 41/194 (21%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C      + AK  H ++ K GF+++ ++G   ++LYSR G+  +  ++F+ I  K
Sbjct: 371 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 430

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM- 138
                                          D V W S+I+GY   G    ALE F+ M 
Sbjct: 431 -------------------------------DTVVWTSLITGYGIHGKGTKALETFNHMV 459

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS------LIDMYGK 192
           +   V+P+  TF   LS +S+  H   IH  +    L +++  L  +      L+D+ G+
Sbjct: 460 KSSEVKPNEVTF---LSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGR 516

Query: 193 LGVLYYAFGVFLNM 206
           +G L  A  +   M
Sbjct: 517 VGDLDTAIEITKRM 530



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           + S+D+  ++F ++ KR L  WNT++  L++  +  E L  F  +  +   PD  TL   
Sbjct: 8   SSSVDAR-QMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVA 66

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY--ACIIDLLCQAGQLGKAIDITSTMPF 511
           L AC     V+ G ++   +K++  V  G + Y  + +I +  + G++ +A+ +   +  
Sbjct: 67  LKACGELREVNYGEMIHGFVKKD--VTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE- 123

Query: 512 QPGCSIWESIL 522
           +P    W S++
Sbjct: 124 KPDIVTWSSMV 134


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 188/604 (31%), Positives = 316/604 (52%), Gaps = 55/604 (9%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LFD++P K+  SWN+ L G  ++  L  A  +FD +PE DVVSWN+M+SGY   G+ D A
Sbjct: 86  LFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEA 145

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            ++F +M  +    +  +++ LL+    +  G+      +    S   ++  N L+  Y 
Sbjct: 146 RDVFDRMPHK----NSISWNGLLAAYVRS--GRLEEARRLFESKSDWELISCNCLMGGYV 199

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP--DEYTI 249
           K  +L  A  +F  +   D+ISWN++ISG    G      D   + R    SP  D +T 
Sbjct: 200 KRNMLGDARQLFDQIPVRDLISWNTMISGYAQDG------DLSQARRLFEESPVRDVFTW 253

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + ++ A  +   LD+ ++VF    +   +S +++++     +++  R++    LFE++  
Sbjct: 254 TAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAG----YAQYKRMDMGRELFEEMPF 309

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLRED--------------------------- 342
            +    N+MIS Y + G    A  LF +M + D                           
Sbjct: 310 PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369

Query: 343 IRPTE----FTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            R  E     T  C LS+   I  +E G Q H   +++G++   +V ++L+ MY K G I
Sbjct: 370 KRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCI 429

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D + ++F  +  +D+VSWNT++ G  ++G   + L VFE ++  G+ PD IT+  VL AC
Sbjct: 430 DEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSAC 489

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ G  D+G   F +M ++YG+ P  +HYAC+IDLL +AG L +A ++   MPF+P  + 
Sbjct: 490 SHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAAT 549

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W ++L AS I+G+++L E  AE +  ++  +   Y LL+  YA  GRW  + +++  MR+
Sbjct: 550 WGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQ 609

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL-- 635
            G+ K  G SW+ ++N+I+TF  G+  H    +IY  L  L  +M+ EG  Y+   KL  
Sbjct: 610 IGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEG--YVSSTKLVL 667

Query: 636 -DVE 638
            DVE
Sbjct: 668 HDVE 671



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 157/410 (38%), Gaps = 61/410 (14%)

Query: 234 FYSMRYSGYSP----DEYTISIVINACTKLRNLDKGKQVFALSVKVGF-LSNSIVLSATI 288
           F+  R + Y      D +T+       T +RN   G    AL V     L NS+  +A I
Sbjct: 15  FHVQRPTNYPKPHFEDPHTVKCTKAISTHMRN---GHCDLALCVFDAMPLRNSVSYNAMI 71

Query: 289 ----------------------DLFS---------KCNRLEDSVRLFEQLDRWDYAVINV 317
                                 DLFS         +  RL D+  LF+ +   D    N 
Sbjct: 72  SGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNA 131

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF 377
           M+S Y R G  + A ++F  M  ++       L+  + S  +              +S  
Sbjct: 132 MLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARR-------LFESKS 184

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           D   +  + LM  Y K   +  + ++F ++  RDL+SWNT++ G  Q+G  ++       
Sbjct: 185 DWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA----RR 240

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           L EE    D  T  A++ A    G +D+   VF  M ++      E  Y  +I    Q  
Sbjct: 241 LFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR-----EMSYNVMIAGYAQYK 295

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           ++    ++   MPF P    W  ++      GD+    N+ + M        + ++ +  
Sbjct: 296 RMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQARNLFDMMPQR---DSVSWAAIIA 351

Query: 558 AYAMRGRWEAIVRVKKVMRKNG--INKVTGCSWIGIKNRIYTFNAGELQH 605
            YA  G +E  + +   M+++G  +N+ T C  +     I     G+  H
Sbjct: 352 GYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVH 401



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 89/229 (38%), Gaps = 39/229 (17%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           ++C  L   C    + +  K +HG + + G+     +GN  + +Y + G  D+   +F  
Sbjct: 380 TFCCAL-SACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQG 438

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +  K+ +SW                               N+M++GYA  G+   AL +F
Sbjct: 439 VQHKDIVSW-------------------------------NTMLAGYARHGFGRQALTVF 467

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             M   GV+P   T   +LS  S       G +   SM +      N      +ID+ G+
Sbjct: 468 ESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGR 527

Query: 193 LGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
            G L  A  +  NM  E D  +W +L+       N   GE A +  + M
Sbjct: 528 AGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKM 576


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/600 (27%), Positives = 316/600 (52%), Gaps = 47/600 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ +CL  +S+   + +HGH+ K G + + ++ +  +++Y++ G                
Sbjct: 70  LLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCG---------------- 113

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          N++ A +VF+ +P  +VV+W +++ G+       +A+ +F +M  
Sbjct: 114 ---------------NMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLY 158

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  PS +T S +L   S++ S   G Q H  +I+  L     V G++L  +Y K G L 
Sbjct: 159 AGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSV-GSALCSLYSKCGRLE 217

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  + E ++ISW S +S C ++G     L  F  M      P+E+T++  ++ C 
Sbjct: 218 DALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCC 277

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           ++ +L+ G QV +L +K G+ SN  V ++ + L+ K   + ++ R F ++D       N 
Sbjct: 278 EIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNA 337

Query: 318 MISTYGRY-----------GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
           MI+ + +              G  AL++F  + +  ++P  FTLS VLS    +  +E G
Sbjct: 338 MIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQG 397

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  IK+GF S+ +V++SL+ MY K GSI+ +++ F+++  R +++W +++ G +Q+
Sbjct: 398 EQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQH 457

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G + + L +FE++   G+ P+ +T   VL AC++ G V + +  F  M+++Y + P  +H
Sbjct: 458 GMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDH 517

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y C++D+  + G+L +A++    M ++P   IW + +     +G+++L    +E+++ L+
Sbjct: 518 YECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLK 577

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
              P  Y LL   Y    R++ + RV+K+M    + K+   SWI IK+++Y+F   +  H
Sbjct: 578 PKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTH 637



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 165/355 (46%), Gaps = 52/355 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S +S       H ++ K   +  T +G+    LYS+ G  +D L+ F  I +
Sbjct: 169 SAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIRE 228

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                               V+SW S +S     G     L +F +M
Sbjct: 229 KN-------------------------------VISWTSAVSACGDNGAPVKGLRLFVEM 257

Query: 139 QLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             + ++P+ FT   L S +S  C       G Q+    I+ G   SN+ + NSL+ +Y K
Sbjct: 258 ISEDIKPNEFT---LTSALSQCCEIPSLELGTQVCSLCIKFGYE-SNLRVRNSLLYLYLK 313

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFN-----------SGYGELALDQFYSMRYSG 241
            G +  A   F  M+++ +++WN++I+G                 G  AL  F  +  SG
Sbjct: 314 SGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSG 373

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD +T+S V++ C+++  +++G+Q+ A ++K GFLS+ IV ++ I +++KC  +E + 
Sbjct: 374 MKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERAS 433

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           + F ++          MI+ + ++G  + AL +F+ M    +RP   T   VLS+
Sbjct: 434 KAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSA 488



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 58/254 (22%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C    + +  + IH    K GF +   +    + +Y++ G+      
Sbjct: 375 KPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGS------ 428

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                    ++ A K F E+    +++W SMI+G++  G S  A
Sbjct: 429 -------------------------IERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQA 463

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN------- 184
           L +F  M L GVRP+  TF  +LS  S        H  M+   L+   ++          
Sbjct: 464 LHIFEDMSLAGVRPNTVTFVGVLSACS--------HAGMVSQALNYFEIMQKKYKIKPVM 515

Query: 185 ----SLIDMYGKLGVLYYAFGVF--LNMEELDIISWNSLISGCFNSGYGEL---ALDQFY 235
                ++DM+ +LG L  A      +N E  + I W++ I+GC + G  EL   A +Q  
Sbjct: 516 DHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFI-WSNFIAGCRSHGNLELGFYASEQLL 574

Query: 236 SMRYSGYSPDEYTI 249
           S++     P+ Y +
Sbjct: 575 SLKPK--DPETYVL 586


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 183/678 (26%), Positives = 330/678 (48%), Gaps = 88/678 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK- 93
           + +H      G   +  + N+ +  YS +   DD   LFD +  ++ +SW++ + G  K 
Sbjct: 98  RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 157

Query: 94  -------------------SDN-----------------------------LDTALKVFD 105
                               DN                             ++ A  +FD
Sbjct: 158 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFD 217

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---- 161
           ++ E D+V+W  MI GYA CG ++ +L +F KM+ +GV P      + + TV  AC    
Sbjct: 218 KMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD----KVAMVTVVFACAKLG 273

Query: 162 --HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
             H  +I    I+      +V+LG ++IDMY K G +  A  +F  MEE ++ISW+++I+
Sbjct: 274 AMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIA 333

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
                G G  ALD F  M  SG  PD+ T++ ++ AC   RNL + +QV A +   G L 
Sbjct: 334 AYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQ 393

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           N IV +  +  +S    L+D+  LF+ +   D    +VM+  + + G        F+ ++
Sbjct: 394 NLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI 453

Query: 340 REDIRPTEFTL-----------------------------SCVLSSIPIPPVEHGSQFHS 370
           R   RP  +TL                             + V +   +  +        
Sbjct: 454 RCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 513

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
              +  F  + ++ +++++M+AK G ++S+ EIF ++++++++SW+ ++     +G+  +
Sbjct: 514 YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 573

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            LD+F  +L  G+ P++ITL ++L AC++ G V++G+  FS M E+Y V    +HY C++
Sbjct: 574 ALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVV 633

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG+L +A+ +  +M  +    +W + L A   + DV L E  A  +++LQ  +P 
Sbjct: 634 DLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPG 693

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  YA  GRWE + + + +M +  + K+ G +WI + N+ + F+ G+  H   ++
Sbjct: 694 HYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKE 753

Query: 611 IYLVLRLLTWEMEDEGCV 628
           IY +L+ L  ++E  G V
Sbjct: 754 IYEMLKSLGNKLELVGYV 771



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 177/412 (42%), Gaps = 65/412 (15%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +   A+ I  ++ +  F     LG   +D+Y++ G  +   ++FD + +KN    
Sbjct: 269 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN---- 324

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                      V+SW++MI+ Y   G    AL++F  M   G+ 
Sbjct: 325 ---------------------------VISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 357

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T + LL       +    +Q+H      G+ L N+++ N L+  Y     L  A+G
Sbjct: 358 PDKITLASLLYACINCRNLTQVRQVHAQASVHGM-LQNLIVANKLVHFYSYYRALDDAYG 416

Query: 202 VFLNMEELDIISWNSLISG---------CFNS-------------------GYGELALDQ 233
           +F  M   D +SW+ ++ G         CF +                   G    +L  
Sbjct: 417 LFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVL 476

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  MR  G  PD+  +  V+ AC KL  + K + +     +  F  + I+ +A ID+ +K
Sbjct: 477 FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 536

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  +E +  +F++++  +    + MI+ YG +G G  AL+LF +MLR  I P + TL  +
Sbjct: 537 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 596

Query: 354 LSSIPIPP-VEHGSQFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           L +      VE G +F S+  +     ++    + ++++  + G +D + ++
Sbjct: 597 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKL 648



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 144/301 (47%), Gaps = 24/301 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C++ ++    + +H      G   +  + N+ +  YS +   DD   LFD +  
Sbjct: 364 ASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCV 423

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SW++ + G  K  +       F E+        N  +     CG ++ +L +F KM
Sbjct: 424 RDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLP---FCGNANESLVLFDKM 480

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + +GV P      + + TV  AC         + I   + R    L +V+LG ++IDM+ 
Sbjct: 481 REEGVVPD----KVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL-DVILGTAMIDMHA 535

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  +F  MEE ++ISW+++I+     G G  ALD F  M  SG  P++ T+  
Sbjct: 536 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVS 595

Query: 252 VINACTKLRNLDKGKQVFAL-----SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           ++ AC+    +++G + F+L     SV+      + V    +DL  +  RL+++++L E 
Sbjct: 596 LLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCV----VDLLGRAGRLDEALKLIES 651

Query: 307 L 307
           +
Sbjct: 652 M 652



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 133/280 (47%), Gaps = 28/280 (10%)

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I+A    RNL + +QV A +   G L N +V +  I  +S    L+D+  LF+ +   D 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMA 372
              +VM+  + + G        F+ ++R   RP  +TL  V+ +                
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA-------------CRD 191

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K+       +  +L++MY K   I+ +  +F K+ +RDLV+W  ++ G  + G+A E+L
Sbjct: 192 LKN-------LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESL 244

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV---FSAMKEEYGVMPGEEHYACI 489
            +FE++ EEG+ PD++ +  V+ AC   G + K  ++       K +  V+ G      +
Sbjct: 245 VLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAM 300

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ID+  + G +  A +I   M  +   S W +++ A   +G
Sbjct: 301 IDMYAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHG 339


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/542 (31%), Positives = 288/542 (53%), Gaps = 11/542 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L  A +VFD   E DVVSWN+M+  YA  G+   A  +F++M  +G+ PS  T     +
Sbjct: 275 HLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNAST 334

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
             SS   G+ IHG  +  GL   ++VLGN+L+DMY + G    A  +F  +   + +SWN
Sbjct: 335 GCSSLRFGRMIHGCALEKGLD-RDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWN 392

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYT----ISIVINACTKLRNLDKGKQVFAL 271
           ++I+G    G  + A++ F  M+  G +P   T    +  V +   + R + +G+++ + 
Sbjct: 393 TMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR 452

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ---LDRWDYAVINVMISTYGRYGFG 328
            V  G+ S   + +A + +++ C  ++++   F++    DR D    N +IS+  ++G G
Sbjct: 453 IVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHG 512

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + AL  F+ M    + P + T   VL +      +  G   H     SG +SN  VA++L
Sbjct: 513 KRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATAL 572

Query: 388 MEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
             MY + GS++S+ EIF K+  +RD+V +N ++   +QNG A E L +F  + +EG  PD
Sbjct: 573 ASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPD 632

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
             +  +VL AC++GG  D+G  +F +M++ YG+ P E+HYAC +D+L +AG L  A ++ 
Sbjct: 633 EQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELI 692

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             M  +P   +W+++L A   Y DV         + +L       Y +L+   A  G+W+
Sbjct: 693 RCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWD 752

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V+  M   G+ K  G SWI IK+R++ F AG+  H   ++IY  L  L  E+ + G
Sbjct: 753 EAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIG 812

Query: 627 CV 628
            V
Sbjct: 813 YV 814



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 218/462 (47%), Gaps = 45/462 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         ++IH  + + G    + L N  L +Y   G     + LF+++    
Sbjct: 134 VLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM---- 189

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                       E D+VSWN+ I+  A  G    ALE+F +MQL
Sbjct: 190 ----------------------------ERDLVSWNAAIAANAQSGDLGIALELFQRMQL 221

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +GVRP+  T  I L+  ++    + IH  +  SGL    +V+  +L   Y +LG LY A 
Sbjct: 222 EGVRPARITLVIALTVCATIRQAQAIHFIVRESGLE-QTLVVSTALASAYARLGHLYQAK 280

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF    E D++SWN+++      G+   A   F  M + G SP + T+   +NA T   
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTL---VNASTGCS 337

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +L  G+ +   +++ G   + ++ +A +D++++C   E++  LF+++   +    N MI+
Sbjct: 338 SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIA 396

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-----HGSQFHSMAIKS 375
              + G  + A+ELFQ M  E + P   T   +L ++   P E      G + HS  +  
Sbjct: 397 GSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSC 456

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVK---LDKRDLVSWNTIMMGLTQNGRAAETL 432
           G+ S   + +++++MYA  G+ID +   F +    D+ D+VSWN I+  L+Q+G     L
Sbjct: 457 GYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRAL 516

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
             F  +   G+ P++IT  AVL AC     + +G +V   ++
Sbjct: 517 GFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLR 558



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 184/369 (49%), Gaps = 13/369 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  LR  LK ++L    +VF  +   D  SW ++I+ Y   G +  A+ MF +MQ +GVR
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVR 125

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               TF  +L   + +     G+ IH  ++ SGL     VL N L+ +YG  G +  A  
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLK-GKSVLANLLLHIYGSCGCVASAML 184

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  ME  D++SWN+ I+    SG   +AL+ F  M+  G  P   T+ I +  C  +R 
Sbjct: 185 LFEKMER-DLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ 243

Query: 262 LDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
                Q     V+   L  ++V+S A    +++   L  +  +F++    D    N M+ 
Sbjct: 244 ----AQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLG 299

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN 380
            Y ++G    A  LF  ML E I P++ TL  V +S     +  G   H  A++ G D +
Sbjct: 300 AYAQHGHMSEAALLFARMLHEGISPSKVTL--VNASTGCSSLRFGRMIHGCALEKGLDRD 357

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            V+ ++L++MY + GS + +  +F ++   + VSWNT++ G +Q G+    +++F+ +  
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQL 416

Query: 441 EGLPPDRIT 449
           EG+ P R T
Sbjct: 417 EGMAPVRAT 425



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 137/534 (25%), Positives = 228/534 (42%), Gaps = 95/534 (17%)

Query: 1   MSSYLKKAHVNKASLSYCS-----------QLIDRCLSFKSFDFAKTIHGHLFKLGFNAH 49
           + +Y +  H+++A+L +              L++      S  F + IHG   + G +  
Sbjct: 298 LGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRD 357

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
             LGN  LD+Y+R G+ ++   LF  IP  N +SW                         
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSW------------------------- 391

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-------ACH 162
                 N+MI+G +  G    A+E+F +MQL+G+ P   T+  LL  V+S          
Sbjct: 392 ------NTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAE 445

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN--MEEL-DIISWNSLIS 219
           G+++H  ++  G + S   +G +++ MY   G +  A   F    ME+  D++SWN++IS
Sbjct: 446 GRKLHSRIVSCGYA-SEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIIS 504

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
                G+G+ AL  F  M   G +P++ T   V++AC     L +G+ V       G  S
Sbjct: 505 SLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMES 564

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLM 338
           N  V +A   ++ +C  LE +  +FE++    D  + N MI+ Y + G    AL+LF  M
Sbjct: 565 NLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRM 624

Query: 339 LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            +E  RP E +   VLS+       HG                             G  D
Sbjct: 625 QQEGSRPDEQSFVSVLSACS-----HG-----------------------------GLAD 650

Query: 399 SSTEIFVKLDKRDLV--SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
              EIF  + +   +  S +     +   GRA    D  E +    + P  +    +L A
Sbjct: 651 EGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGA 710

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEH-YACIIDLLCQAGQLGKAIDITSTM 509
           C     VD+G L  S ++E   + PG+E  Y  + ++L  AG+  +A ++ + M
Sbjct: 711 CRKYRDVDRGRLANSMVRE---LDPGDESAYVVLSNILAGAGKWDEAAEVRTEM 761



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 192/408 (47%), Gaps = 29/408 (7%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G++IH  ++  GL      LGN L+ +Y K   L     VF  +E  D  SW ++I+  
Sbjct: 47  QGRRIHARIVSLGLEEE---LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAY 103

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
              G  + A+  F+ M+  G   D  T   V+ AC +L +L +G+ + A  V+ G    S
Sbjct: 104 TEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKS 163

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           ++ +  + ++  C  +  ++ LFE+++R D    N  I+   + G   +ALELFQ M  E
Sbjct: 164 VLANLLLHIYGSCGCVASAMLLFEKMER-DLVSWNAAIAANAQSGDLGIALELFQRMQLE 222

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            +RP   TL  V++      +      H +  +SG +   VV+++L   YA+ G +  + 
Sbjct: 223 GVRPARITL--VIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAK 280

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN--- 458
           E+F +  +RD+VSWN ++    Q+G  +E   +F  +L EG+ P ++TL      C+   
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLR 340

Query: 459 -----YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
                +G  ++KG+        +  ++ G      ++D+  + G   +A  +   +P   
Sbjct: 341 FGRMIHGCALEKGL--------DRDIVLGN----ALLDMYTRCGSPEEARHLFKRIPCNA 388

Query: 514 GCSIWESILRASAIYGDVKLTENVAERM-MDLQLPSPLPYSLLTQAYA 560
               W +++  S+  G +K    + +RM ++   P    Y  L +A A
Sbjct: 389 --VSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVA 434


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 168/549 (30%), Positives = 306/549 (55%), Gaps = 10/549 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTF 150
           +K   +  AL++FDE+ +PD+V+W+SM+SG+   G    A+E F +M +   V P   T 
Sbjct: 88  IKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTL 147

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             L+S    +S++  G+ +HG +IR G S +++ L NSL++ Y K      A  +F  + 
Sbjct: 148 ITLVSACTKLSNSRLGRCVHGFVIRRGFS-NDLSLVNSLLNCYAKSRAFKEAVNLFKMIA 206

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E D+ISW+++I+    +G    AL  F  M   G  P+  T+  V+ AC    +L++G++
Sbjct: 207 EKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRK 266

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
              L+++ G  +   V +A +D++ KC   E++  +F ++ R D      +IS +   G 
Sbjct: 267 THELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGM 326

Query: 328 GEVALELFQLMLRED-IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
              ++E F +ML E+  RP    +  VL S   +  +E    FHS  IK GFDSN  + +
Sbjct: 327 AHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGA 386

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LP 444
           SL+E+Y++ GS+ +++++F  +  +D V W +++ G   +G+  + L+ F  +++   + 
Sbjct: 387 SLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVK 446

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T  ++L AC++ G + +G+ +F  M  +Y + P  EHYA ++DLL + G L  AI+
Sbjct: 447 PNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIE 506

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           IT  MPF P   I  ++L A  I+ + ++ E VA+++ +L+      Y L++  Y ++G 
Sbjct: 507 ITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGE 566

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           WE + +++  +++ GI K    S I I+ +++ F A +  H   + +Y +L+ L   M++
Sbjct: 567 WENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMKE 626

Query: 625 --EGCVYLE 631
             E CVY E
Sbjct: 627 DLENCVYFE 635



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 218/421 (51%), Gaps = 8/421 (1%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMI 171
           WN+++   +     +  L  FS M     +P  FT  + L     +    +G+ IHG + 
Sbjct: 9   WNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVK 68

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
           +     S++ +G+SLI MY K G +  A  +F  +E+ DI++W+S++SG   +G    A+
Sbjct: 69  KDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAV 128

Query: 232 DQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           + F  M   S  +PD  T+  +++ACTKL N   G+ V    ++ GF ++  ++++ ++ 
Sbjct: 129 EFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNC 188

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           ++K    +++V LF+ +   D    + +I+ Y + G    AL +F  M+ +   P   T+
Sbjct: 189 YAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATV 248

Query: 351 SCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            CVL +      +E G + H +AI+ G ++   V+++L++MY K  S + +  +F ++ +
Sbjct: 249 LCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPR 308

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFE-ELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +D+VSW  ++ G T NG A  +++ F   LLE    PD I +  VL +C+  GF+++   
Sbjct: 309 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAK- 367

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F +   +YG        A +++L  + G LG A  + + +  +    +W S++    I+
Sbjct: 368 CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTV-VWTSLITGYGIH 426

Query: 529 G 529
           G
Sbjct: 427 G 427



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 192/422 (45%), Gaps = 42/422 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    + +HG + + GF+    L N  L+ Y++     + + LF  I +K+
Sbjct: 150 LVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKD 209

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ISW                               +++I+ Y   G +  AL +F+ M  
Sbjct: 210 VISW-------------------------------STVIACYVQNGAAAEALLVFNDMMD 238

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T   +L   ++A     G++ H   IR GL  + V +  +L+DMY K     
Sbjct: 239 DGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE-TEVKVSTALVDMYMKCFSPE 297

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVINAC 256
            A+ VF  +   D++SW +LISG   +G    ++++F  M     + PD   +  V+ +C
Sbjct: 298 EAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSC 357

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++L  L++ K   +  +K GF SN  + ++ ++L+S+C  L ++ ++F  +   D  V  
Sbjct: 358 SELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWT 417

Query: 317 VMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAI 373
            +I+ YG +G G  ALE F  M++  +++P E T   +LS+     + H     F  M  
Sbjct: 418 SLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVN 477

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAE 430
                 N    + L+++  + G +D++ EI  ++           ++G   + QNG  AE
Sbjct: 478 DYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAE 537

Query: 431 TL 432
           T+
Sbjct: 538 TV 539



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 139/264 (52%), Gaps = 3/264 (1%)

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M +  +  WN+L+         E  L  F  M      PD +T+ + + AC +LR ++ G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 266 KQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           + +     K V   S+  V S+ I ++ KC R+ +++R+F++L++ D    + M+S + +
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 325 YGFGEVALELFQLM-LREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAV 382
            G    A+E F+ M +  D+ P   TL  ++S+   +     G   H   I+ GF ++  
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLS 180

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + +SL+  YAK+ +   +  +F  + ++D++SW+T++    QNG AAE L VF +++++G
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDG 240

Query: 443 LPPDRITLAAVLLACNYGGFVDKG 466
             P+  T+  VL AC     +++G
Sbjct: 241 TEPNVATVLCVLQACAAAHDLEQG 264



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 41/194 (21%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C      + AK  H ++ K GF+++ ++G   ++LYSR G+  +  ++F+ I  K
Sbjct: 352 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 411

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM- 138
                                          D V W S+I+GY   G    ALE F+ M 
Sbjct: 412 -------------------------------DTVVWTSLITGYGIHGKGTKALETFNHMV 440

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS------LIDMYGK 192
           +   V+P+  TF   LS +S+  H   IH  +    L +++  L  +      L+D+ G+
Sbjct: 441 KSSEVKPNEVTF---LSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGR 497

Query: 193 LGVLYYAFGVFLNM 206
           +G L  A  +   M
Sbjct: 498 VGDLDTAIEITKRM 511



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + KR L  WNT++  L++  +  E L  F  +  +   PD  TL   L AC     V+ G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 467 MLVFSAMKEEYGVMPGEEHY--ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            ++   +K++  V  G + Y  + +I +  + G++ +A+ +   +  +P    W S++
Sbjct: 61  EMIHGFVKKD--VTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE-KPDIVTWSSMV 115


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 187/549 (34%), Positives = 296/549 (53%), Gaps = 20/549 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           KSD    A+K+FDE+ EPDVVSW   I      G +  A+E F   +L           +
Sbjct: 270 KSD----AIKMFDEMTEPDVVSWTERI------GAAYDAIEAFELFRLVLSGNMEVNEYM 319

Query: 153 LLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           L++ +S+         G+QI G   ++G  L   V  N+LI MYGK G +  A  +F  M
Sbjct: 320 LINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASV-NNALIFMYGKCGEMVAARHIFDEM 378

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D +SWNSLI+G   +G  + AL  F  MR     P++YT++ ++         ++  
Sbjct: 379 LCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAM 438

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ +  VK+GF+ +  +LS  I  + KCN + +S R++  + + +   +N M +T    G
Sbjct: 439 QIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAG 498

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL+LFQ   R        TLS VL +   +  +E+G   HSMA+KSG   +  V S
Sbjct: 499 CHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVES 558

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +++++Y K G++D + + F+ + K +LV+WN ++MG  Q+G   E  ++F ++LE G+ P
Sbjct: 559 AVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQP 618

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D IT   VL +C + G V++     S+M E +GV+P  EHYAC+IDL  + G L  A   
Sbjct: 619 DEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRT 678

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP  P   IW+ +L    I+G+V L E  A+++++LQ  +   Y LL+  YA  GRW
Sbjct: 679 IDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRW 738

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            A+ ++++VM+K  I K  G SWI ++  ++ F A +  H   ++IY+ L+ L  EM   
Sbjct: 739 NAVGKLRRVMKKKIICKEPGSSWIQVRGSVHYFFASDTSHPESKEIYMKLQRLYEEM--F 796

Query: 626 GCVYLECDK 634
              YLE D+
Sbjct: 797 ASPYLEQDR 805



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 217/417 (52%), Gaps = 20/417 (4%)

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S +   A +   + P PD VSWNS+ISGYA         ++F+ ++  G+ P  F+ S L
Sbjct: 68  SGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSL 127

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +         +  HG  ++ GL    VV G  L+D Y KLG +  A   F      D + 
Sbjct: 128 VKGCGVLEQNEVAHGVCLKMGLLNGFVVSG--LLDGYAKLGDVDSAEKCFKEFYIADSVV 185

Query: 214 WNSLISGCFNSGYGELALDQFYSMR--YSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           W +++ G   +G  E   + F  MR    G   +E++++ V+ A + +R   +G+QVF L
Sbjct: 186 WTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLTSVLGALSDVR---EGEQVFGL 242

Query: 272 SVKVGFLSN-SIVL-SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           SVK+G L   SI L +A ++++S+C    D++++F+++   D  V++        Y   E
Sbjct: 243 SVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPD--VVSWTERIGAAYDAIE 300

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A ELF+L+L  ++   E+ L  VLS++  P  ++ G Q   +  K+G+   A V ++L+
Sbjct: 301 -AFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALI 359

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MY K G + ++  IF ++   D VSWN+++ G  +NG   + L VF ++ +  L P++ 
Sbjct: 360 FMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKY 419

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII------DLLCQAGQL 499
           TLA++L       F ++ M + S +  + G +  +   +C+I      +++C++ ++
Sbjct: 420 TLASILEVAANSNFPEQAMQIHSYIV-KLGFIVDDSMLSCLITAYGKCNMICESKRV 475



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 236/537 (43%), Gaps = 61/537 (11%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ--LQGVRP 145
           L G  K  ++D+A K F E    D V W +M+ G+   G  +   E+F +M+    G+  
Sbjct: 159 LDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLEL 218

Query: 146 SGFTFSILLSTVSSACHGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLGVLYYAFGVFL 204
           + F+ + +L  +S    G+Q+ G  ++ GL    ++ L N+L++MY + G    A  +F 
Sbjct: 219 NEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFD 278

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLD 263
            M E D++SW   I     + Y  +   + + +  SG    +EY +  V++A  + + L 
Sbjct: 279 EMTEPDVVSWTERIG----AAYDAIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLK 334

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+Q+  L  K G+L  + V +A I ++ KC  +  +  +F+++   D    N +I+ Y 
Sbjct: 335 SGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYA 394

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVL-----SSIPIPPVEHGSQFHSMAIKSGFD 378
             G  + AL++F  M    ++P ++TL+ +L     S+ P    E   Q HS  +K GF 
Sbjct: 395 ENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFP----EQAMQIHSYIVKLGFI 450

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  + S L+  Y K   I  S  ++  + + +++  N +   L   G  A+ L +F+  
Sbjct: 451 VDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTG 510

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
                  D ITL+ VL AC     ++ G  + S M  + G+       + +ID+ C+ G 
Sbjct: 511 WRLHQEVDCITLSIVLKACGALTDLEYGRNIHS-MALKSGMSQDNFVESAVIDVYCKCGT 569

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           + +A                                   A+  M++   + + ++ +   
Sbjct: 570 VDEA-----------------------------------AKTFMNVSKNNLVAWNAMVMG 594

Query: 559 YAMRGRWEAIVRVKKVMRKNGINK--------VTGCSWIGIKNRIYTFNAGELQHHG 607
           YA  G +  +  +   M + GI          +  C   G+ N  +T+ +  L+ HG
Sbjct: 595 YAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHG 651



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 152/326 (46%), Gaps = 35/326 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + I G   K G+     + N  + +Y + G       +FDE+   + +SWN  + G   
Sbjct: 336 GRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAG--- 392

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                       YA  G    AL++FS+M+   ++P+ +T + +
Sbjct: 393 ----------------------------YAENGLMKQALKVFSQMRDYLLQPNKYTLASI 424

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   +++       QIH  +++ G  + + +L + LI  YGK  ++  +  V+ ++ +++
Sbjct: 425 LEVAANSNFPEQAMQIHSYIVKLGFIVDDSML-SCLITAYGKCNMICESKRVYSDISQIN 483

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++  N++ +   ++G    AL  F +        D  T+SIV+ AC  L +L+ G+ + +
Sbjct: 484 VLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHS 543

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           +++K G   ++ V SA ID++ KC  ++++ + F  + + +    N M+  Y ++G    
Sbjct: 544 MALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHE 603

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSS 356
             ELF  ML   I+P E T   VL+S
Sbjct: 604 VFELFNKMLELGIQPDEITYLGVLNS 629



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 178/394 (45%), Gaps = 17/394 (4%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           Q +   ++SG +L +  L + +++ +   G    A    L+    D +SWNSLISG    
Sbjct: 41  QSYALFLKSGFAL-DAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARF 99

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                  D F  +R SG SPDE+++S ++  C     L++ +    + +K+G L N  V+
Sbjct: 100 RQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGV---LEQNEVAHGVCLKMGLL-NGFVV 155

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM--LRED 342
           S  +D ++K   ++ + + F++    D  V   M+  +   G  E   E+F  M  L   
Sbjct: 156 SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLG 215

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVA--SSLMEMYAKTGSIDSS 400
           +   EF+L+ VL +  +  V  G Q   +++K G      +   ++LM MY++ GS   +
Sbjct: 216 LELNEFSLTSVLGA--LSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDA 273

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F ++ + D+VSW T  +G   +  A E  ++F  +L   +  +   L  VL A    
Sbjct: 274 IKMFDEMTEPDVVSW-TERIGAAYD--AIEAFELFRLVLSGNMEVNEYMLINVLSAMREP 330

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             +  G  +   + ++ G +        +I +  + G++  A  I   M      S W S
Sbjct: 331 KLLKSGRQI-QGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVS-WNS 388

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           ++   A  G +K    V  +M D  L  P  Y+L
Sbjct: 389 LIAGYAENGLMKQALKVFSQMRDYLL-QPNKYTL 421



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 134/310 (43%), Gaps = 48/310 (15%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A  IH ++ KLGF                             I   + +S  I   G  K
Sbjct: 437 AMQIHSYIVKLGF-----------------------------IVDDSMLSCLITAYG--K 465

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
            + +  + +V+ +I + +V+  N+M +     G    AL++F      G R       I 
Sbjct: 466 CNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQT----GWRLHQEVDCIT 521

Query: 154 LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           LS V  AC       +G+ IH   ++SG+S  N V  +++ID+Y K G +  A   F+N+
Sbjct: 522 LSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFV-ESAVIDVYCKCGTVDEAAKTFMNV 580

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + ++++WN+++ G    G      + F  M   G  PDE T   V+N+C     +++  
Sbjct: 581 SKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAH 640

Query: 267 QVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVINVMIS---T 321
              +  +++ G +      +  IDLF +   LED+ R  +Q+    D  +  +++S    
Sbjct: 641 TYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNI 700

Query: 322 YGRYGFGEVA 331
           +G    GEVA
Sbjct: 701 HGNVDLGEVA 710



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 49/263 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +    ++ + IH    K G +   ++ +  +D+Y + GT D+  + F  + +
Sbjct: 523 SIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSK 582

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N ++W                               N+M+ GYA  G      E+F+KM
Sbjct: 583 NNLVAW-------------------------------NAMVMGYAQHGCYHEVFELFNKM 611

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIH--GSMIRSGLSLSNVVLG----NSLIDMYGK 192
              G++P   T+   L  ++S CH   ++   + + S L L  VV        +ID++G+
Sbjct: 612 LELGIQPDEITY---LGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGR 668

Query: 193 LGVLYYAFGVFLNMEEL-DIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSP---- 244
           +G+L  A      M  + D   W  L+SGC    N   GE+A  +   ++    S     
Sbjct: 669 VGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLL 728

Query: 245 -DEYTISIVINACTKLRNLDKGK 266
            + Y  +   NA  KLR + K K
Sbjct: 729 SNLYASAGRWNAVGKLRRVMKKK 751



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           AL+  + ++ + + P     S   +S+  PP+    Q +++ +KSGF  +A ++S ++  
Sbjct: 10  ALQSIKTLVLKRLYPQALRAS---ASLLHPPLT--DQSYALFLKSGFALDAFLSSFIVNR 64

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           +A +G    +    +     D VSWN+++ G  +  +     D+F  L   GL PD  +L
Sbjct: 65  FAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSL 124

Query: 451 AAVLLAC 457
           ++++  C
Sbjct: 125 SSLVKGC 131


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/539 (30%), Positives = 299/539 (55%), Gaps = 13/539 (2%)

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
           P  N I+ N  +    K      A KVFD +PE +VVSW++++SG+   G    +L +FS
Sbjct: 408 PWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFS 467

Query: 137 KMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M  QG+ P+ FTFS  L     +++   G QIHG  ++ G  +  V +GNSL+DMY K 
Sbjct: 468 EMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM-VEVGNSLVDMYSKC 526

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISI 251
           G +  A  VF  + +  +ISWN++I+G  ++GYG  ALD F  M+ +     PDE+T++ 
Sbjct: 527 GRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTS 586

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFL--SNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           ++ AC+    +  GKQ+    V+ GF   S++ +  + +DL+ KC  L  + + F+Q+  
Sbjct: 587 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKE 646

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
                 + +I  Y + G    A+ LF+ +   + +   F LS ++        +  G Q 
Sbjct: 647 KTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM 706

Query: 369 HSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
            ++A+K  SG +++  V +S+++MY K G +D + + F ++  +D++SW  ++ G  ++G
Sbjct: 707 QALAVKLPSGLETS--VLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHG 764

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              +++ +F E+L   + PD +   AVL AC++ G + +G  +FS + E +G+ P  EHY
Sbjct: 765 LGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHY 824

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC++DLL +AG+L +A  +  TMP +P   IW+++L    ++GD++L + V + ++ +  
Sbjct: 825 ACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDA 884

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
            +P  Y +++  Y   G W      +++    G+ K  G SW+ I+  ++ F +GE  H
Sbjct: 885 KNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSH 943



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 47/346 (13%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IHG   K+GF     +GN  +D+YS+ G  ++  ++F  I  ++ ISW            
Sbjct: 500 IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISW------------ 547

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV--RPSGFTFSILL 154
                              N+MI+G+   GY   AL+ F  MQ   +  RP  FT + LL
Sbjct: 548 -------------------NAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 155 STVSSAC---HGKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
              SS      GKQIHG ++RSG    S+  +  SL+D+Y K G L+ A   F  ++E  
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +ISW+SLI G    G    A+  F  ++      D + +S +I        L +GKQ+ A
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L+VK+     + VL++ +D++ KC  ++++ + F ++   D     V+I+ YG++G G+ 
Sbjct: 709 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 768

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSG 376
           ++ +F  MLR +I P E     VLS+            HS  IK G
Sbjct: 769 SVRIFYEMLRHNIEPDEVCYLAVLSACS----------HSGMIKEG 804



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 150/340 (44%), Gaps = 40/340 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN--AHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + L+  C S       K IHG L + GF+  +   +    +DLY + G      + FD+I
Sbjct: 585 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI 644

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            +K  IS                               W+S+I GYA  G    A+ +F 
Sbjct: 645 KEKTMIS-------------------------------WSSLILGYAQEGEFVEAMGLFK 673

Query: 137 KMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           ++Q    +   F  S ++   +       GKQ+    ++    L   VL NS++DMY K 
Sbjct: 674 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVL-NSVVDMYLKC 732

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G++  A   F  M+  D+ISW  +I+G    G G+ ++  FY M      PDE     V+
Sbjct: 733 GLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVL 792

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFEQLD-RWD 311
           +AC+    + +G+++F+  ++   +   +   A  +DL  +  RL+++  L + +  + +
Sbjct: 793 SACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPN 852

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTL 350
             +   ++S    +G  E+  E+ +++LR D + P  + +
Sbjct: 853 VGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVM 892


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 162/516 (31%), Positives = 292/516 (56%), Gaps = 13/516 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST--- 156
           A KVFD +PE +VVSW++++SG+   G    +L +FS+M  QG+ P+ FTFS  L     
Sbjct: 60  AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 119

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +++   G QIHG  ++ G  +  V +GNSL+DMY K G +  A  VF  + +  +ISWN+
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMM-VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNA 178

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           +I+G  ++GYG  ALD F  M+ +     PDE+T++ ++ AC+    +  GKQ+    V+
Sbjct: 179 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 238

Query: 275 VGFL--SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            GF   S++ +  + +DL+ KC  L  + + F+Q+        + +I  Y + G    A+
Sbjct: 239 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 298

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK--SGFDSNAVVASSLME 389
            LF+ +   + +   F LS ++        +  G Q  ++A+K  SG +++  V +S+++
Sbjct: 299 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETS--VLNSVVD 356

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY K G +D + + F ++  +D++SW  ++ G  ++G   +++ +F E+L   + PD + 
Sbjct: 357 MYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVC 416

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             AVL AC++ G + +G  +FS + E +G+ P  EHYAC++DLL +AG+L +A  +  TM
Sbjct: 417 YLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM 476

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +P   IW+++L    ++GD++L + V + ++ +   +P  Y +++  Y   G W    
Sbjct: 477 PIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQG 536

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             +++    G+ K  G SW+ I+  ++ F +GE  H
Sbjct: 537 NARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSH 572



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 172/312 (55%), Gaps = 11/312 (3%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H  +++SG  L N++  N LIDMY K      A+ VF +M E +++SW++L+SG 
Sbjct: 24  QGGQVHCYLLKSGSGL-NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGH 82

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G  + +L  F  M   G  P+E+T S  + AC  L  L+KG Q+    +K+GF    
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V ++ +D++SKC R+ ++ ++F ++        N MI+ +   G+G  AL+ F +M   
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202

Query: 342 DI--RPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFD--SNAVVASSLMEMYAKTGS 396
           +I  RP EFTL+ +L +      +  G Q H   ++SGF   S+A +  SL+++Y K G 
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           + S+ + F ++ ++ ++SW+++++G  Q G   E + +F+ L E     D   L++++  
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII-- 320

Query: 457 CNYGGFVDKGML 468
              G F D  +L
Sbjct: 321 ---GVFADFALL 329



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 191/404 (47%), Gaps = 40/404 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +    IHG   K+GF     +GN  +D+YS+ G  ++  ++F  I  ++ ISW
Sbjct: 117 CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISW 176

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV- 143
           N                               +MI+G+   GY   AL+ F  MQ   + 
Sbjct: 177 N-------------------------------AMIAGFVHAGYGSKALDTFGMMQEANIK 205

Query: 144 -RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLYY 198
            RP  FT + LL   SS      GKQIHG ++RSG    S+  +  SL+D+Y K G L+ 
Sbjct: 206 ERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFS 265

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A   F  ++E  +ISW+SLI G    G    A+  F  ++      D + +S +I     
Sbjct: 266 ARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFAD 325

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
              L +GKQ+ AL+VK+     + VL++ +D++ KC  ++++ + F ++   D     V+
Sbjct: 326 FALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVV 385

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS-G 376
           I+ YG++G G+ ++ +F  MLR +I P E     VLS+      ++ G +  S  +++ G
Sbjct: 386 ITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHG 445

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                   + ++++  + G +  +  +   +  K ++  W T++
Sbjct: 446 IKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLL 489



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++  CT+    D+G QV    +K G   N I  +  ID++ KC     + ++F+ +   +
Sbjct: 12  ILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERN 71

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               + ++S +   G  + +L LF  M R+ I P EFT S  L +   +  +E G Q H 
Sbjct: 72  VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +K GF+    V +SL++MY+K G I+ + ++F ++  R L+SWN ++ G    G  ++
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSK 191

Query: 431 TLDVFEELLEEGLP--PDRITLAAVLLACNYGGFVDKG 466
            LD F  + E  +   PD  TL ++L AC+  G +  G
Sbjct: 192 ALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAG 229



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 149/340 (43%), Gaps = 40/340 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN--AHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + L+  C S       K IHG L + GF+  +   +    +DLY + G      + FD+I
Sbjct: 214 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQI 273

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            +K  ISW                               +S+I GYA  G    A+ +F 
Sbjct: 274 KEKTMISW-------------------------------SSLILGYAQEGEFVEAMGLFK 302

Query: 137 KMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           ++Q    +   F  S ++   +       GKQ+    ++    L   VL NS++DMY K 
Sbjct: 303 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVL-NSVVDMYLKC 361

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G++  A   F  M+  D+ISW  +I+G    G G+ ++  FY M      PDE     V+
Sbjct: 362 GLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVL 421

Query: 254 NACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWD 311
           +AC+    + +G+++F+  ++  G        +  +DL  +  RL+++  L + +  + +
Sbjct: 422 SACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPN 481

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTL 350
             +   ++S    +G  E+  E+ +++LR D + P  + +
Sbjct: 482 VGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVM 521



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 58/107 (54%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           + G Q H   +KSG   N + ++ L++MY K      + ++F  + +R++VSW+ +M G 
Sbjct: 23  DQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGH 82

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
             NG    +L +F E+  +G+ P+  T +  L AC     ++KG+ +
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 129


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/506 (31%), Positives = 283/506 (55%), Gaps = 7/506 (1%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVSSAC 161
           VFD++   ++  WN+++S Y      + A+ +FS++  +   +P  FT   ++   +   
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 222

Query: 162 H---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG-VFLNMEELDIISWNSL 217
               G+ IHG   +  L +S+V +GN+LI MYGK G++  A   VF  M+   + SWN+L
Sbjct: 223 DLGLGQIIHGMATKMDL-VSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNAL 281

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           + G   +     ALD +  M  SG  PD +TI  ++ AC+++++L  G+++   +++ G 
Sbjct: 282 LCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL 341

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +  +  + + L+  C +   +  LF+ ++       NVMI+ Y + G  + A+ LF+ 
Sbjct: 342 AVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQ 401

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           ML + I+P E  + CV  +   +  +  G + H  A+K+    +  V+SS+++MYAK G 
Sbjct: 402 MLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGC 461

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           I  S  IF +L ++D+ SWN I+ G   +GR  E L++FE++L  GL PD  T   +L+A
Sbjct: 462 IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 521

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G V+ G+  F+ M   + + P  EHY C++D+L +AG++  A+ +   MP  P   
Sbjct: 522 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 581

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           IW S+L +  I+G++ L E VA ++++L+   P  Y L++  +A  G+W+ + RV+  M+
Sbjct: 582 IWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMK 641

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGE 602
             G+ K  GCSWI +  +++ F  G+
Sbjct: 642 DIGLQKDAGCSWIEVGGKVHNFLIGD 667



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 210/443 (47%), Gaps = 38/443 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C         + IHG   K+   +  ++GN  + +Y + G  ++ ++         
Sbjct: 214 VIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK--------- 264

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                +VFD +    V SWN+++ GYA       AL+++ +M  
Sbjct: 265 ---------------------RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD 303

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P  FT   LL   S + S  +G++IHG  +R+GL++ +  +G SL+ +Y   G  +
Sbjct: 304 SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV-DPFIGISLLSLYICCGKPF 362

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  ME   ++SWN +I+G   +G  + A++ F  M   G  P E  I  V  AC+
Sbjct: 363 AAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACS 422

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +L  L  GK++   ++K     +  V S+ ID+++K   +  S R+F++L   D A  NV
Sbjct: 423 QLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNV 482

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKS 375
           +I+ YG +G G+ ALELF+ MLR  ++P +FT + +L +      VE G + F+ M    
Sbjct: 483 IIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLH 542

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDV 434
             +      + +++M  + G ID +  +  ++    D   W++++     +G       V
Sbjct: 543 NIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKV 602

Query: 435 FEELLE-EGLPPDRITLAAVLLA 456
             +LLE E   P+   L + L A
Sbjct: 603 ANKLLELEPEKPENYVLISNLFA 625



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 197/414 (47%), Gaps = 24/414 (5%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  +  S    ++ VL   +I MY   G    +  VF  +   ++  WN+++S   
Sbjct: 124 GRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT 183

Query: 223 NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +   E A+  F  +   + + PD +T+  VI AC  L +L  G+ +  ++ K+  +S+ 
Sbjct: 184 RNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDV 243

Query: 282 IVLSATIDLFSKCNRLEDSV-RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
            V +A I ++ KC  +E++V R+F+ +D    +  N ++  Y +      AL+L+  M  
Sbjct: 244 FVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTD 303

Query: 341 EDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
             + P  FT+ S +L+   +  + +G + H  A+++G   +  +  SL+ +Y   G   +
Sbjct: 304 SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA 363

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           +  +F  ++ R LVSWN ++ G +QNG   E +++F ++L +G+ P  I +  V  AC+ 
Sbjct: 364 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 423

Query: 460 GGFVDKGMLVFSAMK--EEYGVMPGEEHY-------ACIIDLLCQAGQLGKAIDITSTMP 510
                      SA++  +E      + H        + IID+  + G +G +  I   + 
Sbjct: 424 ----------LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR 473

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
            +   + W  I+    I+G  K    + E+M+ L L P    ++ +  A +  G
Sbjct: 474 -EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAG 526



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 118/215 (54%), Gaps = 4/215 (1%)

Query: 248 TISIVINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            + +++ AC + ++++ G+++  + S    F ++ ++ +  I ++S C    DS  +F++
Sbjct: 107 AMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDK 166

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           L R +    N ++S Y R    E A+ +F +L+   + +P  FTL CV+ +   +  +  
Sbjct: 167 LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 226

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE-IFVKLDKRDLVSWNTIMMGLT 423
           G   H MA K    S+  V ++L+ MY K G ++ + + +F  +D + + SWN ++ G  
Sbjct: 227 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           QN    + LD++ ++ + GL PD  T+ ++LLAC+
Sbjct: 287 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 362 VEHGSQFHSM-AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
           +E G + H M +  + F ++ V+ + ++ MY+  GS   S  +F KL +++L  WN I+ 
Sbjct: 121 IEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVS 180

Query: 421 GLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGM 467
             T+N    + + +F EL+      PD  TL  V+ AC   G +D G+
Sbjct: 181 AYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGL 226


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 177/582 (30%), Positives = 294/582 (50%), Gaps = 71/582 (12%)

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVR-PSGFTFSILLST--VSSACHGKQIHGSMIR 172
            S++S +A+      A+     +  QG+R P     S+L       S   GK IH  +  
Sbjct: 15  RSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKI 74

Query: 173 SGLSLSNVVLGNSLIDMYGKLG-------------------------------VLYYAFG 201
           +G    N +L N LI MY K G                               +L  A  
Sbjct: 75  TGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARV 134

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M E D++SWN+++ G    G    AL  F  +R SG   +E++ + ++ AC K R 
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQ 194

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L   +Q     +  GFLSN ++  + ID ++KC ++E + R F+++   D  +   +IS 
Sbjct: 195 LQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISG 254

Query: 322 YG-------------------------------RYGFGEVALELFQLMLREDIRPTEFTL 350
           Y                                R G G++AL+LF+ M+   ++P +FT 
Sbjct: 255 YAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTF 314

Query: 351 S-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLD 408
           S C+ +S  I  + HG Q H   I++    NA+V SSL++MY+K+GS+++S  +F +  D
Sbjct: 315 SSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYD 374

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           K+D V WNT++  L Q+G   + L + +++++  + P+R TL  +L AC++ G V++G+ 
Sbjct: 375 KQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVR 434

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F +M  ++G++P +EHYAC+IDLL +AG   + +     MPF+P   IW +IL    I+
Sbjct: 435 WFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIH 494

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           G+ +L +  AE ++ L   S  PY LL+  YA  G+WE + +++ +M+K  +NK    SW
Sbjct: 495 GNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKAVSW 554

Query: 589 IGIKNRIYTFNAGELQHHGG----QKIYLVLRLLTWEMEDEG 626
           I I+N++  F   +  H       ++IY +L  L   ME+E 
Sbjct: 555 IEIENKVKAFTVSDGSHAHAHARKEEIYFILHNLAALMEEEA 596



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 223/464 (48%), Gaps = 46/464 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           + L+ +C   KS    K IH HL   GF   +T L N  + +Y + G   D  ++FD++ 
Sbjct: 50  ASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMH 109

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +N  SWN  + G +KS  L  A  VFD +PE DVVSWN+M+ GYA  G    AL  F +
Sbjct: 110 LRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKE 169

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDM----- 189
           ++  G++ + F+F+ LL+    +      +Q HG ++ +G  LSNVVL  S+ID      
Sbjct: 170 LRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGF-LSNVVLSCSIIDAYAKCG 228

Query: 190 --------------------------YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
                                     Y KLG +  A  +F  M E + +SW +LI+G   
Sbjct: 229 QMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVR 288

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G G+LALD F  M      P+++T S  + A   + +L  GKQ+    ++     N+IV
Sbjct: 289 QGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIV 348

Query: 284 LSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
            S+ ID++SK   LE S R+F    D+ D  + N MIS   ++G G  AL++   M++  
Sbjct: 349 TSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFR 408

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           + P   TL  +L++      VE G + F SM ++ G   +    + L+++  + G     
Sbjct: 409 VHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK-- 466

Query: 401 TEIFVKLDKR----DLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            E+  K+++     D   WN I+     +G         EEL++
Sbjct: 467 -ELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIK 509



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+  +     +  HG +   GF ++  L    +D Y++ G  +   + FDE+  K+
Sbjct: 185 LLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
              W   + G  K  +++ A K+F E+PE + VSW ++I+GY   G  D AL++F KM  
Sbjct: 245 IHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIA 304

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V+P  FTFS  L   ++++S  HGKQIHG MIR+ +   N ++ +SLIDMY K G L 
Sbjct: 305 MRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVR-PNAIVTSSLIDMYSKSGSLE 363

Query: 198 YAFGVF-LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            +  VF +  ++ D + WN++IS     G G  AL     M      P+  T+ +++NAC
Sbjct: 364 ASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNAC 423

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAV 314
           +    +++G + F +++V+ G + +    +  IDL  +    ++ +   E++    D  +
Sbjct: 424 SHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHI 483

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            N ++     +G  E+  +  + +++ D  P       +LSSI
Sbjct: 484 WNAILGVCRIHGNEELGKKAAEELIKLD--PESSAPYILLSSI 524


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 187/623 (30%), Positives = 315/623 (50%), Gaps = 39/623 (6%)

Query: 10   VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
            VN+  L+   +L+   ++  +   A  +H    KLG + + ++G+  +D YS  G   D 
Sbjct: 529  VNQFVLTTVLKLV---VAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSD- 584

Query: 70   LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                          A +VFD I   D V+W +M+S Y+     +
Sbjct: 585  ------------------------------ARRVFDGIVGKDAVAWTAMVSCYSENDCPE 614

Query: 130  YALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
              L++FSKM++   + + F  + +L     +SS   GK IH   +++       V G +L
Sbjct: 615  NTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYG-AL 673

Query: 187  IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
            +DMY K G +  A   F  +   D+I W+ +IS        E A + F  M  S  SP+E
Sbjct: 674  LDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNE 733

Query: 247  YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            +++S V+ AC  +  LD GKQ+   ++K+G  S   V +A IDL++KC+ +E S+ +F  
Sbjct: 734  FSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSS 793

Query: 307  LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
            L   +    N +I  Y + GFGE AL +F+ M    +  T+ T S VL +      + H 
Sbjct: 794  LRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHV 853

Query: 366  SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
             Q H +  KS F+S+ +V++SL++ YAK G I  + EIF  L + DLVSWN I+ G   +
Sbjct: 854  GQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVH 913

Query: 426  GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
            G+AA   ++F+ + +  +  + IT  A+L  C   G V +G+ +F +M+ ++G+ P  EH
Sbjct: 914  GQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEH 973

Query: 486  YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
            Y CI+ LL +AG+L  A++    +P  P   +W ++L +  ++ +V+L    AE++++++
Sbjct: 974  YTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIE 1033

Query: 546  LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                  Y LL+  Y+  G  + +   +K MR  G+ K  G SW+ IK  ++ F+ G   H
Sbjct: 1034 PQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDH 1093

Query: 606  HGGQKIYLVLRLLTWEMEDEGCV 628
               + I  +L  L  +   EG V
Sbjct: 1094 PCMRVINAMLEWLNLKAIREGYV 1116



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 253/531 (47%), Gaps = 44/531 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT--YLGNRCLDLYSRFGTSDDVLQLFDEI 76
           ++L+  C++       + +HGH+ + G  A    +  N  L++Y++ G            
Sbjct: 432 ARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGP----------- 480

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                                 +A +VFD +PE ++VS+ +++ G+A  G  + A  +F 
Sbjct: 481 --------------------FGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQ 520

Query: 137 KMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +++ +G   + F  + +L  V    +      +H    + G    N  +G++LID Y   
Sbjct: 521 RLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHD-RNAFVGSALIDAYSMC 579

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           GV+  A  VF  +   D ++W +++S    +   E  L  F  MR +    + + ++ V+
Sbjct: 580 GVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVL 639

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            A   L ++  GK + A SVK  + +   V  A +D+++KC  +ED+   FE +   D  
Sbjct: 640 RAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVI 699

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
           + ++MIS Y +    E A ELF  M+R  + P EF+LS VL +   +P ++ G Q H+ A
Sbjct: 700 LWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHA 759

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK G +S   V ++L+++YAK   ++SS EIF  L   + VSWNTI++G +++G     L
Sbjct: 760 IKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAAL 819

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            VF E+    +P  ++T ++VL AC     ++    V   + E+            +ID 
Sbjct: 820 SVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVH-CLIEKSTFNSDTIVSNSLIDS 878

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSI--WESILRASAIYGDVKLTENVAERM 541
             + G +  A +I  T+     C +  W +I+   A++G   + + + + M
Sbjct: 879 YAKCGCIRDAREIFETL---KECDLVSWNAIISGYAVHGQAAMAQELFDMM 926


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 177/628 (28%), Positives = 316/628 (50%), Gaps = 45/628 (7%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C   +  C    +    K +H HL K  F          +++YS+    D  L++F+
Sbjct: 29  LGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFN 88

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                N                              +V ++N++I+G+ +      AL +
Sbjct: 89  FPTHHN-----------------------------KNVFAYNALIAGFLANALPQRALAL 119

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +++M+  G+ P  FTF  ++        G    +IHG M + GL L +V +G++L++ Y 
Sbjct: 120 YNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLEL-DVFVGSALVNTYL 178

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +  A+ VF  +   D++ WN++++G    G  E AL  F  M  +G  P  YT++ 
Sbjct: 179 KFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTG 238

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++  + + + D G+ V     K+G+ S  +V +A ID++ KC  + D++ +FE +D  D
Sbjct: 239 VLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEID 298

Query: 312 YAVINVMISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
               N ++S + R G     L LF  M+    ++P   T++ VL +   +  + HG + H
Sbjct: 299 IFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIH 358

Query: 370 SMAIKSG---------FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
              + +G         FD + ++ ++LM+MYAK G++  +  +FV + ++D+ SWN ++ 
Sbjct: 359 GYMVVNGLAKEESHDVFD-DVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMIT 417

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G   +G   E LD+F  + +  + P+ I+   +L AC++ G V +G+   S M+ +YGV 
Sbjct: 418 GYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVS 477

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  EHY C+ID+LC+AGQL +A D+  TMPF+     W S+L A  ++ D  L E  A +
Sbjct: 478 PSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASK 537

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           +++L+      Y L++  Y + GR+E ++  +  M++  + K  GCSWI + N ++ F  
Sbjct: 538 VIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFIT 597

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           G+  H   + IY  L  LT  +++ G V
Sbjct: 598 GDRTHPQTEYIYAGLNSLTAVLQEHGYV 625


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 309/588 (52%), Gaps = 55/588 (9%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           LRG ++  NL  A  +FD++PE DVVSWN+M+SGYA  GY   A E+F +M  +    + 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NS 92

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +++ +L+      +G+      +    +   ++  N ++  Y K   L  A G+F  M 
Sbjct: 93  ISWNGMLAAYVQ--NGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP 150

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP--DEYTISIVINACTKLRNLDKG 265
           E D +SWN++ISG   +G      +   + R    SP  D +T + +++   +   LD+ 
Sbjct: 151 ERDEVSWNTMISGYAQNG------ELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEA 204

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR- 324
           ++VF    +     NS+  +A I  + +C R++ +  LFE +   + +  N MI+ Y + 
Sbjct: 205 RRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQN 260

Query: 325 ------------------------------YGFGEVALELFQLMLREDIRPTEFTLSCVL 354
                                          G+GE AL LF  M R+  R    T +  L
Sbjct: 261 GDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTL 320

Query: 355 SS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           S+   I  +E G Q H   +K+G +S   V ++L+ MY K G+ID +  +F  ++++++V
Sbjct: 321 STCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVV 380

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SWNT++ G  ++G   E L +FE + + G+ PD +T+  VL AC++ G VDKG   F +M
Sbjct: 381 SWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSM 440

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            ++YG+    +HY C+IDLL +AG+L  A ++   MPF+P  + W ++L AS I+G+ +L
Sbjct: 441 TQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTEL 500

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E  A+ + +++  +   Y LL+  YA  GRW  + R++  MR  G+ KV G SW+ ++N
Sbjct: 501 GEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 560

Query: 594 RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL---DVE 638
           +I+TF  G+  H    +IY  L  L  +M+ EG  Y+   KL   DVE
Sbjct: 561 KIHTFTVGDSVHPERDRIYTFLEELDLKMKKEG--YVSSTKLVLHDVE 606



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 188/391 (48%), Gaps = 46/391 (11%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +  Y++ G   +  +LF+E P ++  +W   + G +++  LD A +VFD +PE + V
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 217

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS 173
           SWN++I+GY  C   D A E+F  M  Q                                
Sbjct: 218 SWNAIIAGYVQCKRMDQARELFEAMPCQ-------------------------------- 245

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
                NV   N++I  Y + G +  A   F  M + D ISW ++I+G   SGYGE AL  
Sbjct: 246 -----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 300

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M+  G   +  T +  ++ C ++  L+ GKQV    VK G  S   V +A + ++ K
Sbjct: 301 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 360

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  ++D+  +FE ++  +    N MI+ Y R+GFG+ AL LF+ M +  I P + T+  V
Sbjct: 361 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGV 420

Query: 354 LSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KR 410
           LS+      V+ G++ F+SM    G  +N+   + ++++  + G +D +  +   +  + 
Sbjct: 421 LSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP 480

Query: 411 DLVSWNTIM-----MGLTQNGRAAETLDVFE 436
           D  +W  ++      G T+ G  A  + +FE
Sbjct: 481 DAATWGALLGASRIHGNTELGEKAAKM-IFE 510



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 38/220 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K +HG + K G  +  Y+GN  L +Y + G  DD   +F+ I +K  +SW
Sbjct: 323 CAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSW 382

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          N+MI+GYA  G+   AL +F  M+  G+ 
Sbjct: 383 -------------------------------NTMIAGYARHGFGKEALMLFESMKKTGIL 411

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +LS  S       G +   SM +     +N      +ID+ G+ G L  A  
Sbjct: 412 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 471

Query: 202 VFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSM 237
           +  NM  E D  +W +L+       N+  GE A    + M
Sbjct: 472 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM 511


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 297/555 (53%), Gaps = 38/555 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ I EP+++ WN+M  G+A       AL+++  M   G+ P+ +TF  LL
Sbjct: 39  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 98

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL--------------- 196
            + + +     G+QIHG +++ G  L ++ +  SLI MY + G L               
Sbjct: 99  KSCAKSKAFKEGQQIHGHVLKLGCDL-DLYVHTSLISMYVQNGRLEDAHKVFDESPHRDV 157

Query: 197 ---------YYAFGVFLNMEEL-------DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                    Y + G   N +++       D++SWN++ISG   +G  + AL+ F  M  +
Sbjct: 158 VSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 217

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T+  V++AC +  +++ G+QV +     GF SN  +++A IDL+SKC  LE +
Sbjct: 218 NVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETA 277

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             LFE L   D    N +I  Y      + AL LFQ MLR    P + T+  +L +   +
Sbjct: 278 CGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 337

Query: 360 PPVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  + L SWN 
Sbjct: 338 GAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 397

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +GRA  + D+F  + + G+ PD IT   +L AC++ G +D G  +F +M ++Y
Sbjct: 398 MIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDY 457

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL  +G   +A ++ +TM  +P   IW S+L+A  ++G+V+L E+ 
Sbjct: 458 KMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESF 517

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+ ++ ++  +P  Y LL+  YA  GRW  +   + ++   G+ KV GCS I I + ++ 
Sbjct: 518 AQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHE 577

Query: 598 FNAGELQHHGGQKIY 612
           F  G+  H   ++IY
Sbjct: 578 FIIGDKFHPRNREIY 592



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 182/345 (52%), Gaps = 14/345 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHGH+ KLG +   Y+    + +Y + G  +D  ++FDE P ++
Sbjct: 97  LLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRD 156

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   ++G      ++ A K+FDEIP  DVVSWN+MISGYA  G    ALE+F  M  
Sbjct: 157 VVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 216

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             VRP   T    + TV SAC        G+Q+H  +   G   SN+ + N+LID+Y K 
Sbjct: 217 TNVRPDEST----MVTVVSACAQSGSIELGRQVHSWIDDHGFG-SNLKIVNALIDLYSKC 271

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG +P++ T+  ++
Sbjct: 272 GELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 331

Query: 254 NACTKLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            AC  L  +D G+   V+      G  + S + ++ ID+++KC  +E + ++F  +    
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 391

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +  N MI  +  +G  + + ++F  M +  I P + T   +LS+
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSA 436



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 201/414 (48%), Gaps = 38/414 (9%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLID---MYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
           + IH  MI++GL  +N  L + LI+   +      L YA  VF  ++E +++ WN++  G
Sbjct: 7   RMIHAQMIKTGLHNTNYAL-SKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 65

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              S     AL  +  M   G  P+ YT   ++ +C K +   +G+Q+    +K+G   +
Sbjct: 66  HALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLD 125

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWD---YAVI---------------------- 315
             V ++ I ++ +  RLED+ ++F++    D   Y  +                      
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV 185

Query: 316 ------NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQF 368
                 N MIS Y   G  + ALELF+ M++ ++RP E T+  V+S+      +E G Q 
Sbjct: 186 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 245

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           HS     GF SN  + ++L+++Y+K G ++++  +F  L  +D++SWNT++ G T     
Sbjct: 246 HSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLY 305

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYA 487
            E L +F+E+L  G  P+ +T+ ++L AC + G +D G  +   + K   GV        
Sbjct: 306 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRT 365

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +ID+  + G +  A  + +++      S W +++   A++G    + ++  RM
Sbjct: 366 SLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFDIFSRM 418



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ I    + SWN+MI G+A  G +D + ++FS+M+  G+ P   TF  
Sbjct: 373 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVG 432

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM +       +     +ID+ G  G+   A  +   ME E
Sbjct: 433 LLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 492

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  EL 
Sbjct: 493 PDGVIWCSLLKACKMHGNVELG 514


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/594 (28%), Positives = 308/594 (51%), Gaps = 37/594 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH  + K  +  + ++ N  + +Y+RFG                                
Sbjct: 340 IHATVLKSSYYINVFVANALIAMYARFG-------------------------------K 368

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSILLS 155
           +  A  +F  + + D +SWNSM+SG+   G    AL+ + +M+  G +P      SI+ +
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 428

Query: 156 TVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +  S    +G QIH   +++GL  S++ +GNSL+DMY K   + Y   +F  M + D++S
Sbjct: 429 SARSGNTLNGMQIHAYAMKNGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 487

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W ++I+G   +G    AL+ F  ++  G   D   IS ++ AC+ L+ +   K++ +  +
Sbjct: 488 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYII 547

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + G LS+ ++ +  +D++ +C  ++ + R+FE ++  D      MIS Y   G    ALE
Sbjct: 548 RKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALE 606

Query: 334 LFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF LM    + P   +L S + ++  +  ++ G + H   I+ GF     +AS+L++MYA
Sbjct: 607 LFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYA 666

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           + G+++ S  +F  +  +DLV W +++     +G     +D+F  + +E + PD I   A
Sbjct: 667 RCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVA 726

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G +++G     +MK EY + P  EHY C++DLL +A  L +A      M  +
Sbjct: 727 VLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVE 786

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P   +W ++L A  I+ + +L E  A++++++   +P  Y L++  YA   RW+ +  V+
Sbjct: 787 PTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVR 846

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             M+ +G+ K  GCSWI + N+++TF A +  H    +IY  L  +T ++  EG
Sbjct: 847 MRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEG 900



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 243/456 (53%), Gaps = 9/456 (1%)

Query: 93  KSDNLDTALKVFDEIPEP-DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K ++L+ A ++FD +PE  DVVSWNSMIS Y+S G S  AL +F +MQ   + P+ +TF 
Sbjct: 263 KCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFV 322

Query: 152 ILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L     +   KQ   IH ++++S   + NV + N+LI MY + G +  A  +F NM++
Sbjct: 323 AALQACEDSSFIKQGMFIHATVLKSSYYI-NVFVANALIAMYARFGKMGEAANIFYNMDD 381

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D ISWNS++SG   +G    AL  ++ MR +G  PD   +  +I A  +  N   G Q+
Sbjct: 382 WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI 441

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A ++K G  S+  V ++ +D+++K   ++    +F+++   D      +I+ + + G  
Sbjct: 442 HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 501

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             ALELF+ +  E I      +S +L +   +  +    + HS  I+ G  S+ V+ + +
Sbjct: 502 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGI 560

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y + G++D +  +F  ++ +D+VSW +++     NG A E L++F  + E G+ PD 
Sbjct: 561 VDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDS 620

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           I+L ++L A      + KG  +   +  +  V+ G    + ++D+  + G L K+ ++ +
Sbjct: 621 ISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSL-ASTLVDMYARCGTLEKSRNVFN 679

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            +       +W S++ A  ++G  +   ++  RM D
Sbjct: 680 FIR-NKDLVLWTSMINAYGMHGCGRAAIDLFRRMED 714



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 228/465 (49%), Gaps = 49/465 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLG--FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           S +++ C S K+    + +H H+      FN+  +L  R + +Y + G   D        
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMITSNALFNS-VFLSTRLVFMYGKCGCLVD-------- 168

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                                  A K+FD +P   + +WN+MI  Y + G    +LE++ 
Sbjct: 169 -----------------------AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYR 205

Query: 137 KMQLQGVRPSGFTFSILLSTV----SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +M++ G+     TF  +L          C G ++HG  I+ G  +S V + NS++ MY K
Sbjct: 206 EMRVSGIPLDACTFPCILKACGLLKDRRC-GAEVHGLAIKEGY-VSIVFVANSIVGMYTK 263

Query: 193 LGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
              L  A  +F  M E+ D++SWNS+IS   ++G    AL  F  M+ +  +P+ YT   
Sbjct: 264 CNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVA 323

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            + AC     + +G  + A  +K  +  N  V +A I ++++  ++ ++  +F  +D WD
Sbjct: 324 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHS 370
               N M+S + + G    AL+ +  M     +P     +S + +S       +G Q H+
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            A+K+G DS+  V +SL++MYAK  S+     IF K+  +D+VSW TI+ G  QNG  + 
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 503

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
            L++F E+  EG+  D + ++++LLAC+       G+ + S++KE
Sbjct: 504 ALELFREVQLEGIDLDVMMISSILLACS-------GLKLISSVKE 541



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 10/340 (2%)

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           PS F+     S+V   C        G+Q+H  MI S    ++V L   L+ MYGK G L 
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M    I +WN++I     +G    +L+ +  MR SG   D  T   ++ AC 
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVIN 316
            L++   G +V  L++K G++S   V ++ + +++KCN L  + +LF+++ ++ D    N
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 287

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
            MIS Y   G    AL LF  M +  + P  +T    L +      ++ G   H+  +KS
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
            +  N  VA++L+ MYA+ G +  +  IF  +D  D +SWN+++ G  QNG   E L  +
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMK 474
            E+ + G  PD + + +++ A    G    GM + + AMK
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMK 447



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 38/211 (18%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHG L + GF     L +  +D+Y+R GT                            
Sbjct: 639 GKEIHGFLIRKGFVLEGSLASTLVDMYARCGT---------------------------- 670

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              L+ +  VF+ I   D+V W SMI+ Y   G    A+++F +M+ + + P    F  +
Sbjct: 671 ---LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 727

Query: 154 LSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-EL 209
           L   S +     G++   SM               L+D+ G+   L  A+     ME E 
Sbjct: 728 LYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEP 787

Query: 210 DIISWNSLISGC---FNSGYGELALDQFYSM 237
               W +L+  C    N   GE+A  +   M
Sbjct: 788 TAEVWCALLGACQIHSNKELGEIAAQKLLEM 818


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/541 (32%), Positives = 288/541 (53%), Gaps = 8/541 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR-PSGFTFS 151
           KS ++     +F+ I + D++SW S+I+G A  G    AL++F +M  +GV  P+ F F 
Sbjct: 195 KSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFG 254

Query: 152 ILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +       V+S  +G+QIHG  ++  L   N   G SL DMY +   L  A  VF  +E
Sbjct: 255 SVFRACSVVVNSLEYGEQIHGVSVKYQLD-RNSYAGCSLSDMYARCNELDSARKVFYRIE 313

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D++SWNSLI+     G    A+  F  MR SG  PD  T+  ++ AC     L +G+ 
Sbjct: 314 SPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRS 373

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           + +  VK+G   + IV ++ + ++++C     ++ +F +    D    N +++   ++  
Sbjct: 374 IHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQH 433

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            E   +LF L+ R        +L+ VLS S  +   E   Q H+ A K G   +A++++ 
Sbjct: 434 LEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNG 493

Query: 387 LMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           L++ YAK GS+D + ++F +    RD+ SW+++++G  Q G A E LD+F  +   G+ P
Sbjct: 494 LIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKP 553

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + +T   VL AC+  G VD+G   +S MK EYG++P  EH +C++DLL +AG+L +A   
Sbjct: 554 NHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKF 613

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MPF+P   +W+++L AS  + DV + +  AE ++++       Y LL   YA  G W
Sbjct: 614 VDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNW 673

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
               R+KK MR +G+ K  G SWI +K  +  F   +  H    +IY +L ++  EM   
Sbjct: 674 NEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEIYTMLEVIGLEMVKA 733

Query: 626 G 626
           G
Sbjct: 734 G 734



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 240/538 (44%), Gaps = 58/538 (10%)

Query: 25  CLSFKSFDFAKTIHGHLF----KLGFNAH-TYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           C   +S    + +H HL     +  F AH T L N  + +Y R G  D            
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPD------------ 99

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                              +A  VFD + + + VSW ++I+ +A       A+ +FS M 
Sbjct: 100 -------------------SARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 140

Query: 140 LQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIR--SGLSLSNVVLGNSLIDMY 190
             G  P  F     L +   AC        G+Q+H   I+  SG   S++++ N+L+ MY
Sbjct: 141 RSGTMPDQFA----LGSAICACSELGDLGLGRQVHAQAIKWESG---SDLIVQNALVTMY 193

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTI 249
            K G +   F +F  + + D+ISW S+I+G    G    AL  F  M   G + P+E+  
Sbjct: 194 SKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHF 253

Query: 250 SIVINACTKLRN-LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
             V  AC+ + N L+ G+Q+  +SVK     NS    +  D++++CN L+ + ++F +++
Sbjct: 254 GSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIE 313

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQ 367
             D    N +I+ +   G    A+ LF  M    +RP   T+  +L + +    +  G  
Sbjct: 314 SPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRS 373

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS  +K G   + +V++SL+ MYA+     S+ ++F +   RD+V+WN+I+    Q+  
Sbjct: 374 IHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQH 433

Query: 428 AAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
             +   +F  LL   +P  DRI+L  VL A    G+ +    V  A   + G++      
Sbjct: 434 LEDVFKLF-SLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVH-AYAFKVGLVGDAMLS 491

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
             +ID   + G L  A  +   M        W S++   A +G  K   ++  RM +L
Sbjct: 492 NGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNL 549



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 39/293 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+ + +    ++IH +L KLG      + N  L +Y+R       + +F E   ++
Sbjct: 358 LLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRD 417

Query: 81  CISWNICLRGLLKSDNLDTALKVFD----EIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++WN  L   ++  +L+   K+F      +P  D +S N+++S  A  GY     EM  
Sbjct: 418 VVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGY----FEMV- 472

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                      KQ+H    + GL + + +L N LID Y K G L
Sbjct: 473 ---------------------------KQVHAYAFKVGL-VGDAMLSNGLIDTYAKCGSL 504

Query: 197 YYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  +F  M    D+ SW+SLI G    GY + ALD F  MR  G  P+  T   V+ A
Sbjct: 505 DDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTA 564

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+++  +D+G   ++ +  + G +      S  +DL ++  RL ++ +  +Q+
Sbjct: 565 CSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQM 617


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 304/545 (55%), Gaps = 19/545 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG---VRPSGFT 149
           K   +  ALKVF+E   PD V W SM++GY      + AL +FS+M +     + P    
Sbjct: 151 KCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDP---- 206

Query: 150 FSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
             + L +V SAC        G  +HG +IR      ++ L NSL+++Y K G    A  +
Sbjct: 207 --VTLVSVVSACAQLLNVKAGSCVHGLVIRREFD-GDLPLVNSLLNLYAKTGCEKIAANL 263

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M E D+ISW+++I+   N+     AL+ F+ M    + P+  T+   + AC   RNL
Sbjct: 264 FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNL 323

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           ++GK++  ++V  GF  +  V +A ID++ KC+  +++V LF++L + D      ++S Y
Sbjct: 324 EEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGY 383

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNA 381
            + G    ++ +F+ ML + I+P    +  +L+ S  +   +     H   ++SGF+SN 
Sbjct: 384 AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNV 443

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V +SL+E+Y+K GS+  + ++F  +  RD+V W++++     +GR  E L++F+++++ 
Sbjct: 444 FVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKN 503

Query: 442 G-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + P+ +T  ++L AC++ G V++G+ +F  M  +Y + P  EH+  ++DLL + GQLG
Sbjct: 504 STVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLG 563

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           KA+DI + MP   G  +W ++L A  I+ ++++ E  A+ +  L       Y LL+  YA
Sbjct: 564 KAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYA 623

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           + G+W+ +  ++  +++ G+ K+ G S + ++  +++F A +  H   QKIY +LR L  
Sbjct: 624 VDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEA 683

Query: 621 EMEDE 625
           +M  E
Sbjct: 684 QMGKE 688



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 245/468 (52%), Gaps = 2/468 (0%)

Query: 164  KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
            K+ H  +   GL   + +L    I MY     +  A  VF ++       WN +I G   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAI-MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 224  SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
             G    +L+ +  M   G  PD++     + +C  L +L +GK +    V  G  ++  V
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 284  LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
             +A +D+++KC  +E +  +F+++   D      MIS Y   G+    L  F LM    +
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 344  RPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P   + LS +L+   +  +  G  FHS  I++GF+ + +VA+++M+MY+K GS+D +  
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 403  IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
            +F +   +DLV W+ ++     +G   + +D+F+++++ G+ P  +T   VL AC++ G 
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 463  VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            +++G + F  M EE+ +     +YAC++DLL +AGQL +A+D+   MP +P  SIW S+L
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095

Query: 523  RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
             A  I+ ++ L E +A+ +  L       + LL+  YA + RW  + +V+K+M + G NK
Sbjct: 1096 GACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANK 1155

Query: 583  VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYL 630
            + G S +   N+++ F  G+  H   +K+Y  L  L   M+  G V L
Sbjct: 1156 IQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPL 1203



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 215/447 (48%), Gaps = 16/447 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ-LQGVRPSGFTFS 151
           K  +L  A KVFDE P P+V  WNS +  Y      +  L +F  M    G  P  FT  
Sbjct: 48  KCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIP 107

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           I L   +       GK IHG   ++    S++ +G++L+++Y K G +  A  VF   + 
Sbjct: 108 IALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQR 167

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
            D + W S+++G   +   E AL  F  M        D  T+  V++AC +L N+  G  
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSC 227

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           V  L ++  F  +  ++++ ++L++K    + +  LF ++   D    + MI+ Y     
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASS 386
              AL LF  M+ +   P   T+   L +  +   +E G + H +A+  GF+ +  V+++
Sbjct: 288 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTA 347

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MY K    D + ++F +L K+D+VSW  ++ G  QNG A +++ VF  +L +G+ PD
Sbjct: 348 LIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 407

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY----ACIIDLLCQAGQLGKA 502
            + +  +L A +  G   + + +       Y V  G        A +I+L  + G LG A
Sbjct: 408 AVAVVKILAASSELGIFQQALCLHG-----YVVRSGFNSNVFVGASLIELYSKCGSLGDA 462

Query: 503 IDITSTMPFQPGCSIWESILRASAIYG 529
           + +   M  +    IW S++ A  I+G
Sbjct: 463 VKLFKGMIVRD-VVIWSSMIAAYGIHG 488



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 191/373 (51%), Gaps = 36/373 (9%)

Query: 95   DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            + +D A  VF++IP P    WN MI G+A+ G    +LE++SKM  +G++P  F F   L
Sbjct: 766  NRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFAL 825

Query: 155  ST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             +   +S    GK IH  ++  G S +++ +  +L+DMY K G +  A  VF  M   D+
Sbjct: 826  KSCAGLSDLQRGKVIHQHLVCCGCS-NDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDL 884

Query: 212  ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            +SW S+ISG  ++GY    L  F  MR SG  P+  +I  V+ AC  L  L KG+   + 
Sbjct: 885  VSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSY 944

Query: 272  SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             ++ GF  + +V +A +D++SKC  L+ +  LF++    D    + MI++YG +G G  A
Sbjct: 945  VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 1004

Query: 332  LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            ++LF  M++  +RP+  T +CVLS+            HS  ++ G            +MY
Sbjct: 1005 IDLFDQMVKAGVRPSHVTFTCVLSACS----------HSGLLEEG------------KMY 1042

Query: 392  AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
             +       TE FV    R L ++  ++  L + G+ +E +D+ E +  E   PD     
Sbjct: 1043 FQL-----MTEEFVI--ARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE---PDASIWG 1092

Query: 452  AVLLACNYGGFVD 464
            ++L AC     +D
Sbjct: 1093 SLLGACRIHNNLD 1105



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 43/346 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S C+QL++             +HG + +  F+    L N  L+LY++ G       LF 
Sbjct: 213 VSACAQLLN-------VKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFS 265

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           ++P+K+ ISW                               ++MI+ YA+   ++ AL +
Sbjct: 266 KMPEKDVISW-------------------------------STMIACYANNEAANEALNL 294

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F +M  +   P+  T    L   + + +   GK+IH   +  G  L +  +  +LIDMY 
Sbjct: 295 FHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL-DFSVSTALIDMYM 353

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K      A  +F  + + D++SW +L+SG   +G    ++  F +M   G  PD   +  
Sbjct: 354 KCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVK 413

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ A ++L    +   +    V+ GF SN  V ++ I+L+SKC  L D+V+LF+ +   D
Sbjct: 414 ILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD 473

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSS 356
             + + MI+ YG +G G  ALE+F  M++   +RP   T   +LS+
Sbjct: 474 VVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSA 519



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 133/287 (46%), Gaps = 36/287 (12%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            C         K IH HL   G +   ++    +D+Y++ G                    
Sbjct: 828  CAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCG-------------------- 867

Query: 85   NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       +++ A  VFD++   D+VSW SMISGYA  GY+   L  F  M+  GV 
Sbjct: 868  -----------DIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 145  PSGFT-FSILLS--TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            P+  +  S+LL+   + +   G+  H  +I++G    ++++  +++DMY K G L  A  
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF-DILVATAIMDMYSKCGSLDLARC 975

Query: 202  VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            +F      D++ W+++I+     G+G  A+D F  M  +G  P   T + V++AC+    
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 262  LDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQL 307
            L++GK  F L  +   ++  +   +  +DL  +  +L ++V L E +
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENM 1082



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 151/331 (45%), Gaps = 16/331 (4%)

Query: 252 VINACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           +  AC   R++ +   QVF    K G L ++   +    L++KC  L+ + ++F++    
Sbjct: 10  LFQACNNGRSVSQLHSQVF----KTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHP 65

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
           +  + N  + +Y R    E  L LF LM+      P  FT+   L +   +  +E G   
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVI 125

Query: 369 HSMAIKSG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           H  A K+    S+  V S+L+E+Y+K G +  + ++F +  + D V W +++ G  QN  
Sbjct: 126 HGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNND 185

Query: 428 AAETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEY-GVMPGEE 484
             E L +F ++ + + +  D +TL +V+ AC     V  G  V    ++ E+ G +P   
Sbjct: 186 PEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP--- 242

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
               +++L  + G    A ++ S MP +   S W +++   A         N+   M++ 
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVIS-WSTMIACYANNEAANEALNLFHEMIEK 301

Query: 545 QL-PSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
           +  P+ +      QA A+    E   ++ K+
Sbjct: 302 RFEPNSVTVVSALQACAVSRNLEEGKKIHKI 332



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 93   KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
            K  +LD A  +FDE    D+V W++MI+ Y   G+   A+++F +M   GVRPS  TF+ 
Sbjct: 966  KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 1025

Query: 153  LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
            +LS  S +     GK     M    +    +     ++D+ G+ G L  A  +  NM  E
Sbjct: 1026 VLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE 1085

Query: 209  LDIISWNSLISGC 221
             D   W SL+  C
Sbjct: 1086 PDASIWGSLLGAC 1098


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 183/602 (30%), Positives = 305/602 (50%), Gaps = 45/602 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG + K+GF + T LGN  +D+Y                               +K   
Sbjct: 26  LHGAITKMGFGSDTMLGNNLIDMY-------------------------------VKCGE 54

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLS 155
           LD A +VF  + + +VVSW +++ G+   G +   L +  +M+      P+ +T S  L 
Sbjct: 55  LDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLK 114

Query: 156 T---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDI 211
               V     G  IHG  +R+G    +VV  +SL+ +Y K G +  A  VF        I
Sbjct: 115 ACCVVGDTAAGVGIHGLCVRAGYQEHDVV-ASSLVLVYSKGGRIGDARRVFDGAGLGSGI 173

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMR-YSG-YSPDEYTISIVINACTKLRNLDKGKQVF 269
            +WN+++SG  ++G+G  AL  F  MR + G + PDE+T + ++ AC+ L    +G QV 
Sbjct: 174 ATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVH 233

Query: 270 ALSVKVGF--LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           A     GF   SN+I+  A +D++ KC RL  ++++FE+L+R +      ++  + + G 
Sbjct: 234 AAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQ 293

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
              ALELF+   R   RP    LS V+  +     VE G Q H   IK    ++    +S
Sbjct: 294 VTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNS 353

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           +++MY K G  D +  +F ++   ++VSW T++ GL ++G   E + +FEE+   G+ PD
Sbjct: 354 IVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPD 413

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T  A+L AC++ G VD+    FS ++ +  V P  EHYAC++DLL +AG+L +A D+ 
Sbjct: 414 EVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLI 473

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
            TMP +P   +W+++L A  ++ DV +     + ++ +   +P+ Y  L+   A  G W 
Sbjct: 474 RTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWR 533

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG---ELQHHGGQKIYLVLRLLTWEME 623
              +V+  MR+ G+ K  GCSW+ +   ++ F  G   E  H     I  VLR +   M 
Sbjct: 534 ECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMR 593

Query: 624 DE 625
           ++
Sbjct: 594 EQ 595



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 5/230 (2%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           I+ ++ A  +  +L  G Q+     K+GF S++++ +  ID++ KC  L+ +  +F  + 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 309 RWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSS-IPIPPVEHGS 366
             +      ++  + R+G     L L  ++    +  P E+TLS  L +   +     G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
             H + +++G+  + VVASSL+ +Y+K G I  +  +F        + +WN ++ G    
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 426 GRAAETLDVFEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           G   + L VF E+   E    PD  T A++L AC+  G   +G  V +AM
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAM 236



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 37/257 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN--AHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + L+  C    +      +H  +   GF+  ++  L    +D+Y +       +Q+F+ +
Sbjct: 214 ASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERL 273

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            +KN I W                                +++ G+A  G    ALE+F 
Sbjct: 274 ERKNVIQW-------------------------------TAVVVGHAQEGQVTEALELFR 302

Query: 137 KMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +    G RP     S ++  ++       G+Q+H   I+     ++V  GNS++DMY K 
Sbjct: 303 RFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTG-TDVSAGNSIVDMYLKC 361

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G+   A  +F  M   +++SW ++++G    G G  A+  F  MR  G  PDE T   ++
Sbjct: 362 GLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALL 421

Query: 254 NACTKLRNLDKGKQVFA 270
           +AC+    +D+ ++ F+
Sbjct: 422 SACSHAGLVDECRRYFS 438



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H    K GF S+ ++ ++L++MY K G +D + E+F  +  R++VSW  +M+G  +
Sbjct: 23  GVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLR 82

Query: 425 NGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGM----LVFSAMKEEYGV 479
           +G A   L +  E+       P+  TL+A L AC   G    G+    L   A  +E+ V
Sbjct: 83  HGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDV 142

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG---DVKLTEN 536
           +      + ++ +  + G++G A  +        G + W +++   A  G   D  L   
Sbjct: 143 VA-----SSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFR 197

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
              R      P    ++ L +A +  G      +V   M  +G +  +
Sbjct: 198 EMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTAS 245



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 45/247 (18%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F   +  + +H +  K         GN  +D+Y + G  D+  ++F E+   N +SW   
Sbjct: 326 FALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTM 385

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QG 142
           + GL K      A+ +F+E+     EPD V++ +++S  +  G  D     FS ++  + 
Sbjct: 386 VNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRT 445

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           VRP    +         AC                        ++D+ G+ G L  A  +
Sbjct: 446 VRPKAEHY---------AC------------------------MVDLLGRAGELREARDL 472

Query: 203 FLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSPDEY-TISIVINACT 257
              M  E  +  W +L+S C    +   G  A D   +M   G +P  Y T+S V+    
Sbjct: 473 IRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAM--DGDNPVNYVTLSNVLAEAG 530

Query: 258 KLRNLDK 264
           + R   K
Sbjct: 531 EWRECHK 537


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 298/547 (54%), Gaps = 15/547 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K + +D A  +F  +P  D VSWNS+ISG       + A+  F  M+  G+ PS F+   
Sbjct: 402 KCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFS--- 458

Query: 153 LLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           ++ST+SS         G+QIHG  I+ GL L +V + N+L+ +Y +   +     VF  M
Sbjct: 459 VISTLSSCASLGWIMLGQQIHGEGIKCGLDL-DVSVSNALLTLYAETDCMEEYQKVFFLM 517

Query: 207 EELDIISWNSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            E D +SWNS I     S    L A+  F  M  +G+ P+  T   +++A + L  L+ G
Sbjct: 518 PEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELG 577

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGR 324
           +Q+ AL +K     ++ + +  +  + KC ++ED   +F ++ +R D    N MIS Y  
Sbjct: 578 RQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIH 637

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G    A+ L  LM+++  R  +FTL+ VLS+   +  +E G + H+ AI++  ++  VV
Sbjct: 638 NGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVV 697

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L++MYAK G ID ++  F  +  R++ SWN+++ G  ++G   + L +F ++ + G 
Sbjct: 698 GSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQ 757

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +T   VL AC++ G VD+G   F +M E Y + P  EH++C++DLL +AG + K  
Sbjct: 758 LPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLE 817

Query: 504 DITSTMPFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           +   TMP  P   IW +IL A   A   + +L    A+ +++L+  + + Y LL+  +A 
Sbjct: 818 EFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAA 877

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G+WE +   +  MR   + K  GCSW+ +K+ ++ F AG+  H   +KIY  L+ +  +
Sbjct: 878 GGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNK 937

Query: 622 MEDEGCV 628
           M D G V
Sbjct: 938 MRDLGYV 944



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 242/497 (48%), Gaps = 44/497 (8%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           K  F    Y+G+  +  ++R+G  D    +F+++  +N ++ N  + GL +    + A K
Sbjct: 278 KSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAK 337

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSILLSTVSSAC 161
           +F E+   D+V  N+          S YA+ +           S FT FS L        
Sbjct: 338 IFKEMK--DLVEINA----------SSYAVLL-----------SAFTEFSNLKEGKRK-- 372

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G+++H  +IR+ L    +++GN+L+++Y K   +  A  +F  M   D +SWNS+ISG 
Sbjct: 373 -GQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGL 431

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            ++   E A+  F++MR +G  P ++++   +++C  L  +  G+Q+    +K G   + 
Sbjct: 432 DHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDV 491

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV----ALELFQL 337
            V +A + L+++ + +E+  ++F  +  +D    N  I   G     E     A++ F  
Sbjct: 492 SVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFI---GALATSEASVLQAIKYFLE 548

Query: 338 MLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M++   +P   T ++ + +   +  +E G Q H++ +K     +  + ++L+  Y K   
Sbjct: 549 MMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQ 608

Query: 397 IDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           ++    IF ++ ++RD VSWN ++ G   NG   + + +   ++++G   D  TLA VL 
Sbjct: 609 MEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLS 668

Query: 456 ACNYGGFVDKGMLVFS-AMKE--EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           AC     +++GM V + A++   E  V+ G    + ++D+  + G++  A      MP +
Sbjct: 669 ACASVATLERGMEVHACAIRACLEAEVVVG----SALVDMYAKCGKIDYASRFFELMPVR 724

Query: 513 PGCSIWESILRASAIYG 529
              S W S++   A +G
Sbjct: 725 NIYS-WNSMISGYARHG 740



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 229/491 (46%), Gaps = 54/491 (10%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG--- 64
           +H     L+   QL+  C          + H HL     N         LD Y+R+    
Sbjct: 13  SHARSTQLALSEQLLHHC---------NSSHHHLHFPPLN---------LD-YNRYRDSC 53

Query: 65  TSDDVLQLFDEIPQKNCIS---W-NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           T +D  QL  +I +    S   W N  +   +++ NL +A K+FDE+P+ ++VSW+ ++S
Sbjct: 54  TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---------GKQIHGSMI 171
           GYA  G  D A  +F  +   G+ P+ +     + +   AC          G +IHG + 
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYA----IGSALRACQELGPNMLKLGMEIHGLIS 169

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           +S  + S++VL N L+ MY      +  A  VF  ++     SWNS+IS     G    A
Sbjct: 170 KSPYA-SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISA 228

Query: 231 LDQFYSMRYSGYS----PDEYTI-SIVINACTKLR-NLDKGKQVFALSVKVGFLSNSIVL 284
              F SM+         P+EYT  S+V  AC+ +   L   +Q+ A   K  F+ +  V 
Sbjct: 229 FKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVG 288

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           SA +  F++   ++ +  +FEQ+D  +   +N ++    R   GE A ++F+ M ++ + 
Sbjct: 289 SALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVE 347

Query: 345 PTEFTLSCVLSSIP-----IPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSID 398
               + + +LS+             G + H+  I++   D   ++ ++L+ +YAK  +ID
Sbjct: 348 INASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAID 407

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           ++  IF  +  +D VSWN+I+ GL  N R  E +  F  +   G+ P + ++ + L +C 
Sbjct: 408 NARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCA 467

Query: 459 YGGFVDKGMLV 469
             G++  G  +
Sbjct: 468 SLGWIMLGQQI 478



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 186/407 (45%), Gaps = 42/407 (10%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S       + IHG   K G +    + N  L LY+     ++  ++F  +P+ + 
Sbjct: 463 LSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQ 522

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SWN  +  L  S              E  V+                 A++ F +M   
Sbjct: 523 VSWNSFIGALATS--------------EASVLQ----------------AIKYFLEMMQA 552

Query: 142 GVRPSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G +P+  TF      +S++S    G+QIH  +++  ++  N +  N+L+  YGK   +  
Sbjct: 553 GWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAI-ENTLLAFYGKCEQMED 611

Query: 199 AFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
              +F  M E  D +SWN++ISG  ++G    A+   + M   G   D++T++ V++AC 
Sbjct: 612 CEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACA 671

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  L++G +V A +++    +  +V SA +D+++KC +++ + R FE +   +    N 
Sbjct: 672 SVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNS 731

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKS 375
           MIS Y R+G G  AL+LF  M +    P   T   VLS+   +  V+ G   F SM    
Sbjct: 732 MISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVY 791

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVK---LDKRDLVSWNTIM 419
                    S ++++  + G +    E F+K   ++   L+ W TI+
Sbjct: 792 ELAPRIEHFSCMVDLLGRAGDVKKLEE-FIKTMPMNPNALI-WRTIL 836



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +    +H    +    A   +G+  +D+Y++ G  D   + F+ +P 
Sbjct: 664 ATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPV 723

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +N  SWN  + G  +  +   ALK+F ++ +    PD V++  ++S  +  G  D   E 
Sbjct: 724 RNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEH 783

Query: 135 FSKM-QLQGVRPSGFTFSILLSTVSSACHGKQI 166
           F  M ++  + P    FS ++  +  A   K++
Sbjct: 784 FKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKL 816


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 306/621 (49%), Gaps = 59/621 (9%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +L +C +   RC      D  + +HG +   G +   +L N  +D+YS+ G         
Sbjct: 154 ALGFCGE---RC----DLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCG--------- 197

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                  LD A+ +FD   E D VSWNS+ISGY   G ++  L 
Sbjct: 198 ----------------------KLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLN 235

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC----------HGKQIHGSMIRSGLSLSNVVLG 183
           + +KM   G+  + +     L +V  AC           G  IH    + G+   ++V+ 
Sbjct: 236 LLAKMHRDGLNLTTYA----LGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEF-DIVVR 290

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN-----SGYGELALDQFYSMR 238
            +L+DMY K G L  A  +F  M   +++++N++ISG              A   F  M+
Sbjct: 291 TALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQ 350

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G  P   T S+V+ AC+  + L+ G+Q+ AL  K  F S+  + SA I+L++     E
Sbjct: 351 RRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTE 410

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           D ++ F    + D A    MI  + +    E A +LF+ +    IRP E+T+S ++S+  
Sbjct: 411 DGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACA 470

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               +  G Q    AIKSG D+   V +S + MYAK+G++  + ++F+++   D+ +++ 
Sbjct: 471 DFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSA 530

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++  L Q+G A E L++FE +   G+ P++     VL+AC +GG V +G+  F  MK +Y
Sbjct: 531 MISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQCMKNDY 590

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P E+H+ C++DLL + G+L  A ++  +  FQ     W ++L +  +Y D  + + V
Sbjct: 591 RINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSCRVYKDSVIGKRV 650

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           AER+M+L+  +   Y LL   Y   G   +   V+++MR  G+ K    SWI I N+ ++
Sbjct: 651 AERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHS 710

Query: 598 FNAGELQHHGGQKIYLVLRLL 618
           F   +L H   Q IY +L  +
Sbjct: 711 FAVADLSHPSSQMIYTMLETM 731



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 240/527 (45%), Gaps = 58/527 (11%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K  HGH+ K   N   YL N  L++Y +        QLFD +P++N IS         
Sbjct: 65  LGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIIS--------- 115

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                                 +NS+ISGY   G+ + A+E+F + +   ++   FT++ 
Sbjct: 116 ----------------------FNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAG 153

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L      C    G+ +HG ++ +GLS   V L N LIDMY K G L  A  +F   +E 
Sbjct: 154 ALGFCGERCDLDLGELLHGLVVVNGLS-QQVFLINVLIDMYSKCGKLDQAMSLFDRCDER 212

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN---LDKGK 266
           D +SWNSLISG    G  E  L+    M   G +   Y +  V+ AC    N   ++KG 
Sbjct: 213 DQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGM 272

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +   + K+G   + +V +A +D+++K   L+++++LF  +   +    N MIS  G   
Sbjct: 273 AIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMIS--GFLQ 330

Query: 327 FGEV-------ALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFD 378
             E+       A +LF  M R  + P+  T S VL +      +E+G Q H++  K+ F 
Sbjct: 331 MDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQ 390

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+  + S+L+E+YA  GS +   + F    K+D+ SW +++    QN +     D+F +L
Sbjct: 391 SDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQL 450

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLC 494
               + P+  T++ ++ AC      D   L      + Y +  G + +  +    I +  
Sbjct: 451 FSSHIRPEEYTVSLMMSAC-----ADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYA 505

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           ++G +  A  +   +   P  + + +++ + A +G      N+ E M
Sbjct: 506 KSGNMPLANQVFIEVQ-NPDVATYSAMISSLAQHGSANEALNIFESM 551



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 171/329 (51%), Gaps = 13/329 (3%)

Query: 150 FSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           + IL  T +   S   GK  HG MI+S L+    +L N+L++MY K   L +A  +F  M
Sbjct: 50  YKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLL-NNLLNMYCKCRELGFARQLFDRM 108

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            E +IIS+NSLISG    G+ E A++ F   R +    D++T +  +  C +  +LD G+
Sbjct: 109 PERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGE 168

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +  L V  G      +++  ID++SKC +L+ ++ LF++ D  D    N +IS Y R G
Sbjct: 169 LLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVG 228

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP----VEHGSQFHSMAIKSGFDSNAV 382
             E  L L   M R+ +  T + L  VL +  I      +E G   H    K G + + V
Sbjct: 229 AAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIV 288

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ-----NGRAAETLDVFEE 437
           V ++L++MYAK GS+  + ++F  +  +++V++N ++ G  Q     +  ++E   +F +
Sbjct: 289 VRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMD 348

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +   GL P   T + VL AC+    ++ G
Sbjct: 349 MQRRGLEPSPSTFSVVLKACSAAKTLEYG 377



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 148/307 (48%), Gaps = 28/307 (9%)

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ KC  L  + +LF+++   +    N +IS Y + GF E A+ELF      +++  +FT
Sbjct: 91  MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFT 150

Query: 350 LSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
            +  L        ++ G   H + + +G      + + L++MY+K G +D +  +F + D
Sbjct: 151 YAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCD 210

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG---GFVDK 465
           +RD VSWN+++ G  + G A E L++  ++  +GL      L +VL AC      GF++K
Sbjct: 211 ERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEK 270

Query: 466 GMLVF---SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           GM +    + +  E+ ++        ++D+  + G L +AI + S MP +        + 
Sbjct: 271 GMAIHCYTAKLGMEFDIVV----RTALLDMYAKNGSLKEAIKLFSLMPSK------NVVT 320

Query: 523 RASAIYGDVKLTENVAER-------MMDLQL----PSPLPYSLLTQAYAMRGRWEAIVRV 571
             + I G +++ E   E         MD+Q     PSP  +S++ +A +     E   ++
Sbjct: 321 YNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQI 380

Query: 572 KKVMRKN 578
             ++ KN
Sbjct: 381 HALICKN 387


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/540 (31%), Positives = 290/540 (53%), Gaps = 21/540 (3%)

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           +LFD++P++N ISWN  + G +K+  +  A KVFD++PE +VVSW SM+ GY   G  D 
Sbjct: 68  KLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDE 127

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A  +F +M  + V     +++++L  +     G+      +   + + +VV   ++I   
Sbjct: 128 AELLFWRMPEKNV----VSWTVMLGGLIE--DGRVDEARRLFDMIPVKDVVASTNMIGGL 181

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD--EYT 248
              G L  A  +F  M + ++++W S+ISG   +   ++A   F  M      PD  E T
Sbjct: 182 CSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM------PDKNEVT 235

Query: 249 ISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            + ++   T+   +++  ++F A+ VK     N +++      F     +  +  +F+Q+
Sbjct: 236 WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMG-----FGLNGEVGKARWVFDQM 290

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGS 366
              D    + +I  Y R GF   AL LF LM RE +RP   ++  +LS    +  ++HG 
Sbjct: 291 KEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGR 350

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q HS  ++S FD +  V+S L+ MY K G + +   +F +   +D+V WN+I+ G  Q+G
Sbjct: 351 QVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHG 410

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              + L+VF E+   G  PD IT   VL AC Y G V +G+ +F +MK +Y V    EHY
Sbjct: 411 FGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHY 470

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC++DLL +AG+L +A+++   MP +    +W ++L A   + ++ L E  A++++ L+ 
Sbjct: 471 ACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEP 530

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            S  PY LL+  YA + RW+ +  ++K MR   ++K  GCSWI + N+++ F  G    H
Sbjct: 531 SSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASH 590



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 187/411 (45%), Gaps = 44/411 (10%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK----------------- 102
           Y + G  D+   LF  +P+KN +SW + L GL++   +D A +                 
Sbjct: 119 YVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMI 178

Query: 103 --------------VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                         +FDE+P+ +VV+W SMISGYA     D A ++F  M  +    +  
Sbjct: 179 GGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEV 234

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           T++ +L   + +  G+    + +   + +  V   N +I  +G  G +  A  VF  M+E
Sbjct: 235 TWTAMLKGYTRS--GRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKE 292

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D  +W++LI      G+   AL  F  M+  G  P+  +I  +++ C  L +LD G+QV
Sbjct: 293 KDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQV 352

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            +  V+  F  +  V S  I ++ KC  L    R+F++    D  + N +I+ Y ++GFG
Sbjct: 353 HSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFG 412

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQ-FHSMAIKSGFDSNAVVASS 386
           E ALE+F  M      P E T   VLS+      V+ G + F SM  K   D      + 
Sbjct: 413 EKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYAC 472

Query: 387 LMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           ++++  + G ++ +  +   +  + D + W  ++       R  + LD+ E
Sbjct: 473 MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSAC----RTHKNLDLAE 519



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 38/227 (16%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  S D  + +H  L +  F+   Y+ +  + +Y + G      ++FD    K+ + W
Sbjct: 340 CGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMW 399

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               S+I+GYA  G+ + ALE+F +M   G  
Sbjct: 400 N-------------------------------SIIAGYAQHGFGEKALEVFHEMFSSGAA 428

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   TF  +LS          G +I  SM               ++D+ G+ G L  A  
Sbjct: 429 PDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMN 488

Query: 202 VFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSP 244
           +  NM  E D I W +L+S C    N    E+A  +   +  S   P
Sbjct: 489 LIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGP 535



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 149/353 (42%), Gaps = 52/353 (14%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           S+  +    I  + +LG +  A  +F +++   + SWN++++G F++     A   F  M
Sbjct: 14  SSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM 73

Query: 238 RYSGYSPDEYTISI--VINACTKLRNLDKGKQVFA----------LSVKVGFLSNSIVLS 285
                 P+  TIS   +++   K   + + ++VF            S+  G++   ++  
Sbjct: 74  ------PERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDE 127

Query: 286 ATIDLFSKC------------------NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           A + LF +                    R++++ RLF+ +   D      MI      G 
Sbjct: 128 AEL-LFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGR 186

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
              A E+F  M + ++      +S    +  +        F  M      D N V  +++
Sbjct: 187 LSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVAR--KLFEVMP-----DKNEVTWTAM 239

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++ Y ++G I+ + E+F  +  + + + N ++MG   NG   +   VF+++ E+    D 
Sbjct: 240 LKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEK----DD 295

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            T +A++      GF  + + +FS M+ E GV P   ++  II +L   G L 
Sbjct: 296 GTWSALIKIYERKGFELEALALFSLMQRE-GVRP---NFPSIISILSVCGSLA 344


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 172/590 (29%), Positives = 310/590 (52%), Gaps = 39/590 (6%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           + H +  +    ++++  C    S      +H  + K+GF+++ Y+ +  +D+Y + G  
Sbjct: 71  QQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGA- 129

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
                                         + +A ++FDE+P  +VV+WNS+ISGY   G
Sbjct: 130 ------------------------------VSSAQRLFDEMPHRNVVTWNSLISGYLHVG 159

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLG 183
             + A+E+F +M   G+ P+ F+ S +L     +     G Q+HG  ++ G    N+V+G
Sbjct: 160 CPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCY-NIVVG 218

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
             LID+Y K   +  +  +F  M E +II+W S+++G  +      A+     M+  G  
Sbjct: 219 TCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIR 278

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR--LEDSV 301
            +  T + ++++ +   +LD  KQV    ++ G  SNS +    + ++S+C+   LED  
Sbjct: 279 LNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFN 338

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           ++   + RWD    N +I      G GE AL+ F  M +  I    FT + VL +I  I 
Sbjct: 339 KVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMIS 398

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            ++ G Q H++ +K+G+ SN  V + L+ MYA+ GSI+ +  +F  +D+ D++SWN+++ 
Sbjct: 399 TLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLS 458

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV- 479
           G   +G   E +++FE++   G+ PD  T   VL AC + G +DKG+  F  M+ +Y + 
Sbjct: 459 GCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDYSLE 518

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  EHY+ ++DL  +AG L +A D  +TMP +PG S+++++L A  ++G+V++    A+
Sbjct: 519 SPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVEIAVRCAK 578

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           +++ +    P+ Y LL+   A  G W+ +  ++KVM   G+ K  G SWI
Sbjct: 579 KLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRKEPGYSWI 628



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 223/459 (48%), Gaps = 15/459 (3%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           L+S  + T        P  D  S NS I+       S   L++ +++Q  G  P+    +
Sbjct: 24  LRSRAVTTQTNRLALFPGNDFFSCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILN 83

Query: 152 ILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            ++S+ +   S   G Q+H ++I+ G   SNV + ++L+DMYGK G +  A  +F  M  
Sbjct: 84  RMVSSCAKSGSVFVGIQLHSTIIKVGFD-SNVYICSALVDMYGKCGAVSSAQRLFDEMPH 142

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            ++++WNSLISG  + G  E+A++ F  M   G  P  +++S V+  C ++ +   G QV
Sbjct: 143 RNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQV 202

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
             LS+K GF  N +V +  IDL+SK   ++ S  +F+ +   +      M++ Y      
Sbjct: 203 HGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQP 262

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSL 387
             A+ L + M R  IR    T +C+LSS      ++H  Q H   I+ G +SN+ +  +L
Sbjct: 263 VAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTL 322

Query: 388 MEMYAKTGSIDSSTEIFVK----LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           + +Y++  S  SS E F K    + + D +SWN ++ GL+  G     L  F ++ + G+
Sbjct: 323 VTVYSECSS--SSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGI 380

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
             D  T  +VL A      +D+G  + +  +K  YG     ++   ++ +  + G +  A
Sbjct: 381 DMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNG--LVSMYARCGSINDA 438

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             + S M      S W S+L   A +G  +    + E+M
Sbjct: 439 KRVFSLMDRHDVIS-WNSLLSGCAYHGYGREAVELFEQM 476


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 301/600 (50%), Gaps = 58/600 (9%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C++ +D  +  +       IHG   KLG +    + N  +D+YS+ G   +   LFD
Sbjct: 141 LPVCAREVDVQMGIR-------IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD 193

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           +  +KN                                VSWN+MI G  + GY   A  +
Sbjct: 194 KNNRKN-------------------------------AVSWNTMIGGLCTKGYIFEAFNL 222

Query: 135 FSKMQLQ-----------GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG 183
           F +MQ+Q            + P+    S L S        K++HG  IR G     +V  
Sbjct: 223 FREMQMQEDIEVNEVTVLNILPACLEISQLRSL-------KELHGYSIRHGFQYDELV-A 274

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N  +  Y K G+L  A  VF +ME   + SWN+LI GC  +G    AL+ +  M YSG  
Sbjct: 275 NGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLV 334

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PD +TI  ++ A   L++L  GK+V    ++ G   +S +  + + L+  C     +  L
Sbjct: 335 PDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLL 394

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPV 362
           F+ ++       N MIS Y + G  E AL LF+ ++ +  +P++  +  VL +      +
Sbjct: 395 FDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSAL 454

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G + H  A+K+    +  VA S ++MYAK+G I  S  +F  L  +DL SWN I+   
Sbjct: 455 RLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAY 514

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
             +G   E++++FE + + G  PD  T   +L  C++ G V++G+  F+ M+  +G+ P 
Sbjct: 515 GVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPK 574

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            EHYAC++D+L +AG+L  A+ +   MP QP   +W S+L     +G++++ + VAE+++
Sbjct: 575 LEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLL 634

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           +L+  +   Y  L+  YA  GRW+ + RV+++++  G+ K  GCSWI +  ++++F AG+
Sbjct: 635 ELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGD 694



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 180/338 (53%), Gaps = 10/338 (2%)

Query: 127 YSDYALEMFSKMQLQG-VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVL 182
           YSD A++MF K+          FTF  ++   + +     G+ IHG +I+ GL L +V +
Sbjct: 11  YSD-AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLL-DVFV 68

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY--S 240
           GN+LI MYGK G +  A  VF  M   +++SWNS+ISG   +G+ +   D    M     
Sbjct: 69  GNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEE 128

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G  PD  T+  V+  C +  ++  G ++  L+VK+G   +  V ++ +D++SKC  L ++
Sbjct: 129 GLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM-LREDIRPTEFTLSCVLSS-IP 358
             LF++ +R +    N MI      G+   A  LF+ M ++EDI   E T+  +L + + 
Sbjct: 189 QMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLE 248

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           I  +    + H  +I+ GF  + +VA+  +  YAK G +  +  +F  ++ + + SWN +
Sbjct: 249 ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNAL 308

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           + G  QNG   + L+++ ++   GL PD  T+ ++LLA
Sbjct: 309 IGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLA 346



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 230 ALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
           A+D F  +   + ++ D +T   VI ACT   +   G+ +  + +K+G L +  V +A I
Sbjct: 14  AIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALI 73

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML--REDIRPT 346
            ++ K   ++ +V++F  +   +    N +IS +   GF +   ++   M+   E + P 
Sbjct: 74  AMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPD 133

Query: 347 EFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
             TL  VL        V+ G + H +A+K G   +  V +SL++MY+K G +  +  +F 
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFD 193

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLAC 457
           K ++++ VSWNT++ GL   G   E  ++F E+ ++E +  + +T+  +L AC
Sbjct: 194 KNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/584 (30%), Positives = 296/584 (50%), Gaps = 22/584 (3%)

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD   +     WN  L    K      A  VFD +P  D VSWN+MISG+   G  D + 
Sbjct: 69  FDGSQRNALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSF 128

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHG----------KQIHGSMIRSGLSLSNVVL 182
           + F +M         F     L+T+ S C G          + IHG +   G     + +
Sbjct: 129 KFFKQMTESNRVCCRFD-KATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFE-REITV 186

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG- 241
           GN+LI  Y K         VF  M E ++++W ++ISG   + + E +L  F  MR  G 
Sbjct: 187 GNALITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGS 246

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            SP+  T    + AC+ L+ L  G+++  L  K+G  S+  + SA +DL+SKC  L+ + 
Sbjct: 247 VSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAW 306

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           ++FE  +  D   + V++  + + GF E A+++F  M+   +      +S VL    +  
Sbjct: 307 QIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGT 366

Query: 362 -VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +  G Q HS+ IK  F  N  V + L+ MY+K G +  S  +F ++ +++ VSWN+++ 
Sbjct: 367 YLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIA 426

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
              ++G   + L  +EE+  EG+ P  +T  ++L AC++ G V+KGM +  +M  ++G+ 
Sbjct: 427 AFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGIS 486

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  EHYAC++D+L +AG L +A      +P   G  +W+++L A +I+GD ++ +  A+R
Sbjct: 487 PRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADR 546

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           +      SP PY L+   Y+  G W+      K M++ G+ K  G SWI I+ ++ +F  
Sbjct: 547 LFSAAPASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKVNSFVV 606

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEGCV--------YLECDKLD 636
           G+  H     I+ VL  L   ++DEG V        YLE DK D
Sbjct: 607 GDKLHPEADVIFWVLSGLLKHLKDEGYVPDKKFILFYLEQDKED 650



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 54/227 (23%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K IH  + K  F  + ++GN  +++YS+ G   D L +F ++ QKN +SW        
Sbjct: 370 LGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSW-------- 421

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                                  NS+I+ +A  G    AL+ + +M+++GV P+  TF  
Sbjct: 422 -----------------------NSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLS 458

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS-----------LIDMYGKLGVLYYAFG 201
           LL   S        H  ++  G+ L   +  +            ++DM G+ G L  A  
Sbjct: 459 LLHACS--------HAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKK 510

Query: 202 VFLNMEEL-DIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSP 244
               + E   ++ W +L+  C    +S  G+ A D+ +S   +  +P
Sbjct: 511 FIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASPAP 557


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 319/622 (51%), Gaps = 52/622 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L+D           K +H  +FK+GF    ++    + LYSR+G          
Sbjct: 131 LKACVSLVD----------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV--------- 171

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                 LD A KVF ++P  DV SWN+MISG+   G +  AL +
Sbjct: 172 ----------------------LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            ++M+ +GV+    T + +L   + +    +G  IH  +++ GL  S+V + N+LI+MY 
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD-SDVFVSNALINMYS 268

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  A  VF  ME  D++SWNS+I+    +     AL  F  M+  G  PD  T+  
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVS 328

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRW 310
           + +  ++L +    + +    ++  +L   +V+ +A +++++K   +  +  +F+QL R 
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP----IPPVEHGS 366
           D    N +++ Y + G    A++ + +M  E+ R T       +S IP    +  ++ G 
Sbjct: 389 DTISWNTLVTGYTQNGLASEAIDAYNMM--EECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H+  IK+    +  VA+ L+++Y K G ++ +  +F ++ +   V WN I+  L  +G
Sbjct: 447 KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHG 506

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           R  E L +F+++L E +  D IT  ++L AC++ G VD+G   F  M++EYG+ P  +HY
Sbjct: 507 RGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHY 566

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL +AG L KA ++   MP QP  SIW ++L A  IYG+ +L    ++R++++  
Sbjct: 567 GCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS 626

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            +   Y LL+  YA   +WE +++V+ + R  G+ K  G S + + ++   F  G   H 
Sbjct: 627 ENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHP 686

Query: 607 GGQKIYLVLRLLTWEMEDEGCV 628
              +IY  L++L+ +M+  G V
Sbjct: 687 KYTEIYKELKVLSAKMKSLGYV 708



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 221/434 (50%), Gaps = 12/434 (2%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYAL----EMFSKMQLQGVRPSGFTFSILLSTVSS 159
           FD I + ++ SWNS+IS Y   G    A+    ++FS      +RP  +TF  +L    S
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS 136

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              GK++H  + + G    +V +  SL+ +Y + GVL  A  VF++M   D+ SWN++IS
Sbjct: 137 LVDGKKVHCCVFKMGFE-DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMIS 195

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G   +G    AL     M+  G   D  T++ ++  C +  ++  G  +    +K G  S
Sbjct: 196 GFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDS 255

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V +A I+++SK  RL+D+  +F+Q++  D    N +I+ Y +      AL  F+ M 
Sbjct: 256 DVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 340 REDIRP---TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
              IRP   T  +L+ + S +    +   S    +  +   D + V+ ++L+ MYAK G 
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISR-SILGFVIRREWLDKDVVIGNALVNMYAKLGY 374

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLL 455
           ++ +  +F +L ++D +SWNT++ G TQNG A+E +D +  + E     P++ T  +++ 
Sbjct: 375 MNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIP 434

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           A ++ G + +GM + + + +   +        C+IDL  + G+L  A+ +   +P     
Sbjct: 435 AYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSV 493

Query: 516 SIWESILRASAIYG 529
             W +I+ +  I+G
Sbjct: 494 P-WNAIIASLGIHG 506



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           V    + H++ +  G   N V+++ L+ +Y   G I  S   F  + K+++ SWN+I+  
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 422 LTQNGRAAETLDVFEELLEE----GLPPDRITLAAVLLAC 457
             + G+  E ++   +L        L PD  T   +L AC
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC 134


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 319/622 (51%), Gaps = 52/622 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L+D           K +H  +FK+GF    ++    + LYSR+G          
Sbjct: 131 LKACVSLVD----------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV--------- 171

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                 LD A KVF ++P  DV SWN+MISG+   G +  AL +
Sbjct: 172 ----------------------LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            ++M+ +GV+    T + +L   + +    +G  IH  +++ GL  S+V + N+LI+MY 
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD-SDVFVSNALINMYS 268

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  A  VF  ME  D++SWNS+I+    +     AL  F  M+  G  PD  T+  
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVS 328

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRW 310
           + +  ++L +    + +    ++  +L   +V+ +A +++++K   +  +  +F+QL R 
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK 388

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP----IPPVEHGS 366
           D    N +++ Y + G    A++ + +M  E+ R T       +S IP    +  ++ G 
Sbjct: 389 DTISWNTLVTGYTQNGLASEAIDAYNMM--EECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H+  IK+    +  VA+ L+++Y K G ++ +  +F ++ +   V WN I+  L  +G
Sbjct: 447 KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHG 506

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           R  E L +F+++L E +  D IT  ++L AC++ G VD+G   F  M++EYG+ P  +HY
Sbjct: 507 RGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHY 566

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL +AG L KA ++   MP QP  SIW ++L A  IYG+ +L    ++R++++  
Sbjct: 567 GCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS 626

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            +   Y LL+  YA   +WE +++V+ + R  G+ K  G S + + ++   F  G   H 
Sbjct: 627 ENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHP 686

Query: 607 GGQKIYLVLRLLTWEMEDEGCV 628
              +IY  L++L+ +M+  G V
Sbjct: 687 KYTEIYKELKVLSAKMKSLGYV 708



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 221/434 (50%), Gaps = 12/434 (2%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYAL----EMFSKMQLQGVRPSGFTFSILLSTVSS 159
           FD I + ++ SWNS+IS Y   G    A+    ++FS      +RP  +TF  +L    S
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS 136

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              GK++H  + + G    +V +  SL+ +Y + GVL  A  VF++M   D+ SWN++IS
Sbjct: 137 LVDGKKVHCCVFKMGFE-DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMIS 195

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G   +G    AL     M+  G   D  T++ ++  C +  ++  G  +    +K G  S
Sbjct: 196 GFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDS 255

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V +A I+++SK  RL+D+  +F+Q++  D    N +I+ Y +      AL  F+ M 
Sbjct: 256 DVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ 315

Query: 340 REDIRP---TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
              IRP   T  +L+ + S +    +   S    +  +   D + V+ ++L+ MYAK G 
Sbjct: 316 LGGIRPDLLTVVSLTSIFSQLSDQRISR-SILGFVIRREWLDKDVVIGNALVNMYAKLGY 374

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLL 455
           ++ +  +F +L ++D +SWNT++ G TQNG A+E +D +  + E     P++ T  +++ 
Sbjct: 375 MNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIP 434

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           A ++ G + +GM + + + +   +        C+IDL  + G+L  A+ +   +P     
Sbjct: 435 AYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSV 493

Query: 516 SIWESILRASAIYG 529
             W +I+ +  I+G
Sbjct: 494 P-WNAIIASLGIHG 506



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           V    + H++ +  G   N V+++ L+ +Y   G I  S   F  + K+++ SWN+I+  
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 422 LTQNGRAAETLDVFEELLEE----GLPPDRITLAAVLLAC 457
             + G+  E ++   +L        L PD  T   +L AC
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC 134


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 290/542 (53%), Gaps = 12/542 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A  VF+   E D VSWNS+I+GY   G +D  L +  KM   G+  + +    
Sbjct: 88  KCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGS 147

Query: 153 LL----STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            L    S  SS+   GK +HG  ++ GL L +VV+G +L+D Y K+G L  A  +F  M 
Sbjct: 148 ALKACGSNFSSSIECGKMLHGCAVKLGLDL-DVVVGTALLDTYAKIGDLEDATKIFKLMP 206

Query: 208 ELDIISWNSLISGCFN-----SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           + +++ +N++I+G          +   A+  F+ M+  G  P E+T S ++ AC+ +   
Sbjct: 207 DPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAF 266

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           + GKQ+ A   K    S+  + +A ++L+S    +ED ++ F    + D      +I  +
Sbjct: 267 ECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGH 326

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G  E  L LF  +L    +P EFT+S +LS+   +  V+ G Q H+ AIK+G  +  
Sbjct: 327 VQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFT 386

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           ++ +S + MYAK G IDS+   F +    D+VSW+ ++    Q+G A E +D+FE +   
Sbjct: 387 IIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGS 446

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ P+ IT   VL+AC++GG V++G+  F  MK+++G+ P  +H ACI+DLL +AG+L +
Sbjct: 447 GIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAE 506

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A        F+    +W S+L A  ++      + VAER+++L+  +   Y LL   Y  
Sbjct: 507 AESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYND 566

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G       ++ +M+  G+ K  G SWI + N +++F AG+  H   Q IY+ L  +  E
Sbjct: 567 AGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEE 626

Query: 622 ME 623
           ++
Sbjct: 627 IK 628



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 247/489 (50%), Gaps = 25/489 (5%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---G 163
           +P+ +VVSWNS+ISGY   G+    + +F + ++  +R   FTFS  LS          G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           + IH  +  SGL    V+L NSLIDMY K G + +A  VF + +ELD +SWNSLI+G   
Sbjct: 61  RLIHALITVSGLG-GPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--LRNLDKGKQVFALSVKVGFLSNS 281
            G  +  L     M   G + + Y +   + AC      +++ GK +   +VK+G   + 
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY-----GFGEVALELFQ 336
           +V +A +D ++K   LED+ ++F+ +   +  + N MI+ + +       F   A+ LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 337 LMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M    ++P+EFT S +L +   I   E G Q H+   K    S+  + ++L+E+Y+ +G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           SI+   + F    K D+VSW ++++G  QNG+    L +F ELL  G  PD  T++ +L 
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID-LLCQAGQLGKAIDITSTMPFQ-- 512
           AC     V  G  + +     Y +  G  ++  I +  +C   + G  ID ++ M F+  
Sbjct: 360 ACANLAAVKSGEQIHA-----YAIKTGIGNFTIIQNSQICMYAKCGD-ID-SANMTFKET 412

Query: 513 --PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIV 569
             P    W  ++ ++A +G  K   ++ E M    + P+ + +  +  A +  G  E  +
Sbjct: 413 KNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGL 472

Query: 570 RVKKVMRKN 578
           R  ++M+K+
Sbjct: 473 RYFEIMKKD 481



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 204/398 (51%), Gaps = 37/398 (9%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S +  K +HG   KLG +    +G   LD Y++ G  +D  ++F  +P  N + +N  + 
Sbjct: 159 SIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIA 218

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G L+ + +       DE                    +++ A+ +F +MQ +G++PS FT
Sbjct: 219 GFLQMETMA------DE--------------------FANEAMYLFFEMQSRGMKPSEFT 252

Query: 150 FSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +L   ST+ +   GKQIH  + +  L  S+  +GN+L+++Y   G +      F + 
Sbjct: 253 FSSILKACSTIEAFECGKQIHAQIFKYNLQ-SDEFIGNALVELYSLSGSIEDGLKCFHST 311

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +LD++SW SLI G   +G  E  L  F+ + +SG  PDE+TISI+++AC  L  +  G+
Sbjct: 312 PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGE 371

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A ++K G  + +I+ ++ I +++KC  ++ +   F++    D    +VMIS+  ++G
Sbjct: 372 QIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHG 431

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVA 384
             + A++LF+LM    I P   T   VL +      VE G + F  M    G   N   +
Sbjct: 432 CAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHS 491

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIM 419
           + ++++  + G + +  E F+ +D   + D V W +++
Sbjct: 492 ACIVDLLGRAGRL-AEAESFI-MDSGFEGDPVMWRSLL 527



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 36/286 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C + ++F+  K IH  +FK    +  ++GN  ++LYS  G+ +D L+ F   P+
Sbjct: 254 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPK 313

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + +SW                                S+I G+   G  +  L +F ++
Sbjct: 314 LDVVSW-------------------------------TSLIVGHVQNGQFEGGLTLFHEL 342

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P  FT SI+LS    +++   G+QIH   I++G+  +  ++ NS I MY K G 
Sbjct: 343 LFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIG-NFTIIQNSQICMYAKCGD 401

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F   +  DI+SW+ +IS     G  + A+D F  M+ SG +P+  T   V+ A
Sbjct: 402 IDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVA 461

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDS 300
           C+    +++G + F +  K   ++ ++  SA I DL  +  RL ++
Sbjct: 462 CSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEA 507


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/554 (31%), Positives = 288/554 (51%), Gaps = 36/554 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VFD I EP ++ WN+M  G+A       AL+++  M   G+ P+ +TF  LL
Sbjct: 51  DGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLL 110

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLS------------------------------NVV 181
            + + +     G+Q+HG +++ G  L                               +VV
Sbjct: 111 KSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVV 170

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
              +LI  Y   G +  A  +F  +   D++SWN+ ISG   +G  + AL+ F  M  + 
Sbjct: 171 SYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTN 230

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE T+  V++AC +  +++ G+QV +     GF  N  +++A IDL+SKC  LE + 
Sbjct: 231 VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETAC 290

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LF+ L   D    N +I  Y      + AL LFQ MLR   +P + T+  +LS+   + 
Sbjct: 291 GLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLG 350

Query: 361 PVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  R L SWN +
Sbjct: 351 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAM 410

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GRA    D+F  + + G+ PD IT   +L AC++ G +D G  +F +M  +Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYK 470

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           +MP  EHY C+IDL   +G   +A  + +TM  +P   IW S+L+A  ++G+V+L E+ A
Sbjct: 471 LMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYA 530

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           + ++ ++  +P  Y LL+  YA   RW  + + + ++   G+ KV GCS I I + ++ F
Sbjct: 531 QNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 599 NAGELQHHGGQKIY 612
             G+  H   ++IY
Sbjct: 591 IIGDKFHPRNREIY 604



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 176/341 (51%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +F   + +HG + K GF+   Y+    + +Y + G  +D  ++ D+   ++
Sbjct: 109 LLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      +++A K+FDEIP  DVVSWN+ ISGYA  G    ALE+F KM  
Sbjct: 169 VVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMK 228

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             VRP   T   +LS  + +     G+Q+H  +   G    N+ + N+LID+Y K G L 
Sbjct: 229 TNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFG-XNLKIVNALIDLYSKCGELE 287

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG  P++ T+  +++AC 
Sbjct: 288 TACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACA 347

Query: 258 KLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  +D G+   V+      G  + S + ++ ID+++KC  +E + ++F+ +     +  
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G    A ++F  M +  I P + T   +LS+
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VFD +    + SWN+MI G+A  G ++ A ++FS+M+  G+ P   TF  
Sbjct: 385 KCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVG 444

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM R    +  +     +ID+ G  G+   A  +   ME E
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEME 504

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
            D + W SL+  C    +G + L + Y+       P+
Sbjct: 505 PDGVIWCSLLKAC--KMHGNVELGESYAQNLIKIEPE 539


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 186/620 (30%), Positives = 307/620 (49%), Gaps = 48/620 (7%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           C  L+    + KSF   + +H H+        +TYL  +    Y+  G       +FD I
Sbjct: 62  CGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGI 121

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
             KN   W                               N MI GYAS G    +L ++ 
Sbjct: 122 VLKNSFLW-------------------------------NFMIRGYASNGLPMKSLVLYR 150

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           +M   G R   FT+  +L     AC        G+++H  ++  GL  S++ +GNSL+ M
Sbjct: 151 EMLCFGQRADNFTYPFVLK----ACGDLLLVEIGRRVHSEVVVCGLE-SDIYVGNSLLAM 205

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  VF  M E D+ SWN++ISG   +     A   F  M  +G   D  T+
Sbjct: 206 YAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTL 265

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
             +++AC  L+ + +GK +   +V+    + N    ++ I+++  CN + D+ RLFE++ 
Sbjct: 266 LGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERV- 324

Query: 309 RW-DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGS 366
           RW D    N MI  Y R G    +L LF+ M  +   P + T   VL +   I  + +G 
Sbjct: 325 RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGM 384

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             HS  +K GFD+N +V ++L++MY+K GS+  S  +F ++  + LVSW+ ++ G   +G
Sbjct: 385 SIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHG 444

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           R  E + + + +    + PD     ++L AC++ G V +G  +F  M++EY V P   HY
Sbjct: 445 RGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHY 504

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           +C++DLL +AG L +A  I  TM  +P   IW ++L AS ++ ++KL E  A+++ D+  
Sbjct: 505 SCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNP 564

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
                Y  L+  YA   RW+ + RV+ ++R+ G+ K  GCS+I + N ++ F  G+  H 
Sbjct: 565 KVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQ 624

Query: 607 GGQKIYLVLRLLTWEMEDEG 626
             + IY  L  L  ++++ G
Sbjct: 625 QTEDIYAKLNELKQQLKEAG 644


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 321/609 (52%), Gaps = 40/609 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F    ++H    K G  +   + N  ++LYS+ G                
Sbjct: 9   LLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCG---------------- 52

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          N+  A ++FDE+ + ++VSW+++ISGY   G    AL +FS+M+ 
Sbjct: 53  ---------------NVIFARRMFDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQMR- 96

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             + P+ + F+ ++S   ++++   G Q+H   ++ G  +S   + N+LI MY K G+  
Sbjct: 97  --IVPNEYVFASVISACASLTALSQGLQVHAQSLKLG-CVSVSFVSNALISMYMKCGLCT 153

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  V   M E + +S+N+LI+G   +   E  ++ F  MR  G++PD +T S ++  CT
Sbjct: 154 DALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICT 213

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +  +G Q+    +K+    ++ + +  I ++SK N +E++ ++F  +   D    N 
Sbjct: 214 SYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNT 273

Query: 318 MISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
           +++        E AL +F+ ML    ++P +FT + VL++   +  + HG Q H   I++
Sbjct: 274 LVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRT 333

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
               +  V+++L+ MYAK GSI +S ++F +   R+LVSWNTI+     +G  A  L+ F
Sbjct: 334 RQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHF 393

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E++   G+ PD +T   +L ACN+ G V++G + F++M+E YG+ P  EH++C+IDLL +
Sbjct: 394 EKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGR 453

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L +A +    +PF     I  S+L A  ++GD+ + E++A +++ LQ  +  PY LL
Sbjct: 454 AGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHLATQLLKLQPVTTSPYVLL 513

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA    W  +    K+++ +G+ K  G S I +      F  G+L H   ++I   +
Sbjct: 514 SNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLIDVMGMFEKFTMGDLSHSRIEEIKDTI 573

Query: 616 RLLTWEMED 624
           ++L W + +
Sbjct: 574 KMLNWTVSE 582



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 210/475 (44%), Gaps = 51/475 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C S  +      +H    KLG  + +++ N  + +Y + G   D L + + + +
Sbjct: 105 ASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSE 164

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +S+N                               ++I+G+      +  +E F  M
Sbjct: 165 PNAVSYN-------------------------------ALIAGFVENQQPEKGIEAFKVM 193

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +G  P  FTFS LL   +S      G Q+H  MI+  L   +  +GN +I MY K  +
Sbjct: 194 RQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLE-DSAFIGNVIITMYSKFNL 252

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVIN 254
           +  A  VF  ++E D+ISWN+L++ C      E AL  F  M    +  PD++T + V+ 
Sbjct: 253 IEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLA 312

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L ++  GKQ+    ++     +  V +A +++++KC  +++S  +F +    +   
Sbjct: 313 ACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVS 372

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS-QFHSMA 372
            N +I+ +G +G G  ALE F+ M    I P   T   +L++      VE G   F+SM 
Sbjct: 373 WNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSME 432

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG-LTQNGRAAET 431
              G   N    S L+++  + G +  + E   KL        + I++G L    R    
Sbjct: 433 EAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLP----FGHDPIILGSLLSACRLHGD 488

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACN-------YGGFVDK-GMLVFSAMKEEYG 478
           + + E L  + L    +T +  +L  N       +GG  +   ML +S +K+E G
Sbjct: 489 MVIGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPG 543



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            I  +++ C K++    G  + A ++K G LS+ IV +  I+L+SKC  +  + R+F+++
Sbjct: 5   AIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEM 64

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              +    + +IS Y + G   +AL LF  M    I P E+  + V+S+   +  +  G 
Sbjct: 65  SDRNLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQGL 121

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H+ ++K G  S + V+++L+ MY K G    +  +   + + + VS+N ++ G  +N 
Sbjct: 122 QVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQ 181

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           +  + ++ F+ + ++G  PDR T + +L  C
Sbjct: 182 QPEKGIEAFKVMRQKGFAPDRFTFSGLLGIC 212


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/542 (31%), Positives = 290/542 (53%), Gaps = 12/542 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A  VF+   E D VSWNS+I+GY   G +D  L +  KM   G+  + +    
Sbjct: 167 KCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGS 226

Query: 153 LL----STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            L    S  SS+   GK +HG  ++ GL L +VV+G +L+D Y K+G L  A  +F  M 
Sbjct: 227 ALKACGSNFSSSIECGKMLHGCAVKLGLDL-DVVVGTALLDTYAKIGDLEDATKIFKLMP 285

Query: 208 ELDIISWNSLISGCFN-----SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           + +++ +N++I+G          +   A+  F+ M+  G  P E+T S ++ AC+ +   
Sbjct: 286 DPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAF 345

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           + GKQ+ A   K    S+  + +A ++L+S    +ED ++ F    + D      +I  +
Sbjct: 346 ECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGH 405

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G  E  L LF  +L    +P EFT+S +LS+   +  V+ G Q H+ AIK+G  +  
Sbjct: 406 VQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFT 465

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           ++ +S + MYAK G IDS+   F +    D+VSW+ ++    Q+G A E +D+FE +   
Sbjct: 466 IIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGS 525

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ P+ IT   VL+AC++GG V++G+  F  MK+++G+ P  +H ACI+DLL +AG+L +
Sbjct: 526 GIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAE 585

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A        F+    +W S+L A  ++      + VAER+++L+  +   Y LL   Y  
Sbjct: 586 AESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYND 645

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G       ++ +M+  G+ K  G SWI + N +++F AG+  H   Q IY+ L  +  E
Sbjct: 646 AGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEE 705

Query: 622 ME 623
           ++
Sbjct: 706 IK 707



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 150/503 (29%), Positives = 254/503 (50%), Gaps = 25/503 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K    D A K+FD +P+ +VVSWNS+ISGY   G+    + +F + ++  +R   FTFS 
Sbjct: 66  KCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSN 125

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            LS          G+ IH  +  SGL    V+L NSLIDMY K G + +A  VF + +EL
Sbjct: 126 ALSVCGRTLDLRLGRLIHALITVSGLG-GPVLLTNSLIDMYCKCGRIDWARLVFESADEL 184

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--LRNLDKGKQ 267
           D +SWNSLI+G    G  +  L     M   G + + Y +   + AC      +++ GK 
Sbjct: 185 DSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKM 244

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY-- 325
           +   +VK+G   + +V +A +D ++K   LED+ ++F+ +   +  + N MI+ + +   
Sbjct: 245 LHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMET 304

Query: 326 ---GFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNA 381
               F   A+ LF  M    ++P+EFT S +L +   I   E G Q H+   K    S+ 
Sbjct: 305 MADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDE 364

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            + ++L+E+Y+ +GSI+   + F    K D+VSW ++++G  QNG+    L +F ELL  
Sbjct: 365 FIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFS 424

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID-LLCQAGQLG 500
           G  PD  T++ +L AC     V  G  + +     Y +  G  ++  I +  +C   + G
Sbjct: 425 GRKPDEFTISIMLSACANLAAVKSGEQIHA-----YAIKTGIGNFTIIQNSQICMYAKCG 479

Query: 501 KAIDITSTMPFQ----PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLL 555
             ID ++ M F+    P    W  ++ ++A +G  K   ++ E M    + P+ + +  +
Sbjct: 480 D-ID-SANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGV 537

Query: 556 TQAYAMRGRWEAIVRVKKVMRKN 578
             A +  G  E  +R  ++M+K+
Sbjct: 538 LVACSHGGLVEEGLRYFEIMKKD 560



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 204/398 (51%), Gaps = 37/398 (9%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S +  K +HG   KLG +    +G   LD Y++ G  +D  ++F  +P  N + +N  + 
Sbjct: 238 SIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIA 297

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G L+ + +       DE                    +++ A+ +F +MQ +G++PS FT
Sbjct: 298 GFLQMETMA------DE--------------------FANEAMYLFFEMQSRGMKPSEFT 331

Query: 150 FSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +L   ST+ +   GKQIH  + +  L  S+  +GN+L+++Y   G +      F + 
Sbjct: 332 FSSILKACSTIEAFECGKQIHAQIFKYNLQ-SDEFIGNALVELYSLSGSIEDGLKCFHST 390

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            +LD++SW SLI G   +G  E  L  F+ + +SG  PDE+TISI+++AC  L  +  G+
Sbjct: 391 PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGE 450

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A ++K G  + +I+ ++ I +++KC  ++ +   F++    D    +VMIS+  ++G
Sbjct: 451 QIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHG 510

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVA 384
             + A++LF+LM    I P   T   VL +      VE G + F  M    G   N   +
Sbjct: 511 CAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHS 570

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIM 419
           + ++++  + G + +  E F+ +D   + D V W +++
Sbjct: 571 ACIVDLLGRAGRL-AEAESFI-MDSGFEGDPVMWRSLL 606



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 9/312 (2%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +   S  HGK  H  MI++      + L N+L+ MY K G    A  +F  M + +++SW
Sbjct: 30  TRTGSLIHGKLAHMHMIKTCFK-PCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSW 88

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           NSLISG    G+    ++ F   R S    D++T S  ++ C +  +L  G+ + AL   
Sbjct: 89  NSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITV 148

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G     ++ ++ ID++ KC R++ +  +FE  D  D    N +I+ Y R G  +  L L
Sbjct: 149 SGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRL 208

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP---IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
              MLR  +    + L   L +        +E G   H  A+K G D + VV ++L++ Y
Sbjct: 209 LVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTY 268

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ-----NGRAAETLDVFEELLEEGLPPD 446
           AK G ++ +T+IF  +   ++V +N ++ G  Q     +  A E + +F E+   G+ P 
Sbjct: 269 AKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPS 328

Query: 447 RITLAAVLLACN 458
             T +++L AC+
Sbjct: 329 EFTFSSILKACS 340



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 137/286 (47%), Gaps = 36/286 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C + ++F+  K IH  +FK    +  ++GN  ++LYS  G+ +D L+ F   P+
Sbjct: 333 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPK 392

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + +SW                                S+I G+   G  +  L +F ++
Sbjct: 393 LDVVSW-------------------------------TSLIVGHVQNGQFEGGLTLFHEL 421

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P  FT SI+LS    +++   G+QIH   I++G+  +  ++ NS I MY K G 
Sbjct: 422 LFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIG-NFTIIQNSQICMYAKCGD 480

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F   +  DI+SW+ +IS     G  + A+D F  M+ SG +P+  T   V+ A
Sbjct: 481 IDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVA 540

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDS 300
           C+    +++G + F +  K   ++ ++  SA I DL  +  RL ++
Sbjct: 541 CSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEA 586



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
           Y G   D  T + ++   T+  +L  GK      +K  F     +L+  + ++ KC   +
Sbjct: 12  YLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETD 71

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI- 357
            + +LF+++ + +    N +IS Y + GF    + LF+     D+R  +FT S  LS   
Sbjct: 72  VAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG 131

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               +  G   H++   SG     ++ +SL++MY K G ID +  +F   D+ D VSWN+
Sbjct: 132 RTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC--NYGGFVDKG-MLVFSAMK 474
           ++ G  + G   E L +  ++L  GL  +   L + L AC  N+   ++ G ML   A+K
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 475 --EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
              +  V+ G      ++D   + G L  A  I   MP  P   ++ +++
Sbjct: 252 LGLDLDVVVG----TALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMI 296


>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 765

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/606 (28%), Positives = 312/606 (51%), Gaps = 51/606 (8%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           S+   L+ +CL   SF   + IH H+ K G +   +L +  + +Y++ G           
Sbjct: 74  SFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCG----------- 122

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                ++ A +VFD +   + V+W +++ GY       +A+ +F
Sbjct: 123 --------------------RMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLF 162

Query: 136 SKMQLQG-VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            +M L     PS +T +I L+  +S      G+Q+H  +I+  +   +  +GN+L  +Y 
Sbjct: 163 EEMLLHSECYPSNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDF-DTSIGNALCSLYT 221

Query: 192 KLG-VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS--GYSPDEYT 248
           K G  L      F  ++E D+ISW + IS C   G     +  F  M        P+EYT
Sbjct: 222 KCGGKLEVGLTAFRRIKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYT 281

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           ++  ++ C +++ L+ G QV AL  K+G+ SN  V ++ + L+ KC  + ++ RLF+ ++
Sbjct: 282 LTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMN 341

Query: 309 RWDYAVINVMISTYGR-----------YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +    N MI+ + +           Y  G  AL LF  + R  ++P  FT S VLS  
Sbjct: 342 DVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVC 401

Query: 358 -PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G Q H+  IK+GF S+ VV SS++ MY K GSI+ ++++F+++  R ++ W 
Sbjct: 402 SKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWT 461

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           T++ G  Q+G + + L++FE++   G+ P+ +T   VL AC   G V++    F  M++E
Sbjct: 462 TMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFNYFEIMQKE 521

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y + P  +HY C++D+L + GQ+ +A D+   M ++    IW +++      G+++L  +
Sbjct: 522 YKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIVGCLSQGNLELGCD 581

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            AE+++ L+      Y LL  AY   GR++ + RV+ +MR+  I ++   SWI IK+R+Y
Sbjct: 582 AAEKLLSLKPKDTETYKLLLNAYVSAGRYDDVSRVENIMREEKIGELKDWSWISIKDRVY 641

Query: 597 TFNAGE 602
           +F   +
Sbjct: 642 SFQTND 647


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 295/555 (53%), Gaps = 38/555 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ I EP+++ WN+M  G+A       AL ++  M   G+ P+ +TF  LL
Sbjct: 36  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLL 95

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL--------------- 196
            + + +     G+QIHG +++ G  L ++ +  SLI MY + G L               
Sbjct: 96  KSCAKSKAFREGQQIHGHVLKLGYDL-DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 197 ---------YYAFGVFLNMEEL-------DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                    Y + G   + +++       D++SWN++ISG   +G  + AL+ F  M  +
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T+  V++AC +  +++ G+QV +     GF SN  +++A IDL+ KC  +E +
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             LFE L   D    N +I  Y      + AL LFQ MLR    P + T+  +L +   +
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 334

Query: 360 PPVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             +E G   H    K   G  + +   +SL++MYAK G I+++ ++F  +  R L SWN 
Sbjct: 335 GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNA 394

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +GRA    D+F  + +  + PD IT   +L AC++ G +D G  +F +MKE+Y
Sbjct: 395 MIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDY 454

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL  +G   +A ++ +TM  +P   IW S+L+A  ++G+V+L E+ 
Sbjct: 455 KITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESY 514

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+ ++ ++  +P  Y LL+  YA  GRW  + +++ ++   G+ KV GCS I I + ++ 
Sbjct: 515 AQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHE 574

Query: 598 FNAGELQHHGGQKIY 612
           F  G+  H   ++IY
Sbjct: 575 FIIGDKFHPRNREIY 589



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHGH+ KLG++   Y+    + +Y + G  +D  ++FD+   ++
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      + +A K+FDEIP  DVVSWN+MISGYA  G +  ALE+F +M  
Sbjct: 154 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK 213

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             VRP   T   ++S  + +     G+Q+H  +   G   SN+ + N+LID+Y K G + 
Sbjct: 214 TNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFG-SNLKIVNALIDLYIKCGEVE 272

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG SP++ T+  ++ AC 
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 258 KLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  ++ G+   V+      G  + S   ++ ID+++KC  +E + ++F+ +     +  
Sbjct: 333 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 392

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G    A ++F  M + +I P + T   +LS+
Sbjct: 393 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSA 433



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 216/452 (47%), Gaps = 39/452 (8%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLID---MYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
           + IH  MI++GL  +N  L + LI+   +      L YA  VF  ++E +++ WN++  G
Sbjct: 4   RMIHAQMIKTGLHNTNYAL-SKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              S     AL  +  M   G  P+ YT   ++ +C K +   +G+Q+    +K+G+  +
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWD---YAVI---------------------- 315
             V ++ I ++ +  RLED+ ++F+Q    D   Y  +                      
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 316 ------NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
                 N MIS Y   G  + ALELF+ M++ ++RP E T+  V+S+      +E G Q 
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           HS     GF SN  + ++L+++Y K G ++++  +F  L  +D++SWNT++ G T     
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYA 487
            E L +F+E+L  G  P+ +T+ ++L AC + G ++ G  +   + K   GV     H  
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL- 546
            +ID+  + G +  A  +  ++      S W +++   A++G      ++  RM   ++ 
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
           P  + +  L  A +  G  +    + + M+++
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKED 453



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VFD I    + SWN+MI G+A  G ++ A ++FS+M+   + P   TF  
Sbjct: 370 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 429

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM         +     +ID+ G  G+   A  +   ME E
Sbjct: 430 LLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 489

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  EL 
Sbjct: 490 PDGVIWCSLLKACKMHGNVELG 511


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 180/613 (29%), Positives = 302/613 (49%), Gaps = 36/613 (5%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H      S  S ++  C    +  + +++H +  K    +  Y+G+  LD+Y R G    
Sbjct: 102 HAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVG---- 157

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                                       +D + +VF E+P  + V+W ++I+G    G  
Sbjct: 158 ---------------------------KIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRY 190

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNS 185
              L  FS+M         +TF+I L   +      +GK IH  +I  G  ++ + + NS
Sbjct: 191 KEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGF-VTTLCVANS 249

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           L  MY + G +     +F NM E D++SW SLI      G    A++ F  MR S   P+
Sbjct: 250 LATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPN 309

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E T + + +AC  L  L  G+Q+    + +G   +  V ++ + ++S C  L  +  LF+
Sbjct: 310 EQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQ 369

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEH 364
            +   D    + +I  Y + GFGE   + F  M +   +PT+F L+ +LS S  +  +E 
Sbjct: 370 GMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEG 429

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H++A+  G + N+ V SSL+ MY+K GSI  ++ IF + D+ D+VS   ++ G  +
Sbjct: 430 GRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAE 489

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G++ E +D+FE+ L+ G  PD +T  +VL AC + G +D G   F+ M+E Y + P +E
Sbjct: 490 HGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKE 549

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY C++DLLC+AG+L  A  + + M ++    +W ++L A    GD++     AER+++L
Sbjct: 550 HYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERILEL 609

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
                     L   Y+  G  E    V+K M+  G+ K  G S I IK+ +  F +G+  
Sbjct: 610 DPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRF 669

Query: 605 HHGGQKIYLVLRL 617
           H   + IY +L L
Sbjct: 670 HPQSEDIYNILEL 682



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 216/424 (50%), Gaps = 8/424 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL--QG 142
           N  LR L+ + NL  A +VFD++P  D+VSW S+I  Y +   SD AL +FS M++    
Sbjct: 44  NSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHA 103

Query: 143 VRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           V P     S++L      S+  +G+ +H   +++ L LS+V +G+SL+DMY ++G +  +
Sbjct: 104 VSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSL-LSSVYVGSSLLDMYKRVGKIDKS 162

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF  M   + ++W ++I+G  ++G  +  L  F  M  S    D YT +I + AC  L
Sbjct: 163 CRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGL 222

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           R +  GK +    +  GF++   V ++   ++++C  ++D + LFE +   D      +I
Sbjct: 223 RQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLI 282

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
             Y R G    A+E F  M    + P E T + + S+   +  +  G Q H   +  G +
Sbjct: 283 VAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLN 342

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  V++S+M+MY+  G++ S++ +F  +  RD++SW+TI+ G  Q G   E    F  +
Sbjct: 343 DSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWM 402

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + G  P    LA++L        ++ G  V  A+   +G+       + +I++  + G 
Sbjct: 403 RQSGTKPTDFALASLLSVSGNMAVIEGGRQVH-ALALCFGLEQNSTVRSSLINMYSKCGS 461

Query: 499 LGKA 502
           + +A
Sbjct: 462 IKEA 465


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/605 (28%), Positives = 301/605 (49%), Gaps = 60/605 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S         +H +LFK G ++   +    LDLY + G              
Sbjct: 248 SSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCG-------------- 293

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            +++TAL +F+     +VV WN ++  +        + E+F +M
Sbjct: 294 -----------------DVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQM 336

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+RP+ FT+  +L T +       G+QIH   +++G   S++ +   LIDMY K G 
Sbjct: 337 QTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFE-SDMYVSGVLIDMYSKYGW 395

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  V   ++E D++SW S+I+G     Y + AL  F  M+  G  PD   ++  I+ 
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  ++ + +G Q+ A     G+  +  + +A ++L+++C R+ ++   FE+++  D    
Sbjct: 456 CAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITW 515

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
           N ++S + + G  E AL++F  M +  ++   FT    LS S  +  ++ G Q H+  IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G      V ++L+ +Y K GS + +   F ++ +R+ VSWNTI+   +Q+GR  E LD 
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDF 635

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++ +EGL                          F +M ++YG+ P  +HYAC+ID+  
Sbjct: 636 FDQMKKEGLS------------------------YFKSMSDKYGIRPRPDHYACVIDIFG 671

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AGQL +A      MP      +W ++L A  ++ ++++ E  A+ +++L+      Y L
Sbjct: 672 RAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVL 731

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+ AYA+ G+W    +V+K+MR  G+ K  G SWI +KN ++ F  G+  H   ++IY  
Sbjct: 732 LSNAYAVTGKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNF 791

Query: 615 LRLLT 619
           L ++ 
Sbjct: 792 LAVIN 796



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 222/433 (51%), Gaps = 36/433 (8%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           + +     IH      G      +GN  +DLYS+ G           +P           
Sbjct: 56  RRWQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLV---------LP----------- 95

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                      A +VF+E+   D VSW +M+SGYA  G  + AL ++ +M   GV P+ +
Sbjct: 96  -----------ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPY 144

Query: 149 TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
             S +LS+ + A     G+ +H    + G   S   +GN+LI +Y + G    A  VF +
Sbjct: 145 VLSSVLSSCTKAELFAQGRSVHAQGYKQGFC-SETFVGNALITLYLRCGSFRLAERVFYD 203

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +++N+LISG     +GE AL+ F  M+ SG SPD  TIS ++ AC  L +L KG
Sbjct: 204 MPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKG 263

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ +   K G  S+ I+  + +DL+ KC  +E ++ +F   +R +  + N+++  +G+ 
Sbjct: 264 TQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQI 323

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVA 384
                + ELF  M    IRP +FT  C+L +      ++ G Q HS+++K+GF+S+  V+
Sbjct: 324 NDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVS 383

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             L++MY+K G ++ +  +   L ++D+VSW +++ G  Q+    + L  F+E+ + G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIW 443

Query: 445 PDRITLAAVLLAC 457
           PD I LA+ +  C
Sbjct: 444 PDNIGLASAISGC 456



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 212/442 (47%), Gaps = 36/442 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   + F   +++H   +K GF + T++GN  + LY R G+     ++F ++P 
Sbjct: 147 SSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPH 206

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +++N  + G  +  + + AL++F+E                               M
Sbjct: 207 RDTVTFNTLISGHAQCAHGEHALEIFEE-------------------------------M 235

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+ P   T S LL+  +S      G Q+H  + ++G+S S+ ++  SL+D+Y K G 
Sbjct: 236 QSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMS-SDYIMEGSLLDLYVKCGD 294

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F      +++ WN ++           + + F  M+ +G  P+++T   ++  
Sbjct: 295 VETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRT 354

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           CT    +D G+Q+ +LSVK GF S+  V    ID++SK   LE + R+ E L   D    
Sbjct: 355 CTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             MI+ Y ++ + + AL  F+ M +  I P    L+  +S    I  +  G Q H+    
Sbjct: 415 TSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYV 474

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG+  +  + ++L+ +YA+ G I  +   F +++ +D ++WN ++ G  Q+G   E L V
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
           F  + + G+  +  T  + L A
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSA 556



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 176/339 (51%), Gaps = 3/339 (0%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           +IH   I  GL    +V GN LID+Y K G++  A  VF  +   D +SW +++SG   +
Sbjct: 63  EIHAKAITRGLGKDRIV-GNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQN 121

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G GE AL  +  M  +G  P  Y +S V+++CTK     +G+ V A   K GF S + V 
Sbjct: 122 GLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVG 181

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A I L+ +C     + R+F  +   D    N +IS + +   GE ALE+F+ M    + 
Sbjct: 182 NALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLS 241

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T+S +L++   +  ++ G+Q HS   K+G  S+ ++  SL+++Y K G ++++  I
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F   ++ ++V WN I++   Q    A++ ++F ++   G+ P++ T   +L  C   G +
Sbjct: 302 FNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEI 361

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           D G  + S +  + G          +ID+  + G L KA
Sbjct: 362 DLGEQIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKA 399



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 12/245 (4%)

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++ A ++  G   + IV +  IDL+SK   +  + R+FE+L   D      M+S Y + G
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVAS 385
            GE AL L++ M R  + PT + LS VLSS     +   G   H+   K GF S   V +
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGN 182

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ +Y + GS   +  +F  +  RD V++NT++ G  Q       L++FEE+   GL P
Sbjct: 183 ALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSP 242

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFS-----AMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           D +T++++L AC   G + KG  + S      M  +Y +M G      ++DL  + G + 
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDY-IMEGS-----LLDLYVKCGDVE 296

Query: 501 KAIDI 505
            A+ I
Sbjct: 297 TALVI 301


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/599 (29%), Positives = 313/599 (52%), Gaps = 43/599 (7%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           +N ASL     ++  C + +   F  +IH    K+G N    L N  +D+Y +FG     
Sbjct: 39  LNVASLV---SVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFG----- 90

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     +++ +++VFD + E + VSWNS I  + + G+  
Sbjct: 91  --------------------------DVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYG 124

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
             L MF KM    V P   T S LL  +    S   G+++HG  I+  + L ++ + NSL
Sbjct: 125 DVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDL-DIFVANSL 183

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMY K G L  A  +F  M++ +++SWN++I+    +G    A      M+ SG  P+ 
Sbjct: 184 VDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNS 243

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T+  V+ AC ++ +L  GKQ+ A S++ G + +  + +A ID++SKC +L  +  +FE+
Sbjct: 244 ITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 303

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
            ++ D +  N +I  Y +  +   +L LF+ M    I     +    LS+   +   +HG
Sbjct: 304 SEKDDVSY-NTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHG 362

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H + ++     +  +++SL+++Y K G + ++++IF K+ K+D+ SWNT+++G   +
Sbjct: 363 KEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMH 422

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G+     ++FE +  +GL  D ++  AVL AC++GG VDKG   FS M  +  + P + H
Sbjct: 423 GQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMH 481

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YAC++DLL +AGQL K  +I   MPF     +W ++L A  I+G+++L +  AE + +L+
Sbjct: 482 YACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELK 541

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK--NRIYTFNAGE 602
                 Y+L+   YA  GRW    +++K+M+   + K    SW+  +  N++  F  G+
Sbjct: 542 PEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 600



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 224/452 (49%), Gaps = 34/452 (7%)

Query: 107 IPEPDVVSWNSMISGYASCG-YSDYALEMFSKMQLQGVRPSGFTFSIL-LSTVSSACHGK 164
           +PE DVVSWNS++S +   G + D    + S M+      SGF  ++  L +V  AC  +
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMR------SGFPLNVASLVSVVPACGTE 54

Query: 165 Q-------IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           Q       IH   ++ GL+ + V L N+L+DMYGK G +  +  VF  M E + +SWNS 
Sbjct: 55  QEEKFGLSIHALAVKVGLN-TMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSA 113

Query: 218 ISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           I GCF N+G+    L  F  M      P   T+S ++ A  +L + D G++V   S+K  
Sbjct: 114 I-GCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRA 172

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              +  V ++ +D+++K   LE +  +FEQ+   +    N MI+   + G    A  L  
Sbjct: 173 MDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVT 232

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M +    P   TL  VL +   +  ++ G Q H+ +I+ G   +  ++++L++MY+K G
Sbjct: 233 DMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCG 292

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +  +  IF + +K D VS+NT+++G +Q+    E+L +F+++   G+  D ++    L 
Sbjct: 293 QLSLARNIFERSEKDD-VSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALS 351

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGV-----MPGEEHYA-CIIDLLCQAGQLGKAIDITSTM 509
           AC         + VF   KE + V     + G    +  ++DL  + G L  A  I + +
Sbjct: 352 ACT-------NLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKI 404

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             +   S W +++    ++G + +   + E M
Sbjct: 405 TKKDVAS-WNTMILGYGMHGQIDIAFELFELM 435


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/560 (30%), Positives = 292/560 (52%), Gaps = 36/560 (6%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           +R LL +  +  A +VFD+IP PD     S I+ Y+    ++ AL  F  M    VR   
Sbjct: 37  IRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVC 96

Query: 148 FTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL----------- 193
           FT   +  + +S      GKQ+H  +IR G   S+V   N+LI+ Y K+           
Sbjct: 97  FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFH-SSVFCQNALINFYAKINDLGSAELIFD 155

Query: 194 --------------------GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
                               G +  A  +F  M +  I+SWN++IS    +G        
Sbjct: 156 GILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWII 215

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M+     P+E T++ V++ C KL +L+ G ++  L+      SN IV +A ++++ K
Sbjct: 216 FQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVK 275

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  ++D   +F+ + R D    + MI+ Y + G    ALELF+ M    I+P + TL  V
Sbjct: 276 CGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 354 LSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LS+   +  VE G +  S     G  SN  VAS+L+ MY+K G+I  + +IF KL +RD 
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           V+WN+++MGL  NG A + + ++  + E  + P+ IT   ++ AC + G V+ G+  F +
Sbjct: 396 VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRS 455

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M+ ++ + P  EH+ACI+DL C++G+L  A +    M  +P   IW ++L AS I+ +V+
Sbjct: 456 MRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVE 515

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           L E   +++++L+  +   Y +L+  YA  GRW+  ++V+K+M+   + K    SW+ ++
Sbjct: 516 LAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVE 575

Query: 593 NRIYTFNAGELQHHGGQKIY 612
           +R++ F  G+  H    ++Y
Sbjct: 576 DRVHKFLVGDTSHPRSDEVY 595



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 205/401 (51%), Gaps = 7/401 (1%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  + D  K +H  + + GF++  +  N  ++ Y++         +FD I  K+ I++
Sbjct: 106 CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAY 165

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  +    +S  +  A ++FD++ +  +VSWN+MIS YA  G       +F +MQ +   
Sbjct: 166 NCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCE 225

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + +LS  +       G +I        L  SN+++  ++++MY K G +     
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLG-SNMIVSTAMLEMYVKCGAVDDGRL 284

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M   D+++W+++I+G   +G    AL+ F +M+ +   P++ T+  V++AC +L +
Sbjct: 285 VFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGS 344

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           ++ G+++ +     G +SN  V SA + ++SKC  +  + ++F++L + D    N MI  
Sbjct: 345 VETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG 404

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDS 379
               GF E A+ L+  M   +++P   T   ++++      VE G + F SM        
Sbjct: 405 LAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISP 464

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           N    + +++++ ++G +  + E   +++ + ++V W T++
Sbjct: 465 NIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLL 505



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 41/234 (17%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +K A +    ++  S ++  C    S +  + I  ++   G  ++ Y+ +  L +YS+ G
Sbjct: 320 MKSAQIKPNDVTLVS-VLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCG 378

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                 Q+FD++PQ++ ++W                               NSMI G A 
Sbjct: 379 NIIKARQIFDKLPQRDNVTW-------------------------------NSMIMGLAI 407

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLS-NV 180
            G+++ A+ ++++M+   V+P+  TF  L++  + A H   G +   SM RS  ++S N+
Sbjct: 408 NGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSM-RSDHNISPNI 466

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELA 230
                ++D++ + G L  A+     ME E +++ W +L+S      N    ELA
Sbjct: 467 EHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELA 520


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/539 (29%), Positives = 305/539 (56%), Gaps = 15/539 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           ++ +A  VFD++   ++V+W  MI+ Y+  G  D A+++F ++ +    P  FT + LLS
Sbjct: 197 DIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLS 256

Query: 156 TVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
               AC        GKQ+H  +IRSGL+ S+V +G +L+DMY K   +  +  +F  M  
Sbjct: 257 ----ACVELEFFSLGKQLHSWVIRSGLA-SDVFVGCTLVDMYAKSAAVENSRKIFNTMLH 311

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW +LISG   S   + A+  F +M +   +P+ +T S V+ AC  L +   GKQ+
Sbjct: 312 HNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQL 371

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
              ++K+G  + + V ++ I+++++   +E + + F  L   +    N       +    
Sbjct: 372 HGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDS 431

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + +      +    +  + FT +C+LS    I  +  G Q H++ +KSGF +N  + ++L
Sbjct: 432 DESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNAL 489

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY+K G+ +++ ++F  +  R++++W +I+ G  ++G A + L++F E+LE G+ P+ 
Sbjct: 490 ISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNE 549

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T  AVL AC++ G +D+    F++M   + + P  EHYAC++DLL ++G L +AI+  +
Sbjct: 550 VTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFIN 609

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           +MPF     +W + L +  ++ + KL E+ A+++++ +   P  Y LL+  YA  GRW+ 
Sbjct: 610 SMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDD 669

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +  ++K M++  + K TG SWI + N+++ F+ G+  H   +KIY  L  L  ++++ G
Sbjct: 670 VAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLG 728



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 244/525 (46%), Gaps = 53/525 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C+   + +  K +H  L   G    + L N  + LYS+ G  ++ L +F  +  
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGH 102

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                         + D+VSW+++IS +A+      AL  F  M
Sbjct: 103 H-----------------------------KRDLVSWSAIISCFANNSMESRALLTFLHM 133

Query: 139 QLQGVR----PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            LQ  R    P+ + F+ LL + S+      G  I   ++++G   S+V +G +LIDM+ 
Sbjct: 134 -LQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFT 192

Query: 192 KLGV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
           K G+ +  A  VF  M+  ++++W  +I+     G  + A+D F  +  S Y+PD++T++
Sbjct: 193 KGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLT 252

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +++AC +L     GKQ+ +  ++ G  S+  V    +D+++K   +E+S ++F  +   
Sbjct: 253 SLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHH 312

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           +      +IS Y +    + A++LF  ML   + P  FT S VL +   +P    G Q H
Sbjct: 313 NVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLH 372

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
              IK G  +   V +SL+ MYA++G+++ + + F  L +++L+S+NT       N +A 
Sbjct: 373 GQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNT---AADANAKAL 429

Query: 430 ETLDVFEELLEE-GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
           ++ + F   +E  G+     T A +L      G + KG  + + +     V  G     C
Sbjct: 430 DSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALI-----VKSGFGTNLC 484

Query: 489 I----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           I    I +  + G    A+ + + M ++     W SI+   A +G
Sbjct: 485 INNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKHG 528



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 188/409 (45%), Gaps = 44/409 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C+  + F   K +H  + + G  +  ++G   +D+Y++    ++  ++F+ +  
Sbjct: 252 TSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLH 311

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +SW                                ++ISGY        A+++F  M
Sbjct: 312 HNVMSWT-------------------------------ALISGYVQSRQEQEAIKLFCNM 340

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V P+ FTFS +L   +S      GKQ+HG  I+ GLS  N V GNSLI+MY + G 
Sbjct: 341 LHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCV-GNSLINMYARSGT 399

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS--MRYSGYSPDEYTISIVI 253
           +  A   F  + E ++IS+N+      ++    L  D+ ++  + ++G     +T + ++
Sbjct: 400 MECARKAFNILFEKNLISYNTAA----DANAKALDSDESFNHEVEHTGVGASPFTYACLL 455

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +    +  + KG+Q+ AL VK GF +N  + +A I ++SKC   E ++++F  +   +  
Sbjct: 456 SGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVI 515

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSM 371
               +IS + ++GF   ALELF  ML   ++P E T   VLS+     +  E    F+SM
Sbjct: 516 TWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSM 575

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                        + ++++  ++G +  + E    +    D + W T +
Sbjct: 576 HYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFL 624



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 30/185 (16%)

Query: 85  NICLRGLL-----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N+C+   L     K  N + AL+VF+++   +V++W S+ISG+A  G++  ALE+F +M 
Sbjct: 482 NLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEML 541

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS-----------LID 188
             GV+P+  T+  +LS  S        H  +I       N +  N            ++D
Sbjct: 542 EIGVKPNEVTYIAVLSACS--------HVGLIDEAWKHFNSMHYNHSISPRMEHYACMVD 593

Query: 189 MYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSMRYSGYSP 244
           + G+ G+L  A     +M  + D + W + +  C    N+  GE A  +   +    + P
Sbjct: 594 LLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKI--LEREPHDP 651

Query: 245 DEYTI 249
             Y +
Sbjct: 652 ATYIL 656


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 181/616 (29%), Positives = 317/616 (51%), Gaps = 21/616 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNR----CLDLYSRFGTSDDVLQLFD 74
           S+ I +   F++F  +  IHG  ++  F+      NR    C  L SR    D+  ++F+
Sbjct: 3   SRAIFQRFRFRAFSISHVIHGKCYR-SFSVTVEFQNREVLICNHLLSR--RIDEAREVFN 59

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           ++P  +   +   + G  +S+ L  AL +FDE+P  DVVSWNSMISG   CG  + A+++
Sbjct: 60  QVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKL 119

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           F +M  + V        +  + + + C   GK      +   + + +    NS++  Y +
Sbjct: 120 FDEMPERSV--------VSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQ 171

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  +F  M   ++ISW ++I G   +     ALD F +M            + V
Sbjct: 172 FGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCV 231

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I AC        G QV  L +K+GFL    V ++ I  ++ C R+ DS ++F++      
Sbjct: 232 ITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQV 291

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSM 371
           AV   ++S Y      E AL +F  MLR  I P + T +  L+S   +  ++ G + H +
Sbjct: 292 AVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGV 351

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+K G +++A V +SL+ MY+ +G+++ +  +F+K+ K+ +VSWN+I++G  Q+GR    
Sbjct: 352 AVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWA 411

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-EHYACII 490
             +F +++     PD IT   +L AC++ GF++KG  +F  M      +  + +HY C++
Sbjct: 412 FVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMV 471

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           D+L + G+L +A ++   M  +P   +W ++L A  ++ DV   E  A  + +L   S  
Sbjct: 472 DILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSA 531

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  YA  GRW  + +++  M+KNGI K  G SW+ I+ + + F +G+  H    +
Sbjct: 532 AYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPH--CSR 589

Query: 611 IYLVLRLLTWEMEDEG 626
           IY  L  L  ++++ G
Sbjct: 590 IYEKLEFLREKLKELG 605


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 288/538 (53%), Gaps = 6/538 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K +  + A+K+FDE+P+ DV  WN++IS Y   G  + AL  F  M+  G  P   T + 
Sbjct: 153 KCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITT 212

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +S+ +       G++IH  ++ SG  + + V   +L+DMYGK G L  A  VF  M   
Sbjct: 213 AISSCARLLDLDRGREIHKELVNSGFRMDSFV-SAALVDMYGKCGQLEMAIEVFEQMPNK 271

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            +++WNS+I+G    G G   +  F  M   G  P   T++  + AC++   L +GK V 
Sbjct: 272 TVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVH 331

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              ++     +  + S+ +DL+ KC ++E +  +F+ + +      NVMIS Y   G   
Sbjct: 332 GYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLF 391

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF  M +  + P   T + VL++   +  +E G + H++ ++    +N VV  +L+
Sbjct: 392 DALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALL 451

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G+++ +  +F  L +RDLVSW +++     +GR  E L++F E+L+  + PDR+
Sbjct: 452 DMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRV 511

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A+L AC++ G VD G+  F+ M   YG++P  EHY+C+I LL +AG+L +A +I  +
Sbjct: 512 TFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQS 571

Query: 509 MP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            P       +  ++  A  ++ ++ L   +AE ++D        Y +L+  YA  G+W+ 
Sbjct: 572 NPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDE 631

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  V+  M+  G+ K  GCSWI I  +I  F   +  H+  + I  +L  LT  MEDE
Sbjct: 632 VRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHLEGIGNILSYLTSHMEDE 689



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 245/513 (47%), Gaps = 48/513 (9%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           KS    K +H  +  LG     Y+    + LY                     +S N+  
Sbjct: 17  KSLKQGKVLHQKVVTLGLQNDVYVCKNLISLY---------------------VSCNL-- 53

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSW-NSMISGYASCGYSDYALEMFSK-MQLQGVRPS 146
                    D A  VFD I  P  +S  N +++GY      D AL +F K M    ++P 
Sbjct: 54  --------FDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPD 105

Query: 147 GFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            +T+  +L     +     G+ IH  +++ GL + ++V+G+SL+ MY K      A  +F
Sbjct: 106 SYTYPSVLKACGGLRRVVLGQMIHTCLVKEGL-MVDIVVGSSLVGMYAKCNEFECAVKLF 164

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M + D+  WN++IS  + SG  E AL  F  MR  G+ PD  TI+  I++C +L +LD
Sbjct: 165 DEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLD 224

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           +G+++    V  GF  +S V +A +D++ KC +LE ++ +FEQ+        N MI+ YG
Sbjct: 225 RGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYG 284

Query: 324 RYGFGEVALELFQLMLREDIRP-----TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFD 378
             G G   ++LF+ M  E ++P     T   ++C  S+     +  G   H   I++   
Sbjct: 285 FKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSA----QLLEGKFVHGYIIRNRIQ 340

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  + SSLM++Y K G ++S+  IF  + K   VSWN ++ G    G+  + L +F E+
Sbjct: 341 PDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEM 400

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            +  + PD IT  +VL AC+    ++KG  + + + E   +   E     ++D+  + G 
Sbjct: 401 SKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVER-NLGNNEVVMGALLDMYAKCGA 459

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
           + +A  +   +P +   S W S++ A   +G V
Sbjct: 460 VEEAFGVFKCLPERDLVS-WTSMITAYGSHGRV 491



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 190/397 (47%), Gaps = 44/397 (11%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
            ++S C++L+D        D  + IH  L   GF   +++    +D+Y + G  +  +++
Sbjct: 212 TAISSCARLLD-------LDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEV 264

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F+++P K                                VV+WNSMI+GY   G     +
Sbjct: 265 FEQMPNKT-------------------------------VVAWNSMINGYGFKGDGISCI 293

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           ++F +M  +GV+P+  T +  L   S +     GK +HG +IR+ +   ++ L +SL+D+
Sbjct: 294 QLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQ-PDIFLNSSLMDL 352

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  +F  M +   +SWN +ISG    G    AL  F  M  S   PD  T 
Sbjct: 353 YFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITF 412

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + V+ AC++L  L+KG+++  L V+    +N +V+ A +D+++KC  +E++  +F+ L  
Sbjct: 413 TSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPE 472

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQ 367
            D      MI+ YG +G    ALELF  ML+ +++P   T   +LS+      V+ G   
Sbjct: 473 RDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYH 532

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
           F+ M    G        S L+ +  + G +  + EI 
Sbjct: 533 FNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEIL 569



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 153/331 (46%), Gaps = 42/331 (12%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +HG++ +       +L +  +DLY + G  +    +F  +P+   +SWN+ + G + 
Sbjct: 327 GKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVT 386

Query: 94  SDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
              L  AL++F E+     EPD +++ S++   A+C                        
Sbjct: 387 EGKLFDALRLFGEMSKSFVEPDAITFTSVL---AAC------------------------ 419

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
                S +++   G++IH  ++   L  + VV+G +L+DMY K G +  AFGVF  + E 
Sbjct: 420 -----SQLAALEKGREIHNLIVERNLGNNEVVMG-ALLDMYAKCGAVEEAFGVFKCLPER 473

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SW S+I+   + G    AL+ F  M  S   PD  T   +++AC+    +D G   F
Sbjct: 474 DLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHF 533

Query: 270 ALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW--DYAVINVMISTYGRYG 326
              + V G +      S  I L  +  RL ++  + +       D+ +++ + S    + 
Sbjct: 534 NQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHK 593

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             ++ +E+ + ++ +D  P + +   +LS++
Sbjct: 594 NLDLGVEIAENLIDKD--PDDSSTYIILSNM 622



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 135/282 (47%), Gaps = 5/282 (1%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-W 310
           ++ A    ++L +GK +    V +G  ++  V    I L+  CN  + +  +F+ ++  +
Sbjct: 9   LLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF 68

Query: 311 DYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQF 368
           + ++ N +++ Y R    + AL LF +LM    ++P  +T   VL +   +  V  G   
Sbjct: 69  EISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMI 128

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  +K G   + VV SSL+ MYAK    + + ++F ++  +D+  WNT++    Q+G+ 
Sbjct: 129 HTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKF 188

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            E L  F  +   G  PD +T+   + +C     +D+G  +   +    G        A 
Sbjct: 189 EEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNS-GFRMDSFVSAA 247

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
           ++D+  + GQL  AI++   MP +   + W S++      GD
Sbjct: 248 LVDMYGKCGQLEMAIEVFEQMPNKTVVA-WNSMINGYGFKGD 288


>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 189/665 (28%), Positives = 317/665 (47%), Gaps = 86/665 (12%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDF---------------AKTIHGHLFKLG 45
           MS Y     +      + S + D C     F F               A  +HG   K  
Sbjct: 98  MSGYFHNGELEATIKVFVSMVRDCCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFD 157

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F   T +    LD+Y + G  D   ++F   P  +   WN  + G  K  ++  AL++F 
Sbjct: 158 FGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFA 217

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH--- 162
           ++PE D VSWN+MIS  +  G+    L  F +M  QG RP+  T++ +LS  +S      
Sbjct: 218 KMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEW 277

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H  ++R    L +V  G  LIDMY K G L  A  VF  + E + +SW SLI G  
Sbjct: 278 GAHLHARIVRMEPCL-DVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVA 336

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G+ E AL  F  MR    + D++T++ V+  C   +++  G+Q+ A ++  G  S+  
Sbjct: 337 QAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVP 396

Query: 283 VLSATIDLFSKCNRL-------------------------------EDSVRLFEQLDRWD 311
           V +A + +++KC  +                               E +   F+++   +
Sbjct: 397 VANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERN 456

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               N M++TY + G+ E  L+++  MLRE ++    T S  +S+   +  +  G+Q  +
Sbjct: 457 VISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILA 516

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            A K GF SN  VA+S++ MY++ G I+ + ++F  +  ++LVSWN +M G  QNG+  +
Sbjct: 517 QAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRK 576

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            +++FE++L  G  PD+I+  +VL                                    
Sbjct: 577 VIEIFEKMLNIGNVPDQISYVSVL-----------------------------------S 601

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AGQL +A ++ + MPF+P  +IW ++L A  I+G+ KL E   + +++L    P 
Sbjct: 602 DLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPG 661

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL   Y+  G+ + +  V+K+MR  G+ K  GCSWI + NR++ F   +  H   + 
Sbjct: 662 SYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKD 721

Query: 611 IYLVL 615
           ++ +L
Sbjct: 722 VHRML 726



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 163/621 (26%), Positives = 276/621 (44%), Gaps = 86/621 (13%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S +S   A+ +H  L  +G  +  +L N  L++YS  G   D  ++F  I   N 
Sbjct: 1   MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 60

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
            SWN  + G   S  +  A K+F+++PE D VSWNSM+SGY   G  +  +++F  M   
Sbjct: 61  YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSM--- 117

Query: 142 GVR-----PSGFTFSILLSTVSSACHGK---QIHGSMIRSGLSLSNVV------------ 181
            VR     P  F+FS ++    S  + K   Q+HG   +    +   V            
Sbjct: 118 -VRDCCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCG 176

Query: 182 ------------------LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
                               NS+I  Y K G +  A  +F  M E D +SWN++IS    
Sbjct: 177 AMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQ 236

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G+G   L+ F  M   G+ P+  T + V++ACT + +L+ G  + A  V++    +   
Sbjct: 237 HGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYA 296

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
               ID+++KC RLE + ++F+ L   +      +I    + GF E AL LF  M    +
Sbjct: 297 GCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPV 356

Query: 344 RPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK--------- 393
              +FTL+ VL   +    +  G Q H+  I  G DS+  VA++L+ MYAK         
Sbjct: 357 ASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANH 416

Query: 394 ----------------------TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
                                  G ++ + E F K+ +R+++SWN+++    Q G   E 
Sbjct: 417 AFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEG 476

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS----AMKEEYGVMPGEEHYA 487
           L V+ ++L EG+  D IT +  + AC      D  +L+      A  E+ G         
Sbjct: 477 LKVYIQMLREGVKTDWITFSTSISAC-----ADLAVLILGNQILAQAEKLGFSSNVSVAN 531

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL-QL 546
            ++ +  + GQ+ +A  + S++  +   S W +++   A  G  +    + E+M+++  +
Sbjct: 532 SVVTMYSRCGQIEEAQKMFSSIVMKNLVS-WNAMMAGYAQNGQGRKVIEIFEKMLNIGNV 590

Query: 547 PSPLPY-SLLTQAYAMRGRWE 566
           P  + Y S+L+      G+ E
Sbjct: 591 PDQISYVSVLSDLLGRAGQLE 611


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 182/525 (34%), Positives = 286/525 (54%), Gaps = 14/525 (2%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           +NL  A  +FD I EP +VSWN +I  Y     S+ A+ +F K+    V P  FT   +L
Sbjct: 63  NNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVL 121

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              + + +   GKQIHG +++ G  +   VL +SL+ MY K G +     VF  ME+ D+
Sbjct: 122 KGCARLGALQEGKQIHGLVLKIGFGVDKFVL-SSLVSMYSKCGEIELCRKVFDRMEDKDV 180

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWNSLI G    G  ELAL+ F  M       D ++ +I+I+  +K   L+  + VF  
Sbjct: 181 VSWNSLIDGYARCGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDR 236

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
                 + NS+  +A I+ + K      +  LF+Q+        N MI+ Y R      A
Sbjct: 237 MP----IRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292

Query: 332 LELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L+LF++MLREDI P   T L  V ++  +  +  G   HS  +KSGF ++ V+ + L+EM
Sbjct: 293 LKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEM 352

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K GS+ S+  +F  + K+ L  W ++++GL  +G   +TL++F+E+   GL P  IT 
Sbjct: 353 YSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITF 412

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             VL AC++ GF +     F  M  +YG+ P  EHY C+ID+LC+AG L +A D    MP
Sbjct: 413 IGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMP 472

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +    IW S+L  S  +G++++ E  A+ ++DL   +   Y +L+  YA  G WE + +
Sbjct: 473 IKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQ 532

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           V+++M+K G+ K  GCS I  +  I+ F  G+  H   ++IY+ L
Sbjct: 533 VREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKL 577



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 192/439 (43%), Gaps = 53/439 (12%)

Query: 4   YLKKAHVNKASLSYCSQLID-------------RCLSFKSFDFAKTIHGHLFKLGFNAHT 50
           Y++    N A   +C  L D              C    +    K IHG + K+GF    
Sbjct: 90  YIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDK 149

Query: 51  YLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
           ++ +  + +YS+ G  +   ++FD +  K+ +SWN  + G  +   ++ AL++F+E+PE 
Sbjct: 150 FVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK 209

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSM 170
           D  SW  +I G +  G  + A ++F +M ++                             
Sbjct: 210 DSFSWTILIDGLSKSGKLEAARDVFDRMPIR----------------------------- 240

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
                   N V  N++I+ Y K G    A  +F  M E  +++WNS+I+G   +     A
Sbjct: 241 --------NSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKA 292

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           L  F  M     SP+  TI   ++A + + +L  G+ V +  VK GF ++ ++ +  I++
Sbjct: 293 LKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEM 352

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           +SKC  ++ ++R+F  + +        +I   G +G  E  LELF  M R  ++P   T 
Sbjct: 353 YSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITF 412

Query: 351 SCVLSSIPIPPVEHGSQ--FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
             VL++         +   F  M    G   +      L+++  + G ++ + +   ++ 
Sbjct: 413 IGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMP 472

Query: 409 -KRDLVSWNTIMMGLTQNG 426
            K + V W +++ G  ++G
Sbjct: 473 IKANKVIWTSLLSGSRKHG 491



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 99/206 (48%), Gaps = 10/206 (4%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYA--KTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            +Q H+++IK+   ++  V+S L+ +YA  +  ++  +  +F  + +  LVSWN ++   
Sbjct: 31  ANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCY 90

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMP 481
            +N R+ + + +F +LL +   PD  TL  VL  C   G + +G  +    +K  +GV  
Sbjct: 91  IENQRSNDAIALFCKLLCD-FVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGV-- 147

Query: 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +   + ++ +  + G++     +   M  +   S W S++   A  G+++L   + E M
Sbjct: 148 DKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVS-WNSLIDGYARCGEIELALEMFEEM 206

Query: 542 MDLQLPSPLPYSLLTQAYAMRGRWEA 567
            +        +++L    +  G+ EA
Sbjct: 207 PE---KDSFSWTILIDGLSKSGKLEA 229


>gi|357153150|ref|XP_003576355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Brachypodium distachyon]
          Length = 617

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 301/607 (49%), Gaps = 17/607 (2%)

Query: 34  AKTIHGHLFKLGFNAH------TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           A+ +H  L K G  +H      TY  N  L  Y+R G   D   L D +P    +S+N  
Sbjct: 7   ARKLHASLLKSGGVSHQGHGGDTYRWNLLLRAYTRGGGLADARALLDLMPSPTLVSYNTL 66

Query: 88  LRGLLKSDNL-DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
           L G   S  L + AL + D +PE D  SWN  ISG A  G    AL  F +M    V+P 
Sbjct: 67  LSGYAASSGLLEAALHLLDAMPERDAWSWNVAISGLARAGRLTDALRRFLEMTRGPVQPD 126

Query: 147 GFTFSILLSTVSSACHGK-----QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            FT+SI+         G      Q+H   +++G + ++  +G   + +Y  LG++  A  
Sbjct: 127 AFTYSIVSPCCCGGAGGGLESAWQVHARALKAG-AFADACVGTGFVRLYSGLGLIGDARK 185

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E D+++WN L+     SG     L     M      PDE+T + V+N   +   
Sbjct: 186 VFEGMPERDLVAWNVLLDCGMRSGEAGSCLQDLVLMIGGRVQPDEFTFATVVNGLAERFA 245

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
             +  QV ++ +K G L +  + ++ ++++ +C  ++ + +LFE +   D      +IS 
Sbjct: 246 GLEAMQVHSVILKSGHLKDLFLCNSLLNVYGRCGYVDLAKKLFEAMPEKDVVSWTALISG 305

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
               G    A + F  M      P  FT   V+SS   +  +  G Q H++ IK G +S 
Sbjct: 306 LVASGHQADAFKTFCRMQGAATVPNSFTFGSVVSSCACVNDLGGGRQCHALVIKHGLESI 365

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL- 439
             VASSL++MY+K   +D +T +F  + +RD+VSWN ++ GL QNGR+A  L++++E+L 
Sbjct: 366 PTVASSLLDMYSKCAEMDDATRMFDAMPRRDIVSWNAMICGLAQNGRSARALELYDEMLR 425

Query: 440 --EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
             +E + P+ +T   VL AC++ G V+KG + F+ M  ++ + P  EHY+C++DL  +AG
Sbjct: 426 LHQESITPNSVTCVGVLSACSHVGAVEKGCIYFTQMVNDFHIEPVPEHYSCLVDLFARAG 485

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
            L +A  I S  PF+    I  ++L     YG++ + + +A+R++     +     LL+ 
Sbjct: 486 LLDEAEGIISNSPFKHDAIILGTLLNGCRKYGNLDMAKRIAKRILVDDSDNASTIFLLSN 545

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            +     W     ++K +  +G  K  G SWI +   ++ F AG       + IY VLR 
Sbjct: 546 MFIANEEWNDASELRKAVISSGTRKFVGNSWIDVGGNVHCFRAGSSPDPQLESIYDVLRQ 605

Query: 618 LTWEMED 624
           L   M D
Sbjct: 606 LQLTMVD 612



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 34/222 (15%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         +  H  + K G  +   + +  LD+YS+    DD  ++FD +P+++
Sbjct: 337 VVSSCACVNDLGGGRQCHALVIKHGLESIPTVASSLLDMYSKCAEMDDATRMFDAMPRRD 396

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SWN  + GL ++     AL+++DE+                             ++  
Sbjct: 397 IVSWNAMICGLAQNGRSARALELYDEM----------------------------LRLHQ 428

Query: 141 QGVRPSGFTFSILLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNS-LIDMYGKLGVLY 197
           + + P+  T   +LS  S   A     I+ + + +   +  V    S L+D++ + G+L 
Sbjct: 429 ESITPNSVTCVGVLSACSHVGAVEKGCIYFTQMVNDFHIEPVPEHYSCLVDLFARAGLLD 488

Query: 198 YAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMR 238
            A G+  N   + D I   +L++GC    YG L + +  + R
Sbjct: 489 EAEGIISNSPFKHDAIILGTLLNGCRK--YGNLDMAKRIAKR 528


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/599 (29%), Positives = 313/599 (52%), Gaps = 43/599 (7%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           +N ASL     ++  C + +   F  +IH    K+G N    L N  +D+Y +FG     
Sbjct: 218 LNVASLV---SVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFG----- 269

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     +++ +++VFD + E + VSWNS I  + + G+  
Sbjct: 270 --------------------------DVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYG 303

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
             L MF KM    V P   T S LL  +    S   G+++HG  I+  + L ++ + NSL
Sbjct: 304 DVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDL-DIFVANSL 362

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMY K G L  A  +F  M++ +++SWN++I+    +G    A      M+ SG  P+ 
Sbjct: 363 VDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNS 422

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T+  V+ AC ++ +L  GKQ+ A S++ G + +  + +A ID++SKC +L  +  +FE+
Sbjct: 423 ITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 482

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
            ++ D +  N +I  Y +  +   +L LF+ M    I     +    LS+   +   +HG
Sbjct: 483 SEKDDVS-YNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHG 541

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H + ++     +  +++SL+++Y K G + ++++IF K+ K+D+ SWNT+++G   +
Sbjct: 542 KEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMH 601

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G+     ++FE +  +GL  D ++  AVL AC++GG VDKG   FS M  +  + P + H
Sbjct: 602 GQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMH 660

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YAC++DLL +AGQL K  +I   MPF     +W ++L A  I+G+++L +  AE + +L+
Sbjct: 661 YACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELK 720

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK--NRIYTFNAGE 602
                 Y+L+   YA  GRW    +++K+M+   + K    SW+  +  N++  F  G+
Sbjct: 721 PEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 779



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 230/459 (50%), Gaps = 34/459 (7%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCG-YSDYALEMFSKMQLQGVRPSGFTFSIL-LSTV 157
           A +VFDE+PE DVVSWNS++S +   G + D    + S M+      SGF  ++  L +V
Sbjct: 173 ARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMR------SGFPLNVASLVSV 226

Query: 158 SSACHGKQ-------IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
             AC  +Q       IH   ++ GL+ + V L N+L+DMYGK G +  +  VF  M E +
Sbjct: 227 VPACGTEQEEKFGLSIHALAVKVGLN-TMVNLANALVDMYGKFGDVEASMQVFDGMLEQN 285

Query: 211 IISWNSLISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            +SWNS I GCF N+G+    L  F  M      P   T+S ++ A  +L + D G++V 
Sbjct: 286 EVSWNSAI-GCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVH 344

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             S+K     +  V ++ +D+++K   LE +  +FEQ+   +    N MI+   + G   
Sbjct: 345 GYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAET 404

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  L   M +    P   TL  VL +   +  ++ G Q H+ +I+ G   +  ++++L+
Sbjct: 405 EAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALI 464

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G +  +  IF + +K D VS+NT+++G +Q+    E+L +F+++   G+  D +
Sbjct: 465 DMYSKCGQLSLARNIFERSEKDD-VSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAV 523

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGV-----MPGEEHYA-CIIDLLCQAGQLGKA 502
           +    L AC         + VF   KE + V     + G    +  ++DL  + G L  A
Sbjct: 524 SFMGALSACT-------NLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTA 576

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             I + +  +   S W +++    ++G + +   + E M
Sbjct: 577 SKIFNKITKKDVAS-WNTMILGYGMHGQIDIAFELFELM 614



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 196/397 (49%), Gaps = 8/397 (2%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-----HGKQIHGS 169
           WNS+    +S      AL +++ M    VRP   TF   L   ++A       G ++H S
Sbjct: 85  WNSLSRALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHAS 144

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
            +R G  L++V  GN+L+  Y   G    A  VF  M E D++SWNSL+S    +G    
Sbjct: 145 ALRRG-HLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHD 203

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A     SM  SG+  +  ++  V+ AC   +    G  + AL+VKVG  +   + +A +D
Sbjct: 204 ARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVD 263

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ K   +E S+++F+ +   +    N  I  +   GF    L +F+ M   ++ P   T
Sbjct: 264 MYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSIT 323

Query: 350 LSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           LS +L + + +   + G + H  +IK   D +  VA+SL++MYAK GS++ ++ IF ++ 
Sbjct: 324 LSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK 383

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
            R++VSWN ++  L QNG   E   +  ++ + G  P+ ITL  VL AC     +  G  
Sbjct: 384 DRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQ 443

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           +  A     G+M        +ID+  + GQL  A +I
Sbjct: 444 I-HAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNI 479


>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 273/503 (54%), Gaps = 43/503 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+D CL  KS    + IH  + K  F    ++ NR +D Y + G  DD  ++FD++P+
Sbjct: 23  AKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPE 82

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN  SWN  +  L+KS  LD   ++F  +PEPD  SWNS+I+G+A     + AL  F KM
Sbjct: 83  KNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFVKM 142

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G   + +TF   LS  +       G QIHG M++S   L +V +G++LID+Y K G 
Sbjct: 143 HRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLL-DVYMGSALIDIYSKCGF 201

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M E +++SWNSLI+    +G    AL+ F  M  SG+ PDE T++ V++A
Sbjct: 202 VDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSA 261

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLS-ATIDLFSKCNRLED--------------- 299
           C  L    +G ++ A  VK   L + ++LS A +D+++KC R+ +               
Sbjct: 262 CASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVS 321

Query: 300 ------------SVR----LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
                       SV+    LF ++   +    N +I+ Y + G  E AL LF+++ RE I
Sbjct: 322 ETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAI 381

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF------DSNAVVASSLMEMYAKTGS 396
            PT +T   +L++   +  ++ G Q H+  +K GF      +S+  V ++L++MY K GS
Sbjct: 382 CPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGS 441

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++    IF  + +RD VSWN +++G  QNG   E L +F ++L  G  PD +T+   L A
Sbjct: 442 VEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCA 501

Query: 457 CNYGGFVDKGMLVFSAMKEEYGV 479
           C++ G V +G   FS+M EEYG+
Sbjct: 502 CSHAGLVQEGRKHFSSMTEEYGL 524



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 172/368 (46%), Gaps = 36/368 (9%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D    + ++++C K ++L   +++ A  +K  F     + +  ID + KC   +D+ ++F
Sbjct: 18  DSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIF 77

Query: 305 EQLDRWDYAVINVMISTYGRYGF-------------------------------GEVALE 333
           +Q+   +    N ++ST  + GF                                E AL 
Sbjct: 78  DQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALN 137

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F  M R+     E+T    LS+   +  ++ G+Q H + +KS F  +  + S+L+++Y+
Sbjct: 138 YFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYS 197

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +D +  +F  + +R++VSWN+++    QNG + E L++F  ++E G  PD +TLA+
Sbjct: 198 KCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLAS 257

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           V+ AC       +G+ + + + +   +         ++D+  + G++ +A  +   MP +
Sbjct: 258 VVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIR 317

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
              S   S++   A    VK    +  +M++  + S   ++ L   Y   G  E  +R+ 
Sbjct: 318 NVVS-ETSMVSGYAKTASVKAARLLFTKMIERNVVS---WNALIAGYTQNGENEEALRLF 373

Query: 573 KVMRKNGI 580
           +++++  I
Sbjct: 374 RMLKREAI 381


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 294/555 (52%), Gaps = 38/555 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ I EP+++ WN+M  G+A       AL ++  M   G+ P+ +TF  LL
Sbjct: 51  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLL 110

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL--------------- 196
            + + +     G+QIHG +++ G  L ++ +  SLI MY + G L               
Sbjct: 111 KSCAKSKAFREGQQIHGHVLKLGYDL-DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 169

Query: 197 ---------YYAFGVFLNMEEL-------DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                    Y + G   + +++       D++SWN++ISG   +G  + AL+ F  M  +
Sbjct: 170 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T+  V++AC +  +++ G+QV +     GF SN  +++A IDL+ KC  +E +
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             LFE L   D    N +I  Y      + AL LFQ MLR    P + T+  +L +   +
Sbjct: 290 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 349

Query: 360 PPVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             +E G   H    K   G  + +   +SL++MYAK G I+++ ++F  +  R L SWN 
Sbjct: 350 GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNA 409

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +GRA    D+F  + +  + PD IT   +L AC++ G +D G  +F +MKE+Y
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDY 469

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL  +G   +A ++ +TM  +P   IW S+L+A  +Y +V+L E+ 
Sbjct: 470 KITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESY 529

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+ ++ ++  +P  Y LL+  YA  GRW  + +++ ++   G+ KV GCS I I + ++ 
Sbjct: 530 AQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHE 589

Query: 598 FNAGELQHHGGQKIY 612
           F  G+  H   ++IY
Sbjct: 590 FIIGDKFHPRNREIY 604



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHGH+ KLG++   Y+    + +Y + G  +D  ++FD+   ++
Sbjct: 109 LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 168

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      + +A K+FDEIP  DVVSWN+MISGYA  G +  ALE+F +M  
Sbjct: 169 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK 228

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             VRP   T   ++S  + +     G+Q+H  +   G   SN+ + N+LID+Y K G + 
Sbjct: 229 TNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFG-SNLKIVNALIDLYIKCGEVE 287

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG SP++ T+  ++ AC 
Sbjct: 288 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 347

Query: 258 KLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  ++ G+   V+      G  + S   ++ ID+++KC  +E + ++F+ +     +  
Sbjct: 348 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 407

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G    A ++F  M + +I P + T   +LS+
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSA 448



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 216/452 (47%), Gaps = 39/452 (8%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLID---MYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
           + IH  MI++GL  +N  L + LI+   +      L YA  VF  ++E +++ WN++  G
Sbjct: 19  RMIHAQMIKTGLHNTNYAL-SKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 77

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              S     AL  +  M   G  P+ YT   ++ +C K +   +G+Q+    +K+G+  +
Sbjct: 78  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 137

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWD---YAVI---------------------- 315
             V ++ I ++ +  RLED+ ++F+Q    D   Y  +                      
Sbjct: 138 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 197

Query: 316 ------NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
                 N MIS Y   G  + ALELF+ M++ ++RP E T+  V+S+      +E G Q 
Sbjct: 198 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 257

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           HS     GF SN  + ++L+++Y K G ++++  +F  L  +D++SWNT++ G T     
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYA 487
            E L +F+E+L  G  P+ +T+ ++L AC + G ++ G  +   + K   GV     H  
Sbjct: 318 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 377

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL- 546
            +ID+  + G +  A  +  ++      S W +++   A++G      ++  RM   ++ 
Sbjct: 378 SLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 436

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
           P  + +  L  A +  G  +    + + M+++
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMKED 468



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 133/306 (43%), Gaps = 40/306 (13%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID---LFSKCNRLEDSVRLFEQLD 308
           +++ C  L++L   + + A  +K G  + +  LS  I+   L    + L  ++ +FE + 
Sbjct: 8   LLHNCKTLQSL---RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQ 367
             +  + N M   +        AL L+  M+   + P  +T   +L S         G Q
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 124

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR----------------- 410
            H   +K G+D +  V +SL+ MY + G ++ + ++F +   R                 
Sbjct: 125 IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGY 184

Query: 411 --------------DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
                         D+VSWN ++ G  + G   E L++F+E+++  + PD  T+ +V+ A
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C     ++ G  V S + +++G     +    +IDL  + G++  A  +   + ++   S
Sbjct: 245 CAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVIS 303

Query: 517 IWESIL 522
            W +++
Sbjct: 304 -WNTLI 308



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 18/189 (9%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VFD I    + SWN+MI G+A  G ++ A ++FS+M+   + P   TF  
Sbjct: 385 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 444

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM         +     +ID+ G  G+   A  +   ME E
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 504

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYS---MRYSGYSPDEYTISIVI-------NACTK 258
            D + W SL+  C    Y  + L + Y+   ++    +P  Y +   I       N   K
Sbjct: 505 PDGVIWCSLLKAC--KMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAK 562

Query: 259 LRNL--DKG 265
           +R L  DKG
Sbjct: 563 IRALLNDKG 571


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 185/623 (29%), Positives = 326/623 (52%), Gaps = 52/623 (8%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S++Y + L   CL  + F F   +H    K GF    ++GN  + +YSR+          
Sbjct: 171 SVTYTTAL-SFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRW---------- 219

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY-AL 132
                                ++L  A KVFDE+P  D VSW++MI+GYA  G +   A+
Sbjct: 220 ---------------------EHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAI 258

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F +M  +GV+      +  LS      +   GKQIH   +++G   ++  +GN LI  
Sbjct: 259 LVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHE-THTSVGNVLIST 317

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K  ++  A  VF  + + ++ISW ++IS      Y E A+  F  MR  G  P++ T 
Sbjct: 318 YSKCEIIEDAKAVFELINDRNVISWTTMISL-----YEEGAVSLFNKMRLDGVYPNDVTF 372

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             +++A T    +++G  V  L +K  F+S   V ++ I +++K   ++D+ R+F +L  
Sbjct: 373 IGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPY 432

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP---VEHGS 366
            +    N +IS Y +    + ALE F   + E  +P E+T   VL++I       ++HG 
Sbjct: 433 REIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVLNAISAGEDISLKHGQ 491

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + HS  IK G + + +++ +L++MYAK GSI  S  +F +  K+   +W  ++ G  Q+G
Sbjct: 492 RCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTALISGYAQHG 551

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
                + +FEE+ +E + PD +   +VL AC+    VD G   F+ M +++ + P  EHY
Sbjct: 552 DYESVIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHY 611

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           +C++D+L +AG+L +A +I + +P  PG S  +S+L A   +G+V++ E +A  +M  + 
Sbjct: 612 SCMVDMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEP 671

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN------RIYTFNA 600
               PY L++  YA +G WE + +V+K MR+ G+ K  G SW+ + N       ++ F++
Sbjct: 672 LESGPYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSS 731

Query: 601 GELQHHGGQKIYLVLRLLTWEME 623
           G++ H   ++I+ + + +  EM+
Sbjct: 732 GDVSHPQSEEIFRMAKYMGAEMK 754



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 258/575 (44%), Gaps = 92/575 (16%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + IHG +   GF +H  + N  +++Y                                K
Sbjct: 92  GRQIHGFVISSGFVSHITVSNSLMNMYC-------------------------------K 120

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S  L+ A  VF  + +PD+VSWN+++SG+     S+ AL    +M L GV+    T++  
Sbjct: 121 SGQLERAFSVFQNLHDPDIVSWNTILSGFEK---SENALSFALRMNLNGVKFDSVTYTTA 177

Query: 154 LSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LS          G Q+H   ++ G    +V +GN+L+ MY +   L  A  VF  M   D
Sbjct: 178 LSFCLDGEEFLFGWQLHTLALKCGFK-GDVFVGNALVTMYSRWEHLVDARKVFDEMPSRD 236

Query: 211 IISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            +SW+++I+G    G  G  A+  F  M   G   D   I+  ++ C   RNL+ GKQ+ 
Sbjct: 237 RVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIH 296

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L+VK G  +++ V +  I  +SKC  +ED+  +FE ++  +      MIS Y      E
Sbjct: 297 CLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLY-----EE 351

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+ LF  M  + + P + T   +L +I I   VE G   H + IK+ F S   V +SL+
Sbjct: 352 GAVSLFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLI 411

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYAK   +  ++ +F++L  R+++SWN ++ G  QN    E L+ F   + E   P+  
Sbjct: 412 TMYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEY 470

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +VL A + G              E+  +  G+  ++ +I       ++G  +D    
Sbjct: 471 TFGSVLNAISAG--------------EDISLKHGQRCHSHLI-------KVGLNVD---- 505

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
            P   G     ++L   A  G ++ ++ V     +    S   ++ L   YA  G +E++
Sbjct: 506 -PIISG-----ALLDMYAKRGSIQESQRV---FNETSKQSQFAWTALISGYAQHGDYESV 556

Query: 569 VRVKKVMRKNGINK--------VTGCSWIGIKNRI 595
           +++ + M K  I          +T CS    +NR+
Sbjct: 557 IKLFEEMEKERIKPDAVIFLSVLTACS----RNRM 587



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 197/373 (52%), Gaps = 16/373 (4%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           +FD+ P P+  S+N ++  Y     +  +L  F      G+  +   F+++L+ + + C 
Sbjct: 29  LFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADEFTLVLA-LKACCG 87

Query: 163 ----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               G+QIHG +I SG  +S++ + NSL++MY K G L  AF VF N+ + DI+SWN+++
Sbjct: 88  FPKLGRQIHGFVISSGF-VSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTIL 146

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           SG   S   E AL     M  +G   D  T +  ++ C        G Q+  L++K GF 
Sbjct: 147 SGFEKS---ENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFK 203

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG-FGEVALELFQL 337
            +  V +A + ++S+   L D+ ++F+++   D    + MI+ Y + G  G  A+ +F  
Sbjct: 204 GDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQ 263

Query: 338 MLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M+RE ++     ++  LS       +E G Q H +A+K+G +++  V + L+  Y+K   
Sbjct: 264 MVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEI 323

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           I+ +  +F  ++ R+++SW T M+ L + G     + +F ++  +G+ P+ +T   +L A
Sbjct: 324 IEDAKAVFELINDRNVISWTT-MISLYEEG----AVSLFNKMRLDGVYPNDVTFIGLLHA 378

Query: 457 CNYGGFVDKGMLV 469
                 V++G++V
Sbjct: 379 ITIRNMVEQGLMV 391


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 322/659 (48%), Gaps = 83/659 (12%)

Query: 49  HTYLGNRCLDLY--SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           H +L  R + LY  SR   +   L   D  P    +S    +     +D L  A+  FD 
Sbjct: 58  HPHLTLRLIHLYTLSRDLPAAATLFCADPCP----VSATSLVAAYAAADRLPAAVSFFDA 113

Query: 107 IPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVS----- 158
           +P    D V  N++IS YA   ++  A+ +F  +   G +RP  ++F+ LLS        
Sbjct: 114 VPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNI 173

Query: 159 SACHGKQIHGSMIRSG----LSLSNVVLG-----------------------------NS 185
           S  H  Q+H S+++SG    LS+ N ++                               +
Sbjct: 174 SVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTT 233

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           ++  Y + G +  A  VF  ++    + WN++ISG  +SG    A + F  M       D
Sbjct: 234 MVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLD 293

Query: 246 EYTISIVINACTKLRNLDKGKQVFA--LSVKVGFLSNSI--VLSATIDLFSKCNRLEDSV 301
           E+T + V++AC  +     GK V    + ++  F+  +   V +A +  +SKC  +  + 
Sbjct: 294 EFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVAR 353

Query: 302 RLFEQLDRWDYAVIN-------------------------------VMISTYGRYGFGEV 330
           R+F+ +   D    N                               VM+S Y   GF E 
Sbjct: 354 RIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAED 413

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           AL+LF  M  E+++P ++T +  +++   +  ++HG Q H   ++ GF+ +    ++L+ 
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYA+ G++  +  +F+ +   D VSWN ++  L Q+G   E L++F+ ++ EG+ PDRI+
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              VL ACN+ G VD+G   F +MK ++G++PGE+HY  +IDLL +AG++G+A D+  TM
Sbjct: 534 FLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PF+P  SIWE+IL      GD++L  + A+++  +       Y LL+  Y+  G W    
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAA 653

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           RV+K+MR  G+ K  GCSWI   N+++ F  G+ +H    ++Y  L ++  +M   G V
Sbjct: 654 RVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYV 712



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 210/461 (45%), Gaps = 59/461 (12%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD- 67
           H+   S+ +C+QL                H  + K G      + N  + LY +  + + 
Sbjct: 169 HLPNISVRHCAQL----------------HCSVLKSGAGGALSVCNALVALYMKCESPEA 212

Query: 68  --DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
             D  ++ DE+P K+ ++W   + G ++  ++  A  VF+E+     V WN+MISGY   
Sbjct: 213 TRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHS 272

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIR---SGLSLSN 179
           G +  A E+F +M L+ V    FTF+ +LS  ++     HGK +HG +IR   + +  + 
Sbjct: 273 GMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAA 332

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS--------------- 224
           + + N+L+  Y K G +  A  +F NM   D++SWN+++SG   S               
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 225 ----------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
                           G+ E AL  F  MR     P +YT +  I AC +L  L  GKQ+
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQL 452

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               V++GF  ++   +A I ++++C  ++++  +F  +   D    N MIS  G++G G
Sbjct: 453 HGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASS 386
             ALELF  M+ E I P   +   VL++      V+ G + F SM    G        + 
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTR 572

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNG 426
           L+++  + G I  + ++   +      S W  I+ G   +G
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSG 613


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 173/602 (28%), Positives = 312/602 (51%), Gaps = 44/602 (7%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D  + +H    K G  +  ++ N  +++Y++ G                           
Sbjct: 174 DLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGL-------------------------- 207

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                ++ A  VF  +   D+VSWN++++G    G    AL++F   +      +  T+S
Sbjct: 208 -----VEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYS 262

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +++  ++  H    +Q+H S+++ G  S  NV+   +L+D Y K G L  A  VFL M 
Sbjct: 263 TVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM--TALMDAYNKAGQLDKALDVFLLMS 320

Query: 208 -ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              +++SW ++I GC  +G   LA   F  MR  G +P++ T S ++     +       
Sbjct: 321 GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEASFPP 376

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  +K  +     V +A +  +SK    E+++ +F+ +D+ D    + M++ Y + G
Sbjct: 377 QIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 436

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVA 384
               A   F  M    ++P EFT+S  + +   P   V+ G QFH+++IK        V+
Sbjct: 437 DCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVS 496

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           S+L+ MYA+ GSI+++  +F +   RDL+SWN+++ G  Q+G + + LDVF ++  EG+ 
Sbjct: 497 SALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGID 556

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D +T  +V++ C + G V++G   F  M  +YG+ P  +HYAC++DL  +AG+L + + 
Sbjct: 557 MDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMS 616

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   MPF  G +IW ++L A  ++ +V+L +  AE+++ L+      Y LL+  Y+  G+
Sbjct: 617 LIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGK 676

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           W+    V+K+M    + K  GCSWI IKN+++ F A +  H   ++IY  LR +T +++ 
Sbjct: 677 WKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQ 736

Query: 625 EG 626
           EG
Sbjct: 737 EG 738



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 239/504 (47%), Gaps = 55/504 (10%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVF+ + + +VV+W S+++GY   G     + +F +M+ +GV P+ FTFS +LS V+S  
Sbjct: 112 KVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQG 171

Query: 162 H---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               G+ +H   I+ G   S V + NSL++MY K G++  A  VF  ME  D++SWN+L+
Sbjct: 172 MVDLGQHVHAQSIKFGCC-STVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLM 230

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G   +G    AL  F+  R S     E T S VIN C  L++L   +Q+ +  +K GF 
Sbjct: 231 AGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFH 290

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQL 337
           S   V++A +D ++K  +L+ ++ +F  +      V    MI    + G   +A  LF  
Sbjct: 291 SYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSR 350

Query: 338 MLREDIRPTEFTLSCVL--SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           M  + + P + T S +L  S    PP     Q H+  IK+ ++    V ++LM  Y+K  
Sbjct: 351 MREDGVAPNDLTYSTILTVSEASFPP-----QIHAQVIKTNYECTPTVGTALMVSYSKLC 405

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S + +  IF  +D++D+VSW+ ++    Q G      + F ++   GL P+  T+++ + 
Sbjct: 406 STEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAID 465

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC                    GV  G + +A  I   C       A+ ++S        
Sbjct: 466 AC---------------ASPAAGVDLGRQFHAISIKHRCH-----DALCVSS-------- 497

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
               +++   A  G ++  + V ER  D  L   L ++ +   YA  G  +  + V + M
Sbjct: 498 ----ALVSMYARKGSIENAQCVFERQTDRDL---LSWNSMLSGYAQHGYSQKALDVFRQM 550

Query: 576 RKNGINK--------VTGCSWIGI 591
              GI+         + GC+  G+
Sbjct: 551 EVEGIDMDGLTFLSVIMGCAHAGL 574



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 184/390 (47%), Gaps = 37/390 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP- 77
           S +I+ C + K    A+ +H  + K GF+++  +    +D Y++ G  D  L +F  +  
Sbjct: 262 STVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSG 321

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +N +SW                                +MI G    G    A  +FS+
Sbjct: 322 SQNVVSW-------------------------------TAMIDGCIQNGDIPLAAALFSR 350

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           M+  GV P+  T+S +L TVS A    QIH  +I++    +  V G +L+  Y KL    
Sbjct: 351 MREDGVAPNDLTYSTIL-TVSEASFPPQIHAQVIKTNYECTPTV-GTALMVSYSKLCSTE 408

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC- 256
            A  +F  +++ D++SW+++++    +G    A + F  M   G  P+E+TIS  I+AC 
Sbjct: 409 EALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACA 468

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           +    +D G+Q  A+S+K        V SA + ++++   +E++  +FE+    D    N
Sbjct: 469 SPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWN 528

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKS 375
            M+S Y ++G+ + AL++F+ M  E I     T LS ++       VE G Q+  + ++ 
Sbjct: 529 SMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRD 588

Query: 376 -GFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            G        + ++++Y++ G +D +  + 
Sbjct: 589 YGITPTMDHYACMVDLYSRAGKLDETMSLI 618



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 12/299 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GKQ+H   +R G    ++ +G SL+DMY     +     VF  M + ++++W SL++G  
Sbjct: 74  GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G     +  F+ MR  G  P+ +T S V++       +D G+ V A S+K G  S   
Sbjct: 134 QAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVF 193

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ------ 336
           V ++ +++++KC  +E++  +F +++  D    N +++     G    AL+LF       
Sbjct: 194 VCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSI 253

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            ML E    T   L   L  + +       Q HS  +K GF S   V ++LM+ Y K G 
Sbjct: 254 TMLTESTYSTVINLCANLKHLGL-----ARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQ 308

Query: 397 IDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           +D + ++F+ +   +++VSW  ++ G  QNG       +F  + E+G+ P+ +T + +L
Sbjct: 309 LDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
           +P    G Q H++ ++ G D   + V +SL++MY    S+    ++F  + KR++V+W +
Sbjct: 68  VPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTS 127

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           ++ G  Q G   + + +F  +  EG+ P+  T ++VL      G VD G  V +
Sbjct: 128 LLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHA 181


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 169/531 (31%), Positives = 285/531 (53%), Gaps = 6/531 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLST-- 156
           A ++FDE+ E D ++WNSMI+G+   G  + AL+ F  +Q   ++P   +  SIL ++  
Sbjct: 166 AARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGR 225

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +    +GK+IH   +++ L  SN+ +GN+LIDMY K   + YA  VF  M   D+ISW +
Sbjct: 226 LGYLLNGKEIHAYAMKNWLD-SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTT 284

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+    +     AL     ++  G   D   I   + AC+ LR L   K+V   ++K G
Sbjct: 285 VIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG 344

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            LS+ ++ +  ID+++ C  +  + R+FE +   D      MIS Y   G    AL +F 
Sbjct: 345 -LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFY 403

Query: 337 LMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           LM    + P   TL S + ++  +  +  G + H    + GF       +SL++MYA  G
Sbjct: 404 LMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCG 463

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S++++ ++F+    + LV W T++     +GR    +++F  + ++ L PD IT  A+L 
Sbjct: 464 SLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLY 523

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G +++G  +   MK +Y + P  EHYAC++DLL +A  L +A     +M  +P  
Sbjct: 524 ACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTA 583

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
            +W + L A  I+ + KL E  A++++DL   SP  Y L++  +A  GRW+ +  V+  M
Sbjct: 584 EVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRM 643

Query: 576 RKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +  G+ K  GCSWI + N+++TF   +  H    KIY  L  +T ++E EG
Sbjct: 644 KGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEG 694



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 255/545 (46%), Gaps = 39/545 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IHG + K G+++  ++ N  + +Y++        +LFD + ++N                
Sbjct: 32  IHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERN---------------- 75

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                         DVVSWNS+IS Y+  G    AL +F +MQ  GV  + +T    L  
Sbjct: 76  --------------DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQA 121

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +     G +IH ++++S   L +V + N+L+ M+ + G + YA  +F  ++E D I+
Sbjct: 122 CEDSSFKKLGMEIHAAILKSNQVL-DVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I+G   +G    AL  F  ++ +   PDE ++  ++ A  +L  L  GK++ A ++
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K    SN  + +  ID++SKC  +  +  +F+++   D      +I+ Y +      AL+
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 334 LFQLMLREDIR-PTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           L + +  + +   T    S +L+   +  + H  + H   +K G  S+ ++ + ++++YA
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYA 359

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
             G+I+ +T +F  +  +D+VSW +++     NG A E L VF  + E  + PD ITL +
Sbjct: 360 DCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVS 419

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L A      ++KG  +   +  + G M        ++D+    G L  A  +       
Sbjct: 420 ILSAAASLSALNKGKEIHGFIFRK-GFMLEGSTVNSLVDMYACCGSLENAYKVF-ICTRS 477

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRV 571
               +W +++ A  ++G  K    +   M D +L P  + +  L  A +  G      R+
Sbjct: 478 KSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRL 537

Query: 572 KKVMR 576
            + M+
Sbjct: 538 LETMK 542



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 156/324 (48%), Gaps = 36/324 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IH +  K   +++  +GN  +D+YS+         +FD++  K+ IS          
Sbjct: 232 GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLIS---------- 281

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SI 152
                                W ++I+ YA       AL++  K+Q +G+        S 
Sbjct: 282 ---------------------WTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGST 320

Query: 153 LLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LL+     C  H K++HG  ++ G  LS++++ N +ID+Y   G + YA  +F +++  D
Sbjct: 321 LLACSGLRCLSHAKEVHGYTLKRG--LSDLMMQNMIIDVYADCGNINYATRMFESIKCKD 378

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SW S+IS   ++G    AL  FY M+ +   PD  T+  +++A   L  L+KGK++  
Sbjct: 379 VVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHG 438

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
              + GF+     +++ +D+++ C  LE++ ++F         +   MI+ YG +G G+ 
Sbjct: 439 FIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKA 498

Query: 331 ALELFQLMLREDIRPTEFTLSCVL 354
           A+ELF +M  + + P   T   +L
Sbjct: 499 AVELFSIMEDQKLIPDHITFLALL 522



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 128/241 (53%), Gaps = 3/241 (1%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           MR  G   D +T   V+ AC  + ++ +G ++  L +K G+ S   V ++ + +++KCN 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 297 LEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           +  + +LF+++ +R D    N +IS Y   G    AL LF+ M +  +    +TL   L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 356 SIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +      +  G + H+  +KS    +  VA++L+ M+ + G +  +  IF +LD++D ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AM 473
           WN+++ G TQNG   E L  F  L +  L PD ++L ++L A    G++  G  + + AM
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 474 K 474
           K
Sbjct: 241 K 241



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 44/299 (14%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++L  CS L  RCLS      AK +HG+  K G  +   + N  +D+Y+  G  +   ++
Sbjct: 319 STLLACSGL--RCLSH-----AKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRM 370

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F+ I  K                               DVVSW SMIS Y   G ++ AL
Sbjct: 371 FESIKCK-------------------------------DVVSWTSMISCYVHNGLANEAL 399

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F  M+   V P   T   +LS  +S      GK+IHG + R G  L    + NSL+DM
Sbjct: 400 GVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV-NSLVDM 458

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y   G L  A+ VF+      ++ W ++I+     G G+ A++ F  M      PD  T 
Sbjct: 459 YACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITF 518

Query: 250 SIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             ++ AC+    +++GK++   +  K          +  +DL  + N LE++    + +
Sbjct: 519 LALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSM 577


>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 168/558 (30%), Positives = 300/558 (53%), Gaps = 37/558 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           SF    + K IH H   LG   +  L    +++YSR                        
Sbjct: 232 SFIGLQYGKLIHAHAIVLGVKLNLVLKTALVNMYSR------------------------ 267

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
           C R       ++ A+KV    PE DV+ W ++ISG A       A+  F KM++ GV  S
Sbjct: 268 CQR-------IEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSAS 320

Query: 147 GFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-VLYYAFGV 202
            FT+  +LS   ++ S   G+QIH  +IR+GL   +V +GN+L+DMY K   ++ +   +
Sbjct: 321 NFTYLSMLSVCISILSLDLGRQIHSRVIRTGLE-DDVPVGNALVDMYMKCSCIVEHGLRM 379

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  ++  ++ISW SLI+G    G+ + +L+ F  MR  G  P+ +T+SIV+  C+ +++ 
Sbjct: 380 FRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKSP 439

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            +  ++    +K     + +V +A +D ++   R++D+ R+ + +++ D      + +  
Sbjct: 440 YQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRVVKDMNQRDSITYTSLATRL 499

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNA 381
            + G+ E+AL +   M   D++   F+L+C  S S  +  +E G Q H  ++KSG     
Sbjct: 500 NQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRIETGKQLHCYSLKSGLSCCL 559

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            VA+ L+++Y K G +  +   F ++ + D+VSWN ++ GL  NG  +  L  F+++   
Sbjct: 560 SVANGLIDLYGKYGLVHEARRAFTEITEPDVVSWNGLISGLASNGHISSALSAFDDMRLR 619

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ PD IT   VL  C++GG VD G+  F +M+E + V P  +HY C++D+L +AG+L +
Sbjct: 620 GIQPDSITFLLVLSTCSHGGLVDMGLQYFHSMREMHDVEPQSDHYVCLVDILGRAGRLEE 679

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A++I  TMP +P  SI++++L A +I+ ++ L E+VA R ++L    P  + LL + Y  
Sbjct: 680 AMNIIETMPLEPDASIYKTLLAACSIHRNMNLGEDVARRGLELNPLDPAFHLLLVKLYDD 739

Query: 562 RGRWEAIVRVKKVMRKNG 579
            GR++   + ++ +++ G
Sbjct: 740 CGRYDLGEKTRRSIKQKG 757



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 247/515 (47%), Gaps = 55/515 (10%)

Query: 10  VNKASLSY-----CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +NK  L +     CS+++  C + KS      IH  + KLG   H YL N  L LYS+  
Sbjct: 10  INKTELLHRLEDVCSKVVSLC-NLKSLKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCF 68

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           + +   Q FDE+P ++ +SW   L   +K++  + AL +FD                   
Sbjct: 69  SVEHARQFFDEMPCRDVVSWTGILSAHIKNERHEEALDIFD------------------- 109

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVV 181
                        M L G  P+ FTFS +L +   +    +GK+IH S I+ G   SN +
Sbjct: 110 ------------FMVLSGPYPNAFTFSSILRSCFALGDFSYGKRIHASSIKHGFE-SNQI 156

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           LG+SLID+Y +      A  +F  M+  D +SW ++I+ C  +G    AL  +  M  + 
Sbjct: 157 LGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQ 216

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            S +E+T  + + A +    L  GK + A ++ +G   N ++ +A ++++S+C R+ED++
Sbjct: 217 VSSNEFTF-VRLLAASSFIGLQYGKLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIEDAI 275

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIP 360
           ++ +    +D  +   +IS   +    + A+  F  M    +  + FT   +LS  I I 
Sbjct: 276 KVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVCISIL 335

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI-DSSTEIFVKLDKRDLVSWNTIM 419
            ++ G Q HS  I++G + +  V ++L++MY K   I +    +F  +   +++SW +++
Sbjct: 336 SLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLI 395

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMK 474
            G  ++G   ++L++F E+   G+ P+  TL+ VL  C+     Y      G ++    K
Sbjct: 396 AGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKSPYQTLKLHGHII--KTK 453

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
            +Y V+ G      ++D    +G++  A  +   M
Sbjct: 454 ADYDVVVGN----ALVDAYAGSGRVDDAWRVVKDM 484



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 212/454 (46%), Gaps = 40/454 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +   F + K IH    K GF ++  LG+  +DLYSRF +++D          
Sbjct: 124 SSILRSCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTED---------- 173

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A K+F  +   D VSW ++I+     G   +AL ++ +M
Sbjct: 174 ---------------------ACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEM 212

Query: 139 QLQGVRPSGFTFSILLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
               V  + FTF  LL+  S     +GK IH   I  G+ L N+VL  +L++MY +   +
Sbjct: 213 LEAQVSSNEFTFVRLLAASSFIGLQYGKLIHAHAIVLGVKL-NLVLKTALVNMYSRCQRI 271

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  V     E D+I W ++ISG   +   + A+  F+ M  SG S   +T   +++ C
Sbjct: 272 EDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVC 331

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL-EDSVRLFEQLDRWDYAVI 315
             + +LD G+Q+ +  ++ G   +  V +A +D++ KC+ + E  +R+F  +   +    
Sbjct: 332 ISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISW 391

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL---SSIPIPPVEHGSQFHSMA 372
             +I+ +  +GF + +L LF  M    ++P  FTLS VL   S+I  P      + H   
Sbjct: 392 TSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKSP--YQTLKLHGHI 449

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK+  D + VV ++L++ YA +G +D +  +   +++RD +++ ++   L Q G     L
Sbjct: 450 IKTKADYDVVVGNALVDAYAGSGRVDDAWRVVKDMNQRDSITYTSLATRLNQMGYHELAL 509

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            V   +    +  D  +L     A    G ++ G
Sbjct: 510 SVISHMFNADVKIDGFSLTCFFSASASLGRIETG 543



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 149/294 (50%), Gaps = 7/294 (2%)

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E   S V++ C  L++L +G  + +  +K+G   +  + +  + L+SKC  +E + + F+
Sbjct: 20  EDVCSKVVSLCN-LKSLKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFFD 78

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEH 364
           ++   D      ++S + +    E AL++F  M+     P  FT S +L S   +    +
Sbjct: 79  EMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFSY 138

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G + H+ +IK GF+SN ++ SSL+++Y++  S + + ++F  +D  D VSW T++    Q
Sbjct: 139 GKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQ 198

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
            G+ +  L ++ E+LE  +  +  T   +L A ++ G +  G L+  A     GV     
Sbjct: 199 AGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFIG-LQYGKLIH-AHAIVLGVKLNLV 256

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
               ++++  +  ++  AI ++   P +    +W +I+  S +  ++K  E VA
Sbjct: 257 LKTALVNMYSRCQRIEDAIKVSKLTP-EYDVILWTAII--SGLAQNMKFQEAVA 307


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/554 (30%), Positives = 289/554 (52%), Gaps = 36/554 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ I EP+++ WN+M  G+A       A++++  M   G+ P+ +TF  LL
Sbjct: 51  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLL 110

Query: 155 STVSS---ACHGKQIHGSMIRSGLSLS------------------------------NVV 181
            + +    +  G+QIHG +++ G  L                               +VV
Sbjct: 111 KSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVV 170

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
              +LI  Y   G +  A  +F  +   D++SWN++ISG  ++G  + ALD F  M  + 
Sbjct: 171 SYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTN 230

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE T+  V++AC +  ++  G+QV +     G  SN  +++A IDL+SKC  +E + 
Sbjct: 231 VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETAC 290

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LF+ L   D    N MI  Y      + AL LFQ MLR    P + T+  +L +   + 
Sbjct: 291 GLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLG 350

Query: 361 PVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  R L + N +
Sbjct: 351 AIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAM 410

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GRA    D+F  + + G+ PD IT   +L AC++ G +D G  +F +M + Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYK 470

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + P  EHY C+IDLL   G   +A ++ +TM  +P   IW S+L+A  ++G+V+L E+ A
Sbjct: 471 ITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFA 530

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           ++++ ++  +P  Y LL+  YA  GRW  +  ++ ++   G+ KV GCS I I + ++ F
Sbjct: 531 QKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 599 NAGELQHHGGQKIY 612
             G+  H   ++IY
Sbjct: 591 IIGDKFHPRNREIY 604



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 180/345 (52%), Gaps = 14/345 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K     + IHGH+ KLG+    Y+    + +Y + G   D  ++FD    ++
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      +++A K+FDEIP  DVVSWN++ISGYA  G +  AL++F +M  
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK 228

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             V+P   T    + TV SAC        G+Q+H  +   GL  SN+ + N+LID+Y K 
Sbjct: 229 TNVKPDEST----MVTVVSACAQSGSIQLGRQVHSWIDDHGLG-SNLKIVNALIDLYSKC 283

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A G+F  +   D+ISWN++I G  +    + AL  F  M  SG +P++ T+  ++
Sbjct: 284 GEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSIL 343

Query: 254 NACTKLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            AC +L  +D G+   V+      G  + S + ++ ID+++KC  +E + ++F  +    
Sbjct: 344 PACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRT 403

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +  N MI  +  +G    A ++F  M +  I P + T   +LS+
Sbjct: 404 LSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 448



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ +    + + N+MI G+A  G ++ A ++FS+M+  G+ P   TF  
Sbjct: 385 KCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVG 444

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G++I  SM ++      +     +ID+ G LG+   A  +   M  E
Sbjct: 445 LLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTME 504

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  EL 
Sbjct: 505 PDGVIWCSLLKACKMHGNVELG 526


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/603 (30%), Positives = 306/603 (50%), Gaps = 46/603 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG L KLGF + T LGN  +D+Y++ G                                
Sbjct: 26  LHGALLKLGFGSDTMLGNNLIDMYAKCG-------------------------------E 54

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ-LQGVRPSGFTFSILLS 155
           L  A +VF  +PE +VVSW +++ G+   G +   L +   M+ L  V P+ FT S  L 
Sbjct: 55  LRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLK 114

Query: 156 T---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
               V     G  IHG+ +R+G    +VV  NSL+ +Y K G +  A  VF      +++
Sbjct: 115 ACGVVGDMAAGVWIHGACVRAGFEGHHVV-ANSLVLLYSKGGRIGDARRVFDGTVFRNLV 173

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRY-----SGYSPDEYTISIVINACTKLRNLDKGKQ 267
           +WN++ISG  ++G+G  +L  F  M+        + PDE+T + ++ AC  L    +G Q
Sbjct: 174 TWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQ 233

Query: 268 VFALSVKVGF--LSNSIVLSATIDLFSKCN-RLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           V A  V  G    SN+I+  A +D++ KC   L  ++++F +L++ +      +I  + +
Sbjct: 234 VHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQ 293

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  + A+ELF       +R     LS V+        VE G Q H   +K+    +  V
Sbjct: 294 EGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSV 353

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           A+SL++MY K G  D +   F ++  R++VSW  ++ GL ++G   E + +FEE+  EG+
Sbjct: 354 ANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGV 413

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +   A+L AC++ G V++    FSA++ +  + P  EHYAC++DLL +AG+L +A 
Sbjct: 414 EPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAK 473

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           D+ +TMP  P   +W+++L A  ++ +V +     E ++ +   +P+ Y +L+  +A  G
Sbjct: 474 DLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAG 533

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGI-KNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
            W    RV+  MR+ G+ K  GCSW+ + K   + +  G+  H     I  VLR +   M
Sbjct: 534 DWRECQRVRGAMRRRGLRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTM 593

Query: 623 EDE 625
            + 
Sbjct: 594 RER 596



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           I+ ++ A      +  G Q+    +K+GF S++++ +  ID+++KC  L  +  +F  + 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGS 366
             +      ++  + R+G     L L   M    D+ P EFTLS  L +   +  +  G 
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H   +++GF+ + VVA+SL+ +Y+K G I  +  +F     R+LV+WN ++ G    G
Sbjct: 127 WIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAG 186

Query: 427 RAAETLDVFEELL-----EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
              ++L VF E+      EE   PD  T A++L AC   G   +G  V +AM
Sbjct: 187 HGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAM 238



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F   +  + +H +  K        + N  +D+Y + G +D+  + F E+P +N +SW   
Sbjct: 329 FALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAM 388

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QG 142
           + GL K  +   A+ +F+E+     EPD V++ +++S  +  G  +     FS ++  + 
Sbjct: 389 INGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRR 448

Query: 143 VRPSGFTFSILLSTVSSA 160
           +RP    ++ ++  +  A
Sbjct: 449 LRPRAEHYACMVDLLGRA 466


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 159/524 (30%), Positives = 288/524 (54%), Gaps = 12/524 (2%)

Query: 93  KSDNLDTALKVF-DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           + + ++ A+ VF D   E +V ++N++I+G+ + G +    + + +M+  GV P  FTF 
Sbjct: 22  RCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTFP 81

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            ++         ++IHG + + GL L NV +G++L++ Y K+     A  VF  + E D+
Sbjct: 82  CVVRACCEFMEVRKIHGCLFKMGLEL-NVFVGSALVNTYLKVDGTEDAEKVFEELPERDV 140

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + WN++I+G    G+   A+  F  M   G S   +T + +++  T + +++ G+ +  +
Sbjct: 141 VLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGI 200

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             K+G+ S   V +A ID++ KC   ED++ +FE ++  D    N +IS + +    +  
Sbjct: 201 VTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGT 260

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN-----AVVAS 385
           L LF  ML   + P   T++ VL +   +  + HG + H   I +G   N      ++ +
Sbjct: 261 LRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNN 320

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           ++M+MYAK G + ++  IF  +  +D+ SWN ++MG   +G   E LD+F  + E  + P
Sbjct: 321 AIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKP 380

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T   VL AC++ GFV +G    + M+ E+GV+P  EHY CIID+L +AG LG+A D+
Sbjct: 381 DVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDL 440

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL---PYSLLTQAYAMR 562
              +P +    +W ++L A  ++G+ +L   V E++  L+ P       Y L++  Y + 
Sbjct: 441 AQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLE-PKHCGSGSYILMSSLYGVV 499

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
           GR+E  + V++ M++  + K  GCSWI +K+ +Y F+ G+  HH
Sbjct: 500 GRYEEALEVRRTMKEQNVKKTPGCSWIELKDGLYVFSMGDRTHH 543



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 221/455 (48%), Gaps = 46/455 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IHG LFK+G   + ++G+  ++ Y                               LK 
Sbjct: 94  RKIHGCLFKMGLELNVFVGSALVNTY-------------------------------LKV 122

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D  + A KVF+E+PE DVV WN+MI+GY   G+ + A+ +F +M  +G+  S FT + +L
Sbjct: 123 DGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSIL 182

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S ++S     +G+ IHG + + G S S V + N+LIDMYGK      A  +F  + E D+
Sbjct: 183 SILTSMGDINNGRAIHGIVTKMGYS-SCVAVSNALIDMYGKCKHTEDALMIFEMINEKDL 241

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWNS+IS        +  L  F  M  S   PD  TI+ V+ AC+ L  L  G+++   
Sbjct: 242 FSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGY 301

Query: 272 SVKVGFLSNS-----IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +  G   N      ++ +A +D+++KC  ++++  +F+ +   D A  N+MI  Y  +G
Sbjct: 302 MIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHG 361

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS-MAIKSGFDSNAVVA 384
           +G  AL++F  M    I+P   T   VLS+      V  G  F + M ++ G        
Sbjct: 362 YGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHY 421

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRD-LVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           + +++M  + G +  + ++  ++   D L+ W  ++     +G  AE  +V  E + +  
Sbjct: 422 TCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGN-AELGNVVGEKITQLE 480

Query: 444 PPDRITLAAVLLACNYG--GFVDKGMLVFSAMKEE 476
           P    + + +L++  YG  G  ++ + V   MKE+
Sbjct: 481 PKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQ 515



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 96/195 (49%), Gaps = 3/195 (1%)

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF-EQLDRWDYAVINVMISTYGRYGFGEVA 331
           V  GF+     +++ I+++S+CN++E++V +F +     +    N +I+ +   G     
Sbjct: 2   VTSGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADG 61

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            + ++ M    + P +FT  CV+ +          + H    K G + N  V S+L+  Y
Sbjct: 62  FQFYKRMRSVGVMPDKFTFPCVVRA--CCEFMEVRKIHGCLFKMGLELNVFVGSALVNTY 119

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K    + + ++F +L +RD+V WN ++ G T+ G   + + VF+ + EEG+   R T  
Sbjct: 120 LKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTT 179

Query: 452 AVLLACNYGGFVDKG 466
           ++L      G ++ G
Sbjct: 180 SILSILTSMGDINNG 194


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 300/605 (49%), Gaps = 47/605 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   K F   K IHG     G     +L N  +D+Y                    
Sbjct: 116 VLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYC------------------- 156

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K + +D A  +F+   E D VSWNS+I+GYA  G  +  L++  KM  
Sbjct: 157 ------------KCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHH 204

Query: 141 QGVRPSGFTF-----SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            G+R + FT      S  L+  +   +GK +HG  ++ GL L ++V+G +L+DMY K G 
Sbjct: 205 TGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDL-DIVVGTALLDMYAKTGY 263

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNS-------GYGELALDQFYSMRYSGYSPDEYT 248
           L  A  +F      +++ +N++I+G   +        Y  L L  F  M+  G  P ++T
Sbjct: 264 LGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKL--FSQMQRQGIKPSDFT 321

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            S +I  C  +   + GKQ+ A   K    S+  + S  I+L+S     ED ++ F    
Sbjct: 322 FSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTP 381

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQ 367
           + D      MI+ Y + G  E AL LF  +L    +P EF ++ +LS+      E  G Q
Sbjct: 382 KLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQ 441

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H  A+K+G  + A+V +S + MYAK+G++DS+   F ++   D+VSW+ ++    Q+G 
Sbjct: 442 VHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGH 501

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           A + +++FE +   G+ P++IT   VL AC++GG V++G+  + +MK++Y +    +H  
Sbjct: 502 AKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCT 561

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           CI+DLL +AG+L  A +      F     +W ++L    IY D+   ++VAE++++L   
Sbjct: 562 CIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQ 621

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
               Y LL   Y   G      +++++M+  GI K  G SWI + N +++F  G++ H  
Sbjct: 622 ESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPM 681

Query: 608 GQKIY 612
            Q IY
Sbjct: 682 SQIIY 686



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 159/563 (28%), Positives = 263/563 (46%), Gaps = 58/563 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K  H H+ K  FN   +L N  L+LYS++G   +  +LFD + +++ IS+NI       
Sbjct: 28  GKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNI------- 80

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                   +ISGY   G+   A+ +FS+ ++  ++   F+++ +
Sbjct: 81  ------------------------LISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGV 116

Query: 154 LST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LS    +     GK IHG  I  GL    V L N LIDMY K   + +A  +F + +ELD
Sbjct: 117 LSACGQIKDFALGKVIHGLAIVCGLG-QQVFLTNLLIDMYCKCERIDHARLLFESSDELD 175

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC-TKLRNL-DKGKQV 268
            +SWNSLI+G    G  E  L     M ++G   + +T+   + +C   L N+   GK +
Sbjct: 176 NVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTL 235

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
              +VK G   + +V +A +D+++K   L D+++LF      +  + N MI+     GF 
Sbjct: 236 HGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIA-----GFI 290

Query: 329 EV----------ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGF 377
           +           AL+LF  M R+ I+P++FT S ++     I   E+G Q H+   K   
Sbjct: 291 QTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNI 350

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
            S+  + S+L+E+Y+  GS +   + F    K D+VSW T++ G  QNG+    L +F E
Sbjct: 351 QSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYE 410

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQA 496
           LL  G  PD   +  +L AC        G  V   A+K   G +   ++    I +  ++
Sbjct: 411 LLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQ--ISMYAKS 468

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLL 555
           G L  A  IT      P    W  ++ ++A +G  K   N+ E M    + P+ + +  +
Sbjct: 469 GNLDSA-KITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGV 527

Query: 556 TQAYAMRGRWEAIVRVKKVMRKN 578
             A +  G  E  +R  + M+K+
Sbjct: 528 LTACSHGGLVEEGLRYYESMKKD 550



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 158/313 (50%), Gaps = 9/313 (2%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           S   S+ HGK  H  MI++  +    +L N+ +++Y K G +  A  +F  M E  +IS+
Sbjct: 20  SKSGSSIHGKLAHAHMIKTAFNPCLFLL-NNFLNLYSKWGEMGNAQKLFDRMSERSVISY 78

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N LISG    G+   A+  F   R +    D+++ + V++AC ++++   GK +  L++ 
Sbjct: 79  NILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIV 138

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G      + +  ID++ KC R++ +  LFE  D  D    N +I+ Y R G  E  L+L
Sbjct: 139 CGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKL 198

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPI---PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
              M    +R   FTL   L S  +     V +G   H   +K G D + VV ++L++MY
Sbjct: 199 LVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMY 258

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR-----AAETLDVFEELLEEGLPPD 446
           AKTG +  + ++F     +++V +N ++ G  Q        A E L +F ++  +G+ P 
Sbjct: 259 AKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPS 318

Query: 447 RITLAAVLLACNY 459
             T ++++  CN+
Sbjct: 319 DFTFSSIIKICNH 331



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 48/292 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C   ++F++ K IH H+ K    +  ++G+  ++LYS  G+++D L+ F+  P+
Sbjct: 323 SSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPK 382

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + +SW   + G  ++   ++AL +F E+                               
Sbjct: 383 LDIVSWTTMIAGYAQNGQFESALALFYELLA----------------------------- 413

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P  F  + +LS    V++   G+Q+HG  +++G+    +V  NS I MY K G 
Sbjct: 414 --SGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIV-QNSQISMYAKSGN 470

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  ++  D++SW+ +I      G+ + A++ F  M+  G  P++ T   V+ A
Sbjct: 471 LDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTA 530

Query: 256 CTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           C+        LR  +  K+ + + + V         +  +DL S+  RL D+
Sbjct: 531 CSHGGLVEEGLRYYESMKKDYDMKINVKH------CTCIVDLLSRAGRLLDA 576


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 319/614 (51%), Gaps = 15/614 (2%)

Query: 26  LSFKSFDFAKTIHGHLFKLGFNA----HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           L  +   F    H  L  L F      H  L  + L L  +  + + + Q+  ++   + 
Sbjct: 2   LKTRPTSFLPPYHLPLSNLNFQTQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSI 61

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS-DYALEMFSKMQL 140
              N  L  ++   +L  A  VF+++ +P++ ++N M+ G A+     D+ +E++ K++ 
Sbjct: 62  PKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKS 121

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++ + FT+  L      V    HGK  H  + ++GL     V  +SLI MY + G + 
Sbjct: 122 LGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYV-NHSLITMYARCGEMG 180

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           +A  VF  M + D++SWNS+ISG    G+ + A+  F  MR  G+ PDE T+  V+ AC 
Sbjct: 181 FARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACG 240

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +L  G+ V    ++     NS + SA ID++ KC  L  + R+F+ +   D    N 
Sbjct: 241 DLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNA 300

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +I+ Y + G    A+ LF  M      P   T+  VLS+   I  ++ G    + A + G
Sbjct: 301 IITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKG 360

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +  VAS+L++MYAK GS+D +  +F  +  ++ VSWN ++  L  +G+A E L +F 
Sbjct: 361 LQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFR 420

Query: 437 ELLEEG--LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
            + ++   + P+ IT   VL AC + G VD+G  +F +M   +G++P  EHY+C++DL  
Sbjct: 421 RMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCA 480

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A D+   MP +P   +  S+L A     +  + E V +  ++++L +   Y +
Sbjct: 481 RAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVI 540

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
            ++ YA   RW+   +++ +MR+ G++K  GCSWI I   ++ F+AG+  H+    IY  
Sbjct: 541 SSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMNIY-- 598

Query: 615 LRLLTWEMEDEGCV 628
            +LL  EM+ EG +
Sbjct: 599 -QLLNEEMKREGYI 611



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 210/428 (49%), Gaps = 52/428 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + +     K  H  +FK G +   Y+ +  + +Y+R G      ++FDE+  ++ +SW
Sbjct: 138 CGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSW 197

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          NSMISGY+  G++  A+ +F +M+ +G  
Sbjct: 198 -------------------------------NSMISGYSKMGFTKEAIGLFMEMREEGFE 226

Query: 145 PSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           P   T    L +V  AC        G+ + G ++   + + N  +G++LIDMYGK G L 
Sbjct: 227 PDEMT----LVSVLGACGDLGDLGLGRWVEGFVLEKKMEV-NSYMGSALIDMYGKCGDLI 281

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF +M   D+++WN++I+G   +G    A+  F  MR +G  PD  T+  V++AC+
Sbjct: 282 SARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACS 341

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  LD GK V   + + G   +  V SA ID+++KC  L+D+VR+FE +   +    N 
Sbjct: 342 TIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNA 401

Query: 318 MISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSMAI 373
           MIS    +G  + AL LF+ M +++  ++P + T   VLS+ +    V+ G Q F SM +
Sbjct: 402 MISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNL 461

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETL 432
             G        S ++++ A+ G +  + ++  K+  K D +   + ++G  Q  R A   
Sbjct: 462 SFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGS-LLGACQRRRNA--- 517

Query: 433 DVFEELLE 440
           DV E +++
Sbjct: 518 DVGERVIQ 525



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 145/326 (44%), Gaps = 39/326 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C         + + G + +     ++Y+G+  +D+Y + G      ++FD +P K+ ++W
Sbjct: 239 CGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTW 298

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               ++I+GYA  G S+ A+ +F+ M+  G  
Sbjct: 299 N-------------------------------AIITGYAQNGASNEAIVLFNGMREAGPH 327

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +L   ST+ +   GK +       GL   +V + ++LIDMY K G L  A  
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQ-HDVYVASALIDMYAKCGSLDDAVR 386

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISIVINACTKL 259
           VF +M   + +SWN++IS     G  + AL  F  M        P++ T   V++AC   
Sbjct: 387 VFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHA 446

Query: 260 RNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINV 317
             +D+G+Q+F ++++  G +      S  +DL ++   L ++  L +++  + D  V+  
Sbjct: 447 GLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGS 506

Query: 318 MISTYGRYGFGEVALELFQLMLREDI 343
           ++    R    +V   + QL L  ++
Sbjct: 507 LLGACQRRRNADVGERVIQLFLEMEL 532



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 71/289 (24%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C +  + D  K +  H  + G     Y+ +  +D+Y++ G+ DD +++F+ +P K
Sbjct: 335 EVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHK 394

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N +SW                               N+MIS  A  G +  AL +F +M 
Sbjct: 395 NEVSW-------------------------------NAMISALAFHGQAQEALSLFRRMS 423

Query: 140 LQG--VRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
                V+P+  TF  +LS    A     G+Q+  SM  S   +  V   + ++D+  + G
Sbjct: 424 KDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAG 483

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +LY A+ +   M                                     PDE  +  ++ 
Sbjct: 484 LLYEAWDLIKKMPG----------------------------------KPDEIVLGSLLG 509

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           AC + RN D G++V  L +++  LSNS     +  +++   R +DS ++
Sbjct: 510 ACQRRRNADVGERVIQLFLEME-LSNSGNYVISSKIYANMRRWDDSAKM 557


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 322/660 (48%), Gaps = 84/660 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++ +C    +      +H  L   G +   +LG+R L++Y + G  +D          
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVED---------- 63

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY--ALEMFS 136
                                A ++FD++ E +V SW +++  Y  CG  DY   +++F 
Sbjct: 64  ---------------------ARRMFDKMSERNVFSWTAIMEMY--CGLGDYEETIKLFY 100

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            M  +GVRP  F F  +    S   +   GK ++  M+  G   ++ V G S++DM+ K 
Sbjct: 101 LMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG-SILDMFIKC 159

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A   F  +E  D+  WN ++SG  + G  + AL+ F  M   G  P+  TI+  +
Sbjct: 160 GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAV 219

Query: 254 NACTKLRNLDKGKQVFALSVKVGFL-SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           +ACT L  L  G+++    +KV  L S+ +V ++ +D ++KC  +E + R F  + + D 
Sbjct: 220 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 279

Query: 313 AVINVMISTYG--RYGFGEVALELFQLM-------------------------------- 338
              N M++  G  +YG G+ ALE FQ M                                
Sbjct: 280 VSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSV 339

Query: 339 -----LRE-DIRPTEFTLSCVLSSIP----IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
                LRE ++   E     ++S++P    +  +  G + H   I+ G D+   + +SL+
Sbjct: 340 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 399

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY + GSI  S  IF  + +RDLVSWN ++     +G   + +++F++    GL P+ I
Sbjct: 400 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHI 459

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   +L AC++ G +++G   F  MK EY + P  E YAC++DLL +AGQ  + ++    
Sbjct: 460 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 519

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF+P  ++W S+L A  I+ +  L E  A  + +L+  S   Y L+   Y+  GRWE  
Sbjct: 520 MPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDA 579

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +++ +M++ G+ K  GCSWI +K ++++F  G+  H   ++I   +  L +++++ G V
Sbjct: 580 AKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYV 639


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 180/618 (29%), Positives = 305/618 (49%), Gaps = 59/618 (9%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           +L +C +   RC      DF K +HG +   G +   +L N  +D+YS+ G         
Sbjct: 155 ALGFCGE---RC----DLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCG--------- 198

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                  LD A+ +FD   E D VSWNS+ISGY   G ++  L 
Sbjct: 199 ----------------------KLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLN 236

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC----------HGKQIHGSMIRSGLSLSNVVLG 183
           + +KM   G++ + +     L +V  AC           G  IH    + G+   ++V+ 
Sbjct: 237 LLAKMHRAGLKLTTYA----LGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEF-DIVVR 291

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN-----SGYGELALDQFYSMR 238
            +L+DMY K G L  A  +F  M   +++++N++ISG              A   F  M+
Sbjct: 292 TALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQ 351

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G  P   T S+V+ AC+  + L+ G+Q+ AL  K  F S+  + SA I+L++     E
Sbjct: 352 RRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTE 411

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           D ++ F    + D A    +I  + +    E A +LF+ +    IRP E+T+S ++S+  
Sbjct: 412 DGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACA 471

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               +  G Q    AIKSG D+   V +S + MYAK+G++  + ++F+++   D+ +++ 
Sbjct: 472 DFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQNPDVATYSA 531

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++  L Q+G A + L++FE +   G+ P++     VL+AC +GG V  G+  F  MK  Y
Sbjct: 532 MISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCHGGLVTHGVNYFQTMKNSY 591

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           G+ P E+H+ C+ DLL + G+L  A ++  +  FQ    +W ++L +  +Y D  + + V
Sbjct: 592 GINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMWRALLSSCRVYKDSVIGKRV 651

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           AER+M+L+  +   Y LL   Y   G   +   V+++MR  G+ K    SWI + N+ ++
Sbjct: 652 AERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVLGNQTHS 711

Query: 598 FNAGELQHHGGQKIYLVL 615
           F   +  H   Q IY +L
Sbjct: 712 FAVADWSHPSSQMIYTML 729



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 226/465 (48%), Gaps = 23/465 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A ++FD +PE +++S+NS+ISGY   G+ + A+E+F + +   ++   FT++ 
Sbjct: 95  KCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAG 154

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L      C    GK +HG ++ +GLS   V L N LIDMY K G L  A  +F    E 
Sbjct: 155 ALGFCGERCDLDFGKLLHGLVVVNGLS-QQVFLINVLIDMYSKCGKLDQAMSLFDRCNER 213

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN---LDKGK 266
           D +SWNSLISG    G  E  L+    M  +G     Y +  V+ AC    N   ++KG 
Sbjct: 214 DQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGM 273

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +   + K+G   + +V +A +D+++K   L+++++LF  +   +    N MIS + +  
Sbjct: 274 AIHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMD 333

Query: 327 -----FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSN 380
                    A +LF  M R  + P+  T S VL +      +E+G Q H++  K+ F S+
Sbjct: 334 DITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSD 393

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             + S+L+E+YA  GS +   + F    K+D+ SW +I+    QN +     D+F +L  
Sbjct: 394 EFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFS 453

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQA 496
             + P+  T++ ++ AC      D   L      + Y +  G + Y  +    I +  ++
Sbjct: 454 SPIRPEEYTVSLMMSAC-----ADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKS 508

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           G +  A  +   +   P  + + +++ + A +G      N+ E M
Sbjct: 509 GNMPLANKVFIEVQ-NPDVATYSAMISSLAQHGSAHDALNIFESM 552



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 43/393 (10%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK  HG M++S L+    +L N+L++MY K   L +A  +F  M E +IIS+NSLISG  
Sbjct: 67  GKLAHGHMVKSSLNPCLYLL-NNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYT 125

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G+ E A++ F   R      D++T +  +  C +  +LD GK +  L V  G      
Sbjct: 126 QVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVF 185

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           +++  ID++SKC +L+ ++ LF++ +  D    N +IS Y R G  E  L L   M R  
Sbjct: 186 LINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAG 245

Query: 343 IRPTEFTLSCVLSSIPIP----PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
           ++ T + L  VL +  I      +E G   H  A K G + + VV ++L++MYAK GS+ 
Sbjct: 246 LKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMYAKNGSLK 305

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQ-----NGRAAETLDVFEELLEEGLPPDRITLAAV 453
            + ++F  +  +++V++N ++ G  Q     +  ++E   +F E+   GL P   T + V
Sbjct: 306 EAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVV 365

Query: 454 LLACNYGGFVDKGMLVF---------------SAMKEEYGVMPGEE-------------- 484
           L AC+    ++ G  +                SA+ E Y +M   E              
Sbjct: 366 LKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDI 425

Query: 485 -HYACIIDLLCQAGQLGKAIDITSTM---PFQP 513
             +  IID   Q  QL  A D+   +   P +P
Sbjct: 426 ASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRP 458



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 144/303 (47%), Gaps = 20/303 (6%)

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ KC  L  + +LF+++   +    N +IS Y + GF E A+ELF     ++++  +FT
Sbjct: 92  MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFT 151

Query: 350 LSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
            +  L        ++ G   H + + +G      + + L++MY+K G +D +  +F + +
Sbjct: 152 YAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCN 211

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG---GFVDK 465
           +RD VSWN+++ G  + G A E L++  ++   GL      L +VL AC      G ++K
Sbjct: 212 ERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEK 271

Query: 466 GMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
           GM +       Y    G E        ++D+  + G L +AI + S MP +     + ++
Sbjct: 272 GMAIHC-----YAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAK-NVVTYNAM 325

Query: 522 LRASAIYGDV--KLTENVAERMMDLQL----PSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
           +       D+  + +    +  M++Q     PSP  +S++ +A +     E   ++  ++
Sbjct: 326 ISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALI 385

Query: 576 RKN 578
            KN
Sbjct: 386 CKN 388


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 181/593 (30%), Positives = 312/593 (52%), Gaps = 15/593 (2%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +  + F LG +  +    RC  L ++  +       F      N  + +  L    K
Sbjct: 84  AQGVAANTFALGSSLRSAAAARCPALGAQLQS-----LAFKSGLADNVFAASALLHMYAK 138

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              +  A +VFD +PE + VSWN++I+GY   G    ALE+F  M+ + + P   TF+ L
Sbjct: 139 CGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAAL 198

Query: 154 LSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM-EELD 210
           L+    + +    Q+HG +++ G +L  + + N+ I  Y + G L  +  +F  + +  D
Sbjct: 199 LTAFDDSNYFLMHQLHGKIVKYGSAL-GLTVSNAAITAYSQCGALAESRRIFDQIGDSRD 257

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +ISWN+++      G    A+  F  M R SG   D Y+ + +I+ C +  +  +G+ + 
Sbjct: 258 LISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPE-HDDHQGRAIH 316

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            L +K G    + V +A I ++++ +    +ED+ + F+ L   D    N M++ Y ++ 
Sbjct: 317 GLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHN 376

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL  F+ M   +IR  E+  S  L S   +  ++ G Q H   I SGF SN  V+S
Sbjct: 377 LSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSS 436

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           SL+ MY+K+G +D + + F + DK   V WN+++ G  Q+G A     +F E++E  +P 
Sbjct: 437 SLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPL 496

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T   ++ +C++ G VD+G  + +AM+  YG+    EHYAC +DL  +AGQL KA ++
Sbjct: 497 DHVTFVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKEL 556

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
             +MPF+P   +W ++L A  I+G+++L   VA  ++  +      Y LL+  Y+  G W
Sbjct: 557 IDSMPFEPDAMVWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILLSSMYSGLGMW 616

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
                V++ M+  G++KV G SWI +KN +++FNA +  H    +IY +L LL
Sbjct: 617 SDRAIVQREMKNRGLSKVPGWSWIEVKNEVHSFNAEDRSHPRMDEIYEMLSLL 669



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/488 (27%), Positives = 227/488 (46%), Gaps = 29/488 (5%)

Query: 79  KNCI----SWNICLRGL-LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           K+CI     WN  L    L    L  A +VFDEIP PD  SWNS+++ + S G    A  
Sbjct: 18  KSCIISPTRWNQLLTAYSLSPLGLAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWC 77

Query: 134 MFSKMQLQGVRPSGFTF-SILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +   M  QGV  + F   S L S  ++ C   G Q+     +SGL+  NV   ++L+ MY
Sbjct: 78  LLRAMHAQGVAANTFALGSSLRSAAAARCPALGAQLQSLAFKSGLA-DNVFAASALLHMY 136

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  VF  M E + +SWN+LI+G   SG    AL+ F +M      PDE T +
Sbjct: 137 AKCGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFA 196

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DR 309
            ++ A     N     Q+    VK G      V +A I  +S+C  L +S R+F+Q+ D 
Sbjct: 197 ALLTAFDD-SNYFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDS 255

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQF 368
            D    N M+  Y  +G    A+  F  M+RE  ++   ++ + ++S+ P      G   
Sbjct: 256 RDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQGRAI 315

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGS---IDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
           H + IK+G +    V ++L+ MY +      ++ + + F  L  +D VSWN+++ G +Q+
Sbjct: 316 HGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQH 375

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
             +A+ L  F  +    +  D    +A L +C+    +  G  +  ++    G       
Sbjct: 376 NLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHS-GFASNNFV 434

Query: 486 YACIIDLLCQAGQLGKA------IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            + +I +  ++G L  A       D  S++P       W S++   A +G   +  ++  
Sbjct: 435 SSSLIFMYSKSGILDDAKKSFEEADKGSSVP-------WNSMIFGYAQHGHAHIVHSLFN 487

Query: 540 RMMDLQLP 547
            M++L++P
Sbjct: 488 EMVELKVP 495



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 41/219 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C         + IHG +   GF ++ ++ +  + +YS+ G  DD  + F+E  +
Sbjct: 401 SAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADK 460

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + + W                               NSMI GYA  G++     +F++M
Sbjct: 461 GSSVPW-------------------------------NSMIFGYAQHGHAHIVHSLFNEM 489

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSM-IRSG--LSLSNVVLGNSLIDMYGK 192
               V     TF  L+++ S A     G +I  +M  R G  L + +   G   +D+YG+
Sbjct: 490 VELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACG---VDLYGR 546

Query: 193 LGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
            G L  A  +  +M  E D + W +L+  C   G  ELA
Sbjct: 547 AGQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGNMELA 585


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 175/554 (31%), Positives = 288/554 (51%), Gaps = 36/554 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VFD I EP+++ WN+M  G+A       AL ++  M   G+ P+ +TF  LL
Sbjct: 51  DGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLL 110

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLS------------------------------NVV 181
              + +     G+QIHG +++ G  L                               +VV
Sbjct: 111 KACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVV 170

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
              +LI  Y   G +  A  +F  +   D++SWN+LISG   +G  + AL+ F  M  + 
Sbjct: 171 SYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN 230

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE T+  V++AC +  +++ G+QV +     GF SN  +++A IDL+ KC  +E + 
Sbjct: 231 VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAS 290

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LFE L   D    N +I  Y      + AL LFQ MLR    P E T+  +L +   + 
Sbjct: 291 GLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLG 350

Query: 361 PVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  R L SWN +
Sbjct: 351 AIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAM 410

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GRA    D+F  + ++G+ PD IT   +L AC++ G +D G  +F +M E+Y 
Sbjct: 411 IFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYK 470

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + P  EHY C+IDLL  +G   +A ++ ++M   P   IW S+L+A  ++G+V+L E+ A
Sbjct: 471 ITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFA 530

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           + ++ ++  +   Y LL+  YA  GRW  + + + ++   G+ KV GCS I I + ++ F
Sbjct: 531 QNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 599 NAGELQHHGGQKIY 612
             G+  H   ++IY
Sbjct: 591 IIGDKLHPRNREIY 604



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 186/341 (54%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHGH+ KLG +   Y+    + +Y + G  +D  ++FD+   ++
Sbjct: 109 LLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRD 168

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   ++G   +  + +A K+FDEIP  DVVSWN++ISGYA  G    ALE+F +M  
Sbjct: 169 VVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMK 228

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V+P   T   +LS  + +     G+Q+H  +   G   SN+ + N+LID+Y K G + 
Sbjct: 229 TNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFG-SNLKIVNALIDLYIKCGEVE 287

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG SP+E T+  ++ AC 
Sbjct: 288 TASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACA 347

Query: 258 KLRNLDKGKQVFA-LSVKVGFLSN-SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  +D G+ +   +  ++  +SN S + ++ ID+++KC  +E + ++F+ +     +  
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G    A ++F  M ++ I P + T   +LS+
Sbjct: 408 NAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VFD +    + SWN+MI G+A  G ++ A ++FS+M+  G+ P   TF  
Sbjct: 385 KCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVG 444

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM         +     +ID+ G  G+   A  +  +ME +
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMD 504

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  EL 
Sbjct: 505 PDGVIWCSLLKACKMHGNVELG 526


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/505 (30%), Positives = 282/505 (55%), Gaps = 5/505 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +L  A KVFD IP+ +VVSW SM+SG    G +   L +F++M+ + + PS +T + 
Sbjct: 174 KGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMAS 233

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   + + S   G+ IHGS+++ GL +SN  +  +++DMY K G    A  VF  +  +
Sbjct: 234 VLMACTMLGSLHQGRLIHGSVMKHGL-VSNHFITAAMLDMYVKCGEAEDARQVFDELSFV 292

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ W ++I G   +G    AL  F   ++    P+  TI+ V++A  +LRNL  G+ + 
Sbjct: 293 DLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIH 352

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            +SVK+G + N +V++A +D+++KC  L D+  +F ++   D    N +I+ Y     G 
Sbjct: 353 GISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGS 412

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF  M  +   P   ++   LS+ + +  +  G  FH+ A+K  F SN  V ++L+
Sbjct: 413 DALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALL 472

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            +Y K   + S+  +F +++ R+ V+W  ++ G    G +A ++D+F E+L++ + P+  
Sbjct: 473 NLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEA 532

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              ++L  C++ G V  G   F +M   + + P  +HYAC++D+L +AG L +A++    
Sbjct: 533 VFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQK 592

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP Q   SIW++ L    ++  ++  E    RMM L   +P    +++  Y   GRW+  
Sbjct: 593 MPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYGRWDKS 652

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKN 593
           + ++K+M++ G+ K+ GCS +G++N
Sbjct: 653 LAIRKLMKERGLVKLPGCSSVGLEN 677



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 197/370 (53%), Gaps = 12/370 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L +A +V DE P PD  ++   +  +A+ G    A+ +   M+ +   P+     ++LS
Sbjct: 75  DLASARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRC--PAEQEDVVVLS 132

Query: 156 TVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
               A        +G+++H  ++++G    ++ + N+L+DMY K G L  A  VF  + +
Sbjct: 133 LALKAAVRSADFGYGRRLHCDVVKAGGG--DLFVMNNLVDMYAKGGDLKNARKVFDRIPD 190

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW S++SGC  +G  +  L  F  MR     P EYT++ V+ ACT L +L +G+ +
Sbjct: 191 RNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLI 250

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G +SN  + +A +D++ KC   ED+ ++F++L   D  +   MI  Y + G  
Sbjct: 251 HGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSP 310

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             AL LF       I P   T++ VLS S  +  +  G   H +++K G   N VV ++L
Sbjct: 311 LDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNAL 370

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK  ++  +  IF ++  +D+V+WN+++ G  +N   ++ L +F  +  +G  PD 
Sbjct: 371 VDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDA 430

Query: 448 ITLAAVLLAC 457
           I++   L AC
Sbjct: 431 ISVVNALSAC 440



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 218/469 (46%), Gaps = 48/469 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    S    + IHG + K G  ++ ++    LD+Y + G ++D  Q+FDE+        
Sbjct: 238 CTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFV----- 292

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                     D+V W +MI GY   G    AL +F   +   + 
Sbjct: 293 --------------------------DLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIV 326

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + +LS  +   +   G+ IHG  ++ G ++ N V+ N+L+DMY K   L  A G
Sbjct: 327 PNSVTIATVLSASAQLRNLSLGRSIHGISVKLG-AVENDVVMNALVDMYAKCKALSDAKG 385

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  +   D+++WNSLI+G   +  G  AL  F  MR  G  PD  ++   ++AC  L +
Sbjct: 386 IFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGD 445

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  GK     +VK  F+SN  V +A ++L++KC  L  + R+F +++  +      MI  
Sbjct: 446 LLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGG 505

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDS 379
           YG  G    +++LF  ML+++I+P E   + +LS+      V  G + F SMA       
Sbjct: 506 YGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITP 565

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +    + ++++ A+ G+++ + E   K+  + D   W   + G   + R    L+  EE 
Sbjct: 566 SMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSR----LEFAEEA 621

Query: 439 LEEG--LPPDRITLAAVL--LACNYGGFVDKGMLVFSAMKEEYGV-MPG 482
           +     L PD      ++  L  +YG + DK + +   MKE   V +PG
Sbjct: 622 VNRMMVLHPDTPDFCVMMSNLYTSYGRW-DKSLAIRKLMKERGLVKLPG 669



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 131/277 (47%), Gaps = 17/277 (6%)

Query: 243 SPDEYTI-SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           SPD   +   ++ ACT L +L   + + A  +  G L      +  +  ++    L  + 
Sbjct: 24  SPDANPLLHRLLPACTTLPSL---RALHARLLAHGLLRGLRAHTKLLSCYAALGDLASAR 80

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR------EDIRPTEFTLSCVLS 355
           R+ ++    D     V +  +   G    A+ + + M R      ED+      L   + 
Sbjct: 81  RVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVR 140

Query: 356 SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
           S       +G + H   +K+G   +  V ++L++MYAK G + ++ ++F ++  R++VSW
Sbjct: 141 SADF---GYGRRLHCDVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSW 196

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF-SAMK 474
            +++ G  QNG A E L +F E+ +E + P   T+A+VL+AC   G + +G L+  S MK
Sbjct: 197 TSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMK 256

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
             +G++      A ++D+  + G+   A  +   + F
Sbjct: 257 --HGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSF 291


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 164/546 (30%), Positives = 293/546 (53%), Gaps = 6/546 (1%)

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
           I    L  S +L+ A K+F ++  PD    N+MI GYA       A+ ++  M  +GV  
Sbjct: 50  ISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPV 109

Query: 146 SGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
             +T+  +L+  +   +   G++ H  ++++G   S++ + N+LI  Y   G    A  V
Sbjct: 110 DNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG-SDLFVINALIQFYHNCGSFGCACDV 168

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRN 261
           F      D+++WN +I+   N G  E A D    M +     PDE T+  ++ AC +L N
Sbjct: 169 FDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGN 228

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L++GK + + S ++G   N  V +A +D++ KC+ +E +  +F ++   D      M+S 
Sbjct: 229 LERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSG 288

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
             + G+ + AL LFQ M    I   E TL  VLS+      ++ G   H +  K   + +
Sbjct: 289 LAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCD 348

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            V+ ++L++MYAK GSID + ++F ++  R++ +WN ++ GL  +G   + + +F+++  
Sbjct: 349 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEH 408

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           + L PD +T  A+L AC++ G VD+G+ +F AMK ++ + P  EHY C++DLLC+A ++ 
Sbjct: 409 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 468

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
            A+     MP +    +W ++L A    G   L E +  R+++L+  S   Y +L+  YA
Sbjct: 469 DALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYA 528

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
              +W+  ++++K M+  GI K  GCSWI +   I+ F AG+  H   ++IY ++  +T 
Sbjct: 529 GVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 588

Query: 621 EMEDEG 626
            +  +G
Sbjct: 589 RVNLDG 594



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 187/431 (43%), Gaps = 45/431 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +    +  H  + K GF +  ++ N  +  Y   G+      +FDE   ++ ++W
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGV 143
           NI                               MI+ + + G S+ A ++  +M +L  +
Sbjct: 181 NI-------------------------------MINAHLNKGLSEKAFDLLDEMTKLDNL 209

Query: 144 RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           RP   T   L+   +   +   GK +H      GL   N+ + N+++DMY K   +  A 
Sbjct: 210 RPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLD-ENLRVNNAILDMYCKCDDIESAQ 268

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF  + E D++SW S++SG   SGY + AL  F  M+ +    DE T+  V++AC +  
Sbjct: 269 EVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTG 328

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            LD+GK +  L  K     + ++ +A +D+++KC  ++ ++++F ++   +    N +I 
Sbjct: 329 ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIG 388

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFT---LSCVLSSIPIPPVEHG-SQFHSMAIKSG 376
               +G GE A+ LF  M  + + P + T   L C  S   +  V+ G + F +M  K  
Sbjct: 389 GLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGL--VDEGLAMFQAMKNKFQ 446

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVF 435
            +        ++++  +   +D +      +  K + V W T++      G       + 
Sbjct: 447 IEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIG 506

Query: 436 EELLEEGLPPD 446
             ++E  L PD
Sbjct: 507 RRVIE--LEPD 515



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 133/291 (45%), Gaps = 36/291 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    + +  K +H +  +LG + +  + N  LD+Y                    
Sbjct: 219 LVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC------------------- 259

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K D++++A +VF+ I E DV+SW SM+SG A  GY   AL +F KMQL
Sbjct: 260 ------------KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQL 307

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             +     T   +LS  +       GK IH  + +  ++  ++VL  +L+DMY K G + 
Sbjct: 308 NKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEIN-CDLVLETALVDMYAKCGSID 366

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M   ++ +WN+LI G    G+GE A+  F  M +    PD+ T   ++ AC+
Sbjct: 367 LALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACS 426

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
               +D+G  +F A+  K             +DL  +  +++D++   E +
Sbjct: 427 HAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM 477


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 186/621 (29%), Positives = 328/621 (52%), Gaps = 56/621 (9%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ ++  C   + F F   +H  + K G +   ++GN  + +YSR               
Sbjct: 179 CTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSR--------------- 223

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY-ALEMFS 136
                    C R       L  A +VFDE+   D+VSWN+M+SGYA  G S   A+ +F 
Sbjct: 224 ---------CCR-------LVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFL 267

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGK------QIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +M  +G++    +F+     +S+  HGK      QIH   ++ G   ++V + N LI  Y
Sbjct: 268 EMLKEGMKLDHVSFT---GAISACGHGKEFELGRQIHSLAVKIGYD-THVKVCNVLISTY 323

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K   +  A  VF ++ + +++SW ++IS        E A   F  MR  G  P++ T  
Sbjct: 324 SKCEDIEDAKLVFESIIDRNVVSWTTMISIS-----EEDATSLFNEMRRDGVYPNDVTFV 378

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +I+A T    +++G+ +  + VK  FLS   V ++ I +++K   + DS+++FE+L+  
Sbjct: 379 GLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYR 438

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP---VEHGSQ 367
           +    N +IS Y + G  + AL+ F   L E  RP EFT   VLSSI       + HG +
Sbjct: 439 EIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASAEAISMRHGQR 497

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS  +K G ++N +V+S+L++MYAK GSI  S  +F +   ++ V+W  I+    ++G 
Sbjct: 498 CHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGD 557

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
               +++F+++  EG+ PD IT  AV+ AC   G VD G  +F++M +++ + P  EHY+
Sbjct: 558 YEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYS 617

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
            ++D+L +AG+L +A +    +P   G S+ +S+L A  I+G+V + + VA+ +++++  
Sbjct: 618 SMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPM 677

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR-----IYTFNAGE 602
               Y L++  YA +G WE + +++K MR+ G+ K  G SW+ + +      ++ F++ +
Sbjct: 678 GSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDVGDADGSLYLHGFSSDD 737

Query: 603 LQHHGGQKIYLVLRLLTWEME 623
             H   ++IY +   L  EM+
Sbjct: 738 KFHPQSEEIYRMAETLGLEMK 758



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 244/510 (47%), Gaps = 46/510 (9%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH      GF +H  + N  +++Y + G  D  L +F+ +   + +SWN  L G  +SD+
Sbjct: 100 IHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSDD 159

Query: 97  -LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
            L+ AL++       D V+  +++   A C  SD+                GF F     
Sbjct: 160 ALNFALRMNFTGVAFDAVTCTTVL---AFC--SDH---------------EGFIF----- 194

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G Q+H  +++ GL    V +GN+LI MY +   L  A  VF  M   D++SWN
Sbjct: 195 -------GFQLHSRILKCGLD-CEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWN 246

Query: 216 SLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           +++SG    G   L A+  F  M   G   D  + +  I+AC   +  + G+Q+ +L+VK
Sbjct: 247 AMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVK 306

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G+ ++  V +  I  +SKC  +ED+  +FE +   +      MIS        E A  L
Sbjct: 307 IGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISIS-----EEDATSL 361

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  M R+ + P + T   ++ +I +   VE G   H + +K+ F S   V++SL+ MYAK
Sbjct: 362 FNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAK 421

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
             S+  S ++F +L+ R+++SWN+++ G  QNG   E L  F   L E   P+  T  +V
Sbjct: 422 FESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFTFGSV 480

Query: 454 L--LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           L  +A      +  G    S +  + G+       + ++D+  + G + +++ + S  P 
Sbjct: 481 LSSIASAEAISMRHGQRCHSHIL-KLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPL 539

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERM 541
           +   + W +I+ A A +GD +   N+ + M
Sbjct: 540 KNEVA-WTAIISAHARHGDYEAVMNLFKDM 568



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 192/376 (51%), Gaps = 24/376 (6%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SA 160
            D+ P+  + S N  +        S  AL++F K QLQ     GF  +I   TV+    A
Sbjct: 35  LDQSPQTTIASLNRSMLTALRRNLSLEALDLFKK-QLQW----GFVGNIDQVTVAIVLKA 89

Query: 161 CHGK-----QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           C G      QIH   I SG  +S+V + NSL++MY K G+   A  VF N+   DI+SWN
Sbjct: 90  CCGDSKLGCQIHAFAISSGF-ISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWN 148

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +++SG   S   + AL+    M ++G + D  T + V+  C+       G Q+ +  +K 
Sbjct: 149 TVLSGFQRS---DDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKC 205

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG-FGEVALEL 334
           G      V +A I ++S+C RL ++ R+F+++   D    N M+S Y + G  G  A+ +
Sbjct: 206 GLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILV 265

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F  ML+E ++    + +  +S+       E G Q HS+A+K G+D++  V + L+  Y+K
Sbjct: 266 FLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSK 325

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
              I+ +  +F  +  R++VSW T M+ +++     +   +F E+  +G+ P+ +T   +
Sbjct: 326 CEDIEDAKLVFESIIDRNVVSWTT-MISISEE----DATSLFNEMRRDGVYPNDVTFVGL 380

Query: 454 LLACNYGGFVDKGMLV 469
           + A      V++G ++
Sbjct: 381 IHAITMKNLVEEGQMI 396



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 125/251 (49%), Gaps = 19/251 (7%)

Query: 230 ALDQFYSMRYSGY--SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
           ALD F      G+  + D+ T++IV+ AC     L  G Q+ A ++  GF+S+  V ++ 
Sbjct: 62  ALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKL--GCQIHAFAISSGFISHVTVPNSL 119

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           ++++ K    + ++ +FE L+  D    N ++S + R      + +     LR +     
Sbjct: 120 MNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQR------SDDALNFALRMNFTGVA 173

Query: 348 F-TLSCVLSSIPIPPVEH-----GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           F  ++C  +++     +H     G Q HS  +K G D    V ++L+ MY++   +  + 
Sbjct: 174 FDAVTC--TTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEAR 231

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAA-ETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            +F ++  +DLVSWN ++ G  Q G +  E + VF E+L+EG+  D ++    + AC +G
Sbjct: 232 RVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHG 291

Query: 461 GFVDKGMLVFS 471
              + G  + S
Sbjct: 292 KEFELGRQIHS 302


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 329/636 (51%), Gaps = 63/636 (9%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS+C + ++       F     +H  + K GF+   ++GN  + +YSR+G          
Sbjct: 169 LSFCWRHVE-----AYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWG---------- 213

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG-YSDYALE 133
                                +L  A +VF+E+   D+VSWN+MISGY+  G Y   A+ 
Sbjct: 214 ---------------------HLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAIS 252

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSL 186
           MF +M   G+     +F+    +  SAC         +QIHG  I++     +V + N L
Sbjct: 253 MFLQMFRGGMELDRISFT----SAVSACGYEKNLELARQIHGLSIKTRHE-KHVAVSNVL 307

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I  Y K  V+  A  VF NM E +++SW ++IS        E A+  F  MR  G  P++
Sbjct: 308 ISTYFKCQVIEDARLVFQNMNERNVVSWTTMIS----IDEAE-AVSFFNEMRLDGVYPND 362

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T   +I+A T    + +GK V     K GF S S V ++ I +++K   ++DSV++F++
Sbjct: 363 VTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNVCNSIITMYAKFKSMQDSVKVFQE 422

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP---PVE 363
           L   D    N +IS +   G  + A+  F   L E  +P +++   +L++I       ++
Sbjct: 423 LKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIES-KPNQYSFGSILNAIGAAEDVSLK 481

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
           +G + HS  IK G +++ +V+S+L++MYAK GSI  S ++FV+  ++   +W TI+    
Sbjct: 482 YGQRCHSQIIKLGLNTDPIVSSALLDMYAKRGSICESQKVFVETPQQSQFAWTTIISAYA 541

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           ++G     ++ FEE+    + PD IT  ++L AC   G VD G  +F +M ++Y + P  
Sbjct: 542 RHGDYESVMNWFEEMRRLEVRPDSITFLSILTACGRRGMVDMGCHLFGSMVKDYQIEPSA 601

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY+C++D+L +AG+L +A  + S +P  PG S+ +S+L A  ++G+V + E VA+ +M+
Sbjct: 602 EHYSCLVDMLGRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALME 661

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN-----RIYTF 598
           ++      Y L++  YA  G+WE + +V+K MR  G+ K  G SW+ +        ++ F
Sbjct: 662 MEPTESGSYVLMSNLYAEIGKWEMVAKVRKRMRVKGVKKEVGFSWVDVGGIDSSLSLHGF 721

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDK 634
           ++G+  H   + I  +   L +EM+      +EC K
Sbjct: 722 SSGDTSHPQSEAICRMAECLGFEMKFLREEEIECQK 757



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 225/481 (46%), Gaps = 22/481 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           KS     AL +F+ +  PD+VSWN+++SG   C  S+ A     KM   GV     T++ 
Sbjct: 111 KSGQFCKALCIFENLTHPDIVSWNTVLSG---CQTSEDAFSFACKMNSSGVVFDAVTYTT 167

Query: 153 LLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           +LS            G Q+H  +++ G     V +GN+LI MY + G L  A  VF  M+
Sbjct: 168 VLSFCWRHVEAYFLIGLQLHSCIVKFGFDC-EVFVGNALISMYSRWGHLVEARRVFEEMK 226

Query: 208 ELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
             D++SWN++ISG    G YG  A+  F  M   G   D  + +  ++AC   +NL+  +
Sbjct: 227 TRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELAR 286

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+  LS+K     +  V +  I  + KC  +ED+  +F+ ++  +      MIS      
Sbjct: 287 QIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMISIDEAE- 345

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVAS 385
               A+  F  M  + + P + T   ++ +I I   V  G   H    K+GF S + V +
Sbjct: 346 ----AVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNVCN 401

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           S++ MYAK  S+  S ++F +L  +D+++WN ++ G   NG   E +  F   L E   P
Sbjct: 402 SIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIES-KP 460

Query: 446 DRITLAAVLLACNYGGFVD--KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
           ++ +  ++L A      V    G    S +  + G+       + ++D+  + G + ++ 
Sbjct: 461 NQYSFGSILNAIGAAEDVSLKYGQRCHSQII-KLGLNTDPIVSSALLDMYAKRGSICESQ 519

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMR 562
            +    P Q   + W +I+ A A +GD +   N  E M  L++ P  + +  +  A   R
Sbjct: 520 KVFVETPQQSQFA-WTTIISAYARHGDYESVMNWFEEMRRLEVRPDSITFLSILTACGRR 578

Query: 563 G 563
           G
Sbjct: 579 G 579



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 174/339 (51%), Gaps = 27/339 (7%)

Query: 146 SGFTFSILLSTVSSA---CHG-----KQIHG-SMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           SGF  +I   TV++A   C G      QIHG S+I   ++++  ++ NSL++MY K G  
Sbjct: 58  SGFINNIDEFTVANALKACRGYPLLGSQIHGFSIIHEFVNVT--IVSNSLMNMYCKSGQF 115

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F N+   DI+SWN+++SGC  S   E A      M  SG   D  T + V++ C
Sbjct: 116 CKALCIFENLTHPDIVSWNTVLSGCQTS---EDAFSFACKMNSSGVVFDAVTYTTVLSFC 172

Query: 257 TKLRNLDK----GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
              R+++     G Q+ +  VK GF     V +A I ++S+   L ++ R+FE++   D 
Sbjct: 173 --WRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMKTRDL 230

Query: 313 AVINVMISTYGRYG-FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
              N MIS Y + G +G  A+ +F  M R  +     + +  +S+      +E   Q H 
Sbjct: 231 VSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELARQIHG 290

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           ++IK+  + +  V++ L+  Y K   I+ +  +F  +++R++VSW T M+ + +    AE
Sbjct: 291 LSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTT-MISIDE----AE 345

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
            +  F E+  +G+ P+ +T   ++ A   G  V +G +V
Sbjct: 346 AVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMV 384


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 168/536 (31%), Positives = 285/536 (53%), Gaps = 12/536 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A K+FDE   PDV  WN++I  Y+        +EM+  M+  GV P GFTF  +L   + 
Sbjct: 107 ARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE 166

Query: 160 ------ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
                 +C    IHG +I+ G   S+V + N L+ +Y K G +  A  VF  +    I+S
Sbjct: 167 LLDFGLSC---IIHGQIIKYGFG-SDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVS 222

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W S+ISG   +G    AL  F  MR +G  PD   +  ++ A T + +L++G+ +    +
Sbjct: 223 WTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVI 282

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+G      +L +    ++KC  +  +   F+Q+   +  + N MIS Y + G  E A+ 
Sbjct: 283 KMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVN 342

Query: 334 LFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF  M+  +I+P   T+ S VL+S  +  +E          KS + S+  V +SL++MYA
Sbjct: 343 LFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYA 402

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K GS++ +  +F +   +D+V W+ ++MG   +G+  E ++++  + + G+ P+ +T   
Sbjct: 403 KCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIG 462

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L ACN+ G V +G  +F  MK+ + ++P  EHY+C++DLL +AG LG+A      +P +
Sbjct: 463 LLTACNHSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIE 521

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           PG S+W ++L A  IY  V L E  A ++  L   +   Y  L+  YA    W+ +  V+
Sbjct: 522 PGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVR 581

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +MR+ G+NK  G S I I  ++  F+ G+  H   ++I+  L+ L   +++ G V
Sbjct: 582 VLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFV 637



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 165/345 (47%), Gaps = 42/345 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C++L+D       F  +  IHG + K GF +  ++ N  + LY++ G          
Sbjct: 161 LKACTELLD-------FGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCG---------- 203

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                ++  A  VFD +    +VSW S+ISGYA  G +  AL M
Sbjct: 204 ---------------------HIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRM 242

Query: 135 FSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           FS+M+  GV+P       +L   + V     G+ IHG +I+ GL     +L  SL   Y 
Sbjct: 243 FSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALL-ISLTAFYA 301

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G++  A   F  M+  ++I WN++ISG   +G+ E A++ F+ M      PD  T+  
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS 361

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            + A  ++ +L+  + +     K  + S+  V ++ ID+++KC  +E + R+F++    D
Sbjct: 362 AVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKD 421

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
             + + MI  YG +G G  A+ L+ +M +  + P + T   +L++
Sbjct: 422 VVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTA 466



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 143/308 (46%), Gaps = 2/308 (0%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++ L+   +   H  QIH  ++ SGL   N  L   L++    LG + YA  +F      
Sbjct: 59  YASLIDNSTHKRHLDQIHNRLVISGLQ-HNGFLMTKLVNGSSNLGQICYARKLFDEFCYP 117

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+  WN++I     +      ++ +  MR++G  PD +T   V+ ACT+L +      + 
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K GF S+  V +  + L++KC  +  +  +F+ L          +IS Y + G   
Sbjct: 178 GQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAV 237

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL +F  M    ++P    L  +L +   +  +E G   H   IK G +    +  SL 
Sbjct: 238 EALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLT 297

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
             YAK G +  +   F ++   +++ WN ++ G  +NG A E +++F  ++   + PD +
Sbjct: 298 AFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSV 357

Query: 449 TLAAVLLA 456
           T+ + +LA
Sbjct: 358 TVRSAVLA 365



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 45/95 (47%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            H  Q H+  + SG   N  + + L+   +  G I  + ++F +    D+  WN I+   
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSY 129

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++N    +T++++  +   G+ PD  T   VL AC
Sbjct: 130 SRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKAC 164


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 172/599 (28%), Positives = 309/599 (51%), Gaps = 38/599 (6%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           F K +H    K+GF    Y+    L +Y                                
Sbjct: 259 FGKQVHCDAIKVGFEDDPYVHTSLLTMYG------------------------------- 287

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +++A KVF+E+P+ ++  WN++IS Y   GY+  AL ++ +M+L  V    FT   
Sbjct: 288 KCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILN 347

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L++ S A     G+ IH  +++  L  S++ + ++L+ MY K G   YA  +F  M+E 
Sbjct: 348 VLTSSSMAGLYDLGRLIHTEIVKRPLQ-SSITIQSALLTMYSKFGDSNYANSIFSTMKER 406

Query: 210 DIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           D+++W S+ISG C N  Y E ALD F +M      PD   ++ +I+ACT L  +D G  +
Sbjct: 407 DVVAWGSVISGFCQNRKYKE-ALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTI 465

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G   +  V S+ +D++SK    E +  +F  +   +    N +IS Y R    
Sbjct: 466 HGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLP 525

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           ++++ LF  +LR D+ P   + + VL++I  +  +  G   H   ++     +  V ++L
Sbjct: 526 DLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTL 585

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MY K G +  +  IF ++ +++LV+WN+++ G   +G  ++ +++F+E+   G+ PD 
Sbjct: 586 IDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDD 645

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T  ++L +CN+ G +++G+ +F  MK ++G+ P  EHY  I+DL  +AG LG A     
Sbjct: 646 VTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVK 705

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +P  SIW S+L +  I+ +++L E VA ++++++      Y  L   Y     W+ 
Sbjct: 706 NMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDR 765

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
              ++  M++ G+ K  GCSWI ++N++  F +G+       +IY  L  L   M  +G
Sbjct: 766 TANLRASMKEKGLKKTPGCSWIEVRNKVDVFYSGDCSSPITTEIYDTLSSLKRNMIKKG 824



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 244/523 (46%), Gaps = 59/523 (11%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           K+ V     +Y S L+  C S  +  + KTIH  +   G ++  Y+ +  +++Y + GT 
Sbjct: 46  KSPVYTTRFTYPS-LLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTF 104

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
            D +++FD++P+                            +   DV  WNS+I GY   G
Sbjct: 105 TDAVKVFDQLPKSG--------------------------VSVDDVTIWNSIIDGYFRFG 138

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
             +  +  F +MQ  G +                  GKQIH  ++R+ L+  +  L  +L
Sbjct: 139 QLEEGMVQFGRMQSSGYK-----------------EGKQIHSYIVRNMLNF-DPFLETAL 180

Query: 187 IDMYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           ID Y K G    A  +F  +++  +I++WN +I G   +G  E +L+ +   +       
Sbjct: 181 IDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVV 240

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
             + +  ++AC +   +  GKQV   ++KVGF  +  V ++ + ++ KC  +E + ++F 
Sbjct: 241 SSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFN 300

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EH 364
           ++   +  + N +IS Y   G+   AL +++ M    +    FT+  VL+S  +  + + 
Sbjct: 301 EVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDL 360

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H+  +K    S+  + S+L+ MY+K G  + +  IF  + +RD+V+W +++ G  Q
Sbjct: 361 GRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQ 420

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD-----KGMLVFSAMKEEYGV 479
           N +  E LD F  +  + + PD   +A+++ AC     VD      G ++ S ++ +  V
Sbjct: 421 NRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFV 480

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
                  + ++D+  + G   +A +I S MP +     W SI+
Sbjct: 481 A------SSLLDMYSKFGFPERAGNIFSDMPLK-NLVAWNSII 516



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 177/353 (50%), Gaps = 34/353 (9%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL++++K  +   R   FT+  LL   +++S+  +GK IH S+I +GL  S+  + +SLI
Sbjct: 40  ALKLYTKSPVYTTR---FTYPSLLKACASLSNLQYGKTIHSSIITTGLH-SDQYITSSLI 95

Query: 188 DMYGKLGVLYYAFGVFLNMEEL-----DIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           ++Y K G    A  VF  + +      D+  WNS+I G F  G  E  + QF  M+ SGY
Sbjct: 96  NIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGY 155

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
                                +GKQ+ +  V+     +  + +A ID + KC R  ++  
Sbjct: 156 K--------------------EGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARY 195

Query: 303 LFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           LF++L DR +    NVMI  +G  G  E +LE + L   E+++    + +C LS+     
Sbjct: 196 LFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGE 255

Query: 362 -VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            V  G Q H  AIK GF+ +  V +SL+ MY K   I+S+ ++F ++  +++  WN ++ 
Sbjct: 256 FVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALIS 315

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
               NG A + L +++++    +  D  T+  VL + +  G  D G L+ + +
Sbjct: 316 AYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEI 368



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 138/293 (47%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C   +  D   TIHG + K G     ++ +  LD+YS+FG  +    +F ++P 
Sbjct: 447 ASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPL 506

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN ++W                               NS+IS Y      D ++ +FS++
Sbjct: 507 KNLVAW-------------------------------NSIISCYCRNNLPDLSINLFSQV 535

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               + P   +F+ +L+ +SS      GK +HG ++R  +   ++ + N+LIDMY K G+
Sbjct: 536 LRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPF-DLQVENTLIDMYIKCGL 594

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L YA  +F  + E ++++WNS+I G  + G    A++ F  MR SG  PD+ T   ++++
Sbjct: 595 LKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSS 654

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C     +++G  +F  + +K G           +DL+ +   L D+    + +
Sbjct: 655 CNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNM 707


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 174/631 (27%), Positives = 319/631 (50%), Gaps = 49/631 (7%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
            LF+   + +T   N  +  Y + G   +  +LFD + ++  ++W I + G  + +    
Sbjct: 68  QLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE 127

Query: 100 ALKVFDEI----PEPDVVSW-----------------------------------NSMIS 120
           A ++F ++     EPD V++                                   N+++ 
Sbjct: 128 AFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVD 187

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSL 177
            Y      D A ++F +M         FTF+ +L     +     G+QIH  +I++   +
Sbjct: 188 SYCKSNRLDLACQLFKEMP----EIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNF-V 242

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            NV + N+L+D Y K   +  A  +F  M E D +S+N +ISG    G  + A D F  +
Sbjct: 243 WNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFREL 302

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           +++ +   ++  + +++  +   + + G+Q+ A ++     S  +V ++ +D+++KC + 
Sbjct: 303 QFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKF 362

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SS 356
           E++  +F  L          MIS Y + GF E  L+LF  M +  +   + T + +L +S
Sbjct: 363 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 422

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             I  +  G Q HS  IKSGF SN    S+L+++YAK GSI  + + F ++  R++VSWN
Sbjct: 423 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWN 482

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++    QNG A  TL  F+E++  GL PD ++   VL AC++ G V++G+  F++M + 
Sbjct: 483 AMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI 542

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           Y + P  EHYA ++D+LC++G+  +A  + + MP  P   +W S+L A  I+ + +L   
Sbjct: 543 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 602

Query: 537 VAERMMDL-QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
            A+++ ++ +L    PY  ++  YA  G+WE + +V K MR  G+ K+   SW+ IK+  
Sbjct: 603 AADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHET 662

Query: 596 YTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + F+A +  H   ++I   + +LT  ME+ G
Sbjct: 663 HMFSANDRCHPQIEEIRKKIDMLTKTMEELG 693



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 232/508 (45%), Gaps = 42/508 (8%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            +    I   + K GF+  T   N  +  + + G      QLF+++P KN +S N+ + G
Sbjct: 28  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 87

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
            +KS NL  A K+FD + E   V+W  +I GY+       A E+F +MQ  G  P   TF
Sbjct: 88  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 147

Query: 151 SILLSTVSSACHGKQI---HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             LLS  +    G QI      +I+ G   S +++GN+L+D Y K   L  A  +F  M 
Sbjct: 148 VTLLSGCNGHEMGNQITQVQTQIIKLGYD-SRLIVGNTLVDSYCKSNRLDLACQLFKEMP 206

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E+D  ++ +++  C N G  ++ L                                 G+Q
Sbjct: 207 EIDSFTFAAVL--CANIGLDDIVL---------------------------------GQQ 231

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           + +  +K  F+ N  V +A +D +SK + + D+ +LF+++   D    NV+IS Y   G 
Sbjct: 232 IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 291

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            + A +LF+ +        +F  + +LS +      E G Q H+  I +  DS  +V +S
Sbjct: 292 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 351

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MYAK G  + +  IF  L  R  V W  ++    Q G   E L +F ++ +  +  D
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIAD 411

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
           + T A++L A      +  G  + S + +  G M      + ++D+  + G +  A+   
Sbjct: 412 QATFASLLRASASIASLSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTF 470

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLT 534
             MP +   S W +++ A A  G+ + T
Sbjct: 471 QEMPDRNIVS-WNAMISAYAQNGEAEAT 497



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 200/416 (48%), Gaps = 44/416 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IH  + K  F  + ++ N  LD YS+  +  D  +LFDE+P+++ +S+N+        
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNV-------- 281

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                  +ISGYA  G   YA ++F ++Q        F F+ +L
Sbjct: 282 -----------------------IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 318

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  S+      G+QIH   I +    S +++GNSL+DMY K G    A  +F N+     
Sbjct: 319 SIASNTLDWEMGRQIHAQTIVTTAD-SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 377

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + W ++IS     G+ E  L  F  MR +    D+ T + ++ A   + +L  GKQ+ + 
Sbjct: 378 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSF 437

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K GF+SN    SA +D+++KC  ++D+V+ F+++   +    N MIS Y + G  E  
Sbjct: 438 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEAT 497

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS-QFHSMAIKSGFDSNAVVASSLME 389
           L+ F+ M+   ++P   +   VLS+      VE G   F+SM      D      +S+++
Sbjct: 498 LKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVD 557

Query: 390 MYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG--LTQNG----RAAETLDVFEEL 438
           M  ++G  + + ++  ++    D + W++++    + +N     RAA+ L   EEL
Sbjct: 558 MLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEEL 613



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 130/281 (46%), Gaps = 36/281 (12%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           ++  + IH        ++   +GN  +D+Y++ G  ++   +F  +  ++ + W      
Sbjct: 327 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPW------ 380

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                     +MIS Y   G+ +  L++F+KM+   V     TF
Sbjct: 381 -------------------------TAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 415

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LL   ++++S   GKQ+H  +I+SG  +SNV  G++L+D+Y K G +  A   F  M 
Sbjct: 416 ASLLRASASIASLSLGKQLHSFIIKSGF-MSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + +I+SWN++IS    +G  E  L  F  M  SG  PD  +   V++AC+    +++G  
Sbjct: 475 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW 534

Query: 268 VFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            F    ++  L       ++ +D+  +  R  ++ +L  ++
Sbjct: 535 HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEM 575



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 116/275 (42%), Gaps = 55/275 (20%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++A V     ++ S L+    S  S    K +H  + K GF ++ + G+  LD+Y++ G
Sbjct: 403 MRQASVIADQATFAS-LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCG 461

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +  D +Q F E+P +N +SWN                               +MIS YA 
Sbjct: 462 SIKDAVQTFQEMPDRNIVSWN-------------------------------AMISAYAQ 490

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGL----SLSNV 180
            G ++  L+ F +M L G++P   +F  +LS  S        H  ++  GL    S++ +
Sbjct: 491 NGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS--------HSGLVEEGLWHFNSMTQI 542

Query: 181 VLGN-------SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGEL 229
              +       S++DM  + G    A  +   M  + D I W+S+++ C    N      
Sbjct: 543 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 602

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           A DQ ++M     +     +S +  A  +  N+ K
Sbjct: 603 AADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSK 637


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 181/606 (29%), Positives = 311/606 (51%), Gaps = 39/606 (6%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           K     K +H  L   G+   T+L N  +++YS+ G                        
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCG------------------------ 54

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                   LD ALK+FD +P+ ++VSW +MISG +       A+  F  M++ G  P+ F
Sbjct: 55  -------ELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQF 107

Query: 149 TFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            FS  +   +++ S   GKQ+H   ++ G+  S + +G++L DMY K G ++ A  VF  
Sbjct: 108 AFSSAIRACASLGSIEMGKQMHCLALKFGIG-SELFVGSNLEDMYSKCGAMFDACKVFEE 166

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +SW ++I G    G  E AL  F  M     + D++ +   + AC  L+    G
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 226

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYG 323
           + V +  VK+GF S+  V +A  D++SK   +E +  +F  +D     V++   +I  Y 
Sbjct: 227 RSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYV 285

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
                E  L +F  + R+ I P EFT S ++ +      +E G+Q H+  +K  FD +  
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 345

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V+S L++MY K G ++ + + F ++     ++WN+++    Q+G   + + +FE +++ G
Sbjct: 346 VSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRG 405

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + P+ IT  ++L  C++ G V++G+  F +M + YGV+PGEEHY+C+IDLL +AG+L +A
Sbjct: 406 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEA 465

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            +  + MPF+P    W S L A  I+GD ++ +  AE+++ L+  +     LL+  YA  
Sbjct: 466 KEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANE 525

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
            +WE +  V+  MR   + K+ G SW+ +  + + F A +  H     IY  L  L  ++
Sbjct: 526 RQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQI 585

Query: 623 EDEGCV 628
           +  G V
Sbjct: 586 KAAGYV 591



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 188/394 (47%), Gaps = 36/394 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  I  C S  S +  K +H    K G  +  ++G+   D+YS+ G   D  ++F+E+P 
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 169

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSK 137
           K+ +SW   + G  K    + AL  F ++ + +V +  + + S   +CG    AL+    
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG----ALK---- 221

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                 AC  G+ +H S+++ G   S++ +GN+L DMY K G +
Sbjct: 222 ----------------------ACKFGRSVHSSVVKLGFE-SDIFVGNALTDMYSKAGDM 258

Query: 197 YYAFGVF-LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  VF ++ E  +++S+  LI G   +   E  L  F  +R  G  P+E+T S +I A
Sbjct: 259 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 318

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C     L++G Q+ A  +K+ F  +  V S  +D++ KC  LE +++ F+++        
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAW 378

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
           N ++S +G++G G+ A+++F+ M+   ++P   T   +L+       VE G   F+SM  
Sbjct: 379 NSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 438

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
             G        S ++++  + G +  + E   ++
Sbjct: 439 TYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 163/363 (44%), Gaps = 36/363 (9%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   ++ VI    K + L +GKQ+ AL +  G+   + + +  ++++SKC  L+ +++LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
           + + + +      MIS   +      A+  F  M      PT+F  S  + +   +  +E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H +A+K G  S   V S+L +MY+K G++  + ++F ++  +D VSW  ++ G +
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAV------LLACNYGGFV---------DKGML 468
           + G   E L  F+++++E +  D+  L +       L AC +G  V         +  + 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 469 VFSAMKEEY---GVMPGEEH-------------YACIIDLLCQAGQLGKAIDITSTMPFQ 512
           V +A+ + Y   G M    +             Y C+ID   +  Q+ K + +   +  Q
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 513 ---PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAI 568
              P    + S+++A A    ++    +  ++M +     P   S+L   Y   G  E  
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQA 363

Query: 569 VRV 571
           ++ 
Sbjct: 364 IQA 366


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 296/555 (53%), Gaps = 38/555 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ +F+ I EP+++ WN+M  G+A    S  AL+++  M   G+ P+ ++F  LL
Sbjct: 13  DGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLL 72

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL--------------- 196
            + + +     G+QIHG +++ G  L ++ +  SLI MY + G L               
Sbjct: 73  KSCAKSKALIEGQQIHGHVLKLGYDL-DMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 197 ---------YYAFGVFLNMEEL-------DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                    Y + G   N  +L       D++SWN++ISG   +   + AL+ +  M  +
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T+  V++AC +  +++ G+Q+ +     GF SN  +++  IDL+SKC  +E +
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             LF+ L + D    N +I  +      + AL LFQ MLR    P + T+  VL +   +
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHL 311

Query: 360 PPVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  R L SWN 
Sbjct: 312 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +G+A    D+F ++ + G+ PD IT   +L AC++ G +D G  +F +M ++Y
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDY 431

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL   G   +A ++  TMP +P   IW S+L+A  ++ +V+L E+ 
Sbjct: 432 KITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESY 491

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+ ++ ++  +P  Y LL+  YA  GRW+ + +++ ++   GI K  GCS I I + ++ 
Sbjct: 492 AQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHE 551

Query: 598 FNAGELQHHGGQKIY 612
           F  G+  H   ++IY
Sbjct: 552 FIIGDKFHPRNREIY 566



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 182/346 (52%), Gaps = 16/346 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+    + IHGH+ KLG++   Y+    + +Y++ G  +D  ++FD    ++
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA-SCGYSDYALEMFSKMQ 139
            +S+   + G      ++ A K+FDEI   DVVSWN+MISGY  +C + + ALE++  M 
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE-ALELYKDMM 189

Query: 140 LQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
              V+P   T    + TV SAC        G+Q+H  +   G   SN+ + N LID+Y K
Sbjct: 190 KTNVKPDEST----MVTVVSACAQSGSIELGRQLHSWIEDHGFG-SNIKIVNVLIDLYSK 244

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A G+F  + + D+ISWN+LI G  +    + AL  F  M  SG SP++ T+  V
Sbjct: 245 CGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304

Query: 253 INACTKLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           + AC  L  +D G+   V+      G  + S +L++ ID+++KC  +E + ++F+ +   
Sbjct: 305 LPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTR 364

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
             +  N MI  +  +G    A +LF  M +  I P + T   +LS+
Sbjct: 365 SLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSA 410



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VFD +    + SWN+MI G+A  G ++ A ++FSKM+  G+ P   TF  
Sbjct: 347 KCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVG 406

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM +       +     +ID+ G  G+   A  +   M  E
Sbjct: 407 LLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPME 466

Query: 209 LDIISWNSLISGC 221
            D + W SL+  C
Sbjct: 467 PDGVIWCSLLKAC 479


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 259/450 (57%), Gaps = 3/450 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +H  +++S +   ++V+GN+L++MY K G L  A  VF  M + D ++W +LISG  
Sbjct: 79  GRIVHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYS 137

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
                  AL  F  M   GYSP+E+T+S VI A    R    G Q+    VK GF SN  
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V SA +DL+++   ++D+  +F+ L+  +    N +I+ + R    E ALELFQ MLR+ 
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            RP+ F+ + +  +      +E G   H+  IKSG    A   ++L++MYAK+GSI  + 
Sbjct: 258 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 317

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           +IF +L KRD+VSWN+++    Q+G   E +  FEE+   G+ P+ I+  +VL AC++ G
Sbjct: 318 KIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   +  MK++ G++P   HY  ++DLL +AG L +A+     MP +P  +IW+++
Sbjct: 378 LLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKAL 436

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ + +L    AE + +L    P P+ +L   YA  GRW    RV+K M+++G+ 
Sbjct: 437 LNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVK 496

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           K   CSW+ I+N I+ F A + +H   ++I
Sbjct: 497 KEPACSWVEIENAIHMFVANDERHPQREEI 526



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 195/392 (49%), Gaps = 36/392 (9%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A   + + L+ +C  FK     + +H H+ +  F     +GN  L++Y++ G+       
Sbjct: 58  ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS------- 110

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
                                   L+ A KVF+++P+ D V+W ++ISGY+       AL
Sbjct: 111 ------------------------LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 146

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
             F++M   G  P+ FT S ++   ++    C G Q+HG  ++ G   SNV +G++L+D+
Sbjct: 147 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD-SNVHVGSALLDL 205

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y + G++  A  VF  +E  + +SWN+LI+G       E AL+ F  M   G+ P  ++ 
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + +  AC+    L++GK V A  +K G    +   +  +D+++K   + D+ ++F++L +
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
            D    N +++ Y ++GFG+ A+  F+ M R  IRP E +   VL++      ++ G  +
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           + +  K G    A    +++++  + G ++ +
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 176/349 (50%), Gaps = 19/349 (5%)

Query: 242 YSP-DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           Y P D    + ++  CT  + L +G+ V A  ++  F  + ++ +  +++++KC  LE++
Sbjct: 55  YIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEA 114

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            ++FE++ + D+     +IS Y ++     AL  F  MLR    P EFTLS V+ +    
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA---A 171

Query: 361 PVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             E     G Q H   +K GFDSN  V S+L+++Y + G +D +  +F  L+ R+ VSWN
Sbjct: 172 AAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWN 231

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  +     + L++F+ +L +G  P   + A++  AC+  GF+++G  V +     
Sbjct: 232 ALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHA----- 286

Query: 477 YGVMPGEEHYA----CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           Y +  GE+  A     ++D+  ++G +  A  I   +  +   S W S+L A A +G  K
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQHGFGK 345

Query: 533 LTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
                 E M  + + P+ + +  +  A +  G  +      ++M+K+GI
Sbjct: 346 EAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 394


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 180/595 (30%), Positives = 303/595 (50%), Gaps = 38/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H  L KLGF + T L N  +D+Y++ G                                
Sbjct: 26  LHAALMKLGFGSDTMLNNNLIDMYAKCG-------------------------------K 54

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A +VFD +PE +VVSW +++ G+   G +   L +F +M+  G  P+ FT S  L  
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 114

Query: 157 VSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G QIHG  +R+G    +VV  NSL+ MY K      A  VF  +   ++ +WN
Sbjct: 115 CGGGTRAGVQIHGVCVRTGFEGHDVV-ANSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 173

Query: 216 SLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSV 273
           S+ISG  ++G G  +L  F  M R     PDE+T + ++ AC+ L    +G QV A ++V
Sbjct: 174 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 233

Query: 274 K-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           + V   SN+I+  A +D++ KC+RL  ++++F+ L+R +      +I  + + G  + A+
Sbjct: 234 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 293

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF+      +R     LS V++       VE G Q H    K+    +  VA+SL++MY
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 353

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G    +   F ++  R++VSW  ++ G+ ++G   E +D+FEE+ EEG+  D +   
Sbjct: 354 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYL 413

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           A+L AC++ G VD+    FS + ++  + P  EHYAC++DLL +AG+L +A ++  +MP 
Sbjct: 414 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPM 473

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W+++L A  ++ DV +   V + ++ +   +P+ Y +L+   A  G W     +
Sbjct: 474 EPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGI 533

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTF-NAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  MR+ G+ K  GCSW  +   ++ F   G+  H     I   LR +   M + 
Sbjct: 534 RGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRER 588



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 194/386 (50%), Gaps = 11/386 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G Q+H ++++ G   S+ +L N+LIDMY K G L+ A  VF  M E +++SW +L+ G  
Sbjct: 23  GVQLHAALMKLGFG-SDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFL 81

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           + G     L  F  MR SG SP+E+T+S  + AC        G Q+  + V+ GF  + +
Sbjct: 82  HHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDV 139

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM-LRE 341
           V ++ + ++SK     D+ R+F+ +   + A  N MIS Y   G G  +L +F+ M  R 
Sbjct: 140 VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 199

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD--SNAVVASSLMEMYAKTGSID 398
           D +P EFT + +L +   +     G+Q H+     G    SNA++A +L+++Y K   + 
Sbjct: 200 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLP 259

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + ++F  L++R+ + W T+++G  Q G+  E + +F      G+  D   L++V+    
Sbjct: 260 VAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFA 319

Query: 459 YGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
               V++G  V     K   G+     +   ++D+  + G  G+A      MP +   S 
Sbjct: 320 DFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGEAGRRFREMPARNVVS- 376

Query: 518 WESILRASAIYGDVKLTENVAERMMD 543
           W +++     +G  +   ++ E M +
Sbjct: 377 WTAMINGVGKHGHGREAIDLFEEMQE 402



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 140/287 (48%), Gaps = 6/287 (2%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           I+ ++ A  +  +L  G Q+ A  +K+GF S++++ +  ID+++KC +L  +  +F+ + 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF 368
             +      ++  +  +G     L LF  M      P EFTLS  L +        G Q 
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG-GGTRAGVQI 125

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H + +++GF+ + VVA+SL+ MY+K      +  +F  +  R+L +WN+++ G    G+ 
Sbjct: 126 HGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQG 185

Query: 429 AETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY- 486
            ++L VF E+       PD  T A++L AC+  G   +G  V +AM    GV P      
Sbjct: 186 RDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR-GVSPASNAIL 244

Query: 487 -ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
              ++D+  +  +L  A+ +   +  +     W +++   A  G VK
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQ-WTTVIVGHAQEGQVK 290



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 39/200 (19%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F   +  K +H +  K        + N  +D+Y + G + +  + F E+P +N +SW   
Sbjct: 321 FALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 380

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQG 142
           + G+ K  +   A+ +F+E+     E D V++ +++S  +  G  D     FS++ Q + 
Sbjct: 381 INGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 440

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           +RP    +         AC                        ++D+ G+ G L  A  +
Sbjct: 441 MRPKAEHY---------AC------------------------MVDLLGRAGELREAKEL 467

Query: 203 FLNME-ELDIISWNSLISGC 221
            L+M  E  +  W +L+S C
Sbjct: 468 ILSMPMEPTVGVWQTLLSAC 487


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/505 (30%), Positives = 283/505 (56%), Gaps = 5/505 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+ +L+ A KVF+ IP  +VVSW SM+SG    G++   L +F+KM+   V PS +T + 
Sbjct: 179 KAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIAT 238

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +++  S+      G+ +HGS+I+ GL +SN  +  +L+DMY K G L  A  VF  +  +
Sbjct: 239 VITACSALIGLHQGRWMHGSVIKQGL-MSNSFISAALLDMYVKCGELEDAQCVFDELSYI 297

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ W ++I G   +G    AL  F   +++   P+  TI+ V++A  +LR+L  G+ + 
Sbjct: 298 DLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIH 357

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            ++VK+G +  ++V++A +D+++KC  + ++ R+F  +   D    N M+S Y       
Sbjct: 358 GIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCN 417

Query: 330 VALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF+ M  +   P   ++   LS S+ +  +  G  FH  A+K  F SN  V+++L+
Sbjct: 418 DALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALL 477

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            +Y K G + S+  +F +++ R+ V+W  ++ G    G +A ++D+F E+L++G+ P+ +
Sbjct: 478 NLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDV 537

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              ++L  C++ G V      F +M + + + P  +HYAC++D+L +AG L +A++    
Sbjct: 538 AFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDN 597

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP Q   S+W + L    ++  ++  E   +RMM L    P  Y L++  Y   G WE  
Sbjct: 598 MPMQADTSVWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKS 657

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKN 593
             +++ M++ G+ K+ G S IG +N
Sbjct: 658 QAIRRWMQEKGLVKLPGYSSIGREN 682



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 190/368 (51%), Gaps = 9/368 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG---FTFSI 152
           +L +A  VFD  P PD  S+  M+           A+ +   M+ +   P     F  S+
Sbjct: 79  DLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSL 138

Query: 153 LL-STVSSA--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L + + SA   +G ++H   ++ G +   V+  NSL+DMY K G L  A  VF  +   
Sbjct: 139 ALKACIRSADYGYGTRLHCDAVKVGGADGFVM--NSLVDMYAKAGDLECARKVFERIPGR 196

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +++SW S++SGC  +G+    L  F  MR     P EYTI+ VI AC+ L  L +G+ + 
Sbjct: 197 NVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMH 256

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G +SNS + +A +D++ KC  LED+  +F++L   D  +   MI  Y + G   
Sbjct: 257 GSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPL 316

Query: 330 VALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF      +I P   T++ VLS S  +  +  G   H +A+K G     VV ++L+
Sbjct: 317 DALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALV 376

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK  ++  +  IF  +  +D+V+WN+++ G  +N    + L +F+++  +G  PD I
Sbjct: 377 DMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAI 436

Query: 449 TLAAVLLA 456
           ++   L A
Sbjct: 437 SVVHALSA 444



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 211/476 (44%), Gaps = 50/476 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C +       + +HG + K G  +++++    LD+Y + G  +D   +FDE+  
Sbjct: 237 ATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSY 296

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + + W                                +MI GY   G    AL +F   
Sbjct: 297 IDLVLW-------------------------------TTMIVGYTQNGNPLDALRLFLDK 325

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +   + P+  T + +LS    +     G+ IHG  ++ GL    VV+ N+L+DMY K   
Sbjct: 326 KFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVV-NALVDMYAKCQA 384

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F ++   D+++WNS++SG   +     AL  F  M   G SPD  ++   ++A
Sbjct: 385 VSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSA 444

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              L +L  GK     +VK  FLSN  V +A ++L++KC  L  + R+F++++  +    
Sbjct: 445 SVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTW 504

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAI 373
             MI  YG  G    +++LF  ML++ + P +   + +LS+     +   ++  F SMA 
Sbjct: 505 CAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQ 564

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETL 432
                 +    + ++++ A+ G+++ + E    +  + D   W   + G   + R    L
Sbjct: 565 HFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSR----L 620

Query: 433 DVFEELLEEGL-----PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV-MPG 482
              EE ++  +      PD   L + L   N  G  +K   +   M+E+  V +PG
Sbjct: 621 QFGEEAIKRMMVLHPERPDLYVLISNLYTSN--GMWEKSQAIRRWMQEKGLVKLPG 674



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 99/176 (56%), Gaps = 6/176 (3%)

Query: 331 ALELFQLMLREDIRPT---EFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
           A+ L Q M R    P    +F LS  L + I      +G++ H  A+K G  ++  V +S
Sbjct: 114 AVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGYGTRLHCDAVKVG-GADGFVMNS 172

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MYAK G ++ + ++F ++  R++VSW +++ G  QNG AA+ L +F ++ ++ +PP 
Sbjct: 173 LVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPS 232

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
             T+A V+ AC+    + +G  +  ++ ++ G+M      A ++D+  + G+L  A
Sbjct: 233 EYTIATVITACSALIGLHQGRWMHGSVIKQ-GLMSNSFISAALLDMYVKCGELEDA 287


>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 695

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/614 (28%), Positives = 308/614 (50%), Gaps = 44/614 (7%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    + GF   +++G+  ++LYSR G                              
Sbjct: 113 EQVHSLAVRAGFAGDSWVGSSLVELYSRCG------------------------------ 142

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            +L  A  VFD +  PDVV + S++S +   G  + A++   +M  QGV P+  T + +L
Sbjct: 143 -DLGAAKGVFDRMESPDVVGYTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASIL 201

Query: 155 STVSSACHGKQIHGSMIRS-GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +      G+Q+H  MI++ GL   ++   ++LID Y +      A  VF N+   ++++
Sbjct: 202 GSCCPFVLGEQVHAYMIKAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVT 261

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALS 272
           W S++      G  E AL  F  M   G   P+E+  SI + AC    ++  G+Q+ + +
Sbjct: 262 WCSMMQLHIRDGRPEDALQVFDDMISEGVVEPNEFAFSIALGACG---SIALGRQLHSSA 318

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K    S+  V +A + ++ +   +++   + + ++  D       IS   + GF E A+
Sbjct: 319 IKRNLTSDLRVSNALLSMYGRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAI 378

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            L  ++    + P ++  S  LSS   +  ++ G QFH +A+K G D      ++L+ +Y
Sbjct: 379 ALLSMLHSRGLMPNDYAFSSALSSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLY 438

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITL 450
           +K G I  +   F  +D RD+ SWN+++ G  Q+G A+  L VF E+    G  PD  + 
Sbjct: 439 SKCGQIAPAKLAFDVMDHRDVTSWNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSF 498

Query: 451 AAVLLACNYGGFVDKGMLVFSAM--KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
             VL ACN+ G V++G+ +F A+    ++G  P   HYAC++D++ ++G+   A+ +   
Sbjct: 499 LGVLAACNHAGMVNEGVALFRAIASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEE 558

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL----QLPSPLPYSLLTQAYAMRGR 564
           MPF+PG  IW+++L +  ++G+++  E  AER+M+L    +      Y L++  +AMRG 
Sbjct: 559 MPFRPGALIWKTLLASCRLHGNLETGELAAERLMELSEGGEDRDSASYVLMSGIHAMRGE 618

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           W    RV++ M + G+ K  GCSW+ + N ++TF A +  H     IY +L  L   M+D
Sbjct: 619 WRDAYRVRRRMDEAGVRKEAGCSWVEVHNEVHTFVARDKSHPDSASIYQILWELFDAMQD 678

Query: 625 EGCVYLECDKLDVE 638
             C   + +  D+ 
Sbjct: 679 TACDAEDAELFDLH 692



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 228/471 (48%), Gaps = 14/471 (2%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L+KS +L  AL +FD +P  ++V+W S +SG    G  + A+  F+ M   GV P+ F F
Sbjct: 37  LMKSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAPNDFAF 96

Query: 151 SILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           +  L+  + A     G+Q+H   +R+G +  + V G+SL+++Y + G L  A GVF  ME
Sbjct: 97  NAALAACADASALRAGEQVHSLAVRAGFAGDSWV-GSSLVELYSRCGDLGAAKGVFDRME 155

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D++ + SL+S    SG  ELA+D  + M   G  P+E+T++ ++ +C        G+Q
Sbjct: 156 SPDVVGYTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPFV---LGEQ 212

Query: 268 VFALSVK-VGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           V A  +K +G  S S+   SA ID +S+ +  + +  +F  L   +      M+  + R 
Sbjct: 213 VHAYMIKAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRD 272

Query: 326 GFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G  E AL++F  M+ E  + P EF  S  L +     +  G Q HS AIK    S+  V+
Sbjct: 273 GRPEDALQVFDDMISEGVVEPNEFAFSIALGA--CGSIALGRQLHSSAIKRNLTSDLRVS 330

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+ MY +   +     +   ++  D+VSW T +    QNG + + + +   L   GL 
Sbjct: 331 NALLSMYGRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLM 390

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+    ++ L +C     +D+G   F  +  + G          +I+L  + GQ+  A  
Sbjct: 391 PNDYAFSSALSSCADLALLDQGR-QFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKL 449

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
               M  +   S W S++   A +GD  +   V   M  ++   P   S L
Sbjct: 450 AFDVMDHRDVTS-WNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFL 499



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 158/303 (52%), Gaps = 11/303 (3%)

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           + A HG+       R  +    VV     +D   K G L  A  +F  M   +I++W S 
Sbjct: 11  APASHGRP------RRRVEPPEVVHDCKRLDRLMKSGSLGDALDLFDRMPRKNIVAWTSA 64

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           +SG   +G  E A+  F  M  SG +P+++  +  + AC     L  G+QV +L+V+ GF
Sbjct: 65  VSGLTRNGRPEAAMAAFADMVASGVAPNDFAFNAALAACADASALRAGEQVHSLAVRAGF 124

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             +S V S+ ++L+S+C  L  +  +F++++  D      ++S + R G  E+A++    
Sbjct: 125 AGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTSLVSAFCRSGEFELAVDTLHQ 184

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS-GFDSNAVVASS-LMEMYAKTG 395
           MLR+ + P E T++ +L S    P   G Q H+  IK+ G  S ++ ASS L++ Y++  
Sbjct: 185 MLRQGVEPNEHTMASILGS--CCPFVLGEQVHAYMIKAMGLHSQSMYASSALIDFYSRNS 242

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVL 454
             D +  +F  L  +++V+W ++M    ++GR  + L VF++++ EG + P+    +  L
Sbjct: 243 EFDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFDDMISEGVVEPNEFAFSIAL 302

Query: 455 LAC 457
            AC
Sbjct: 303 GAC 305



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 200/447 (44%), Gaps = 62/447 (13%)

Query: 31  FDFAKTIHGHLFK-LGFNAHT-YLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           F   + +H ++ K +G ++ + Y  +  +D YSR    D    +F+ +  KN ++W   +
Sbjct: 207 FVLGEQVHAYMIKAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMM 266

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           +  ++    + AL+VFD++    V                              V P+ F
Sbjct: 267 QLHIRDGRPEDALQVFDDMISEGV------------------------------VEPNEF 296

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            FSI L    S   G+Q+H S I+  L+ S++ + N+L+ MYG++  +     V  ++E 
Sbjct: 297 AFSIALGACGSIALGRQLHSSAIKRNLT-SDLRVSNALLSMYGRICHVQELEAVLKDIEN 355

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            DI+SW + IS  F +G+ E A+     +   G  P++Y  S  +++C  L  LD+G+Q 
Sbjct: 356 PDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSALSSCADLALLDQGRQF 415

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
             L++K+G        +A I+L+SKC ++  +   F+ +D  D    N +I  Y ++G  
Sbjct: 416 HCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTSWNSLIHGYAQHGDA 475

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            +AL++F  M    IR TE   S  L  +        +  H+  +  G      +AS   
Sbjct: 476 SMALQVFGEM--RSIRGTEPDESSFLGVL-------AACNHAGMVNEGVALFRAIAS--- 523

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
             +++ G+  S +     +D          MMG  ++GR  + L + EE+      P  +
Sbjct: 524 --HSQHGATPSPSHYACVVD----------MMG--RSGRFDDALRLVEEM---PFRPGAL 566

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKE 475
               +L +C   G ++ G L    + E
Sbjct: 567 IWKTLLASCRLHGNLETGELAAERLME 593



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 87/244 (35%), Gaps = 55/244 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C      D  +  H    KLG +     GN  ++LYS+ G        FD +  
Sbjct: 397 SSALSSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDH 456

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++  SWN  + G  +  +   AL+VF E+                               
Sbjct: 457 RDVTSWNSLIHGYAQHGDASMALQVFGEM------------------------------R 486

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS------------- 185
            ++G  P   +F  +L    +AC+    H  M+  G++L   +  +S             
Sbjct: 487 SIRGTEPDESSFLGVL----AACN----HAGMVNEGVALFRAIASHSQHGATPSPSHYAC 538

Query: 186 LIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSG---YGELALDQFYSMRYSG 241
           ++DM G+ G    A  +   M      + W +L++ C   G    GELA ++   +   G
Sbjct: 539 VVDMMGRSGRFDDALRLVEEMPFRPGALIWKTLLASCRLHGNLETGELAAERLMELSEGG 598

Query: 242 YSPD 245
              D
Sbjct: 599 EDRD 602


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/612 (28%), Positives = 306/612 (50%), Gaps = 38/612 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C      D  + +H H+ K  F  H    N  + +Y+ FG                
Sbjct: 266 VIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFG---------------- 309

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           ++ A  VF  IP  D++SW +MI+GY   GY   AL +F  +  
Sbjct: 310 ---------------QIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLR 354

Query: 141 QGV-RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           QG  +P+ F F  + S  SS     +GKQ+HG  ++ GL   NV  G SL DMY K G L
Sbjct: 355 QGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLR-RNVFAGCSLCDMYAKFGFL 413

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A   F  ++  DI+SWN++I+   ++G    A+D F  M + G +PD  T   ++  C
Sbjct: 414 PSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTC 473

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-WDYAVI 315
                L++G+Q+ +  VK+GF     V ++ + +++KC+ L D++ +F  + R  +    
Sbjct: 474 GSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSW 533

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N ++S   +         L++ M     +P   T++ +L +   +  +  G+Q H  +IK
Sbjct: 534 NAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIK 593

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG   +  V + L++MYAK GS+  + ++F      D+VSW+++++G  Q G   E L++
Sbjct: 594 SGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNL 653

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +   G+ P+ +T    L AC++ G V++G  ++ +M+ E+G+ P  EH++CI+DLL 
Sbjct: 654 FRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLA 713

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A             + W+++L A   + +V + E  A  ++ L   +     +
Sbjct: 714 RAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVM 773

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   +A  G WE + +++K+M++ G+ KV G SWI +K++ + F + +  H     IY +
Sbjct: 774 LCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTM 833

Query: 615 LRLLTWEMEDEG 626
           L  L  ++ D+G
Sbjct: 834 LEELWSQVLDDG 845



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 198/404 (49%), Gaps = 16/404 (3%)

Query: 131 ALEMFS---KMQLQGVRPSGFTFSIL-LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
           ALE F    K       PS +T  +L  +   S  + K+IH  +++S    S ++L N +
Sbjct: 142 ALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPS-IILQNHM 200

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I+MYGK G +  A  VF  M+  +++SW S+ISG   +G    A+  +  M  SG  PD+
Sbjct: 201 INMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQ 260

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T   VI AC    ++D G+Q+ A  +K  F  +    +A I +++   ++E +  +F +
Sbjct: 261 LTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTR 320

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSI-PIPPVEH 364
           +   D      MI+ Y + G+   AL LF+ +LR+   +P EF    V S+   +  +E+
Sbjct: 321 IPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEY 380

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H M +K G   N     SL +MYAK G + S+   F ++   D+VSWN I+     
Sbjct: 381 GKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFAD 440

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-- 482
           NG A E +D F +++  GL PD IT  ++L  C     +++G  + S     Y V  G  
Sbjct: 441 NGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHS-----YIVKIGFD 495

Query: 483 EEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +E   C  ++ +  +   L  A+++   +        W +IL A
Sbjct: 496 KEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSA 539



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 45/220 (20%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           NK      + L+  C    S      +H +  K G      + N  +D+Y++ G+     
Sbjct: 561 NKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGS----- 615

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                     L  A  VFD     D+VSW+S+I GYA CG    
Sbjct: 616 --------------------------LKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHE 649

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSM-IRSGLSLSNVVLG 183
           AL +F  M   GV+P+  T+   L  +S+  H      G +++ SM    G+  +     
Sbjct: 650 ALNLFRIMTNLGVQPNEVTY---LGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHF- 705

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEEL--DIISWNSLISGC 221
           + ++D+  + G L+ A   F+    L  DI +W +L++ C
Sbjct: 706 SCIVDLLARAGCLHEA-ETFIQKSGLDADITAWKTLLAAC 744


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/615 (28%), Positives = 310/615 (50%), Gaps = 44/615 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    S +    IHG + K+G      + N  L +Y +F               
Sbjct: 220 SSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKF--------------- 264

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                           + L    ++FD++   D VSWN+MI GY+  G  + ++++F +M
Sbjct: 265 ----------------NGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM 308

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             Q  +P   T + +L     +     GK +H  MI SG    +    N LI+MY K G 
Sbjct: 309 VNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE-CDTTASNILINMYAKCGN 366

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +  VF  M+  D +SWNS+I+    +G  + A+  F  M+ +   PD  T  ++++ 
Sbjct: 367 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSM 425

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            T+L +L  GK++     K+GF SN +V +  +D+++KC  + DS+++FE +   D    
Sbjct: 426 STQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITW 485

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV----EHGSQFHSM 371
           N +I++        + L +   M  E + P    ++ +LS +P+  +      G + H  
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRMRTEGVTPD---MATMLSILPVCSLLAAKRQGKEIHGC 542

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G +S+  V + L+EMY+K GS+ +S ++F  +  +D+V+W  ++      G   + 
Sbjct: 543 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 602

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           +  F E+   G+ PD +   A++ AC++ G V++G+  F  MK++Y + P  EHYAC++D
Sbjct: 603 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 662

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL ++  L KA D   +MP +P  SIW ++L A  + GD ++ E V+ER+++L       
Sbjct: 663 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGY 722

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y L++  YA  G+W+ +  ++K ++  G+ K  GCSW+ I+N++Y F  G       +++
Sbjct: 723 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 782

Query: 612 YLVLRLLTWEMEDEG 626
             +L +L   M  EG
Sbjct: 783 NKLLGMLAGLMAKEG 797



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/519 (27%), Positives = 253/519 (48%), Gaps = 46/519 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C     F+ AK+IH  +  +GF +  Y+GN  +D+Y RF   D   ++F+E+P ++
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               NS+ISGY + GY + ALE++ + + 
Sbjct: 181 VVSW-------------------------------NSLISGYNANGYWNEALEIYYRFRN 209

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P  +T S +L     + S   G  IHG + + G+   +V++ N L+ MY K   L 
Sbjct: 210 LGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK-KDVIVNNGLLSMYCKFNGLI 268

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               +F  M   D +SWN++I G    G  E ++  F  M  + + PD  TI+ ++ AC 
Sbjct: 269 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACG 327

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +L+ GK V    +  G+  ++   +  I++++KC  L  S  +F  +   D    N 
Sbjct: 328 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 387

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           MI+ Y + G  + A++LF+ M++ D++P   T   +LS S  +  +  G + H    K G
Sbjct: 388 MINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMG 446

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+SN VV+++L++MYAK G +  S ++F  +  RD+++WNTI+     +      L +  
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 506

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLL 493
            +  EG+ PD  T+ ++L  C+      +G  +   + +   E  V  G      +I++ 
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGN----VLIEMY 562

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
            + G L  +  +   M  +   + W +++ A  +YG+ K
Sbjct: 563 SKCGSLRNSFQVFKLMKTKDVVT-WTALISACGMYGEGK 600



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 222/442 (50%), Gaps = 17/442 (3%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG---- 163
           P  +V  WNS+I      G    AL ++S+ Q   ++P  +TF     +V +AC G    
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFP----SVINACAGLLDF 131

Query: 164 ---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
              K IH  ++  G   S++ +GN+LIDMY +   L  A  VF  M   D++SWNSLISG
Sbjct: 132 EMAKSIHDRVLDMGFG-SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +GY   AL+ +Y  R  G  PD YT+S V+ AC  L ++++G  +  L  K+G   +
Sbjct: 191 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 250

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
            IV +  + ++ K N L D  R+F+++   D    N MI  Y + G  E +++LF  M+ 
Sbjct: 251 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 310

Query: 341 EDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           +  +P   T++ +L +   +  +E G   H   I SG++ +   ++ L+ MYAK G++ +
Sbjct: 311 Q-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 369

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           S E+F  +  +D VSWN+++    QNG   E + +F ++++  + PD +T   +L     
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQ 428

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G +  G  +   +  + G          ++D+  + G++G ++ +   M  +   + W 
Sbjct: 429 LGDLHLGKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIIT-WN 486

Query: 520 SILRASAIYGDVKLTENVAERM 541
           +I+ +     D  L   +  RM
Sbjct: 487 TIIASCVHSEDCNLGLRMISRM 508



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 198/441 (44%), Gaps = 41/441 (9%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   + ++  C      +F K +H ++   G+   T   N  +++Y++ G      +
Sbjct: 313 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 372

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  +  K+ +SWN  +   +++ + D A+K+F                           
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF--------------------------- 405

Query: 132 LEMFSKMQLQGVRPSGFTFSILL--STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLID 188
                KM    V+P   T+ +LL  ST     H GK++H  + + G + SN+V+ N+L+D
Sbjct: 406 -----KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFN-SNIVVSNTLVD 459

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  +  VF NM+  DII+WN++I+ C +S    L L     MR  G +PD  T
Sbjct: 460 MYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMAT 519

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           +  ++  C+ L    +GK++     K+G  S+  V +  I+++SKC  L +S ++F+ + 
Sbjct: 520 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 579

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-S 366
             D      +IS  G YG G+ A+  F  M    I P       ++ +      VE G +
Sbjct: 580 TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLN 639

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
            FH M      +      + ++++ +++  +D + +  + +  K D   W  ++     +
Sbjct: 640 YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMS 699

Query: 426 GRAAETLDVFEELLEEGLPPD 446
           G       V E ++E  L PD
Sbjct: 700 GDTEIAERVSERIIE--LNPD 718



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 36/268 (13%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + K  V   S++Y   L+            K +H  L K+GFN++  + N  +D+Y++ G
Sbjct: 407 MMKTDVKPDSVTYV-MLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 465

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              D L++F+ +  ++ I+WN  +   + S++ +  L+                      
Sbjct: 466 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR---------------------- 503

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFT-FSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVV 181
                    M S+M+ +GV P   T  SIL   S +++   GK+IHG + + GL  S+V 
Sbjct: 504 ---------MISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-SDVP 553

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +GN LI+MY K G L  +F VF  M+  D+++W +LIS C   G G+ A+  F  M  +G
Sbjct: 554 VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG 613

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF 269
             PD      +I AC+    +++G   F
Sbjct: 614 IVPDHVAFVAIIFACSHSGLVEEGLNYF 641


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 286/538 (53%), Gaps = 6/538 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K +  + A+ +F+E+PE DV  WN++IS Y   G    ALE F  M+  G  P+  T + 
Sbjct: 153 KCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITT 212

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            +S+ +       G +IH  +I SG  L + +  ++L+DMYGK G L  A  +F  M + 
Sbjct: 213 AISSCARLLDLNRGMEIHEELINSGFLLDSFI-SSALVDMYGKCGHLEMAIEIFEQMPKK 271

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            +++WNS+ISG    G     +  F  M   G  P   T+S +I  C++   L +GK V 
Sbjct: 272 TVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             +++     +  V S+ +DL+ KC ++E + ++F+ + +      NVMIS Y   G   
Sbjct: 332 GYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLF 391

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF  M +  +     T + VL++   +  +E G + H++ I+   D+N VV  +L+
Sbjct: 392 EALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALL 451

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G++D +  +F  L KRDLVSW +++     +G A   L++F E+L+  + PDR+
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRV 511

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              A+L AC + G VD+G   F+ M   YG++P  EHY+C+IDLL +AG+L +A +I   
Sbjct: 512 AFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 509 MP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            P  +    +  ++  A  ++ ++ L   +A  ++D        Y LL+  YA   +W+ 
Sbjct: 572 NPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDE 631

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  V+  M++ G+ K  GCSWI I  +I  F   +  H   + ++  L  L+  MEDE
Sbjct: 632 VRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE 689



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/519 (28%), Positives = 251/519 (48%), Gaps = 48/519 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C++ KS    K IH  +  LG     +L    ++ Y                    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQY-------------------- 48

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVS-WNSMISGYASCGYSDYALEMFSKM- 138
                      L     D A  VFD +  P  +S WN +++GY        ALE+F K+ 
Sbjct: 49  -----------LSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLL 97

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
               ++P  +T+     +V  AC G       K IH  +I++GL + ++V+G+SL+ MYG
Sbjct: 98  HYPYLKPDSYTYP----SVFKACGGLHRYVLGKMIHTCLIKTGLMM-DIVVGSSLVGMYG 152

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K      A  +F  M E D+  WN++IS  + SG  + AL+ F  MR  G+ P+  TI+ 
Sbjct: 153 KCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITT 212

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            I++C +L +L++G ++    +  GFL +S + SA +D++ KC  LE ++ +FEQ+ +  
Sbjct: 213 AISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKT 272

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC-VLSSIPIPPVEHGSQFHS 370
               N MIS YG  G     ++LF+ M  E ++PT  TLS  ++       +  G   H 
Sbjct: 273 VVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG 332

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             I++    +  V SSLM++Y K G ++ + +IF  + K  +VSWN ++ G    G+  E
Sbjct: 333 YTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFE 392

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +F E+ +  +  D IT  +VL AC+    ++KG  + + + E+  +   E     ++
Sbjct: 393 ALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEK-KLDNNEVVMGALL 451

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           D+  + G + +A  +   +P +   S W S++ A   +G
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSHG 489



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 192/397 (48%), Gaps = 44/397 (11%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
            ++S C++L+D        +    IH  L   GF   +++ +  +D+Y + G  +  +++
Sbjct: 212 TAISSCARLLD-------LNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEI 264

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F+++P+K  +                               +WNSMISGY   G     +
Sbjct: 265 FEQMPKKTVV-------------------------------AWNSMISGYGLKGDIISCI 293

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           ++F +M  +GV+P+  T S L+   S +     GK +HG  IR+ +   +V + +SL+D+
Sbjct: 294 QLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQ-PDVFVNSSLMDL 352

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  +F  + +  ++SWN +ISG    G    AL  F  MR S    D  T 
Sbjct: 353 YFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITF 412

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + V+ AC++L  L+KGK++  L ++    +N +V+ A +D+++KC  ++++  +F+ L +
Sbjct: 413 TSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPK 472

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS-Q 367
            D      MI+ YG +G    ALELF  ML+ +++P       +LS+      V+ G   
Sbjct: 473 RDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYY 532

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
           F+ M    G        S L+++  + G +  + EI 
Sbjct: 533 FNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEIL 569



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 132/299 (44%), Gaps = 36/299 (12%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K +L+  S LI  C         K +HG+  +       ++ +  +DLY + G  +   +
Sbjct: 305 KPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEK 364

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  IP+   +SWN+                               MISGY + G    A
Sbjct: 365 IFKLIPKSKVVSWNV-------------------------------MISGYVAEGKLFEA 393

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L +FS+M+   V     TF+ +L+  S       GK+IH  +I   L  + VV+G +L+D
Sbjct: 394 LGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMG-ALLD 452

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  AF VF  + + D++SW S+I+   + G+   AL+ F  M  S   PD   
Sbjct: 453 MYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVA 512

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
              +++AC     +D+G   F   + V G +      S  IDL  +  RL ++  + +Q
Sbjct: 513 FLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 143/296 (48%), Gaps = 7/296 (2%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDR- 309
           ++ AC   ++L +GK +    V +G L N I L  T I+ +  C+  + +  +F+ ++  
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLG-LQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENP 67

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSI-PIPPVEHGSQ 367
            + ++ N +++ Y +      ALELF+ +L    ++P  +T   V  +   +     G  
Sbjct: 68  CEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKM 127

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H+  IK+G   + VV SSL+ MY K  + + +  +F ++ ++D+  WNT++    Q+G 
Sbjct: 128 IHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             + L+ F  +   G  P+ +T+   + +C     +++GM +   +    G +      +
Sbjct: 188 FKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINS-GFLLDSFISS 246

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            ++D+  + G L  AI+I   MP +     W S++    + GD+     + +RM +
Sbjct: 247 ALVDMYGKCGHLEMAIEIFEQMP-KKTVVAWNSMISGYGLKGDIISCIQLFKRMYN 301


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 186/622 (29%), Positives = 317/622 (50%), Gaps = 45/622 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           SQL+ +C+  +S    KTI  H+ K GF A                              
Sbjct: 69  SQLLRQCIDERSISGIKTIQAHMLKSGFPAE----------------------------- 99

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
              IS +  +   LK  ++D A +VFD + E  +V+WNS+I+       S  A+EM+  M
Sbjct: 100 ---ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLM 156

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V P  +T S +    S +S     ++ HG  +  GL +SNV +G++L+DMY K G 
Sbjct: 157 ITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGK 216

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  V   +EE D++   +LI G    G    A+  F SM      P+EYT + V+ +
Sbjct: 217 TREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLIS 276

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L+++  GK +  L VK GF S     ++ + ++ +C+ ++DS+R+F+ ++  +    
Sbjct: 277 CGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSW 336

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             +IS   + G  E+AL  F+ M+R+ I+P  FTLS  L     +   E G Q H +  K
Sbjct: 337 TSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTK 396

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GFD +    S L+++Y K G  D +  +F  L + D++S NT++    QNG   E LD+
Sbjct: 397 YGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDL 456

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FE ++  GL P+ +T+ +VLLACN    V++G  +F + +++  +M   +HYAC++DLL 
Sbjct: 457 FERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKD-KIMLTNDHYACMVDLLG 515

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A ++ +T    P   +W ++L A  ++  V++ E +  ++++++        L
Sbjct: 516 RAGRLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLIL 574

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL-QHHGGQKIYL 613
           ++  YA  G+W  ++ +K  M+   + K    SW+ I    +TF AG+L  H   ++I  
Sbjct: 575 MSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILE 634

Query: 614 VLRLLTWE------MEDEGCVY 629
            L  L  +      +ED+ CV+
Sbjct: 635 NLEELIKKSKDLGYVEDKSCVF 656



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 146/333 (43%), Gaps = 38/333 (11%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +Y S LI  C + K     K IHG + K GF +        L +Y R    DD L++F  
Sbjct: 269 TYASVLIS-CGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKC 327

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           I   N +SW                                S+ISG    G  + AL  F
Sbjct: 328 IEYPNQVSW-------------------------------TSLISGLVQNGREEMALIEF 356

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KM    ++P+ FT S  L   S+      G+QIHG + + G        G+ LID+YGK
Sbjct: 357 RKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYA-GSGLIDLYGK 415

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G    A  VF  + E+D+IS N++I     +G+G  ALD F  M   G  P++ T+  V
Sbjct: 416 CGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSV 475

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC   R +++G ++F    K   +  +   +  +DL  +  RLE++  L  ++   D 
Sbjct: 476 LLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDL 535

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
            +   ++S    +   E+A  + + +L  +I P
Sbjct: 536 VLWRTLLSACKVHRKVEMAERITRKIL--EIEP 566


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 306/605 (50%), Gaps = 45/605 (7%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + + IHG + K+GF++   + N  L +Y+  G S +                        
Sbjct: 279 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA----------------------- 315

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
              NL     VF ++P  D++SWNS+++ + + G S  AL +   M   G   +  TF+ 
Sbjct: 316 ---NL-----VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTS 367

Query: 153 LLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            L+    AC        G+ +HG ++ SGL   N ++GN+L+ MYGK+G +  +  V L 
Sbjct: 368 ALA----ACFTPDFFEKGRILHGLVVVSGL-FYNQIIGNALVSMYGKIGEMSESRRVLLQ 422

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL-DK 264
           M   D+++WN+LI G       + AL  F +MR  G S +  T+  V++AC    +L ++
Sbjct: 423 MPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLER 482

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK + A  V  GF S+  V ++ I +++KC  L  S  LF  LD  +    N M++    
Sbjct: 483 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 542

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G GE  L+L   M    +   +F+ S  LS+   +  +E G Q H +A+K GF+ ++ +
Sbjct: 543 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 602

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++  +MY+K G I    ++      R L SWN ++  L ++G   E    F E+LE G+
Sbjct: 603 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 662

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P  +T  ++L AC++GG VDKG+  +  +  ++G+ P  EH  C+IDLL ++G+L +A 
Sbjct: 663 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 722

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
              S MP +P   +W S+L +  I+G++      AE +  L+      Y L +  +A  G
Sbjct: 723 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 782

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RWE +  V+K M    I K   CSW+ +K+++ +F  G+  H    +IY  L  +   ++
Sbjct: 783 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 842

Query: 624 DEGCV 628
           + G V
Sbjct: 843 ESGYV 847



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 206/419 (49%), Gaps = 15/419 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N+D A  +FD++ E D +SWNS+ + YA  G+ + +  +FS M+      +  T S LLS
Sbjct: 210 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 269

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +    H   G+ IHG +++ G   S V + N+L+ MY   G    A  VF  M   D+I
Sbjct: 270 VLGHVDHQKWGRGIHGLVVKMGFD-SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 328

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWNSL++   N G    AL    SM  SG S +  T +  + AC      +KG+ +  L 
Sbjct: 329 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 388

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V  G   N I+ +A + ++ K   + +S R+  Q+ R D    N +I  Y      + AL
Sbjct: 389 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKAL 448

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
             FQ M  E +     T+  VLS+  +P   +E G   H+  + +GF+S+  V +SL+ M
Sbjct: 449 AAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 508

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G + SS ++F  LD R++++WN ++     +G   E L +  ++   G+  D+ + 
Sbjct: 509 YAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSF 568

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII----DLLCQAGQLGKAIDI 505
           +  L A      +++G  +         V  G EH + I     D+  + G++G+ + +
Sbjct: 569 SEGLSAAAKLAVLEEGQQLHG-----LAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 622



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 197/384 (51%), Gaps = 10/384 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A  +FD +P  + VSWN+M+SG    G     +E F KM   G++PS F  + 
Sbjct: 4   KFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIAS 63

Query: 153 LLSTVSSAC----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           L++    +      G Q+HG + +SGL LS+V +  +++ +YG  G++  +  VF  M +
Sbjct: 64  LVTACGRSGSMFREGVQVHGFVAKSGL-LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPD 122

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW SL+ G  + G  E  +D +  MR  G   +E ++S+VI++C  L++   G+Q+
Sbjct: 123 RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQI 182

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               VK G  S   V ++ I +      ++ +  +F+Q+   D    N + + Y + G  
Sbjct: 183 IGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHI 242

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH---GSQFHSMAIKSGFDSNAVVAS 385
           E +  +F LM R        T+S +LS   +  V+H   G   H + +K GFDS   V +
Sbjct: 243 EESFRIFSLMRRFHDEVNSTTVSTLLS--VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ MYA  G    +  +F ++  +DL+SWN++M     +GR+ + L +   ++  G   
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV 360

Query: 446 DRITLAAVLLACNYGGFVDKGMLV 469
           + +T  + L AC    F +KG ++
Sbjct: 361 NYVTFTSALAACFTPDFFEKGRIL 384



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 199/430 (46%), Gaps = 55/430 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +   F+  + +HG +   G   +  +GN  + +Y + G   +  ++  ++P+++ ++W
Sbjct: 372 CFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 431

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               ++I GYA     D AL  F  M+++GV 
Sbjct: 432 N-------------------------------ALIGGYAEDEDPDKALAAFQTMRVEGVS 460

Query: 145 PSGFTFSILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +  T    + +V SAC         GK +H  ++ +G   S+  + NSLI MY K G L
Sbjct: 461 SNYIT----VVSVLSACLLPGDLLERGKPLHAYIVSAGFE-SDEHVKNSLITMYAKCGDL 515

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  ++  +II+WN++++   + G+GE  L     MR  G S D+++ S  ++A 
Sbjct: 516 SSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAA 575

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            KL  L++G+Q+  L+VK+GF  +S + +A  D++SKC  + + V++            N
Sbjct: 576 AKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWN 635

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
           ++IS  GR+G+ E     F  ML   I+P   T   +L++      V+ G  ++ M  + 
Sbjct: 636 ILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARD 695

Query: 376 -GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNTIMMGLTQNG------ 426
            G +        ++++  ++G +  +     K+  +  DLV W +++     +G      
Sbjct: 696 FGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGR 754

Query: 427 RAAETLDVFE 436
           +AAE L   E
Sbjct: 755 KAAENLSKLE 764



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 2/249 (0%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A  +F  M   + +SWN+++SG    G     ++ F  M   G  P  + 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 249 ISIVINACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           I+ ++ AC +  ++  +G QV     K G LS+  V +A + L+     +  S ++FE++
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GS 366
              +      ++  Y   G  E  +++++ M  E +   E ++S V+SS  +   E  G 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q     +KSG +S   V +SL+ M    G++D +  IF ++ +RD +SWN+I     QNG
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 427 RAAETLDVF 435
              E+  +F
Sbjct: 241 HIEESFRIF 249



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 39/198 (19%)

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY K G +  +  +F  +  R+ VSWNT+M G+ + G   E ++ F ++ + G+ P    
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           +A+++ AC   G         S  +E  GV         +   + ++G L      T   
Sbjct: 61  IASLVTACGRSG---------SMFRE--GVQ--------VHGFVAKSGLLSDVYVST--- 98

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
                     +IL    +YG V  +  V E M D  + S   ++ L   Y+ +G  E ++
Sbjct: 99  ----------AILHLYGVYGLVSCSRKVFEEMPDRNVVS---WTSLMVGYSDKGEPEEVI 145

Query: 570 RVKKVMRKNGINKVTGCS 587
            + K MR  G+    GC+
Sbjct: 146 DIYKGMRGEGV----GCN 159


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/584 (30%), Positives = 304/584 (52%), Gaps = 42/584 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG+L K GF A + + N  L +Y                                   +
Sbjct: 171 LHGYLIKSGFWAISSVQNSLLSMYV--------------------------------DAD 198

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGVRPSGFTFSILLS 155
           ++ A ++FDE+ E DV++W+ MI GY         L+MF KM L  G+ P G     +L 
Sbjct: 199 MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLK 258

Query: 156 TVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +S+   C G+ +HG +I  G    ++ + NSLIDMY K      AF VF  + + + +
Sbjct: 259 ACASSRDVCTGRLVHGLVIHRGFD-CDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNV 317

Query: 213 SWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           SWNS++SG   N  Y E A     SMR      DE T+  ++  C    +    K +  +
Sbjct: 318 SWNSMLSGFVLNENYSE-AQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCV 376

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            ++ G  +N +VLSA ID ++KC  +E +  +F ++ R D    + MIS +   G  + A
Sbjct: 377 MIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEA 436

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEM 390
           + ++Q M R+ ++P   T+  +L +  +      S++ H +AI+ GF S   V +++++M
Sbjct: 437 IAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDM 496

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K G I +S   F +L  +++V+W+ ++     NG A E L +F E+   GL P+ +T 
Sbjct: 497 YSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTT 556

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            +VL AC++GG V++G+ +F +M +E G+ PG EHY+C++D+L +AG+L  AI++   MP
Sbjct: 557 LSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMP 616

Query: 511 --FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
              + G SIW S+L A   YG  +L +    R+++L+  +   Y + +  YA  G W+  
Sbjct: 617 HNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDA 676

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            R++ + ++ G+  V G S + I N+   F AG+  H    +I+
Sbjct: 677 ARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDEIF 720



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 193/422 (45%), Gaps = 45/422 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S +     + +HG +   GF+   ++ N  +D+YS+   +    ++F+EI Q+N
Sbjct: 256 VLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRN 315

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SWN  L G + ++N                              YS+ A  + S M+ 
Sbjct: 316 NVSWNSMLSGFVLNEN------------------------------YSE-AQSLISSMRK 344

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + V     T   +L          H K IH  MIR G   + +VL ++LID Y K  ++ 
Sbjct: 345 ERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVL-SALIDAYAKCYLIE 403

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ VF  M   D++SW+++ISG  + G  + A+  +  M      P+  TI  ++ AC+
Sbjct: 404 IAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS 463

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L + K    ++++ GF S   V +A +D++SKC  +  S R F+QL   +    + 
Sbjct: 464 VTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSA 523

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKS 375
           MI+ YG  G    AL LF  M R  ++P   T   VL++      VE G S F SM  + 
Sbjct: 524 MIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQEL 583

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIM-----MGLTQNGR 427
           G +      S +++M  + G +D++ E+   +    K     W +++      GLT+ G+
Sbjct: 584 GLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGK 643

Query: 428 AA 429
            A
Sbjct: 644 EA 645



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 360 PPV---------EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK- 409
           PP+          HG   H+  IK GFDS   + +S+M  Y + G  D + ++F  + + 
Sbjct: 52  PPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRS 111

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           RD VSWN ++ G   NG     L  F      G  P+  T+  V+ AC   G    G+++
Sbjct: 112 RDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLIL 171


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 289/546 (52%), Gaps = 8/546 (1%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           +   L   +++ A K F E+ EPD++ WN++I GY      D  + M+  MQ+  V P+ 
Sbjct: 26  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNC 85

Query: 148 FTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTF  +L      S    GKQIHG   + G   SNV + NSL+ MY K G + YA  VF 
Sbjct: 86  FTFLYVLKACGGTSVEGIGKQIHGQTFKYGFG-SNVFVQNSLVSMYAKFGQISYARIVFD 144

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            + +  ++SW S+ISG   +G    AL+ F  MR     PD   +  V+ A T + +L +
Sbjct: 145 KLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 204

Query: 265 GKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           GK +  L  K+G      IV+S T  +++K   +E +   F ++++ +  + N MIS Y 
Sbjct: 205 GKSIHGLVTKLGLEFEPDIVISLTT-MYAKRGLVEVARFFFNRMEKPNLILWNAMISGYA 263

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
             G+GE A++LF+ M+ ++IR    T+ S VL+S  +  +E          KS +  +  
Sbjct: 264 NNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTF 323

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V + L++MYAK GSI  +  +F ++  +D+V W+ ++MG   +G   E + ++ E+ + G
Sbjct: 324 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 383

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + P+  T   +L AC   G V +G  +F  M  ++G+ P  +HY+C++DLL +AG L +A
Sbjct: 384 VCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQA 442

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            D   +MP +PG S+W ++L A  I+  V+L E  AE++  L   +   Y  L+  YA  
Sbjct: 443 YDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASA 502

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
             W  +  V+ +M + G+NK  G S I I   + TF  G+  H   ++I+  L  L   +
Sbjct: 503 HLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRL 562

Query: 623 EDEGCV 628
           +  G V
Sbjct: 563 KAAGYV 568



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 184/393 (46%), Gaps = 41/393 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHG  FK GF ++ ++ N  + +Y++FG       +FD++  +  +SW   + G ++
Sbjct: 104 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 163

Query: 94  SDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           + +   AL VF E+ +    PD ++  S+++ Y                           
Sbjct: 164 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAY--------------------------- 196

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
                + V     GK IHG + + GL    ++V+  SL  MY K G++  A   F  ME+
Sbjct: 197 -----TNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFNRMEK 249

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            ++I WN++ISG  N+GYGE A+  F  M       D  T+   + A  ++ +L+  + +
Sbjct: 250 PNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWL 309

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
                K  +  ++ V +  ID+++KC  +  +  +F+++   D  + +VMI  YG +G G
Sbjct: 310 DGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHG 369

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSL 387
           + A+ L+  M +  + P + T   +L++      V+ G +   +    G + +    S +
Sbjct: 370 QEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCV 429

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
           +++  + G ++ + +  + +  +  VS W  ++
Sbjct: 430 VDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALL 462


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 306/605 (50%), Gaps = 45/605 (7%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + + IHG + K+GF++   + N  L +Y+  G S +                        
Sbjct: 262 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA----------------------- 298

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
              NL     VF ++P  D++SWNS+++ + + G S  AL +   M   G   +  TF+ 
Sbjct: 299 ---NL-----VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTS 350

Query: 153 LLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            L+    AC        G+ +HG ++ SGL   N ++GN+L+ MYGK+G +  +  V L 
Sbjct: 351 ALA----ACFTPDFFEKGRILHGLVVVSGL-FYNQIIGNALVSMYGKIGEMSESRRVLLQ 405

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL-DK 264
           M   D+++WN+LI G       + AL  F +MR  G S +  T+  V++AC    +L ++
Sbjct: 406 MPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLER 465

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK + A  V  GF S+  V ++ I +++KC  L  S  LF  LD  +    N M++    
Sbjct: 466 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 525

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G GE  L+L   M    +   +F+ S  LS+   +  +E G Q H +A+K GF+ ++ +
Sbjct: 526 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 585

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++  +MY+K G I    ++      R L SWN ++  L ++G   E    F E+LE G+
Sbjct: 586 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 645

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P  +T  ++L AC++GG VDKG+  +  +  ++G+ P  EH  C+IDLL ++G+L +A 
Sbjct: 646 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 705

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
              S MP +P   +W S+L +  I+G++      AE +  L+      Y L +  +A  G
Sbjct: 706 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 765

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RWE +  V+K M    I K   CSW+ +K+++ +F  G+  H    +IY  L  +   ++
Sbjct: 766 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 825

Query: 624 DEGCV 628
           + G V
Sbjct: 826 ESGYV 830



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 206/419 (49%), Gaps = 15/419 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N+D A  +FD++ E D +SWNS+ + YA  G+ + +  +FS M+      +  T S LLS
Sbjct: 193 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 252

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +    H   G+ IHG +++ G   S V + N+L+ MY   G    A  VF  M   D+I
Sbjct: 253 VLGHVDHQKWGRGIHGLVVKMGFD-SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 311

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWNSL++   N G    AL    SM  SG S +  T +  + AC      +KG+ +  L 
Sbjct: 312 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 371

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V  G   N I+ +A + ++ K   + +S R+  Q+ R D    N +I  Y      + AL
Sbjct: 372 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKAL 431

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
             FQ M  E +     T+  VLS+  +P   +E G   H+  + +GF+S+  V +SL+ M
Sbjct: 432 AAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 491

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G + SS ++F  LD R++++WN ++     +G   E L +  ++   G+  D+ + 
Sbjct: 492 YAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSF 551

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII----DLLCQAGQLGKAIDI 505
           +  L A      +++G  +         V  G EH + I     D+  + G++G+ + +
Sbjct: 552 SEGLSAAAKLAVLEEGQQLHG-----LAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 605



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 191/370 (51%), Gaps = 10/370 (2%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC----H 162
           +P  + VSWN+M+SG    G     +E F KM   G++PS F  + L++    +      
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G Q+HG + +SGL LS+V +  +++ +YG  G++  +  VF  M + +++SW SL+ G  
Sbjct: 61  GVQVHGFVAKSGL-LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           + G  E  +D +  MR  G   +E ++S+VI++C  L++   G+Q+    VK G  S   
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLA 179

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V ++ I +      ++ +  +F+Q+   D    N + + Y + G  E +  +F LM R  
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 239

Query: 343 IRPTEFTLSCVLSSIPIPPVEH---GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
                 T+S +LS   +  V+H   G   H + +K GFDS   V ++L+ MYA  G    
Sbjct: 240 DEVNSTTVSTLLS--VLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVE 297

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           +  +F ++  +DL+SWN++M     +GR+ + L +   ++  G   + +T  + L AC  
Sbjct: 298 ANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFT 357

Query: 460 GGFVDKGMLV 469
             F +KG ++
Sbjct: 358 PDFFEKGRIL 367



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 220/433 (50%), Gaps = 8/433 (1%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VS 158
           KVF+E+P+ +VVSW S++ GY+  G  +  ++++  M+ +GV  +  + S+++S+   + 
Sbjct: 98  KVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLK 157

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               G+QI G +++SGL  S + + NSLI M G +G + YA  +F  M E D ISWNS+ 
Sbjct: 158 DESLGRQIIGQVVKSGLE-SKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIA 216

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +    +G+ E +   F  MR      +  T+S +++    + +   G+ +  L VK+GF 
Sbjct: 217 AAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFD 276

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           S   V +  + +++   R  ++  +F+Q+   D    N +++++   G    AL L   M
Sbjct: 277 SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSM 336

Query: 339 LREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           +         T +  L++   P   E G   H + + SG   N ++ ++L+ MY K G +
Sbjct: 337 ISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEM 396

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             S  + +++ +RD+V+WN ++ G  ++    + L  F+ +  EG+  + IT+ +VL AC
Sbjct: 397 SESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 456

Query: 458 NY-GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
              G  +++G  + + +    G    E     +I +  + G L  + D+ + +       
Sbjct: 457 LLPGDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNII 514

Query: 517 IWESILRASAIYG 529
            W ++L A+A +G
Sbjct: 515 TWNAMLAANAHHG 527



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 199/430 (46%), Gaps = 55/430 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +   F+  + +HG +   G   +  +GN  + +Y + G   +  ++  ++P+++ ++W
Sbjct: 355 CFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 414

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               ++I GYA     D AL  F  M+++GV 
Sbjct: 415 N-------------------------------ALIGGYAEDEDPDKALAAFQTMRVEGVS 443

Query: 145 PSGFTFSILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +  T    + +V SAC         GK +H  ++ +G   S+  + NSLI MY K G L
Sbjct: 444 SNYIT----VVSVLSACLLPGDLLERGKPLHAYIVSAGFE-SDEHVKNSLITMYAKCGDL 498

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  ++  +II+WN++++   + G+GE  L     MR  G S D+++ S  ++A 
Sbjct: 499 SSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAA 558

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            KL  L++G+Q+  L+VK+GF  +S + +A  D++SKC  + + V++            N
Sbjct: 559 AKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWN 618

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
           ++IS  GR+G+ E     F  ML   I+P   T   +L++      V+ G  ++ M  + 
Sbjct: 619 ILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARD 678

Query: 376 -GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNTIMMGLTQNG------ 426
            G +        ++++  ++G +  +     K+  +  DLV W +++     +G      
Sbjct: 679 FGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGR 737

Query: 427 RAAETLDVFE 436
           +AAE L   E
Sbjct: 738 KAAENLSKLE 747


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/584 (30%), Positives = 304/584 (52%), Gaps = 42/584 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG+L K GF A + + N  L +Y                                   +
Sbjct: 171 LHGYLIKSGFWAISSVQNSLLSMYV--------------------------------DAD 198

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGVRPSGFTFSILLS 155
           ++ A ++FDE+ E DV++W+ MI GY         L+MF KM L  G+ P G     +L 
Sbjct: 199 MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLK 258

Query: 156 TVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +S+   C G+ +HG +I  G    ++ + NSLIDMY K      AF VF  + + + +
Sbjct: 259 ACASSRDVCTGRLVHGLVIHRGFD-CDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNV 317

Query: 213 SWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           SWNS++SG   N  Y E A     SMR      DE T+  ++  C    +    K +  +
Sbjct: 318 SWNSMLSGFVLNENYSE-AQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCV 376

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            ++ G  +N +VLSA ID ++KC  +E +  +F ++ R D    + MIS +   G  + A
Sbjct: 377 MIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEA 436

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEM 390
           + ++Q M R+ ++P   T+  +L +  +      S++ H +AI+ GF S   V +++++M
Sbjct: 437 IAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDM 496

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K G I +S   F +L  +++V+W+ ++     NG A E L +F E+   GL P+ +T 
Sbjct: 497 YSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTT 556

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            +VL AC++GG V++G+ +F +M +E G+ PG EHY+C++D+L +AG+L  AI++   MP
Sbjct: 557 LSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMP 616

Query: 511 --FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
              + G SIW S+L A   YG  +L +    R+++L+  +   Y + +  YA  G W+  
Sbjct: 617 DNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDA 676

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            R++ + ++ G+  V G S + I N+   F AG+  H    +I+
Sbjct: 677 ARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDEIF 720



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 193/422 (45%), Gaps = 45/422 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S +     + +HG +   GF+   ++ N  +D+YS+   +    ++F+EI Q+N
Sbjct: 256 VLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRN 315

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SWN  L G + ++N                              YS+ A  + S M+ 
Sbjct: 316 NVSWNSMLSGFVLNEN------------------------------YSE-AQSLISSMRK 344

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + V     T   +L          H K IH  MIR G   + +VL ++LID Y K  ++ 
Sbjct: 345 ERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVL-SALIDAYAKCYLIE 403

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ VF  M   D++SW+++ISG  + G  + A+  +  M      P+  TI  ++ AC+
Sbjct: 404 IAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS 463

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
               L + K    ++++ GF S   V +A +D++SKC  +  S R F+QL   +    + 
Sbjct: 464 VTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSA 523

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKS 375
           MI+ YG  G    AL LF  M R  ++P   T   VL++      VE G S F SM  + 
Sbjct: 524 MIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQEL 583

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIM-----MGLTQNGR 427
           G +      S +++M  + G +D++ E+   +    K     W +++      GLT+ G+
Sbjct: 584 GLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGK 643

Query: 428 AA 429
            A
Sbjct: 644 EA 645



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 360 PPV---------EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK- 409
           PP+          HG   H+  IK GFDS   + +S+M  Y + G  D + ++F  + + 
Sbjct: 52  PPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRS 111

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           RD VSWN ++ G   NG     L  F      G  P+  T+  V+ AC   G    G+++
Sbjct: 112 RDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLIL 171


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/612 (28%), Positives = 310/612 (50%), Gaps = 37/612 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C S ++    + IH H   LG +   Y+    L +Y++ G       LF+ I  + 
Sbjct: 113 LLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQ- 171

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                       + D+V+WN+MI+ ++        +   ++MQ 
Sbjct: 172 ----------------------------DRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQ 203

Query: 141 QGVRPSGFTFSILLSTV--SSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P+  T   +L T+  ++A H GK IH   IR+     NVVL  +L+DMY K  +L+
Sbjct: 204 AGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN-FFFDNVVLQTALLDMYAKCHLLF 262

Query: 198 YAFGVFLNMEELDIISWNSLISG--CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           YA  +F  + + + + W+++I G    +S    LAL       Y G +P   T++ ++ A
Sbjct: 263 YARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIY-GLNPTPATLATMLRA 321

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C +L +L +GK++    +K G   ++ V ++ I +++KC  ++++V   +++   D    
Sbjct: 322 CAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSY 381

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           + +IS   + G+ E AL +F+ M    I P   T+  +L +   +  ++HG+  H   + 
Sbjct: 382 SAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVV 441

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GF ++  + +++++MY+K G I  S EIF ++  RD++SWNT+++G   +G   E L +
Sbjct: 442 RGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSL 501

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+EL   GL PD +TL AVL AC++ G V +G   FS+M + + + P   HY C++DLL 
Sbjct: 502 FQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLA 561

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L +A      MPF P   IW ++L A   + ++++ E V++++  L       + L
Sbjct: 562 RAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVL 621

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           ++  Y+  GRW+    ++ + R +G  K  GCSW+ I   I+ F  G   H     I   
Sbjct: 622 MSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKK 681

Query: 615 LRLLTWEMEDEG 626
           L+ L  +M+  G
Sbjct: 682 LQELLVQMKKLG 693



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 227/452 (50%), Gaps = 18/452 (3%)

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           R  +  + +  A  VFD+IP+P VV WN MI  YA  G    ++ ++  M   GV P+ F
Sbjct: 49  RYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNF 108

Query: 149 TFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-- 203
           TF  LL   SS      G+ IH      GLS+ ++ +  +L+ MY K G LY A  +F  
Sbjct: 109 TFPFLLKACSSLQALQLGRLIHTHAHILGLSM-DLYVSTALLHMYAKCGHLYQAQTLFNS 167

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
           ++ ++ DI++WN++I+           +     M+ +G +P+  T+  ++    +   L 
Sbjct: 168 ISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALH 227

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           +GK + A  ++  F  N ++ +A +D+++KC+ L  + ++F  +++ +    + MI  Y 
Sbjct: 228 QGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYV 287

Query: 324 RYGFGEVALELFQLML-REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            +     AL L+  ML    + PT  TL+ +L +   +  ++ G + H   IKSG D + 
Sbjct: 288 LHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDT 347

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V +SL+ MYAK G +D++     ++  +D VS++ I+ G  QNG A + L +F ++   
Sbjct: 348 TVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSS 407

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG--EEHYAC--IIDLLCQAG 497
           G+ P   T+ A+L AC++   +  G          Y V+ G   +   C  IID+  + G
Sbjct: 408 GIAPYLETMIALLPACSHLAALQHGTCCHG-----YTVVRGFTNDTSICNAIIDMYSKCG 462

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ++  + +I   M  +   S W +++    I+G
Sbjct: 463 KITISREIFDRMQNRDIIS-WNTMIIGYGIHG 493


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 259/450 (57%), Gaps = 3/450 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +H  +++S +   ++V+GN+L++MY K G L  A  VF  M + D ++W +LISG  
Sbjct: 79  GRIVHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYS 137

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
                  AL  F  M   GYSP+E+T+S VI A    R    G Q+    VK GF SN  
Sbjct: 138 QHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 197

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V SA +DL+++   ++D+  +F+ L+  +    N +I+ + R    E ALELFQ MLR+ 
Sbjct: 198 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDG 257

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            RP+ F+ + +  +      +E G   H+  IKSG    A   ++L++MYAK+GSI  + 
Sbjct: 258 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 317

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           +IF +L KRD+VSWN+++    Q+G   E +  FEE+   G+ P+ I+  +VL AC++ G
Sbjct: 318 KIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSG 377

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   +  MK++ G++P   HY  ++DLL +AG L +A+     MP +P  +IW+++
Sbjct: 378 LLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKAL 436

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ + +L    AE + +L    P P+ +L   YA  GRW    RV+K M+++G+ 
Sbjct: 437 LNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVK 496

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           K   CSW+ I+N I+ F A + +H   ++I
Sbjct: 497 KEPACSWVEIENAIHMFVANDERHPQREEI 526



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 195/392 (49%), Gaps = 36/392 (9%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A   + + L+ +C  FK     + +H H+ +  F     +GN  L++Y++ G+       
Sbjct: 58  ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS------- 110

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
                                   L+ A KVF+++P+ D V+W ++ISGY+       AL
Sbjct: 111 ------------------------LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDAL 146

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
             F++M   G  P+ FT S ++   ++    C G Q+HG  ++ G   SNV +G++L+D+
Sbjct: 147 LFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD-SNVHVGSALLDL 205

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y + G++  A  VF  +E  + +SWN+LI+G       E AL+ F  M   G+ P  ++ 
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + +  AC+    L++GK V A  +K G    +   +  +D+++K   + D+ ++F++L +
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
            D    N +++ Y ++GFG+ A+  F+ M R  IRP E +   VL++      ++ G  +
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           + +  K G    A    +++++  + G ++ +
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 176/349 (50%), Gaps = 19/349 (5%)

Query: 242 YSP-DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           Y P D    + ++  CT  + L +G+ V A  ++  F  + ++ +  +++++KC  LE++
Sbjct: 55  YIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEA 114

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            ++FE++ + D+     +IS Y ++     AL  F  MLR    P EFTLS V+ +    
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA---A 171

Query: 361 PVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             E     G Q H   +K GFDSN  V S+L+++Y + G +D +  +F  L+ R+ VSWN
Sbjct: 172 AAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWN 231

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  +     + L++F+ +L +G  P   + A++  AC+  GF+++G  V +     
Sbjct: 232 ALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHA----- 286

Query: 477 YGVMPGEEHYA----CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           Y +  GE+  A     ++D+  ++G +  A  I   +  +   S W S+L A A +G  K
Sbjct: 287 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQHGFGK 345

Query: 533 LTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
                 E M  + + P+ + +  +  A +  G  +      ++M+K+GI
Sbjct: 346 EAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGI 394


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 306/605 (50%), Gaps = 45/605 (7%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + + IHG + K+GF++   + N  L +Y+  G S +                        
Sbjct: 369 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA----------------------- 405

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
              NL     VF ++P  D++SWNS+++ + + G S  AL +   M   G   +  TF+ 
Sbjct: 406 ---NL-----VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTS 457

Query: 153 LLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            L+    AC        G+ +HG ++ SGL   N ++GN+L+ MYGK+G +  +  V L 
Sbjct: 458 ALA----ACFTPDFFEKGRILHGLVVVSGL-FYNQIIGNALVSMYGKIGEMSESRRVLLQ 512

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL-DK 264
           M   D+++WN+LI G       + AL  F +MR  G S +  T+  V++AC    +L ++
Sbjct: 513 MPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLER 572

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK + A  V  GF S+  V ++ I +++KC  L  S  LF  LD  +    N M++    
Sbjct: 573 GKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAH 632

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
           +G GE  L+L   M    +   +F+ S  LS+   +  +E G Q H +A+K GF+ ++ +
Sbjct: 633 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 692

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++  +MY+K G I    ++      R L SWN ++  L ++G   E    F E+LE G+
Sbjct: 693 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 752

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P  +T  ++L AC++GG VDKG+  +  +  ++G+ P  EH  C+IDLL ++G+L +A 
Sbjct: 753 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 812

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
              S MP +P   +W S+L +  I+G++      AE +  L+      Y L +  +A  G
Sbjct: 813 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 872

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RWE +  V+K M    I K   CSW+ +K+++ +F  G+  H    +IY  L  +   ++
Sbjct: 873 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 932

Query: 624 DEGCV 628
           + G V
Sbjct: 933 ESGYV 937



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 238/523 (45%), Gaps = 60/523 (11%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG------ 90
           +HG + K G  +  Y+    L LY  +G      ++F+E+P +N +SW   + G      
Sbjct: 196 VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 255

Query: 91  --------------------LLKSD-------------------NLDTALKVFDEIPEPD 111
                               ++KS                    N+D A  +FD++ E D
Sbjct: 256 PEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERD 315

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHG 168
            +SWNS+ + YA  G+ + +  +FS M+      +  T S LLS +    H   G+ IHG
Sbjct: 316 TISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHG 375

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            +++ G   S V + N+L+ MY   G    A  VF  M   D+ISWNSL++   N G   
Sbjct: 376 LVVKMGFD-SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSL 434

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            AL    SM  SG S +  T +  + AC      +KG+ +  L V  G   N I+ +A +
Sbjct: 435 DALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALV 494

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
            ++ K   + +S R+  Q+ R D    N +I  Y      + AL  FQ M  E +     
Sbjct: 495 SMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYI 554

Query: 349 TLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
           T+  VLS+  +P   +E G   H+  + +GF+S+  V +SL+ MYAK G + SS ++F  
Sbjct: 555 TVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNG 614

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           LD R++++WN ++     +G   E L +  ++   G+  D+ + +  L A      +++G
Sbjct: 615 LDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEG 674

Query: 467 MLVFSAMKEEYGVMPGEEHYACII----DLLCQAGQLGKAIDI 505
             +         V  G EH + I     D+  + G++G+ + +
Sbjct: 675 QQLHG-----LAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 712



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 190/406 (46%), Gaps = 50/406 (12%)

Query: 86  ICLRGLLKSDNLDT---------------ALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           +C++GL++   L T               A  +FD +P  + VSWN+M+SG    G    
Sbjct: 97  LCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLE 156

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC----HGKQIHGSMIRSGLSLSNVVLGNSL 186
            +E F KM   G++PS F  + L++    +      G Q+HG + +SGL LS+V +  ++
Sbjct: 157 GMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL-LSDVYVSTAI 215

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + +YG  G++  +  VF  M + +++SW SL+ G  + G  E  +D +            
Sbjct: 216 LHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY------------ 263

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
                        ++   G+Q+    VK G  S   V ++ I +      ++ +  +F+Q
Sbjct: 264 -------------KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQ 310

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-- 364
           +   D    N + + Y + G  E +  +F LM R        T+S +LS   +  V+H  
Sbjct: 311 MSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSV--LGHVDHQK 368

Query: 365 -GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G   H + +K GFDS   V ++L+ MYA  G    +  +F ++  +DL+SWN++M    
Sbjct: 369 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFV 428

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
            +GR+ + L +   ++  G   + +T  + L AC    F +KG ++
Sbjct: 429 NDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRIL 474



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 207/430 (48%), Gaps = 27/430 (6%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVF+E+P+ +VVSW S++ GY+  G  +  ++++    L                     
Sbjct: 230 KVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL--------------------- 268

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G+QI G +++SGL  S + + NSLI M G +G + YA  +F  M E D ISWNS+ +  
Sbjct: 269 -GRQIIGQVVKSGLE-SKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 326

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G+ E +   F  MR      +  T+S +++    + +   G+ +  L VK+GF S  
Sbjct: 327 AQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVV 386

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +  + +++   R  ++  +F+Q+   D    N +++++   G    AL L   M+  
Sbjct: 387 CVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 446

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
                  T +  L++   P   E G   H + + SG   N ++ ++L+ MY K G +  S
Sbjct: 447 GKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSES 506

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY- 459
             + +++ +RD+V+WN ++ G  ++    + L  F+ +  EG+  + IT+ +VL AC   
Sbjct: 507 RRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLP 566

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
           G  +++G  + + +    G    E     +I +  + G L  + D+ + +        W 
Sbjct: 567 GDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWN 624

Query: 520 SILRASAIYG 529
           ++L A+A +G
Sbjct: 625 AMLAANAHHG 634



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 199/430 (46%), Gaps = 55/430 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +   F+  + +HG +   G   +  +GN  + +Y + G   +  ++  ++P+++ ++W
Sbjct: 462 CFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAW 521

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               ++I GYA     D AL  F  M+++GV 
Sbjct: 522 N-------------------------------ALIGGYAEDEDPDKALAAFQTMRVEGVS 550

Query: 145 PSGFTFSILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +  T    + +V SAC         GK +H  ++ +G   S+  + NSLI MY K G L
Sbjct: 551 SNYIT----VVSVLSACLLPGDLLERGKPLHAYIVSAGFE-SDEHVKNSLITMYAKCGDL 605

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  ++  +II+WN++++   + G+GE  L     MR  G S D+++ S  ++A 
Sbjct: 606 SSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAA 665

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            KL  L++G+Q+  L+VK+GF  +S + +A  D++SKC  + + V++            N
Sbjct: 666 AKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWN 725

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
           ++IS  GR+G+ E     F  ML   I+P   T   +L++      V+ G  ++ M  + 
Sbjct: 726 ILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARD 785

Query: 376 -GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNTIMMGLTQNG------ 426
            G +        ++++  ++G +  +     K+  +  DLV W +++     +G      
Sbjct: 786 FGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGR 844

Query: 427 RAAETLDVFE 436
           +AAE L   E
Sbjct: 845 KAAENLSKLE 854



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 168/400 (42%), Gaps = 66/400 (16%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP----QKNCISWNICLRGLLKSDN 96
           ++K+GF +  + G        R G      QL  + P    ++   +  ICL  +  + N
Sbjct: 1   MWKVGFKSLIFPGTTVEHRRIRAG------QLATQSPVFSGRRFSFAQWICLPPVQDATN 54

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           LD A+  F++        WN  IS +   G+S   +E                       
Sbjct: 55  LDIAM--FEKSGRKKN-HWNPEISCFDQIGFSQITIE----------------------- 88

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G+ +H   ++ GL   +V+  N+LI+MY K G +  A  +F  M   + +SWN+
Sbjct: 89  ----TTGRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNT 143

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL-DKGKQVFALSVKV 275
           ++SG    G     ++ F  M   G  P  + I+ ++ AC +  ++  +G QV     K 
Sbjct: 144 MMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKS 203

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G LS+  V +A + L+     +  S ++FE++   +      ++  Y   G  E  ++++
Sbjct: 204 GLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY 263

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           +    E +                     G Q     +KSG +S   V +SL+ M    G
Sbjct: 264 K---DESL---------------------GRQIIGQVVKSGLESKLAVENSLISMLGSMG 299

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           ++D +  IF ++ +RD +SWN+I     QNG   E+  +F
Sbjct: 300 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF 339



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 121/258 (46%), Gaps = 19/258 (7%)

Query: 265 GKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           G+ V AL VK G +  S++ + T I++++K  R++ +  LF+ +   +    N M+S   
Sbjct: 91  GRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNA 381
           R G     +E F+ M    I+P+ F ++ ++++          G Q H    KSG  S+ 
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 209

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE----- 436
            V+++++ +Y   G +  S ++F ++  R++VSW ++M+G +  G   E +D+++     
Sbjct: 210 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLG 269

Query: 437 -----ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
                ++++ GL        +++      G VD    +F  M E   +      +  I  
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI-----SWNSIAA 324

Query: 492 LLCQAGQLGKAIDITSTM 509
              Q G + ++  I S M
Sbjct: 325 AYAQNGHIEESFRIFSLM 342


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 309/601 (51%), Gaps = 42/601 (6%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +H H+ KLG      L N+ L +Y                               +K
Sbjct: 92  GKQLHAHVIKLGXCNLLSLQNQVLHVY-------------------------------VK 120

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL-----EMFSKMQLQGVRPSGF 148
               +   K+FDE+P  +VVSWN++I G    G   +AL       F +M L+ + P+  
Sbjct: 121 CKEFNDVCKMFDEMPLKNVVSWNTLICGVVE-GNCKFALVRLGFHCFRQMVLEMMAPNCI 179

Query: 149 TFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           T + LL     ++     +Q+H  +++SG   SN  +G++L+D Y K G++  A   F  
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFD-SNCFVGSALVDSYAKFGLVDEAQSAFDE 238

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           +   D++ WN ++S    +G    A   F  MR  G   D +T + +IN+C  L +   G
Sbjct: 239 VSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLG 298

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           KQV  L +++ F  + +V SA +D++SK   +ED+ + F+ +   +      M   YG++
Sbjct: 299 KQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQH 358

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G G+  + L Q M+R    P E  L+ +LSS   +       Q H+  +++GF++   +A
Sbjct: 359 GDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIA 418

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+  Y+K GSI S+ + F  + + D++SW ++M     +G + + +DVFE++L   + 
Sbjct: 419 NALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVR 478

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD++    VL AC +GGFV +G+  F+ M   Y +MP  EHY  IIDLL +AG L +A++
Sbjct: 479 PDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVN 538

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           + ++MP +P      + L A  +Y +V L    +E++  ++   P  YSL++  YA  G 
Sbjct: 539 LLTSMPVEPRSDTLGAFLGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGH 598

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           W  + RV+K+MR+    KV GCSW+     ++TF + +  H    ++Y +L LL   M++
Sbjct: 599 WFDVARVRKLMRERCDFKVPGCSWMETAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMKE 658

Query: 625 E 625
           E
Sbjct: 659 E 659



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 7/211 (3%)

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-----RWD 311
            KL  L  GKQ+ A  +K+G  +   + +  + ++ KC    D  ++F+++       W+
Sbjct: 84  AKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWN 143

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHS 370
             +  V +    ++    +    F+ M+ E + P   TL+ +L +SI +  V    Q H 
Sbjct: 144 TLICGV-VEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHC 202

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +KSGFDSN  V S+L++ YAK G +D +   F ++  RDLV WN ++     NG   +
Sbjct: 203 FILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGK 262

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
              VF+ +  EG+  D  T  +++ +C   G
Sbjct: 263 AFGVFKLMRLEGVKGDXFTFTSMINSCGVLG 293



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I+ C    S    K +HG + +L F+    + +  +D+YS+    +D  + FD +  
Sbjct: 283 TSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJV 342

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                               +VSW +M  GY   G     + +  +M
Sbjct: 343 KN-------------------------------IVSWTTMXVGYGQHGDGKEXMRLLQEM 371

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                 P     + +LS+   +S+     Q+H  ++ +G   + + + N+L+  Y K G 
Sbjct: 372 IRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFE-AFLSIANALVSAYSKCGS 430

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  AF  F ++ E DIISW SL+      G  +  +D F  +  S   PD+     V++A
Sbjct: 431 IGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSA 490

Query: 256 CTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C     + +G   F L + V   + +S   ++ IDL  +   L+++V L   +
Sbjct: 491 CAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSM 543


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/602 (29%), Positives = 304/602 (50%), Gaps = 31/602 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +     K +HG   KL  +    + N  +D+YS++G   D   +F     KN +SW
Sbjct: 286 CAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSW 345

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G     ++     +  +           M++G       +  +       L  V 
Sbjct: 346 NTMVGGFSAEGDIHGTFDLLRQ-----------MLAGSEDVKADEVTI-------LNAV- 386

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           P  F  S+L S        K++H   ++    + + +L N+ +  Y K G L YA  VF 
Sbjct: 387 PVCFDESVLPSL-------KELHCYSLKQEF-VYDELLANAFVASYAKCGSLSYAQRVFH 438

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            +    + SWN+LI G   S    L+LD    M+ SG  PD +T+  +++AC+KL++L  
Sbjct: 439 GIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRL 498

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK+V    ++     +  V  + + L+  C  L     LF+ ++       N +I+ + +
Sbjct: 499 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQ 558

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVV 383
            GF E AL LF+ M+   I+P   ++  V  +  + P +  G + H+ A+K   + NA +
Sbjct: 559 NGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFI 618

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           A S+++MYAK G+I  S+++F  L ++   SWN ++MG   +GRA E + +FEE+   G 
Sbjct: 619 ACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGR 678

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +T   VL ACN+ G + +G+     MK  +G+ P  +HYAC+ID+L +AGQL  A+
Sbjct: 679 NPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNAL 738

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            + + M  +P   IW S+L    I+ ++++ E VA ++  L+   P  Y LL+  YA  G
Sbjct: 739 RVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLG 798

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI---YLVLRLLTW 620
           +W+ + +V++ M++  + K  GCSWI +  ++++F  GE    G ++I   + +L +  W
Sbjct: 799 KWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIW 858

Query: 621 EM 622
           +M
Sbjct: 859 KM 860



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 198/445 (44%), Gaps = 66/445 (14%)

Query: 29  KSFDFAKTIHGHLFK--LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           K  +  + IH HL        +   L  R + +Y+  G+ DD    FD +  KN      
Sbjct: 98  KDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQ--- 153

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRP 145
                                       WN++IS Y+        LEMF KM     + P
Sbjct: 154 ----------------------------WNAVISSYSRNELYHEVLEMFIKMISKTHLLP 185

Query: 146 SGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
             FTF  ++     +S    G  +HG ++++GL + ++ +GN+L+  YG  G +  A  +
Sbjct: 186 DNFTFPCVIKACAGISDVGIGLAVHGLVVKTGL-VEDLFVGNALVSFYGTHGFVSDALKL 244

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M E +++SWNS+I    ++G                + PD  T+  V+  C + R +
Sbjct: 245 FDIMPERNLVSWNSMIRVFSDNGDD------------GAFMPDVATVVTVLPVCAREREI 292

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             GK V   +VK+      +V +A +D++SK   + DS  +F+  +  +    N M+  +
Sbjct: 293 GVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGF 352

Query: 323 GRYGFGEVALELFQLML--REDIRPTEFTLSCVLSSIPI-------PPVEHGSQFHSMAI 373
              G      +L + ML   ED++  E T   +L+++P+       P ++   + H  ++
Sbjct: 353 SAEGDIHGTFDLLRQMLAGSEDVKADEVT---ILNAVPVCFDESVLPSLK---ELHCYSL 406

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K  F  + ++A++ +  YAK GS+  +  +F  +  + L SWN ++ G  Q+     +LD
Sbjct: 407 KQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLD 466

Query: 434 VFEELLEEGLPPDRITLAAVLLACN 458
              ++   GL PD  T+ ++L AC+
Sbjct: 467 AHLQMKNSGLLPDNFTVCSLLSACS 491



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 227/526 (43%), Gaps = 50/526 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C           +HG + K G     ++GN  +  Y   G   D L+LFD +P++N
Sbjct: 193 VIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERN 252

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SWN  +R  + SDN D      D    PDV +  ++             L + ++ + 
Sbjct: 253 LVSWNSMIR--VFSDNGD------DGAFMPDVATVVTV-------------LPVCARERE 291

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            GV                   GK +HG  ++  L    +V+ N+L+DMY K G +  + 
Sbjct: 292 IGV-------------------GKGVHGWAVKLSLD-KELVVNNALMDMYSKWGCIIDSQ 331

Query: 201 GVFLNMEELDIISWNSLISGCFNSG--YGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            +F      +++SWN+++ G    G  +G   L +           DE TI   +  C  
Sbjct: 332 MIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFD 391

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
              L   K++   S+K  F+ + ++ +A +  ++KC  L  + R+F  +        N +
Sbjct: 392 ESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNAL 451

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGF 377
           I  Y +     ++L+    M    + P  FT+  +LS+   +  +  G + H   I++  
Sbjct: 452 IGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 511

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           + +  V  S++ +Y   G + +   +F  ++   LVSWNT++ G  QNG     L +F +
Sbjct: 512 ERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQ 571

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYAC-IIDLLCQ 495
           ++  G+ P  I++  V  AC+    +  G    + A+K    ++      AC IID+  +
Sbjct: 572 MVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKH---LLEDNAFIACSIIDMYAK 628

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            G + ++  + + +  +   S W +++    ++G  K    + E M
Sbjct: 629 NGAITQSSKVFNGLKEKSAAS-WNAMIMGYGMHGRAKEAIKLFEEM 673


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/566 (31%), Positives = 286/566 (50%), Gaps = 35/566 (6%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S +  DF + +H  + K GF     + N  L +Y   G   D  ++F+E           
Sbjct: 196 SLELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEA---------- 245

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                              E    D +++N MI G AS G  + AL MF +MQ   +RP+
Sbjct: 246 -------------------ESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPT 286

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
             TF  ++S+ SSA    Q+H   I+ G      V  N+ + MY   G L+    VF  +
Sbjct: 287 ELTFVSVMSSCSSARVSHQVHAQAIKMGFEACTPV-SNAAMTMYSSCGNLHAVHMVFDRL 345

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           EE D+ISWN +I       +  LA+  F  M+ +G  PDE+TI  ++ +     +L+  K
Sbjct: 346 EEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASS---ESLEIVK 402

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
              AL  K G  S   V +A +  FSK  ++E + ++F  +   +    N +IS +   G
Sbjct: 403 MFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNG 462

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
           F    LE F  +L   ++P  +TLS VLS    I  + HG Q H   ++SG  S   + +
Sbjct: 463 FTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGN 522

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LP 444
           +L+ MYAK G +D S  IF  ++ RD+VSWN ++    Q+G+  E +  F+ + + G + 
Sbjct: 523 ALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVK 582

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD+ T  AVL AC++ G VD G  +F++M  +YG  PG +H +CI+DLL +AG L +A  
Sbjct: 583 PDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAER 642

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           + ++   +   SIW ++  A A +G+++L   VA  +++++   P  Y LL+  YA  G+
Sbjct: 643 LINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQ 702

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIG 590
           WE     + +M+K  + K  GCSWIG
Sbjct: 703 WEEAANTRDLMQKTRVAKQPGCSWIG 728



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/546 (27%), Positives = 265/546 (48%), Gaps = 18/546 (3%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S+YLK  H         S  +  C + +       +H +  + G  A+T++GN  L  Y+
Sbjct: 46  SNYLKPDHFT------LSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYA 99

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
           +      V ++F+EI   +  SW   L    K   +  A  +F++ P    V WN++I+G
Sbjct: 100 KSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITG 159

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC--HGKQIHGSMIRSGLSLSN 179
            A   +++ AL +F +M   GVR   +TF+ +LS  S      G+++H  +I++G  +  
Sbjct: 160 CAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCSLELLDFGREVHTLVIKTGFLVRA 219

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEEL--DIISWNSLISGCFNSGYGELALDQFYSM 237
            V+ N+L+ MY   G +  A+ VF   E    D I++N +I G  + G  E AL  F  M
Sbjct: 220 SVI-NALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEM 278

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           + +   P E T   V+++C+  R      QV A ++K+GF + + V +A + ++S C  L
Sbjct: 279 QEACLRPTELTFVSVMSSCSSAR---VSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNL 335

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
                +F++L+  D    N++I  Y +  F  +A+  F  M R  I P EFT+  +L+S 
Sbjct: 336 HAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLAS- 394

Query: 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               +E    F ++  K+G +S   V+++L+  ++K G I+ + ++F  +   +L+SWNT
Sbjct: 395 -SESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNT 453

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           I+ G   NG   + L+ F ELL   L P+  TL+ VL  C     +  G  +   +    
Sbjct: 454 IISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRS- 512

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           GV         +I +  + G L  ++ I + M  +   S W +++ A A +G  K   + 
Sbjct: 513 GVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVS-WNAMISAYAQHGKGKEAVHF 571

Query: 538 AERMMD 543
            + M D
Sbjct: 572 FKAMQD 577


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 289/546 (52%), Gaps = 8/546 (1%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           +   L   +++ A K F E+ EPD++ WN++I GY      D  + M+  MQ+  V P+ 
Sbjct: 41  INACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNC 100

Query: 148 FTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTF  +L      S    GKQIHG   + G   SNV + NSL+ MY K G + YA  VF 
Sbjct: 101 FTFLYVLKACGGTSVEGIGKQIHGQTFKYGFG-SNVFVQNSLVSMYAKFGQISYARIVFD 159

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            + +  ++SW S+ISG   +G    AL+ F  MR     PD   +  V+ A T + +L +
Sbjct: 160 KLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 219

Query: 265 GKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           GK +  L  K+G      IV+S T  +++K   +E +   F ++++ +  + N MIS Y 
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTT-MYAKRGLVEVARFFFNRMEKPNLILWNAMISGYA 278

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
             G+GE A++LF+ M+ ++IR    T+ S VL+S  +  +E          KS +  +  
Sbjct: 279 NNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTF 338

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V + L++MYAK GSI  +  +F ++  +D+V W+ ++MG   +G   E + ++ E+ + G
Sbjct: 339 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 398

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + P+  T   +L AC   G V +G  +F  M  ++G+ P  +HY+C++DLL +AG L +A
Sbjct: 399 VCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQA 457

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            D   +MP +PG S+W ++L A  I+  V+L E  AE++  L   +   Y  L+  YA  
Sbjct: 458 YDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASA 517

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
             W  +  V+ +M + G+NK  G S I I   + TF  G+  H   ++I+  L  L   +
Sbjct: 518 HLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRL 577

Query: 623 EDEGCV 628
           +  G V
Sbjct: 578 KAAGYV 583



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 184/393 (46%), Gaps = 41/393 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHG  FK GF ++ ++ N  + +Y++FG       +FD++  +  +SW   + G ++
Sbjct: 119 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 178

Query: 94  SDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           + +   AL VF E+ +    PD ++  S+++ Y                           
Sbjct: 179 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAY--------------------------- 211

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
                + V     GK IHG + + GL    ++V+  SL  MY K G++  A   F  ME+
Sbjct: 212 -----TNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFNRMEK 264

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            ++I WN++ISG  N+GYGE A+  F  M       D  T+   + A  ++ +L+  + +
Sbjct: 265 PNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWL 324

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
                K  +  ++ V +  ID+++KC  +  +  +F+++   D  + +VMI  YG +G G
Sbjct: 325 DGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHG 384

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSL 387
           + A+ L+  M +  + P + T   +L++      V+ G +   +    G + +    S +
Sbjct: 385 QEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCV 444

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
           +++  + G ++ + +  + +  +  VS W  ++
Sbjct: 445 VDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALL 477


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 290/543 (53%), Gaps = 5/543 (0%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
            LL  D +D AL +F+ I +P+  ++N MI G A     D AL +F KM  + V+   FT
Sbjct: 64  ALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFT 123

Query: 150 FSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +L   S + +   G+Q+H  +++SG   SN  + N+LI MY   G +  A  VF  M
Sbjct: 124 FSSVLKACSRMKALREGEQVHALILKSGFK-SNEFVENTLIQMYANCGQIGVARHVFDGM 182

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            E  I++WNS++SG   +G  +  +  F  +       D+ T+  V+ AC +L NL+ G+
Sbjct: 183 PERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGE 242

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +    V  G   N+ + ++ ID+++KC +++ + +LF+++D+ D    + MIS Y +  
Sbjct: 243 LIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQAD 302

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             + AL LF  M + ++ P E T+  VL S   +   E G   H    K        + +
Sbjct: 303 RCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGT 362

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            L++ YAK G ID S E+F ++  +++ +W  ++ GL  NG     L+ F  +LE  + P
Sbjct: 363 QLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKP 422

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + +T   VL AC++   VD+G  +F++M+ ++ + P  EHY C++D+L +AG L +A   
Sbjct: 423 NDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQF 482

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MPF P   +W ++L +   + ++++ E   E +  L+      Y LL+  YA+ GR 
Sbjct: 483 IDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRV 542

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           E  +RV+ ++++  I K+ GCS I +   ++ F + + +H   ++I+  L  +  +++  
Sbjct: 543 EDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRL 602

Query: 626 GCV 628
           G V
Sbjct: 603 GYV 605



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 223/476 (46%), Gaps = 50/476 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K+    + +H  + K GF ++ ++ N  + +Y+  G       +FD +P+
Sbjct: 125 SSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPE 184

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN-SMISGYASCGYSDYALEMFSK 137
           ++ ++WN  L G  K+   D  +K+F +I E  +   + +MIS   +CG         + 
Sbjct: 185 RSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACG-------RLAN 237

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +++                      G+ I   ++  GL  +N  L  SLIDMY K G + 
Sbjct: 238 LEI----------------------GELIGEYIVSKGLRRNN-TLTTSLIDMYAKCGQVD 274

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M++ D+++W+++ISG   +   + AL+ F+ M+     P+E T+  V+ +C 
Sbjct: 275 TARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCA 334

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            L   + GK V    +K   +  ++ L +  ID ++KC  ++ SV +F+++   +     
Sbjct: 335 MLGAYETGKWVH-FYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWT 393

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIK 374
            +I      G G++ALE F  ML  D++P + T   VLS+      V+ G   F+SM  +
Sbjct: 394 ALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSM--R 451

Query: 375 SGFDSNAVVAS--SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAET 431
             FD    +     ++++  + G ++ + +    +    + V W T++       RA + 
Sbjct: 452 RDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASC----RAHKN 507

Query: 432 LDVFEELLEE--GLPPDRITLAAVLLACNYG--GFVDKGMLVFSAMKE-EYGVMPG 482
           +++ E+ LE    L P   +   +LL+  Y   G V+  + V S +KE E   +PG
Sbjct: 508 IEMAEKSLEHITRLEPAH-SGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPG 562


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 308/609 (50%), Gaps = 77/609 (12%)

Query: 97  LDTALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSIL 153
           L  A   FD +P    D V  N+M+S +A    +  A+ +F  +   G +RP  ++F+ L
Sbjct: 108 LRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTAL 167

Query: 154 LSTVS-----SACHGKQIHGSMIRSG----LSLSNVVLG--------------------- 183
           +S V      +A H  Q+H S+++SG    LS+SN ++                      
Sbjct: 168 ISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEM 227

Query: 184 --------NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
                    +++  Y + G +  A  VF  ++    + WN++ISG   SG    A + F 
Sbjct: 228 PDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFR 287

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA--LSVKVGFLSNSI--VLSATIDLF 291
            M       DE+T + V++AC        GK V    + ++  F+  +   V +A + L+
Sbjct: 288 RMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLY 347

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVIN-------------------------------VMIS 320
           SK  ++  + R+F+ ++  D    N                               VM+S
Sbjct: 348 SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVS 407

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDS 379
            Y   G  E AL+LF  M  ED++P ++T +  +++   +  ++HG Q H+  ++ GF++
Sbjct: 408 GYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEA 467

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           +    ++L+ MYAK G+++ +  +F+ +   D VSWN ++  L Q+G   E L++F++++
Sbjct: 468 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 527

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
            EG+ PDRI+   +L ACN+ G VD+G   F +MK ++G+ PGE+HYA +IDLL ++G++
Sbjct: 528 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 587

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
           G+A D+  TMPF+P  SIWE+IL      GD++     A+++  +       Y LL+  Y
Sbjct: 588 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTY 647

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           +  GRW    RV+K+MR  G+ K  GCSWI + ++I+ F  G+ +H   Q++Y  L ++ 
Sbjct: 648 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIG 707

Query: 620 WEMEDEGCV 628
             M   G V
Sbjct: 708 ARMRKLGYV 716



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 203/433 (46%), Gaps = 43/433 (9%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD---DVLQLFDEIPQKNCISWNICLRGLLK 93
           +H  + K G  A   + N  + LY +  T +   D  ++ DE+P K+ ++W   + G ++
Sbjct: 185 LHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVR 244

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
             +++ A  VF+E+     V WN+MISGY   G    A E+F +M  + V    FTF+ +
Sbjct: 245 RGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSV 304

Query: 154 LSTVSSA---CHGKQIHGSMIR---SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           LS  ++A    HGK +HG +IR   + +  + + + N+L+ +Y K G +  A  +F  M 
Sbjct: 305 LSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 364

Query: 208 ELDIISWNSLISGCFNS-------------------------------GYGELALDQFYS 236
             D++SWN+++SG  +S                               G  E AL  F  
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 424

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           MR     P +YT +  I AC +L  L  G+Q+ A  V+ GF +++   +A + +++KC  
Sbjct: 425 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 484

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           + D+  +F  +   D    N MIS  G++G G  ALELF  M+ E I P   +   +L++
Sbjct: 485 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 544

Query: 357 IPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
                 V+ G   F SM    G        + L+++  ++G I  + ++   +      S
Sbjct: 545 CNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 604

Query: 415 -WNTIMMGLTQNG 426
            W  I+ G   NG
Sbjct: 605 IWEAILSGCRTNG 617



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 169/337 (50%), Gaps = 14/337 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN----AHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           + ++  C +   F   K++HG + +L  N    A   + N  + LYS+ G      ++FD
Sbjct: 302 TSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFD 361

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +  K+ +SWN  L G + S  LD A++VF  +P  + +SW  M+SGY   G S+ AL++
Sbjct: 362 TMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKL 421

Query: 135 FSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F++M+ + V+P  +T++  ++    + +  HG+Q+H  +++ G   SN   GN+L+ MY 
Sbjct: 422 FNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSA-GNALLTMYA 480

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  VFL M  LD +SWN++IS     G+G  AL+ F  M   G  PD  +   
Sbjct: 481 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 540

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           ++ AC     +D+G   F ++    G        +  IDL  +  R+ ++  L + +   
Sbjct: 541 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 600

Query: 311 DYAVINVMI----STYGRYGFGEVAL-ELFQLMLRED 342
               I   I     T G   FG  A  +LF+++ + D
Sbjct: 601 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 637



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 137/333 (41%), Gaps = 47/333 (14%)

Query: 292 SKCNRLEDSVRLFEQLD--RWDYAVINVMISTYGRYGFGEVALELFQLMLRE-DIRPTEF 348
           +   RL D+   F+ +   R D  + N M+S + R      A+ +F  +L    +RP ++
Sbjct: 103 AAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDY 162

Query: 349 TLSCVLSSIPIP---PVEHGSQFHSMAIKSGFD-----SNAVVA---------------- 384
           + + ++S++         H +Q H   +KSG       SNA++A                
Sbjct: 163 SFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARK 222

Query: 385 -------------SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
                        ++++  Y + G ++++  +F ++D +  V WN ++ G  Q+G  A+ 
Sbjct: 223 VLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADA 282

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYA--C 488
            ++F  ++ E +P D  T  +VL AC   GF   G  V    ++ +   +P         
Sbjct: 283 FELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNA 342

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           ++ L  + G++  A  I  TM  +   S W +IL     Y D    +   E    +   +
Sbjct: 343 LVTLYSKGGKIVIAKRIFDTMNLKDVVS-WNTILSG---YIDSGCLDKAVEVFKVMPYKN 398

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
            L + ++   Y   G  E  +++   MR   + 
Sbjct: 399 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 431


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/571 (30%), Positives = 300/571 (52%), Gaps = 38/571 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ I EP+++ WN+M  G+A       AL+++  M   G+ P+ +TF  LL
Sbjct: 82  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLS------------------------------NVV 181
            + + +     G+QIHG +++ G  L                               +VV
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
              +LI  Y   G +  A  +F  +   D++SWN++ISG   +G  + AL+ F  M  + 
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE T+  V++AC +  +++ G+QV +     GF SN  ++++ +DL+SKC  LE + 
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LFE L   D    N +I  Y      + AL LFQ MLR   RP + T+  +L +   + 
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381

Query: 361 PVEHGSQFH---SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            ++ G   H      +KS  ++++ + +SL++MYAK G I+++ ++F  +  + L SWN 
Sbjct: 382 AIDIGRWIHVYIDKRLKSATNASS-LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +GRA    D+F  + + G+ PD IT   +L AC+  G +D G  +F  M ++Y
Sbjct: 441 MIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDY 500

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL  +G   +A ++ + M  +P   IW S+L+A  I G+V+L E+ 
Sbjct: 501 KITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESF 560

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+ ++ ++  +P  Y LL+  YA  GRW  + +++ ++   G+ KV GCS I I + ++ 
Sbjct: 561 AQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHE 620

Query: 598 FNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           F  G+  H   ++IY +L  +   +E  G V
Sbjct: 621 FIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 185/345 (53%), Gaps = 14/345 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHGH+ KLG++   ++    + +Y + G  +D  ++FD  P ++
Sbjct: 140 LLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRD 199

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   ++G      +++A K+FDEIP  DVVSWN+MISGYA  G    ALE+F +M  
Sbjct: 200 VVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMK 259

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             +RP   T    + TV SAC        G+Q+H  +   G   SN+ + NSL+D+Y K 
Sbjct: 260 TNIRPDEST----MVTVVSACAQSGSIELGRQVHSWIDDHGFG-SNLKIVNSLMDLYSKC 314

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG  P++ T+  ++
Sbjct: 315 GELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSIL 374

Query: 254 NACTKLRNLDKGKQVFA-LSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWD 311
            AC  L  +D G+ +   +  ++   +N+  L ++ ID+++KC  +E + ++F  +    
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +  N MI  +  +G  + A ++F  M +  I P + T   +LS+
Sbjct: 435 LSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSA 479



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 195/413 (47%), Gaps = 36/413 (8%)

Query: 164 KQIHGSMIRSGLSLSNVVLGN--SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           + IH  MI++GL  +N  L     L  +      L YA  VF  ++E +++ WN++  G 
Sbjct: 50  RLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 109

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             S     AL  +  M   G  P+ YT   ++ +C K +   +G+Q+    +K+G+  + 
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDL 169

Query: 282 IVLSATIDLFSKCNRLEDSV-------------------------------RLFEQLDRW 310
            V ++ I ++ +  RLED+                                +LF+++   
Sbjct: 170 FVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVK 229

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFH 369
           D    N MIS Y   G  + ALELF+ M++ +IRP E T+  V+S+      +E G Q H
Sbjct: 230 DVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVH 289

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           S     GF SN  + +SLM++Y+K G ++++  +F  L  +D++SWNT++ G T      
Sbjct: 290 SWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYK 349

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYAC 488
           E L +F+E+L  G  P+ +T+ ++L AC + G +D G  +   + K              
Sbjct: 350 EALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTS 409

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +ID+  + G +  A  + +++      S W +++   A++G      ++  RM
Sbjct: 410 LIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAFDIFSRM 461



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ I    + SWN+MI G+A  G +D A ++FS+M+  G+ P   TF  
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVG 475

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  +M +       +     +ID+ G  G+   A  +  NME E
Sbjct: 476 LLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEME 535

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  EL 
Sbjct: 536 PDGVIWCSLLKACKIRGNVELG 557


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 303/605 (50%), Gaps = 40/605 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C    + +  +  H    +LG   +  Y GN  L  Y++ G   D               
Sbjct: 117 CARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVAD--------------- 161

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ--LQ 141
                           A +VFD +P  D+V+WNSM+ GY S G    AL+ F +M   LQ
Sbjct: 162 ----------------AERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQ 205

Query: 142 GVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            V+  G      L+     S+   G+++H  +IR GL   +V +G SL+DMY K G +  
Sbjct: 206 -VQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLE-QDVKVGTSLLDMYCKCGAIAS 263

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A G+F  M    +++WN +I G   +G  E A D F  M+  G+  +  T   ++ AC +
Sbjct: 264 AEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQ 323

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
             +   G+ V     +  FL + ++ +A ++++SK  +++ S  +F Q+        N M
Sbjct: 324 TESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNM 383

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGF 377
           I+ Y        A+ LF  +L + + P  FT+S V+ + + +  +    Q HS  ++  +
Sbjct: 384 IAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDY 443

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
             N +V +++M MYA+ G + SS +IF K+  +D++SWNTI+MG   +G+    L++F E
Sbjct: 444 GENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSE 503

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           +   GL P+  T  +VL AC+  G  D+G + F+ M+ +YG++P  EHY C+ DLL +AG
Sbjct: 504 MKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAG 563

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
            L + +    ++P  P   IW S+L AS    D+ + E  AER+ +L+  +   Y +L+ 
Sbjct: 564 DLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSS 623

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            YA  GRWE + R++  M + G+ +    S + +     +F  G++ H   + I+ V  +
Sbjct: 624 MYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSDV 683

Query: 618 LTWEM 622
           L+ ++
Sbjct: 684 LSRKI 688



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 203/435 (46%), Gaps = 17/435 (3%)

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQI 166
           PD    N +I G+A  G  + AL  +  M   G RP  FTF +++   + + +   G+  
Sbjct: 70  PDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAA 129

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H + IR GL  S V  GNSL+  Y KLG++  A  VF  M   DI++WNS++ G  ++G 
Sbjct: 130 HSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGL 189

Query: 227 GELALDQFYSMRYSGYSPDEYTISIV--INACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G LALD F  M + G       + I+  + AC     L +G++V A  ++ G   +  V 
Sbjct: 190 GALALDCFREM-HEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVG 248

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           ++ +D++ KC  +  +  +F  +        N MI  Y   G  E A + F  M  E  +
Sbjct: 249 TSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQ 308

Query: 345 PTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
               T   +L++        +G   H    +S F  + V+ ++L+EMY+K G + SS  I
Sbjct: 309 VEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETI 368

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++  + LVSWN ++          E + +F ELL + L PD  T++AV+ A     FV
Sbjct: 369 FGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPA-----FV 423

Query: 464 DKGMLVFSAMKEEYGVMP--GEEHYA--CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
             G+L        Y V    GE       ++ +  + G +  +  I   M  +   S W 
Sbjct: 424 LLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVIS-WN 482

Query: 520 SILRASAIYGDVKLT 534
           +I+   AI+G  K+ 
Sbjct: 483 TIIMGYAIHGQGKIA 497



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 129/302 (42%), Gaps = 30/302 (9%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           KA  ++  +     L+  C   +S  + +++HG++ +  F  H  L    L++YS+ G  
Sbjct: 303 KAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKV 362

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
                +F ++  K  +SWN  +   +  +  + A+ +F E+    +              
Sbjct: 363 KSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPL-------------- 408

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
           Y DY         +  V P+     +L          +Q+H  ++R      N ++ N++
Sbjct: 409 YPDY-------FTMSAVVPAFVLLGLLRQC-------RQMHSYIVRLDYG-ENTLVTNAV 453

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + MY + G +  +  +F  M   D+ISWN++I G    G G++AL+ F  M+ +G  P+E
Sbjct: 454 MHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNE 513

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            T   V+ AC+     D+G   F L  +  G +          DL  +   L + ++  E
Sbjct: 514 STFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIE 573

Query: 306 QL 307
            +
Sbjct: 574 SI 575


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/524 (30%), Positives = 290/524 (55%), Gaps = 5/524 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  NL  A K+F+ +P+ D V+WN +I+GY   G++D A  +F+ M   GV+P   TF+ 
Sbjct: 260 KCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFAS 319

Query: 153 LLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L ++    S  H K++H  ++R  +   +V L ++LID+Y K G +  A  +F     +
Sbjct: 320 FLPSILESGSLRHCKEVHSYIVRHRVPF-DVYLKSALIDVYFKGGDVEMARKIFQQNILV 378

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+    ++ISG    G    A++ F  +   G   +  T++ V+ AC  +  L  GK++ 
Sbjct: 379 DVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELH 438

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K    +   V SA  D+++KC RL+ +   F ++   D    N MIS++ + G  E
Sbjct: 439 CHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPE 498

Query: 330 VALELFQLMLREDIR-PTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           +A++LF+ M     +  +    S + ++  +P + +G + H   I++ F S+  VAS+L+
Sbjct: 499 IAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLI 558

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G++  +  +F  +D ++ VSWN+I+     +G   E LD++ E+L  G+ PD +
Sbjct: 559 DMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHV 618

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   ++ AC + G VD+G+  F  M  EYG+    EHYAC++DL  +AG++ +A D   +
Sbjct: 619 TFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKS 678

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF P   +W ++L A  ++G+V+L +  +  +++L   +   Y LL+  +A  G W ++
Sbjct: 679 MPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASV 738

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           ++V+ +M++ G+ K+ G SWI +    + F+A +  H    +IY
Sbjct: 739 LKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPESVEIY 782



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 224/449 (49%), Gaps = 19/449 (4%)

Query: 92  LKSDN--LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           L +DN  +  A +VFDE+P  D + WN M+ GY   G  D A+  F +M+      +  T
Sbjct: 156 LYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVT 215

Query: 150 FSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           ++ +LS   T  + C G Q+HG +I SG      V  N+L+ MY K G L YA  +F  M
Sbjct: 216 YTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQV-ANTLVAMYSKCGNLLYARKLFNTM 274

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D ++WN LI+G   +G+ + A   F +M  +G  PD  T +  + +  +  +L   K
Sbjct: 275 PQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCK 334

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           +V +  V+     +  + SA ID++ K   +E + ++F+Q    D AV   MIS Y  +G
Sbjct: 335 EVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHG 394

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               A+  F+ +++E +     T++ VL +   +  ++ G + H   +K   ++   V S
Sbjct: 395 LNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGS 454

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           ++ +MYAK G +D + E F ++  RD V WN+++   +QNG+    +D+F ++   G   
Sbjct: 455 AITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKF 514

Query: 446 DRITLAAVL-----LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           D ++L++ L     L   Y G    G ++ +A   +  V       + +ID+  + G L 
Sbjct: 515 DSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVA------STLIDMYSKCGNLA 568

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYG 529
            A  + + M  +   S W SI+ A   +G
Sbjct: 569 LAWCVFNLMDGKNEVS-WNSIIAAYGNHG 596



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 172/366 (46%), Gaps = 13/366 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  +F E+     + WN MI G    G+ D+AL  + KM    V P  +TF  ++     
Sbjct: 65  AGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIK---- 120

Query: 160 ACHGKQ-------IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           AC G         +H +    G  + ++  G++LI +Y   G +  A  VF  +   D I
Sbjct: 121 ACGGLNNVPLCMVVHDTARSLGFHV-DLFAGSALIKLYADNGYIRDARRVFDELPLRDTI 179

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WN ++ G   SG  + A+  F  MR S    +  T + +++ C    N   G Q+  L 
Sbjct: 180 LWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLV 239

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +  GF  +  V +  + ++SKC  L  + +LF  + + D    N +I+ Y + GF + A 
Sbjct: 240 IGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAA 299

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M+   ++P   T +  L SI     + H  + HS  ++     +  + S+L+++Y
Sbjct: 300 PLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVY 359

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G ++ + +IF +    D+     ++ G   +G   + ++ F  L++EG+  + +T+A
Sbjct: 360 FKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMA 419

Query: 452 AVLLAC 457
           +VL AC
Sbjct: 420 SVLPAC 425



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 10/305 (3%)

Query: 155 STVSSACHGKQIHGSMIRSGL----SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           S  S     +Q+H  +I  G+    + S+ VLG     +Y   G    A  +F  +E   
Sbjct: 22  SDASMVQQARQVHTQVIVGGMGDVCAPSSRVLG-----LYVLCGRFRDAGNLFFELELRY 76

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            + WN +I G +  G+ + AL  ++ M  S  SPD+YT   VI AC  L N+     V  
Sbjct: 77  ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHD 136

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            +  +GF  +    SA I L++    + D+ R+F++L   D  + NVM+  Y + G  + 
Sbjct: 137 TARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDN 196

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+  F  M          T +C+LS          G+Q H + I SGF+ +  VA++L+ 
Sbjct: 197 AIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVA 256

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K G++  + ++F  + + D V+WN ++ G  QNG   E   +F  ++  G+ PD +T
Sbjct: 257 MYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVT 316

Query: 450 LAAVL 454
            A+ L
Sbjct: 317 FASFL 321



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 130/286 (45%), Gaps = 36/286 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  +    K +H H+ K        +G+   D+Y++ G  D   + F  +  
Sbjct: 419 ASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSD 478

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ + W                               NSMIS ++  G  + A+++F +M
Sbjct: 479 RDSVCW-------------------------------NSMISSFSQNGKPEIAIDLFRQM 507

Query: 139 QLQGVRPSGF---TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + G +       +     + + +  +GK++HG +IR+  S S+  + ++LIDMY K G 
Sbjct: 508 GMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFS-SDTFVASTLIDMYSKCGN 566

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A+ VF  M+  + +SWNS+I+   N G     LD ++ M  +G  PD  T  ++I+A
Sbjct: 567 LALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISA 626

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           C     +D+G   F  ++ + G  +     +  +DL+ +  R+ ++
Sbjct: 627 CGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEA 672



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 25/283 (8%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           +  AC+    + + +QV    +  G        S  + L+  C R  D+  LF +L+   
Sbjct: 17  LFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRY 76

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV------LSSIPIPPVEHG 365
               N MI      G+ + AL  +  ML  ++ P ++T   V      L+++P+  V   
Sbjct: 77  ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV--- 133

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
              H  A   GF  +    S+L+++YA  G I  +  +F +L  RD + WN ++ G  ++
Sbjct: 134 --VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKS 191

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-- 483
           G     +  F E+       + +T   +L  C   G        F A  + +G++ G   
Sbjct: 192 GDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRG-------NFCAGTQLHGLVIGSGF 244

Query: 484 ----EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
               +    ++ +  + G L  A  + +TMP Q     W  ++
Sbjct: 245 EFDPQVANTLVAMYSKCGNLLYARKLFNTMP-QTDTVTWNGLI 286



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           V+   Q H+  I  G       +S ++ +Y   G    +  +F +L+ R  + WN ++ G
Sbjct: 27  VQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRG 86

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM-LVFSAMKEEYGVM 480
           L   G     L  + ++L   + PD+ T   V+ AC  GG  +  + +V        G  
Sbjct: 87  LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC--GGLNNVPLCMVVHDTARSLGFH 144

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV-KLTENVAE 539
                 + +I L    G +  A  +   +P +    +W  +LR     GD         E
Sbjct: 145 VDLFAGSALIKLYADNGYIRDARRVFDELPLRDTI-LWNVMLRGYVKSGDFDNAIGTFCE 203

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
                 + + + Y+ +    A RG + A  ++  ++  +G
Sbjct: 204 MRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSG 243


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/569 (31%), Positives = 302/569 (53%), Gaps = 38/569 (6%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A+ VF  I EP+ +SWN+MI G+A       AL ++  M   G+ P+ +TF  L  +
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 157 VS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL--------- 204
            +   +A  GKQIH  +++ GL++ ++ +  SLI MY + G++  A  VF          
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTV-DLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 205 ------------NMEEL----------DIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
                       NM++           D++SWN++ISG    G  + AL+ F  M     
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
            PDE T++ V++ CT   N++ G+Q+ +     GF SN  +++A IDL+SKC  +E +  
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPP 361
           LFE L   D    N +I  Y      + AL +FQ ML+    P + T+  +L +   +  
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 362 VEHGSQFHSMAIKS--GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
           ++ G   H    K   G  +N  + +SL++MYAK G+I+++ ++F  +  + L S N ++
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            G   +GRA    D+   + ++G+ PD IT   +L AC++ G  D G  +F +M  +Y +
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  EHY C+IDLL ++G   +A ++ ++M  +P   IW S+L+A  I+ +++L E +A+
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQ 506

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
           ++M ++  +P  Y LL+  YA   RW+ + RV+ ++   G+ KV GCS I I + ++ F 
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFL 566

Query: 600 AGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            G+  H   ++IY +L  +   + + G V
Sbjct: 567 IGDKFHPQNKEIYKMLEEIDSLLAETGFV 595



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L   C   K+    K IH  + K G     ++    + +Y++ G  +D  ++FD    ++
Sbjct: 84  LFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRD 143

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G     N+D A K+FDEIP  DVVSWN+MISGYA  G    ALE+F++M  
Sbjct: 144 VVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMK 203

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V+P   T + +LST + + +   G+QIH  +   G   SN+ L N+LID+Y K G + 
Sbjct: 204 MDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFG-SNLKLVNALIDLYSKCGEME 262

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  ++  D+ISWN+LI G     + + AL  F  M   G +P++ T+  ++ AC 
Sbjct: 263 RAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACA 322

Query: 258 KLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  +D G+   V+      G ++N+ + ++ ID+++KC  +E + ++F+ +     +  
Sbjct: 323 HLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSC 382

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G  + A +L   M ++ I P + T   +LS+
Sbjct: 383 NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSA 423



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 43/266 (16%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K   S  + ++  C    + +  + IH  +   GF ++  L N  +DLYS+ G  +    
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           LF+ +  K+ ISW                               N++I GYA   +   A
Sbjct: 267 LFEGLQYKDVISW-------------------------------NTLIGGYAYINHHKEA 295

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIR--SGLSLSNVVLG 183
           L +F +M   G  P+  T   +LS + +  H      G+ IH  + +   G+ ++N  L 
Sbjct: 296 LLVFQEMLKLGETPNDVT---MLSILPACAHLGAIDIGRWIHVYIDKKLKGI-ITNTSLQ 351

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
            SLIDMY K G +  A  VF  +    + S N++I G    G  + A D    M+  G  
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIE 411

Query: 244 PDEYTISIVINACTKLRNLDKGKQVF 269
           PD+ T   +++AC+     D G+++F
Sbjct: 412 PDDITFVGLLSACSHAGLSDLGRKIF 437


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/583 (30%), Positives = 291/583 (49%), Gaps = 49/583 (8%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
            L K   + +A ++FDE+P  D V+WN+M++ Y+  G    AL +F  M++   RP  FT
Sbjct: 14  ALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFT 73

Query: 150 FSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           F+  LS  +       G +IH  ++ SG   S++ +GNSLIDMYGK      A  VF  M
Sbjct: 74  FTATLSACAGLGELRRGMKIHAQVVVSGCQ-SSLPVGNSLIDMYGKCLSATSARRVFEEM 132

Query: 207 EELDIISWNSLI-----SGCFN---------------------SGYG-----ELALDQFY 235
             ++ +SW SL+     SG F+                     SGYG     EL L  F 
Sbjct: 133 SIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFK 192

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF-----------LSNSIVL 284
            MR     PD++T S ++NA  +L+    G  +    +K G+           +   +  
Sbjct: 193 KMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSW 252

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A ID   K     ++  +F+     +      MI+ Y R G GE AL  F  M+   I+
Sbjct: 253 NAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQ 312

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P +FT   VL +   +  + HG   H   I  GF +   V + L+ MYAK G I  S   
Sbjct: 313 PDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTA 372

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++  +DLVSWN ++ GL  +G A + L+++EE++  G+ PD++T   +L+ C++ G +
Sbjct: 373 FKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLI 432

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS--TMPFQPGCSIWESI 521
           +KG  +F +M   YG+    EH  C++DLL + G L +A ++    +   +   S+ E++
Sbjct: 433 EKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEAL 492

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A   + +V++  N+ E +   +    + Y LL+  Y + G+W+    V+K M  +G+ 
Sbjct: 493 LGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVK 552

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           K+ GCSWI ++N++  F AG   H   +++  +L  L +EM +
Sbjct: 553 KMPGCSWIEVRNKVTVFVAGNHSHPYMEELCKILNFLKFEMRN 595



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 238/528 (45%), Gaps = 69/528 (13%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A+LS C+ L +     K       IH  +   G  +   +GN  +D+Y +  ++    ++
Sbjct: 76  ATLSACAGLGELRRGMK-------IHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F+E+   N +SW   L     S   D A  VFD +P+   ++WN MISGY  CG  +  L
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCL 188

Query: 133 EMFSKMQLQGVRPSGFTFSIL---LSTVSSACHGKQIHGSMIRSG----------LSLSN 179
            +F KM+   ++P  +TFS L   L  +    +G  +HG +I+SG          + +  
Sbjct: 189 GLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILT 248

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
            V  N++ID + K+G  + AF VF    E +++SW S+I+G   +G+GE AL  F  M  
Sbjct: 249 QVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMME 308

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           +   PD++T   V++AC+ L  L  GK +    +  GF +   V +  +++++KC  ++ 
Sbjct: 309 NHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQG 368

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-----LSCVL 354
           S   F+++   D    N M+   G +G    ALEL++ M+   ++P + T     ++C  
Sbjct: 369 SNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSH 428

Query: 355 SSIPIPPVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           S +    +E G   F SM    G          ++++  + G +  + E+   +D+    
Sbjct: 429 SGL----IEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQAREL---VDE---- 477

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
                    ++ GRA       E  L E L       + V +  N G ++     VF   
Sbjct: 478 --------YSRTGRA-------ETSLPEALLGACFAHSEVRMGANLGEYLK----VFEPQ 518

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ-----PGCS 516
           K        E  Y  + +L C +GQ  +A  +  TM        PGCS
Sbjct: 519 K--------EMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCS 558



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 159/339 (46%), Gaps = 43/339 (12%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           S++    S I    KLG +  A  +F  M   D ++WN++++     G  + AL  F+ M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R +   PD +T +  ++AC  L  L +G ++ A  V  G  S+  V ++ ID++ KC   
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 298 EDSVRLFEQLD-----RW-------------DYAVI-------------NVMISTYGRYG 326
             + R+FE++       W             D A +             N+MIS YG+ G
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCG 182

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDS------ 379
             E+ L LF+ M  + ++P ++T S +++++  +    +G   H   IKSG+D       
Sbjct: 183 DVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFE 242

Query: 380 -----NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
                  V  +++++ + K G    +  +F    ++++VSW +++ G  +NG   + L  
Sbjct: 243 SIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSF 302

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           F +++E  + PD  T  AVL AC+    +  G ++  ++
Sbjct: 303 FVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSI 341



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 109/214 (50%), Gaps = 10/214 (4%)

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           ++ I   +K  R+  + RLF+++   D    N M+++Y + G  + AL LF  M   + R
Sbjct: 9   TSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSR 68

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P  FT +  LS+   +  +  G + H+  + SG  S+  V +SL++MY K  S  S+  +
Sbjct: 69  PDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG--G 461
           F ++   + VSW +++   T +G       VF+ +      P ++ +A  ++   YG  G
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGM------PKKVEIAWNIMISGYGQCG 182

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            V+  + +F  M+E+  + P +  ++ +++ LC+
Sbjct: 183 DVELCLGLFKKMRED-SLQPDQWTFSALVNALCE 215


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/606 (29%), Positives = 310/606 (51%), Gaps = 39/606 (6%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           K     K +H  L   G+   T+L N  +++YS+ G                        
Sbjct: 19  KRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCG------------------------ 54

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                   LD ALK+FD +P+ ++VSW +MISG +       A+  F  M++ G  P+ F
Sbjct: 55  -------ELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQF 107

Query: 149 TFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            FS  +   +++ S   GKQ+H   ++ G+  S + +G++L DMY K G ++ A  VF  
Sbjct: 108 AFSSAIRACASLGSIEMGKQMHCLALKFGIG-SELFVGSNLEDMYSKCGAMFDACKVFEE 166

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +SW ++I G    G  E AL  F  M     + D++ +   + AC  L+    G
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 226

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYG 323
           + V +  VK+GF S+  V +A  D++SK   +E +  +F  +D     V++   +I  Y 
Sbjct: 227 RSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYV 285

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
                E  L +F  + R+ I P EFT S ++ +      +E G+Q H+  +K  FD +  
Sbjct: 286 ETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF 345

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V+S L++MY K G ++ + + F ++     ++WN+++    Q+G   + +  FE +++ G
Sbjct: 346 VSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRG 405

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + P+ IT  ++L  C++ G V++G+  F +M + YGV+PGEEHY+C+IDLL +AG+L +A
Sbjct: 406 VKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEA 465

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            +  + MPF+P    W S L A  I+GD ++ +  AE+++ L+  +     LL+  YA  
Sbjct: 466 KEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANE 525

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
            +WE +  V+  MR   + K+ G SW+ +  + + F A +  H     IY  L  L  ++
Sbjct: 526 RQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQI 585

Query: 623 EDEGCV 628
           +  G V
Sbjct: 586 KAAGYV 591



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 187/394 (47%), Gaps = 36/394 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  I  C S  S +  K +H    K G  +  ++G+   D+YS+ G   D  ++F+E+P 
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 169

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSK 137
           K+ +SW   + G  K    + AL  F ++ + +V +  + + S   +CG    AL+    
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG----ALK---- 221

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                 AC  G+ +H S+++ G   S++ +GN+L DMY K G +
Sbjct: 222 ----------------------ACKFGRSVHSSVVKLGFE-SDIFVGNALTDMYSKAGDM 258

Query: 197 YYAFGVF-LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  VF ++ E  +++S+  LI G   +   E  L  F  +R  G  P+E+T S +I A
Sbjct: 259 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 318

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C     L++G Q+ A  +K+ F  +  V S  +D++ KC  LE +++ F+++        
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAW 378

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
           N ++S +G++G G+ A++ F+ M+   ++P   T   +L+       VE G   F+SM  
Sbjct: 379 NSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 438

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
             G        S ++++  + G +  + E   ++
Sbjct: 439 TYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 472



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 163/363 (44%), Gaps = 36/363 (9%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   ++ VI    K + L +GKQ+ AL +  G+   + + +  ++++SKC  L+ +++LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
           + + + +      MIS   +      A+  F  M      PT+F  S  + +   +  +E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H +A+K G  S   V S+L +MY+K G++  + ++F ++  +D VSW  ++ G +
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAV------LLACNYGGFV---------DKGML 468
           + G   E L  F+++++E +  D+  L +       L AC +G  V         +  + 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 469 VFSAMKEEY---GVMPGEEH-------------YACIIDLLCQAGQLGKAIDITSTMPFQ 512
           V +A+ + Y   G M    +             Y C+ID   +  Q+ K + +   +  Q
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 513 ---PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAI 568
              P    + S+++A A    ++    +  ++M +     P   S+L   Y   G  E  
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHA 363

Query: 569 VRV 571
           ++ 
Sbjct: 364 IQA 366


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 184/615 (29%), Positives = 300/615 (48%), Gaps = 31/615 (5%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C   +  C S K       IHG L K G ++  +L +  +++Y + G   +   +F+ I 
Sbjct: 145 CLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIR 204

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
               +  N+ +                          WN MI GY S      ALE+F +
Sbjct: 205 DNELVGRNMAV--------------------------WNVMILGYVSNECLSLALELFVE 238

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G+ P   T  ++L   S       GKQIHG ++  GL   +V +G +L++MY K G
Sbjct: 239 MLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLD-DDVRVGTALMEMYFKCG 297

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               +  +F   +  +++ W S++  C  +GY   AL+ F         PD   +   + 
Sbjct: 298 DPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALR 357

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+ L    +G  +   ++K+GF S+  V  A +D + KC  +E + ++F  L   D   
Sbjct: 358 ACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVS 417

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAI 373
            N +IS + +    + AL+ F+ M  + I+P   T++C+LS    +  +    + H   +
Sbjct: 418 WNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLL 477

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           +  F++NA+V +SL+  YAK G I SS  +F KL  R+ V+WN+I++G   +GR  E   
Sbjct: 478 RHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFA 537

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            FE++ E  + PD  T  ++L +C++ G VD G   F++M E+Y + P  E Y C++DLL
Sbjct: 538 TFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLL 597

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A D+  +MP  P   IW S+L +   +G+ KL E VA  + +L   S     
Sbjct: 598 GRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRV 657

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL   Y   G    + RV+  +++ G+ K  GCSWI + N I+ F AG+  H     IY 
Sbjct: 658 LLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDIYA 717

Query: 614 VLRLLTWEMEDEGCV 628
            +  L+ EM+  G V
Sbjct: 718 TIESLSLEMKRVGYV 732



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 213/441 (48%), Gaps = 51/441 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHGHL K GF    ++ N  L +Y + G   + + +F+ + +++ +SW         
Sbjct: 58  GKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSW--------- 108

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF--- 150
                                 N+MISG+   G    +L MF +M    V+  G ++   
Sbjct: 109 ----------------------NTMISGFCQSGDYVKSLVMFRRM----VKECGGSYHNR 142

Query: 151 ----SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
               + L S  S  C  HG +IHG +++ G+  S+  L ++LI+MY K G +  A  VF 
Sbjct: 143 VACLAALSSCASIKCLTHGLEIHGFLVKKGVD-SDEFLVSALIEMYMKCGDIKNAENVFE 201

Query: 205 NMEELDIIS-----WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
            + + +++      WN +I G  ++    LAL+ F  M   G SPD  T+ +V+  C++L
Sbjct: 202 RIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQL 261

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +L  GKQ+  L + +G   +  V +A ++++ KC   E S+++F++    +  +   ++
Sbjct: 262 LDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVM 321

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFD 378
               + G+   ALE F   + +   P    L   L +     ++  G   H  AIK GFD
Sbjct: 322 LNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFD 381

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+  V  +L++ Y K G ++ + ++F  L  RDLVSWN ++ G  QN  A E L  F ++
Sbjct: 382 SDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDM 441

Query: 439 LEEGLPPDRITLAAVLLACNY 459
             + + P+ +T+A +L  C +
Sbjct: 442 QSKQIKPNTVTMACILSVCTH 462



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 178/371 (47%), Gaps = 13/371 (3%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH----GKQI 166
           DV   N MI      G+ + A+ ++      G     F F   L       +    GKQI
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           HG +++ G  L ++ + NSL+ MY K G    A  +F  MEE D +SWN++ISG   SG 
Sbjct: 62  HGHLLKFGF-LQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGD 120

Query: 227 GELALDQFYSM--RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
              +L  F  M     G   +       +++C  ++ L  G ++    VK G  S+  ++
Sbjct: 121 YVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLV 180

Query: 285 SATIDLFSKCNRLEDSVRLFE-----QLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           SA I+++ KC  ++++  +FE     +L   + AV NVMI  Y       +ALELF  ML
Sbjct: 181 SALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEML 240

Query: 340 REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
              I P   T+  VL     +  +  G Q H + +  G D +  V ++LMEMY K G  +
Sbjct: 241 ELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPE 300

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           +S +IF +    +LV W ++M+   QNG   E L+ F E + +   PD + L A L AC+
Sbjct: 301 TSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACS 360

Query: 459 YGGFVDKGMLV 469
           +     +GM +
Sbjct: 361 FLSLKPRGMAI 371



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 134/259 (51%), Gaps = 9/259 (3%)

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI-SIVINACTKLRNLDKGKQ 267
           +D+   N +I  C   G+ E A+  +      G+  +E+     +I A   L +++KGKQ
Sbjct: 1   MDVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQ 60

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +    +K GFL +  V ++ + ++ KC    ++V +FE+++  D    N MIS + + G 
Sbjct: 61  IHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGD 120

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVL---SSIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
              +L +F+ M++E        ++C+    S   I  + HG + H   +K G DS+  + 
Sbjct: 121 YVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLV 180

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-----WNTIMMGLTQNGRAAETLDVFEELL 439
           S+L+EMY K G I ++  +F ++   +LV      WN +++G   N   +  L++F E+L
Sbjct: 181 SALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEML 240

Query: 440 EEGLPPDRITLAAVLLACN 458
           E G+ PD  T+  VL+ C+
Sbjct: 241 ELGISPDSSTVVVVLVLCS 259



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 5/199 (2%)

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIP-IPPVEHGSQF 368
           D + +N MI      GF E A+ ++   +       EF    C++ +   +  V  G Q 
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H   +K GF  +  V +SL+ MY K G+  ++ ++F ++++RD VSWNT++ G  Q+G  
Sbjct: 62  HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121

Query: 429 AETLDVFEELLEE--GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
            ++L +F  +++E  G   +R+   A L +C     +  G+ +   + ++ GV   E   
Sbjct: 122 VKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKK-GVDSDEFLV 180

Query: 487 ACIIDLLCQAGQLGKAIDI 505
           + +I++  + G +  A ++
Sbjct: 181 SALIEMYMKCGDIKNAENV 199


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/615 (28%), Positives = 309/615 (50%), Gaps = 44/615 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    S +    IHG + K+G      + N  L +Y +F               
Sbjct: 279 SSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKF--------------- 323

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                           + L    ++FD++   D VSWN+MI GY+  G  + ++++F +M
Sbjct: 324 ----------------NGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM 367

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             Q  +P   T + +L     +     GK +H  MI SG    +    N LI+MY K G 
Sbjct: 368 VNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE-CDTTASNILINMYAKCGN 425

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +  VF  M+  D +SWNS+I+    +G  + A+  F  M+ +   PD  T  ++++ 
Sbjct: 426 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSM 484

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            T+L +L  GK++     K+GF SN +V +  +D+++KC  + DS+++FE +   D    
Sbjct: 485 STQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITW 544

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV----EHGSQFHSM 371
           N +I++        + L +   M  E + P   T+   LS +P+  +      G + H  
Sbjct: 545 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATM---LSILPVCSLLAAKRQGKEIHGC 601

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G +S+  V + L+EMY+K GS+ +S ++F  +  +D+V+W  ++      G   + 
Sbjct: 602 IFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKA 661

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           +  F E+   G+ PD +   A++ AC++ G V++G+  F  MK++Y + P  EHYAC++D
Sbjct: 662 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 721

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL ++  L KA D   +MP +P  SIW ++L A  + GD ++ + V+ER+++L       
Sbjct: 722 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGY 781

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y L++  YA  G+W+ +  ++K ++  G+ K  GCSW+ I+N++Y F  G       +++
Sbjct: 782 YVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEV 841

Query: 612 YLVLRLLTWEMEDEG 626
             +L +L   M  EG
Sbjct: 842 NKLLGMLAGLMAKEG 856



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 142/519 (27%), Positives = 253/519 (48%), Gaps = 46/519 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C     F+ AK+IH  +  +GF +  Y+GN  +D+Y RF   D   ++F+E+P ++
Sbjct: 180 VINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 239

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               NS+ISGY + GY + ALE++ + + 
Sbjct: 240 VVSW-------------------------------NSLISGYNANGYWNEALEIYYRFRN 268

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV P  +T S +L     + S   G  IHG + + G+   +V++ N L+ MY K   L 
Sbjct: 269 LGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK-KDVIVNNGLLSMYCKFNGLI 327

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               +F  M   D +SWN++I G    G  E ++  F  M  + + PD  TI+ ++ AC 
Sbjct: 328 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACG 386

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +L+ GK V    +  G+  ++   +  I++++KC  L  S  +F  +   D    N 
Sbjct: 387 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 446

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           MI+ Y + G  + A++LF+ M++ D++P   T   +LS S  +  +  G + H    K G
Sbjct: 447 MINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMG 505

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+SN VV+++L++MYAK G +  S ++F  +  RD+++WNTI+     +      L +  
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 565

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLL 493
            +  EG+ PD  T+ ++L  C+      +G  +   + +   E  V  G      +I++ 
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGN----VLIEMY 621

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
            + G L  +  +   M  +   + W +++ A  +YG+ K
Sbjct: 622 SKCGSLRNSFQVFKLMKTKDVVT-WTALISACGMYGEGK 659



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/442 (28%), Positives = 222/442 (50%), Gaps = 17/442 (3%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG---- 163
           P  +V  WNS+I      G    AL ++S+ Q   ++P  +TF     +V +AC G    
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFP----SVINACAGLLDF 190

Query: 164 ---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
              K IH  ++  G   S++ +GN+LIDMY +   L  A  VF  M   D++SWNSLISG
Sbjct: 191 EMAKSIHDRVLXMGFG-SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 249

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +GY   AL+ +Y  R  G  PD YT+S V+ AC  L ++++G  +  L  K+G   +
Sbjct: 250 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 309

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
            IV +  + ++ K N L D  R+F+++   D    N MI  Y + G  E +++LF  M+ 
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN 369

Query: 341 EDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           +  +P   T++ +L +   +  +E G   H   I SG++ +   ++ L+ MYAK G++ +
Sbjct: 370 Q-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 428

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           S E+F  +  +D VSWN+++    QNG   E + +F ++++  + PD +T   +L     
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQ 487

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G +  G  +   +  + G          ++D+  + G++G ++ +   M  +   + W 
Sbjct: 488 LGDLXLGKELHCDL-AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIIT-WN 545

Query: 520 SILRASAIYGDVKLTENVAERM 541
           +I+ +     D  L   +  RM
Sbjct: 546 TIIASCVHSEDCNLGLRMISRM 567



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 197/441 (44%), Gaps = 41/441 (9%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   + ++  C      +F K +H ++   G+   T   N  +++Y++ G      +
Sbjct: 372 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 431

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  +  K+ +SWN  +   +++ + D A+K+F                           
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF--------------------------- 464

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLID 188
                KM    V+P   T+ +LLS  +       GK++H  + + G + SN+V+ N+L+D
Sbjct: 465 -----KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFN-SNIVVSNTLVD 518

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  +  VF NM+  DII+WN++I+ C +S    L L     MR  G +PD  T
Sbjct: 519 MYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMAT 578

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           +  ++  C+ L    +GK++     K+G  S+  V +  I+++SKC  L +S ++F+ + 
Sbjct: 579 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 638

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-S 366
             D      +IS  G YG G+ A+  F  M    I P       ++ +      VE G +
Sbjct: 639 TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLN 698

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
            FH M      +      + ++++ +++  +D + +  + +  K D   W  ++     +
Sbjct: 699 YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMS 758

Query: 426 GRAAETLDVFEELLEEGLPPD 446
           G       V E ++E  L PD
Sbjct: 759 GDTEIAQRVSERIIE--LNPD 777



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 36/268 (13%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + K  V   S++Y   L+            K +H  L K+GFN++  + N  +D+Y++ G
Sbjct: 466 MMKTDVKPDSVTYV-MLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG 524

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              D L++F+ +  ++ I+WN  +   + S++ +  L+                      
Sbjct: 525 EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR---------------------- 562

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFT-FSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVV 181
                    M S+M+ +GV P   T  SIL   S +++   GK+IHG + + GL  S+V 
Sbjct: 563 ---------MISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-SDVP 612

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +GN LI+MY K G L  +F VF  M+  D+++W +LIS C   G G+ A+  F  M  +G
Sbjct: 613 VGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAG 672

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF 269
             PD      +I AC+    +++G   F
Sbjct: 673 IVPDHVAFVAIIFACSHSGLVEEGLNYF 700


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/595 (29%), Positives = 309/595 (51%), Gaps = 42/595 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C + K     + IH  + +L   ++ Y+    +D Y++ G  DD            
Sbjct: 125 VLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDD------------ 172

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA-SCGYSDYALEMFSKMQ 139
                              A +VFD++ + DVV+WNSMISG++   G  D    +  +MQ
Sbjct: 173 -------------------AKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ 213

Query: 140 LQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              V P+  T   +L   + V+S  HGK+IHG  +R G  + +VV+G  ++D+YGK   +
Sbjct: 214 -NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGF-VGDVVVGTGILDVYGKCQCI 271

Query: 197 YYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALD---QFYSMRYSGYSPDEYTISIV 252
            YA  +F  M  + + ++W++++       +   AL+   Q   ++         T++ V
Sbjct: 272 DYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATV 331

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I  C  L +L  G  +   ++K GF+ + +V +  + +++KC  +  ++R F ++D  D 
Sbjct: 332 IRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDA 391

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
                +IS Y + G  E  L +F  M    I P + TL+ VL +   +  + +GS  H  
Sbjct: 392 VSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCY 451

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AI  GF ++ ++ ++L++MYAK G ID++ ++F ++ KR +VSWNT+++    +G   E 
Sbjct: 452 AIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEA 511

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L +F+ +  EGL PD +T   ++ AC++ G V +G   F+AM +++G++P  EHYAC++D
Sbjct: 512 LLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVD 571

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG   +       MP +P   +W ++L A  +Y +V+L E V++++  L   S   
Sbjct: 572 LLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGN 631

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
           + LL+  Y+  GRW+   +V+   ++ G  K  GCSWI I   ++TF  G  + H
Sbjct: 632 FVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSH 686



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 164/535 (30%), Positives = 266/535 (49%), Gaps = 49/535 (9%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            + SL YC+ L++ C+  KS    K IH HL K            CL       T +  L
Sbjct: 5   TRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLK------------CLH-----RTHETNL 47

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYS 128
             FD +P +  +   I          L  A  VFD++P    +VV WN +I  YA  G  
Sbjct: 48  TNFD-VPFEKLVDLYI------ACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPY 100

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNS 185
           + A++++ KM   G+ P+ FTF  +L   S+   A  G++IH  + R  L  SNV +  +
Sbjct: 101 EEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLE-SNVYVSTA 159

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG--CFNSGYGELALDQFYSMRYSGYS 243
           L+D Y K G L  A  VF  M + D+++WNS+ISG       Y E+A  +      +  S
Sbjct: 160 LVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVA--RLLVQMQNDVS 217

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+  TI  V+ A  ++ +L  GK++    V+ GF+ + +V +  +D++ KC  ++ + R+
Sbjct: 218 PNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRI 277

Query: 304 FEQLDRWDYAVI-NVMISTYGRYGFGEVALELF--QLMLRED-IRPTEFTLSCVLSSIP- 358
           F+ +      V  + M+  Y    F   ALELF   LML++D I  +  TL+ V+     
Sbjct: 278 FDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCAN 337

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           +  +  G+  H  AIKSGF  + +V ++L+ MYAK G I+ +   F ++D RD VS+  I
Sbjct: 338 LTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAI 397

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G  QNG + E L +F E+   G+ P++ TLA+VL AC +        L + +    Y 
Sbjct: 398 ISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAH-----LAGLHYGSCSHCYA 452

Query: 479 VMPG--EEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ++ G   +   C  +ID+  + G++  A  +   M  + G   W +++ A  I+G
Sbjct: 453 IICGFTADTMICNALIDMYAKCGKIDTARKVFDRM-HKRGIVSWNTMIIAYGIHG 506



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 38/214 (17%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           KA+L+    ++  C       +    H +    GF A T + N  +D+Y++ G  D   +
Sbjct: 426 KATLA---SVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARK 482

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +FD + +          RG++                     SWN+MI  Y   G    A
Sbjct: 483 VFDRMHK----------RGIV---------------------SWNTMIIAYGIHGIGLEA 511

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L +F  MQ +G++P   TF  L+S  S +     GK    +M +    +  +     ++D
Sbjct: 512 LLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVD 571

Query: 189 MYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           +  + G+          M  E D+  W +L+S C
Sbjct: 572 LLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSAC 605


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/559 (31%), Positives = 298/559 (53%), Gaps = 42/559 (7%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A+ VF+ IPEP+ + WN M  G+A       AL+++  M   G+ P+ FTF  LL
Sbjct: 23  DGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLL 82

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN------ 205
            + + +     G+QIHG +++ G  L ++ +  SLI MY + G L  A  VF        
Sbjct: 83  KSCAKSKTFKEGQQIHGHVLKLGFDL-DLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 206 ----------------------MEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                                  +E+   D++SWN++ISG   +G  + AL+ F  M  +
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T++ V++AC +  +++ G+QV +     GF SN  +++A IDL+SKC  +E +
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETA 261

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             L E L   D    N +I  Y      + AL LFQ MLR    P + T+  +L +   +
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321

Query: 360 PPVEHGSQFH---SMAIKSGFDSNA-VVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVS 414
             ++ G   H      +K    +NA  + +SL++MYAK G ID++ ++       R L +
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           WN ++ G   +GRA    D+F  + + G+ PD IT   +L AC++ G +D G  +F +M+
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMR 441

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           ++Y + P  EHY C+IDLL  +G   +A ++ +TMP +P   IW S+L+A  I+G+++L 
Sbjct: 442 QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELG 501

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI-NKVTGCSWIGIKN 593
           E+ A++++ ++  +P  Y LL+  YA  G+W  + +++ ++   G+  KV GCS I I +
Sbjct: 502 ESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDS 561

Query: 594 RIYTFNAGELQHHGGQKIY 612
            ++ F  G+  H   ++IY
Sbjct: 562 VVHEFIIGDKLHPQNREIY 580



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 179/353 (50%), Gaps = 27/353 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHGH+ KLGF+   Y+    + +Y++ G  +D  ++FD    ++
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRD 140

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      +++A K+FDEIP  DVVSWN+MISGYA  G    ALE+F +M  
Sbjct: 141 VVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMK 200

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             V+P   T    ++TV SAC        G+Q+H  +   G   SN+ + N+LID+Y K 
Sbjct: 201 TNVKPDEST----MATVVSACAQSGSIELGRQVHSWINDHGFG-SNLKIVNALIDLYSKC 255

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +   +   D+ISWN+LI G  +    + AL  F  M  SG +P++ T+  ++
Sbjct: 256 GEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 315

Query: 254 NACTKLRNLDKGKQVFALSVK----VGFLSNSIVLSATIDLFSKCN------RLEDSVRL 303
            AC  L  +D G+ +     K    V   + S + ++ ID+++KC       ++ DS   
Sbjct: 316 PACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAF 375

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
              L  W     N MI  +  +G    A ++F  M +  I P + T   +LS+
Sbjct: 376 NRSLSTW-----NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSA 423



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 44/268 (16%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K   S  + ++  C    S +  + +H  +   GF ++  + N  +DLYS+ G  +   +
Sbjct: 204 KPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           L + +  K+ ISW                               N++I GY        A
Sbjct: 264 LLEGLSNKDVISW-------------------------------NTLIGGYTHMNLYKEA 292

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIR--SGLSLSNV-VL 182
           L +F +M   G  P+  T   +LS + +  H      G+ IH  + +   G+ ++N   L
Sbjct: 293 LLLFQEMLRSGETPNDVT---MLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSL 349

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             SLIDMY K G +  A  V  +      + +WN++I G    G    A D F  MR +G
Sbjct: 350 RTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNG 409

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF 269
             PD+ T   +++AC+    LD G+ +F
Sbjct: 410 IEPDDITFVGLLSACSHSGMLDLGRNIF 437


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 170/526 (32%), Positives = 278/526 (52%), Gaps = 32/526 (6%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG---- 163
           P P  +SW   I   A+ G+   A+ +F +M+      S    S+  +  S A  G    
Sbjct: 10  PWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSAL 69

Query: 164 -KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY-YAFGV------------------F 203
              +H   IRSG + ++    N+L+++Y KL   Y ++ GV                  F
Sbjct: 70  GASLHALAIRSG-AFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVF 128

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M E D++SWN+L+ GC   G    AL     M   G+ PD +T+S V+    +  ++ 
Sbjct: 129 DEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVK 188

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           +G +V   +V+ GF ++  V S+ ID+++ C R + SV++F+ L   D  + N +++   
Sbjct: 189 RGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCA 248

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDS 379
           + G  E AL +F+ ML+  +RP   T S   S IP+      +  G Q H+  I+ GF+ 
Sbjct: 249 QNGSVEEALGIFRRMLQTGVRPVPVTFS---SLIPVCGNLASLRFGKQLHAYVIRGGFED 305

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N  ++SSL++MY K G I  +  IF ++   D+VSW  ++MG   +G A E L +FE + 
Sbjct: 306 NVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERME 365

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
                P+ IT  AVL AC++ G VDKG   F +M + YG++P  EH A + D+L +AG+L
Sbjct: 366 LGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGEL 425

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            +A +  S M  +P  S+W ++LRA  ++ +  L E VA+++M+L+  S   + +L+  Y
Sbjct: 426 DEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMY 485

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
           +  GRW     ++K MRK G+ K   CSWI +KN+++ F A +  H
Sbjct: 486 SASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKLHVFVAHDRSH 531



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 203/421 (48%), Gaps = 12/421 (2%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC-LRGLLKSDNLDT 99
           L  LG + H  L  R      RF T++ +L L+ ++P     S  +  + G   S  L++
Sbjct: 66  LSALGASLHA-LAIRSGAFADRF-TANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALES 123

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
             KVFDE+ E DVVSWN+++ G A  G    AL +  KM  +G RP  FT S +L   + 
Sbjct: 124 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAE 183

Query: 160 AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G ++HG  +R+G   ++V +G+SLIDMY       Y+  VF N+   D I WNS
Sbjct: 184 CADVKRGSEVHGFAVRNGFD-NDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNS 242

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +++GC  +G  E AL  F  M  +G  P   T S +I  C  L +L  GKQ+ A  ++ G
Sbjct: 243 VLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGG 302

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F  N  + S+ ID++ KC  +  +  +F+++   D      MI  Y  +G    AL LF+
Sbjct: 303 FEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFE 362

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKT 394
            M   + +P   T   VL++      V+ G + F SM+   G        ++L ++  + 
Sbjct: 363 RMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRA 422

Query: 395 GSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           G +D +     K+  +   S W+T++     +       +V ++++E  L P  I    V
Sbjct: 423 GELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSIGSHVV 480

Query: 454 L 454
           L
Sbjct: 481 L 481



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 36/276 (13%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG   + GF+   ++G+  +D+Y+    +D  +++FD +P ++ I WN           
Sbjct: 193 VHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWN----------- 241

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                               S+++G A  G  + AL +F +M   GVRP   TFS L+  
Sbjct: 242 --------------------SVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPV 281

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              ++S   GKQ+H  +IR G    NV + +SLIDMY K G +  A  +F  M   D++S
Sbjct: 282 CGNLASLRFGKQLHAYVIRGGFE-DNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVS 340

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALS 272
           W ++I G    G    AL  F  M      P+  T   V+ AC+    +DKG + F ++S
Sbjct: 341 WTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMS 400

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
              G +      +A  D+  +   L+++     ++ 
Sbjct: 401 DHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQ 436



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI  C +  S  F K +H ++ + GF  + ++ +  +D+Y + G       +FD +  
Sbjct: 276 SSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCS 335

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + +                               SW +MI GYA  G +  AL +F +M
Sbjct: 336 PDVV-------------------------------SWTAMIMGYALHGPAREALVLFERM 364

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L   +P+  TF  +L+  S A     G +   SM      +  +    +L D+ G+ G 
Sbjct: 365 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGE 424

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGC 221
           L  A+     M+     S W++L+  C
Sbjct: 425 LDEAYNFISKMQIKPTASVWSTLLRAC 451


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/551 (31%), Positives = 292/551 (52%), Gaps = 6/551 (1%)

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
           ++N+ +    K   +     +FD +   +++SW +MI+GY    Y   A+E+  +M   G
Sbjct: 280 TYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMG 339

Query: 143 VRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
            +P  +  S +L++   V +  HG+QIH  +I+  L   N V  N+LIDMY K   L  A
Sbjct: 340 WKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVT-NALIDMYSKCNALDDA 398

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF  +    ++ +N++I G    GY   AL+ F  MR    SP   T   ++     L
Sbjct: 399 KRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAAL 458

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
             L   KQ+  L +K GF  +    SA ID++SKC+ + D+  +FE     D  V N + 
Sbjct: 459 LCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLF 518

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFD 378
           S Y      E A +L+  +     RP EFT + + ++  I   + HG QFH+  +K G +
Sbjct: 519 SGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLE 578

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+  + ++L++MYAK GS++ + +IF     +D   WN+++    Q+G+  E L +FE +
Sbjct: 579 SDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETM 638

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           +   + P+ +T  +VL AC++ GFV+ G+  +++M   YG+ PG EHYA ++ LL +AG+
Sbjct: 639 VSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAGR 697

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L +A +    M  +P   +W S+L A  ++G+V+L ++ AE  + +       Y +L+  
Sbjct: 698 LTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNI 757

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           +A +G W  + R++  M  NG+ K  G SWI +   ++ F + +  H     IYL L  L
Sbjct: 758 FASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSRDKVHDETDLIYLALDEL 817

Query: 619 TWEMEDEGCVY 629
           T +M+D GCV+
Sbjct: 818 TTQMKDVGCVH 828



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 249/542 (45%), Gaps = 38/542 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
            ++  V+K +    + +I  C+     +    +H ++ K GF    Y+G   + LY++ G
Sbjct: 132 FQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHG 191

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             D    +FD +  K  ++W   + G  KS                              
Sbjct: 192 EIDKARLVFDGLVLKTPVTWTAIITGYTKS------------------------------ 221

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
            G S+ +L++F+ M    V P  +  S +L+  S   +   GKQIH  ++RS   + +V 
Sbjct: 222 -GRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKM-DVS 279

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             N LID Y K G +     +F  ++  +IISW ++I+G   + Y   A++    M   G
Sbjct: 280 TYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMG 339

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           + PDEY  S V+ +C  +  L  G+Q+ +  +KV    ++ V +A ID++SKCN L+D+ 
Sbjct: 340 WKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAK 399

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIP 360
           R+F+ +        N MI  Y R G+   ALE+FQ M  + + P+  T +S +  S  + 
Sbjct: 400 RVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALL 459

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            ++   Q H + IK GF  +   +S+L+++Y+K   I  +  +F     +D+V WN++  
Sbjct: 460 CLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFS 519

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G     ++ E   ++ +L      P+  T AA+  A +    +  G   F     + G+ 
Sbjct: 520 GYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQ-FHNQVMKMGLE 578

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                   ++D+  + G + +A  I S+  ++   + W S++   A +G V+    + E 
Sbjct: 579 SDPFITNALVDMYAKCGSVEEAEKIFSSSVWK-DTACWNSMISMYAQHGKVEEALRMFET 637

Query: 541 MM 542
           M+
Sbjct: 638 MV 639



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 194/374 (51%), Gaps = 12/374 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ L    K  ++  A  +FD++P  ++VSW+S++S Y   GY++ AL  F + Q   V 
Sbjct: 79  NLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVD 138

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
                   +L+++  AC        G Q+H  +I+SG    +V +G SL+ +Y K G + 
Sbjct: 139 KLN---EYILASIIRACVQRDGGEPGSQVHSYVIKSGFG-EDVYVGTSLVVLYAKHGEID 194

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +     ++W ++I+G   SG  E++L  F  M  S   PD+Y +S ++NAC+
Sbjct: 195 KARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACS 254

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  L  GKQ+ A  ++     +    +  ID ++KC R++    LF++LD  +      
Sbjct: 255 VLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTT 314

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           MI+ Y +  +   A+EL   M R   +P E+  S VL+S   +  ++HG Q HS  IK  
Sbjct: 315 MIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVC 374

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            + +  V ++L++MY+K  ++D +  +F  +    +V +N ++ G ++ G     L+VF+
Sbjct: 375 LEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQ 434

Query: 437 ELLEEGLPPDRITL 450
           E+  + + P  +T 
Sbjct: 435 EMRLKHVSPSFLTF 448



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 206/455 (45%), Gaps = 43/455 (9%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS ++  C S  +    + IH ++ K+      ++ N  +D+YS+    DD  ++FD + 
Sbjct: 347 CSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVT 406

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
             + + +N  + G                               Y+  GY   ALE+F +
Sbjct: 407 CHSVVYYNAMIEG-------------------------------YSRQGYLCGALEVFQE 435

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+L+ V PS  TF  LL   ++       KQIHG +I+ G SL      ++LID+Y K  
Sbjct: 436 MRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFT-SSALIDVYSKCS 494

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF      DI+ WNSL SG       E A   +  ++ S   P+E+T + +  
Sbjct: 495 CIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTT 554

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A + L +L  G+Q     +K+G  S+  + +A +D+++KC  +E++ ++F      D A 
Sbjct: 555 AASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTAC 614

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N MIS Y ++G  E AL +F+ M+  +I P   T   VLS+   +  VE G Q ++   
Sbjct: 615 WNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMA 674

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD-LVSWNTIMMGLTQNGRAAETL 432
           + G +      +S++ +  + G +  + E   K+  R   + W +++       R    +
Sbjct: 675 RYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSAC----RVFGNV 730

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
           ++ +   E  +  D +   + ++  N   F  KGM
Sbjct: 731 ELAKHAAEMAISIDPMDSGSYVMLSNI--FASKGM 763



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 134 MFSKMQLQGVRPSGFTFS-ILLSTVS--SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           M      Q V+  G   + +LL+ VS  S  + +++H  ++  GL   +V L N L+  Y
Sbjct: 27  MLPSFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQY-DVFLSNLLLHSY 85

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP-DEYTI 249
            K+G ++ A  +F  M   +++SW+S++S     GY E AL  F   + +     +EY +
Sbjct: 86  FKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYIL 145

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           + +I AC +    + G QV +  +K GF  +  V ++ + L++K   ++ +  +F+ L  
Sbjct: 146 ASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVL 205

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
                   +I+ Y + G  EV+L+LF LM+  ++ P ++ LS +L++  +   ++ G Q 
Sbjct: 206 KTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQI 265

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  ++S    +    + L++ Y K G + +   +F +LD ++++SW T++ G  QN   
Sbjct: 266 HAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYD 325

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLAC 457
            E +++  E+   G  PD    ++VL +C
Sbjct: 326 WEAVELVGEMFRMGWKPDEYACSSVLTSC 354



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           FLSN ++ S     + K   + D+  LF+++   +    + ++S Y + G+ E AL  F 
Sbjct: 76  FLSNLLLHS-----YFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFL 130

Query: 337 LMLREDI-RPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
              R  + +  E+ L+ ++ + +     E GSQ HS  IKSGF  +  V +SL+ +YAK 
Sbjct: 131 EFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKH 190

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G ID +  +F  L  +  V+W  I+ G T++GR+  +L +F  ++E  + PD+  L+++L
Sbjct: 191 GEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSIL 250

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL--GKAI 503
            AC+  G++  G  + + +      M     Y  +ID   + G++  GKA+
Sbjct: 251 NACSVLGYLKGGKQIHAYVLRSETKMDVST-YNVLIDFYTKCGRVKAGKAL 300


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 184/620 (29%), Positives = 301/620 (48%), Gaps = 78/620 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++KA V  +  ++ S +   C    +      +HGH  K  F     +G   LD+Y    
Sbjct: 266 MQKAGVGVSQSTFAS-VFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMY---- 320

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                      +K +NL  A K+F+ +P  ++ S+N++I GYA 
Sbjct: 321 ---------------------------MKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYAR 353

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
              SD  L +  ++ L G   +        + +     G Q+HG  ++S L  SN+ + N
Sbjct: 354 ---SDKGLGL-DEVSLSGAFRA-------CAVIKGDLEGLQVHGLSMKS-LCQSNICVAN 401

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +++DMYGK G L  A  VF  M   D +SWN++I+    +G  E  L  F   R      
Sbjct: 402 AILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRI----- 456

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
                                     +  ++G   +S V  A ID++SKC  +E + +L 
Sbjct: 457 --------------------------IKSRLGL--DSFVGIALIDMYSKCGMMEKAEKLH 488

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
           ++L        N +IS +      E A + F  ML   + P  FT + +L +   +  VE
Sbjct: 489 DRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVE 548

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H+  IK    S+A ++S+L++MY+K G++     IF K   RD V+WN ++ G  
Sbjct: 549 LGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA 608

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           Q+G   E L +FE +  E + P+  T  AVL AC + G V+KG+  F +M   YG+ P  
Sbjct: 609 QHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQL 668

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY+C++D++ ++GQ+ KA+++   MPF+    IW ++L    I+G+V++ E  A  ++ 
Sbjct: 669 EHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQ 728

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L+      Y LL+  YA  G W  + +++K+MR NG+ K  GCSWI IK+ ++ F  G+ 
Sbjct: 729 LEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDK 788

Query: 604 QHHGGQKIYLVLRLLTWEME 623
            H   ++IY  L +LT EM+
Sbjct: 789 AHPRSKEIYENLDVLTDEMK 808



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 214/420 (50%), Gaps = 17/420 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K+    K  H  +    F    ++ N  + +Y +    +   ++FD +PQ
Sbjct: 46  SHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQ 105

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SWN  L G     ++  A K+FD +PE DVVSWNS+ISGY   G     +++F +M
Sbjct: 106 RDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQM 165

Query: 139 QLQGVRPSGFTFSILLSTVSS-ACHGK--QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G      TF+++L + SS   HG   QIHG  ++ G    +VV G++L+DMY K   
Sbjct: 166 GRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFD-CDVVTGSALLDMYAKCKK 224

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +   F +M E + +SW+++I+GC  +      L+ F  M+ +G    + T + V  +
Sbjct: 225 LDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRS 284

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L  G Q+   ++K  F ++ ++ +AT+D++ KCN L D+ +LF  L   +    
Sbjct: 285 CAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSY 344

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
           N +I  Y R   G   L L ++ L    R      +C +    I     G Q H +++KS
Sbjct: 345 NAIIVGYARSDKG---LGLDEVSLSGAFR------ACAV----IKGDLEGLQVHGLSMKS 391

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
              SN  VA+++++MY K G++  +  +F ++  RD VSWN I+    QNG   +TL +F
Sbjct: 392 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF 451



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 36/267 (13%)

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           S +  L +  F S  Y      + T S +   C+  + L  GKQ  A  +   F     V
Sbjct: 22  SPFKTLPISPFSS--YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFV 79

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +  I ++ KC+ LE + ++F+ + + D    N M+  Y   G   VA +LF  M   D+
Sbjct: 80  TNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDV 139

Query: 344 RP----------------------------TEF---TLSCVLSSIPIPPVEHGS--QFHS 370
                                         T F   T + VL S      +HG   Q H 
Sbjct: 140 VSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCS-SLEDHGGGIQIHG 198

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           +A+K GFD + V  S+L++MYAK   +D S + F  + +++ VSW+ I+ G  QN     
Sbjct: 199 LAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRG 258

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLAC 457
            L++F+E+ + G+   + T A+V  +C
Sbjct: 259 GLELFKEMQKAGVGVSQSTFASVFRSC 285


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 266/480 (55%), Gaps = 8/480 (1%)

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
           YAL++   +Q   + P    +S LL   + +     G+ +H  ++ S    +++VL N +
Sbjct: 73  YALDL---IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNII 129

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           ++MY K G L  A  +F  M   D+++W +LI+G   +     AL  F  M   G+ P+ 
Sbjct: 130 VNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNH 189

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           +T+S ++ A      LD G Q+ A  +K G+ S+  V SA +D++++C  ++ +   F+ 
Sbjct: 190 FTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
           +        N +IS + R G GE AL L   M R++ +PT FT S VLS+   I  +E G
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQG 309

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
              H+  IKSG    A + ++L++MYAK GSID +  +F +L K D+VSWNT++ G  Q+
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   ETLD FE++L  G+ P+ I+   VL AC++ G +D+G+  F  MK +Y V P   H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPH 428

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y   +DLL + G L +A      MP +P  ++W ++L A  ++ +++L    AER  +L 
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                P  LL+  YA  GRW  + +V+K+M+++G+ K   CSW+ I+N ++ F A +  H
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETH 548



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 171/342 (50%), Gaps = 36/342 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           S+L+  C      +  + +H HL    F + H  L N  +++Y++ G             
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG------------- 137

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                    CL         D A ++FDE+P  D+V+W ++I+G++       AL +F +
Sbjct: 138 ---------CL---------DDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQ 179

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G +P+ FT S LL    S      G Q+H   ++ G   S+V +G++L+DMY + G
Sbjct: 180 MLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ-SSVYVGSALVDMYARCG 238

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A   F  M     +SWN+LISG    G GE AL   + M+   + P  +T S V++
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLS 298

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  +  L++GK V A  +K G    + + +  +D+++K   ++D+ R+F++L + D   
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            N M++   ++G G+  L+ F+ MLR  I P E +  CVL++
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 138/292 (47%), Gaps = 35/292 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+    S    D    +H    K G+ +  Y+G+  +D+Y+R G  D     FD +P 
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N++ISG+A  G  ++AL +  KM
Sbjct: 253 KSEVSW-------------------------------NALISGHARKGEGEHALHLLWKM 281

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +  +P+ FT+S +LS  +S      GK +H  MI+SGL L    +GN+L+DMY K G 
Sbjct: 282 QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI-AFIGNTLLDMYAKAGS 340

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  + + D++SWN++++GC   G G+  LD+F  M   G  P+E +   V+ A
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    LD+G   F L  K     +       +DL  +   L+ + R   ++
Sbjct: 401 CSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM 452



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 51/228 (22%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++ +      +Y S ++  C S  + +  K +H H+ K G     ++GN  LD+Y++ G
Sbjct: 281 MQRKNFQPTHFTYSS-VLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           + DD                               A +VFD + +PDVVSWN+M++G A 
Sbjct: 340 SIDD-------------------------------AKRVFDRLVKPDVVSWNTMLTGCAQ 368

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL------- 177
            G     L+ F +M   G+ P+  +F  +L+  S        H  ++  GL         
Sbjct: 369 HGLGKETLDRFEQMLRIGIEPNEISFLCVLTACS--------HSGLLDEGLYYFELMKKY 420

Query: 178 ---SNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
               +V    + +D+ G++G+L  A      M  E     W +L+  C
Sbjct: 421 KVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGAC 468


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/616 (28%), Positives = 321/616 (52%), Gaps = 44/616 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+  C     FD    +H     +GF     + N  +D+Y +                
Sbjct: 8   AKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGK---------------- 51

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                   C R       +D A  VFD + E +VVSW +++ GY   G +  +L +  +M
Sbjct: 52  --------CSR-------VDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEM 96

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              GV+P+ FTFS  L    +     +G QIHG  ++SG    +VV GN+ IDMY K G 
Sbjct: 97  GYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVV-GNATIDMYSKCGR 155

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M   +++SWN++I+G  + G G  +L  F  M+  G  PDE+T +  + A
Sbjct: 156 IGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKA 215

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSN--SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           C  L  +  G Q+ A  +  GF  +  +I+ SA +DL++KC  L ++ ++F+++++ +  
Sbjct: 216 CGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLI 275

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTE-FTLSCVLSSIP-IPPVEHGSQFHSM 371
             + +I  + + G    A++LF+  LRE +   + F LS ++     +  VE G Q H  
Sbjct: 276 SWSALIQGFAQEGNLLEAMDLFR-QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCY 334

Query: 372 AIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
            +K  SG D +  VA+S+++MY K G  + +  +F ++  R++VSW  ++ G  ++G   
Sbjct: 335 ILKVPSGLDIS--VANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGE 392

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           + + +F  +  +G+  D +   A+L AC++ G + +    FS +   + + P  EHYAC+
Sbjct: 393 KAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACM 452

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +D+L +AGQL +A ++   M  +P   IW+++L A  ++G++++   V E +  +   +P
Sbjct: 453 VDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNP 512

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
           + Y +++  YA  G W+   RV+K+++  G+ K  G SW+ I   I+ F  G+  H   +
Sbjct: 513 VNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTE 572

Query: 610 KIYLVLRLLTWEMEDE 625
           KI+ +L+ +   +++E
Sbjct: 573 KIHEMLKEMERRVKEE 588


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 181/604 (29%), Positives = 311/604 (51%), Gaps = 42/604 (6%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           F   + +H  + K+G+  + Y G+  LD+Y+                             
Sbjct: 115 FHLGQQVHSIIIKMGYAENVYAGSALLDMYA----------------------------- 145

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
             K + L+ A   F  I + + VSWN+MI+GYA  G  + A  +   M+ +G +    T+
Sbjct: 146 --KCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTY 203

Query: 151 SILLSTVSSA--CH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LL  +  A  C+   Q+HG +I+ GL L N  + N+LI  Y K G L  A  +F +  
Sbjct: 204 APLLPLLDDADFCNLTSQLHGKIIKHGLELVNT-MCNALITSYSKCGSLDDAKRIFDSSA 262

Query: 208 EL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D+++WNSL++        +LA      M+  G+ PD Y+ + +I+AC      + G+
Sbjct: 263 GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCN--RLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            +  L +K GF  +  + +A I ++ K +   +++++ +FE L+  D    N +++   +
Sbjct: 323 SLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQ 382

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  E A++ F  M    +    ++ S VL S   +   + G Q H +A+K G +SN  V
Sbjct: 383 TGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFV 442

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +SSL+ MY+K G I+ +   F +  K   ++WN +M G  Q+G+    LD+F  + E+ +
Sbjct: 443 SSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKV 502

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D IT  AVL AC++ G V++G      M+ +YGV P  EHYAC +DL  ++G+L +A 
Sbjct: 503 KMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAK 562

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +   MPF+P  ++W++ L A    G+++L   VA  +++++      Y LL+  Y    
Sbjct: 563 ALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLM 622

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE-- 621
           RW+   +VK++M++ G+ KV G SWI + N ++ F A +  H   Q+IY +L +L  E  
Sbjct: 623 RWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLEEIT 682

Query: 622 -MED 624
            MED
Sbjct: 683 RMED 686



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 194/381 (50%), Gaps = 8/381 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L G  K   L +A  +FDE+P  D VSWN+MI+G+ +CG  + + ++   M+  G  
Sbjct: 37  NNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFE 96

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              +TF  +L  ++ A     G+Q+H  +I+ G +  NV  G++L+DMY K   L  A+ 
Sbjct: 97  LDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYA-ENVYAGSALLDMYAKCEKLEDAYL 155

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            FL++ + + +SWN++I+G   +G  E A      M   G   D+ T + ++        
Sbjct: 156 SFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADF 215

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAVINVMIS 320
            +   Q+    +K G    + + +A I  +SKC  L+D+ R+F+      D    N +++
Sbjct: 216 CNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLA 275

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDS 379
            Y      ++A +L   M      P  ++ + ++S+     +  +G   H + IK GF+ 
Sbjct: 276 AYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQ 335

Query: 380 NAVVASSLMEMYAKT--GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           +  ++++L+ MY K+  GS+  +  IF  L+ +D VSWN+I+ GL+Q G + + +  F  
Sbjct: 336 SVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLH 395

Query: 438 LLEEGLPPDRITLAAVLLACN 458
           +    +  D  + +AVL +C+
Sbjct: 396 MRSAAMDIDHYSFSAVLRSCS 416



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 15/299 (5%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H   ++ G ++++V   N++++ Y K   L  A  +F  M   D +SWN++I+G  N G 
Sbjct: 21  HSLAVKLG-TIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGN 79

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E + D    MR  G+  D YT   ++           G+QV ++ +K+G+  N    SA
Sbjct: 80  LEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSA 139

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D+++KC +LED+   F  + + +    N MI+ Y + G  E A  L   M +E  +  
Sbjct: 140 LLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVD 199

Query: 347 EFTLSCVLSSIPIPPV-------EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           + T +      P+ P+          SQ H   IK G +    + ++L+  Y+K GS+D 
Sbjct: 200 DGTYA------PLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDD 253

Query: 400 STEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           +  IF      RDLV+WN+++       +      +  ++ E G  PD  +  +++ AC
Sbjct: 254 AKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISAC 312


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/603 (28%), Positives = 307/603 (50%), Gaps = 42/603 (6%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D  + +H    K G  +  ++ N  +++YS+ G                         
Sbjct: 216 AVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGL------------------------ 251

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                  ++ A  VF ++   D+VSWN++++G     +   AL++F   +    + S  T
Sbjct: 252 -------VEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQST 304

Query: 150 FSI---LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           +S    L + +      +Q+H  +++ G      V+  +++D Y K G L  AF +FL M
Sbjct: 305 YSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM-TAIMDAYSKCGELDDAFNIFLLM 363

Query: 207 E-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
               +++SW ++I GC  +    LA   F  MR     P+E+T S V+ A   +      
Sbjct: 364 PGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILL---- 419

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ A  +K  +     V +A +  +SK    E+++ +F+ +D  D    + M+S Y + 
Sbjct: 420 PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQA 479

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKSGFDSNAVV 383
           G  + A  +F  M  + ++P EFT+S  + +   P   ++ G QFH+++IK  +     V
Sbjct: 480 GDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICV 539

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L+ MYA+ GSIDS+  +F +   RDLVSWN+++ G  Q+G + E LD F ++   G+
Sbjct: 540 GSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGI 599

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D  T  AV++ C + G V +G   F +M  ++ + P  EHY+C++DL  +AG+L + +
Sbjct: 600 EMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETM 659

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           ++   MPF  G  +W ++L A  ++ +V+L +  A++++ L+      Y LL+  YA  G
Sbjct: 660 NLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAG 719

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RW+    V+K+M    + K  GCSWI IKN++++F A +  H   ++IY  L+ +T  ++
Sbjct: 720 RWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLK 779

Query: 624 DEG 626
            EG
Sbjct: 780 QEG 782



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 203/378 (53%), Gaps = 24/378 (6%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K   ++    VF+ +P+ +VV+W S+++GY         + +F +M+ +GV P+ FTF+
Sbjct: 146 MKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFT 205

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +LS V+S      G+++H   ++ G   S V + NSLI+MY K G++  A  VF  ME 
Sbjct: 206 SVLSAVASQGAVDLGRRVHAQSVKFGCR-STVFVCNSLINMYSKCGLVEEAKAVFRQMET 264

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SWN+L++G   + +   AL  F+  R S     + T S VI  C  L+ L   +Q+
Sbjct: 265 RDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQL 324

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF------EQLDRWDYAVINVMISTY 322
            +  +K GF S+  V++A +D +SKC  L+D+  +F      + +  W       MI   
Sbjct: 325 HSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSW-----TAMIGGC 379

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPI--PPVEHGSQFHSMAIKSGFDS 379
            +     +A  LF  M  ++++P EFT S VL+ SIPI  P      Q H+  IK+ +  
Sbjct: 380 IQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLP------QIHAQIIKTNYQH 433

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              V ++L+  Y+K G+ + +  IF  +D +D+V+W+ ++   +Q G      +VF ++ 
Sbjct: 434 APSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMS 493

Query: 440 EEGLPPDRITLAAVLLAC 457
            +G+ P+  T+++ + AC
Sbjct: 494 MQGMKPNEFTISSAIDAC 511



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 189/402 (47%), Gaps = 37/402 (9%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A + K S S  S +I  C + K    A+ +H  + K GF++   +    +D YS+ G  
Sbjct: 294 RASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGEL 353

Query: 67  DDVLQLFDEIP-QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
           DD   +F  +P  +N +SW   + G ++  N D  L                        
Sbjct: 354 DDAFNIFLLMPGSQNVVSWTAMIGGCIQ--NADIPL------------------------ 387

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
                A  +FS+M+   V+P+ FT+S +L T S      QIH  +I++    +  V G +
Sbjct: 388 -----AAALFSRMREDNVKPNEFTYSTVL-TASIPILLPQIHAQIIKTNYQHAPSV-GTA 440

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           L+  Y KLG    A  +F  ++  D+++W++++S    +G  + A + F  M   G  P+
Sbjct: 441 LLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPN 500

Query: 246 EYTISIVINAC-TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           E+TIS  I+AC +    +D+G+Q  A+S+K  +     V SA + ++++   ++ +  +F
Sbjct: 501 EFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVF 560

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVE 363
           E+    D    N MIS Y ++G+ + AL+ F+ M    I     T L+ ++       V+
Sbjct: 561 ERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVK 620

Query: 364 HGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            G Q F SM +           S ++++Y++ G +D +  + 
Sbjct: 621 EGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLI 662



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 175/371 (47%), Gaps = 11/371 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNS----MISGYASCGYS-DYALEMFSKMQLQGVRPSGFTF 150
           N   A +  D +P  D  + +S     I  Y   G     AL+ F  +   G R  G   
Sbjct: 44  NAPGARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCG-RVQGAAV 102

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           S +L     +     G+Q+H   ++ G   + V +G +L+DMY K G +     VF  M 
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + ++++W SL++G          +  F+ MR  G  P+ +T + V++A      +D G++
Sbjct: 163 KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRR 222

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           V A SVK G  S   V ++ I+++SKC  +E++  +F Q++  D    N +++       
Sbjct: 223 VHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEH 282

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
              AL+LF        + ++ T S V+     +  +    Q HS  +K GF S+  V ++
Sbjct: 283 QLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTA 342

Query: 387 LMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +M+ Y+K G +D +  IF+ +   +++VSW  ++ G  QN        +F  + E+ + P
Sbjct: 343 IMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKP 402

Query: 446 DRITLAAVLLA 456
           +  T + VL A
Sbjct: 403 NEFTYSTVLTA 413



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 8/338 (2%)

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI-V 283
           G GE ALD F  +   G       +S V+  C  + +   G+Q+  L VK GF    + V
Sbjct: 80  GRGE-ALDHFVDVHRCGRVQGA-AVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGV 137

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +A +D++ KC  +ED   +FE + + +      +++ Y +       + LF  M  E +
Sbjct: 138 GTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGV 197

Query: 344 RPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P  FT + VLS++     V+ G + H+ ++K G  S   V +SL+ MY+K G ++ +  
Sbjct: 198 WPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKA 257

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC-NYGG 461
           +F +++ RD+VSWNT+M GL  N    E L +F +         + T + V+  C N   
Sbjct: 258 VFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQ 317

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
                 L    +K  +G          I+D   + G+L  A +I   MP       W ++
Sbjct: 318 LALARQLHSCVLK--HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAM 375

Query: 522 LRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQA 558
           +       D+ L   +  RM +  + P+   YS +  A
Sbjct: 376 IGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 271/521 (52%), Gaps = 37/521 (7%)

Query: 144 RPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           RPS  T+S LL     + +   G ++H     SG  +  VV+ N ++DMY K   L  A 
Sbjct: 86  RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGF-VPGVVISNRILDMYIKCNSLVNAK 144

Query: 201 GVFLNMEELDIISWNSLISG--------------------------CFNSGY-----GEL 229
            +F  M E D+ SWN +ISG                             SGY      E 
Sbjct: 145 RLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEE 204

Query: 230 ALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
           AL+ F +M R+  +  +++T+S  + A   +++L  GK++    +++G   + +V SA  
Sbjct: 205 ALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALS 264

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
           D++ KC  + ++  +F++    D      MI  Y + G  E    LF  +L+  I P EF
Sbjct: 265 DMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEF 324

Query: 349 TLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           T S VL++      E  G Q H    + GFD ++  AS+L+ MY K G+I ++  +F  +
Sbjct: 325 TFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGM 384

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
            + DLVSW +++ G  QNG+  E L  FE LL+ G  PD IT   VL AC + G VDKG+
Sbjct: 385 PRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGL 444

Query: 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
             F ++KE++G+    +HYAC+IDLL ++G+L +A DI   MP +P   +W S+L    I
Sbjct: 445 EYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRI 504

Query: 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587
           +G++KL +  AE + +++  +P  Y+ L   YA  G W  +  V+KVM   G+ K  G S
Sbjct: 505 HGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLS 564

Query: 588 WIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           WI IK  ++ F  G+  H   ++I+  L  L+  M++EG V
Sbjct: 565 WIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYV 605



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 237/477 (49%), Gaps = 18/477 (3%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           HV++ S +  S L+  CL  ++ D    +H H    GF     + NR LD+Y +  +  +
Sbjct: 83  HVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVN 142

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             +LFDE+ +++  SWNI + G  K+  L  A K+FD++ E D  SW +M SGY      
Sbjct: 143 AKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQH 202

Query: 129 DYALEMFSKMQL-QGVRPSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
           + ALE+F  MQ  +  + + FT        + + S   GK+IHG ++R GL L  VV  +
Sbjct: 203 EEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVW-S 261

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +L DMYGK G +  A  +F    + D++SW ++I   F  G  E     F  +  SG  P
Sbjct: 262 ALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWP 321

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           +E+T S V+NAC      + GKQV     ++GF  +S   S  + +++KC  ++++ R+F
Sbjct: 322 NEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVF 381

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VE 363
             + R D      +IS Y + G  + AL+ F+L+L+   +P   T   VLS+      V+
Sbjct: 382 NGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVD 441

Query: 364 HGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG 421
            G + F S+  K G    A   + L+++ +++G +  + +I  K+  + D   W +++ G
Sbjct: 442 KGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGG 501

Query: 422 LTQNG------RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
              +G      RAAE L  FE  +E   P    TLA +       G V +   V  A
Sbjct: 502 CRIHGNLKLAKRAAEAL--FE--IEPENPATYTTLANIYATAGLWGGVAEVRKVMDA 554


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 299/548 (54%), Gaps = 25/548 (4%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++ +A  VFD +P  D +SWN+MISGY         L +F  M+   V P   T  
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT-- 298

Query: 152 ILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             +++V SAC        G+++HG +I++G  ++ V + NSLI M+  +G    A  VF 
Sbjct: 299 --MTSVISACEALGDERLGREVHGYVIKTGF-VAEVSVNNSLIQMHSSVGCWDEAEMVFS 355

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  D++SW ++ISG   +G  E A++ +  M + G  PDE TI+ V++AC  L  LDK
Sbjct: 356 KMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDK 415

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-----WDYAVINVMI 319
           G  +   + + G  S  IV ++ ID++SKC  ++ ++ +F ++       W   ++ + +
Sbjct: 416 GIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL 475

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           + Y  +     AL  FQ M+   ++P   TL  VLS+   I  +  G + H+ A+++G  
Sbjct: 476 N-YRSFE----ALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  + ++L++MY + G ++ +   F   +K D+ SWN ++ G  Q G+    +++F ++
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           +E  + PD IT  ++L AC+  G V  G+  F +M+ ++ + P  +HYA ++DLL +AG+
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L  A +    MP  P  +IW ++L A  IY +V+L E  A+ + ++   S   Y LL   
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  G+W+ + RV+K+MR+N +    GCSW+ +  +++ F  G+  H   ++I  VL   
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGF 768

Query: 619 TWEMEDEG 626
             +ME  G
Sbjct: 769 YEKMEATG 776



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 6/386 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L   ++  +L  A  VF ++ E D+ SWN ++ GYA  GY D AL ++ +M   G+R
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TF  +L T   +     G+++H  +IR G   S+V + N+LI MY K G ++ A  
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE-SDVDVVNALITMYVKCGDIFSARL 251

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M   D ISWN++ISG F +      L  F+ MR     PD  T++ VI+AC  L +
Sbjct: 252 VFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD 311

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G++V    +K GF++   V ++ I + S     +++  +F +++  D      MIS 
Sbjct: 312 ERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISG 371

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y + G  E A+E + +M  E + P E T++ VLS+   +  ++ G   H  A ++G  S 
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY 431

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            +VA+SL++MY+K   ID + E+F ++  ++++SW +I++GL  N R+ E L  F++++ 
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI- 490

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKG 466
             L P+ +TL +VL AC   G +  G
Sbjct: 491 LSLKPNSVTLVSVLSACARIGALSCG 516



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 209/415 (50%), Gaps = 15/415 (3%)

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIR 172
           NS+I      G  + AL     MQ   V     T+  LL       +A  G ++H S + 
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVH-SYVS 121

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
             ++   V LGN+L+ M+ + G L  A+ VF  M E D+ SWN L+ G   +GY + AL+
Sbjct: 122 KTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            ++ M + G  PD YT   V+  C  L +L +G++V    ++ GF S+  V++A I ++ 
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV 241

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
           KC  +  +  +F+++ R D    N MIS Y         L LF +M    + P   T++ 
Sbjct: 242 KCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTS 301

Query: 353 VLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           V+S+      E  G + H   IK+GF +   V +SL++M++  G  D +  +F K++ +D
Sbjct: 302 VISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKD 361

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           LVSW  ++ G  +NG   + ++ +  +  EG+ PD IT+A+VL AC   G +DKG+    
Sbjct: 362 LVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI---- 417

Query: 472 AMKEEYGVMPGEEHYACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            M  E+    G   Y  +    ID+  +   + KA+++   +P +   S W SI+
Sbjct: 418 -MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVIS-WTSII 470



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 206/461 (44%), Gaps = 60/461 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C +       + +HG++ K GF A   + N  + ++S  G  D+   +F ++  
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +                               SW +MISGY   G  + A+E ++ M
Sbjct: 360 KDLV-------------------------------SWTAMISGYEKNGLPEKAVETYTIM 388

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + +GV P      I +++V SAC        G  +H    R+GL+ S V++ NSLIDMY 
Sbjct: 389 EHEGVVPD----EITIASVLSACAGLGLLDKGIMLHEFADRTGLT-SYVIVANSLIDMYS 443

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +  A  VF  +   ++ISW S+I G     Y       F+        P+  T+  
Sbjct: 444 KCRCIDKALEVFHRIPNKNVISWTSIILG-LRLNYRSFEALFFFQQMILSLKPNSVTLVS 502

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++AC ++  L  GK++ A +++ G   +  + +A +D++ +C R+E +   F   ++ D
Sbjct: 503 VLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-D 561

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-----CVLSSIPIPPVEHGS 366
            A  N++++ Y + G G +A+ELF  M+  D+ P E T +     C  S +    +E+  
Sbjct: 562 VASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEY-- 619

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
            F SM  K     N    +S++++  + G ++ + E   K+    D   W  ++      
Sbjct: 620 -FESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNAC--- 675

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            R  + +++ E   +     D  ++   +L CN   + D G
Sbjct: 676 -RIYQNVELGELAAQHIFEMDTKSVGYYILLCNL--YADSG 713


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 299/548 (54%), Gaps = 25/548 (4%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++ +A  VFD +P  D +SWN+MISGY         L +F  M+   V P   T  
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT-- 298

Query: 152 ILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             +++V SAC        G+++HG +I++G  ++ V + NSLI M+  +G    A  VF 
Sbjct: 299 --MTSVISACEALGDERLGREVHGYVIKTGF-VAEVSVNNSLIQMHSSVGCWDEAEMVFS 355

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  D++SW ++ISG   +G  E A++ +  M + G  PDE TI+ V++AC  L  LDK
Sbjct: 356 KMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDK 415

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-----WDYAVINVMI 319
           G  +   + + G  S  IV ++ ID++SKC  ++ ++ +F ++       W   ++ + +
Sbjct: 416 GIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL 475

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           + Y  +     AL  FQ M+   ++P   TL  VLS+   I  +  G + H+ A+++G  
Sbjct: 476 N-YRSFE----ALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  + ++L++MY + G ++ +   F   +K D+ SWN ++ G  Q G+    +++F ++
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           +E  + PD IT  ++L AC+  G V  G+  F +M+ ++ + P  +HYA ++DLL +AG+
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L  A +    MP  P  +IW ++L A  IY +V+L E  A+ + ++   S   Y LL   
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           YA  G+W+ + RV+K+MR+N +    GCSW+ +  +++ F  G+  H   ++I  VL   
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGF 768

Query: 619 TWEMEDEG 626
             +ME  G
Sbjct: 769 YEKMEATG 776



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 6/386 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L   ++  +L  A  VF ++ E D+ SWN ++ GYA  GY D AL ++ +M   G+R
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TF  +L T   +     G+++H  +IR G   S+V + N+LI MY K G ++ A  
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE-SDVDVVNALITMYVKCGDIFSARL 251

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M   D ISWN++ISG F +      L  F+ MR     PD  T++ VI+AC  L +
Sbjct: 252 VFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD 311

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G++V    +K GF++   V ++ I + S     +++  +F +++  D      MIS 
Sbjct: 312 ERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISG 371

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y + G  E A+E + +M  E + P E T++ VLS+   +  ++ G   H  A ++G  S 
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY 431

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            +VA+SL++MY+K   ID + E+F ++  ++++SW +I++GL  N R+ E L  F++++ 
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI- 490

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKG 466
             L P+ +TL +VL AC   G +  G
Sbjct: 491 LSLKPNSVTLVSVLSACARIGALSCG 516



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 209/415 (50%), Gaps = 15/415 (3%)

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIR 172
           NS+I      G  + AL     MQ   V     T+  LL       +A  G ++H S + 
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVH-SYVS 121

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
             ++   V LGN+L+ M+ + G L  A+ VF  M E D+ SWN L+ G   +GY + AL+
Sbjct: 122 KTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            ++ M + G  PD YT   V+  C  L +L +G++V    ++ GF S+  V++A I ++ 
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYV 241

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
           KC  +  +  +F+++ R D    N MIS Y         L LF +M    + P   T++ 
Sbjct: 242 KCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTS 301

Query: 353 VLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           V+S+      E  G + H   IK+GF +   V +SL++M++  G  D +  +F K++ +D
Sbjct: 302 VISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKD 361

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           LVSW  ++ G  +NG   + ++ +  +  EG+ PD IT+A+VL AC   G +DKG+    
Sbjct: 362 LVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI---- 417

Query: 472 AMKEEYGVMPGEEHYACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            M  E+    G   Y  +    ID+  +   + KA+++   +P +   S W SI+
Sbjct: 418 -MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVIS-WTSII 470



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 206/461 (44%), Gaps = 60/461 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C +       + +HG++ K GF A   + N  + ++S  G  D+   +F ++  
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +                               SW +MISGY   G  + A+E ++ M
Sbjct: 360 KDLV-------------------------------SWTAMISGYEKNGLPEKAVETYTIM 388

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + +GV P      I +++V SAC        G  +H    R+GL+ S V++ NSLIDMY 
Sbjct: 389 EHEGVVPD----EITIASVLSACAGLGLLDKGIMLHEFADRTGLT-SYVIVANSLIDMYS 443

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +  A  VF  +   ++ISW S+I G     Y       F+        P+  T+  
Sbjct: 444 KCRCIDKALEVFHRIPNKNVISWTSIILG-LRLNYRSFEALFFFQQMILSLKPNSVTLVS 502

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++AC ++  L  GK++ A +++ G   +  + +A +D++ +C R+E +   F   ++ D
Sbjct: 503 VLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEK-D 561

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-----CVLSSIPIPPVEHGS 366
            A  N++++ Y + G G +A+ELF  M+  D+ P E T +     C  S +    +E+  
Sbjct: 562 VASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEY-- 619

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
            F SM  K     N    +S++++  + G ++ + E   K+    D   W  ++      
Sbjct: 620 -FESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNAC--- 675

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            R  + +++ E   +     D  ++   +L CN   + D G
Sbjct: 676 -RIYQNVELGELAAQHIFEMDTKSVGYYILLCNL--YADSG 713


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/537 (31%), Positives = 287/537 (53%), Gaps = 10/537 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--GVRPSGFTFSILLSTV 157
           A +VFD +P  D V+WN++++GYA  G    A+E   +MQ +  G RP   T   +L   
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 158 SSA--CHG-KQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           + A   H  +++H   +R+GL  L NV    +++D Y K G +  A  VF  M   + +S
Sbjct: 130 ADARALHACREVHAFALRAGLDELVNV--STAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN++I G  ++G    A+  F+ M   G    + ++   + AC +L  LD+ ++V  L V
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLV 247

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVAL 332
           +VG  SN  V +A I  ++KC R + + ++F +L ++      N MI  + +    E A 
Sbjct: 248 RVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAE 307

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF  M  E++RP  FTL  V+ ++  I         H  +I+   D +  V ++L++MY
Sbjct: 308 RLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMY 367

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K G +  +  +F     R +++WN ++ G   +G     +++FEE+   G  P+  T  
Sbjct: 368 SKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFL 427

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +VL AC++ G VD+G   F++MK++YG+ PG EHY  ++DLL +AG+L +A      MP 
Sbjct: 428 SVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPI 487

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +PG S++ ++L A  ++ +V+L E  A+ + +L     + + LL   YA    W+ + RV
Sbjct: 488 EPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARV 547

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           +  M K G+ K  G S I +KN ++TF +G   H   + IY  L  L  E++D G V
Sbjct: 548 RTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYV 604



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 174/366 (47%), Gaps = 20/366 (5%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   ++ A  VFD +P  + VSWN+MI GYA  G +  A+ +F +M  +GV     T + 
Sbjct: 166 KCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGV---DVTDAS 222

Query: 153 LLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           +L+ +  AC         +++H  ++R GLS SNV + N+LI  Y K      A  VF  
Sbjct: 223 VLAAL-QACGELGYLDEVRRVHELLVRVGLS-SNVSVTNALITTYAKCKRADLAAQVFNE 280

Query: 206 M-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           +  +   ISWN++I G   +   E A   F  M+     PD +T+  VI A   + +  +
Sbjct: 281 LGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQ 340

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            + +   S++     +  VL+A ID++SKC R+  + RLF+          N MI  YG 
Sbjct: 341 ARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGS 400

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAV 382
           +GFG+ A+ELF+ M      P E T   VL++      V+ G + F SM    G +    
Sbjct: 401 HGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGME 460

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAETLD--VFEE 437
              +++++  + G +D +      +     +S    M+G   L +N   AE     +FE 
Sbjct: 461 HYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFEL 520

Query: 438 LLEEGL 443
             EEG+
Sbjct: 521 GPEEGV 526



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P   T + ++  C    +L  G+ V A     G  S SI  +A  +++ KC R  D+ R+
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIPIPP 361
           F+++   D    N +++ Y R G    A+E    M  E+   RP   TL  VL +     
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 362 VEHG-SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
             H   + H+ A+++G D    V++++++ Y K G+++++  +F  +  R+ VSWN ++ 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
           G   NG A E + +F  +++EG+     ++ A L AC   G++D+
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 149/374 (39%), Gaps = 82/374 (21%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   ++    + +H    + G +    +    LD Y + G  +    +FD +P +N +SW
Sbjct: 129 CADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSW 188

Query: 85  NICLRGLLKSDNLDTALKVF----------------------------DEIPE------- 109
           N  + G   + N   A+ +F                            DE+         
Sbjct: 189 NAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVR 248

Query: 110 ----PDVVSWNSMISGYASCGYSDYALE-------------------------------- 133
                +V   N++I+ YA C  +D A +                                
Sbjct: 249 VGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAER 308

Query: 134 MFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F++MQL+ VRP  FT   ++  V   S     + IHG  IR  L     VL  +LIDMY
Sbjct: 309 LFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVL-TALIDMY 367

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  +F +  +  +I+WN++I G  + G+G+ A++ F  M+ +G  P+E T  
Sbjct: 368 SKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFL 427

Query: 251 IVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
            V+ AC+    +D+G++ FA +    G           +DL  +  +L+++    + +  
Sbjct: 428 SVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMP- 486

Query: 310 WDYAVINVMISTYG 323
                I   IS YG
Sbjct: 487 -----IEPGISVYG 495



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 37/193 (19%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ IHG+  +   +   Y+    +D+YS+ G      +LFD    ++ I+WN        
Sbjct: 341 ARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWN-------- 392

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                  +MI GY S G+   A+E+F +M+  G  P+  TF  +
Sbjct: 393 -----------------------AMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSV 429

Query: 154 LSTVSSAC---HGKQIHGSMIRS-GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           L+  S A     G++   SM +  GL       G +++D+ G+ G L  A+    NM  E
Sbjct: 430 LAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYG-TMVDLLGRAGKLDEAWSFIKNMPIE 488

Query: 209 LDIISWNSLISGC 221
             I  + +++  C
Sbjct: 489 PGISVYGAMLGAC 501


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 183/627 (29%), Positives = 307/627 (48%), Gaps = 40/627 (6%)

Query: 4   YLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           Y+K+  +     +Y S ++  C    S    + +     K   +A  ++ N  LD++S+F
Sbjct: 291 YMKRLGLEADEFTYVS-VLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKF 349

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
           G  DD   LF+ I  K+ +SWN  L GL  ++                            
Sbjct: 350 GAIDDAKTLFNLITYKDTVSWNALLVGLTHNEE--------------------------- 382

Query: 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNV 180
                + A+ M   M L GV P   +F+ ++   S + +   GKQIH   ++  +  SN 
Sbjct: 383 ----DEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSI-CSNH 437

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            +G+SLID Y K G +     V   ++   I+  N LI+G   +   + A+D F  +   
Sbjct: 438 AVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRD 497

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLED 299
           G  P  +T S +++ CT L +   GKQV   ++K GFL++   +  + +  + K    ED
Sbjct: 498 GLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPED 557

Query: 300 SVRLF-EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           + +L  E  D  +      ++S Y + G+   +L  F  M   D+ P E T + +L +  
Sbjct: 558 ANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACS 617

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWN 416
            +  +  G + H + IKSGF S     S++++MY+K G I SS E F +L  K+D+  WN
Sbjct: 618 EMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWN 677

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           ++++G  +NG A E L +F+++ +  +  D +T   VL+AC + G + +G   F +M + 
Sbjct: 678 SMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKV 737

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTEN 536
           YG+MP  +HYAC IDLL + G L +A ++ + +PF+P   IW + L A  ++ D +  E 
Sbjct: 738 YGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEI 797

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            A+ +++L+  +   Y LL+  YA  G W      ++ MR+ G  K  GCSWI + N+  
Sbjct: 798 AAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGNKTS 857

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEME 623
            F   +  H G  +IY +L  LT  M 
Sbjct: 858 LFLVQDKNHLGALRIYEMLDNLTRMMH 884



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 231/487 (47%), Gaps = 49/487 (10%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A+LS CS+L        +    K  H    K G  +  +     +++Y+R G   D  ++
Sbjct: 36  ATLSACSRL-------GALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRV 88

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVF---------------------------- 104
           F  I   + + W   + G  ++     A+ +F                            
Sbjct: 89  FGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRL 148

Query: 105 -------DEIPEPD-VVSWNSMISGYAS-CGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
                    +P P   V+WN++ISGYA   G       ++  M+  G+ P+  TF+ +LS
Sbjct: 149 EDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLS 208

Query: 156 TVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             ++A     G+Q+H + +R GL  +NV +G+SLI++Y K G +  A  VF    E +++
Sbjct: 209 AAANATAFIEGRQVHAAAVRHGLD-ANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVV 267

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WN++++G   + Y   A+  F  M+  G   DE+T   V+ AC  L +   G+QV  ++
Sbjct: 268 MWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVT 327

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K    ++  V +AT+D+ SK   ++D+  LF  +   D    N ++         E A+
Sbjct: 328 IKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAI 387

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            + + M  + + P E + + V+++   I   E G Q H +A+K    SN  V SSL++ Y
Sbjct: 388 HMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFY 447

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K G ++S  ++  ++D   +V  N ++ GL QN R  E +D+F+++L +GL P   T +
Sbjct: 448 SKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFS 507

Query: 452 AVLLACN 458
           ++L  C 
Sbjct: 508 SILSGCT 514



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 138/324 (42%), Gaps = 42/324 (12%)

Query: 142 GVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           GVRP  F  +  LS  S   +   GKQ H    + GL  S      +L++MY + G +  
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLG-SGAFCAAALVNMYARCGRVGD 84

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  +   D + W S+ISG   +G  + A+  F  M   G SPD  T   V+ A T 
Sbjct: 85  ARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTA 144

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NV 317
           L                                    RLED+  L  ++      V  N 
Sbjct: 145 L-----------------------------------GRLEDARTLLHRMPAPSSTVAWNA 169

Query: 318 MISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
           +IS Y +  G       L++ M    + PT  T + +LS+         G Q H+ A++ 
Sbjct: 170 VISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRH 229

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G D+N  V SSL+ +YAK G I  +  +F    ++++V WN ++ GL +N    E + +F
Sbjct: 230 GLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMF 289

Query: 436 EELLEEGLPPDRITLAAVLLACNY 459
             +   GL  D  T  +VL AC +
Sbjct: 290 LYMKRLGLEADEFTYVSVLGACAH 313


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 170/614 (27%), Positives = 306/614 (49%), Gaps = 38/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S  +      +HG + K+G      +GN  L +Y +F               
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKF--------------- 270

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                           + L  A +VF ++   D V+WN+MI GYA  G  + ++++F  M
Sbjct: 271 ----------------ERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + G  P   + +  +     +     GK +H  +I SG     V   N LIDMY K G 
Sbjct: 315 -IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC-NILIDMYAKCGD 372

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF   +  D ++WNSLI+G   SGY +  L+ F  M+     PD  T  ++++ 
Sbjct: 373 LLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLLSI 431

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            ++L ++++G+ +    +K GF +  I+ ++ +D+++KC  ++D +++F  +   D    
Sbjct: 432 FSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIK 374
           N +I++   +    V  ++   M  E + P E T+  +L    +  V   G + H    K
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK 551

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SGF+SN  + ++L+EMY+K GS+++  ++F  + ++D+V+W  ++      G   + L  
Sbjct: 552 SGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKA 611

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++   G+ PD +   A + AC++ G V +G+  F  MK +Y + P  EHYAC++DLL 
Sbjct: 612 FQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLA 671

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           ++G L +A +   +MP +P  S+W ++L A    G+  + + V++++++L       Y L
Sbjct: 672 RSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           ++  YA  G+W+ +  V+  M+  G+ K  G SWI I+ R+Y F  G+       K+  +
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDL 791

Query: 615 LRLLTWEMEDEGCV 628
           L  L   M  EG V
Sbjct: 792 LEYLVRLMAKEGYV 805



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/549 (27%), Positives = 257/549 (46%), Gaps = 55/549 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C      +    +H H  ++GF +  Y+GN  +D+YSRF                 
Sbjct: 127 VINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFV---------------- 170

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +LD A  VF+E+   D VSWNS+ISGY S G+ + AL+M+ K ++
Sbjct: 171 ---------------DLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRM 215

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P  FT S +L    ++ +   G  +HG + + G++  +V++GN L+ MY K   L 
Sbjct: 216 TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIA-GDVIIGNGLLSMYFKFERLR 274

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M   D ++WN++I G    G  E ++  F  M   G+ PD  +I+  I AC 
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACG 333

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +  +L  GK V    +  GF  +++  +  ID+++KC  L  +  +F+     D    N 
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +I+ Y + G+ +  LE F++M  E  +P   T   +LS    +  +  G   H   IK G
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F++  ++ +SL+++YAK G +D   ++F  +   D++SWNT++              +  
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMIN 512

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM--PGEEHYACI----I 490
           E+  EGL PD  T+  +L  C+      +G       KE +G +   G E    I    I
Sbjct: 513 EMRTEGLMPDEATVLGILPMCSLLAVRRQG-------KEIHGYIFKSGFESNVPIGNALI 565

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           ++  + G L   I +   M  +     W +++ A  +YG+ K      +   D++L   L
Sbjct: 566 EMYSKCGSLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGK---KALKAFQDMELSGVL 621

Query: 551 PYSLLTQAY 559
           P S+   A+
Sbjct: 622 PDSVAFIAF 630



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 189/360 (52%), Gaps = 6/360 (1%)

Query: 99  TALKVFDEI-PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           +++ VF  I P  +V  WNS+I      G    AL  +++M+ + ++P  FTF  ++++ 
Sbjct: 72  SSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSC 131

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G  +H   +  G   S++ +GN+LIDMY +   L  A  VF  M   D +SW
Sbjct: 132 ARILDLELGCIVHEHAMEMGFE-SDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSW 190

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           NSLISG  ++G+ E ALD ++  R +G  PD +T+S V+ AC  L  + +G  V  +  K
Sbjct: 191 NSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK 250

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G   + I+ +  + ++ K  RL ++ R+F ++   D    N MI  Y + G  E +++L
Sbjct: 251 IGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKL 310

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           F  M+   +       S + +      ++ G   H   I SGF+ + V  + L++MYAK 
Sbjct: 311 FMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G + ++ E+F     +D V+WN+++ G TQ+G   E L+ F ++++    PD +T   +L
Sbjct: 371 GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLL 429



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 207/422 (49%), Gaps = 17/422 (4%)

Query: 148 FTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F  S LL T+SSA +  Q   +H  +I SGLSLS V+    LI  Y ++     +  VF 
Sbjct: 20  FLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLS-VIFSGKLISKYAQVKDPISSVSVFR 78

Query: 205 NMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
           ++    ++  WNS+I    ++G    AL  +  MR     PD +T   VIN+C ++ +L+
Sbjct: 79  SISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLE 138

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G  V   ++++GF S+  + +A ID++S+   L+++  +FE++   D    N +IS Y 
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAV 382
             GF E AL+++       + P  FT+S VL +   +  V+ G   H +  K G   + +
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + + L+ MY K   +  +  +F K+  +D V+WNT++ G  Q GR   ++ +F +++ +G
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DG 317

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE--HYAC--IIDLLCQAGQ 498
             PD +++ + + AC   G +  G  V      +Y +  G E    AC  +ID+  + G 
Sbjct: 318 FVPDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFECDTVACNILIDMYAKCGD 372

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L  A ++  T   +   + W S++      G  K      + M   + P  + + LL   
Sbjct: 373 LLAAQEVFDTTKCKDSVT-WNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSI 431

Query: 559 YA 560
           ++
Sbjct: 432 FS 433


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 170/614 (27%), Positives = 306/614 (49%), Gaps = 38/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S  +      +HG + K+G      +GN  L +Y +F               
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKF--------------- 270

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                           + L  A +VF ++   D V+WN+MI GYA  G  + ++++F  M
Sbjct: 271 ----------------ERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + G  P   + +  +     +     GK +H  +I SG     V   N LIDMY K G 
Sbjct: 315 -IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC-NILIDMYAKCGD 372

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF   +  D ++WNSLI+G   SGY +  L+ F  M+     PD  T  ++++ 
Sbjct: 373 LLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLLSI 431

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            ++L ++++G+ +    +K GF +  I+ ++ +D+++KC  ++D +++F  +   D    
Sbjct: 432 FSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIK 374
           N +I++   +    V  ++   M  E + P E T+  +L    +  V   G + H    K
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK 551

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SGF+SN  + ++L+EMY+K GS+++  ++F  + ++D+V+W  ++      G   + L  
Sbjct: 552 SGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKA 611

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++   G+ PD +   A + AC++ G V +G+  F  MK +Y + P  EHYAC++DLL 
Sbjct: 612 FQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLA 671

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           ++G L +A +   +MP +P  S+W ++L A    G+  + + V++++++L       Y L
Sbjct: 672 RSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           ++  YA  G+W+ +  V+  M+  G+ K  G SWI I+ R+Y F  G+       K+  +
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDL 791

Query: 615 LRLLTWEMEDEGCV 628
           L  L   M  EG V
Sbjct: 792 LEYLVRLMAKEGYV 805



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 151/549 (27%), Positives = 257/549 (46%), Gaps = 55/549 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C      +    +H H  ++GF +  Y+GN  +D+YSRF                 
Sbjct: 127 VINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFV---------------- 170

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +LD A  VF+E+   D VSWNS+ISGY S G+ + AL+M+ K ++
Sbjct: 171 ---------------DLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRM 215

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P  FT S +L    ++ +   G  +HG + + G++  +V++GN L+ MY K   L 
Sbjct: 216 TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIA-GDVIIGNGLLSMYFKFERLR 274

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M   D ++WN++I G    G  E ++  F  M   G+ PD  +I+  I AC 
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACG 333

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +  +L  GK V    +  GF  +++  +  ID+++KC  L  +  +F+     D    N 
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +I+ Y + G+ +  LE F++M  E  +P   T   +LS    +  +  G   H   IK G
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F++  ++ +SL+++YAK G +D   ++F  +   D++SWNT++              +  
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMIN 512

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM--PGEEHYACI----I 490
           E+  EGL PD  T+  +L  C+      +G       KE +G +   G E    I    I
Sbjct: 513 EMRTEGLMPDEATVLGILPMCSLLAVRRQG-------KEIHGYIFKSGFESNVPIGNALI 565

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           ++  + G L   I +   M  +     W +++ A  +YG+ K      +   D++L   L
Sbjct: 566 EMYSKCGSLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGK---KALKAFQDMELSGVL 621

Query: 551 PYSLLTQAY 559
           P S+   A+
Sbjct: 622 PDSVAFIAF 630



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 189/360 (52%), Gaps = 6/360 (1%)

Query: 99  TALKVFDEI-PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           +++ VF  I P  +V  WNS+I      G    AL  +++M+ + ++P  FTF  ++++ 
Sbjct: 72  SSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSC 131

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G  +H   +  G   S++ +GN+LIDMY +   L  A  VF  M   D +SW
Sbjct: 132 ARILDLELGCIVHEHAMEMGFE-SDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSW 190

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           NSLISG  ++G+ E ALD ++  R +G  PD +T+S V+ AC  L  + +G  V  +  K
Sbjct: 191 NSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK 250

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +G   + I+ +  + ++ K  RL ++ R+F ++   D    N MI  Y + G  E +++L
Sbjct: 251 IGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKL 310

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           F  M+   +       S + +      ++ G   H   I SGF+ + V  + L++MYAK 
Sbjct: 311 FMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G + ++ E+F     +D V+WN+++ G TQ+G   E L+ F ++++    PD +T   +L
Sbjct: 371 GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLL 429



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/422 (27%), Positives = 207/422 (49%), Gaps = 17/422 (4%)

Query: 148 FTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F  S LL T+SSA +  Q   +H  +I SGLSLS V+    LI  Y ++     +  VF 
Sbjct: 20  FLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLS-VIFSGKLISKYAQVKDPISSVSVFR 78

Query: 205 NMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
           ++    ++  WNS+I    ++G    AL  +  MR     PD +T   VIN+C ++ +L+
Sbjct: 79  SISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLE 138

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G  V   ++++GF S+  + +A ID++S+   L+++  +FE++   D    N +IS Y 
Sbjct: 139 LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYC 198

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAV 382
             GF E AL+++       + P  FT+S VL +   +  V+ G   H +  K G   + +
Sbjct: 199 SNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVI 258

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + + L+ MY K   +  +  +F K+  +D V+WNT++ G  Q GR   ++ +F +++ +G
Sbjct: 259 IGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DG 317

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE--HYAC--IIDLLCQAGQ 498
             PD +++ + + AC   G +  G  V      +Y +  G E    AC  +ID+  + G 
Sbjct: 318 FVPDMLSITSTIRACGQSGDLQVGKFV-----HKYLIGSGFECDTVACNILIDMYAKCGD 372

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L  A ++  T   +   + W S++      G  K      + M   + P  + + LL   
Sbjct: 373 LLAAQEVFDTTKCKDSVT-WNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSI 431

Query: 559 YA 560
           ++
Sbjct: 432 FS 433


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 325/623 (52%), Gaps = 55/623 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L+D           + IH   FKLGF  + ++    + +YSRFG          
Sbjct: 225 LKACGTLVD----------GRKIHCWAFKLGFQWNVFVAASLIHMYSRFG---------- 264

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                          G+ +S        +FD++P  D+ SWN+MISG    G +  AL++
Sbjct: 265 -------------FTGIARS--------LFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 303

Query: 135 FSKMQLQGVRPSGFTF-SIL-----LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLID 188
             +M+L+G++ +  T  SIL     L  +S+A     IH  +I+ GL   ++ + N+LI+
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM---LIHLYVIKHGLEF-DLFVSNALIN 359

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G L  A   F  M   D++SWNS+I+    +     A   F  M+ +G+ PD  T
Sbjct: 360 MYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLT 419

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQL 307
           +  + +   + R+    + V    ++ G+L   +V+ +A +D+++K   L+ + ++FE +
Sbjct: 420 LVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEII 479

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHG 365
              D    N +I+ Y + G    A+E++++M   ++I P + T   +L +   +  ++ G
Sbjct: 480 PVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 539

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H   IK+    +  VA+ L+++Y K G +  +  +F ++ +   V+WN I+     +
Sbjct: 540 MKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIH 599

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G A +TL +F E+L+EG+ PD +T  ++L AC++ GFV++G   F  M +EYG+ P  +H
Sbjct: 600 GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKH 658

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y C++DLL +AG L  A D    MP QP  SIW ++L A  I+G+++L +  ++R+ ++ 
Sbjct: 659 YGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVD 718

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             +   Y LL+  YA  G+WE + +V+ + R+ G+ K  G S I +  ++  F  G   H
Sbjct: 719 SKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSH 778

Query: 606 HGGQKIYLVLRLLTWEMEDEGCV 628
              ++IY  LR+LT +M+  G +
Sbjct: 779 PKCKEIYEELRVLTAKMKSLGYI 801



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 147/567 (25%), Positives = 262/567 (46%), Gaps = 52/567 (9%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           FAK +H  L   G     ++  R ++LY+  G                 +S + C     
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGD----------------VSLSRC----- 172

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGVRPSGFTFS 151
                      FD+IP+ DV +WNSMIS Y   G+   A+  F ++ L   +RP  +TF 
Sbjct: 173 ----------TFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 222

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            +L    +   G++IH    + G    NV +  SLI MY + G    A  +F +M   D+
Sbjct: 223 PVLKACGTLVDGRKIHCWAFKLGFQW-NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDM 281

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWN++ISG   +G    ALD    MR  G   +  T+  ++  C +L ++     +   
Sbjct: 282 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K G   +  V +A I++++K   LED+ + F+Q+   D    N +I+ Y +      A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGF-DSNAVVASSLME 389
              F  M     +P   TL  + S +      ++    H   ++ G+   + V+ +++++
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRI 448
           MYAK G +DS+ ++F  +  +D++SWNT++ G  QNG A+E ++V++ + E + + P++ 
Sbjct: 462 MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 521

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-----ACIIDLLCQAGQLGKAI 503
           T  ++L A  + G + +GM +         V+    H       C+ID+  + G+L  A+
Sbjct: 522 TWVSILPAYAHVGALQQGMKIHGR------VIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMR 562
            +   +P Q     W +I+    I+G  + T  +   M+D  + P  + +  L  A +  
Sbjct: 576 SLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 563 GRWEAIVRVKKVMRKNGIN---KVTGC 586
           G  E      ++M++ GI    K  GC
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGC 661


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 186/668 (27%), Positives = 315/668 (47%), Gaps = 75/668 (11%)

Query: 5   LKKAHVNKAS----LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           L K H + A+    L   S L+  C + KS    K +H H   LGF  H  L  + +  Y
Sbjct: 27  LIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFY 86

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           S F    D                                + V  +I  P  + WN +IS
Sbjct: 87  SSFSLLADA-----------------------------HTITVNSDIVNP--LPWNLLIS 115

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSL 177
            Y + G    AL  + +M  +GVRP  FT+  +L           G+++H S+  +    
Sbjct: 116 SYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHR 175

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            N+ + NSL+ MYGK G L  A  +F  M E D +SWN +IS   + G  + A + F  M
Sbjct: 176 WNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEM 235

Query: 238 RYSGYSPDEYTISIVINACTKLRN-----------------LDK---------------- 264
           R +G   +  T + +   C + RN                 LD                 
Sbjct: 236 RLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAI 295

Query: 265 --GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G  + A +++  F     V +A I ++S+C  L  +  LF+ +        N M+S Y
Sbjct: 296 KLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGY 355

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK-SGFDSN 380
                 E A  LF+ ML   I P   T++ +L     +  ++ G +FH   ++  GF+  
Sbjct: 356 THMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDY 415

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            ++ +SL+EMYA++G + S+  +F  L +RD V++ +++ G    G     L +F+E+++
Sbjct: 416 LLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIK 475

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + PD++T+ AVL AC++ G V +G ++F  M   YG++P  EH++C++DL  +AG L 
Sbjct: 476 HRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLN 535

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           KA  + ++MP++P  ++W +++ A  I+G+ ++ E  AE++++++  +P  Y L+   +A
Sbjct: 536 KAKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHA 595

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             GRW  +  V+  MR  G+ K  GC+W+ + +    F  G+   H    +Y +L  LT 
Sbjct: 596 AAGRWSKLAEVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTD 655

Query: 621 EMEDEGCV 628
            M+D G V
Sbjct: 656 LMKDAGYV 663


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 181/617 (29%), Positives = 313/617 (50%), Gaps = 48/617 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C  F+  +  + +H  + K  F ++ ++ N  +D+Y++ G              
Sbjct: 322 TSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGA------------- 368

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             L  A K F+ +   D +SWN++I GY        A  +F +M
Sbjct: 369 ------------------LKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRM 410

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            L G+ P      + L+++ SAC        G+Q H   ++ GL  +N+  G+SLIDMY 
Sbjct: 411 ILDGIVPD----EVSLASILSACGNIKVLEAGQQFHCLSVKLGLE-TNLFAGSSLIDMYS 465

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A   + +M E  ++S N+LI+G       E +++  + M+  G  P E T + 
Sbjct: 466 KCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKE-SINLLHEMQILGLKPSEITFAS 524

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRW 310
           +I+ C     +  G Q+    VK G L  S  L ++ + ++    RL D+  LF +    
Sbjct: 525 LIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSL 584

Query: 311 DYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQF 368
              V+   +IS + +    +VAL L++ M   +I P + T   VL +  +    H G + 
Sbjct: 585 KSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREI 644

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGR 427
           HS+   +GFD + + +S+L++MYAK G + SS ++F +L  K+D++SWN++++G  +NG 
Sbjct: 645 HSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGY 704

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
           A   L VF+E+ +  + PD +T   VL AC++ G+V +G  +F  M   YG+ P  +HYA
Sbjct: 705 AKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYA 764

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C++DLL + G L +A +    +  +P   IW ++L A  I+GD K  +  A+++++L+  
Sbjct: 765 CMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQ 824

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           S  PY LL+  YA  G W+    +++ M K  I K+ GCSWI +      F AG++ H  
Sbjct: 825 SSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWIVVGQETNLFVAGDISHSS 884

Query: 608 GQKIYLVLRLLTWEMED 624
             +I   L+ LT  ++D
Sbjct: 885 YDEISKALKHLTALIKD 901



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 233/447 (52%), Gaps = 16/447 (3%)

Query: 49  HTYLGNRCLDLYSRFGTSDDVLQLFDE-----IPQKNCISWNICLRGLLKSDNLDTALKV 103
           HT      +  Y + G   + L +FD+     +P +  ++    L   +    LD A ++
Sbjct: 114 HTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQ--VALVTVLNAYISLGKLDDACQL 171

Query: 104 FDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           F ++P P  +VV+WN MISG+A   + + AL  F +M   GV+ S  T + +LS ++S  
Sbjct: 172 FQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLA 231

Query: 162 ---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
              HG  +H   I+ G   S++ + +SLI+MYGK  +   A  VF  + + ++I WN+++
Sbjct: 232 ALNHGLLVHAHAIKQGFE-SSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAML 290

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
                +G+    ++ F  M   G  PDE+T + +++ C     L+ G+Q+ +  +K  F 
Sbjct: 291 GVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFT 350

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           SN  V +A ID+++K   L+++ + FE +   D+   N +I  Y +      A  LF+ M
Sbjct: 351 SNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRM 410

Query: 339 LREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           + + I P E +L+ +LS+   I  +E G QFH +++K G ++N    SSL++MY+K G I
Sbjct: 411 ILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDI 470

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             + + +  + +R +VS N ++ G        E++++  E+   GL P  IT A+++  C
Sbjct: 471 KDAHKTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLKPSEITFASLIDVC 529

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEE 484
                V  G+ +  A+ +  G++ G E
Sbjct: 530 KGSAKVILGLQIHCAIVKR-GLLCGSE 555



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/541 (24%), Positives = 245/541 (45%), Gaps = 44/541 (8%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H  K+S S  + ++    S  + +    +H H  K GF +  Y+ +  +++Y +    DD
Sbjct: 211 HGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDD 270

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
                                          A +VFD I + +++ WN+M+  Y+  G+ 
Sbjct: 271 -------------------------------ARQVFDAISQKNMIVWNAMLGVYSQNGFL 299

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLG 183
              +E+F  M   G+ P  FT++ +LST   AC      G+Q+H ++I+   + SN+ + 
Sbjct: 300 SNVMELFLDMISCGIHPDEFTYTSILSTC--ACFEYLEVGRQLHSAIIKKRFT-SNLFVN 356

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N+LIDMY K G L  A   F +M   D ISWN++I G         A   F  M   G  
Sbjct: 357 NALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIV 416

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PDE +++ +++AC  ++ L+ G+Q   LSVK+G  +N    S+ ID++SKC  ++D+ + 
Sbjct: 417 PDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKT 476

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPV 362
           +  +       +N +I+ Y      E ++ L   M    ++P+E T + ++        V
Sbjct: 477 YSSMPERSVVSVNALIAGYALKNTKE-SINLLHEMQILGLKPSEITFASLIDVCKGSAKV 535

Query: 363 EHGSQFHSMAIKSGFDSNA-VVASSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMM 420
             G Q H   +K G    +  + +SL+ MY  +  +  +  +F +    + +V W  ++ 
Sbjct: 536 ILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALIS 595

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  QN  +   L+++ E+ +  + PD+ T   VL AC     +  G  + S +    G  
Sbjct: 596 GHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHT-GFD 654

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
             E   + ++D+  + G +  ++ +   +  +     W S++   A  G  K    V + 
Sbjct: 655 LDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDE 714

Query: 541 M 541
           M
Sbjct: 715 M 715



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/469 (28%), Positives = 223/469 (47%), Gaps = 43/469 (9%)

Query: 93  KSDNLDTALKVFDEIPEPDV--VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           K ++L  A  +F   P P +  VSW ++ISGY   G    AL +F KM     R S    
Sbjct: 94  KCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKM-----RNSAVPD 148

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM--EE 208
            + L TV                             ++ Y  LG L  A  +F  M    
Sbjct: 149 QVALVTV-----------------------------LNAYISLGKLDDACQLFQQMPIPI 179

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            ++++WN +ISG   + + E AL  F+ M   G      T++ V++A   L  L+ G  V
Sbjct: 180 RNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLV 239

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A ++K GF S+  V S+ I+++ KC   +D+ ++F+ + + +  V N M+  Y + GF 
Sbjct: 240 HAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFL 299

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
              +ELF  M+   I P EFT + +LS+      +E G Q HS  IK  F SN  V ++L
Sbjct: 300 SNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNAL 359

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G++  + + F  +  RD +SWN I++G  Q    A    +F  ++ +G+ PD 
Sbjct: 360 IDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDE 419

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           ++LA++L AC     ++ G   F  +  + G+       + +ID+  + G +  A    S
Sbjct: 420 VSLASILSACGNIKVLEAGQQ-FHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYS 478

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLL 555
           +MP +   S+  + L A     + K + N+   M  L L PS + ++ L
Sbjct: 479 SMPERSVVSV--NALIAGYALKNTKESINLLHEMQILGLKPSEITFASL 525



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 166/386 (43%), Gaps = 77/386 (19%)

Query: 209 LDIISWNSLISGCFNSGYGELALDQFY-SMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           L +  WN  + G     Y    + QFY S   SG+SPD++T ++ ++AC KL+NL  G+ 
Sbjct: 11  LRVRQWNWRVQG--TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRA 68

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRY 325
           V +  +K G  S S    A I L++KCN L  +  +F          ++   +IS Y + 
Sbjct: 69  VHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQA 128

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSS----------------IPIP--------- 360
           G    AL +F  M R    P +  L  VL++                +PIP         
Sbjct: 129 GLPHEALHIFDKM-RNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNV 187

Query: 361 ------PVEHGSQ----FHSMA----------------------------------IKSG 376
                    H  +    FH M+                                  IK G
Sbjct: 188 MISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQG 247

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+S+  VASSL+ MY K    D + ++F  + +++++ WN ++   +QNG  +  +++F 
Sbjct: 248 FESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFL 307

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           +++  G+ PD  T  ++L  C    +++ G  + SA+ ++        + A +ID+  +A
Sbjct: 308 DMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNA-LIDMYAKA 366

Query: 497 GQLGKAIDITSTMPFQPGCSIWESIL 522
           G L +A      M ++   S W +I+
Sbjct: 367 GALKEAGKHFEHMTYRDHIS-WNAII 391


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 174/541 (32%), Positives = 283/541 (52%), Gaps = 6/541 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV-RPSGFTFS 151
           K+  L  A K+FDE+P  D VSWN MISG+   G  D     F +MQ  G  R    T +
Sbjct: 4   KNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLT 63

Query: 152 ILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +LS       G   K +H   + +G     + +GN+LI  Y K G       VF  M E
Sbjct: 64  TILSACDRPELGFVNKMVHCLAVLNGFQ-REISVGNALITSYFKCGFSSSGMQVFDEMLE 122

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            ++I+W ++ISG   S     +L  F  M      P+  T    + AC+ L+ L +G Q+
Sbjct: 123 RNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQI 182

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
                K+G  S+  V SA +D++SKC  + D++++FE   + D   + ++++ + + GF 
Sbjct: 183 HGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFE 242

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E A++ F  ML          +S VL        +  G Q HS+ IK  F SN  V + L
Sbjct: 243 EEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGL 302

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MY+K G ++ ST++F ++   + VSWN+++    ++G  +  L +++E+  +G+ P  
Sbjct: 303 INMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTD 362

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T  ++L AC++ G V+KGM    +M E + + P  EHYAC++D+L +AG L +A     
Sbjct: 363 VTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIE 422

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            +P +P   +W+++L A  I+GD ++ +  AE ++      P PY LL   Y+ +GRW+ 
Sbjct: 423 GLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKE 482

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
             +  K M++  + K TG SWI I+N +++F   +  H   + IY VL  L   M DEG 
Sbjct: 483 RAKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDEGY 542

Query: 628 V 628
           V
Sbjct: 543 V 543



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 187/392 (47%), Gaps = 40/392 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H      GF     +GN  +  Y + G S   +Q+FDE+ ++N I+W   + GL++S
Sbjct: 79  KMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQS 138

Query: 95  DNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           +    +L++F E+     EP+ +++   +S   +C              LQ +R      
Sbjct: 139 ELYRDSLRLFVEMTNGLVEPNSLTY---LSSLMACS------------GLQALR------ 177

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
                       G QIHG + + GL  S+  + ++L+DMY K G +     +F +  +LD
Sbjct: 178 -----------EGCQIHGRVWKLGLQ-SDFCVESALMDMYSKCGSMGDTLQIFESAGQLD 225

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +S   +++G   +G+ E A+  F  M  +G   D   +S V+       +L  G+Q+ +
Sbjct: 226 KVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHS 285

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L +K  F SN  V +  I+++SKC  LEDS ++F ++   +    N MI+ + R+G G  
Sbjct: 286 LVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSR 345

Query: 331 ALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLM 388
           AL+L++ M  + + PT+ T LS + +   +  VE G +F  SM             + ++
Sbjct: 346 ALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVV 405

Query: 389 EMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +M  + G ++ +      L  K D++ W  ++
Sbjct: 406 DMLGRAGLLNEAKTFIEGLPIKPDVLVWQALL 437



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 159/345 (46%), Gaps = 6/345 (1%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEY 247
           MY K GVL  A  +F  M   D +SWN +ISG    G  ++    F  M+  G Y  D+ 
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T++ +++AC +       K V  L+V  GF     V +A I  + KC      +++F+++
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGS 366
              +      +IS   +      +L LF  M    + P   T LS +++   +  +  G 
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGC 180

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H    K G  S+  V S+LM+MY+K GS+  + +IF    + D VS   I+ G  QNG
Sbjct: 181 QIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNG 240

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEH 485
              E +  F ++LE G   D   ++AVL        +  G  + S  +K  +G  P   +
Sbjct: 241 FEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGN 300

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
              +I++  + G L  +  + S MP     S W S++ A A +GD
Sbjct: 301 --GLINMYSKCGDLEDSTKVFSRMPCMNSVS-WNSMIAAFARHGD 342



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 43/349 (12%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V   SL+Y S L+  C   ++      IHG ++KLG  +   + +  +D+YS+ G+  D 
Sbjct: 156 VEPNSLTYLSSLM-ACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDT 214

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
           LQ+F+   Q + +S  I L                               +G+A  G+ +
Sbjct: 215 LQIFESAGQLDKVSMTIIL-------------------------------AGFAQNGFEE 243

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            A++ F KM   G        S +L      +S   G+QIH  +I+     SN  +GN L
Sbjct: 244 EAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFG-SNPFVGNGL 302

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I+MY K G L  +  VF  M  ++ +SWNS+I+     G G  AL  +  MR  G  P +
Sbjct: 303 INMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTD 362

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFE 305
            T   +++AC+ +  ++KG +      +V  L+  +   A  +D+  +   L ++    E
Sbjct: 363 VTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIE 422

Query: 306 QLD-RWDYAVINVMISTYGRYG---FGEVALELFQLMLREDIRPTEFTL 350
            L  + D  V   ++   G +G    G+ A E   L+L    +P+ + L
Sbjct: 423 GLPIKPDVLVWQALLGACGIHGDPEMGKYAAE--HLILSAPEKPSPYIL 469


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 179/595 (30%), Positives = 302/595 (50%), Gaps = 38/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H  L KLGF + T L N  +D+Y++ G                                
Sbjct: 26  LHAALMKLGFGSDTMLNNNLIDMYAKCG-------------------------------K 54

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A +VFD +PE +VVSW +++ G+   G +   L +F +M+  G  P+ FT S  L  
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 114

Query: 157 VSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G QIHG  +R+G    +VV  NSL+ MY K      A  VF  +   ++ +WN
Sbjct: 115 CGGGTRAGVQIHGVCVRTGFEGHDVV-ANSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 173

Query: 216 SLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSV 273
           S+ISG  ++G G  +L  F  M R     PDE+T + ++ AC+ L    +G QV A ++V
Sbjct: 174 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 233

Query: 274 K-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           + V   SN+I+  A +D++ KC+RL  ++++F+ L+R +      +I  + + G  + A+
Sbjct: 234 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 293

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF+      +R     LS V++       VE G Q H    K+    +  VA+SL++MY
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 353

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G    +   F ++  R++VSW  ++ G+ ++G   E +D+FEE+  EG+  D +   
Sbjct: 354 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYL 413

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           A+L AC++ G VD+    FS + ++  + P  EHYAC++DLL +AG+L +A ++  +MP 
Sbjct: 414 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPM 473

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W+++L A  ++ DV +   V + ++ +   +P+ Y +L+   A  G W     +
Sbjct: 474 EPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGI 533

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTF-NAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  MR+ G+ K  GCSW  +   ++ F   G+  H     I   LR +   M + 
Sbjct: 534 RGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRER 588



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 193/384 (50%), Gaps = 11/384 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G Q+H ++++ G   S+ +L N+LIDMY K G L+ A  VF  M E +++SW +L+ G  
Sbjct: 23  GVQLHAALMKLGFG-SDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFL 81

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           + G     L  F  MR SG SP+E+T+S  + AC        G Q+  + V+ GF  + +
Sbjct: 82  HHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDV 139

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM-LRE 341
           V ++ + ++SK     D+ R+F+ +   + A  N MIS Y   G G  +L +F+ M  R 
Sbjct: 140 VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 199

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD--SNAVVASSLMEMYAKTGSID 398
           D +P EFT + +L +   +     G+Q H+     G    SNA++A +L+++Y K   + 
Sbjct: 200 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLP 259

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + ++F  L++R+ + W T+++G  Q G+  E + +F      G+  D   L++V+    
Sbjct: 260 VAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFA 319

Query: 459 YGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
               V++G  V     K   G+     +   ++D+  + G  G+A      MP +   S 
Sbjct: 320 DFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGEAGRRFREMPARNVVS- 376

Query: 518 WESILRASAIYGDVKLTENVAERM 541
           W +++     +G  +   ++ E M
Sbjct: 377 WTAMINGVGKHGHGREAIDLFEEM 400



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 140/287 (48%), Gaps = 6/287 (2%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           I+ ++ A  +  +L  G Q+ A  +K+GF S++++ +  ID+++KC +L  +  +F+ + 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF 368
             +      ++  +  +G     L LF  M      P EFTLS  L +        G Q 
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG-GGTRAGVQI 125

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H + +++GF+ + VVA+SL+ MY+K      +  +F  +  R+L +WN+++ G    G+ 
Sbjct: 126 HGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQG 185

Query: 429 AETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY- 486
            ++L VF E+       PD  T A++L AC+  G   +G  V +AM    GV P      
Sbjct: 186 RDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVR-GVSPASNAIL 244

Query: 487 -ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
              ++D+  +  +L  A+ +   +  +     W +++   A  G VK
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQ-WTTVIVGHAQEGQVK 290



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 39/200 (19%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F   +  K +H +  K        + N  +D+Y + G + +  + F E+P +N +SW   
Sbjct: 321 FALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 380

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQG 142
           + G+ K  +   A+ +F+E+     E D V++ +++S  +  G  D     FS++ Q + 
Sbjct: 381 INGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 440

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           +RP    +         AC                        ++D+ G+ G L  A  +
Sbjct: 441 MRPKAEHY---------AC------------------------MVDLLGRAGELREAKEL 467

Query: 203 FLNME-ELDIISWNSLISGC 221
            L+M  E  +  W +L+S C
Sbjct: 468 ILSMPMEPTVGVWQTLLSAC 487


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 305/611 (49%), Gaps = 46/611 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    +  + +H H  K  F++   +G   +D+Y+                       
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYA----------------------- 296

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K+++L  A + F  +P   V + N+M+ G    G    A+ +F  M    +R
Sbjct: 297 --------KANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIR 348

Query: 145 PSGFTFSIL-LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                F ++ LS V SAC        G+Q+H   I+SG  + ++ + N+++D+YGK   L
Sbjct: 349 -----FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV-DICVNNAVLDLYGKCKAL 402

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A+ +F  M++ D +SWN++I+    +G+ +  +  F  M   G  PD++T   V+ AC
Sbjct: 403 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 462

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             LR+L+ G  V    +K G  S++ V S  +D++ KC  ++++ +L +++        N
Sbjct: 463 AALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWN 522

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            ++S +      E A + F  ML   ++P  FT + VL +   +  +E G Q H   IK 
Sbjct: 523 AILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ 582

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
               +  ++S+L++MYAK G +  S  +F K++KRD VSWN ++ G   +G   E L +F
Sbjct: 583 EMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMF 642

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E + +E + P+  T  AVL AC++ G  D G   F  M   Y + P  EH+AC++D+L +
Sbjct: 643 ERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGR 702

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           +    +A+   ++MPFQ    IW+++L    I  DV++ E  A  ++ L       Y LL
Sbjct: 703 SKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILL 762

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  G+W  + R ++++++  + K  GCSWI +++ ++ F  G+  H    ++Y +L
Sbjct: 763 SNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEML 822

Query: 616 RLLTWEMEDEG 626
             L  EM+  G
Sbjct: 823 NDLIGEMKLSG 833



 Score =  251 bits (642), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 269/506 (53%), Gaps = 7/506 (1%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
           GF  + ++ N  L +Y+R   +    ++FD +P+++ +SWN  L     + ++ TA+ +F
Sbjct: 47  GFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-- 162
           D +P+PDVVSWN+++SGY   G    ++++F +M  +GV P   TF++LL + S+     
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 163 -GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H   +++GL + +V  G++L+DMYGK   L  A   F  M E + +SW + I+GC
Sbjct: 167 LGVQVHALAVKTGLEI-DVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGC 225

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +      L+ F  M+  G    + + +    +C  +  L+ G+Q+ A ++K  F S+ 
Sbjct: 226 VQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDR 285

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           +V +A +D+++K N L D+ R F  L        N M+    R G G  A+ LFQ M+R 
Sbjct: 286 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 345

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            IR    +LS V S+         G Q H +AIKSGFD +  V ++++++Y K  ++  +
Sbjct: 346 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEA 405

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             IF  + ++D VSWN I+  L QNG   +T+  F E+L  G+ PD  T  +VL AC   
Sbjct: 406 YLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL 465

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             ++ G++V   + +  G+       + ++D+ C+ G + +A  +   +  Q   S W +
Sbjct: 466 RSLEYGLMVHDKVIKS-GLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNA 523

Query: 521 ILRASAIYGDVKLTENVAERMMDLQL 546
           IL   ++  + +  +     M+D+ L
Sbjct: 524 ILSGFSLNKESEEAQKFFSEMLDMGL 549



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 244/512 (47%), Gaps = 36/512 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C + +       +H    K G       G+  +D+Y +  + DD L  F  +P++N
Sbjct: 155 LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERN 214

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQ 139
            +SW   + G ++++     L++F E+    + VS  S  S + SC              
Sbjct: 215 WVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC-------------- 260

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
                          + +S    G+Q+H   I++  S S+ V+G +++D+Y K   L  A
Sbjct: 261 ---------------AAMSCLNTGRQLHAHAIKNKFS-SDRVVGTAIVDVYAKANSLTDA 304

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
              F  +    + + N+++ G   +G G  A+  F  M  S    D  ++S V +AC + 
Sbjct: 305 RRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 364

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           +   +G+QV  L++K GF  +  V +A +DL+ KC  L ++  +F+ + + D    N +I
Sbjct: 365 KGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAII 424

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFD 378
           +   + G  +  +  F  MLR  ++P +FT   VL +   +  +E+G   H   IKSG  
Sbjct: 425 AALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG 484

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+A VAS++++MY K G ID + ++  ++  + +VSWN I+ G + N  + E    F E+
Sbjct: 485 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 544

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYACIIDLLCQAG 497
           L+ GL PD  T A VL  C     ++ G  +    +K+E  ++  E   + ++D+  + G
Sbjct: 545 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEYISSTLVDMYAKCG 602

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            +  ++ +   +  +   S W +++   A++G
Sbjct: 603 DMPDSLLVFEKVEKRDFVS-WNAMICGYALHG 633



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 161/341 (47%), Gaps = 35/341 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K +   + +H    K GF+    + N  LDLY +     +   +F  + Q
Sbjct: 355 SGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQ 414

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N++I+     G+ D  +  F++M
Sbjct: 415 KDSVSW-------------------------------NAIIAALEQNGHYDDTILHFNEM 443

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  FT+  +L   + + S  +G  +H  +I+SGL  S+  + ++++DMY K G+
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG-SDAFVASTVVDMYCKCGI 502

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +   +    ++SWN+++SG   +   E A   F  M   G  PD +T + V++ 
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  ++ GKQ+    +K   L +  + S  +D+++KC  + DS+ +FE++++ D+   
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  Y  +G G  AL +F+ M +E++ P   T   VL +
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRA 663



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 108/249 (43%), Gaps = 34/249 (13%)

Query: 243 SPDEYTISIVINACTKL-RNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDS 300
           +P   T S V  +C +  R      +     + V GF+ N+ V +  + ++++C     +
Sbjct: 12  APARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACA 71

Query: 301 VRLFEQLDRWDYAVINVMISTYG-------------------------------RYGFGE 329
            R+F+ + R D    N M++ Y                                + G  +
Sbjct: 72  RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 131

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            +++LF  M R  + P   T + +L S   +  +  G Q H++A+K+G + +    S+L+
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 191

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K  S+D +   F  + +R+ VSW   + G  QN +    L++F E+   GL   + 
Sbjct: 192 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251

Query: 449 TLAAVLLAC 457
           + A+   +C
Sbjct: 252 SYASAFRSC 260



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 31/117 (26%)

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM------------ 420
           + SGF  NA V++ L++MYA+      +  +F  + +RD VSWNT++             
Sbjct: 44  VVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 421 -------------------GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                              G  Q G   E++D+F E+   G+ PDR T A +L +C+
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 160


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 161/530 (30%), Positives = 279/530 (52%), Gaps = 25/530 (4%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           ++ L     L  A  VFDE+P+ DVV+W +M+SGYAS G   YAL++F +M   GV P+ 
Sbjct: 10  IKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNE 69

Query: 148 FTFSILLST-----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK----LGV--- 195
           FT S +L+          C    +H   +R G+     V+ N+LI+ Y      +GV   
Sbjct: 70  FTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVV-NALIEAYASCEEGVGVEES 128

Query: 196 --LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
             L+ A G           SW S+++G    G  +  L  F +M   G     +T SI +
Sbjct: 129 RKLFDALG-----SGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIAL 183

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +AC  + NL  G+Q+  L ++  F +N  V ++ ID++  C  L D+ RLF+++   +  
Sbjct: 184 HACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLV 243

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
             N MI+ Y +       L   QL+   +++P  FTL+ + S+   +  +  G Q H  A
Sbjct: 244 TWNTMIAWYSQCNH----LMALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAA 299

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           ++  +  +  + ++L++MY+K GSI ++ ++F  +D +D +SW +++ G   NG A E++
Sbjct: 300 LRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESI 359

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +F  ++  G+ PD +    ++ ACN+GG VD+G   F +M  EY + P +E Y C+ +L
Sbjct: 360 QLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNL 419

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG+L +A D+   MPF P  ++W ++L A  ++ +V+L    A +++++       Y
Sbjct: 420 LARAGRLREAFDLIHRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTY 479

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
            LL   YA   +W      ++++R  G  K  G SWI + ++IY+F   +
Sbjct: 480 VLLANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKIYSFTTAD 529



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 48/298 (16%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS  +  C S  +    + +H    +  FNA+  + N  +D+Y       D  +LFDEIP
Sbjct: 179 CSIALHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIP 238

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           ++N                               +V+WN+MI+ Y+ C +   AL++  +
Sbjct: 239 ERN-------------------------------LVTWNTMIAWYSQCNHL-MALQLLRE 266

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           M LQ   P+ FT    L++++SAC        G+Q+HG+ +R      ++ + N+L+DMY
Sbjct: 267 MNLQ---PNCFT----LTSITSACAGLASLRFGQQVHGAALRRNYG-KDLQMCNALVDMY 318

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  +F  M+  D +SW S+I+G   +GY   ++  F SM ++G  PD     
Sbjct: 319 SKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFL 378

Query: 251 IVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +I AC     +D+G   F +++ +     N  +     +L ++  RL ++  L  ++
Sbjct: 379 GLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRM 436



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           A++L++     G++  +  +F ++  RD+V+W  ++ G   NG  +  LD+F  +L  G+
Sbjct: 6   ATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGV 65

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            P+  TL++VL AC  GG  D G    S       V  G +H   +++ L +A
Sbjct: 66  GPNEFTLSSVLTACR-GGAADGGCEPSSL--HAVAVRRGVDHMPYVVNALIEA 115


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 173/554 (31%), Positives = 289/554 (52%), Gaps = 36/554 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           D L  A  VF+ I EP+ + WN+MI G+A       +L ++  M   G+ P+ +TF  LL
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLL 71

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLS------------------------------NVV 181
            + + +     G+QIHG +++ G  L                               +VV
Sbjct: 72  KSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVV 131

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
              +LI  Y   G +  A  +F  +   D++SWN++ISG   +G  + AL+ F  M    
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN 191

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE T   V++AC    +++ G+QV +     GF SN  +++A IDL+SKC  +E + 
Sbjct: 192 VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LF+ L   D    N +I  Y      + AL LFQ MLR    P + T+  VL +   + 
Sbjct: 252 GLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLG 311

Query: 361 PVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  + L SWN +
Sbjct: 312 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM 371

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GRA  + D+F  + + G+ PD IT   +L AC++ G +D G  +F +M ++Y 
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYK 431

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + P  EHY C+IDLL  +G   +A ++ +TM  +P   IW S+L+A  ++G+V+L E+ A
Sbjct: 432 MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFA 491

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           + ++ ++  +P  Y LL+  YA  GRWE + R++ ++    + KV GCS I + + ++ F
Sbjct: 492 QNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEF 551

Query: 599 NAGELQHHGGQKIY 612
             G+  H   ++IY
Sbjct: 552 VVGDKFHPQNREIY 565



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 180/341 (52%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+F   + IHG + KLGF+   Y+    + +Y +    +D  ++FD    ++
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G     ++ +A K+FDEIP  DVVSWN+MISGYA  G    ALE+F +M  
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             VRP   T+  +LS  + +     G+Q+H  +   G   SN+ + N+LID+Y K G + 
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFD-SNLKIVNALIDLYSKCGEVE 248

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG +P++ T+  V+ AC 
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 258 KLRNLDKGKQVFALSVK--VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  +D G+ +     K   G  + S + ++ ID+++KC  +E + ++F  +     +  
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 368

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G  + + +LF  M +  I P + T   +LS+
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSA 409



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ +    + SWN+MI G+A  G +D + ++FS+M+  G+ P   TF  
Sbjct: 346 KCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVG 405

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           LLS  S +     G+ I  SM +       +     +ID+ G  G+   A  +   ME E
Sbjct: 406 LLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 465

Query: 209 LDIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  ELA
Sbjct: 466 PDGVIWCSLLKACKMHGNVELA 487


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 305/611 (49%), Gaps = 46/611 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    +  + +H H  K  F++   +G   +D+Y+                       
Sbjct: 260 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYA----------------------- 296

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K+++L  A + F  +P   V + N+M+ G    G    A+ +F  M    +R
Sbjct: 297 --------KANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIR 348

Query: 145 PSGFTFSIL-LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                F ++ LS V SAC        G+Q+H   I+SG  + ++ + N+++D+YGK   L
Sbjct: 349 -----FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV-DICVNNAVLDLYGKCKAL 402

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A+ +F  M++ D +SWN++I+    +G+ +  +  F  M   G  PD++T   V+ AC
Sbjct: 403 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 462

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             LR+L+ G  V    +K G  S++ V S  +D++ KC  ++++ +L +++        N
Sbjct: 463 AALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWN 522

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            ++S +      E A + F  ML   ++P  FT + VL +   +  +E G Q H   IK 
Sbjct: 523 AILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ 582

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
               +  ++S+L++MYAK G +  S  +F K++KRD VSWN ++ G   +G   E L +F
Sbjct: 583 EMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMF 642

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E + +E + P+  T  AVL AC++ G  D G   F  M   Y + P  EH+AC++D+L +
Sbjct: 643 ERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGR 702

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           +    +A+   ++MPFQ    IW+++L    I  DV++ E  A  ++ L       Y LL
Sbjct: 703 SKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILL 762

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  G+W  + R ++++++  + K  GCSWI +++ ++ F  G+  H    ++Y +L
Sbjct: 763 SNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEML 822

Query: 616 RLLTWEMEDEG 626
             L  EM+  G
Sbjct: 823 NDLIGEMKLSG 833



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 268/506 (52%), Gaps = 7/506 (1%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
           GF    ++ N  L +Y+R   +    ++FD +P+++ +SWN  L     + ++ TA+ +F
Sbjct: 47  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-- 162
           D +P+PDVVSWN+++SGY   G    ++++F +M  +GV P   TF++LL + S+     
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 163 -GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H   +++GL + +V  G++L+DMYGK   L  A   F  M E + +SW + I+GC
Sbjct: 167 LGVQVHALAVKTGLEI-DVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGC 225

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +      L+ F  M+  G    + + +    +C  +  L+ G+Q+ A ++K  F S+ 
Sbjct: 226 VQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDR 285

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           +V +A +D+++K N L D+ R F  L        N M+    R G G  A+ LFQ M+R 
Sbjct: 286 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 345

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            IR    +LS V S+         G Q H +AIKSGFD +  V ++++++Y K  ++  +
Sbjct: 346 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEA 405

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             IF  + ++D VSWN I+  L QNG   +T+  F E+L  G+ PD  T  +VL AC   
Sbjct: 406 YLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL 465

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             ++ G++V   + +  G+       + ++D+ C+ G + +A  +   +  Q   S W +
Sbjct: 466 RSLEYGLMVHDKVIKS-GLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNA 523

Query: 521 ILRASAIYGDVKLTENVAERMMDLQL 546
           IL   ++  + +  +     M+D+ L
Sbjct: 524 ILSGFSLNKESEEAQKFFSEMLDMGL 549



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 244/512 (47%), Gaps = 36/512 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C + +       +H    K G       G+  +D+Y +  + DD L  F  +P++N
Sbjct: 155 LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERN 214

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQ 139
            +SW   + G ++++     L++F E+    + VS  S  S + SC              
Sbjct: 215 WVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC-------------- 260

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
                          + +S    G+Q+H   I++  S S+ V+G +++D+Y K   L  A
Sbjct: 261 ---------------AAMSCLNTGRQLHAHAIKNKFS-SDRVVGTAIVDVYAKANSLTDA 304

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
              F  +    + + N+++ G   +G G  A+  F  M  S    D  ++S V +AC + 
Sbjct: 305 RRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 364

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           +   +G+QV  L++K GF  +  V +A +DL+ KC  L ++  +F+ + + D    N +I
Sbjct: 365 KGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAII 424

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFD 378
           +   + G  +  +  F  MLR  ++P +FT   VL +   +  +E+G   H   IKSG  
Sbjct: 425 AALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG 484

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+A VAS++++MY K G ID + ++  ++  + +VSWN I+ G + N  + E    F E+
Sbjct: 485 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 544

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYACIIDLLCQAG 497
           L+ GL PD  T A VL  C     ++ G  +    +K+E  ++  E   + ++D+  + G
Sbjct: 545 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEYISSTLVDMYAKCG 602

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            +  ++ +   +  +   S W +++   A++G
Sbjct: 603 DMPDSLLVFEKVEKRDFVS-WNAMICGYALHG 633



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 161/341 (47%), Gaps = 35/341 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K +   + +H    K GF+    + N  LDLY +     +   +F  + Q
Sbjct: 355 SGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQ 414

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N++I+     G+ D  +  F++M
Sbjct: 415 KDSVSW-------------------------------NAIIAALEQNGHYDDTILHFNEM 443

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  FT+  +L   + + S  +G  +H  +I+SGL  S+  + ++++DMY K G+
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG-SDAFVASTVVDMYCKCGI 502

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +   +    ++SWN+++SG   +   E A   F  M   G  PD +T + V++ 
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  ++ GKQ+    +K   L +  + S  +D+++KC  + DS+ +FE++++ D+   
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  Y  +G G  AL +F+ M +E++ P   T   VL +
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRA 663



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 34/249 (13%)

Query: 243 SPDEYTISIVINACTKL-RNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDS 300
           +P   T S V  +C +  R      +     + V GF+  + V +  + ++++C     +
Sbjct: 12  APARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACA 71

Query: 301 VRLFEQLDRWDYAVINVMISTYG-------------------------------RYGFGE 329
            R+F+ + R D    N M++ Y                                + G  +
Sbjct: 72  RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 131

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            +++LF  M R  + P   T + +L S   +  +  G Q H++A+K+G + +    S+L+
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 191

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K  S+D +   F  + +R+ VSW   + G  QN +    L++F E+   GL   + 
Sbjct: 192 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251

Query: 449 TLAAVLLAC 457
           + A+   +C
Sbjct: 252 SYASAFRSC 260



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM------------ 420
           + SGF   A V++ L++MYA+      +  +F  + +RD VSWNT++             
Sbjct: 44  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 421 -------------------GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                              G  Q G   E++D+F E+   G+ PDR T A +L +C+
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 160


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 173/585 (29%), Positives = 300/585 (51%), Gaps = 37/585 (6%)

Query: 57  LDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN 116
           +D+  R G  D   + F  I     I  N  L G  KS  +D AL++F  +PE DVVSWN
Sbjct: 201 VDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWN 260

Query: 117 SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRS 173
            +IS  +  G    AL+M   M  +GVRP   T++  L+    +SS   GKQ+H  +IR+
Sbjct: 261 MVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRN 320

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
            L   +  + ++++++Y K G    A  VF ++ + + +SW  LI G    G    +++ 
Sbjct: 321 -LPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVEL 379

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  MR    + D++ ++ +I+ C    ++  G Q+ +L +K G     +V ++ I +++K
Sbjct: 380 FNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAK 439

Query: 294 CNRLEDSVRLFEQLDRWD----------YAVI---------------------NVMISTY 322
           C  L+++  +F  +   D          Y+ +                     N M+  Y
Sbjct: 440 CGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAY 499

Query: 323 GRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
            ++G  E  L+++  ML E D+ P   T   +      I   + G Q     +K G   +
Sbjct: 500 IQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILD 559

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V ++++ MY+K G I  + + F  L ++DLVSWN ++ G +Q+G   + +++F+++L 
Sbjct: 560 TSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILN 619

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           +G  PD I+  AVL  C++ G V++G   F  MK ++ + PG EH++C++DLL +AG L 
Sbjct: 620 KGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLI 679

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A ++   MP +P   +W ++L A   +G+  L E  A+ + DL  P    Y LL + YA
Sbjct: 680 EAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYA 739

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             G+ +   +V+K+MR  GI K  G SW+ + NR++ F A ++ H
Sbjct: 740 DAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSH 784



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 238/493 (48%), Gaps = 40/493 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF-DEIPQKNCIS 83
           C +  +   A+T+H  L  +G  +  +L N  L  Y   G   D   L  DEI + N I+
Sbjct: 35  CGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVIT 94

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
            NI + G  K  +L  A+++F  +P  DV SWN+++SGY   G    AL++F  M+  G 
Sbjct: 95  HNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGD 154

Query: 144 R-PSGFTFSILLSTVSS-ACH--GKQIHG-------------------SMIRSG------ 174
             P+ FTF  ++ +  +   H    Q+ G                    ++R G      
Sbjct: 155 SLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFAS 214

Query: 175 -----LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
                +    ++  NS++  Y K   + +A  +F +M E D++SWN +IS    SG    
Sbjct: 215 KQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVRE 274

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           ALD    M   G  PD  T +  + AC +L +L+ GKQ+    ++     +  V SA ++
Sbjct: 275 ALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVE 334

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           L++KC   +++ R+F  L   +     V+I  + +YG    ++ELF  M  E +   +F 
Sbjct: 335 LYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFA 394

Query: 350 LSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L+ ++S       +  GSQ HS+ +KSG     VV++SL+ MYAK G++ ++  IF  + 
Sbjct: 395 LATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMA 454

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +RD+VSW  ++   +Q G  A+  + F+++    +    IT  A+L A    G  + G+ 
Sbjct: 455 ERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQHGAEEDGLK 510

Query: 469 VFSAMKEEYGVMP 481
           ++S M  E  V+P
Sbjct: 511 MYSDMLTEKDVIP 523



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 163/381 (42%), Gaps = 68/381 (17%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V   S +Y S L   C    S ++ K +H  + +   +   Y+ +  ++LY++ G   + 
Sbjct: 287 VRPDSTTYTSSLT-ACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEA 345

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
            ++F  +  +N +SW +                               +I G+   G   
Sbjct: 346 KRVFSSLRDRNSVSWTV-------------------------------LIGGFLQYGCFS 374

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSL 186
            ++E+F++M+ + +    F  + L+S   +    C G Q+H   ++SG + + VV+ NSL
Sbjct: 375 ESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRA-VVVSNSL 433

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG----- 241
           I MY K G L  A  +F  M E DI+SW  +I+     G    A + F  M         
Sbjct: 434 ISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWN 493

Query: 242 ------------------YS---------PDEYTISIVINACTKLRNLDKGKQVFALSVK 274
                             YS         PD  T   +   C  +     G Q+   +VK
Sbjct: 494 AMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVK 553

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           VG + ++ V++A I ++SKC R+ ++ + F+ L R D    N MI+ Y ++G G+ A+E+
Sbjct: 554 VGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEI 613

Query: 335 FQLMLREDIRPTEFTLSCVLS 355
           F  +L +  +P   +   VLS
Sbjct: 614 FDDILNKGAKPDYISYVAVLS 634



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 156/333 (46%), Gaps = 18/333 (5%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S C   +D CL          +H    K G      + N  + +Y++ G   +   +F+
Sbjct: 399 ISGCCNTMDICL-------GSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFN 451

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            + +++ +SW   +    +  N+  A + FD++   +V++WN+M+  Y   G  +  L+M
Sbjct: 452 FMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKM 511

Query: 135 FSKMQLQ-GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +S M  +  V P   T+  L    + + +   G QI G  ++ GL L   V+ N++I MY
Sbjct: 512 YSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVV-NAVITMY 570

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A   F  +   D++SWN++I+G    G G+ A++ F  +   G  PD  +  
Sbjct: 571 SKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYV 630

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDR 309
            V++ C+    +++GK  F +  +   +S  +   S  +DL  +   L ++  L +++  
Sbjct: 631 AVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPM 690

Query: 310 WDYA-VINVMIS---TYGRYGFGEVALE-LFQL 337
              A V   ++S   T+G     E+A + LF L
Sbjct: 691 KPTAEVWGALLSACKTHGNNDLAELAAKHLFDL 723



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           + N +  + +M  YAK GS+  + E+F ++  RD+ SWNTIM G  Q+G+    LD+F  
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 438 LLEEGLP-PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           + + G   P+  T   V+ +C   G+ +  + +   +  ++      +    ++D+L + 
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLL-SKFDSQDDPDVQTALVDMLVRC 207

Query: 497 GQL 499
           G +
Sbjct: 208 GAM 210


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 161/450 (35%), Positives = 258/450 (57%), Gaps = 3/450 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +HG +I+S +   ++V+ N+L++MY K G L  A  VF  M E D ++W +LISG  
Sbjct: 70  GRIVHGHLIQS-IFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYS 128

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
                  AL  F  M   G+SP+E+T+S VI A    R    G Q+    VK GF SN  
Sbjct: 129 QHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVH 188

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V SA +DL+++   ++D+  +F+ L+  +    N +I+ + R    E ALELFQ MLRE 
Sbjct: 189 VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREG 248

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            RP+ F+ + +  +      +E G   H+  IKSG    A   ++L++MYAK+GSI  + 
Sbjct: 249 FRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDAR 308

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           +IF +L KRD+VSWN+++    Q+G   E +  FEE+   G+ P+ I+  +VL AC++ G
Sbjct: 309 KIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSG 368

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   +  MK++ G++    HY  I+DLL +AG L +A+     MP +P  +IW+++
Sbjct: 369 LLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKAL 427

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ + +L    AE + +L    P P+ +L   YA  GRW    RV+K M+++G+ 
Sbjct: 428 LNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVK 487

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           K   CSW+ I+N I+ F A + +H   ++I
Sbjct: 488 KEPACSWVEIENAIHMFVANDERHPQREEI 517



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 194/388 (50%), Gaps = 36/388 (9%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + + L+ +C  FK     + +HGHL +  F     + N  L++Y++ G+           
Sbjct: 53  FYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGS----------- 101

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                               L+ A KVFD++PE D V+W ++ISGY+       AL +F+
Sbjct: 102 --------------------LEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFN 141

Query: 137 KMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M   G  P+ FT S ++   ++    C G Q+HG  ++ G   SNV +G++L+D+Y + 
Sbjct: 142 QMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD-SNVHVGSALLDLYTRY 200

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G++  A  VF  +E  + +SWN+LI+G       E AL+ F  M   G+ P  ++ + + 
Sbjct: 201 GLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLF 260

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC+    L++GK V A  +K G    +   +  +D+++K   + D+ ++F++L + D  
Sbjct: 261 GACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVV 320

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
             N +++ Y ++GFG  A+  F+ M R  IRP E +   VL++      ++ G  ++ + 
Sbjct: 321 SWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELM 380

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            K G    A    +++++  + G ++ +
Sbjct: 381 KKDGIVLEAWHYVTIVDLLGRAGDLNRA 408



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 18/297 (6%)

Query: 242 YSP-DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           Y P D    + ++  CT  + L +G+ V    ++  F  + ++ +  +++++KC  LE++
Sbjct: 46  YIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEA 105

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
            ++F+++   D+     +IS Y ++     AL LF  MLR    P EFTLS V   I   
Sbjct: 106 RKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSV---IKAA 162

Query: 361 PVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             E     G Q H   +K GFDSN  V S+L+++Y + G +D +  +F  L+ R+ VSWN
Sbjct: 163 AAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWN 222

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  +     + L++F+ +L EG  P   + A++  AC+  GF+++G  V +     
Sbjct: 223 ALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHA----- 277

Query: 477 YGVMPGEEHYA----CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           Y +  GE+  A     ++D+  ++G +  A  I   +  +   S W S+L A A +G
Sbjct: 278 YMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQHG 333



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 45/248 (18%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           +  SY S L   C S    +  K +H ++ K G     + GN  LD+Y++ G+  D  ++
Sbjct: 252 SHFSYAS-LFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKI 310

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD + +++ +S                               WNS+++ YA  G+ + A+
Sbjct: 311 FDRLAKRDVVS-------------------------------WNSLLTAYAQHGFGNEAV 339

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
             F +M+  G+RP+  +F  +L+  S +     G   +  M + G+ L       +++D+
Sbjct: 340 CWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHY-VTIVDL 398

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSPD 245
            G+ G L  A      M  E     W +L++ C    N+  G  A +  + +      PD
Sbjct: 399 LGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFEL-----DPD 453

Query: 246 EYTISIVI 253
           +    +++
Sbjct: 454 DPGPHVIL 461


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/572 (29%), Positives = 302/572 (52%), Gaps = 48/572 (8%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y++     +  +LFDE+  KN +SWN  L G  K+  +   L+ F+ + E +VVSWN M+
Sbjct: 150 YAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMV 209

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
            GY   G  D A   F K+      P+  ++  +LS    A +G+      + + +   N
Sbjct: 210 DGYVGVGDLDSAWMFFKKIPT----PNVVSWVTMLSGF--AHYGRMTEARNLFNEMPTKN 263

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           +V  N++I  Y +   +  A+ +F+ M E D +SW ++I+G    G    A +    M Y
Sbjct: 264 LVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPY 323

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLE 298
              +      + +IN   +   +D+  ++F+ +SV+     +S+  ++ I  ++ C R +
Sbjct: 324 KNIAAQ----TAMINGYLQSGRMDEANEIFSQISVR-----DSVCWNSMITGYAHCGRTD 374

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ---------------------- 336
           +++RLF+++   D    N MI+ Y + G  + ALE+F                       
Sbjct: 375 EALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGL 434

Query: 337 ---------LMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
                    LM ++  +P + T+ C L +S  +  +  G Q H + IK+GF ++  V ++
Sbjct: 435 YFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNA 494

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           ++ MYAK+G +  +  +F ++  +D+VSWN+++ G   NG   E +++FE +   G+ PD
Sbjct: 495 ILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPD 554

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T   +L ACN+GGFVD+G+ +F +M E Y + P  EHYAC+I+LL + G+L +A++I 
Sbjct: 555 EVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIV 614

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             M       IW ++L A  I+ +++L +  AER++ L+  +   Y LL+  +A  GRW+
Sbjct: 615 QGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWD 674

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
            + RV+ +M++N   K  GCSWI I N+++ F
Sbjct: 675 MVERVRVLMKENKAEKQPGCSWIEIDNQLHCF 706



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/548 (22%), Positives = 238/548 (43%), Gaps = 55/548 (10%)

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           N  TY  N  +  Y++ G   +  +LFD +PQ+N +SWN  + G L ++ ++ A ++FD 
Sbjct: 45  NIVTY--NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
           + + D+ SW  MI+ Y   G  + A E+               F++L     + C    I
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKAREL---------------FNLLPDKQDTVCRNALI 147

Query: 167 HG----SMIRSGLSL------SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
            G     + R    L       NVV  NS++  Y K G +      F  M E +++SWN 
Sbjct: 148 AGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNL 207

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKV 275
           ++ G    G G+  LD  +       +P+  +   +++       + + + +F  +  K 
Sbjct: 208 MVDGYV--GVGD--LDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK- 262

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
               N +  +A I  + + N+++D+ +LF ++   D      MI+ Y R G    A E+ 
Sbjct: 263 ----NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            LM  ++I      ++  L S  +   E    F  ++++     ++V  +S++  YA  G
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMD--EANEIFSQISVR-----DSVCWNSMITGYAHCG 371

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
             D +  +F ++  +D+VSWNT++    Q G+  + L++F E+ E  +    ++  +++ 
Sbjct: 372 RTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV----VSWNSLIT 427

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID---ITSTMPFQ 512
                G   + +  F  MK++ G  P +    C +        L   +    +T    F 
Sbjct: 428 GYVQNGLYFEALNCFILMKQQ-GEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFG 486

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
               +  +IL   A  G V   ENV     +++    + ++ L   YA+ G  +  V + 
Sbjct: 487 NDLFVKNAILTMYAKSGRVPEAENV---FAEIKNKDVVSWNSLIAGYALNGCGKEAVELF 543

Query: 573 KVMRKNGI 580
           +VM   GI
Sbjct: 544 EVMPLRGI 551



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           +  + +    +H    K GF    ++ N  L +Y++ G   +   +F EI  K+ +SW  
Sbjct: 466 NLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSW-- 523

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                                        NS+I+GYA  G    A+E+F  M L+G+ P 
Sbjct: 524 -----------------------------NSLIAGYALNGCGKEAVELFEVMPLRGIIPD 554

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGV 195
             TF+ LL    SAC+    HG  +  GL+L   +               +I++ G++G 
Sbjct: 555 EVTFTGLL----SACN----HGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGR 606

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGC 221
           L  A  +   M+ +     W +L+  C
Sbjct: 607 LEEAVEIVQGMKTVSSAKIWGALLWAC 633


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 166/603 (27%), Positives = 311/603 (51%), Gaps = 42/603 (6%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D  + +H    K G  +  ++ N  +++Y++ G  +D                     
Sbjct: 216 ALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED--------------------- 254

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                     A  VF+ +   D+VSWN++++G         AL++F + +    + +  T
Sbjct: 255 ----------AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 150 FSI---LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-LN 205
           ++    L + +      +Q+H  +++ G  L+  V+  +L D Y K G L  A  +F + 
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM-TALADAYSKCGELADALNIFSMT 363

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
               +++SW ++ISGC  +G   LA+  F  MR     P+E+T S ++ A   +      
Sbjct: 364 TGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP---- 419

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ A  +K  +     V +A +  +SK    ED++ +F+ +++ D    + M+S + + 
Sbjct: 420 PQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQA 479

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVV 383
           G  E A  LF  M  + I+P EFT+S V+ +   P   V+ G QFH+++IK  +     V
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +S+L+ MY++ G+IDS+  +F +   RDLVSWN+++ G  Q+G + + ++ F ++   G+
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D +T  AV++ C + G V +G   F +M  ++ + P  EHYAC++DL  +AG+L + +
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETM 659

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +   MPF  G  +W ++L A  ++ +V+L +  A++++ L+      Y LL+  YA  G
Sbjct: 660 SLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAG 719

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +W+    V+K+M    + K  GCSWI IKN++++F A +  H    +IY  L+++   ++
Sbjct: 720 KWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLK 779

Query: 624 DEG 626
            +G
Sbjct: 780 QDG 782



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 200/371 (53%), Gaps = 10/371 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++   ++VF+ +P+ +VV+W S+++G A        + +F +M+ +G+ P+ FTF+
Sbjct: 146 MKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFA 205

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +LS V+S      G+++H   ++ G   S+V + NSL++MY K G++  A  VF  ME 
Sbjct: 206 SVLSAVASQGALDLGQRVHAQSVKFGCR-SSVFVCNSLMNMYAKCGLVEDAKSVFNWMET 264

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SWN+L++G   +     AL  F+  R +     + T + VI  C  L+ L   +Q+
Sbjct: 265 RDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQL 324

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGF 327
            +  +K GF     V++A  D +SKC  L D++ +F         V    +IS   + G 
Sbjct: 325 HSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGD 384

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
             +A+ LF  M  + + P EFT S +L +S+ I P     Q H+  IK+ +     V ++
Sbjct: 385 IPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP----PQIHAQVIKTNYQHIPFVGTA 440

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+  Y+K GS + +  IF  ++++D+V+W+ ++    Q G       +F ++  +G+ P+
Sbjct: 441 LLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPN 500

Query: 447 RITLAAVLLAC 457
             T+++V+ AC
Sbjct: 501 EFTISSVIDAC 511



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 172/362 (47%), Gaps = 12/362 (3%)

Query: 104 FDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSS 159
            DEIP  D  V  N ++  YA  G     L+ FS  +  GV     T S +L    +V  
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              G+Q+H   ++ G     V  G SL+DMY K G +     VF  M + ++++W SL++
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           GC ++      +  F+ MR  G  P+ +T + V++A      LD G++V A SVK G  S
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS 234

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V ++ +++++KC  +ED+  +F  ++  D    N +++        E  LE  QL  
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG---LQLNECELEALQLFH 291

Query: 340 REDIRPTEFTLSCVLSSIP----IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
                  + T S   + I     +  +    Q HS  +K GF     V ++L + Y+K G
Sbjct: 292 ESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCG 351

Query: 396 SIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +  +  IF +    R++VSW  I+ G  QNG     + +F  + E+ + P+  T +A+L
Sbjct: 352 ELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411

Query: 455 LA 456
            A
Sbjct: 412 KA 413



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 183/402 (45%), Gaps = 37/402 (9%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A + K + S  + +I  C + K    A+ +H  + K GF+    +     D YS+ G  
Sbjct: 294 RATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGEL 353

Query: 67  DDVLQLFD-EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
            D L +F      +N +SW   + G +++           +IP                 
Sbjct: 354 ADALNIFSMTTGSRNVVSWTAIISGCIQN----------GDIP----------------- 386

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
                A+ +FS+M+   V P+ FT+S +L   S +    QIH  +I++       V G +
Sbjct: 387 ----LAVVLFSRMREDRVMPNEFTYSAMLKA-SLSILPPQIHAQVIKTNYQHIPFV-GTA 440

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           L+  Y K G    A  +F  +E+ D+++W++++S    +G  E A   F  M   G  P+
Sbjct: 441 LLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPN 500

Query: 246 EYTISIVINACT-KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           E+TIS VI+AC      +D+G+Q  A+S+K  +     V SA + ++S+   ++ +  +F
Sbjct: 501 EFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVF 560

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVE 363
           E+    D    N MIS Y ++G+   A+E F+ M    I+    T L+ ++       V 
Sbjct: 561 ERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVV 620

Query: 364 HGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            G Q F SM      +      + ++++Y++ G +D +  + 
Sbjct: 621 EGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 12/188 (6%)

Query: 296 RLEDSVRL---------FEQLDRWDYAV-INVMISTYGRYGFGEVALELFQLMLREDIRP 345
           R+ED V L          +++ R D AV  N ++  Y R G     L+ F +  R  +  
Sbjct: 38  RVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLV 97

Query: 346 TEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVA-SSLMEMYAKTGSIDSSTEI 403
              TLSCVL +   +P    G Q H + +K G D   V A +SL++MY K GS+    E+
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  + K+++V+W +++ G       +E + +F  +  EG+ P+  T A+VL A    G +
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 464 DKGMLVFS 471
           D G  V +
Sbjct: 218 DLGQRVHA 225


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 166/551 (30%), Positives = 299/551 (54%), Gaps = 19/551 (3%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +FD++ ++N ISWN  + G + +  ++ A +VFD +PE +VVSW +M+ GY   G    A
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA 210

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
             +F +M  + V     +++++L  +     G+      +   +   +VV   ++I  Y 
Sbjct: 211 ETLFWQMPEKNV----VSWTVMLGGLLQ--EGRIDEACRLFDMMPEKDVVTRTNMIGGYC 264

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           ++G L  A  +F  M   +++SW ++I+G   +   ++A   F  M       +E + + 
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP----EKNEVSWTA 320

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           ++   T    LD+  ++F A+ +K     N+++L      F +   +  + ++F+Q+   
Sbjct: 321 MLKGYTNCGRLDEASELFNAMPIKSVVACNAMILC-----FGQNGEVPKARQVFDQMREK 375

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D    + MI  Y R G    ALELF++M RE IRP   +L  VLS    +  ++HG + H
Sbjct: 376 DEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIH 435

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +  ++S FD +  VAS L+ MY K G++  + ++F +   +D+V WN+I+ G  Q+G   
Sbjct: 436 AQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGV 495

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L VF ++   G+ PD +T   VL AC+Y G V KG+ +F++M+ +Y V    EHYAC+
Sbjct: 496 EALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACM 555

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG+L +A+D+   MP +    IW ++L A   +  + L E  A++++ L+  + 
Sbjct: 556 VDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNA 615

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
            P+ LL+  YA +GRW+ +  +++ MR   ++K  GCSWI ++ +++ F  G+   H   
Sbjct: 616 GPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEH 675

Query: 610 KIYLVLRLLTW 620
               + R+L W
Sbjct: 676 S--EINRILEW 684



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 173/363 (47%), Gaps = 40/363 (11%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y + G   +   LFDE+P++N +SW   + G +++  +D A K+F+ +PE + VSW +M+
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
            GY +CG  D A E+F+ M ++ V                AC                  
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSV---------------VAC------------------ 349

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
               N++I  +G+ G +  A  VF  M E D  +W+++I      G    AL+ F  M+ 
Sbjct: 350 ----NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQR 405

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            G  P+  ++  V++ C  L NLD G+++ A  V+  F  +  V S  + ++ KC  L  
Sbjct: 406 EGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAK 465

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           + ++F++    D  + N +I+ Y ++G G  AL +F  M    I P + T   VLS+   
Sbjct: 466 AKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSY 525

Query: 360 P-PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWN 416
              V+ G + F+SM  K   +      + ++++  + G ++ + ++  K+  + D + W 
Sbjct: 526 TGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWG 585

Query: 417 TIM 419
            ++
Sbjct: 586 ALL 588



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 196/468 (41%), Gaps = 52/468 (11%)

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-- 237
           ++  NSLI  Y +LG +  A  VF  M + +IISWNS+++G F +   + A + F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 238 ----RYSGYSPDEYTISIVINACTKL------RNLDKGKQVFALSVKVGFLSNSI----- 282
                ++G     Y  + +IN   ++      RN+     +    VK G +S +      
Sbjct: 158 RNTISWNGLVSG-YINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 283 -----VLSATIDL--FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
                V+S T+ L    +  R++++ RLF+ +   D      MI  Y + G    A  LF
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
             M R ++      ++  + +  +        F  M      + N V  +++++ Y   G
Sbjct: 277 DEMPRRNVVSWTTMITGYVQNQQVDIAR--KLFEVMP-----EKNEVSWTAMLKGYTNCG 329

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +D ++E+F  +  + +V+ N +++   QNG   +   VF+++ E+    D  T +A++ 
Sbjct: 330 RLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK----DEGTWSAMIK 385

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM---PFQ 512
                G     + +F  M+ E G+ P       ++ +      L    +I + +    F 
Sbjct: 386 VYERKGLELDALELFRMMQRE-GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD 444

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
               +   +L      G++   + V +R     +   + ++ +   YA  G     +RV 
Sbjct: 445 LDVYVASVLLSMYIKCGNLAKAKQVFDR---FAVKDVVMWNSIITGYAQHGLGVEALRVF 501

Query: 573 KVMRKNGI--------NKVTGCSWIG-IKNRIYTFNAGELQHHGGQKI 611
             M  +GI          ++ CS+ G +K  +  FN+ E ++   QKI
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKI 549



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 35/201 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + D  + IH  L +  F+   Y+ +  L +Y + G      Q+FD    K+ + W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               S+I+GYA  G    AL +F  M   G+ 
Sbjct: 482 N-------------------------------SIITGYAQHGLGVEALRVFHDMHFSGIM 510

Query: 145 PSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   TF  +LS  S   +   G +I  SM         +     ++D+ G+ G L  A  
Sbjct: 511 PDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMD 570

Query: 202 VFLNME-ELDIISWNSLISGC 221
           +   M  E D I W +L+  C
Sbjct: 571 LIEKMPMEADAIIWGALLGAC 591


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 166/551 (30%), Positives = 299/551 (54%), Gaps = 19/551 (3%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +FD++ ++N ISWN  + G + +  ++ A +VFD +PE +VVSW +M+ GY   G    A
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA 210

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
             +F +M  + V     +++++L  +     G+      +   +   +VV   ++I  Y 
Sbjct: 211 ETLFWQMPEKNV----VSWTVMLGGLLQ--EGRIDEACRLFDMMPEKDVVTRTNMIGGYC 264

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           ++G L  A  +F  M   +++SW ++I+G   +   ++A   F  M       +E + + 
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP----EKNEVSWTA 320

Query: 252 VINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           ++   T    LD+  ++F A+ +K     N+++L      F +   +  + ++F+Q+   
Sbjct: 321 MLKGYTNCGRLDEASELFNAMPIKSVVACNAMILC-----FGQNGEVPKARQVFDQMREK 375

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D    + MI  Y R G    ALELF++M RE IRP   +L  VLS    +  ++HG + H
Sbjct: 376 DEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIH 435

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +  ++S FD +  VAS L+ MY K G++  + ++F +   +D+V WN+I+ G  Q+G   
Sbjct: 436 AQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGV 495

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L VF ++   G+ PD +T   VL AC+Y G V KG+ +F++M+ +Y V    EHYAC+
Sbjct: 496 EALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACM 555

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG+L +A+D+   MP +    IW ++L A   +  + L E  A++++ L+  + 
Sbjct: 556 VDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNA 615

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
            P+ LL+  YA +GRW+ +  +++ MR   ++K  GCSWI ++ +++ F  G+   H   
Sbjct: 616 GPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEH 675

Query: 610 KIYLVLRLLTW 620
               + R+L W
Sbjct: 676 S--EINRILEW 684



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 173/363 (47%), Gaps = 40/363 (11%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y + G   +   LFDE+P++N +SW   + G +++  +D A K+F+ +PE + VSW +M+
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
            GY +CG  D A E+F+ M ++ V                AC                  
Sbjct: 323 KGYTNCGRLDEASELFNAMPIKSV---------------VAC------------------ 349

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
               N++I  +G+ G +  A  VF  M E D  +W+++I      G    AL+ F  M+ 
Sbjct: 350 ----NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQR 405

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            G  P+  ++  V++ C  L NLD G+++ A  V+  F  +  V S  + ++ KC  L  
Sbjct: 406 EGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAK 465

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           + ++F++    D  + N +I+ Y ++G G  AL +F  M    I P + T   VLS+   
Sbjct: 466 AKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSY 525

Query: 360 P-PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWN 416
              V+ G + F+SM  K   +      + ++++  + G ++ + ++  K+  + D + W 
Sbjct: 526 TGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWG 585

Query: 417 TIM 419
            ++
Sbjct: 586 ALL 588



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 196/468 (41%), Gaps = 52/468 (11%)

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-- 237
           ++  NSLI  Y +LG +  A  VF  M + +IISWNS+++G F +   + A + F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 238 ----RYSGYSPDEYTISIVINACTKL------RNLDKGKQVFALSVKVGFLSNSI----- 282
                ++G     Y  + +IN   ++      RN+     +    VK G +S +      
Sbjct: 158 RNTISWNGLVSG-YINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 283 -----VLSATIDL--FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
                V+S T+ L    +  R++++ RLF+ +   D      MI  Y + G    A  LF
Sbjct: 217 MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
             M R ++      ++  + +  +        F  M      + N V  +++++ Y   G
Sbjct: 277 DEMPRRNVVSWTTMITGYVQNQQVDIAR--KLFEVMP-----EKNEVSWTAMLKGYTNCG 329

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +D ++E+F  +  + +V+ N +++   QNG   +   VF+++ E+    D  T +A++ 
Sbjct: 330 RLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK----DEGTWSAMIK 385

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM---PFQ 512
                G     + +F  M+ E G+ P       ++ +      L    +I + +    F 
Sbjct: 386 VYERKGLELDALELFRMMQRE-GIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD 444

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
               +   +L      G++   + V +R     +   + ++ +   YA  G     +RV 
Sbjct: 445 LDVYVASVLLSMYIKCGNLAKAKQVFDR---FAVKDVVMWNSIITGYAQHGLGVEALRVF 501

Query: 573 KVMRKNGI--------NKVTGCSWIG-IKNRIYTFNAGELQHHGGQKI 611
             M  +GI          ++ CS+ G +K  +  FN+ E ++   QKI
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKI 549



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 75/201 (37%), Gaps = 35/201 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + D  + IH  L +  F+   Y+ +  L +Y + G      Q+FD    K+ + W
Sbjct: 422 CAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMW 481

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               S+I+GYA  G    AL +F  M   G+ 
Sbjct: 482 N-------------------------------SIITGYAQHGLGVEALRVFHDMHFSGIM 510

Query: 145 PSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   TF  +LS  S   +   G +I  SM         +     ++D+ G+ G L  A  
Sbjct: 511 PDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMD 570

Query: 202 VFLNME-ELDIISWNSLISGC 221
           +   M  E D I W +L+  C
Sbjct: 571 LIEKMPMEADAIIWGALLGAC 591


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 171/548 (31%), Positives = 306/548 (55%), Gaps = 23/548 (4%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L ++ +L +A KVFD + E  VV W  +IS Y     ++ A+E+F      G  P  +T 
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTM 257

Query: 151 SILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV---LYYAFGVFL 204
           S ++S  +   S   G Q+H   +R GL+ S+  +   L+DMY K  +   + YA  VF 
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGLA-SDACVSCGLVDMYAKSNIGQAMDYANKVFE 316

Query: 205 NMEELDIISWNSLISGCFNSGYGE---LALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            M + D+ISW +LISG   SG  E   +AL  F  M      P+  T S ++ +C  + +
Sbjct: 317 RMPKNDVISWTALISGYVQSGVQENKVMAL--FGEMLNESIKPNHITYSSILKSCASISD 374

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
            D G+QV A  +K    S   V +A + ++++   +E++ R+F QL  ++ ++I  +  T
Sbjct: 375 HDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQL--YERSMIPCI--T 430

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
            GR         L   ++R D+  +  T + ++S+   +  +  G Q H+M++K+GF S+
Sbjct: 431 EGR------DFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSD 484

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V++SL+ MY++ G ++ +   F +L  R+++SW +++ GL ++G A   L +F +++ 
Sbjct: 485 RFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMIL 544

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G+ P+ +T  AVL AC++ G V +G   F +M+ ++G++P  EHYAC++DLL ++G + 
Sbjct: 545 TGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVK 604

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A++  + MP +    +W+++L A   + ++++ E  A+ +++L+   P PY LL+  YA
Sbjct: 605 EALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYA 664

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             G W+ + R++  MR N +NK TG SW+ ++N  + F AG+  H   Q IY  L  L  
Sbjct: 665 DAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVR 724

Query: 621 EMEDEGCV 628
           +++  G V
Sbjct: 725 QIKGMGYV 732



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 171/329 (51%), Gaps = 18/329 (5%)

Query: 99  TALKVFDEIPE-PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           +A  VFD +    D+VSW +M S  A  G    +L +  +M   G+ P+ +T    L   
Sbjct: 102 SARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYT----LCAA 157

Query: 158 SSACHGKQIHGSMI--------RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           + AC   +++  +         + GL  ++V +G++LIDM  + G L  A  VF  + E 
Sbjct: 158 AHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEK 217

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            ++ W  LIS        E A++ F      G+ PD YT+S +I+ACT+L ++  G Q+ 
Sbjct: 218 TVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLH 277

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           +L++++G  S++ V    +D+++K N    ++ + ++FE++ + D      +IS Y + G
Sbjct: 278 SLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSG 337

Query: 327 FGE-VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
             E   + LF  ML E I+P   T S +L S   I   + G Q H+  IKS   S   V 
Sbjct: 338 VQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVG 397

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           ++L+ MYA++G ++ +  +F +L +R ++
Sbjct: 398 NALVSMYAESGCMEEARRVFNQLYERSMI 426



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 137/295 (46%), Gaps = 50/295 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           S ++  C S    D  + +H H+ K    +AHT +GN  + +Y+  G  ++  ++F+++ 
Sbjct: 363 SSILKSCASISDHDSGRQVHAHVIKSNQASAHT-VGNALVSMYAESGCMEEARRVFNQLY 421

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV----VSWNSMISGYASCGYSDYALE 133
           +++ I    C+     ++  D  L     I   DV     ++ S+IS  AS G       
Sbjct: 422 ERSMIP---CI-----TEGRDFPLD--HRIVRMDVGISSSTFASLISAAASVG------- 464

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           M +K                         G+Q+H   +++G   S+  + NSL+ MY + 
Sbjct: 465 MLTK-------------------------GQQLHAMSLKAGFG-SDRFVSNSLVSMYSRC 498

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A   F  +++ ++ISW S+ISG    GY E AL  F+ M  +G  P++ T   V+
Sbjct: 499 GYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVL 558

Query: 254 NACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +AC+ +  + +GK+ F ++    G +      +  +DL ++   +++++    ++
Sbjct: 559 SACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEM 613



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 37/213 (17%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + LI    S       + +H    K GF +  ++ N  + +YSR G  +D  + F
Sbjct: 449 SSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSF 508

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           +E+  +N ISW                                SMISG A  GY++ AL 
Sbjct: 509 NELKDRNVISW-------------------------------TSMISGLAKHGYAERALS 537

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F  M L GV+P+  T+  +LS  S       GK+   SM R    +  +     ++D+ 
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 191 GKLGVLYYAFGVFLNMEEL--DIISWNSLISGC 221
            + G++  A   F+N   L  D + W +L+  C
Sbjct: 598 ARSGIVKEALE-FINEMPLKADALVWKTLLGAC 629



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 12/200 (6%)

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVINVMISTYGRYGFGEVALELFQLM 338
           +++V ++ + L+S+C  +  +  +F+ +    D      M S   R G    +L L   M
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEM 142

Query: 339 LREDIRPTEFTLSCVLSSIPIP-------PVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           L   + P  +TL C  +    P               H M +   + ++  V S+L++M 
Sbjct: 143 LESGLLPNAYTL-CAAAHACFPHELYCLVGGVVLGLVHKMGL---WGTDVAVGSALIDML 198

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           A+ G + S+ ++F  L ++ +V W  ++    Q   A E +++F + LE+G  PDR T++
Sbjct: 199 ARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMS 258

Query: 452 AVLLACNYGGFVDKGMLVFS 471
           +++ AC   G V  G+ + S
Sbjct: 259 SMISACTELGSVRLGLQLHS 278


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 191/623 (30%), Positives = 310/623 (49%), Gaps = 40/623 (6%)

Query: 12   KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
            KA  S   +L+  C + + F   + IHG++ +LGF ++  + N  + +YSR G  +   +
Sbjct: 623  KAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRK 682

Query: 72   LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGY 127
            +F+ +  +N  SWN  +    +   +D A+ + DE+     +PD+V+WNS++SGYAS   
Sbjct: 683  VFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKAL 742

Query: 128  SDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGN 184
            S  A+ +  ++Q+ G++P+  + S LL  V        GK IHG +IR+ L   +V +  
Sbjct: 743  SRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQL-WYDVYVET 801

Query: 185  SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
            +LIDMY K G L YA  VF  M+E +I++WNSLISG   +G  + A      M   G   
Sbjct: 802  TLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKS 861

Query: 245  DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
            +  T + +++        +K   V     K G   N +  +A   + S C          
Sbjct: 862  NAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTA---ILSGC---------- 908

Query: 305  EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
                           S  G +G G   L++F  M  E + P   T+S +L  +  +  + 
Sbjct: 909  ---------------SKNGNFGNG---LKIFLKMQEEGVSPNSATISSLLRILGCLSLLY 950

Query: 364  HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
             G + HS  +K+    +A VA++L++MYAK+G + S+ EIF  +  + L SWN ++MG  
Sbjct: 951  SGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYA 1010

Query: 424  QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
               R  E + VF  +LE G+ PD IT  +VL  C   G V +G   F  M+  YGV+P  
Sbjct: 1011 MFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTI 1070

Query: 484  EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            EH +C+++LL ++G L +A D   TMP +P  +IW + L +  I+ D++L E   +R+  
Sbjct: 1071 EHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQV 1130

Query: 544  LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
            L+  +   Y ++   Y+   RW  + R++  M  N +      SWI I   ++ F A   
Sbjct: 1131 LEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGK 1190

Query: 604  QHHGGQKIYLVLRLLTWEMEDEG 626
             H    +IY  L  L  EM+  G
Sbjct: 1191 AHPDEGEIYFELYKLVSEMKKSG 1213



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 208/454 (45%), Gaps = 44/454 (9%)

Query: 113 VSWNSMISGYASCGYSDY-ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHG 168
           VSW   +      G   Y  LE F ++Q +GV       +++    +   +   G  IHG
Sbjct: 489 VSWRDFLEKAEDFGVEKYKVLEEFVRLQNKGVNFDEVVLAMVFRICAVLMYRFLGFTIHG 548

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            +I+ GL  S+  + ++L+  YG+   L  A  +F  M + D ++WN ++     SG  E
Sbjct: 549 GLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWE 608

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            A+  F  MR+SG    + T+  ++  C+      +G+Q+    +++GF SN  + ++ I
Sbjct: 609 KAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLI 668

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM----LREDI- 343
            ++S+  +LE S ++F  +   + +  N ++S+Y R G+ + A+ L   M    L+ DI 
Sbjct: 669 VMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIV 728

Query: 344 ------------------------------RPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
                                         +P   ++S +L ++  P  V+ G   H   
Sbjct: 729 TWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYV 788

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           I++    +  V ++L++MY KTG +  +  +F  +D++++V+WN+++ GL+  G   E  
Sbjct: 789 IRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAE 848

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            +   + +EG+  + +T  +++      G  +K + V   MK+  GV P    +  I+  
Sbjct: 849 ALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKN-GVEPNVVSWTAILSG 907

Query: 493 LCQAGQLGKAIDITSTMPFQ---PGCSIWESILR 523
             + G  G  + I   M  +   P  +   S+LR
Sbjct: 908 CSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLR 941



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 235/527 (44%), Gaps = 64/527 (12%)

Query: 18   CSQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
            C+ L+ R L F       TIHG L K G  N+ T + +  +  Y R              
Sbjct: 534  CAVLMYRFLGF-------TIHGGLIKRGLDNSDTRVVSALMGFYGR-------------- 572

Query: 77   PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                C+S             LD A K+FDE+P+ D ++WN ++      G  + A+++F 
Sbjct: 573  ----CVS-------------LDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFR 615

Query: 137  KMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             M+  G +    T   LL   S+      G+QIHG ++R G   SNV + NSLI MY + 
Sbjct: 616  VMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFE-SNVSMCNSLIVMYSRN 674

Query: 194  GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            G L  +  VF +M + ++ SWNS++S     GY + A+     M   G  PD  T + ++
Sbjct: 675  GKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLL 734

Query: 254  NA-CTKLRNLDKG---KQVFALSVKVGFLSNSIVLSATIDL-FSKCNRLEDSVRLFEQLD 308
            +   +K  + D     K++    +K    S S +L A  +    K  +      +  QL 
Sbjct: 735  SGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQL- 793

Query: 309  RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ 367
             +D  V   +I  Y + G+   A  +F +M  ++I       + ++S +     ++    
Sbjct: 794  WYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNI----VAWNSLISGLSYTGLLKEAEA 849

Query: 368  FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR----DLVSWNTIMMGLT 423
              S   K G  SNAV  +SL+  YA  G  + +  +  K+ K     ++VSW  I+ G +
Sbjct: 850  LISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCS 909

Query: 424  QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPG 482
            +NG     L +F ++ EEG+ P+  T++++L        +  G  V S  +K     +  
Sbjct: 910  KNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNN---LTR 966

Query: 483  EEHYA-CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            + H A  ++D+  ++G L  A +I   +  +P  S W  ++   A++
Sbjct: 967  DAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLAS-WNCMIMGYAMF 1012


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 169/572 (29%), Positives = 302/572 (52%), Gaps = 48/572 (8%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y++     +  +LFDE+  KN +SWN  L G  K+  +   L+ F+ + E +VVSWN M+
Sbjct: 150 YAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMV 209

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN 179
            GY   G  D A   F K+      P+  ++  +LS    A +G+      + + +   N
Sbjct: 210 DGYVGVGDLDSAWMFFKKIPT----PNVVSWVTMLSGF--AHYGRMTEARNLFNEMPTKN 263

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           +V  N++I  Y +   +  A+ +F+ M E D +SW ++I+G    G    A +    M Y
Sbjct: 264 LVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPY 323

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLE 298
              +      + +IN   +   +D+  ++F+ +SV+     +S+  ++ I  ++ C R +
Sbjct: 324 KNIAAQ----TAMINGYLQSGRMDEANEIFSQISVR-----DSVCWNSMITGYAHCGRTD 374

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ---------------------- 336
           +++RLF+++   D    N MI+ Y + G  + ALE+F                       
Sbjct: 375 EALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGL 434

Query: 337 ---------LMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
                    LM ++  +P + T+ C L +S  +  +  G Q H + IK+GF ++  V ++
Sbjct: 435 YFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNA 494

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           ++ MYAK+G +  +  +F ++  +D+VSWN+++ G   NG   E +++FE +   G+ PD
Sbjct: 495 ILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPD 554

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T   +L ACN+GGFVD+G+ +F +M E Y + P  EHYAC+I+LL + G+L +A++I 
Sbjct: 555 EVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIV 614

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             M       IW ++L A  I+ +++L +  AER++ L+  +   Y LL+  +A  GRW+
Sbjct: 615 QGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWD 674

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
            + RV+ +M++N   K  GCSWI I N+++ F
Sbjct: 675 MVERVRVLMKENKAEKQPGCSWIEIDNQLHCF 706



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 125/548 (22%), Positives = 236/548 (43%), Gaps = 55/548 (10%)

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           N  TY  N  +  Y++ G   +  +LFD +PQ+N +SWN  + G L ++ ++ A ++FD 
Sbjct: 45  NIVTY--NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
           + + D+ SW  MI+ Y   G  + A E+               F++L     + C    I
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKAREL---------------FNLLPDKQDTVCRNALI 147

Query: 167 HG----SMIRSGLSL------SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
            G     + R    L       NVV  NS++  Y K G +      F  M E +++SWN 
Sbjct: 148 AGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNL 207

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKV 275
           ++ G    G     LD  +       +P+  +   +++       + + + +F  +  K 
Sbjct: 208 MVDGYVGVG----DLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK- 262

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
               N +  +A I  + + N+++D+ +LF ++   D      MI+ Y R G    A E+ 
Sbjct: 263 ----NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            LM  ++I      ++  L S  +   E    F  ++++     ++V  +S++  YA  G
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMD--EANEIFSQISVR-----DSVCWNSMITGYAHCG 371

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
             D +  +F ++  +D+VSWNT++    Q G+  + L++F E+ E  +    ++  +++ 
Sbjct: 372 RTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNV----VSWNSLIT 427

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID---ITSTMPFQ 512
                G   + +  F  MK++ G  P +    C +        L   +    +T    F 
Sbjct: 428 GYVQNGLYFEALNCFILMKQQ-GEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFG 486

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
               +  +IL   A  G V   ENV     +++    + ++ L   YA+ G  +  V + 
Sbjct: 487 NDLFVKNAILTMYAKSGRVPEAENV---FAEIKXKDVVSWNSLIAGYALNGCGKEAVELF 543

Query: 573 KVMRKNGI 580
           +VM   GI
Sbjct: 544 EVMPLRGI 551



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           +  + +    +H    K GF    ++ N  L +Y++ G   +   +F EI  K+ +SW  
Sbjct: 466 NLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSW-- 523

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                                        NS+I+GYA  G    A+E+F  M L+G+ P 
Sbjct: 524 -----------------------------NSLIAGYALNGCGKEAVELFEVMPLRGIIPD 554

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGV 195
             TF+ LL    SAC+    HG  +  GL+L   +               +I++ G++G 
Sbjct: 555 EVTFTGLL----SACN----HGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGR 606

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGC 221
           L  A  +   M+ +     W +L+  C
Sbjct: 607 LEEAVEIVQGMKTVSSAKIWGALLWAC 633


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 173/594 (29%), Positives = 306/594 (51%), Gaps = 37/594 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH  + K G     Y+ N  + +Y RFG          ++P+                  
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFG----------KMPE------------------ 213

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLS 155
              A  +F  +   D+V+WNSM++G+   G    ALE F  +Q   ++P   +  SI+++
Sbjct: 214 ---AAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 156 T--VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +  +    +GK+IH   I++G   SN+++GN+LIDMY K   + Y    F  M   D+IS
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFD-SNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLIS 329

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W +  +G   +     AL+    ++  G   D   I  ++ AC  L  L K K++   ++
Sbjct: 330 WTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTI 389

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + G LS+ ++ +  ID++ +C  ++ +VR+FE ++  D      MIS Y   G    ALE
Sbjct: 390 R-GGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALE 448

Query: 334 LFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F  M    + P   TL  +LS++  +  ++ G + H   I+ GF     ++++L++MYA
Sbjct: 449 VFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYA 508

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           + GS++ + +IF     R+L+ W  ++     +G     +++F  + +E + PD IT  A
Sbjct: 509 RCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLA 568

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L AC++ G V++G      MK EY + P  EHY C++DLL +   L +A  I  +M  +
Sbjct: 569 LLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNE 628

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P   +W ++L A  I+ + ++ E  AE++++L L +P  Y L++  +A  GRW+ +  V+
Sbjct: 629 PTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVR 688

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             M+ +G+ K  GCSWI + N+I+ F + +  H    KIY  L  +T +++ EG
Sbjct: 689 MRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREG 742



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 245/478 (51%), Gaps = 12/478 (2%)

Query: 93  KSDNLDTALKVFDEI-PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K ++++ A K+FD +    DVVSWNS+IS Y+  G    AL +FS+M   GV  + +TF+
Sbjct: 105 KCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFA 164

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L     +     G QIH ++++SG  L +V + N+L+ MY + G +  A  +F N+E 
Sbjct: 165 AALQACEDSSFIKLGMQIHAAILKSGRVL-DVYVANALVAMYVRFGKMPEAAVIFGNLEG 223

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            DI++WNS+++G   +G    AL+ FY ++ +   PD+ +I  +I A  +L  L  GK++
Sbjct: 224 KDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEI 283

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A ++K GF SN +V +  ID+++KC  +    R F+ +   D        + Y +    
Sbjct: 284 HAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCY 343

Query: 329 EVALELFQLMLRE--DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
             ALEL + +  E  D+  T    S +L+   +  +    + H   I+ G  S+ V+ ++
Sbjct: 344 LQALELLRQLQMEGMDVDATMIG-SILLACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNT 401

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           ++++Y + G ID +  IF  ++ +D+VSW +++     NG A + L+VF  + E GL PD
Sbjct: 402 IIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD 461

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +TL ++L A      + KG  +   +  +  ++ G      ++D+  + G +  A  I 
Sbjct: 462 YVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNT-LVDMYARCGSVEDAYKIF 520

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYAMRG 563
            T        +W +++ A  ++G  +    +  RM D + +P  + +  L  A +  G
Sbjct: 521 -TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSG 577



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 198/381 (51%), Gaps = 13/381 (3%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSS 159
           +FD++ E  + +WN+M+ GY S G +  ALEM+ +M+  GV    +TF +LL     V  
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
              G +IHG  I+ G   S V + NSL+ +Y K   +  A  +F  M    D++SWNS+I
Sbjct: 74  LFCGAEIHGLAIKYGCD-SFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSII 132

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           S    +G    AL  F  M  +G   + YT +  + AC     +  G Q+ A  +K G +
Sbjct: 133 SAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRV 192

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +  V +A + ++ +  ++ ++  +F  L+  D    N M++ + + G    ALE F  +
Sbjct: 193 LDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDL 252

Query: 339 LREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
              D++P + + +S +++S  +  + +G + H+ AIK+GFDSN +V ++L++MYAK   +
Sbjct: 253 QNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCM 312

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
                 F  +  +DL+SW T   G  QN    + L++  +L  EG+  D   + ++LLAC
Sbjct: 313 SYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC 372

Query: 458 NYGGFVDKGMLVFSAMKEEYG 478
                  +G+     +KE +G
Sbjct: 373 -------RGLNCLGKIKEIHG 386



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 168/324 (51%), Gaps = 36/324 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IH +  K GF+++  +GN  +D+Y++                  C+S+         
Sbjct: 280 GKEIHAYAIKNGFDSNILVGNTLIDMYAKC----------------CCMSY--------- 314

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SI 152
                   + FD +   D++SW +  +GYA       ALE+  ++Q++G+        SI
Sbjct: 315 ------GGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSI 368

Query: 153 LLSTVSSACHG--KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LL+     C G  K+IHG  IR G  LS+ VL N++ID+YG+ G++ YA  +F ++E  D
Sbjct: 369 LLACRGLNCLGKIKEIHGYTIRGG--LSDPVLQNTIIDVYGECGIIDYAVRIFESIECKD 426

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SW S+IS   ++G    AL+ F SM+ +G  PD  T+  +++A   L  L KGK++  
Sbjct: 427 VVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHG 486

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             ++ GF+    + +  +D++++C  +ED+ ++F      +  +   MIS YG +G+GE 
Sbjct: 487 FIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEA 546

Query: 331 ALELFQLMLREDIRPTEFTLSCVL 354
           A+ELF  M  E I P   T   +L
Sbjct: 547 AVELFMRMKDEKIIPDHITFLALL 570



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 155/280 (55%), Gaps = 2/280 (0%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MYGK G +  A  +F  M E  I +WN+++ G  ++G    AL+ +  MR+ G S D YT
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL- 307
             +++ AC  + +L  G ++  L++K G  S   V+++ + L++KCN +  + +LF+++ 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS 366
            R D    N +IS Y   G    AL LF  ML+  +    +T +  L +      ++ G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H+  +KSG   +  VA++L+ MY + G +  +  IF  L+ +D+V+WN+++ G  QNG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
             +E L+ F +L    L PD++++ ++++A    G++  G
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 36/245 (14%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C         K IHG+  + G  +   L N  +D+Y   G  D  +++F+ I  K+ +SW
Sbjct: 372 CRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSW 430

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                           SMIS Y   G ++ ALE+FS M+  G+ 
Sbjct: 431 -------------------------------TSMISCYVHNGLANKALEVFSSMKETGLE 459

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +LS V   S+   GK+IHG +IR G  L   +  N+L+DMY + G +  A+ 
Sbjct: 460 PDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSI-SNTLVDMYARCGSVEDAYK 518

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F   +  ++I W ++IS     GYGE A++ F  M+     PD  T   ++ AC+    
Sbjct: 519 IFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGL 578

Query: 262 LDKGK 266
           +++GK
Sbjct: 579 VNEGK 583



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 56/238 (23%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  +    K IHG + + GF     + N  +D+Y+R G+ +D                  
Sbjct: 474 SLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVED------------------ 515

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                        A K+F      +++ W +MIS Y   GY + A+E+F +M+ + + P 
Sbjct: 516 -------------AYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPD 562

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG-----------NSLIDMYGKLGV 195
             TF  LL   S        H  ++  G S   ++               L+D+ G+   
Sbjct: 563 HITFLALLYACS--------HSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNC 614

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSPDEYTI 249
           L  A+ +  +M+ E     W +L+  C    N   GE+A ++   +     +P  Y +
Sbjct: 615 LEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLD--NPGNYVL 670


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 305/611 (49%), Gaps = 46/611 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    +  + +H H  K  F++   +G   +D+Y+                       
Sbjct: 302 CAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYA----------------------- 338

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K+++L  A + F  +P   V + N+M+ G    G    A+ +F  M    +R
Sbjct: 339 --------KANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIR 390

Query: 145 PSGFTFSIL-LSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                F ++ LS V SAC        G+Q+H   I+SG  + ++ + N+++D+YGK   L
Sbjct: 391 -----FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV-DICVNNAVLDLYGKCKAL 444

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A+ +F  M++ D +SWN++I+    +G+ +  +  F  M   G  PD++T   V+ AC
Sbjct: 445 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKAC 504

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             LR+L+ G  V    +K G  S++ V S  +D++ KC  ++++ +L +++        N
Sbjct: 505 AALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWN 564

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            ++S +      E A + F  ML   ++P  FT + VL +   +  +E G Q H   IK 
Sbjct: 565 AILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ 624

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
               +  ++S+L++MYAK G +  S  +F K++KRD VSWN ++ G   +G   E L +F
Sbjct: 625 EMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMF 684

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E + +E + P+  T  AVL AC++ G  D G   F  M   Y + P  EH+AC++D+L +
Sbjct: 685 ERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGR 744

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           +    +A+   ++MPFQ    IW+++L    I  DV++ E  A  ++ L       Y LL
Sbjct: 745 SKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILL 804

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           +  YA  G+W  + R ++++++  + K  GCSWI +++ ++ F  G+  H    ++Y +L
Sbjct: 805 SNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYEML 864

Query: 616 RLLTWEMEDEG 626
             L  EM+  G
Sbjct: 865 NDLIGEMKLSG 875



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 268/506 (52%), Gaps = 7/506 (1%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
           GF    ++ N  L +Y+R   +    ++FD +P+++ +SWN  L     + ++ TA+ +F
Sbjct: 89  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 148

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-- 162
           D +P+PDVVSWN+++SGY   G    ++++F +M  +GV P   TF++LL + S+     
Sbjct: 149 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 208

Query: 163 -GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H   +++GL + +V  G++L+DMYGK   L  A   F  M E + +SW + I+GC
Sbjct: 209 LGVQVHALAVKTGLEI-DVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGC 267

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +      L+ F  M+  G    + + +    +C  +  L+ G+Q+ A ++K  F S+ 
Sbjct: 268 VQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDR 327

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           +V +A +D+++K N L D+ R F  L        N M+    R G G  A+ LFQ M+R 
Sbjct: 328 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 387

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            IR    +LS V S+         G Q H +AIKSGFD +  V ++++++Y K  ++  +
Sbjct: 388 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEA 447

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             IF  + ++D VSWN I+  L QNG   +T+  F E+L  G+ PD  T  +VL AC   
Sbjct: 448 YLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL 507

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             ++ G++V   + +  G+       + ++D+ C+ G + +A  +   +  Q   S W +
Sbjct: 508 RSLEYGLMVHDKVIKS-GLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVS-WNA 565

Query: 521 ILRASAIYGDVKLTENVAERMMDLQL 546
           IL   ++  + +  +     M+D+ L
Sbjct: 566 ILSGFSLNKESEEAQKFFSEMLDMGL 591



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 244/512 (47%), Gaps = 36/512 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C + +       +H    K G       G+  +D+Y +  + DD L  F  +P++N
Sbjct: 197 LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERN 256

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQ 139
            +SW   + G ++++     L++F E+    + VS  S  S + SC              
Sbjct: 257 WVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSC-------------- 302

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
                          + +S    G+Q+H   I++  S S+ V+G +++D+Y K   L  A
Sbjct: 303 ---------------AAMSCLNTGRQLHAHAIKNKFS-SDRVVGTAIVDVYAKANSLTDA 346

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
              F  +    + + N+++ G   +G G  A+  F  M  S    D  ++S V +AC + 
Sbjct: 347 RRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAET 406

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           +   +G+QV  L++K GF  +  V +A +DL+ KC  L ++  +F+ + + D    N +I
Sbjct: 407 KGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAII 466

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFD 378
           +   + G  +  +  F  MLR  ++P +FT   VL +   +  +E+G   H   IKSG  
Sbjct: 467 AALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG 526

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+A VAS++++MY K G ID + ++  ++  + +VSWN I+ G + N  + E    F E+
Sbjct: 527 SDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM 586

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHYACIIDLLCQAG 497
           L+ GL PD  T A VL  C     ++ G  +    +K+E  ++  E   + ++D+  + G
Sbjct: 587 LDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEYISSTLVDMYAKCG 644

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            +  ++ +   +  +   S W +++   A++G
Sbjct: 645 DMPDSLLVFEKVEKRDFVS-WNAMICGYALHG 675



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 161/341 (47%), Gaps = 35/341 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K +   + +H    K GF+    + N  LDLY +     +   +F  + Q
Sbjct: 397 SGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQ 456

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N++I+     G+ D  +  F++M
Sbjct: 457 KDSVSW-------------------------------NAIIAALEQNGHYDDTILHFNEM 485

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  FT+  +L   + + S  +G  +H  +I+SGL  S+  + ++++DMY K G+
Sbjct: 486 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG-SDAFVASTVVDMYCKCGI 544

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +   +    ++SWN+++SG   +   E A   F  M   G  PD +T + V++ 
Sbjct: 545 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 604

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  ++ GKQ+    +K   L +  + S  +D+++KC  + DS+ +FE++++ D+   
Sbjct: 605 CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 664

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  Y  +G G  AL +F+ M +E++ P   T   VL +
Sbjct: 665 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRA 705



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 34/249 (13%)

Query: 243 SPDEYTISIVINACTKL-RNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDS 300
           +P   T S V  +C +  R      +     + V GF+  + V +  + ++++C     +
Sbjct: 54  APARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACA 113

Query: 301 VRLFEQLDRWDYAVINVMISTYG-------------------------------RYGFGE 329
            R+F+ + R D    N M++ Y                                + G  +
Sbjct: 114 RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 173

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            +++LF  M R  + P   T + +L S   +  +  G Q H++A+K+G + +    S+L+
Sbjct: 174 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 233

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K  S+D +   F  + +R+ VSW   + G  QN +    L++F E+   GL   + 
Sbjct: 234 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 293

Query: 449 TLAAVLLAC 457
           + A+   +C
Sbjct: 294 SYASAFRSC 302



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM------------ 420
           + SGF   A V++ L++MYA+      +  +F  + +RD VSWNT++             
Sbjct: 86  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 145

Query: 421 -------------------GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
                              G  Q G   E++D+F E+   G+ PDR T A +L +C+
Sbjct: 146 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 202


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/575 (30%), Positives = 301/575 (52%), Gaps = 41/575 (7%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + +HG + KLGF +  ++GN  L  Y                   NC            
Sbjct: 60  GREVHGSVVKLGFESDVFVGNTLLSFYG------------------NC------------ 89

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCG--YSDYALEMFSKMQLQGVRPSGFTFS 151
              L  A +VFDE+PE D+VSWN+MI  ++  G  Y D AL+MF  M  +G++P+  T S
Sbjct: 90  -GGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRD-ALDMFRLMIDEGLKPNSITIS 147

Query: 152 ILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L  +        G+++HGS IR GL  S++ + NSLIDMY K G    A  VF  ++ 
Sbjct: 148 SFLPVLVELEFFKAGREVHGSSIRMGLE-SDIFIANSLIDMYAKSGHSTEASNVFYKLDA 206

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SWN++I+    + +  +A+     M+  G  P+  T + V+ AC ++  +  GK++
Sbjct: 207 KNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEI 266

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A S+ +G   +  V +A  D+++K   L+ +  +F+   R D    N++I  + +    
Sbjct: 267 HARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLR-DEVSYNILIVGHSQTSDC 325

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             +L LF  M    ++    +    LS+   +  ++ G + H   ++  F  +  VA+SL
Sbjct: 326 SESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSL 385

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++ Y K G I  +  IF ++  +D+ SWNT+++G    G     +D+FE + ++ +  D 
Sbjct: 386 LDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDS 445

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           ++  AVL AC++GG ++KG   F  +K   G+ P + HYAC++DLL +AG + +A ++  
Sbjct: 446 VSFIAVLSACSHGGLLEKGRKYFDELKAR-GIEPTQMHYACMVDLLGRAGLMEEAAELIK 504

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            +P  P  +IW ++L A  IYG+++L    AE + +L+      Y+LL+  YA  GRW+ 
Sbjct: 505 GLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSNMYAETGRWDE 564

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
             R++++M+  G+ K  GCSW+ I  + + F  GE
Sbjct: 565 ANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGE 599



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 219/439 (49%), Gaps = 24/439 (5%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMI 171
           WN++I GY+  G     LE++++M   GVRP   TF  +L   + A     G+++HGS++
Sbjct: 10  WNTLIRGYSIAGVGG-GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGEL 229
           + G   S+V +GN+L+  YG  G L  A  VF  M E D++SWN++I G F  N  +   
Sbjct: 69  KLGFE-SDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMI-GVFSVNGWHYRD 126

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           ALD F  M   G  P+  TIS  +    +L     G++V   S+++G  S+  + ++ ID
Sbjct: 127 ALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLID 186

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           +++K     ++  +F +LD  +    N MI+ + +  F  VA+ L + M      P   T
Sbjct: 187 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVT 246

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
            + VL +   +  V  G + H+ +I  G   +  V+++L +MYAK+G +  +  +F    
Sbjct: 247 FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVF-DTS 305

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
            RD VS+N +++G +Q    +E+L +F E+   GL  D ++    L AC     + +G  
Sbjct: 306 LRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQG-- 363

Query: 469 VFSAMKEEYGVMPGEEHYA------CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
                KE +G +  +  +        ++D   + G++G A +I   M  +   S W +++
Sbjct: 364 -----KEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVAS-WNTMI 417

Query: 523 RASAIYGDVKLTENVAERM 541
               + G++    ++ E M
Sbjct: 418 LGYGMLGELDTAIDLFENM 436



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 175/389 (44%), Gaps = 37/389 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +   +  + F   + +HG   ++G  +  ++ N  +D+Y++ G S +   +F ++  
Sbjct: 147 SSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDA 206

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +                               SWN+MI+ +A   +   A+ +  +M
Sbjct: 207 KNVV-------------------------------SWNAMIANFAQNRFELVAVGLVRQM 235

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G  P+  TF+ +L   +       GK+IH   I  G +  ++ + N+L DMY K G 
Sbjct: 236 QDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAF-DLFVSNALTDMYAKSGH 294

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF +    D +S+N LI G   +     +L  F  M+  G   D  +    ++A
Sbjct: 295 LKLARNVF-DTSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSA 353

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  + +GK++    ++  F  +  V ++ +D ++KC R+  +  +F+++   D A  
Sbjct: 354 CANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASW 413

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N MI  YG  G  + A++LF+ M ++D+     +   VLS+      +E G ++      
Sbjct: 414 NTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA 473

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
            G +   +  + ++++  + G ++ + E+
Sbjct: 474 RGIEPTQMHYACMVDLLGRAGLMEEAAEL 502


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 173/553 (31%), Positives = 290/553 (52%), Gaps = 6/553 (1%)

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
             N +  N  L    K   L  A +VF E+P  D V++N+M+ G +  G    AL++F+ 
Sbjct: 172 HSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAA 231

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+ +G+  + FTFS +L+    V   C G+Q+HG + R+  + SNV + NSL+D Y K  
Sbjct: 232 MRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARA--TSSNVFVNNSLLDFYSKCD 289

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L     +F  M E D +S+N +I+G   +    + L  F  M+   +       + +++
Sbjct: 290 CLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLS 349

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
               + ++  GKQ+ A  V +G  S  +V +A ID++SKC  L+ +   F   +      
Sbjct: 350 VAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVS 409

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAI 373
              MI+   + G  E AL+LF  M R  + P   T S  + +S  +  +  G Q HS  I
Sbjct: 410 WTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLI 469

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           +SG  S+    S+L++MY K G +D + + F ++ +R+ +SWN ++      G+A   + 
Sbjct: 470 RSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIK 529

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +FE +L  G  PD +T  +VL AC++ G  ++ M  F  M+ EYG+ P +EHY+C+ID L
Sbjct: 530 MFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTL 589

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            + G+  K  ++   MPF+    IW SIL +   +G+  L    AE++  +      PY 
Sbjct: 590 GRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYV 649

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           +L+  +A  G+WE    VKK+MR  G+ K TG SW+ +K+++Y+F++ +  +    +I  
Sbjct: 650 ILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKD 709

Query: 614 VLRLLTWEMEDEG 626
            L  L  EM+ +G
Sbjct: 710 ELERLYKEMDKQG 722



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 150/518 (28%), Positives = 246/518 (47%), Gaps = 15/518 (2%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN-CISWNICLRGLLKSD 95
           +   + K GF+  TY  N  L      G       LFD++P +N   S N  L G  +S 
Sbjct: 21  LDARMVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSG 80

Query: 96  NLDTALKVFDEIPEP--DVVSWNSMISGYASC--GYSDYALEMFSKMQLQGVRPSGFTFS 151
            L  A  +F   P    D V+W  MI  +AS     +  A+ +F  M  +GV P   T +
Sbjct: 81  QLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVA 140

Query: 152 ILLST------VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            +L+        ++A     +H   ++ GL  SNVV+ N+L+D Y K G+L  A  VF  
Sbjct: 141 TVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQE 200

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D +++N+++ GC   G    ALD F +MR  G +   +T S V+   T + +L  G
Sbjct: 201 MPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLG 260

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +QV  L V     SN  V ++ +D +SKC+ L++  +LF ++   D    NVMI+ Y   
Sbjct: 261 RQVHGL-VARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWN 319

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
               + L LF+ M            + +LS +  +P +  G Q H+  +  G  S  +V 
Sbjct: 320 RCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVG 379

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L++MY+K G +D++   F+  + +  VSW  ++ G  QNG+  E L +F  +   GL 
Sbjct: 380 NALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLS 439

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PDR T ++ + A +    +  G  + S +    G M      + ++D+  + G L +A+ 
Sbjct: 440 PDRATFSSTIKASSNLAMIGLGRQLHSYLIRS-GHMSSVFSGSALLDMYTKCGCLDEALQ 498

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
               MP +   S W +++ A A YG  K    + E M+
Sbjct: 499 TFDEMPERNSIS-WNAVISAYAHYGQAKNAIKMFEGML 535


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 181/613 (29%), Positives = 316/613 (51%), Gaps = 40/613 (6%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS ++  C S     F +  H  + K GF+ +  +G   + +Y+R        +LF +  
Sbjct: 44  CSVILQACSSPDYRIFGQQFHCFVIKCGFDENVVVGTSLIAMYTRS-------KLFGD-- 94

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                                 A KVFD +   DV  +N MI  YA  G  + A+ +F  
Sbjct: 95  ----------------------AEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFIN 132

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G++P+ +TF+ ++S          G+Q  G   + G  L+   +GN++I+MYGK G
Sbjct: 133 MLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGF-LNETSIGNAIINMYGKKG 191

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +   A  +F  M + ++ISW +LISG   SG G+ A+D F  +   G + D   ++ +++
Sbjct: 192 MAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILD 251

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            C++ RNL+ G Q+  L +K+G+     + +A +DL++KC  L  +  +F+ L     A 
Sbjct: 252 GCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIAS 311

Query: 315 INVMISTY---GRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS 370
            N +++ +    R G  E  + LF     + I+P   T S +LS S     +  G  +H+
Sbjct: 312 FNAILAGFMENSRDG-EEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHA 370

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            AIK+GF+++  VA++++ MYAK GSI+ +  +F  ++  D +SWN ++     +G+ A+
Sbjct: 371 YAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAK 430

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +FEE++++   PD IT+ ++L AC Y G    G+ +F+ M+ +YG+ P  EHYAC++
Sbjct: 431 VLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMV 490

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG L +A+DI +  PF     +W +++    + GD    +  ++ +++L      
Sbjct: 491 DLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAG 550

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y L++  YA     +   +V+ VM    ++K  G SWI I ++++ F A    H    +
Sbjct: 551 SYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEIDDKVHHFVASGKDHPESNE 610

Query: 611 IYLVLRLLTWEME 623
           IY  L LL  +M 
Sbjct: 611 IYAELDLLRDDMR 623



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 230/479 (48%), Gaps = 13/479 (2%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIH 167
           + ++W S+I GY      + AL + S+M   G   +  T S++L   SS  +   G+Q H
Sbjct: 5   NTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFH 64

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
             +I+ G    NVV+G SLI MY +  +   A  VF +M   D+  +N +I     +G G
Sbjct: 65  CFVIKCGFD-ENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNG 123

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
           E A+  F +M  +G  P++YT + +I+AC     +++G+Q   LS K GFL+ + + +A 
Sbjct: 124 EKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAI 183

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           I+++ K     ++ R+F  +   +      +IS Y R G G+ A++ F  +    +    
Sbjct: 184 INMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDS 243

Query: 348 FTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
             L+ +L        +E G Q H + IK G+     + ++L+++YAK G++ S+  +F  
Sbjct: 244 SLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDG 303

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAET--LDVFEELLEEGLPPDRITLAAVL-LACNYGGFV 463
           L  + + S+N I+ G  +N R  E   + +F     +G+ PD +T + +L L+ N+   +
Sbjct: 304 LSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHST-L 362

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
            +G   + A   + G          +I +  + G + +A  + + M      S W +++ 
Sbjct: 363 GRGR-CYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSIS-WNAMIS 420

Query: 524 ASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMR-KNGI 580
           A A++G       + E M+  +  P  +    + QA    G +   + +  VM  K GI
Sbjct: 421 AYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGI 479



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 33/245 (13%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           S  + ++D C   ++ +    IHG + KLG+     +G   +DLY++ G       +FD 
Sbjct: 244 SLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDG 303

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +  K   S+N  L G +++          D   +P V                     +F
Sbjct: 304 LSSKRIASFNAILAGFMENSR--------DGEEDPIV---------------------LF 334

Query: 136 SKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +  +L G++P   TFS LLS     S+   G+  H   I++G   +++ + N++I MY K
Sbjct: 335 NHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFE-ADLSVANAVITMYAK 393

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  +F  M + D ISWN++IS     G G   L  F  M    ++PDE TI  +
Sbjct: 394 CGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSI 453

Query: 253 INACT 257
           + ACT
Sbjct: 454 LQACT 458


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 179/595 (30%), Positives = 302/595 (50%), Gaps = 38/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H  L KLGF + T L N  +D+Y++ G                                
Sbjct: 222 LHAALMKLGFGSDTMLNNNLIDMYAKCG-------------------------------K 250

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A +VFD +PE +VVSW +++ G+   G +   L +F +M+  G  P+ FT S  L  
Sbjct: 251 LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 310

Query: 157 VSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                  G QIHG  +R+G    +VV  NSL+ MY K      A  VF  +   ++ +WN
Sbjct: 311 CGGGTRAGVQIHGVCVRTGFEGHDVV-ANSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 369

Query: 216 SLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSV 273
           S+ISG  ++G G  +L  F  M R     PDE+T + ++ AC+ L    +G QV A ++V
Sbjct: 370 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 429

Query: 274 K-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           + V   SN+I+  A +D++ KC+RL  ++++F+ L+R +      +I  + + G  + A+
Sbjct: 430 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 489

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LF+      +R     LS V++       VE G Q H    K+    +  VA+SL++MY
Sbjct: 490 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 549

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G    +   F ++  R++VSW  ++ G+ ++G   E +D+FEE+  EG+  D +   
Sbjct: 550 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYL 609

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           A+L AC++ G VD+    FS + ++  + P  EHYAC++DLL +AG+L +A ++  +MP 
Sbjct: 610 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPM 669

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W+++L A  ++ DV +   V + ++ +   +P+ Y +L+   A  G W     +
Sbjct: 670 EPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGI 729

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTF-NAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +  MR+ G+ K  GCSW  +   ++ F   G+  H     I   LR +   M + 
Sbjct: 730 RGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRER 784



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 198/389 (50%), Gaps = 11/389 (2%)

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           SS   G Q+H ++++ G   S+ +L N+LIDMY K G L+ A  VF  M E +++SW +L
Sbjct: 214 SSLRGGVQLHAALMKLGFG-SDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTAL 272

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           + G  + G     L  F  MR SG SP+E+T+S  + AC        G Q+  + V+ GF
Sbjct: 273 MVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQIHGVCVRTGF 330

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             + +V ++ + ++SK     D+ R+F+ +   + A  N MIS Y   G G  +L +F+ 
Sbjct: 331 EGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFRE 390

Query: 338 M-LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH-SMAIKS-GFDSNAVVASSLMEMYAK 393
           M  R D +P EFT + +L +   +     G+Q H +MA++     SNA++A +L+++Y K
Sbjct: 391 MQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVK 450

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
              +  + ++F  L++R+ + W T+++G  Q G+  E + +F      G+  D   L++V
Sbjct: 451 CHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 510

Query: 454 LLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +        V++G  V     K   G+     +   ++D+  + G  G+A      MP +
Sbjct: 511 VAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGEAGRRFREMPAR 568

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERM 541
              S W +++     +G  +   ++ E M
Sbjct: 569 NVVS-WTAMINGVGKHGHGREAIDLFEEM 596



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 8/305 (2%)

Query: 233 QFYSMRYSGYSPDEYT--ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           Q  ++   G+ P E    I+ ++ A  +  +L  G Q+ A  +K+GF S++++ +  ID+
Sbjct: 185 QLRAIDLLGFLPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDM 244

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           ++KC +L  +  +F+ +   +      ++  +  +G     L LF  M      P EFTL
Sbjct: 245 YAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTL 304

Query: 351 SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
           S  L +        G Q H + +++GF+ + VVA+SL+ MY+K      +  +F  +  R
Sbjct: 305 SATLKACG-GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSR 363

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           +L +WN+++ G    G+  ++L VF E+       PD  T A++L AC+  G   +G  V
Sbjct: 364 NLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQV 423

Query: 470 FSAMKEEYGVMPGEEHY--ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            +AM    GV P         ++D+  +  +L  A+ +   +  +     W +++   A 
Sbjct: 424 HAAMAVR-GVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQ-WTTVIVGHAQ 481

Query: 528 YGDVK 532
            G VK
Sbjct: 482 EGQVK 486



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 39/200 (19%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F   +  K +H +  K        + N  +D+Y + G + +  + F E+P +N +SW   
Sbjct: 517 FALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAM 576

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQG 142
           + G+ K  +   A+ +F+E+     E D V++ +++S  +  G  D     FS++ Q + 
Sbjct: 577 INGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRR 636

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           +RP    +         AC                        ++D+ G+ G L  A  +
Sbjct: 637 MRPKAEHY---------AC------------------------MVDLLGRAGELREAKEL 663

Query: 203 FLNME-ELDIISWNSLISGC 221
            L+M  E  +  W +L+S C
Sbjct: 664 ILSMPMEPTVGVWQTLLSAC 683


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/603 (27%), Positives = 311/603 (51%), Gaps = 42/603 (6%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D  + +H    K G  +  ++ N  +++Y++ G  +D                     
Sbjct: 216 ALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVED--------------------- 254

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                     A  VF+ +   D+VSWN++++G         AL++F + +    + +  T
Sbjct: 255 ----------AKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 150 FSI---LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-LN 205
           ++    L + +      +Q+H  +++ G  L+  V+  +L D Y K G L  A  +F + 
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM-TALADAYSKCGELADALNIFSMT 363

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
               +++SW ++ISGC  +G   LA+  F  MR     P+E+T S ++ A   +      
Sbjct: 364 TGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP---- 419

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            Q+ A  +K  +     V +A +  +SK    ED++ +F+ +++ D    + M+S + + 
Sbjct: 420 PQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQA 479

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVV 383
           G  E A  LF  M  + I+P EFT+S V+ +   P   V+ G QFH+++IK  +     V
Sbjct: 480 GDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICV 539

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +S+L+ MY++ G+IDS+  +F +   RDLVSWN+++ G  Q+G + + ++ F ++   G+
Sbjct: 540 SSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGI 599

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D +T  AV++ C + G V +G   F +M  ++ + P  EHYAC++DL  +AG+L + +
Sbjct: 600 QMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETM 659

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +   MPF  G  +W ++L A  ++ +V+L +  A++++ L+      Y LL+  YA  G
Sbjct: 660 SLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAG 719

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +W+    V+K+M    + K  GCSWI IKN++++F A +  H    +IY  L+++   ++
Sbjct: 720 KWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLK 779

Query: 624 DEG 626
            +G
Sbjct: 780 QDG 782



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 200/371 (53%), Gaps = 10/371 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++   ++VF+ +P+ +VV+W S+++G A        + +F +M+ +G+ P+ FTF+
Sbjct: 146 MKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFA 205

Query: 152 ILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +LS V+S      G+++H   ++ G   S+V + NSL++MY K G++  A  VF  ME 
Sbjct: 206 SVLSAVASQGALDLGQRVHAQSVKFGCR-SSVFVCNSLMNMYAKCGLVEDAKSVFNWMET 264

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++SWN+L++G   +     AL  F+  R +     + T + VI  C  L+ L   +Q+
Sbjct: 265 RDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQL 324

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGF 327
            +  +K GF     V++A  D +SKC  L D++ +F         V    +IS   + G 
Sbjct: 325 HSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGD 384

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
             +A+ LF  M  + + P EFT S +L +S+ I P     Q H+  IK+ +     V ++
Sbjct: 385 IPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP----PQIHAQVIKTNYQHIPSVGTA 440

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+  Y+K GS + +  IF  ++++D+V+W+ ++    Q G       +F ++  +G+ P+
Sbjct: 441 LLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPN 500

Query: 447 RITLAAVLLAC 457
             T+++V+ AC
Sbjct: 501 EFTISSVIDAC 511



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 172/362 (47%), Gaps = 12/362 (3%)

Query: 104 FDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSS 159
            DEIP  D  V  N ++  YA  G     L+ FS  +  GV     T S +L    +V  
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              G+Q+H   ++ G     V  G SL+DMY K G +     VF  M + ++++W SL++
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           GC ++      +  F+ MR  G  P+ +T + V++A      LD G++V A SVK G  S
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS 234

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V ++ +++++KC  +ED+  +F  ++  D    N +++        E  LE  QL  
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG---LQLNECELEALQLFH 291

Query: 340 REDIRPTEFTLSCVLSSIP----IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
                  + T S   + I     +  +    Q HS  +K GF     V ++L + Y+K G
Sbjct: 292 ESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCG 351

Query: 396 SIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +  +  IF +    R++VSW  I+ G  QNG     + +F  + E+ + P+  T +A+L
Sbjct: 352 ELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411

Query: 455 LA 456
            A
Sbjct: 412 KA 413



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 183/402 (45%), Gaps = 37/402 (9%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A + K + S  + +I  C + K    A+ +H  + K GF+    +     D YS+ G  
Sbjct: 294 RATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGEL 353

Query: 67  DDVLQLFD-EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
            D L +F      +N +SW   + G +++           +IP                 
Sbjct: 354 ADALNIFSMTTGSRNVVSWTAIISGCIQN----------GDIP----------------- 386

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
                A+ +FS+M+   V P+ FT+S +L   S +    QIH  +I++       V G +
Sbjct: 387 ----LAVVLFSRMREDRVMPNEFTYSAMLKA-SLSILPPQIHAQVIKTNYQHIPSV-GTA 440

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           L+  Y K G    A  +F  +E+ D+++W++++S    +G  E A   F  M   G  P+
Sbjct: 441 LLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPN 500

Query: 246 EYTISIVINACT-KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           E+TIS VI+AC      +D+G+Q  A+S+K  +     V SA + ++S+   ++ +  +F
Sbjct: 501 EFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVF 560

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVE 363
           E+    D    N MIS Y ++G+   A+E F+ M    I+    T L+ ++       V 
Sbjct: 561 ERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVV 620

Query: 364 HGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            G Q F SM      +      + ++++Y++ G +D +  + 
Sbjct: 621 EGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 12/188 (6%)

Query: 296 RLEDSVRL---------FEQLDRWDYAV-INVMISTYGRYGFGEVALELFQLMLREDIRP 345
           R+ED V L          +++ R D AV  N ++  Y R G     L+ F +  R  +  
Sbjct: 38  RVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLV 97

Query: 346 TEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVA-SSLMEMYAKTGSIDSSTEI 403
              TLSCVL +   +P    G Q H + +K G D   V A +SL++MY K GS+    E+
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  + K+++V+W +++ G       +E + +F  +  EG+ P+  T A+VL A    G +
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 464 DKGMLVFS 471
           D G  V +
Sbjct: 218 DLGQRVHA 225


>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 515

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 264/497 (53%), Gaps = 37/497 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   ++   AK +H H+ K   N   +L N  ++ Y + G       LFD +PQ+N
Sbjct: 14  LLKFCCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRN 73

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             SWN  L    KS +L    ++F  +P  D VSWN+++SGYAS G    A++ ++ M  
Sbjct: 74  SFSWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMR 133

Query: 141 QGV-RPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            GV   +  TFS +L   SS      G+QIHG +++ G     V +G+ L+DMY K G++
Sbjct: 134 DGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFG-GYVFVGSPLVDMYAKTGLV 192

Query: 197 YYA------------------------FG-------VFLNMEELDIISWNSLISGCFNSG 225
           Y A                        FG       +F  M+E D ISW ++I+G   +G
Sbjct: 193 YEAKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNG 252

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
             E A+D F  MR  G   D+YT   V+ AC  L  L +GKQV A  ++     N  V S
Sbjct: 253 LEEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGS 312

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A +D++ KC  L  +  +F+++   +      ++  YG+ GF E A+++F  M R  I P
Sbjct: 313 ALVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGIEP 372

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
            +FTL  V+SS   +  +E G+QFH  A+ SG  S+  V+++L+ +Y K GSI+ S  +F
Sbjct: 373 DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLF 432

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            +++ RD VSW  ++ G  Q G+A ET+++FE +L  GL PD +T   VLLAC+  G V 
Sbjct: 433 NEMNFRDEVSWTALISGYAQFGKARETIELFERMLAHGLKPDAVTFIGVLLACSRAGLVA 492

Query: 465 KGMLVFSAMKEEYGVMP 481
           +G   F +M EEYG++P
Sbjct: 493 RGQQFFDSMLEEYGIIP 509


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/474 (32%), Positives = 272/474 (57%), Gaps = 5/474 (1%)

Query: 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           G R    T     + ++    GK IH  ++ S     ++V+ N+L+++Y K G L YA  
Sbjct: 13  GAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFR-DDLVMQNTLLNLYAKCGDLVYARK 71

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  M   D+++W +LI+G       + AL     M   G  P+++T++ ++ A + + +
Sbjct: 72  LFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGS 131

Query: 262 LD--KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            D  +G+Q+  L ++ G+ SN  V  A +D++++C+ LE++  +F+ +   +    N +I
Sbjct: 132 TDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALI 191

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           + Y R G G+ A  LF  MLRE+++PT FT S VL +   +  +E G   H++ IK G  
Sbjct: 192 AGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEK 251

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
             A V ++L++MYAK+GSI+ + ++F +L KRD+VSWN+++ G +Q+G     L  FEE+
Sbjct: 252 LVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEM 311

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           L   + P+ IT   VL AC++ G +D+G   F  MK+ Y V P   HY  ++DLL +AG 
Sbjct: 312 LRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGH 370

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L +AI   S MP +P  ++W ++L A  ++ +++L    AE + +L    P  + LL   
Sbjct: 371 LDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNI 430

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           YA+ GRW    +V+K+M+++G+ K   CSW+ ++N ++ F A +  H   ++I+
Sbjct: 431 YALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIH 484



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 191/403 (47%), Gaps = 38/403 (9%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N  +   C  L+ RC      +  K IH  L    F     + N  L+LY++ G      
Sbjct: 11  NAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCG------ 64

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                    +L  A K+FDE+   DVV+W ++I+GY+       
Sbjct: 65  -------------------------DLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQD 99

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVS-----SACHGKQIHGSMIRSGLSLSNVVLGNS 185
           AL +  +M   G++P+ FT + LL   S         G+Q+HG  +R G   SNV +  +
Sbjct: 100 ALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYD-SNVYVSCA 158

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           ++DMY +   L  A  +F  M   + +SWN+LI+G    G G+ A   F +M      P 
Sbjct: 159 ILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPT 218

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            +T S V+ AC  + +L++GK V AL +K G    + V +  +D+++K   +ED+ ++F+
Sbjct: 219 HFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFD 278

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEH 364
           +L + D    N M++ Y ++G G+VAL+ F+ MLR  I P + T  CVL++      ++ 
Sbjct: 279 RLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDE 338

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           G  +  M  K   +       +++++  + G +D + +   ++
Sbjct: 339 GRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEM 381



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 71/133 (53%)

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +EL +   + +    E   + +     +  +  G   H++ + S F  + V+ ++L+ +Y
Sbjct: 1   MELIRQQCKNNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLY 60

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +  + ++F ++  RD+V+W  ++ G +Q+ R  + L +  E+L  GL P++ TLA
Sbjct: 61  AKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLA 120

Query: 452 AVLLACNYGGFVD 464
           ++L A +  G  D
Sbjct: 121 SLLKAASGVGSTD 133


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 184/660 (27%), Positives = 315/660 (47%), Gaps = 79/660 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C         K++HG   K+G     ++GN  + LY + G  D+ ++LFD++P++N
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQN 275

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPE------PDVVSW------------------- 115
            ISWN  +RG  ++     A + F  + E      PDV +                    
Sbjct: 276 LISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVI 335

Query: 116 ----------------NSMISGYASCGYSDYALEMFSKMQLQGV----------RPSGFT 149
                           N++I  Y+ CG    A  +F K++ + V             GF 
Sbjct: 336 HGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFV 395

Query: 150 F-------------------SILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLG 183
           F                    + +  +  AC         + +HG  +R       ++  
Sbjct: 396 FETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELI-N 454

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N+ I  Y K G L +A  VF  M    + SWN++I G   +G    ALD ++ M   G  
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PD+++I  ++ AC +L  L  GK++    ++ G   NS V  + + L+  C++       
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPV 362
           FE++   +    N M+S Y +      AL LF+ ML + + P E  ++ +L +   +  +
Sbjct: 575 FERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G + H  A+K+    +  VA SLM+MYAK+G +  S  IF +L+ +++ SWN ++ G 
Sbjct: 635 GLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGF 694

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
             +G+  + +++FE++      PDR T   VL AC + G V +G+   + M+  Y + P 
Sbjct: 695 GVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPE 754

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            EHYAC+ID+L +AG+L +A++  + MP +P   IW S+L +S  Y D+++ E  AE+++
Sbjct: 755 LEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLL 814

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
            L+      Y LL+  YA  G+W+ +  V++ M+   + K  GCSWI ++ ++Y+F AGE
Sbjct: 815 ALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGE 874



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 221/479 (46%), Gaps = 48/479 (10%)

Query: 4   YLKKAHVNKASLSYCSQ------LIDRCLSFKSFDFAKTIHGHL-FKLGFNAHTYLGNRC 56
           +L++A  N A      +      L+ +C  +K+ +  + +   L     F+    L  R 
Sbjct: 90  FLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRL 149

Query: 57  LDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN 116
           + +YS  G   +   +FD +  KN   WN  + G ++++  D A+  F            
Sbjct: 150 ITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTF------------ 197

Query: 117 SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRS 173
                          LE+ S  + Q   P  FTF  L+   +  C    GK +HG  ++ 
Sbjct: 198 ---------------LELISVTEFQ---PDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM 239

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           GL + ++ +GN++I +YGK G L  A  +F  M E ++ISWNSLI G   +G+   A   
Sbjct: 240 GL-IMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRA 298

Query: 234 FYSMRYSGYS--PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           F S+  SG    PD  T+  ++  C+   N+D G  +  ++VK+G +   +V +A ID++
Sbjct: 299 FRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMY 358

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
           SKC  L ++  LF +++       N MI  Y R GF     +L + M  E+    E    
Sbjct: 359 SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEE-ELMEVNEV 417

Query: 352 CVLSSIPIPPVEHG----SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
            +L+ +P    E         H  +++  F    ++ ++ +  YAK GS+  +  +F  +
Sbjct: 418 TILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGM 477

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + + + SWN ++ G  QNG   + LD + E+   G+ PD  ++ ++LLAC   G +  G
Sbjct: 478 NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 153/301 (50%), Gaps = 11/301 (3%)

Query: 248 TISIVINACTKLRNLDKGKQV-FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            + +++  C + +N++ G+++   L V   F  + ++ +  I ++S C    +S  +F++
Sbjct: 109 AMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDR 168

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPPVEH- 364
           L   +    N ++S Y R    + A+  F +L+   + +P  FT  C++ +       H 
Sbjct: 169 LLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHL 228

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H MA+K G   +  V ++++ +Y K G +D + E+F K+ +++L+SWN+++ G ++
Sbjct: 229 GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSE 288

Query: 425 NGRAAETLDVFEELLE--EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
           NG   E    F  LLE  +GL PD  T+  +L  C+  G VD GM V   M  + G++  
Sbjct: 289 NGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLV-- 345

Query: 483 EEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
            E   C  +ID+  + G L +A  +   +  +   S W S++ A +  G V  T ++  +
Sbjct: 346 HELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVS-WNSMIGAYSREGFVFETFDLLRK 404

Query: 541 M 541
           M
Sbjct: 405 M 405


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/596 (28%), Positives = 304/596 (51%), Gaps = 37/596 (6%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + + IH HL K G     ++G+  +++Y+                               
Sbjct: 124 YGRRIHNHLLKTGLIWDVFVGSSLMNMYA------------------------------- 152

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D    A+K+FDE P+ DV  WN++IS Y   G ++ AL+ F KM+  G  P+  TF++
Sbjct: 153 KCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTV 212

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++S+ +   +   GK++H  +I   + L   VL ++L+DMYGK G L  A  VF  +   
Sbjct: 213 VVSSCTRLLNLERGKEVHRELIERRILLDAFVL-SALVDMYGKCGCLEMAKEVFEKIPRK 271

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + I+WN++I+G    G     ++    M   G  P   T++ +I A ++   L  GK + 
Sbjct: 272 NAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIH 331

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              ++     +  +  + ID + KC  +  +  +F  + + +    NVMIS +   G   
Sbjct: 332 GYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHI 391

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL ++  M    ++P   T S  LS+   +  ++ G + H   I    ++N +V  +L+
Sbjct: 392 QALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALL 451

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G +D + ++F +L KRDLVSW +++     +G+A+E L +F+E+ +  +  D +
Sbjct: 452 DMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSV 511

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI-TS 507
           T  AVL AC++ G VD+G + F+ M  +Y + PG EHY+C+IDLL +AG+L +A +I   
Sbjct: 512 TFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQR 571

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           +   +    +  ++  A  ++ +  L   + + ++++    P  Y LL+  YA   +W+ 
Sbjct: 572 SKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDE 631

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           + +V++ M++ G+ K  GCSWI I  RI+ F A +  +     +Y  L +L   ME
Sbjct: 632 VRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKSNPLADGVYECLNILGCHME 687



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 229/441 (51%), Gaps = 8/441 (1%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLST---VSSACHGKQI 166
           DV  WN+++S Y +      AL++F ++     VRP  +T+ ++L     +    +G++I
Sbjct: 69  DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRI 128

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H  ++++GL + +V +G+SL++MY K      A  +F    + D+  WN++IS  F  G 
Sbjct: 129 HNHLLKTGL-IWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGK 187

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E+AL  F  M+  G+ P+  T ++V+++CT+L NL++GK+V    ++   L ++ VLSA
Sbjct: 188 AEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSA 247

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D++ KC  LE +  +FE++ R +    N MI+ Y   G     +EL   M  E  +PT
Sbjct: 248 LVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPT 307

Query: 347 EFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
             TL+ ++ +S     + HG   H   +++  D +  +  SL++ Y K G + S+  IF 
Sbjct: 308 LMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFR 367

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
            + K ++VSWN ++ G    G   + L +++ + E  + PD +T ++ L AC+    +DK
Sbjct: 368 TISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDK 427

Query: 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525
           G  +   +   + +   E     ++D+  + G + +A  +   +P +   S W S++ A 
Sbjct: 428 GRELHYCII-NHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVS-WTSMIFAY 485

Query: 526 AIYGDVKLTENVAERMMDLQL 546
             +G       + + M  L +
Sbjct: 486 GSHGQASEALRLFDEMQKLNV 506



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 187/391 (47%), Gaps = 37/391 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    + +  K +H  L +       ++ +  +D+Y + G  +   ++F++IP+KN
Sbjct: 213 VVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKN 272

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I+W                               N+MI+GY+  G S   +E+  +M  
Sbjct: 273 AITW-------------------------------NAMITGYSLKGDSRSCIELLMRMND 301

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G +P+  T + ++   S +    HGK IHG ++R+ + + ++ +  SLID Y K G + 
Sbjct: 302 EGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV-DIFIDVSLIDFYFKCGYVS 360

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  + + +++SWN +ISG    G    AL  + +M+     PD  T S  ++AC+
Sbjct: 361 SAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACS 420

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +L  LDKG+++    +     +N IV+ A +D+++KC  ++++ +LF QL + D      
Sbjct: 421 QLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTS 480

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKS 375
           MI  YG +G    AL LF  M + ++R    T   VLS+      V+ G   F+ M ++ 
Sbjct: 481 MIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQY 540

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
                    S L+++  + G +  + EI  +
Sbjct: 541 DIKPGIEHYSCLIDLLGRAGRLHEAYEILQR 571



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 155/298 (52%), Gaps = 4/298 (1%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-LNMEELDIISWNSLISG 220
            GK IH  +   G   SN+VL  SLI  Y        A  VF  N   LD+  WN+L+S 
Sbjct: 21  QGKLIHQRIFSCGFQ-SNIVLSKSLIGFYFSCHDYASAELVFQTNDCPLDVSLWNALLSA 79

Query: 221 CFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
             N+     AL  F  +  + Y  PD YT  +V+ AC  L  +  G+++    +K G + 
Sbjct: 80  YTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIW 139

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +  V S+ +++++KC++  D+++LF++  + D    N +IS Y + G  E+AL+ F  M 
Sbjct: 140 DVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMK 199

Query: 340 REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                P   T + V+SS   +  +E G + H   I+     +A V S+L++MY K G ++
Sbjct: 200 ELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLE 259

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            + E+F K+ +++ ++WN ++ G +  G +   +++   + +EG  P  +TL +++ A
Sbjct: 260 MAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYA 317



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 152/320 (47%), Gaps = 8/320 (2%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D  T+   +  CT  + L +GK +       GF SN ++  + I  +  C+    +  +F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 305 EQLD-RWDYAVINVMISTY-GRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSI-PIP 360
           +  D   D ++ N ++S Y   + F E AL+LF QL     +RP  +T   VL +   + 
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVE-ALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            V +G + H+  +K+G   +  V SSLM MYAK      + ++F +  +RD+  WN ++ 
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
              ++G+A   L  F+++ E G  P+ +T   V+ +C     +++G  V   + E   ++
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIER-RIL 239

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
                 + ++D+  + G L  A ++   +P +   + W +++   ++ GD +    +  R
Sbjct: 240 LDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAIT-WNAMITGYSLKGDSRSCIELLMR 298

Query: 541 MMDLQLPSPLPYSLLTQAYA 560
           M D +   P   +L +  YA
Sbjct: 299 MND-EGTKPTLMTLTSIIYA 317



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 37/223 (16%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +K+ HV   +L++ S L   C    + D  + +H  +      A+  +    LD+Y++ G
Sbjct: 400 MKEHHVKPDALTFSSTL-SACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCG 458

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             D+  +LF ++P+++ +SW                                SMI  Y S
Sbjct: 459 DVDEARKLFHQLPKRDLVSW-------------------------------TSMIFAYGS 487

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G +  AL +F +MQ   VR    TF  +LS  S A     G      M+        + 
Sbjct: 488 HGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIE 547

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEEL--DIISWNSLISGCF 222
             + LID+ G+ G L+ A+ +    +E   DI   ++L S C 
Sbjct: 548 HYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACL 590


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 173/539 (32%), Positives = 275/539 (51%), Gaps = 5/539 (0%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L+   K  +L  A KVFDE+ E ++VSWN++IS YA  G  D    MFS M     +
Sbjct: 49  NSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETK 108

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+G T+   L ++   S    GKQIH   IRSGL  SN  +  ++ +MY K G L  A  
Sbjct: 109 PNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLG-SNASVNTAISNMYVKCGWLEGAEL 167

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M E + ++W  ++ G   +     AL  F  M   G   DEY  SIV+ AC  L  
Sbjct: 168 VFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEE 227

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ G+Q+    VK+G  S   V +  +D + KC+ LE + + FE +   +    + +I+ 
Sbjct: 228 LNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITG 287

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSN 380
           Y + G  E AL+ F+ +    +    FT + +  +   +     G+Q H+ AIKS   + 
Sbjct: 288 YCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAY 347

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
               S+++ MY++ G +D +T +F  +D  D V+W  I+ G    G A E L +F  + +
Sbjct: 348 QHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQD 407

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G+ P+ +T  AVL AC++ G V +G     +M   YGV    +HY C++D+  +AG L 
Sbjct: 408 CGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQ 467

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A+++  +MPF P    W+ +L     Y ++++ E  AE +  L       Y L+   YA
Sbjct: 468 EALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYA 527

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
             G+W+    V+K+M +  + K   CSWI +K +++ F  G+  H   ++IY  L  L 
Sbjct: 528 SFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALN 586



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 185/411 (45%), Gaps = 9/411 (2%)

Query: 138 MQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+  G+  S  ++  L      + S   G+  H  M R+ +      L NS++ MY K G
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRT-VKNPPEFLENSVLKMYCKCG 59

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A  VF  M E +++SWN++IS    +G  +     F +M      P+  T    + 
Sbjct: 60  SLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLR 119

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +      L+ GKQ+ + +++ G  SN+ V +A  +++ KC  LE +  +FE++   +   
Sbjct: 120 SLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVA 179

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
              ++  Y +      AL LF  M+ E +   E+  S VL +   +  +  G Q H   +
Sbjct: 180 WTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIV 239

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K G +S   V + L++ Y K  +++S+T+ F  + + + VSW+ ++ G  Q G   E L 
Sbjct: 240 KLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALK 299

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDL 492
            FE L    +  +  T  ++  AC+     + G    + A+K    ++  +   + +I +
Sbjct: 300 TFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS--SLVAYQHGESAMITM 357

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
             + G+L  A  +  ++   P    W +I+   A  G+      +  RM D
Sbjct: 358 YSRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGNAPEALKLFRRMQD 407



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 141/329 (42%), Gaps = 43/329 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +  +F + IHGH+ KLG  +   +G   +D Y +    +   + F+ I +
Sbjct: 216 SIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISE 275

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +SW+  + G                               Y   G  + AL+ F  +
Sbjct: 276 PNDVSWSALITG-------------------------------YCQMGEFEEALKTFESL 304

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNS-LIDMYGKLG 194
           + + V  + FT++ +    S+      G Q H   I+S  SL     G S +I MY + G
Sbjct: 305 RTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS--SLVAYQHGESAMITMYSRCG 362

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L YA  VF ++++ D ++W ++I+G    G    AL  F  M+  G  P+  T   V+ 
Sbjct: 363 RLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLT 422

Query: 255 ACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL----DR 309
           AC+    + +G+Q   ++S   G  +        +D++S+   L++++ L   +    D 
Sbjct: 423 ACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDA 482

Query: 310 WDYAVINVMISTYGRYGFGEVALE-LFQL 337
             +  +     TY     GE+A E LFQL
Sbjct: 483 MSWKCLLGGCWTYRNLEIGELAAENLFQL 511


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/573 (29%), Positives = 305/573 (53%), Gaps = 38/573 (6%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + IH ++ K G ++   +GN  +D+Y + G   D                         
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKD------------------------- 162

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                 + +VFDEI E + VSWN++I+  A    +  ALEMF  M   GV+P+  TFS +
Sbjct: 163 ------SRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSM 216

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L  +        GK+IHG  +R GL  S++ + N+LIDMY K G    A  VF  + E +
Sbjct: 217 LPVLVELKLFDFGKEIHGFSLRFGLE-SDIFVANALIDMYAKSGRSLQASNVFNQIGEKN 275

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           I+SWN++++    +     A+D    M+  G  P+  T + V+ AC ++  L  GK++ A
Sbjct: 276 IVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHA 335

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            +++ G   +  V +A  D+++KC  L  + R+F ++   D    N++I  Y +      
Sbjct: 336 RAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSE 394

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           +L LF  M  + ++    +   V+S+   +  ++ G + H +A++    ++  +A++L++
Sbjct: 395 SLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLD 454

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            Y K G ID + ++F ++  RD  SWN++++G    G     +++FE + E+G+  D ++
Sbjct: 455 FYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVS 514

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             AVL AC++GG V++G   F  M+ +  + P + HYAC++DLL +AG + +A+ +  ++
Sbjct: 515 YIAVLSACSHGGLVEEGKKYFEHMQVQ-NIKPTQMHYACMVDLLGRAGLIEEAVKLIESL 573

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +P  ++W ++L A  I+G ++L    AE +  L+      YS+L+  YA  G+W+   
Sbjct: 574 PIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEAN 633

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           +V+K+M+  G  K  GCSW+ I N+++ F AGE
Sbjct: 634 QVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGE 666



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/534 (26%), Positives = 261/534 (48%), Gaps = 52/534 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    S    + IHG +FKLGF++  ++GN  L  Y   G   DV           
Sbjct: 13  VLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVK---------- 62

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                +VFDE+ E DVVSWNS+I  ++  G+   A+ +F +M L
Sbjct: 63  ---------------------RVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNL 101

Query: 141 Q-GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           + G RP+  +   +L   + +     G+QIH  ++++GL  S V +GN+L+D+YGK G +
Sbjct: 102 RSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLD-SQVTVGNALVDVYGKCGYV 160

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  VF  + E + +SWN++I+        + AL+ F  M   G  P+  T S ++   
Sbjct: 161 KDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVL 220

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +L+  D GK++   S++ G  S+  V +A ID+++K  R   +  +F Q+   +    N
Sbjct: 221 VELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWN 280

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            M++ + +      A++L + M  +   P   T + VL +   I  +  G + H+ AI++
Sbjct: 281 AMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRT 340

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G   +  V+++L +MYAK G ++ +  +F K+  RD VS+N +++G +Q    +E+L +F
Sbjct: 341 GSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLF 399

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA------CI 489
            E+  +G+  D ++   V+ AC     + +G       KE +G+   +  +        +
Sbjct: 400 LEMGIKGMKLDVVSYMGVISACANLAALKQG-------KEVHGLAVRKHLHTHLFIANAL 452

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           +D   + G++  A  +   +P +   S W S++    + G++ +  N+ E M +
Sbjct: 453 LDFYIKCGRIDLAGKVFRQIPSRDTAS-WNSMILGYGMLGELTIAINLFEAMKE 505



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 142 GVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           GVR    TF  +L   +   S   G++IHG + + G   S+V +GN+L+  YG  G L  
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFD-SDVFVGNTLLLFYGNCGGLKD 60

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACT 257
              VF  M E D++SWNS+I      G+   A+  F  M   SG+ P+  +I  V+  C 
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +   G+Q+    VK G  S   V +A +D++ KC  ++DS R+F+++   +    N 
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSG 376
           +I++       + ALE+F+LM+   ++P   T S +L   + +   + G + H  +++ G
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            +S+  VA++L++MYAK+G    ++ +F ++ ++++VSWN ++    QN      +D+  
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVR 300

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           ++  +G  P+ +T   VL AC   GF+  G
Sbjct: 301 QMQADGEIPNSVTFTNVLPACARIGFLRPG 330



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 231/539 (42%), Gaps = 94/539 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++   +  K FDF K IHG   + G  +  ++ N  +D+Y++ G S     +F++I +
Sbjct: 214 SSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGE 273

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                               +VSWN+M++ +A       A+++  +M
Sbjct: 274 KN-------------------------------IVSWNAMVANFAQNRLELAAVDLVRQM 302

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G  P+  TF+ +L   +       GK+IH   IR+G S+ ++ + N+L DMY K G 
Sbjct: 303 QADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSV-DLFVSNALTDMYAKCGC 361

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  VF  +   D +S+N LI G   +     +L  F  M   G   D  +   VI+A
Sbjct: 362 LNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISA 420

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L +GK+V  L+V+    ++  + +A +D + KC R++ + ++F Q+   D A  
Sbjct: 421 CANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASW 480

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N MI  YG  G   +A+ LF+ M  + +     +   VLS+      VE G ++      
Sbjct: 481 NSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQV 540

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
                  +  + ++++  + G I+ + ++                               
Sbjct: 541 QNIKPTQMHYACMVDLLGRAGLIEEAVKLI------------------------------ 570

Query: 435 FEELLEEGLP--PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE-HYACIID 491
                 E LP  PD     A+L AC   G+++   L   A +  + + P    +Y+ + +
Sbjct: 571 ------ESLPIEPDANVWGALLGACRIHGYIE---LAHWAAEHLFKLKPQHSGYYSVLSN 621

Query: 492 LLCQAGQLGKAIDITSTMPFQ-----PGCSIWESILRASAIYGDVKLTENVA-ERMMDL 544
           +  +AG+  +A  +   M  +     PGCS W  I        D ++   VA ERMM++
Sbjct: 622 MYAEAGKWDEANQVRKLMKSRGAKKNPGCS-WVQI--------DNQVHAFVAGERMMNV 671


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 188/619 (30%), Positives = 316/619 (51%), Gaps = 46/619 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I       S +  K IH  + KL F +  Y+ N  + LY + G S D            
Sbjct: 132 VIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWD------------ 179

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A KVF+E+PE D+VSWNSMISGY +      +L +F +M  
Sbjct: 180 -------------------AEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLK 220

Query: 141 QGVRPSGF-TFSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G +P  F T S L   S V S   GK++H   +RS +   +V++  S++DMY K G + 
Sbjct: 221 FGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVS 280

Query: 198 YAFGVFLNMEELDIISWNSLISGCF--NSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           YA  +F  + + +I++WN LI GC+  NS   +  L        +G  PD  T+  ++ A
Sbjct: 281 YAERIFKCIIQRNIVAWNVLI-GCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPA 339

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L    +G+ +   +++ GFL + ++ +A ID++ +  +L+ +  +F+++   +    
Sbjct: 340 CAIL----EGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISW 395

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIK 374
           N +I+ Y + G    ALELFQ +    + P   T++ +L +      +  G Q H+  +K
Sbjct: 396 NSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVK 455

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S + SN ++ +SL+ MYA  G ++ + + F  +  +D+VSWN+I+M    +G    ++ +
Sbjct: 456 SRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCL 515

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F E++   + P++ T A++L AC+  G VD+G   F +MK EYG+ PG EHY  ++DL+ 
Sbjct: 516 FSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIG 575

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G    A      MPF P   IW S+L AS  + D+ + E  AE++  ++  +   Y L
Sbjct: 576 RTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVL 635

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L   YA   RWE + R+K +M   GI++ +  S +  K++ +    G+  H    KIY V
Sbjct: 636 LLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEV 695

Query: 615 L----RLLTWEMEDEGCVY 629
           L    R++  E E++  V+
Sbjct: 696 LDIVSRMIGEEEEEDSYVH 714



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 155/568 (27%), Positives = 283/568 (49%), Gaps = 27/568 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL--QLFDEI 76
           + L+ RC    + D  K +           H   G R L+  SRF     ++    +   
Sbjct: 3   ATLLSRCYRIYNCDACKCVSSE-------NHQTTGKRSLEFDSRFSKPVRLVLRDRYKVT 55

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            Q N  +    LRG   S  ++ AL++FDE+ + D   WN MI G+ SCG    AL+++ 
Sbjct: 56  KQLNDPALTRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYC 115

Query: 137 KMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M   GV+   FT+  ++ +V   SS   GK+IH  +I+    +S+V + NSLI +Y KL
Sbjct: 116 RMVFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRF-VSDVYVCNSLISLYMKL 174

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G  + A  VF  M E DI+SWNS+ISG      G  +L  F  M   G+ PD ++    +
Sbjct: 175 GCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSAL 234

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
            AC+ + + + GK++   +V+    +  + V+++ +D++SK   +  + R+F+ + + + 
Sbjct: 235 GACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNI 294

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSM 371
              NV+I  Y R      A   FQ M  ++ ++P   TL   ++ +P   +  G   H  
Sbjct: 295 VAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITL---INLLPACAILEGRTIHGY 351

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A++ GF  + V+ ++L++MY + G + S+  IF ++ +++L+SWN+I+    QNG+    
Sbjct: 352 AMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSA 411

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACII 490
           L++F++L +  L PD  T+A++L A      + +G  + +  +K  YG          ++
Sbjct: 412 LELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYG--SNTIILNSLV 469

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSP 549
            +    G L  A    + +  +   S W SI+ A A++G  +++  +   M+  ++ P+ 
Sbjct: 470 HMYAMCGDLEDARKCFNHVLLKDVVS-WNSIIMAYAVHGFGRISVCLFSEMIASKVDPNK 528

Query: 550 LPYSLLTQAYAMRGR----WEAIVRVKK 573
             ++ L  A ++ G     WE    +K+
Sbjct: 529 STFASLLAACSISGMVDEGWEYFESMKR 556


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/530 (30%), Positives = 281/530 (53%), Gaps = 5/530 (0%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           VF ++ EP++  WN+MI G  S    D A+ ++  M+  G  P+ FT   +L   +    
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 163 ---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              G +IH  ++++G    +V +  SL+ +Y K      A  VF ++ + +++SW ++I+
Sbjct: 130 VRLGLKIHSLLVKAGYD-HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G  +SG+   A+  F  +   G  PD +++  V+ AC +L +   G+ +       G   
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGR 248

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           N  V ++ +D++ KC  LE +  +F  +   D    + MI  Y   G  + AL+LF  M 
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 340 REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            E+++P  +T+  VLS+   +  ++ G    S+  ++ F SN V+ ++L++MY+K GS+ 
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVT 368

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + EIF  + K+D V WN +M+GL+ NG A     +F  + + G+ PD  T   +L  C 
Sbjct: 369 QAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           +GGFV++G   F+ MK  + + P  EHY C++DLL +AG L +A  + + MP +P   +W
Sbjct: 429 HGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVW 488

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            ++L    ++ D  L E V +++++L+  +   Y  L+  Y+   RWE   +++  M++ 
Sbjct: 489 GALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            I K+  CSWI I   ++ F  G+  H   +KIY  L  L  E++  G V
Sbjct: 549 QIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 180/356 (50%), Gaps = 9/356 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K DN D ALKVFD+IP+ +VVSW ++I+GY S G+   A+  F K+   G++P  F+  
Sbjct: 160 VKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLV 219

Query: 152 ILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L+    +     G+ I   +  SG+   NV +  SL+DMY K G L  A  +F  M E
Sbjct: 220 KVLAACARLGDCTSGEWIDRYISDSGMG-RNVFVATSLLDMYVKCGNLERANLIFSAMPE 278

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            DI+SW+++I G   +G  + ALD F+ M+     PD YT+  V++AC  L  LD G   
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            +L  +  FLSN ++ +A ID++SKC  +  +  +F  + + D  V N M+      G  
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHA 398

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA--S 385
           +    LF L+ +  IRP E T   +L        V  G QF +  +K  F     +    
Sbjct: 399 KAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYG 457

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            ++++  + G ++ + ++   +  K + V W  ++ G   +        V ++L+E
Sbjct: 458 CMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIE 513



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 189/371 (50%), Gaps = 6/371 (1%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K IH  ++R  L   N +L N ++      G   Y+  VF  ++E +I  WN++I G  +
Sbjct: 33  KHIHARLLRLHLDQDNYLL-NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
               + A+  + SMR  G+ P+ +TI  V+ AC +  ++  G ++ +L VK G+  +  V
Sbjct: 92  KDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFV 151

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            ++ + L+ KC+  +D++++F+ +   +      +I+ Y   G    A+  F+ +L   +
Sbjct: 152 KTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGL 211

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +P  F+L  VL++   +     G         SG   N  VA+SL++MY K G+++ +  
Sbjct: 212 KPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANL 271

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           IF  + ++D+VSW+T++ G   NG   + LD+F ++  E L PD  T+  VL AC   G 
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 463 VDKGMLVFSAM-KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
           +D G+   S M + E+   P       +ID+  + G + +A +I + M  +    +W ++
Sbjct: 332 LDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAM 388

Query: 522 LRASAIYGDVK 532
           +   ++ G  K
Sbjct: 389 MVGLSMNGHAK 399



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 35/180 (19%)

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F ++  LG   +D+YS+ G+     ++F                         TA+K   
Sbjct: 347 FLSNPVLGTALIDMYSKCGSVTQAWEIF-------------------------TAMK--- 378

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH 162
              + D V WN+M+ G +  G++     +FS ++  G+RP   TF  LL   +       
Sbjct: 379 ---KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNE 435

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           G+Q   +M R      ++     ++D+ G+ G+L  A  +  NM  + + + W +L+ GC
Sbjct: 436 GRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGC 495


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 267/467 (57%), Gaps = 3/467 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK +H  ++ S     ++V+ NSL+ MY + G L  A  +F  M   D++SW S+I+G  
Sbjct: 93  GKLVHFHVLNSNFK-HDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYA 151

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     AL  F  M   G  P+E+T+S ++  C  + + + G+Q+ A   K G  SN  
Sbjct: 152 QNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVF 211

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D++++C  L +++ +F++L   +    N +I+ Y R G GE AL LF  M RE 
Sbjct: 212 VGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREG 271

Query: 343 IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
            RPTEFT S +LSS   +  +E G   H+  +KS       V ++L+ MYAK+GSI  + 
Sbjct: 272 YRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAE 331

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           ++F KL K D+VS N++++G  Q+G   E    F+E++  G+ P+ IT  +VL AC++  
Sbjct: 332 KVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHAR 391

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   F  M+ +Y + P   HYA I+DLL +AG L +A      MP +P  +IW ++
Sbjct: 392 LLDEGKHYFGLMR-KYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGAL 450

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L AS ++ + ++    A+R+ +L    P  ++LL   YA  GRWE + +V+K+M+ +G+ 
Sbjct: 451 LGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVK 510

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           K   CSW+ ++N ++ F A ++ H   +KI+ +   L  ++++ G V
Sbjct: 511 KEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYV 557



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 210/447 (46%), Gaps = 53/447 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+ RC         K +H H+    F     + N  L +Y+R G+               
Sbjct: 80  LLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGS--------------- 124

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           L+ A ++FDE+P  D+VSW SMI+GYA    +  AL +F +M  
Sbjct: 125 ----------------LEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLS 168

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+ FT S L+     ++S   G+QIH    + G   SNV +G+SL+DMY + G L 
Sbjct: 169 DGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCH-SNVFVGSSLVDMYARCGYLG 227

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   + +SWN+LI+G    G GE AL  F  M+  GY P E+T S ++++C+
Sbjct: 228 EAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCS 287

Query: 258 KLRNLDKGKQVFALSVK-----VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
            +  L++GK + A  +K     VG++ N++     + +++K   + D+ ++F++L + D 
Sbjct: 288 SMGCLEQGKWLHAHLMKSSQKLVGYVGNTL-----LHMYAKSGSIRDAEKVFDKLVKVDV 342

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSM 371
              N M+  Y ++G G+ A + F  M+R  I P + T   VL++      ++ G  +  +
Sbjct: 343 VSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGL 402

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE- 430
             K   +      ++++++  + G +D +     ++     V+    ++G ++  +  E 
Sbjct: 403 MRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEM 462

Query: 431 ----TLDVFEELLEEGLPPDRITLAAV 453
                  VFE  L+   P     LA +
Sbjct: 463 GAYAAQRVFE--LDPSYPGTHTLLANI 487



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 35/292 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C    S++  + IH   +K G +++ ++G+  +D+Y+R G   + + +FD++  
Sbjct: 179 SSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGC 238

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +SWN                               ++I+GYA  G  + AL +F +M
Sbjct: 239 KNEVSWN-------------------------------ALIAGYARKGEGEEALALFVRM 267

Query: 139 QLQGVRPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +G RP+ FT+S LLS+ SS  C   GK +H  +++S   L   V GN+L+ MY K G 
Sbjct: 268 QREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYV-GNTLLHMYAKSGS 326

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  + ++D++S NS++ G    G G+ A  QF  M   G  P++ T   V+ A
Sbjct: 327 IRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTA 386

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+  R LD+GK  F L  K          +  +DL  +   L+ +    E++
Sbjct: 387 CSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEM 438



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 126/257 (49%), Gaps = 4/257 (1%)

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +I   +L+    NS  G   LD    +      PD    + ++  CT+L  L +GK V  
Sbjct: 42  VIDDRNLLRPSLNSKTGLHVLDL---IDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHF 98

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             +   F  + ++ ++ + ++++C  LE + RLF+++   D      MI+ Y +      
Sbjct: 99  HVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASD 158

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           AL LF  ML +   P EFTLS ++     +     G Q H+   K G  SN  V SSL++
Sbjct: 159 ALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVD 218

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYA+ G +  +  +F KL  ++ VSWN ++ G  + G   E L +F  +  EG  P   T
Sbjct: 219 MYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFT 278

Query: 450 LAAVLLACNYGGFVDKG 466
            +A+L +C+  G +++G
Sbjct: 279 YSALLSSCSSMGCLEQG 295



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 16/296 (5%)

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI---NVMISTYGRYGFGEVALELFQ 336
           +S VL + + + S C R   S R   Q     + VI   N++  +       +  L +  
Sbjct: 8   SSSVLKSLLQIVSPCKRDLGSFRRLWQHSESTFCVIDDRNLLRPSLN----SKTGLHVLD 63

Query: 337 LMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           L+    + P     + +L     +  ++ G   H   + S F  + V+ +SL+ MYA+ G
Sbjct: 64  LIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG 123

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S++ +  +F ++  RD+VSW +++ G  QN RA++ L +F  +L +G  P+  TL++++ 
Sbjct: 124 SLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVK 183

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
            C Y    + G  +  A   +YG        + ++D+  + G LG+A+ +   +  +   
Sbjct: 184 CCGYMASYNCGRQIH-ACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEV 242

Query: 516 SIWESILRASAIYGDVKLTENVAERMM-DLQLPSPLPYS-LLTQAYAM----RGRW 565
           S W +++   A  G+ +    +  RM  +   P+   YS LL+   +M    +G+W
Sbjct: 243 S-WNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKW 297


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/604 (29%), Positives = 310/604 (51%), Gaps = 42/604 (6%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           F   + +H  + K+G+  + Y G+  LD+Y+                             
Sbjct: 115 FHLGQQVHSIIIKMGYAENVYAGSALLDMYA----------------------------- 145

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
             K + L+ A   F  I + + VSWN+MI+GYA  G  + A  +   M+ +G +    T+
Sbjct: 146 --KCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTY 203

Query: 151 SILLSTVSSA--CH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LL  +  A  C+   Q+HG +I+ GL L N  + N+LI  Y K G L  A  +F +  
Sbjct: 204 APLLPLLDDADFCNLTSQLHGKIIKHGLELVNT-MCNALITSYSKCGSLDDAKRIFDSSA 262

Query: 208 EL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D+++WNSL++        +LA      M+  G+ PD Y+ + +I+AC      + G+
Sbjct: 263 GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGR 322

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCN--RLEDSVRLFEQLDRWDYAVINVMISTYGR 324
            +  L +K GF  +  + +A I ++ K +   +++++ +FE L+  D    N +++   +
Sbjct: 323 SLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQ 382

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  E A++ F  M    +    ++ S VL S   +   + G Q H +A+K G +SN  V
Sbjct: 383 TGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFV 442

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +SSL+ MY+K G I+ +   F +  K   ++WN +M G  Q+G+    LD+F  +  + +
Sbjct: 443 SSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKV 502

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D IT  AVL AC++ G V++G      M+ +YGV P  EHYAC +DL  ++G+L +A 
Sbjct: 503 KMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAK 562

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +   MPF+P  ++W++ L A    G+++L   VA  +++++      Y LL+  Y    
Sbjct: 563 ALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLM 622

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE-- 621
           RW+   +VK++M++ G+ KV G SWI + N ++ F A +  H   Q+IY +L +L  E  
Sbjct: 623 RWDEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLEEIT 682

Query: 622 -MED 624
            MED
Sbjct: 683 RMED 686



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 194/381 (50%), Gaps = 8/381 (2%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L G  K   L +A  +FDE+P  D VSWN+MI+G+ +CG  + + ++   M+  G  
Sbjct: 37  NNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFE 96

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              +TF  +L  ++ A     G+Q+H  +I+ G +  NV  G++L+DMY K   L  A+ 
Sbjct: 97  LDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYA-ENVYAGSALLDMYAKCEKLEDAYL 155

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            FL++ + + +SWN++I+G   +G  E A      M   G   D+ T + ++        
Sbjct: 156 SFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADF 215

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE-QLDRWDYAVINVMIS 320
            +   Q+    +K G    + + +A I  +SKC  L+D+ R+F+      D    N +++
Sbjct: 216 CNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLA 275

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDS 379
            Y      ++A +L   M      P  ++ + ++S+     +  +G   H + IK GF+ 
Sbjct: 276 AYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQ 335

Query: 380 NAVVASSLMEMYAKT--GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           +  ++++L+ MY K+  GS+  +  IF  L+ +D VSWN+I+ GL+Q G + + +  F  
Sbjct: 336 SVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLH 395

Query: 438 LLEEGLPPDRITLAAVLLACN 458
           +    +  D  + +AVL +C+
Sbjct: 396 MRSAAMDIDHYSFSAVLRSCS 416



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 15/299 (5%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H   ++ G ++++V   N++++ Y K   L  A  +F  M   D +SWN++I+G  N G 
Sbjct: 21  HSLAVKLG-TIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGN 79

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E + D    MR  G+  D YT   ++           G+QV ++ +K+G+  N    SA
Sbjct: 80  LEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSA 139

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            +D+++KC +LED+   F  + + +    N MI+ Y + G  E A  L   M +E  +  
Sbjct: 140 LLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVD 199

Query: 347 EFTLSCVLSSIPIPPV-------EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           + T +      P+ P+          SQ H   IK G +    + ++L+  Y+K GS+D 
Sbjct: 200 DGTYA------PLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDD 253

Query: 400 STEIF-VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           +  IF      RDLV+WN+++       +      +  ++ E G  PD  +  +++ AC
Sbjct: 254 AKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISAC 312


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/582 (29%), Positives = 292/582 (50%), Gaps = 22/582 (3%)

Query: 65  TSDDVLQLFDEIPQKNC----------------ISWNICLRGLLKSDNLDTALKVFDEIP 108
           T+  VLQ+  E+ Q N                 I  N  L    K   +D+AL+VF EI 
Sbjct: 268 TTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREID 327

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQ 165
           E D +SWNSM+S Y   G    A+E  S+M   G +P       L S V       +GK+
Sbjct: 328 EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKE 387

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +H   I+  L  S+  +GN+L+DMY K   + Y+  VF  M   D ISW ++I+    S 
Sbjct: 388 VHAYAIKQRLD-SDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSS 446

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
               AL+ F   +  G   D   I  ++ AC+ L  +   KQ+   +++ G L + +V +
Sbjct: 447 RHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL-DLVVKN 505

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
             ID++ +C  +  S+++FE +++ D      MI+ Y   G    AL LF  M   D++P
Sbjct: 506 RIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQP 565

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
               L  +L +I  +  +  G + H   I+  F     + SSL++MY+  GS+  + ++F
Sbjct: 566 DSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVF 625

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             +  +D+V W  ++     +G   + +D+F+ +L+ G+ PD ++  A+L AC++   V+
Sbjct: 626 NAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVN 685

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +G      M   Y + P +EHYAC++DLL ++GQ  +A +   +MP +P   +W S+L A
Sbjct: 686 EGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGA 745

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
             ++ + +L    A R+++L+  +P  Y L++  +A  G+W     V+  + + G+ K  
Sbjct: 746 CRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDP 805

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            CSWI I N ++TF   +  H   ++I L L  +T  +  EG
Sbjct: 806 ACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEG 847



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 202/374 (54%), Gaps = 10/374 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ---GVRPSGFT 149
           K   +  A  +FD +    V SWN++I  Y S G +  AL ++  M+L    GV P G T
Sbjct: 107 KCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCT 166

Query: 150 FSILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            + +L        G+   ++HG  ++ GL  S  V  N+LI MY K G+L  A  VF  M
Sbjct: 167 LASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFV-ANALIAMYAKCGILDSAMRVFELM 225

Query: 207 EE-LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            +  D+ SWNS+ISGC  +G    ALD F  M+ +  S + YT   V+  CT+L  L+ G
Sbjct: 226 HDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLG 285

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +++ A  +K G   N I  +A + +++KC R++ ++R+F ++D  DY   N M+S Y + 
Sbjct: 286 RELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQN 344

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G    A+E    MLR   +P    +  + S++  +  + +G + H+ AIK   DS+  V 
Sbjct: 345 GLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVG 404

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++LM+MY K   I+ S  +F ++  +D +SW TI+    Q+ R  E L++F E  +EG+ 
Sbjct: 405 NTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIK 464

Query: 445 PDRITLAAVLLACN 458
            D + + ++L AC+
Sbjct: 465 VDPMMIGSILEACS 478



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 172/331 (51%), Gaps = 8/331 (2%)

Query: 153 LLSTVSSACHGKQIHGSMIRSG-LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           L++   +   G Q+H   + +G L   +  L   L+ MYGK G +  A  +F  M    +
Sbjct: 67  LVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTV 126

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRY---SGYSPDEYTISIVINACTKLRNLDKGKQV 268
            SWN+LI    +SG    AL  + +MR    SG +PD  T++ V+ A     +   G +V
Sbjct: 127 FSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEV 186

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGF 327
             L+VK G   ++ V +A I +++KC  L+ ++R+FE + D  D A  N MIS   + G 
Sbjct: 187 HGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGM 246

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
              AL+LF+ M R  +    +T   VL     +  +  G + H+  +KSG + N +  ++
Sbjct: 247 FLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN-IQCNA 305

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MY K G +DS+  +F ++D++D +SWN+++    QNG  AE ++   E+L  G  PD
Sbjct: 306 LLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPD 365

Query: 447 RITLAAVLLACNYGGFVDKGMLVFS-AMKEE 476
              + ++  A  + G++  G  V + A+K+ 
Sbjct: 366 HACIVSLSSAVGHLGWLLNGKEVHAYAIKQR 396



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/495 (22%), Positives = 219/495 (44%), Gaps = 83/495 (16%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +H +  K   ++ T +GN  +D+Y                               +K
Sbjct: 385 GKEVHAYAIKQRLDSDTQVGNTLMDMY-------------------------------MK 413

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              ++ +  VFD +   D +SW ++I+ YA       ALE+F + Q +G++       ++
Sbjct: 414 CRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVD----PMM 469

Query: 154 LSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           + ++  AC G       KQ+H   IR+G  L ++V+ N +ID+YG+ G +Y++  +F  +
Sbjct: 470 IGSILEACSGLETILLAKQLHCYAIRNG--LLDLVVKNRIIDIYGECGEVYHSLKMFETV 527

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           E+ DI++W S+I+   NSG    AL  F  M+ +   PD   +  ++ A   L +L KGK
Sbjct: 528 EQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGK 587

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           +V    ++  F     ++S+ +D++S C  L  ++++F  +   D  +   MI+  G +G
Sbjct: 588 EVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHG 647

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            G+ A++LF+ ML+  + P   +   +L +            HS  +  G          
Sbjct: 648 HGKQAIDLFKRMLQTGVTPDHVSFLALLYACS----------HSKLVNEG--------KC 689

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
            ++M   T  ++   E +  +   DL+            GR+ +T + +E +    L P 
Sbjct: 690 YLDMMMSTYRLEPWQEHYACV--VDLL------------GRSGQTEEAYEFIKSMPLKPK 735

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +   ++L AC      +  ++  + + E     PG  +Y  + ++  + G+   A ++ 
Sbjct: 736 SVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPG--NYVLVSNVFAEMGKWNNAKEVR 793

Query: 507 STMPFQ-----PGCS 516
           + +  +     P CS
Sbjct: 794 ARISERGLRKDPACS 808



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 36/249 (14%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C   ++   AK +H +  + G      + NR +D+Y   G     L++F+ + QK+
Sbjct: 473 ILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKD 531

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ++W                                SMI+ YA+ G  + AL +F++MQ 
Sbjct: 532 IVTW-------------------------------TSMINCYANSGLLNEALVLFAEMQS 560

Query: 141 QGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V+P       +L  +   SS   GK++HG +IR    +   ++ +SL+DMY   G L 
Sbjct: 561 TDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIV-SSLVDMYSGCGSLS 619

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  ++  D++ W ++I+     G+G+ A+D F  M  +G +PD  +   ++ AC+
Sbjct: 620 GALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACS 679

Query: 258 KLRNLDKGK 266
             + +++GK
Sbjct: 680 HSKLVNEGK 688


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/554 (30%), Positives = 302/554 (54%), Gaps = 16/554 (2%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTFSILLS 155
           +D A ++FD   E +   WN+MI GY        A+++F + M+ +       TF   L+
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALT 330

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +S       G+Q+H  +++S   L  V+L N++I MY + G +  +F VF NM E D++
Sbjct: 331 AISQLQWLDLGRQLHAYILKSSTILQVVIL-NAIIVMYSRCGSIGTSFKVFSNMLERDVV 389

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +WN+++S    +G  +  L   + M+  G+  D  T++ +++  + LR+ + GKQ  A  
Sbjct: 390 TWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYL 449

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ---LDRWDYAVINVMISTYGRYGFGE 329
           ++ G     +     ID+++K   +  + +LFE+    DR D A  N MI+ Y + G  E
Sbjct: 450 IRHGIQFEGMD-GYLIDMYAKSGLITTAQQLFEKNSXYDR-DEATWNAMIAGYTQNGLSE 507

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
               +F+ M+ +++RP   TL+ +L +  P+  +  G Q H  AI+   + N  V ++L+
Sbjct: 508 EGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALL 567

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K+G+I  +  +F +  +++ V++ T+++   Q+G     L +F  +L  G+ PD +
Sbjct: 568 DMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSV 627

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A+L AC+Y G VD+G+ +F +M+ EY + P  EHY C+ D+L + G++ +A +    
Sbjct: 628 TFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKG 687

Query: 509 MPFQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--YSLLTQAYAMRGRW 565
           +  +     IW S+L A  I+G+ +L + VA ++++++  S L   + LL+  YA  G W
Sbjct: 688 LGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNW 747

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           + + RV+K MR+ G+ K  GCSW+ +   +  F + + +H    +IY +L  L  EM+D 
Sbjct: 748 DNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDA 807

Query: 626 GCVYLECDKLDVEG 639
           G  Y  C  L   G
Sbjct: 808 G--YKPCLNLQTGG 819



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 218/456 (47%), Gaps = 27/456 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C   +S    K +H H+ +  F +   + N  L++YS             E+P 
Sbjct: 108 SSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYS---------TCLTEVPY 158

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                    L      +N D   +VFD + + +VV+WN+MIS Y        A +MF  M
Sbjct: 159 ---------LGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTM 209

Query: 139 QLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLS-LSNVVLGNSLIDMYGKLG 194
              G+RP+  +F  +   V   +   +   ++G +++ G   + +  + +S I MY +LG
Sbjct: 210 MRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELG 269

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVI 253
            + +A  +F    E +   WN++I G   +     A+D F   M    +  D+ T    +
Sbjct: 270 CVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSAL 329

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            A ++L+ LD G+Q+ A  +K   +   ++L+A I ++S+C  +  S ++F  +   D  
Sbjct: 330 TAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVV 389

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMA 372
             N M+S + + G  +  L L   M ++       TL+ +LS +  +   E G Q H+  
Sbjct: 390 TWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYL 449

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAE 430
           I+ G      +   L++MYAK+G I ++ ++F K     RD  +WN ++ G TQNG + E
Sbjct: 450 IRHGIQFEG-MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEE 508

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
              VF +++E+ + P+ +TLA++L ACN  G +  G
Sbjct: 509 GFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG 544



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 10/321 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +  ++ T+ KVF  + E DVV+WN+M+S +   G  D  L +  +MQ QG      T + 
Sbjct: 369 RCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTA 428

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL--NME 207
           LLS  S   S   GKQ H  +IR G+      +   LIDMY K G++  A  +F   +  
Sbjct: 429 LLSLASNLRSQEIGKQAHAYLIRHGIQFEG--MDGYLIDMYAKSGLITTAQQLFEKNSXY 486

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + D  +WN++I+G   +G  E     F  M      P+  T++ ++ AC  +  +  GKQ
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ 546

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +   +++     N  V +A +D++SK   +  +  +F +    +      MI +YG++G 
Sbjct: 547 IHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGM 606

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVAS 385
           GE AL LF  ML   I+P   T   +LS+      V+ G + F SM  +     ++    
Sbjct: 607 GERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYC 666

Query: 386 SLMEMYAKTGSIDSSTEIFVK 406
            + +M  + G +  + E FVK
Sbjct: 667 CVADMLGRVGRVXEAYE-FVK 686



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 193/396 (48%), Gaps = 29/396 (7%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS- 146
           L  L +  +   AL +FD IP P  V WN++I G+        AL  +++M+     PS 
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMR---ASPSP 100

Query: 147 ---GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-------L 193
               +TFS  L   + A     GK +H  ++RS    S +V  NSL++MY         L
Sbjct: 101 KFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVY-NSLLNMYSTCLTEVPYL 159

Query: 194 GVLY------YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           G  Y          VF  M + ++++WN++IS    +     A   F +M   G  P   
Sbjct: 160 GTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPV 219

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           +   V  A  ++ + D    ++ L VK+G  ++ +  V+S+ I ++++   ++ +  +F+
Sbjct: 220 SFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFD 279

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
                +  V N MI  Y +      A++LF Q+M  E     + T    L++I  +  ++
Sbjct: 280 CCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLD 339

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H+  +KS      V+ ++++ MY++ GSI +S ++F  + +RD+V+WNT++    
Sbjct: 340 LGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFV 399

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVL-LACN 458
           QNG   E L +  E+ ++G   D +TL A+L LA N
Sbjct: 400 QNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASN 435



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 166/354 (46%), Gaps = 26/354 (7%)

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISG--CFNSGYGELALDQFYSMRYSGYSP--DEY 247
           + G  + A  +F ++     + WN++I G  C N     L    FY+   +  SP  D Y
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALL---FYARMRASPSPKFDSY 105

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC------------- 294
           T S  + AC + R+L  GK +    ++  F S+ IV ++ ++++S C             
Sbjct: 106 TFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDF 165

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
           N  +   R+F+ + + +    N MIS Y +      A ++F+ M+R  IRPT  +   V 
Sbjct: 166 NNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVF 225

Query: 355 SSI-PIPPVEHGSQFHSMAIKSGFD--SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
            ++  +   ++ +  + + +K G D   +  V SS + MYA+ G +D + EIF    +R+
Sbjct: 226 PAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERN 285

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
              WNT++ G  QN    E +D+F +++E E    D +T  + L A +   ++D G  + 
Sbjct: 286 TEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLH 345

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           + + +   ++      A I+ +  + G +G +  + S M  +     W +++ A
Sbjct: 346 AYILKSSTILQVVILNAIIV-MYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    +    K IHG   +   N + ++G   LD+YS                 
Sbjct: 529 ASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYS----------------- 571

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         KS  +  A  VF E  E + V++ +MI  Y   G  + AL +F  M
Sbjct: 572 --------------KSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAM 617

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P   TF  +LS  S A     G +I  SM R      +      + DM G++G 
Sbjct: 618 LGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGR 677

Query: 196 LY--YAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           +   Y F   L  E      W SL+  C   G  EL 
Sbjct: 678 VXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELG 714


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/548 (29%), Positives = 293/548 (53%), Gaps = 5/548 (0%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ LR      + +    +F +I +P++  WN+MI G  S    D A+E +  M+ +G  
Sbjct: 50  NMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL 109

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ FTF  +L   +       G +IH  +++ G    +V +  SL+ +Y K G L  A  
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFD-CDVFVKTSLVCLYAKCGYLEDAHK 168

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++ + +++SW ++ISG    G    A+D F  +     +PD +TI  V++ACT+L +
Sbjct: 169 VFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGD 228

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ G+ +    +++G + N  V ++ +D+++KC  +E +  +F+ +   D      MI  
Sbjct: 229 LNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQG 288

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y   G  + A++LF  M RE+++P  +T+  VLS+   +  +E G     +  ++ F  N
Sbjct: 289 YALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYN 348

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            V+ ++L+++YAK GS+  + E+F  + ++D V WN I+ GL  NG    +  +F ++ +
Sbjct: 349 PVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEK 408

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G+ PD  T   +L  C + G VD+G   F++M   + + P  EHY C++DLL +AG L 
Sbjct: 409 LGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLD 468

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A  +   MP +    +W ++L A  I+ D +L E   +++++L+  +   Y LL+  Y+
Sbjct: 469 EAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYS 528

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
              +W+   +V+  M +  I K  GCSWI +   ++ F  G+  H   +KIY  L  LT 
Sbjct: 529 ANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTK 588

Query: 621 EMEDEGCV 628
           +M+  G V
Sbjct: 589 KMKVAGYV 596



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 42/334 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C++L+D  L  K       IH  + K GF+   ++    + LY++ G  +D  ++FD
Sbjct: 119 LKACARLLDLQLGVK-------IHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFD 171

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           +IP KN +S                               W ++ISGY   G    A++M
Sbjct: 172 DIPDKNVVS-------------------------------WTAIISGYIGVGKFREAIDM 200

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F ++    + P  FT   +LS  +       G+ IH  ++  G+ + NV +G SL+DMY 
Sbjct: 201 FRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGM-VRNVFVGTSLVDMYA 259

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  VF  M E DI+SW ++I G   +G  + A+D F  M+     PD YT+  
Sbjct: 260 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVG 319

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++AC +L  L+ G+ V  L  +  FL N ++ +A IDL++KC  +  +  +F+ +   D
Sbjct: 320 VLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKD 379

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
             V N +IS     G+ +++  LF  + +  I+P
Sbjct: 380 RVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKP 413



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 38/224 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    + +  + + G + +  F  +  LG   +DLY++ G+     ++F  + +K+
Sbjct: 320 VLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKD 379

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + W                               N++ISG A  GY   +  +F +++ 
Sbjct: 380 RVVW-------------------------------NAIISGLAMNGYVKISFGLFGQVEK 408

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P G TF  LL   + A     G++   SM R      ++     ++D+ G+ G+L 
Sbjct: 409 LGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLD 468

Query: 198 YAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM 237
            A  +  NM  E + I W +L+  C    ++   ELAL Q   +
Sbjct: 469 EAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIEL 512


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 186/631 (29%), Positives = 313/631 (49%), Gaps = 42/631 (6%)

Query: 3   SYLKKAH--VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           S++ + H  +N  +LS    ++  C S  +  + + IH  + K G+N++    N  + +Y
Sbjct: 221 SWMFRVHKEINSTTLS---TMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMY 277

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           S  G  +D                               A  VF  + E D++SWNSM++
Sbjct: 278 SDAGRCED-------------------------------AELVFQGMVEKDMISWNSMMA 306

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSL 177
            YA  G    AL++ + M       +  TF+  L+  S    A  GK +H  +I  GL  
Sbjct: 307 CYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLH- 365

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            NV++GN+L+ +Y K G++  A  VF  M + D ++WN+LI G  +S   + AL  F  M
Sbjct: 366 ENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLM 425

Query: 238 RYSGYSPDEYTISIVINACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           R  G   +  TIS V+ AC    +L + G  + A  +  GF S+  V ++ I +++KC  
Sbjct: 426 REEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGD 485

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLS 355
           L  S  +F++L   + +  N M++    +G  E AL+    M R  +   EF+ S C+ +
Sbjct: 486 LNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAA 545

Query: 356 SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
           +  +  +E G Q H +A+K G DSN  VAS+ M+MY K G ID    I  +   R  +SW
Sbjct: 546 AAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSW 605

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
           N +    +++G   +  + F E++  G+ PD +T  ++L AC++GG V++G+  + +M +
Sbjct: 606 NILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMIK 665

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
           E+G+     H  CIIDLL ++G+  +A      MP  P   +W S+L A   +G+++L  
Sbjct: 666 EFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGR 725

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
              E ++ L       Y L +   A  G+WE + ++++ M  N I K   CSW+ +KN++
Sbjct: 726 KAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNKL 785

Query: 596 YTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             F  G+  H    +IY  L  L   +++ G
Sbjct: 786 SLFGMGDHSHPQASEIYAKLEELKKMIKEAG 816



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 207/426 (48%), Gaps = 38/426 (8%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG + K+G  +  ++G   + LY  +G + D +++F E+  KN                
Sbjct: 52  VHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKN---------------- 95

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                          VVSW +++  Y   G     + ++ +M+ +G+  +  T S ++ST
Sbjct: 96  ---------------VVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVIST 140

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
             S  +   G Q+ G +I+ GL  +NV + NSLI M+G  G +  A  VF  M+E D IS
Sbjct: 141 CVSLENELLGYQVLGHVIKYGLE-TNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTIS 199

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I+    +G  + +L  F  M       +  T+S ++  C  + NL  G+ + +L +
Sbjct: 200 WNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVL 259

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G+ SN    +  I ++S   R ED+  +F+ +   D    N M++ Y + G    AL+
Sbjct: 260 KFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALK 319

Query: 334 LFQLM--LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           L   M  +R       FT +    S P    E G   H++ I  G   N +V ++L+ +Y
Sbjct: 320 LLATMFYMRRGANYVTFTSALAACSDPEFATE-GKILHALVIHVGLHENVIVGNALVTLY 378

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK+G +  + ++F  + KRD V+WN ++ G   +    E L  F+ + EEG+P + IT++
Sbjct: 379 AKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITIS 438

Query: 452 AVLLAC 457
            VL AC
Sbjct: 439 NVLGAC 444



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 205/413 (49%), Gaps = 8/413 (1%)

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA----CHGKQIHGSMIRSG 174
           +SG+   G    ++  F++M+  GV+PSG   + L++    +      G Q+HG +++ G
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
           L LS+V +G SL+ +YG  G+   A  VF  M   +++SW +L+    + G   + ++ +
Sbjct: 61  L-LSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIY 119

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             MR  G S ++ T+S VI+ C  L N   G QV    +K G  +N  V ++ I +F   
Sbjct: 120 RRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYF 179

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             +E++  +F  +D  D    N MI+ Y R G  + +L  F  M R        TLS +L
Sbjct: 180 GSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTML 239

Query: 355 SSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           +    +  ++ G   HS+ +K G++SN   +++L+ MY+  G  + +  +F  + ++D++
Sbjct: 240 AGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMI 299

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SWN++M    Q+G   + L +   +       + +T  + L AC+   F  +G  +  A+
Sbjct: 300 SWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGK-ILHAL 358

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
               G+         ++ L  ++G + +A  +  TMP + G + W +++   A
Sbjct: 359 VIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVT-WNALIGGHA 410



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 200/438 (45%), Gaps = 37/438 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C+S ++      + GH+ K G   +  + N  + ++  FG+             
Sbjct: 135 SSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGS------------- 181

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             ++ A  VF  + E D +SWNSMI+ Y   G    +L  FS M
Sbjct: 182 ------------------VEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWM 223

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                  +  T S +L+   +V +   G+ IH  +++ G + SNV   N+LI MY   G 
Sbjct: 224 FRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWN-SNVCASNTLITMYSDAGR 282

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF  M E D+ISWNS+++     G    AL    +M Y     +  T +  + A
Sbjct: 283 CEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAA 342

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+      +GK + AL + VG   N IV +A + L++K   + ++ ++F+ + + D    
Sbjct: 343 CSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTW 402

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAI 373
           N +I  +      + AL+ F+LM  E +     T+S VL +   P   +EHG   H+  I
Sbjct: 403 NALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFII 462

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
            +GF S+  V +SL+ MYAK G ++SS  IF +L  ++  +WN +M     +G   E L 
Sbjct: 463 LTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALK 522

Query: 434 VFEELLEEGLPPDRITLA 451
              E+   G+  D  + +
Sbjct: 523 FLLEMRRAGVNVDEFSFS 540


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/548 (29%), Positives = 295/548 (53%), Gaps = 17/548 (3%)

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           + L LF+++PQ+N +SWN  + G +K+  L  A +VFD +P+ +VVSW SM+ GY   G 
Sbjct: 73  EALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGD 132

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
              A  +F  M  + V     +++++L  +     G+      +   +   +VV   ++I
Sbjct: 133 VAEAERLFWHMPHKNV----VSWTVMLGGLLQ--EGRVDDARKLFDMMPEKDVVAVTNMI 186

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
             Y + G L  A  +F  M + ++++W +++SG   +G  ++A   F  M       +E 
Sbjct: 187 GGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP----ERNEV 242

Query: 248 TISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           + + ++   T    + +   +F A+ VK   + N +++      F     ++ + R+F+ 
Sbjct: 243 SWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMG-----FGLNGEVDKARRVFKG 297

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHG 365
           +   D    + MI  Y R G+   AL LF+ M RE +     +L  VLS  + +  ++HG
Sbjct: 298 MKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHG 357

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  ++S FD +  VAS L+ MY K G++  + ++F +   +D+V WN+++ G +Q+
Sbjct: 358 KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH 417

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   E L+VF ++   G+PPD +T   VL AC+Y G V +G+ +F  MK +Y V PG EH
Sbjct: 418 GLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEH 477

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YAC++DLL +A Q+ +A+ +   MP +P   +W ++L A   +  + L E   E++  L+
Sbjct: 478 YACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE 537

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             +  PY LL+  YA +GRW  +  +++ ++   + K+ GCSWI ++ +++ F  G+ + 
Sbjct: 538 PKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKG 597

Query: 606 HGGQKIYL 613
           H  Q I +
Sbjct: 598 HPEQPIIM 605



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 176/388 (45%), Gaps = 28/388 (7%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y R G   +  +LF  +P KN +SW + L GLL+   +D A K+FD +PE DVV+  +MI
Sbjct: 127 YVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMI 186

Query: 120 SGYASCGYSDYALEMFSKM-------------------------QLQGVRPSGFTFSILL 154
            GY   G  D A  +F +M                         +L  V P     S   
Sbjct: 187 GGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTA 246

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
             +     G+    S +   + +  VV+ N +I  +G  G +  A  VF  M+E D  +W
Sbjct: 247 MLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTW 306

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           +++I      GY   AL  F  M+  G + +  ++  V++ C  L +LD GKQV A  V+
Sbjct: 307 SAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR 366

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
             F  +  V S  I ++ KC  L  + ++F +    D  + N MI+ Y ++G GE AL +
Sbjct: 367 SEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNV 426

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYA 392
           F  M    + P + T   VLS+      V+ G + F +M  K   +      + L+++  
Sbjct: 427 FHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLG 486

Query: 393 KTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +   ++ + ++  K+  + D + W  ++
Sbjct: 487 RADQVNEAMKLVEKMPMEPDAIVWGALL 514



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 54/235 (22%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+S  S D  K +H  L +  F+   Y+ +  + +Y + G      Q+F+  P K+ + W
Sbjct: 348 CVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMW 407

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                          NSMI+GY+  G  + AL +F  M   GV 
Sbjct: 408 -------------------------------NSMITGYSQHGLGEEALNVFHDMCSSGVP 436

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKL 193
           P   TF  +LS  S        +   ++ GL L   +               L+D+ G+ 
Sbjct: 437 PDDVTFIGVLSACS--------YSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRA 488

Query: 194 GVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSMRYSGYSP 244
             +  A  +   M  E D I W +L+  C         E+A+++   +      P
Sbjct: 489 DQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 543


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 186/638 (29%), Positives = 323/638 (50%), Gaps = 49/638 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF----- 73
           S LI   L +   D A    G LF         + N  L+ Y++ G SD V++ F     
Sbjct: 173 SSLIKAYLEYGKIDVA----GKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRM 228

Query: 74  DEI--------------PQKNCISWNICLRGLL--------------------KSDNLDT 99
           D+I                K  I   + L GL+                    K    D 
Sbjct: 229 DQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDD 288

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A+K+F  +   D V+WN MISGY   G  + +L  F +M   GV P   TFS LL +VS 
Sbjct: 289 AIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSK 348

Query: 159 --SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
             +  + +QIH  ++R  +SL ++ L ++LID Y K   +  A  +F     +D++ + +
Sbjct: 349 FENLEYCRQIHCYIMRHSISL-DIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTA 407

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +ISG  ++G    AL+ F  +     SP+E T+  ++     L  L  G+++    +K G
Sbjct: 408 MISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKG 467

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F +   +  A ID+++KC R+  +  +F +L + D    N MI+   +      A+++F+
Sbjct: 468 FDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFR 527

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M    I     ++S  LS+   +P    G   H   IK     +    S+L++MYAK G
Sbjct: 528 QMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCG 587

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDRITLAAVL 454
           ++ ++  +F  + ++++VSWN+I+     +G+  ++L +F E++E+ G  PD+IT   ++
Sbjct: 588 NLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEII 647

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
             C + G VD+G+  F +M ++YG+ P +EHYAC++DL  +AG+L +A +   +MPF P 
Sbjct: 648 SLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPD 707

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             +W ++L AS ++ +V+L +  + R+MDL   +   Y L++ A+A  G WE++ +V+ +
Sbjct: 708 AGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSL 767

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           M++  + K+ G SWI I    + F +G++ H     IY
Sbjct: 768 MKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIY 805



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 186/400 (46%), Gaps = 16/400 (4%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG-SMIRS 173
           WNS+IS +   G  + AL  + KM   GV P   TF  L+    +  + K I   S   S
Sbjct: 102 WNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVS 161

Query: 174 GLSLS-NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
            L +  N  + +SLI  Y + G +  A  +F  + + D + WN +++G    G  +  + 
Sbjct: 162 SLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIK 221

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            F  MR    SP+  T   V++ C     +D G Q+  L V  G      + ++ + ++S
Sbjct: 222 GFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYS 281

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
           KC R +D+++LF  + R D    N MIS Y + G  E +L  F  M+   + P   T S 
Sbjct: 282 KCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSS 341

Query: 353 VLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           +L S+     +E+  Q H   ++     +  + S+L++ Y K   +  + +IF + +  D
Sbjct: 342 LLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVD 401

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           +V +  ++ G   NG   + L++F  L++  + P+ ITL ++L        V  G+L   
Sbjct: 402 VVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILP-------VIGGLLALK 454

Query: 472 AMKEEYGVM-----PGEEHYAC-IIDLLCQAGQLGKAIDI 505
             +E +G +         +  C +ID+  + G++  A +I
Sbjct: 455 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEI 494


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/543 (31%), Positives = 280/543 (51%), Gaps = 10/543 (1%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L + + L  AL++  +I +P    ++++I             ++   ++L G  P  F  
Sbjct: 49  LCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFIL 108

Query: 151 SILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LL   +   S    +++   M    L   N+     LI  Y K+G+L  A  +F  M 
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNI-----LISGYAKMGLLQEAKSLFDKMP 163

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP-DEYTISIVINACTKLRNLDKGK 266
           E D  SW ++ISG         AL+ F  M+ S  S  +++T+S  + A   +  L  GK
Sbjct: 164 ERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGK 223

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           ++    ++ G  S+ +V SA  D++ KC  +E++  +F+++   D      MI  Y + G
Sbjct: 224 EIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDG 283

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVAS 385
             +   +LF  +LR  IRP EFT S VL++      E  G + H    + GFD  +  AS
Sbjct: 284 RRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAAS 343

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ MY+K G++ S+  +F +  + DL SW +++ G  QNG+  E +  FE L++ G  P
Sbjct: 344 ALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQP 403

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D IT   VL AC + G VDKG+  F ++KE+YG+    +HYACIIDLL ++GQ  +A +I
Sbjct: 404 DHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENI 463

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
            S M  +P   +W S+L    I+G++KL +  AE + +++  +P  Y  L   YA  G W
Sbjct: 464 ISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMW 523

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
             + +++K M   G+ K  G SWI IK  ++ F  G+  H   ++I   L  L+  M++E
Sbjct: 524 SEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEE 583

Query: 626 GCV 628
           G V
Sbjct: 584 GFV 586



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 236/458 (51%), Gaps = 18/458 (3%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
            ++K S S  S LI  C+  +     K +H H+   GF    ++ NR L++Y++  +  D
Sbjct: 64  QIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMD 123

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
             +LFDE+P+++  SWNI + G  K   L  A  +FD++PE D  SW +MISGY      
Sbjct: 124 SQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRP 183

Query: 129 DYALEMFSKMQL-QGVRPSGFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN 184
           + ALE+F  M+     + + FT S      + V     GK+IHG ++R+GL  S+ V+ +
Sbjct: 184 NEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLD-SDEVVWS 242

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +L DMYGK G +  A  +F  M + DI++W ++I   F  G  +   D F  +  SG  P
Sbjct: 243 ALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRP 302

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           +E+T S V+NAC    + + GK+V     +VGF   S   SA + ++SKC  +  + R+F
Sbjct: 303 NEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVF 362

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VE 363
           ++  + D      +I+ Y + G  + A+  F+L+++   +P   T   VLS+      V+
Sbjct: 363 KETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVD 422

Query: 364 HG-SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG 421
            G   FHS+  + G    A   + ++++ A++G  D +  I  K+  K D   W +++ G
Sbjct: 423 KGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGG 482

Query: 422 LTQNG------RAAETLDVFEELLEEGLPPDRITLAAV 453
              +G      RAAE L  FE  +E   P   +TLA +
Sbjct: 483 CRIHGNLKLAQRAAEAL--FE--IEPENPATYVTLANI 516



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 34/166 (20%)

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           V  L N       I +  + NRL++++++  Q+D+   +V + +I               
Sbjct: 33  VPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQ-------------- 78

Query: 335 FQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
                           SC+ S +    ++ G + H     SGF     + + L+EMYAK 
Sbjct: 79  ----------------SCIKSRL----LQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKC 118

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            S+  S ++F ++ +RDL SWN ++ G  + G   E   +F+++ E
Sbjct: 119 DSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 184/660 (27%), Positives = 314/660 (47%), Gaps = 79/660 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C         K++HG   K+G     ++GN  + LY + G  D+ ++LFD++P++N
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQN 275

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPE------PDVVSW------------------- 115
            ISWN  +RG  ++     A + F  + E      PDV +                    
Sbjct: 276 LISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVI 335

Query: 116 ----------------NSMISGYASCGYSDYALEMFSKMQLQGV----------RPSGFT 149
                           N++I  Y+ CG    A  +F K++ + V             GF 
Sbjct: 336 HGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFV 395

Query: 150 F-------------------SILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLG 183
           F                    + +  +  AC         + +HG  +R       ++  
Sbjct: 396 FETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELI-N 454

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N+ I  Y K G L +A  VF  M    + SWN++I G   +G    ALD ++ M   G  
Sbjct: 455 NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL 514

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PD+++I  ++ AC +L  L  GK++    ++ G   NS V  + + L+  C++       
Sbjct: 515 PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTY 574

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPV 362
           FE +   +    N M+S Y +      AL LF+ ML + + P E  ++ +L +   +  +
Sbjct: 575 FETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSAL 634

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G + H  A+K+    +  VA SLM+MYAK+G +  S  IF +L+ +++ SWN ++ G 
Sbjct: 635 GLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGF 694

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
             +G+  + +++FE++      PDR T   VL AC + G V +G+   + M+  Y + P 
Sbjct: 695 GVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPE 754

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            EHYAC+ID+L +AG+L +A++  + MP +P   IW S+L +S  Y D+++ E  AE+++
Sbjct: 755 LEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLL 814

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
            L+      Y LL+  YA  G+W+ +  V++ M+   + K  GCSWI ++ ++Y+F AGE
Sbjct: 815 ALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGE 874



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 221/479 (46%), Gaps = 48/479 (10%)

Query: 4   YLKKAHVNKASLSYCSQ------LIDRCLSFKSFDFAKTIHGHL-FKLGFNAHTYLGNRC 56
           +L++A  N A      +      L+ +C  +K+ +  + +   L     F+    L  R 
Sbjct: 90  FLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRL 149

Query: 57  LDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN 116
           + +YS  G   +   +FD +  KN   WN  + G ++++  D A+  F            
Sbjct: 150 ITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTF------------ 197

Query: 117 SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRS 173
                          LE+ S  + Q   P  FTF  L+   +  C    GK +HG  ++ 
Sbjct: 198 ---------------LELISVTEFQ---PDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM 239

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           GL + ++ +GN++I +YGK G L  A  +F  M E ++ISWNSLI G   +G+   A   
Sbjct: 240 GL-IMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRA 298

Query: 234 FYSMRYSGYS--PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           F S+  SG    PD  T+  ++  C+   N+D G  +  ++VK+G +   +V +A ID++
Sbjct: 299 FRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMY 358

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
           SKC  L ++  LF +++       N MI  Y R GF     +L + M  E+    E    
Sbjct: 359 SKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEE-ELMEVNEV 417

Query: 352 CVLSSIPIPPVEHG----SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
            +L+ +P    E         H  +++  F    ++ ++ +  YAK GS+  +  +F  +
Sbjct: 418 TILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGM 477

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + + + SWN ++ G  QNG   + LD + E+   G+ PD  ++ ++LLAC   G +  G
Sbjct: 478 NTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 153/301 (50%), Gaps = 11/301 (3%)

Query: 248 TISIVINACTKLRNLDKGKQV-FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            + +++  C + +N++ G+++   L V   F  + ++ +  I ++S C    +S  +F++
Sbjct: 109 AMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDR 168

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPPVEH- 364
           L   +    N ++S Y R    + A+  F +L+   + +P  FT  C++ +       H 
Sbjct: 169 LLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHL 228

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H MA+K G   +  V ++++ +Y K G +D + E+F K+ +++L+SWN+++ G ++
Sbjct: 229 GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSE 288

Query: 425 NGRAAETLDVFEELLE--EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
           NG   E    F  LLE  +GL PD  T+  +L  C+  G VD GM V   M  + G++  
Sbjct: 289 NGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLV-- 345

Query: 483 EEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
            E   C  +ID+  + G L +A  +   +  +   S W S++ A +  G V  T ++  +
Sbjct: 346 HELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVS-WNSMIGAYSREGFVFETFDLLRK 404

Query: 541 M 541
           M
Sbjct: 405 M 405


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 303/554 (54%), Gaps = 16/554 (2%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQGVRPSGFTFSILLS 155
           +D A ++FD   E +   WN+MI GY        A+++F + M+ +       TF   L+
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALT 330

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +S       G+Q+H  +++S   L  V+L N++I MY + G +  +F VF NM E D++
Sbjct: 331 AISQLQWLELGRQLHAYILKSSTILQVVIL-NAIIVMYSRCGSIGTSFKVFSNMLERDVV 389

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +WN+++S    +G  +  L   ++M+  G+  D  T++ +++  + LR+ + GKQ  A  
Sbjct: 390 TWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYL 449

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ---LDRWDYAVINVMISTYGRYGFGE 329
           ++ G     +  S  ID+++K   +  + +LFE+    DR D A  N MI+ Y + G  E
Sbjct: 450 IRHGIQFEGMD-SYLIDMYAKSGLITTAQQLFEKNSDYDR-DEATWNAMIAGYTQNGLSE 507

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
               +F+ M+ +++RP   TL+ +L +  P+  +  G Q H  AI+   + N  V ++L+
Sbjct: 508 EGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALL 567

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K+G+I  +  +F +  +++ V++ T++    Q+G     L +F  +L  G+ PD +
Sbjct: 568 DMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSV 627

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  A+L AC+Y G VD+G+ +F +M+ EY + P  EHY C+ D+L + G++ +A +    
Sbjct: 628 TFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKG 687

Query: 509 MPFQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--YSLLTQAYAMRGRW 565
           +  +     IW S+L A  I+G+ +L + VA ++++++  S L   + LL+  YA  G W
Sbjct: 688 LGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNW 747

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           + + RV+K MR+ G+ K  GCSW+ +   +  F + + +H    +IY +L  L  EM+D 
Sbjct: 748 DNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDA 807

Query: 626 GCVYLECDKLDVEG 639
           G  Y  C  L   G
Sbjct: 808 G--YKPCLNLQTGG 819



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 219/456 (48%), Gaps = 27/456 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C   +S    K +H H+ +  F +   + N  L++YS             E+P 
Sbjct: 108 SSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYS---------TCLTEVPY 158

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                    L      +N D   +VFD + + +VV+WN+MIS Y        A +MF  M
Sbjct: 159 ---------LGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTM 209

Query: 139 QLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLS-LSNVVLGNSLIDMYGKLG 194
              G+RP+  +F  +   V   S   +   ++G +++ G   + +  + +S I MY +LG
Sbjct: 210 MRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELG 269

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVI 253
            + +A  +F    E +   WN++I G   +     A+D F   M    +  D+ T    +
Sbjct: 270 CVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSAL 329

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            A ++L+ L+ G+Q+ A  +K   +   ++L+A I ++S+C  +  S ++F  +   D  
Sbjct: 330 TAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVV 389

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMA 372
             N M+S + + G  +  L L   M ++       TL+ +LS +  +   E G Q H+  
Sbjct: 390 TWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYL 449

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAE 430
           I+ G      + S L++MYAK+G I ++ ++F K     RD  +WN ++ G TQNG + E
Sbjct: 450 IRHGIQFEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEE 508

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
              VF +++E+ + P+ +TLA++L ACN  G +  G
Sbjct: 509 GFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG 544



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 154/321 (47%), Gaps = 10/321 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +  ++ T+ KVF  + E DVV+WN+M+S +   G  D  L +   MQ QG      T + 
Sbjct: 369 RCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTA 428

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LLS  S   S   GKQ H  +IR G+      + + LIDMY K G++  A  +F    + 
Sbjct: 429 LLSLASNLRSQEIGKQAHAYLIRHGIQFEG--MDSYLIDMYAKSGLITTAQQLFEKNSDY 486

Query: 210 DI--ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           D    +WN++I+G   +G  E     F  M      P+  T++ ++ AC  +  +  GKQ
Sbjct: 487 DRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQ 546

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +   +++     N  V +A +D++SK   +  +  +F +    +      MIS+YG++G 
Sbjct: 547 IHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGM 606

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVAS 385
           GE AL LF  ML   I+P   T   +LS+      V+ G + F SM  +     +A    
Sbjct: 607 GERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYC 666

Query: 386 SLMEMYAKTGSIDSSTEIFVK 406
            + +M  + G +  + E FVK
Sbjct: 667 CVADMLGRVGRVVEAYE-FVK 686



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 192/396 (48%), Gaps = 29/396 (7%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS- 146
           L  L +  +   AL +FD IP P  V WN++I G+        AL  +++M+     PS 
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMR---ASPSP 100

Query: 147 ---GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-------L 193
               +TFS  L   + A     GK +H  ++RS    S +V  NSL++MY         L
Sbjct: 101 KFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVY-NSLLNMYSTCLTEVPYL 159

Query: 194 GVLY------YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           G  Y          VF  M + ++++WN++IS    +     A   F +M   G  P   
Sbjct: 160 GTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPV 219

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           +   V  A  ++ + D    ++ L VK+G  F+ +  V+S+ I ++++   ++ +  +F+
Sbjct: 220 SFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFD 279

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
                +  V N MI  Y +      A++LF Q+M  E     + T    L++I  +  +E
Sbjct: 280 CCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLE 339

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H+  +KS      V+ ++++ MY++ GSI +S ++F  + +RD+V+WNT++    
Sbjct: 340 LGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFV 399

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVL-LACN 458
           QNG   E L +   + ++G   D +TL A+L LA N
Sbjct: 400 QNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASN 435



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 166/354 (46%), Gaps = 26/354 (7%)

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISG--CFNSGYGELALDQFYSMRYSGYSP--DEY 247
           + G  + A  +F ++     + WN++I G  C N     L    FY+   +  SP  D Y
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALL---FYARMRASPSPKFDSY 105

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC------------- 294
           T S  + AC + R+L  GK +    ++  F S+ IV ++ ++++S C             
Sbjct: 106 TFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDF 165

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
           N  +   R+F+ + + +    N MIS Y +      A ++F+ M+R  IRPT  +   V 
Sbjct: 166 NNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVF 225

Query: 355 SSI-PIPPVEHGSQFHSMAIKSGFD--SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
            ++  +   ++ +  + + +K G D   +  V SS + MYA+ G +D + EIF    +R+
Sbjct: 226 PAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERN 285

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
              WNT++ G  QN    E +D+F +++E E    D +T  + L A +   +++ G  + 
Sbjct: 286 TEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLH 345

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           + + +   ++      A I+ +  + G +G +  + S M  +     W +++ A
Sbjct: 346 AYILKSSTILQVVILNAIIV-MYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 82/216 (37%), Gaps = 36/216 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    +    K IHG   +   N + ++G   LD+YS                 
Sbjct: 529 ASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYS----------------- 571

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         KS  +  A  VF E  E + V++ +MIS Y   G  + AL +F  M
Sbjct: 572 --------------KSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAM 617

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG- 194
              G++P   TF  +LS  S A     G +I  SM R      +      + DM G++G 
Sbjct: 618 LGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGR 677

Query: 195 -VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
            V  Y F   L  E      W SL+  C   G  EL
Sbjct: 678 VVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFEL 713


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/603 (29%), Positives = 306/603 (50%), Gaps = 45/603 (7%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H HL K GF     L N+ L +Y                               LK 
Sbjct: 70  KQLHAHLIKFGFCHVLSLQNQILGVY-------------------------------LKC 98

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD-------YALEMFSKMQLQGVRPSG 147
              D A K+F+E+   +VVSWN +I G   CG ++            F +M L+ V P  
Sbjct: 99  TEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDS 158

Query: 148 FTFSILLSTVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            TF+ L   V    H    G Q+H   ++ GL L +  +G+ L+D+Y + G++  A  VF
Sbjct: 159 TTFNGLFG-VCVKFHDIDMGFQLHCFAVKLGLDL-DCFVGSVLVDLYAQCGLVENARRVF 216

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
           L ++  D++ WN +IS    +   E A   F  MR+ G + DE+T S +++ C  L   D
Sbjct: 217 LVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYD 276

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GKQV    +++ F S+ +V SA I++++K   + D+ RLF+ +   +    N +I  YG
Sbjct: 277 FGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYG 336

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
               G   ++L + MLRE   P E T+S  +S    +  +    Q H+ A+KS F     
Sbjct: 337 NRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLS 396

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           VA+SL+  Y+K GSI S+ + F    + DLVSW +++     +G A E  +VFE++L  G
Sbjct: 397 VANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCG 456

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + PD+I+   VL AC++ G V KG+  F+ M   Y ++P   HY C++DLL + G + +A
Sbjct: 457 IIPDQISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEA 516

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            +   +MP +   +   + + +  ++ ++ L +  AE++  ++    + Y++++  YA  
Sbjct: 517 FEFLRSMPMEAESNTLGAFVASCNLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASH 576

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
             W  + RV+++M      +V GCSWI I N++++F + +  H    +++  L++L W M
Sbjct: 577 RHWSDVERVRRMMGNKCDARVPGCSWIEITNQVHSFVSNDKIHPKALEMHATLKMLLWPM 636

Query: 623 EDE 625
           +++
Sbjct: 637 KEK 639



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 35/339 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L   C+ F   D    +H    KLG +   ++G+  +DLY++ G  ++  ++F  +  + 
Sbjct: 164 LFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHR- 222

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                         D+V WN MIS YA     + A  MF+ M+ 
Sbjct: 223 ------------------------------DLVVWNVMISCYALNCLPEEAFVMFNLMRW 252

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G     FTFS LLS   S  +   GKQ+HG ++R     S+V++ ++LI+MY K   + 
Sbjct: 253 DGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFD-SDVLVASALINMYAKNENIV 311

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F NM   ++++WN++I G  N   G   +     M   G+SPDE TIS  I+ C 
Sbjct: 312 DAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCG 371

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  + +  Q  A +VK  F     V ++ I  +SKC  +  + + F      D      
Sbjct: 372 YVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVSWTS 431

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           +I+ Y  +G  + A E+F+ ML   I P + +   VLS+
Sbjct: 432 LINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSA 470



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 35/260 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S + +DF K +HGH+ +L F++   + +  +++Y++     D  +LFD +  
Sbjct: 263 SNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVI 322

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N +                               +WN++I GY +    +  +++  +M
Sbjct: 323 RNVV-------------------------------AWNTIIVGYGNRREGNEVMKLLREM 351

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G  P   T S  +S    VS+     Q H   ++S      + + NSLI  Y K G 
Sbjct: 352 LREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQ-EFLSVANSLISAYSKCGS 410

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F    E D++SW SLI+     G  + A + F  M   G  PD+ +   V++A
Sbjct: 411 ITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSA 470

Query: 256 CTKLRNLDKGKQVFALSVKV 275
           C+    + KG   F L   V
Sbjct: 471 CSHCGLVTKGLHYFNLMTSV 490



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 12/218 (5%)

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L +GKQ+ A  +K GF     + +  + ++ KC   +D+ +LFE+L   +    N++I  
Sbjct: 66  LPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIR- 124

Query: 322 YGRYGFGEV---------ALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSM 371
            G  G G+              F+ ML E + P   T + +    +    ++ G Q H  
Sbjct: 125 -GIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCF 183

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+K G D +  V S L+++YA+ G ++++  +F+ +  RDLV WN ++     N    E 
Sbjct: 184 AVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEA 243

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
             +F  +  +G   D  T + +L  C+   + D G  V
Sbjct: 244 FVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQV 281


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 177/580 (30%), Positives = 302/580 (52%), Gaps = 23/580 (3%)

Query: 68  DVLQLFDEIP-QKNCISWNICLRGLLKSDNLDT---------ALKVFDEIPEPDVVSWNS 117
           + LQ     P QK+   +N     +L +D L +         A  +FDE+PE DVV+W +
Sbjct: 21  NYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFERGLTSQARNLFDEMPERDVVAWTT 80

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSM 170
           MISGY  C     A  +F  M   G  P     +  +S+V  AC G       + +HG  
Sbjct: 81  MISGYTHCNEYTQAWSVFVDMVKNGNDPPN---AFTISSVLKACKGMKRVFCGRLVHGLA 137

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
           I+       + + N+L+DMY   GV +  A  VF +++E +++SW +LI+G  + G G  
Sbjct: 138 IKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNR 197

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL  F  M   G + + ++ISI + AC  + + + G+Q+    +K GF S+  V ++ +D
Sbjct: 198 ALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILD 257

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ +C  L ++ + F  +   D    N +I+ Y R    E    +F  M  E   P  FT
Sbjct: 258 MYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSDSIE-PFFIFSQMESEGFSPNCFT 316

Query: 350 L-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
             S V +      ++ G Q H    + G D N  +A++L++MYAK G+I  S + F ++ 
Sbjct: 317 FTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMS 376

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
             +LVSW ++M+G   +G   E +++F+E++  G+ PD++   AVL AC++ G VD+G+ 
Sbjct: 377 CTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLR 436

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
             + M  +Y + P +E Y C++DLL + G++  A  +  +MPF    S+W ++L A   +
Sbjct: 437 YINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALLGACKAH 496

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
              +L +  A++ + L+      Y +L+  YA  G+W    R++K+M++ G  KV G SW
Sbjct: 497 NFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAARMRKLMKRAGCRKVAGRSW 556

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           I ++N++Y+F  G       + +Y VL L    M++ G V
Sbjct: 557 IEVRNQVYSFVVGNKMGSHKEWVYEVLELPVQHMKEAGYV 596



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 160/343 (46%), Gaps = 38/343 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTS-DDVLQLFDEI 76
           S ++  C   K     + +HG   K  F     Y+ N  +D+Y+  G    D   +F +I
Sbjct: 115 SSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDI 174

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            +KN +SW   + G     N + AL++F E                              
Sbjct: 175 KEKNVVSWTTLIAGYTHRGNGNRALQIFRE------------------------------ 204

Query: 137 KMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            M L GV  +  + SI +   +++ S   G+QIH ++I+ G   S++ + NS++DMY + 
Sbjct: 205 -MLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKHGFE-SDLPVTNSILDMYCRC 262

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A   F +M E D+I+WN+LI+G   S   E     F  M   G+SP+ +T + ++
Sbjct: 263 GCLSEANKYFNDMTEKDLITWNTLIAGYERSDSIE-PFFIFSQMESEGFSPNCFTFTSLV 321

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC     L  G+QV     + G   N  + +A ID+++KC  + DS + F ++   +  
Sbjct: 322 AACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLV 381

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
               M+  YG +G+G+ A+ELF  M+R  IRP +     VL +
Sbjct: 382 SWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHA 424



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 37/290 (12%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S  S +F + IH  + K GF +   + N  LD+Y R G   +  + F+++ +K+ 
Sbjct: 221 VRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDL 280

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           I+WN  + G  +SD++           EP  +                     FS+M+ +
Sbjct: 281 ITWNTLIAGYERSDSI-----------EPFFI---------------------FSQMESE 308

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G  P+ FTF+ L++  ++A     G+Q+HG + R GL   N+ L N+LIDMY K G +  
Sbjct: 309 GFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLD-GNLELANALIDMYAKCGNIID 367

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +   F  M   +++SW S++ G    GYG+ A++ F  M  SG  PD+     V++AC+ 
Sbjct: 368 SQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSH 427

Query: 259 LRNLDKG-KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              +D+G + +  +        N  +    +DL  +  R+ED+ +L   +
Sbjct: 428 AGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSM 477



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 51/209 (24%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + +HG +F+ G + +  L N  +D+Y++ G   D  + F E+   N +S          
Sbjct: 333 GQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVS---------- 382

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                W SM+ GY + GY   A+E+F +M   G+RP    F  +
Sbjct: 383 ---------------------WTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAV 421

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGVLYYAFGV 202
           L   S        H  ++  GL   N ++ +            ++D+ G+ G +  A+ +
Sbjct: 422 LHACS--------HAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQL 473

Query: 203 FLNMEEL-DIISWNSLISGCFNSGYGELA 230
             +M  + D   W +L+  C    +  L 
Sbjct: 474 IRSMPFMADESVWGALLGACKAHNFSRLG 502


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 191/639 (29%), Positives = 313/639 (48%), Gaps = 66/639 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + ++  C +         +H H  K  F A   +    LD+Y+            
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYA------------ 285

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                              K DN+  A  +FD     +  S+N+MI+GY+   +   AL 
Sbjct: 286 -------------------KCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALL 326

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSL 186
           +F ++   G+   GF   I LS V  AC        G QI+G  I+S LSL +V + N+ 
Sbjct: 327 LFHRLMSSGL---GFD-EISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL-DVCVANAA 381

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           IDMYGK   L  AF VF  M   D +SWN++I+    +G G   L  F SM  S   PDE
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL--- 303
           +T   ++ ACT   +L  G ++ +  VK G  SNS V  + ID++SKC  +E++ ++   
Sbjct: 442 FTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500

Query: 304 ----------FEQLDRWDYAVI-------NVMISTYGRYGFGEVALELFQLMLREDIRPT 346
                      E+L++     +       N +IS Y      E A  LF  M+   I P 
Sbjct: 501 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 560

Query: 347 EFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           +FT + VL +   +     G Q H+  IK    S+  + S+L++MY+K G +  S  +F 
Sbjct: 561 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE 620

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
           K  +RD V+WN ++ G   +G+  E + +FE ++ E + P+ +T  ++L AC + G +DK
Sbjct: 621 KSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDK 680

Query: 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525
           G+  F  MK +YG+ P   HY+ ++D+L ++G++ +A+++   MPF+    IW ++L   
Sbjct: 681 GLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVC 740

Query: 526 AIY-GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
            I+  +V++ E     ++ L       Y+LL+  YA  G WE +  +++ MR   + K  
Sbjct: 741 TIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEP 800

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           GCSW+ +K+ ++ F  G+  H   ++IY  L L+  EM+
Sbjct: 801 GCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 839



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 277/553 (50%), Gaps = 27/553 (4%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K  H H+   GF   T++ N  L +Y+          +FD++P ++ +SW
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  KS+++  A   F+ +P  DVVSWNSM+SGY   G S  ++E+F  M  +G+ 
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 145 PSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
             G TF+I+L   S       G QIHG ++R G   ++VV  ++L+DMY K      +  
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCD-TDVVAASALLDMYAKGKRFVESLR 194

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  + E + +SW+++I+GC  +    LAL  F  M+       +   + V+ +C  L  
Sbjct: 195 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSE 254

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G Q+ A ++K  F ++ IV +AT+D+++KC+ ++D+  LF+  +  +    N MI+ 
Sbjct: 255 LRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITG 314

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y +   G  AL LF  ++   +   E +LS V  +   +  +  G Q + +AIKS    +
Sbjct: 315 YSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLD 374

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             VA++ ++MY K  ++  +  +F ++ +RD VSWN I+    QNG+  ETL +F  +L 
Sbjct: 375 VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR 434

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + PD  T  ++L AC  GG +  GM + S++ +  G+         +ID+  + G + 
Sbjct: 435 SRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIE 492

Query: 501 KA----------IDITSTMP---------FQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +A           +++ TM           Q  C  W SI+    +    +  + +  RM
Sbjct: 493 EAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552

Query: 542 MDLQL-PSPLPYS 553
           M++ + P    Y+
Sbjct: 553 MEMGITPDKFTYA 565



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 24/381 (6%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           +L+VF  IPE + VSW+++I+G         AL+ F +MQ      S   ++ +L + ++
Sbjct: 192 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 251

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G Q+H   ++S  +   +V   +L DMY K   +  A  +F N E L+  S+N+
Sbjct: 252 LSELRLGGQLHAHALKSDFAADGIVRTATL-DMYAKCDNMQDAQILFDNSENLNRQSYNA 310

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G     +G  AL  F+ +  SG   DE ++S V  AC  ++ L +G Q++ L++K  
Sbjct: 311 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSS 370

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              +  V +A ID++ KC  L ++ R+F+++ R D    N +I+ + + G G   L LF 
Sbjct: 371 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 430

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            MLR  I P EFT   +L +     + +G + HS  +KSG  SN+ V  SL++MY+K G 
Sbjct: 431 SMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGM 490

Query: 397 IDSSTEIFVKLDKRD--------------------LVSWNTIMMGLTQNGRAAETLDVFE 436
           I+ + +I  +  +R                      VSWN+I+ G     ++ +   +F 
Sbjct: 491 IEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 550

Query: 437 ELLEEGLPPDRITLAAVLLAC 457
            ++E G+ PD+ T A VL  C
Sbjct: 551 RMMEMGITPDKFTYATVLDTC 571


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 294/536 (54%), Gaps = 13/536 (2%)

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N I+ N  +    K      A KVFD +PE +VVSW +++SG+   G  + +L +F++M 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            QG+ P+ FTFS  L     +++   G QIHG  ++ G  +  V +GNSL+DMY K G +
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM-VEVGNSLVDMYSKCGRI 521

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISIVIN 254
             A  VF  M    +ISWN++I+G  ++GYG  AL  F  M+ +     PDE+T++ ++ 
Sbjct: 522 NEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLK 581

Query: 255 ACTKLRNLDKGKQVFALSVKVGFL--SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           AC+    +  GKQ+    V+ GF   S++ +  + +DL+ KC  L  + + F+Q+     
Sbjct: 582 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTM 641

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              + +I  Y + G    A+ LF+ +     +   F LS ++        ++ G Q  ++
Sbjct: 642 ISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQAL 701

Query: 372 AIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
            +K  SG +++  V++SL++MY K G +D + + F ++  +D++SW  ++ G  ++G   
Sbjct: 702 VVKLPSGLETS--VSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGK 759

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           + + +F ++L   + PD +   AVL AC++ G + +G  +FS + E  G+ P  EHYAC+
Sbjct: 760 KAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACV 819

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG+L +A  +  TMP +P   IW+++L    ++GD++L + V + ++ +   +P
Sbjct: 820 VDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNP 879

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             Y +++  Y   G W      +++    G+ K  G SW+ I+  ++ F +GE  H
Sbjct: 880 ANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSH 935



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 158/326 (48%), Gaps = 37/326 (11%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IHG   K+GF     +GN  +D+YS+ G  ++  ++F  +  ++ ISW            
Sbjct: 492 IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISW------------ 539

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV--RPSGFTFSILL 154
                              N+MI+GY   GY   AL  F  MQ   +  RP  FT + LL
Sbjct: 540 -------------------NAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLL 580

Query: 155 STVSSAC---HGKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
              SS      GKQIHG ++RSG    S+  +  SL+D+Y K G L+ A   F  ++E  
Sbjct: 581 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKT 640

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +ISW+SLI G    G    A+  F  ++      D + +S +I        L +GKQ+ A
Sbjct: 641 MISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQA 700

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L VK+     + V ++ +D++ KC  ++++ + F ++   D     VMI+ YG++G G+ 
Sbjct: 701 LVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKK 760

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSS 356
           A+ +F  MLR +I P E     VLS+
Sbjct: 761 AVSIFNKMLRHNIEPDEVCYLAVLSA 786



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%)

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SG   N + ++ L++MY K      + ++F  + +R++VSW  +M G   NG    +L +
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSL 457

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           F E+  +G+ P+  T +  L AC     ++KG+ +
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 492



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 10/124 (8%)

Query: 32  DFA-----KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           DFA     K +   + KL     T + N  +D+Y + G  D+  + F E+  K+ ISW +
Sbjct: 688 DFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTV 747

Query: 87  CLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSK-MQLQ 141
            + G  K      A+ +F+++     EPD V + +++S  +  G      E+FSK ++ Q
Sbjct: 748 MITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQ 807

Query: 142 GVRP 145
           G++P
Sbjct: 808 GIKP 811


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 181/612 (29%), Positives = 307/612 (50%), Gaps = 39/612 (6%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            ++  C    SF   K +H    K   +   ++ N  LD+YS++G   D   LF  IP K+
Sbjct: 432  ILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKD 491

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             ISWN    GL  + NL+                              + A+ M  +M+L
Sbjct: 492  SISWNALTVGL--AQNLE-----------------------------EEEAVCMLKRMRL 520

Query: 141  QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             G+ P   +FS  +   S + +   GKQIH   I+ G+  SN  +G+SLID+Y K G + 
Sbjct: 521  HGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGI-CSNHAVGSSLIDLYSKHGDVE 579

Query: 198  YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
             +  +F  ++   I+  N+LI+G   +   + A+  F  +   G  P   T S +++ C+
Sbjct: 580  SSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639

Query: 258  KLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
               N   GKQV   ++K G L +  +L  ++  ++ K   LED+ +L  ++ D  +    
Sbjct: 640  GSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEW 699

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
              +IS Y + G+G+ +L  F  M   ++R  E T + VL +   +     G + H +  K
Sbjct: 700  TAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITK 759

Query: 375  SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLD 433
            SGF S     S+L++MY+K G + SS E F +L +K+D++ WN++++G  +NG A E L 
Sbjct: 760  SGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALL 819

Query: 434  VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            +F+++ E  + PD +T   VL+AC + G + +G   F +M++ YG+ P  +HYAC IDLL
Sbjct: 820  LFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLL 879

Query: 494  CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
             + G L +A +    +PF+P   +W + L A  ++ D +  +  A ++++L+      Y 
Sbjct: 880  GRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYV 939

Query: 554  LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
            LL+  +A  G W      ++ MR+ G+ K  GCSWI + N+   F   +  H    +IY 
Sbjct: 940  LLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYE 999

Query: 614  VLRLLTWEMEDE 625
            +L  LT  M+ +
Sbjct: 1000 MLGDLTGMMKKD 1011



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 234/478 (48%), Gaps = 42/478 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C       + + +H  + K GF++  +     +D+Y++ G   +  ++FD I   +
Sbjct: 164 VLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPD 223

Query: 81  CISWN-----------------------------------ICLRGLLKSDNLDTALKVFD 105
            I W+                                     +  L  S  LD A  +  
Sbjct: 224 TICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLK 283

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH 162
           ++P P  V+WN++ISG+A  G     L ++  M+  G+ P+  TF+ +LS  ++      
Sbjct: 284 KMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVE 343

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H + +  GL  +NV +G+SLI++Y K G    A  VF    E +I+ WN++++G  
Sbjct: 344 GQQMHAAAVMHGLD-ANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFV 402

Query: 223 NSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +   E A+  F Y MRY+    DE+T   ++ ACT L +   GKQV  +++K     + 
Sbjct: 403 QNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISL 461

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +AT+D++SK   + D+  LF  +   D    N +     +    E A+ + + M   
Sbjct: 462 FVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLH 521

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I P + + S  +++   I   E G Q H +AIK G  SN  V SSL+++Y+K G ++SS
Sbjct: 522 GITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS 581

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +IF ++D   +V  N ++ G  QN    E + +F+++L++GL P  +T +++L  C+
Sbjct: 582 RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/540 (25%), Positives = 254/540 (47%), Gaps = 51/540 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++    + K+F   + +H      G +A+ ++G+  ++LY++ G   D   +FD   +
Sbjct: 329 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE 388

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + WN  L G ++           +E+PE                     A+ MF  M
Sbjct: 389 KNIVMWNAMLTGFVQ-----------NELPEE--------------------AIRMFQYM 417

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               ++   FTF  +L     +SS   GKQ+H   I++ + +S + + N+ +DMY K G 
Sbjct: 418 MRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS-LFVANATLDMYSKYGA 476

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F  +   D ISWN+L  G   +   E A+     MR  G +PD+ + S  INA
Sbjct: 477 IGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINA 536

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ +R  + GKQ+  L++K G  SN  V S+ IDL+SK   +E S ++F Q+D      I
Sbjct: 537 CSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPI 596

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIK 374
           N +I+ + +    + A++LFQ +L++ ++P+  T S +LS          G Q H   +K
Sbjct: 597 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLK 656

Query: 375 SG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETL 432
           SG    + ++  SL  +Y K+  ++ + ++  ++ D ++L  W  I+ G  QNG    +L
Sbjct: 657 SGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSL 716

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG------EEHY 486
             F  +    +  D  T A+VL AC+        +  F+  KE +G++        E   
Sbjct: 717 VSFWRMRHCNVRSDEATFASVLKACS-------DVTAFADGKEIHGLITKSGFGSYETAT 769

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           + +ID+  + G +  + +    +  +     W S++   A  G       + ++M +LQ+
Sbjct: 770 SALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQI 829



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 37/303 (12%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           + +HG ++R G  L    LG+SL+++Y K G + YA+       E    + +SL+S    
Sbjct: 76  RALHGRILRGGSPLLGR-LGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHAR 134

Query: 224 SGYGELALDQFYSMR-YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           SG     L  F  +R  +G  PD++ +++V++AC+++  L  G+QV    VK GF S+  
Sbjct: 135 SGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVF 194

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
             +A +D+++KC  + ++ R+F+ +   D    + MI+ Y R G  + AL LF  M +  
Sbjct: 195 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P + TL  ++S++                                  A +G +D +T 
Sbjct: 255 SAPDQVTLVTIISTL----------------------------------ASSGRLDHATA 280

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL-LACNYGG 461
           +  K+     V+WN ++ G  Q+G     L +++++   GL P R T A++L  A N   
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 462 FVD 464
           FV+
Sbjct: 341 FVE 343



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           RP +F L+ VLS+   +  + +G Q H   +KSGF S+    ++L++MYAK G + ++  
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  +   D + W++++    + G   E L +F  + + G  PD++TL  ++      G 
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGR 274

Query: 463 VDKGMLVFSAM 473
           +D    +   M
Sbjct: 275 LDHATALLKKM 285



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 3   SYLKKAHVN-KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S+ +  H N ++  +  + ++  C    +F   K IHG + K GF ++    +  +D+YS
Sbjct: 718 SFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYS 777

Query: 62  RFGTSDDVLQLFDEIPQK-NCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWN 116
           + G      + F E+  K + + WN  + G  K+   D AL +F ++ E    PD V++ 
Sbjct: 778 KCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFL 837

Query: 117 SMISGYASCGYSDYALEMFSKM-QLQGVRP 145
            ++      G        F  M ++ G+ P
Sbjct: 838 GVLIACTHSGLISEGRHFFGSMRKVYGLTP 867


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/604 (28%), Positives = 304/604 (50%), Gaps = 37/604 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +  + +++H +  K    +  ++G+  LD+Y R G                    
Sbjct: 106 CGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIG-------------------- 145

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGV 143
                       +D + +VF E+P  + V+W + I+G    G     L  FS+M + + +
Sbjct: 146 -----------KIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQL 194

Query: 144 RPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
               F F+I L   +      +G++IH  +I  G + + + + NSL  MY + G +    
Sbjct: 195 SSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFA-AILWVANSLATMYTECGEMQDGL 253

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F +M E D++ W SLI+     G  E A++ F  MR S  SP+E T +    AC  L 
Sbjct: 254 RLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLS 313

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            L  G+Q+      +G   +  V ++ + ++S C +L+ +  LF+ +   D    + +I 
Sbjct: 314 RLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIG 373

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDS 379
            Y +  FGE   + F  M +   +PT+F L+ +LS   I  V E G Q H++A+  G + 
Sbjct: 374 GYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQ 433

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N  + S+L+ MY+K GSI  ++++F + D+ D+VS   ++ G  ++G+  E +D+FE+ L
Sbjct: 434 NPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSL 493

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
           +    PD +T  +VL AC++ G +D G   F+ M+E Y + P +EHY C++DLLC+AG+L
Sbjct: 494 KLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRL 553

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
             A  + + MP++    +W ++LRA    GDV+     A+R+++L   S      L   +
Sbjct: 554 NDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIH 613

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           +  G W+    V+K M+  G+ K  G S I IK+++  F +G L H   + +  +L L+ 
Sbjct: 614 SSTGNWKEAANVRKDMKSKGVIKEPGWSSILIKDQVSAFASGSLSHPQSEDVCSILELVV 673

Query: 620 WEME 623
            + E
Sbjct: 674 IDSE 677



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 200/393 (50%), Gaps = 12/393 (3%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L+ L+ S  L  A +VFD++P  D+ SW +++ GY +    + AL +FS M++  +  SG
Sbjct: 35  LQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSG 94

Query: 148 FTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            T+  +LS    AC       +G+ +H    ++ L LS+V +G++L+DMY ++G +  + 
Sbjct: 95  DTY--VLSVALKACGQSSNIAYGESLHAYAEKTFL-LSSVFVGSALLDMYMRIGKIDKSC 151

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKL 259
            VF  M   + ++W + I+G  ++G     L  F  M R+   S D +  +I + AC  L
Sbjct: 152 RVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADL 211

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           R +  G+++    +  GF +   V ++   ++++C  ++D +RLFE +   D  +   +I
Sbjct: 212 RQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLI 271

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           + Y R G  E A+  F LM    + P E T +   ++   +  +  G Q H      G  
Sbjct: 272 TAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLG 331

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  V++S+M+MY+    +DS++ +F  +  RD++SW+TI+ G +Q     E    F  +
Sbjct: 332 DSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWM 391

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            + G  P    LA++L        +++G  V +
Sbjct: 392 RQAGPQPTDFALASLLSVSGIMAVLEQGRQVHA 424



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 6/206 (2%)

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           T +RN  + ++    S++    SN +   + +       +L  + ++F+++ R D     
Sbjct: 4   TVVRNGGRIRRFCTASIEKSMHSNHVDTHSQLQDLIDSGKLRVARQVFDKMPRRDIKSWT 63

Query: 317 VMISTYGRYGFGEVALELFQLMLRED---IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMA 372
            ++  Y      E AL LF  M R D   +    + LS  L +      + +G   H+ A
Sbjct: 64  AIMKGYVAATKPEEALILFSAM-RVDPLGVSGDTYVLSVALKACGQSSNIAYGESLHAYA 122

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            K+   S+  V S+L++MY + G ID S  +F ++  R+ V+W   + GL   G   E L
Sbjct: 123 EKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGL 182

Query: 433 DVFEELLE-EGLPPDRITLAAVLLAC 457
             F ++   + L  D    A  L AC
Sbjct: 183 RYFSQMSRFKQLSSDTFAFAIALKAC 208


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 289/554 (52%), Gaps = 33/554 (5%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GK 164
           P     SW   +           A+  + +M + G RP  F F  +L  VS       G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-------------VLYYAFG-------VFL 204
           QIH + ++ G   S+V + N+L++MYGK G              +Y   G       +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           +  + D++SWN++IS    S     AL  F  M   G   D  TI+ V+ AC+ L  LD 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 265 GKQVFALSVKVG-FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           GK++ A  ++    + NS V SA +D++  C ++E   R+F+ +      + N MIS Y 
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 292

Query: 324 RYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKSGFDSN 380
           R G  E AL LF  M++   + P   T++ V+ +    +  +  G + H+ AI++   S+
Sbjct: 293 RNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASD 352

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V S+L++MYAK G ++ S  +F ++  +++++WN ++M    +G+  E L++F+ ++ 
Sbjct: 353 ITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVA 412

Query: 441 EG-----LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E        P+ +T   V  AC++ G + +G+ +F  MK ++GV P  +HYAC++DLL +
Sbjct: 413 EAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGR 472

Query: 496 AGQLGKAIDITSTMPFQ-PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           AGQL +A ++ +TMP +      W S+L A  I+ +V+L E  A+ ++ L+      Y L
Sbjct: 473 AGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVL 532

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  Y+  G W   + V+K MR+ G+ K  GCSWI  ++ ++ F AG++ H   ++++  
Sbjct: 533 LSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGF 592

Query: 615 LRLLTWEMEDEGCV 628
           L  L+ +M  EG V
Sbjct: 593 LETLSEKMRKEGYV 606



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 184/382 (48%), Gaps = 24/382 (6%)

Query: 35  KTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           + IH    K G+ + +  + N  +++Y + G   D              + N  +    K
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGD-----------KTFTNNALMAMYAK 160

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              +D +  +F+   + D+VSWN+MIS ++       AL  F  M L+GV   G T + +
Sbjct: 161 LGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASV 220

Query: 154 LSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   S       GK+IH  ++R+   + N  +G++L+DMY     +     VF ++    
Sbjct: 221 LPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR 280

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTK-LRNLDKGKQV 268
           I  WN++ISG   +G  E AL  F  M + +G  P+  T++ V+ AC   L  + KGK++
Sbjct: 281 IELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEI 340

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A +++    S+  V SA +D+++KC  L  S R+F ++   +    NV+I   G +G G
Sbjct: 341 HAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKG 400

Query: 329 EVALELFQLMLRE-----DIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNA 381
           E ALELF+ M+ E     + +P E T   V ++     +  E  + F+ M    G +  +
Sbjct: 401 EEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTS 460

Query: 382 VVASSLMEMYAKTGSIDSSTEI 403
              + ++++  + G ++ + E+
Sbjct: 461 DHYACVVDLLGRAGQLEEAYEL 482


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 169/546 (30%), Positives = 302/546 (55%), Gaps = 19/546 (3%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L ++ +L +A KVFD + E  VV W  +IS Y     ++ A+E+F      G  P  +T 
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTM 257

Query: 151 SILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV---LYYAFGVFL 204
           S ++S  +   S   G Q+H   +R G + S+  +   L+DMY K  +   + YA  VF 
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGFA-SDACVSCGLVDMYAKSNIEQAMDYANKVFE 316

Query: 205 NMEELDIISWNSLISGCFNSGYGE-LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            M + D+ISW +LISG   SG  E   +  F  M      P+  T S ++ AC  + + D
Sbjct: 317 RMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHD 376

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+QV A  +K    +   V +A + ++++   +E++ R+F QL  ++ ++I+ +  T G
Sbjct: 377 SGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQL--YERSMISCI--TEG 432

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
           R         L   + R D+  +  T + ++S+   +  +  G Q H+M +K+GF S+  
Sbjct: 433 RDA------PLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRF 486

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V++SL+ MY++ G ++ +   F +L  R+++SW +++ GL ++G A   L +F +++  G
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + P+ +T  AVL AC++ G V +G   F +M+ ++G++P  EHYAC++DLL ++G + +A
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEA 606

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
           ++  + MP +    +W+++L A   + ++++ E  A+ +++L+   P PY LL+  YA  
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADA 666

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G W+ + R++  MR N +NK TG SW+ ++N  + F AG+  H   Q IY  L  L  E+
Sbjct: 667 GLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEI 726

Query: 623 EDEGCV 628
           +  G V
Sbjct: 727 KGMGYV 732



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 174/330 (52%), Gaps = 18/330 (5%)

Query: 99  TALKVFDEIPE-PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           +A  VFD +    D+VSW +M S  A  G    +L +  +M   G+ P+ +T    L  V
Sbjct: 102 SARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYT----LCAV 157

Query: 158 SSACHGKQIHGSMI--------RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           + AC   +++  +         + GL  +++ +G++LIDM  + G L  A  VF  + E 
Sbjct: 158 AHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEK 217

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            ++ W  LIS        E A++ F      G+ PD YT+S +I+ACT+L ++  G Q+ 
Sbjct: 218 TVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLH 277

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCN---RLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           +L++++GF S++ V    +D+++K N    ++ + ++FE++ + D      +IS Y + G
Sbjct: 278 SLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSG 337

Query: 327 FGE-VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
             E   + LF  ML E I+P   T S +L +   I   + G Q H+  IKS   +   V 
Sbjct: 338 VQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVG 397

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           ++L+ MYA++G ++ +  +F +L +R ++S
Sbjct: 398 NALVSMYAESGCMEEARRVFNQLYERSMIS 427



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 134/293 (45%), Gaps = 46/293 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +    D  + +H H+ K    A   +GN  + +Y+  G  ++  ++F+++ +
Sbjct: 363 SSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYE 422

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ IS   C+     ++  D  L                                   +M
Sbjct: 423 RSMIS---CI-----TEGRDAPLD------------------------------HRIGRM 444

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + G+  S  TF+ L+S  +S      G+Q+H   +++G   S+  + NSL+ MY + G 
Sbjct: 445 DM-GISSS--TFASLISAAASVGMLTKGQQLHAMTLKAGFG-SDRFVSNSLVSMYSRCGY 500

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  +++ ++ISW S+ISG    GY E AL  F+ M  +G  P++ T   V++A
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+ +  + +GK+ F ++    G +      +  +DL ++   +++++    ++
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEM 613



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 40/239 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + LI    S       + +H    K GF +  ++ N  + +YSR G  +D  + F
Sbjct: 449 SSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSF 508

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           +E+  +N ISW                                SMISG A  GY++ AL 
Sbjct: 509 NELKDRNVISW-------------------------------TSMISGLAKHGYAERALS 537

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F  M L GV+P+  T+  +LS  S       GK+   SM R    +  +     ++D+ 
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 191 GKLGVLYYAFGVFLNMEEL--DIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSP 244
            + G++  A   F+N   L  D + W +L+  C    N   GE+A      +     +P
Sbjct: 598 ARSGLVKEALE-FINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAP 655



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 12/200 (6%)

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVINVMISTYGRYGFGEVALELFQLM 338
           +++V ++ + L+S+C  +  +  +F+ +    D      M S   R G    +L L   M
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEM 142

Query: 339 LREDIRPTEFTLSCVLSSIPIP-------PVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           L   + P  +TL C ++    P               H M +   + ++  V S+L++M 
Sbjct: 143 LESGLLPNAYTL-CAVAHACFPHELYCLVGGVVLGLVHKMGL---WGTDIAVGSALIDML 198

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           A+ G + S+ ++F  L ++ +V W  ++    Q   A E +++F + LE+G  PDR T++
Sbjct: 199 ARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMS 258

Query: 452 AVLLACNYGGFVDKGMLVFS 471
           +++ AC   G V  G+ + S
Sbjct: 259 SMISACTELGSVRLGLQLHS 278


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 171/591 (28%), Positives = 295/591 (49%), Gaps = 37/591 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    + GF A  ++G+  ++LYSR G+                             
Sbjct: 156 EQVHSLAVRAGFAADAWIGSCLIELYSRCGS----------------------------- 186

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             L  A +VF  +  PDVV + S++S     G    A+++  +M  QG++P+  T + +L
Sbjct: 187 --LRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSML 244

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G+QIHG M++  +   +V    +LID Y + G    A  VF N+E  +++SW
Sbjct: 245 AECPRGI-GEQIHGYMLKV-MGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSW 302

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S++  C   G  + AL  F  M   G  P+E+  SI ++AC    ++  G+Q+   ++K
Sbjct: 303 CSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACG---SVCLGRQIHCSAIK 359

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
              +++  V +A + ++ +   + +   +  +++  D       IS   + GF E A+ L
Sbjct: 360 RDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVAL 419

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
              M  E   P ++  S  LSS   +  +  G Q H +A+K G D      ++L+ MY+K
Sbjct: 420 LLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSK 479

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G I S+   F  +D  D++SWN+++ GL Q+G A   L+ F E+      PD  T  +V
Sbjct: 480 CGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSV 539

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L+ CN+ G V +G   F  M + YG+ P   HYAC+ID+L + G+  +A+ +   MPF+P
Sbjct: 540 LVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEP 599

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
              IW+++L +  ++ ++ + +  A+++M+L       Y L++  YAM   W    RV++
Sbjct: 600 DVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVRR 659

Query: 574 VMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
            M + G+ K  G SWI +KN + TF AG++ H     IY +L  L   M+D
Sbjct: 660 RMDEIGVKKDAGWSWIEVKNEVNTFVAGDMSHPDSTSIYQMLAELLVVMQD 710



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 216/456 (47%), Gaps = 24/456 (5%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L GL+KS  L  AL +FD +P  +VV+W + ISG    G  + A  MF+ M   GV P+ 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 148 F---TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F         +   +   G+Q+H   +R+G + ++  +G+ LI++Y + G L  A  VF 
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFA-ADAWIGSCLIELYSRCGSLRAAEEVFR 195

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  D++ + SL+S    +G    A+D    M   G  P+E+T++ ++  C +      
Sbjct: 196 RMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GI 251

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+Q+    +KV    +    +A ID +S+      +  +FE L+  +      M+    R
Sbjct: 252 GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIR 311

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
            G  + AL +F  M+ E ++P EF  S  LS+     V  G Q H  AIK    ++  V+
Sbjct: 312 DGRLDDALRVFSEMISEGVQPNEFAFSIALSA--CGSVCLGRQIHCSAIKRDLMTDIRVS 369

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+ MY ++G +     +  K++  DLVSW   +    QNG + + + +  ++  EG  
Sbjct: 370 NALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFT 429

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS-AMKE--EYGVMPGEEHYACIIDLLCQAGQLGK 501
           P+    ++ L +C     + +G  +   A+K   ++ V  G      +I++  + G++G 
Sbjct: 430 PNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGN----ALINMYSKCGRIGS 485

Query: 502 ---AIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
              A D+  T         W S++   A +GD  L 
Sbjct: 486 ARLAFDVMDTHDVMS----WNSLIHGLAQHGDANLA 517



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 146/279 (52%), Gaps = 3/279 (1%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +VVL    +D   K G L  A  +F  M   ++++W + ISGC  +G  E A   F  M 
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG +P+++  +  + AC     L  G+QV +L+V+ GF +++ + S  I+L+S+C  L 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +  +F +++  D      ++S   R G    A+++   M R+ ++P E T++ +L+   
Sbjct: 189 AAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAEC- 247

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
             P   G Q H   +K     +   +++L++ Y++ G   ++  +F  L+ +++VSW ++
Sbjct: 248 --PRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSM 305

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           M    ++GR  + L VF E++ EG+ P+    +  L AC
Sbjct: 306 MQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC 344



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 42/222 (18%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C         + +H    KLG +     GN  +++YS+ G        FD +   + +SW
Sbjct: 442 CADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSW 501

Query: 85  NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + GL +  + + AL+ F E+      PD  ++ S++ G    G        F +M  
Sbjct: 502 NSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTD 561

Query: 141 Q-GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           + G+ P+   +         AC                        +IDM G+ G    A
Sbjct: 562 RYGLTPTPSHY---------AC------------------------MIDMLGRNGRFAEA 588

Query: 200 FGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM 237
             +  NM  E D++ W +L++ C    N   G+LA D+   +
Sbjct: 589 LRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMEL 630


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 319/628 (50%), Gaps = 38/628 (6%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           + ++C  ++  C +    + A  + G  +K  F     +    +D++ R G  D   +LF
Sbjct: 138 AFTFCC-VMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            +I +      N  L G  K   +D A++ F+++ E DVVSWN MI+  +  G    AL 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +  +M  +GVR    T++  L+  +   S   GKQ+H  +IRS L   +  + ++LI++Y
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS-LPQIDPYVASALIELY 315

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G    A  VF ++++ + +SW  LI G         +++ F  MR    + D++ ++
Sbjct: 316 AKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALA 375

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +I+ C    +L  G+Q+ +L +K G     +V ++ I L++KC  L+++  +F  +   
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 435

Query: 311 D----------YAVI---------------------NVMISTYGRYGFGEVALELFQLML 339
           D          Y+ I                     N M+  Y ++G  E  L+++  ML
Sbjct: 436 DIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAML 495

Query: 340 -REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            ++D+ P   T   +      I   + G Q     +K+G   N  VA++ + MY+K G I
Sbjct: 496 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRI 555

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             + ++F  L+ +D+VSWN ++ G +Q+G   +    F+++L +G  PD I+  AVL  C
Sbjct: 556 SEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGC 615

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ G V +G L F  M   +G+ PG EH++C++DLL +AG L +A D+   MP +P   +
Sbjct: 616 SHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEV 675

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W ++L A  I+G+ +L E  A+ + +L  P    Y LL + Y+  G+ +   +V+K+MR 
Sbjct: 676 WGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRD 735

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQH 605
            GI K  G SW+ ++N+++ F A ++ H
Sbjct: 736 KGIKKNPGYSWMEVENKVHVFKADDVSH 763



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 226/493 (45%), Gaps = 40/493 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD-EIPQKNCIS 83
           C S  +   A+ +HG L  +G  +  +L N  L  Y   G   D  +L   +I + N I+
Sbjct: 14  CGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVIT 73

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
            NI + G  K  +L  A ++FD +P  DV SWN+++SGY         LE F  M   G 
Sbjct: 74  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGD 133

Query: 144 R-PSGFTFSILLSTVSS-ACH--GKQIHG------------------------------S 169
             P+ FTF  ++ +  +  C     Q+ G                              S
Sbjct: 134 SLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFAS 193

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
            + S +    +   NS++  Y KL  + +A   F +M E D++SWN +I+    SG    
Sbjct: 194 RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL     M   G   D  T +  + AC +L +L  GKQ+ A  ++     +  V SA I+
Sbjct: 254 ALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIE 313

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           L++KC   +++ R+F  L   +     V+I    +Y     ++ELF  M  E +   +F 
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 350 LSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L+ ++S       +  G Q HS+ +KSG +   VV++SL+ +YAK G + ++  +F  + 
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +RD+VSW +++   +Q G   +  + F+ +       + IT  A+L A    G  + G+ 
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLK 489

Query: 469 VFSAMKEEYGVMP 481
           ++SAM  +  V P
Sbjct: 490 MYSAMLSQKDVTP 502


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 302/610 (49%), Gaps = 44/610 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +      A+ +H H  K  F++   +G   +D+Y++ G                    
Sbjct: 262 CAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAG-------------------- 301

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                      NL  A + F  +P  +V + N+M+ G    G    A+++F  M   GV 
Sbjct: 302 -----------NLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGV- 349

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             GF   I LS V SAC        G Q+H   ++SG  + +V + N+++D+YGK   L 
Sbjct: 350 --GFDV-ISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDV-DVCVRNAILDLYGKCKALV 405

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ VF  ME+ D +SWN++I+    +   E  +     M  SG  PD++T   V+ AC 
Sbjct: 406 EAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACA 465

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L++L+ G  V   ++K G   ++ V S  +D++ KC  + ++ +L +++   +    N 
Sbjct: 466 GLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNS 525

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +IS +      E A   F  ML   ++P  FT + VL +   +  +E G Q H   IK  
Sbjct: 526 IISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQE 585

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +  ++S+L++MYAK G++  S  +F K  K D VSWN ++ G   +G+  E L++FE
Sbjct: 586 MLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFE 645

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            +    + P+  T  AVL AC++ G +D G   F  M   Y ++P  EH+AC++D+L ++
Sbjct: 646 RMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRS 705

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
               +A++   +MP +    +W+++L    I  DV++ E  A  ++ L       Y LL+
Sbjct: 706 KGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLS 765

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G+W  + R +++MR+  + K  GCSWI +++ ++ F  G+  H   +++Y +L 
Sbjct: 766 NVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMHGFLVGDKVHPRSKEVYEMLN 825

Query: 617 LLTWEMEDEG 626
            L  EM+  G
Sbjct: 826 SLIGEMKLSG 835



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 156/552 (28%), Positives = 275/552 (49%), Gaps = 15/552 (2%)

Query: 10  VNKASLSYCSQLIDRCLSF--KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           V  A+ S+  QL   C S    +    +  H  +   GF   T++ N  L +Y+R G + 
Sbjct: 15  VATATFSHLYQL---CASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTA 71

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
               +FD +P ++ +SWN  L   + + + DTA  +F  +P+PDVVSWN++ISGY   G 
Sbjct: 72  HAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGM 131

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGN 184
              ++ +  +M  +GV     T ++LL +   +     G QIH   +++GL  ++V  G+
Sbjct: 132 FRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLE-TDVRAGS 190

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +L+DMYGK   L  A   F  M E + +SW + I+GC  +      ++ F  M+  G   
Sbjct: 191 ALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGV 250

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
            +   +    +C  +  L   +Q+ A ++K  F S+ +V +A +D+++K   L D+ R F
Sbjct: 251 SQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAF 310

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
             L   +    N M+    R G G  A++LFQ M R  +     +LS V S+   +    
Sbjct: 311 IGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYF 370

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H +A+KSGFD +  V ++++++Y K  ++  +  +F ++++RD VSWN I+  L 
Sbjct: 371 QGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALE 430

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF-SAMKEEYGVMPG 482
           QN    +T+    E+L  G+ PD  T  +VL AC     ++ G++V   A+K   G+   
Sbjct: 431 QNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAF 490

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
               + ++D+ C+ G + +A  +   +  Q   S W SI+   ++    +  +     M+
Sbjct: 491 VS--STVVDMYCKCGAITEAQKLHDRIGGQELVS-WNSIISGFSLTKQSEEAQRFFSEML 547

Query: 543 DLQL-PSPLPYS 553
           D+ + P    Y+
Sbjct: 548 DMGVKPDHFTYA 559



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 220/416 (52%), Gaps = 16/416 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV---RP---S 146
           K  +LD AL+ F  + E + VSW + I+G          +E+F +MQ  G+   +P   S
Sbjct: 198 KCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYAS 257

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            F     +  +S+A   +Q+H   I++  S S+ V+G +++D+Y K G L  A   F+ +
Sbjct: 258 AFRSCAAMPCLSTA---RQLHAHAIKNVFS-SDRVVGTAIVDVYAKAGNLVDARRAFIGL 313

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              ++ + N+++ G   +G G  A+  F  M  SG   D  ++S V +AC +++   +G 
Sbjct: 314 PHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGL 373

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           QV  L+VK GF  +  V +A +DL+ KC  L ++  +F+++++ D    N +I+   +  
Sbjct: 374 QVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNE 433

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E  +     MLR  + P +FT   VL +   +  +E+G   H  AIKSG   +A V+S
Sbjct: 434 CYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSS 493

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           ++++MY K G+I  + ++  ++  ++LVSWN+I+ G +   ++ E    F E+L+ G+ P
Sbjct: 494 TVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKP 553

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHY-ACIIDLLCQAGQL 499
           D  T A VL  C     ++ G  +    +K+E   M G+E+  + ++D+  + G +
Sbjct: 554 DHFTYATVLDTCANLATIELGKQIHGQIIKQE---MLGDEYISSTLVDMYAKCGNM 606



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 187/425 (44%), Gaps = 48/425 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K +     +H    K GF+    + N  LDLY +     +   +F E+ Q
Sbjct: 357 SGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 416

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SWN  +  L +           +E  E  +   N M+                   
Sbjct: 417 RDSVSWNAIIAALEQ-----------NECYEDTIAHLNEMLR------------------ 447

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQ-------IHGSMIRSGLSLSNVVLGNSLIDMYG 191
              G+ P  FT+  +L     AC G Q       +HG  I+SGL L +  + ++++DMY 
Sbjct: 448 --SGMEPDDFTYGSVL----KACAGLQSLEYGLVVHGKAIKSGLGL-DAFVSSTVVDMYC 500

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  +   +   +++SWNS+ISG   +   E A   F  M   G  PD +T + 
Sbjct: 501 KCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYAT 560

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V++ C  L  ++ GKQ+    +K   L +  + S  +D+++KC  + DS+ +FE+  + D
Sbjct: 561 VLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLD 620

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FH 369
           +   N MI  Y  +G G  ALE+F+ M R ++ P   T   VL +   +  ++ G Q FH
Sbjct: 621 FVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFH 680

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM--MGLTQNG 426
            M  +          + ++++  ++     + E    +  + D V W T++    + Q+ 
Sbjct: 681 LMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDV 740

Query: 427 RAAET 431
             AET
Sbjct: 741 EVAET 745


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 319/628 (50%), Gaps = 38/628 (6%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           + ++C  ++  C +    + A  + G  +K  F     +    +D++ R G  D   +LF
Sbjct: 138 AFTFCC-VMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            +I +      N  L G  K   +D A++ F+++ E DVVSWN MI+  +  G    AL 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +  +M  +GVR    T++  L+  +   S   GKQ+H  +IRS L   +  + ++LI++Y
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS-LPQIDPYVASALIELY 315

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G    A  VF ++++ + +SW  LI G         +++ F  MR    + D++ ++
Sbjct: 316 AKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALA 375

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +I+ C    +L  G+Q+ +L +K G     +V ++ I L++KC  L+++  +F  +   
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 435

Query: 311 D----------YAVI---------------------NVMISTYGRYGFGEVALELFQLML 339
           D          Y+ I                     N M+  Y ++G  E  L+++  ML
Sbjct: 436 DIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAML 495

Query: 340 -REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            ++D+ P   T   +      I   + G Q     +K+G   N  VA++ + MY+K G I
Sbjct: 496 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRI 555

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             + ++F  L+ +D+VSWN ++ G +Q+G   +    F+++L +G  PD I+  AVL  C
Sbjct: 556 SEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGC 615

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ G V +G L F  M   +G+ PG EH++C++DLL +AG L +A D+   MP +P   +
Sbjct: 616 SHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEV 675

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W ++L A  I+G+ +L E  A+ + +L  P    Y LL + Y+  G+ +   +V+K+MR 
Sbjct: 676 WGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRD 735

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQH 605
            GI K  G SW+ ++N+++ F A ++ H
Sbjct: 736 KGIKKNPGYSWMEVENKVHVFKADDVSH 763



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 226/493 (45%), Gaps = 40/493 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD-EIPQKNCIS 83
           C S  +   A+ +HG L  +G  +  +L N  L  Y   G   D  +L   +I + N I+
Sbjct: 14  CGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVIT 73

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
            NI + G  K  +L  A ++FD +P  DV SWN+++SGY         LE F  M   G 
Sbjct: 74  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGD 133

Query: 144 R-PSGFTFSILLSTVSS-ACH--GKQIHG------------------------------S 169
             P+ FTF  ++ +  +  C     Q+ G                              S
Sbjct: 134 SLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFAS 193

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
            + S +    +   NS++  Y KL  + +A   F +M E D++SWN +I+    SG    
Sbjct: 194 RLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           AL     M   G   D  T +  + AC +L +L  GKQ+ A  ++     +  V SA I+
Sbjct: 254 ALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIE 313

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           L++KC   +++ R+F  L   +     V+I    +Y     ++ELF  M  E +   +F 
Sbjct: 314 LYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 350 LSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L+ ++S       +  G Q HS+ +KSG +   VV++SL+ +YAK G + ++  +F  + 
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +RD+VSW +++   +Q G   +  + F+ +       + IT  A+L A    G  + G+ 
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLK 489

Query: 469 VFSAMKEEYGVMP 481
           ++SAM  +  V P
Sbjct: 490 MYSAMLSQKDVTP 502


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 263/480 (54%), Gaps = 8/480 (1%)

Query: 130 YALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
           YAL++  +  L    P    +S LL   + +     G+ +H  ++ S    +++VL N +
Sbjct: 73  YALDLIQRGSLV---PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNII 129

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           ++MY K G L  A  +F  M   D+++W +LI+G   +     AL  F  M   G  P+ 
Sbjct: 130 VNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNH 189

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           +T+S ++ A      LD G Q+ A  +K G+ S+  V SA +D++++C  ++ +   F+ 
Sbjct: 190 FTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDG 249

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG 365
           +        N +IS + R G GE AL L   M R++ +PT FT S V S+   I  +E G
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQG 309

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
              H+  IKSG    A + ++L++MYAK GSID +  +F +L K D+VSWNT++ G  Q+
Sbjct: 310 KWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQH 369

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   ETLD FE++L  G+ P+ I+   VL AC++ G +D+G+  F  MK +Y V P   H
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPH 428

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y   +DLL + G L +A      MP +P  ++W ++L A  ++ +++L    AER  +L 
Sbjct: 429 YVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELD 488

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                P  LL+  YA  GRW  + +V+K+M+++G+ K   CSW+ I+N ++ F A +  H
Sbjct: 489 PHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETH 548



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 170/342 (49%), Gaps = 36/342 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           S+L+  C      +  + +H HL    F + H  L N  +++Y++ G  DD         
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDD--------- 141

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                                 A ++FDE+P  D+V+W ++I+G++       AL +F +
Sbjct: 142 ----------------------ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQ 179

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G++P+ FT S LL    S      G Q+H   ++ G   S+V +G++L+DMY + G
Sbjct: 180 MLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ-SSVYVGSALVDMYARCG 238

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A   F  M     +SWN+LISG    G GE AL   + M+   + P  +T S V +
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFS 298

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  +  L++GK V A  +K G    + + +  +D+++K   ++D+ R+F++L + D   
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            N M++   ++G G+  L+ F+ MLR  I P E +  CVL++
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 137/292 (46%), Gaps = 35/292 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+    S    D    +H    K G+ +  Y+G+  +D+Y+R G  D     FD +P 
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ +SW                               N++ISG+A  G  ++AL +  KM
Sbjct: 253 KSEVSW-------------------------------NALISGHARKGEGEHALHLLWKM 281

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q +  +P+ FT+S + S  +S      GK +H  MI+SGL L    +GN+L+DMY K G 
Sbjct: 282 QRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLI-AFIGNTLLDMYAKAGS 340

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  + + D++SWN++++GC   G G+  LD+F  M   G  P+E +   V+ A
Sbjct: 341 IDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTA 400

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    LD+G   F L  K     +       +DL  +   L+ + R   ++
Sbjct: 401 CSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM 452



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 50/214 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C S  + +  K +H H+ K G     ++GN  LD+Y++ G+ DD          
Sbjct: 294 SSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDD---------- 343

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VFD + +PDVVSWN+M++G A  G     L+ F +M
Sbjct: 344 ---------------------AKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM 382

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL----------SNVVLGNSLID 188
              G+ P+  +F  +L+  S        H  ++  GL             +V    + +D
Sbjct: 383 LRIGIEPNEISFLCVLTACS--------HSGLLDEGLYYFELMKKYKVEPDVPHYVTFVD 434

Query: 189 MYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           + G++G+L  A      M  E     W +L+  C
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALLGAC 468


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 302/610 (49%), Gaps = 44/610 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +      A+ +H H  K  F+A   +G   +D+Y+                       
Sbjct: 247 CAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYA----------------------- 283

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                   K+D+L  A + F  +P   V + N+M+ G    G    AL++F  M   G+ 
Sbjct: 284 --------KADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGI- 334

Query: 145 PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             GF   + LS V SAC        G Q+H   I+SG  + +V + N+++D+YGK   L 
Sbjct: 335 --GFDV-VSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDV-DVCVRNAILDLYGKCKALV 390

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ VF  ME+ D +SWN++I+    +   E  +     M   G  PD++T   V+ AC 
Sbjct: 391 EAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACA 450

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L++L+ G  V   ++K G   ++ V S  +D++ KC  + ++ +L +++   +    N 
Sbjct: 451 GLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNS 510

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +IS +      E A + F  ML   ++P  FT + VL +   +  +E G Q H   IK  
Sbjct: 511 IISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQE 570

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +  ++S+L++MYAK G++  S  +F K  K D VSWN ++ G   +G+  E L++FE
Sbjct: 571 MLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFE 630

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            + +  + P+  T  AVL AC++ G +D G   F  M   Y + P  EH+AC++D+L ++
Sbjct: 631 RMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRS 690

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
               +A+    +MP +    IW+++L    I  DV++ E  A  ++ L       Y LL+
Sbjct: 691 KGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLS 750

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G+W  + R +++MR+  + K  GCSWI +++ ++ F AG+  H   +++Y +L 
Sbjct: 751 NVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSREVYEMLN 810

Query: 617 LLTWEMEDEG 626
            L  EM+  G
Sbjct: 811 NLIVEMKLSG 820



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 262/525 (49%), Gaps = 10/525 (1%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           +  H  +   GF   T++ N  L +Y+R G +     +FD +P ++ +SWN  L     +
Sbjct: 24  QAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHA 83

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            +   A  +F  +P+PDVVSWN+++SGY   G    ++ +  +M  +GV P   T ++LL
Sbjct: 84  GDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLL 143

Query: 155 ST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                +     G QIH   +++GL + +V  G++L+DMYGK   L  A   F  M E + 
Sbjct: 144 KACGGLEDLALGVQIHAVAVKTGLEM-DVRAGSALVDMYGKCRSLEDALRFFHGMGERNS 202

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW + I+GC  +      L+ F  M+  G    +   + V  +C  +  L   +Q+ A 
Sbjct: 203 VSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAH 262

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           ++K  F ++ +V +A +D+++K + L D+ R F  L        N M+    R G G  A
Sbjct: 263 AIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEA 322

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L+LFQ M R  I     +LS V S+   +     G Q H +AIKSGFD +  V ++++++
Sbjct: 323 LQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDL 382

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K  ++  +  +F ++++RD VSWN I+  L QN    +T+    E+L  G+ PD  T 
Sbjct: 383 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTY 442

Query: 451 AAVLLACNYGGFVDKGMLVF-SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
            +VL AC     ++ G +V   A+K   G+       + ++D+ C+ G + +A  +   +
Sbjct: 443 GSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVDMYCKCGMITEAQKLHDRI 500

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYS 553
             Q   S W SI+   ++    +  +     M+D+ + P    Y+
Sbjct: 501 GGQELVS-WNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYA 544



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 231/485 (47%), Gaps = 41/485 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   +       IH    K G       G+  +D+Y +  + +D L+ F  + ++N
Sbjct: 142 LLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERN 201

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW   + G ++++                                    LE+F +MQ 
Sbjct: 202 SVSWGAAIAGCVQNEQYTR-------------------------------GLELFVQMQR 230

Query: 141 QGVRPSGFTF-SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+  S   + S+  S  +  C    +Q+H   I++  S   VV G +++D+Y K   L 
Sbjct: 231 LGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVV-GTAIVDVYAKADSLV 289

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F ++    + + N+++ G   +G G  AL  F  M  SG   D  ++S V +AC 
Sbjct: 290 DARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACA 349

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +++   +G QV  L++K GF  +  V +A +DL+ KC  L ++  +F+++++ D    N 
Sbjct: 350 EVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNA 409

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +I+   +    E  +     MLR  + P +FT   VL +   +  +E+GS  H  AIKSG
Sbjct: 410 IIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSG 469

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +A V+S++++MY K G I  + ++  ++  ++LVSWN+I+ G + N ++ E    F 
Sbjct: 470 LGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFS 529

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA-MKEEYGVMPGEEHY-ACIIDLLC 494
           E+L+ G+ PD  T A VL  C     ++ G  +    +K+E   M G+E+  + ++D+  
Sbjct: 530 EMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQE---MLGDEYISSTLVDMYA 586

Query: 495 QAGQL 499
           + G +
Sbjct: 587 KCGNM 591



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 156/341 (45%), Gaps = 35/341 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +   C   K +     +H    K GF+    + N  LDLY +     +   +F E+ Q
Sbjct: 342 SGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 401

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SWN  +  L +           +E  E  +   N M+                   
Sbjct: 402 RDSVSWNAIIAALEQ-----------NECYEDTIAYLNEMLR------------------ 432

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G+ P  FT+  +L     + S  +G  +HG  I+SGL L +  + ++++DMY K G+
Sbjct: 433 --YGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGL-DAFVSSTVVDMYCKCGM 489

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +   +   +++SWNS+ISG   +   E A   F  M   G  PD +T + V++ 
Sbjct: 490 ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDT 549

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  ++ GKQ+    +K   L +  + S  +D+++KC  + DS+ +FE+  + D+   
Sbjct: 550 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSW 609

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  Y  +G G  ALE+F+ M + ++ P   T   VL +
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRA 650



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 35/254 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   +S ++   +HG   K G     ++ +  +D+Y + G   +  +L D I  + 
Sbjct: 445 VLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQE 504

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               NS+ISG++    S+ A + FS+M  
Sbjct: 505 LVSW-------------------------------NSIISGFSLNKQSEEAQKFFSEMLD 533

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV+P  FT++ +L T ++      GKQIHG +I+  + L +  + ++L+DMY K G + 
Sbjct: 534 IGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEM-LGDEYISSTLVDMYAKCGNMP 592

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +  +F   ++LD +SWN++I G    G G  AL+ F  M+ +   P+  T   V+ AC+
Sbjct: 593 DSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACS 652

Query: 258 KLRNLDKGKQVFAL 271
            +  LD G + F L
Sbjct: 653 HVGLLDDGCRYFYL 666



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 33/131 (25%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM---- 420
           G   H+  + SGF     V++ L++MYA+ G    +  +F  +  RD VSWNT++     
Sbjct: 23  GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAH 82

Query: 421 ---------------------------GLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
                                      G  Q G   +++ +  E+   G+ PDR TLA +
Sbjct: 83  AGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVL 142

Query: 454 LLACNYGGFVD 464
           L AC  GG  D
Sbjct: 143 LKAC--GGLED 151


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 175/587 (29%), Positives = 294/587 (50%), Gaps = 37/587 (6%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           +  + + IHG + KLG +++  + N  L LYS  G S+D                     
Sbjct: 413 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED--------------------- 451

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                     A  VF  + E D++SWNSM++ Y   G     L++ +++   G   +  T
Sbjct: 452 ----------AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVT 501

Query: 150 FSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           F+  L+  S+       K +H  +I +G     +++GN+L+ MYGKLG++  A  V   M
Sbjct: 502 FASALAACSNPECLIESKIVHALIIVAGFH-DFLIVGNALVTMYGKLGMMMEAKKVLQTM 560

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK-G 265
            + D ++WN+LI G   +     A+  +  +R  G   +  T+  V+ AC+   +L K G
Sbjct: 561 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 620

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
             + A  V  GF S+  V ++ I +++KC  L  S  +F+ L        N M++    +
Sbjct: 621 MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHH 680

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G GE AL++F  M    +   +F+ S  L++   +  +E G Q H + IK GF+S+  V 
Sbjct: 681 GCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 740

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++ M+MY K G +    ++  +   R  +SWN ++    ++G   +  + F E+L+ G  
Sbjct: 741 NAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 800

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD +T  ++L ACN+GG VD+G+  + +M  E+GV PG EH  CIIDLL ++G+L  A  
Sbjct: 801 PDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEG 860

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
               MP  P    W S+L A  I+G+++L    AE +++L       Y L +   A  G+
Sbjct: 861 FIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGK 920

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           WE +  ++K M  N I K   CSW+ +K+++++F  GE  H    +I
Sbjct: 921 WEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRI 967



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 254/500 (50%), Gaps = 31/500 (6%)

Query: 49  HTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD----------N 96
           HT  G RCL+   +   G S+   Q+  +     CI  ++ L G+ +++          N
Sbjct: 86  HTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNL-GIFQTNTLINMYSKFGN 144

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           ++ A  VFDE+   +  SW++M+SGY   G  + A+ +F +M   GV P+GF  + L++ 
Sbjct: 145 IEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITA 204

Query: 157 VSS----ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            S     A  G Q+HG ++++G+ L +V +G +L+  YG +G++Y A  +F  M + +++
Sbjct: 205 CSRSGYMADEGFQVHGFVVKTGI-LGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVV 263

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW SL+ G  +SG     L+ +  MR  G S ++ T + V ++C  L +   G QV    
Sbjct: 264 SWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHI 323

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           ++ GF  +  V ++ I +FS  + +E++  +F+ ++  D    N MIS Y  +G    +L
Sbjct: 324 IQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESL 383

Query: 333 ELFQLM--LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
             F  M  L  +   T  +   +     +  ++ G   H + +K G DSN  + ++L+ +
Sbjct: 384 RCFHWMRHLHNETNSTTLSSL-LSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTL 442

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y++ G  + +  +F  + +RDL+SWN++M    Q+G+  + L +  ELL+ G   + +T 
Sbjct: 443 YSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTF 502

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID-LLCQAGQLG---KAIDIT 506
           A+ L AC+     +   L+ S +     ++ G   +  + + L+   G+LG   +A  + 
Sbjct: 503 ASALAACS-----NPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVL 557

Query: 507 STMPFQPGCSIWESILRASA 526
            TMP QP    W +++   A
Sbjct: 558 QTMP-QPDRVTWNALIGGHA 576



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 205/430 (47%), Gaps = 44/430 (10%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG + K G     Y+G   +  Y   G   +  +LF+E+P  N +SW            
Sbjct: 218 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSW------------ 265

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                               S++ GY+  G     L ++ +M+ +GV  +  TF    +T
Sbjct: 266 -------------------TSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF----AT 302

Query: 157 VSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           V+S+C        G Q+ G +I+ G   S V + NSLI M+     +  A  VF +M E 
Sbjct: 303 VTSSCGLLEDQVLGYQVLGHIIQYGFEDS-VSVANSLISMFSSFSSVEEACYVFDHMNEC 361

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           DIISWN++IS   + G    +L  F+ MR+     +  T+S +++ C+ + NL  G+ + 
Sbjct: 362 DIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIH 421

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L VK+G  SN  + +  + L+S+  R ED+  +F+ +   D    N M++ Y + G   
Sbjct: 422 GLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCL 481

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLM 388
             L++   +L+        T +  L++   P     S+  H++ I +GF    +V ++L+
Sbjct: 482 DGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALV 541

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MY K G +  + ++   + + D V+WN ++ G  +N    E +  ++ + E+G+P + I
Sbjct: 542 TMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYI 601

Query: 449 TLAAVLLACN 458
           T+ +VL AC+
Sbjct: 602 TMVSVLGACS 611


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/530 (29%), Positives = 281/530 (53%), Gaps = 5/530 (0%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           VF ++ EP++  WN+MI G  S    D A+ ++  M+  G  P+ FT   +L   +    
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 163 ---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
              G +IH  ++++G    +V +  SL+ +Y K      A  VF ++ + +++SW ++I+
Sbjct: 130 VRLGLKIHSLLVKAGYD-HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G  +SG+   A+  F  +   G  PD +++  V+ AC +L +   G+ +       G   
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGR 248

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           N  V ++ +D++ KC  LE +  +F  +   D    + MI  Y   G  + AL+LF  M 
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ 308

Query: 340 REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            E+++P  +T+  VLS+   +  ++ G    S+  ++ F SN V+ ++L++MY+K GS+ 
Sbjct: 309 SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVT 368

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + EIF  + ++D V WN +M+GL+ NG A     +F  + + G+ PD  T   +L  C 
Sbjct: 369 QAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           +GGFV++G   F+ MK  + + P  EHY C++DLL +AG L +A  + + MP +P   +W
Sbjct: 429 HGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVW 488

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            ++L    ++ D  L E V +++++L+  +   Y  L+  Y+   RWE   +++  M++ 
Sbjct: 489 GALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            I K+  CSWI I   ++ F  G+  H   +KIY  L  L  E++  G V
Sbjct: 549 QIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 180/356 (50%), Gaps = 9/356 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K DN D ALKVFD+IP+ +VVSW ++I+GY S G+   A+  F K+   G++P  F+  
Sbjct: 160 VKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLV 219

Query: 152 ILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L+    +     G+ I   +  SG+   NV +  SL+DMY K G L  A  +F  M E
Sbjct: 220 KVLAACARLGDCTSGEWIDRYISDSGMG-RNVFVATSLLDMYVKCGNLERANLIFSAMPE 278

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            DI+SW+++I G   +G  + ALD F+ M+     PD YT+  V++AC  L  LD G   
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWA 338

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            +L  +  FLSN ++ +A ID++SKC  +  +  +F  + R D  V N M+      G  
Sbjct: 339 SSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHA 398

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA--S 385
           +    LF L+ +  IRP E T   +L        V  G QF +  +K  F     +    
Sbjct: 399 KAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYG 457

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            ++++  + G ++ + ++   +  K + V W  ++ G   +        V ++L+E
Sbjct: 458 CMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIE 513



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 189/371 (50%), Gaps = 6/371 (1%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K IH  ++R  L   N +L N ++      G   Y+  VF  ++E +I  WN++I G  +
Sbjct: 33  KHIHARLLRLHLDQDNYLL-NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
               + A+  + SMR  G+ P+ +TI  V+ AC +  ++  G ++ +L VK G+  +  V
Sbjct: 92  KDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFV 151

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            ++ + L+ KC+  +D++++F+ +   +      +I+ Y   G    A+  F+ +L   +
Sbjct: 152 KTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGL 211

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +P  F+L  VL++   +     G         SG   N  VA+SL++MY K G+++ +  
Sbjct: 212 KPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANL 271

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           IF  + ++D+VSW+T++ G   NG   + LD+F ++  E L PD  T+  VL AC   G 
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 463 VDKGMLVFSAM-KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
           +D G+   S M + E+   P       +ID+  + G + +A +I + M  +    +W ++
Sbjct: 332 LDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMKRKDRV-VWNAM 388

Query: 522 LRASAIYGDVK 532
           +   ++ G  K
Sbjct: 389 MVGLSMNGHAK 399



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 35/180 (19%)

Query: 46  FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFD 105
           F ++  LG   +D+YS+ G+     ++F  + +K                          
Sbjct: 347 FLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRK-------------------------- 380

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH 162
                D V WN+M+ G +  G++     +FS ++  G+RP   TF  LL   +       
Sbjct: 381 -----DRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNE 435

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           G+Q   +M R      ++     ++D+ G+ G+L  A  +  NM  + + + W +L+ GC
Sbjct: 436 GRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGC 495


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 179/604 (29%), Positives = 300/604 (49%), Gaps = 37/604 (6%)

Query: 30   SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
            +  + + IHG + KLG +++  + N  L LYS  G S+D                     
Sbjct: 1063 NLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED--------------------- 1101

Query: 90   GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                      A  VF  + E D++SWNSM++ Y   G     L++ +++   G   +  T
Sbjct: 1102 ----------AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVT 1151

Query: 150  FSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            F+  L+  S+       K +H  +I +G     +++GN+L+ MYGKLG++  A  V   M
Sbjct: 1152 FASALAACSNPECLIESKIVHALIIVAGFH-DFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210

Query: 207  EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK-G 265
             + D ++WN+LI G   +     A+  +  +R  G   +  T+  V+ AC+   +L K G
Sbjct: 1211 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 1270

Query: 266  KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
              + A  V  GF S+  V ++ I +++KC  L  S  +F+ L        N M++    +
Sbjct: 1271 MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHH 1330

Query: 326  GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
            G GE AL++F  M    +   +F+ S  L++   +  +E G Q H + IK GF+S+  V 
Sbjct: 1331 GCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 1390

Query: 385  SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
            ++ M+MY K G +    ++  +   R  +SWN ++    ++G   +  + F E+L+ G  
Sbjct: 1391 NAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 1450

Query: 445  PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            PD +T  ++L ACN+GG VD+G+  + +M  E+GV PG EH  CIIDLL ++G+L  A  
Sbjct: 1451 PDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEG 1510

Query: 505  ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
                MP  P    W S+L A  I+G+++L    AE +++L       Y L +   A  G+
Sbjct: 1511 FIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGK 1570

Query: 565  WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
            WE +  ++K M  N I K   CSW+ +K+++++F  GE  H    +I   L  L    ++
Sbjct: 1571 WEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKE 1630

Query: 625  EGCV 628
             G V
Sbjct: 1631 AGYV 1634



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 154/574 (26%), Positives = 289/574 (50%), Gaps = 37/574 (6%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C+  K+      IH HL   GF +  +L  + +  Y + G         D I  +
Sbjct: 35  KILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVG---------DVIAAR 85

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N                      VFD +PE  VVSW +M+SGY+  G  + A  +FS M+
Sbjct: 86  N----------------------VFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR 123

Query: 140 LQGVRPSGFTF-SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             GV+ + FT+ S L +  S  C   G Q+ G  I+ G  + N+ + ++L+D + K G +
Sbjct: 124 HCGVKANQFTYGSALRACTSLRCLDMGIQVQGC-IQKGRFVENLFVKSALVDFHSKCGKM 182

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  M E D++SWN++I G    G+ + +   F SM   G  PD YT+  V+ A 
Sbjct: 183 EDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRAS 242

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +   L    Q+  +  ++G+ S  IV    I+ ++K   L  +  L + + + D     
Sbjct: 243 AEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSST 302

Query: 317 VMISTYGRYGFGEV-ALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
            +I+ Y   G   V AL+LF+ M + +I   +  L  +L+    +     G+Q H+ A+K
Sbjct: 303 ALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALK 362

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
                +  + ++L++MYAK+G I+ +   F ++++++++SW +++ G  ++G     + +
Sbjct: 363 YQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSL 422

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           ++++  +G  P+ +T  ++L AC++ G   +G   F+ M  +Y + P  EHY+C++DL  
Sbjct: 423 YKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFA 482

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G L +A ++   +  +   S+W +IL AS+IYG + L +  A  + ++Q  + + Y +
Sbjct: 483 RQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVV 542

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           L   Y+  G W+   +++K+M +    K  G S+
Sbjct: 543 LASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSF 576



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 254/500 (50%), Gaps = 31/500 (6%)

Query: 49   HTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD----------N 96
            HT  G RCL+   +   G S+   Q+  +     CI  ++ L G+ +++          N
Sbjct: 736  HTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNL-GIFQTNTLINMYSKFGN 794

Query: 97   LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
            ++ A  VFDE+   +  SW++M+SGY   G  + A+ +F +M   GV P+GF  + L++ 
Sbjct: 795  IEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITA 854

Query: 157  VSS----ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             S     A  G Q+HG ++++G+ L +V +G +L+  YG +G++Y A  +F  M + +++
Sbjct: 855  CSRSGYMADEGFQVHGFVVKTGI-LGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVV 913

Query: 213  SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            SW SL+ G  +SG     L+ +  MR  G S ++ T + V ++C  L +   G QV    
Sbjct: 914  SWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHI 973

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
            ++ GF  +  V ++ I +FS  + +E++  +F+ ++  D    N MIS Y  +G    +L
Sbjct: 974  IQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESL 1033

Query: 333  ELFQLM--LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
              F  M  L  +   T  +   +     +  ++ G   H + +K G DSN  + ++L+ +
Sbjct: 1034 RCFHWMRHLHNETNSTTLSSL-LSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTL 1092

Query: 391  YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
            Y++ G  + +  +F  + +RDL+SWN++M    Q+G+  + L +  ELL+ G   + +T 
Sbjct: 1093 YSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTF 1152

Query: 451  AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID-LLCQAGQLG---KAIDIT 506
            A+ L AC+     +   L+ S +     ++ G   +  + + L+   G+LG   +A  + 
Sbjct: 1153 ASALAACS-----NPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVL 1207

Query: 507  STMPFQPGCSIWESILRASA 526
             TMP QP    W +++   A
Sbjct: 1208 QTMP-QPDRVTWNALIGGHA 1226



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 205/430 (47%), Gaps = 44/430 (10%)

Query: 37   IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
            +HG + K G     Y+G   +  Y   G   +  +LF+E+P  N +SW            
Sbjct: 868  VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSW------------ 915

Query: 97   LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                                S++ GY+  G     L ++ +M+ +GV  +  TF    +T
Sbjct: 916  -------------------TSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTF----AT 952

Query: 157  VSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            V+S+C        G Q+ G +I+ G   S V + NSLI M+     +  A  VF +M E 
Sbjct: 953  VTSSCGLLEDQVLGYQVLGHIIQYGFEDS-VSVANSLISMFSSFSSVEEACYVFDHMNEC 1011

Query: 210  DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            DIISWN++IS   + G    +L  F+ MR+     +  T+S +++ C+ + NL  G+ + 
Sbjct: 1012 DIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIH 1071

Query: 270  ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             L VK+G  SN  + +  + L+S+  R ED+  +F+ +   D    N M++ Y + G   
Sbjct: 1072 GLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCL 1131

Query: 330  VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLM 388
              L++   +L+        T +  L++   P     S+  H++ I +GF    +V ++L+
Sbjct: 1132 DGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALV 1191

Query: 389  EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
             MY K G +  + ++   + + D V+WN ++ G  +N    E +  ++ + E+G+P + I
Sbjct: 1192 TMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYI 1251

Query: 449  TLAAVLLACN 458
            T+ +VL AC+
Sbjct: 1252 TMVSVLGACS 1261



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 39/228 (17%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS +++ C +  SF     IH    K   +    +GN  +D+Y++ G  +D  + FDE+ 
Sbjct: 338 CS-MLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME 396

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +KN I                               SW S+ISGYA  GY   A+ ++ K
Sbjct: 397 EKNVI-------------------------------SWTSLISGYAKHGYGHMAVSLYKK 425

Query: 138 MQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+ +G +P+  TF  LL   S       G +   +M+            + ++D++ + G
Sbjct: 426 MESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQG 485

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGY---GELALDQFYSMR 238
           +L  A+ +   ++ + +   W +++      GY   G+ A    ++M+
Sbjct: 486 LLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQ 533


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 305/547 (55%), Gaps = 19/547 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           ++ +L  A KVF+ + E  VV W  MI+ Y   G +  A+E+F  M   G  P G+T S 
Sbjct: 195 RNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV---LYYAFGVFLNM 206
           ++S  +   SA  G+Q+H  ++R GL +S+  +   L+DMY KL +   +  A  VF  M
Sbjct: 255 MVSACAEQGSAGLGQQLHSLVLRLGL-VSDTCVSCGLVDMYTKLQMEQSMECARKVFKRM 313

Query: 207 EELDIISWNSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
              +++SW +LISG    G  E  A++    M      P+  T S ++ AC  L + D G
Sbjct: 314 PTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSG 373

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +Q+ A  +K    + ++V +A + ++++   +E++ + F+QL   +    +  I   GR 
Sbjct: 374 RQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRS 433

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLS---SIPIPPVEHGSQFHSMAIKSGFDSNAV 382
                       +   D+  + FT + +LS   ++ +P    G Q H+++IK+GF+S+  
Sbjct: 434 N-----ASWSSQIESMDVGVSTFTFASLLSAAATVGLPT--KGQQLHALSIKTGFESDKG 486

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           +++SL+ MY++ G +D +   F ++ D  +++SW +I+  L ++G A   L +F +++  
Sbjct: 487 ISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILS 546

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ P+ +T  AVL AC++ G V +G   F +M++++ ++P  EHYAC++DLL ++G + +
Sbjct: 547 GVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQE 606

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A++  + MP +    +W+++L A   Y ++++ E  A  ++DL+   P PY LL+  YA 
Sbjct: 607 ALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAH 666

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            G W+ + R++ +MR   ++K TG SW+ + N I+ F AG+  H   Q+IY  L +L  E
Sbjct: 667 GGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIRE 726

Query: 622 MEDEGCV 628
           ++D G V
Sbjct: 727 IKDIGYV 733



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 229/487 (47%), Gaps = 31/487 (6%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE-PDVVSWNSMISGYASCGYSDY 130
           L  E+   + +  N  L    K  ++  A +VFD +    D+VSW +M       G    
Sbjct: 70  LGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQE 129

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVL 182
           AL +  +M   G+RP+ FT    L   + AC         G  + G  I++G   ++V +
Sbjct: 130 ALVLLGEMLESGLRPNAFT----LCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSV 185

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           G +LIDM+ + G L  A  VF  + E  ++ W  +I+     G    A++ F  M   G+
Sbjct: 186 GCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGF 245

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC---NRLED 299
            PD YT+S +++AC +  +   G+Q+ +L +++G +S++ V    +D+++K      +E 
Sbjct: 246 EPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMEC 305

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGE-VALELFQLMLREDIRPTEFTLSCVLSSIP 358
           + ++F+++   +      +IS Y + G  E  A+EL   ML E I P   T S +L +  
Sbjct: 306 ARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACA 365

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +   + G Q H+  +K+   +  VV ++L+ MYA++G ++ + + F +L +R+L+S ++
Sbjct: 366 NLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSS 425

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
               + + GR+  +     E ++ G+     T A++L A    G   KG  +  A+  + 
Sbjct: 426 ---DIGETGRSNASWSSQIESMDVGVST--FTFASLLSAAATVGLPTKGQQLH-ALSIKT 479

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           G    +     ++ +  + G L  A      M        W SI+ A A +G        
Sbjct: 480 GFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGH------- 532

Query: 538 AERMMDL 544
           AER + L
Sbjct: 533 AERALSL 539



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 161/329 (48%), Gaps = 17/329 (5%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-DIISWNSLISGC 221
           G+ +H  ++ + +  ++ ++ NSL+ MY K G +  A  VF  M  L D++SW ++    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL-DKGKQVFALSVKVGFLSN 280
             +G  + AL     M  SG  P+ +T+    +AC         G  V   ++K GF   
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGT 181

Query: 281 SI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
            + V  A ID+F++   L  + ++F  L      V  +MI+ Y + G    A+ELF  ML
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 340 REDIRPTEFTLSCVLSSIPIPPVEHGS-----QFHSMAIKSGFDSNAVVASSLMEMYAK- 393
            +   P  +T+S ++S+      E GS     Q HS+ ++ G  S+  V+  L++MY K 
Sbjct: 242 EDGFEPDGYTMSSMVSAC----AEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKL 297

Query: 394 --TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ-NGRAAETLDVFEELLEEGLPPDRITL 450
               S++ + ++F ++   +++SW  ++ G  Q  G+    +++  E+L E + P+ +T 
Sbjct: 298 QMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTY 357

Query: 451 AAVLLACNYGGFVDKGMLVFS-AMKEEYG 478
           +++L AC      D G  + +  MK   G
Sbjct: 358 SSLLKACANLSDQDSGRQIHARVMKTSIG 386



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 54/256 (21%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFA---------------KTIHGHLFKLGFNAHTYLGNRC 56
           +++ S+ SQ+    +   +F FA               + +H    K GF +   + N  
Sbjct: 432 RSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSL 491

Query: 57  LDLYSRFGTSDDVLQLFDEIP-QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSW 115
           + +YSR G  DD  + FDE+    N ISW                               
Sbjct: 492 VSMYSRCGYLDDACRAFDEMEDDHNVISW------------------------------- 520

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIR 172
            S+IS  A  G+++ AL +F  M L GV+P+  T+  +LS  S       GK+   SM +
Sbjct: 521 TSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQK 580

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGE 228
               +  +     ++D+  + G++  A      M  + D + W +L+  C    N   GE
Sbjct: 581 DHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGE 640

Query: 229 LALDQFYSMRYSGYSP 244
           +A      +     +P
Sbjct: 641 IAARHVIDLEPQDPAP 656


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/532 (32%), Positives = 285/532 (53%), Gaps = 16/532 (3%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLSTVSSACH--- 162
           +P  D +SWNS ISG    G  +    +F ++   G+    + F    L+TV +AC    
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGI----YQFDQATLTTVLTACDKPE 56

Query: 163 ----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
                K IH  +   G     + +GN+LI  Y + G       VF  M E ++++W ++I
Sbjct: 57  FCYVSKMIHSLVFLYGYE-REITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVI 115

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           SG     + E +L  F  MR     P+  T    + AC+ L+ + +G+Q+  L  K+G  
Sbjct: 116 SGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVH 175

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +  + SA +D++SKC  LED+ ++FE  +  D   + V++    + GF E ++++F  M
Sbjct: 176 FDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKM 235

Query: 339 LREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           ++  +      +S +L    I   +  G Q HS+ IK  F SN  V + L+ MY+K G +
Sbjct: 236 VKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDL 295

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D S +IF  + +R+ VSWN+++    ++G  +  L ++EE+  EG+ P  +T  ++L AC
Sbjct: 296 DDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHAC 355

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
            + G V+KGM    +M ++YG+ P  EHYAC++D++ +AG L +A      +P +PG  +
Sbjct: 356 AHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILV 415

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLP-SPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           W+++L A +I+G+ ++ +  A ++  LQ P SP PY LL   Y+  G+W+   R  K M+
Sbjct: 416 WQALLGACSIHGNSEMGKYAANQLF-LQAPESPAPYILLANIYSSEGKWKERARTIKKMK 474

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             G+ K TG SWI I+ +I++F   +  H   + IY VL  L   M DEG V
Sbjct: 475 DMGVTKETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYV 526



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 195/398 (48%), Gaps = 32/398 (8%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           +K IH  +F  G+     +GN  +  Y R G      ++FDE+ +KN ++W   + GL +
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
               + +LK+F ++ +  V   NS+           Y   + +   LQ +R         
Sbjct: 121 GQFYEESLKLFGKMRDGPVDP-NSLT----------YLSSLMACSGLQAIR--------- 160

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
                    G+QIHG + + G+   ++ + ++L+DMY K G L  A+ +F + EE+D +S
Sbjct: 161 --------EGRQIHGLVWKLGVHF-DLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVS 211

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
              ++ G   +G+ E ++  F  M  +G   D   IS ++       +L  GKQ+ +L +
Sbjct: 212 MTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLII 271

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K  F SN  V +  I+++SKC  L+DS+++F  + + +    N MI+ + R+G G  AL+
Sbjct: 272 KKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQ 331

Query: 334 LFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEMY 391
           L++ M  E + PT+ T LS + +   +  VE G  F  SMA   G        + +++M 
Sbjct: 332 LYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMM 391

Query: 392 AKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRA 428
            + G ++ + +   +L +K  ++ W  ++   + +G +
Sbjct: 392 GRAGLLNEAKKFIERLPEKPGILVWQALLGACSIHGNS 429



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 138/307 (44%), Gaps = 37/307 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           ++   V+  SL+Y S L+  C   ++    + IHG ++KLG +    + +  +D+YS+ G
Sbjct: 134 MRDGPVDPNSLTYLSSLM-ACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCG 192

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           + +D              +W                 K+F+   E D VS   ++ G A 
Sbjct: 193 SLED--------------AW-----------------KIFESAEEVDEVSMTVILVGLAQ 221

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVV 181
            G+ + ++++F KM   GV       S +L      +S   GKQIH  +I+     SN  
Sbjct: 222 NGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFG-SNYF 280

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N LI+MY K G L  +  +F  M + + +SWNS+I+     G G  AL  +  MR  G
Sbjct: 281 VNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEG 340

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
             P + T   +++AC  +  ++KG     +++   G        +  +D+  +   L ++
Sbjct: 341 VWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEA 400

Query: 301 VRLFEQL 307
            +  E+L
Sbjct: 401 KKFIERL 407



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 54/221 (24%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    K IH  + K  F ++ ++ N  +++YS+ G                         
Sbjct: 259 SLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCG------------------------- 293

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                 +LD ++K+F  +P+ + VSWNSMI+ +A  G    AL+++ +M+L+GV P+  T
Sbjct: 294 ------DLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVT 347

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGVLYY 198
           F  LL     AC     H  ++  G+     +  +            ++DM G+ G+L  
Sbjct: 348 FLSLL----HAC----AHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNE 399

Query: 199 AFGVFLNM-EELDIISWNSLISGCF---NSGYGELALDQFY 235
           A      + E+  I+ W +L+  C    NS  G+ A +Q +
Sbjct: 400 AKKFIERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLF 440


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 170/536 (31%), Positives = 284/536 (52%), Gaps = 13/536 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLSTVS 158
           A +VFD   E D VSWNS++SGY   G  +  L++FS M   G+  + F   SI+    S
Sbjct: 157 ARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCAS 216

Query: 159 SACHGKQI----HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
            +  G+ I    HG ++++GL  +++ L +++IDMY K G L  A  +F ++ + ++I +
Sbjct: 217 GSDVGRHIAEAVHGCVVKAGLD-ADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVF 275

Query: 215 NSLISG-CFNSG-----YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           N++I+G C +           AL  +  M+  G  P E+T S ++ AC        GKQ+
Sbjct: 276 NAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQI 335

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K  F  +  + SA IDL+S    +ED  R F  L + D      MIS   +    
Sbjct: 336 HGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELF 395

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSL 387
           E AL LFQ  +   ++P  FT+S V+++     V   G Q   +AIK GF+    + +S 
Sbjct: 396 EKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSF 455

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + M A++G +D+ T  F +++ RD+VSW+ ++    Q+G A + L +F E++   + P+ 
Sbjct: 456 IHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNE 515

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   VL AC++GG VD G+  +  MK EYG+ P  +H  C++DLL +AG+L  A     
Sbjct: 516 VTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIR 575

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
              F     +W S+L +  I+GD++  + VA+++MDL+  S   Y +L   Y   G    
Sbjct: 576 DSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSL 635

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
             + + +M++ G+ K  G SWI +++ +++F AG+  H     IY  L  +  ++E
Sbjct: 636 ASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIE 691



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 188/371 (50%), Gaps = 14/371 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A ++ DE+P  + VS+N +IS Y+  G    ALE F++ +   G+R   FT++  L+  S
Sbjct: 55  AARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACS 114

Query: 159 SACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
            A     GK +H   +  GL  + V L NSL  MY   G +  A  VF   EE D +SWN
Sbjct: 115 RALDLRTGKAVHAMTVLDGLG-NGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWN 173

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK--GKQVFALSV 273
           SL+SG   +G  E  L  F  M + G   + + +  +I  C    ++ +   + V    V
Sbjct: 174 SLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVV 233

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR------YGF 327
           K G  ++  + SA ID+++K   L ++V LF+ +   +  V N MI+ + R         
Sbjct: 234 KAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEV 293

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASS 386
              AL L+  M    ++P+EFT S +L +  +      G Q H   +K  F  +  + S+
Sbjct: 294 SREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSA 353

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+++Y+ +G ++     F  L K+D+V+W +++ G  QN    + L +F+E +  GL PD
Sbjct: 354 LIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPD 413

Query: 447 RITLAAVLLAC 457
             T+++V+ AC
Sbjct: 414 LFTMSSVMNAC 424



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 225/468 (48%), Gaps = 58/468 (12%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +HG + K G +A  +L +  +D+Y++ G   + + LF  +P                
Sbjct: 225 AEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVP---------------- 268

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGY----ASCG--YSDYALEMFSKMQLQGVRPSG 147
                          +P+V+ +N+MI+G+    A+ G   S  AL ++S+MQ +G++PS 
Sbjct: 269 ---------------DPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSE 313

Query: 148 FTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTFS +L   + A     GKQIHG +++      + + G++LID+Y   G +   +  F 
Sbjct: 314 FTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYI-GSALIDLYSDSGCMEDGYRCFR 372

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           ++ + DI++W S+ISGC  +   E AL  F      G  PD +T+S V+NAC  L     
Sbjct: 373 SLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVART 432

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+Q+  L++K GF   + + ++ I + ++   ++   R F++++  D    + +IS++ +
Sbjct: 433 GEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQ 492

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS-MAIKSGFDSNAV 382
           +G    AL +F  M+   + P E T   VL++      V+ G +++  M  + G      
Sbjct: 493 HGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIK 552

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             + ++++  + G + +  E F++      D V W +++     +G       V +++++
Sbjct: 553 HVTCVVDLLGRAGRL-ADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMD 611

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSA----MKEEYGVM--PG 482
             L P       +L    Y  ++D G L  ++    + +E GV   PG
Sbjct: 612 --LEPTSSASYVIL----YNMYLDAGELSLASKTRDLMKERGVKKEPG 653



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 161/322 (50%), Gaps = 15/322 (4%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV--LYYAFGVFLNMEELD 210
           LL + ++  H   +H  + R+  + S + L NSL+  Y +LGV    +A  +   M   +
Sbjct: 8   LLRSCTALPHVAAVHAHIARAHPTAS-LFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRN 66

Query: 211 IISWNSLISGCFNSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            +S+N LIS    +G    AL+ F  +   +G   D +T +  + AC++  +L  GK V 
Sbjct: 67  AVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVH 126

Query: 270 ALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
           A++V  G L N + LS ++  +++ C  + ++ R+F+  +  D    N ++S Y R G  
Sbjct: 127 AMTVLDG-LGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAR 185

Query: 329 EVALELFQLMLREDIRPTEFTLSCVL---SSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
           E  L++F LM    +    F L  ++   +S            H   +K+G D++  +AS
Sbjct: 186 EETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLAS 245

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA------ETLDVFEELL 439
           ++++MYAK G++ ++  +F  +   +++ +N ++ G  ++  A       E L ++ E+ 
Sbjct: 246 AMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQ 305

Query: 440 EEGLPPDRITLAAVLLACNYGG 461
             G+ P   T +++L ACN  G
Sbjct: 306 SRGMQPSEFTFSSILRACNLAG 327



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 36/301 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C     F F K IHG + K  F+   Y+G+  +DLYS  G  +D  + F  +P+
Sbjct: 317 SSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPK 376

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++W   + G ++++  + AL++F E                 S  Y           
Sbjct: 377 QDIVTWTSMISGCVQNELFEKALRLFQE-----------------SICY----------- 408

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  FT S +++  +S   A  G+QI    I+ G +     +GNS I M  + G 
Sbjct: 409 ---GLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFN-RFTAMGNSFIHMCARSGD 464

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +      F  ME  D++SW+++IS     G    AL  F  M  +  +P+E T   V+ A
Sbjct: 465 VDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTA 524

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           C+    +D G + + +      LS +I  ++  +DL  +  RL D+          D AV
Sbjct: 525 CSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAV 584

Query: 315 I 315
           +
Sbjct: 585 V 585



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 15/220 (6%)

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP 358
           + RL +++ R +    N++IS+Y R G    ALE F        +R   FT +  L++  
Sbjct: 55  AARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACS 114

Query: 359 IP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
               +  G   H+M +  G  +   +++SL  MYA  G +  +  +F   ++ D VSWN+
Sbjct: 115 RALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNS 174

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK-------GMLVF 470
           ++ G  + G   ETL VF  +   GL  +   L +++  C  G  V +       G +V 
Sbjct: 175 LLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVK 234

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           + +  +  +       + +ID+  + G L  A+ +  ++P
Sbjct: 235 AGLDADLFLA------SAMIDMYAKRGALTNAVALFKSVP 268



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 54/241 (22%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S +++ C S       + I     K GFN  T +GN  + + +R G  D V +
Sbjct: 411 KPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTR 470

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+  ++ +SW                               +++IS +A  G +  A
Sbjct: 471 RFQEMESRDVVSW-------------------------------SAVISSHAQHGCARDA 499

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG-------- 183
           L +F++M    V P+  TF  +L+  S        HG ++  GL    ++          
Sbjct: 500 LRIFNEMMNAKVAPNEVTFLNVLTACS--------HGGLVDDGLRYYEIMKNEYGLSPTI 551

Query: 184 ---NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSG---YGELALDQFYS 236
                ++D+ G+ G L  A     +     D + W SL++ C   G    G+L  DQ   
Sbjct: 552 KHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMD 611

Query: 237 M 237
           +
Sbjct: 612 L 612


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 173/599 (28%), Positives = 305/599 (50%), Gaps = 37/599 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IH  +   G   +T+L N  ++ Y   G   D  Q+F   P KN              
Sbjct: 41  QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKN-------------- 86

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            VVSW  +ISG A       A+++F +M +   +P+  T S +L
Sbjct: 87  -----------------VVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVL 129

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              ++       K +H   +R G    NV +  +L+DMY K G +  A  +F +M E ++
Sbjct: 130 PAFANLGLIRIAKSVHCFWVRGGFE-GNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           ++WN+++SG  + G+ E A+D F  MR  G   D YTI  +I A   +  L  G  +   
Sbjct: 189 VTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            ++ G+ ++  + +A +D++   N ++D+ R+F ++   D A   +M++ +      + A
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 332 LELFQLMLR-EDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ++ F  ML  ++++     L  +LSS      ++ G + H++AIK+ F +N  V S++++
Sbjct: 309 IKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYA  G+++ +   F  + ++D+V WN ++ G   NG   + +D+F ++   GL PD  T
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             +VL AC++ G V +G+ +F  M +   V+P  +HYAC+ID+L +AGQL  A    + M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PFQP   ++ ++L A  I+G++KL   +++++ +++      Y LL+  YA+ G WE + 
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVK 548

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             +  +R   + K  G S I I   IYTF AGE  H    KI  +L+ L  +++  G V
Sbjct: 549 MTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYV 607



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 180/373 (48%), Gaps = 38/373 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           AK++H    + GF  + ++    +D+YS+FG      QLF+ + ++N ++          
Sbjct: 141 AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVT---------- 190

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSI 152
                                WN+++SGY+  G+S+ A+++F+ M+ +G+    +T  S+
Sbjct: 191 ---------------------WNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSL 229

Query: 153 LLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           + +++S  C   G  IHG +IR+G   ++  +  +L+D+Y     +  A  VF  M   D
Sbjct: 230 IPASLSVGCLQVGTGIHGFIIRTGYE-NDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKD 288

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + +W  +++G  +  + + A+  F  M        D   +  ++++C+    L +G++V 
Sbjct: 289 VAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVH 348

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           AL++K  F +N  V SA ID+++ C  LED+ R F  +   D    N MI+  G  G+G 
Sbjct: 349 ALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGT 408

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSL 387
            A++LF  M    + P E T   VL +      V  G Q F+ M   S    N    + +
Sbjct: 409 DAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACV 468

Query: 388 MEMYAKTGSIDSS 400
           +++  + G +D++
Sbjct: 469 IDILGRAGQLDAA 481



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 147/326 (45%), Gaps = 40/326 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI   LS         IHG + + G+    ++    +D+Y      DD  ++F E+  K+
Sbjct: 229 LIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKD 288

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             +W + L G     + D A+K F+++                              + +
Sbjct: 289 VAAWTLMLTGFSSGRHWDRAIKHFNKM------------------------------LGI 318

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           Q ++        +LS+ S +     G+++H   I++  + +N+ +G+++IDMY   G L 
Sbjct: 319 QNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFA-NNIFVGSAVIDMYANCGNLE 377

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  M E D++ WN++I+G   +GYG  A+D F  M+ SG  PDE T   V+ AC+
Sbjct: 378 DAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACS 437

Query: 258 KLRNLDKGKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVI 315
               + +G Q+F   VK    + N    +  ID+  +  +L+ +      +  + D+ V 
Sbjct: 438 HAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVY 497

Query: 316 NVMIST---YGRYGFG-EVALELFQL 337
           + ++     +G    G E++ ++F++
Sbjct: 498 STLLGACRIHGNIKLGHEISQKIFEM 523


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 262/465 (56%), Gaps = 3/465 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +HGS +++ +        N+L+DMY K GVL  A  VF  M    +++W SLI+   
Sbjct: 17  GRAVHGSGVKACVHWK-TTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYA 75

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G  + A+  F+ M   G SPD +TI+ V++AC    +L+ GK V     +    SN  
Sbjct: 76  REGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIF 135

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D+++KC  +ED+  +F ++   D    N MI  Y +      AL LF  M+ E 
Sbjct: 136 VCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE- 194

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++P   TL+C+L +   +  ++ G + H   +++GF S+  VA++L++MY K G    + 
Sbjct: 195 MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLAR 254

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  +  +DL++W  ++ G   +G     +  F E+ + G+ PD ++  ++L AC++ G
Sbjct: 255 LLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSG 314

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   F+ M++E  V P  EHYACI+DLL ++G+L  A     +MP +P  +IW ++
Sbjct: 315 LLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGAL 374

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L    I+ DVKL E VAE + +L+  +   Y LL   YA   +WE + ++++ + + G+ 
Sbjct: 375 LSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLK 434

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           K  GCSWI +K++++ F AG   H   +KI ++L+ L  +M++EG
Sbjct: 435 KNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEG 479



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 147/284 (51%), Gaps = 10/284 (3%)

Query: 79  KNCISW-----NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           K C+ W     N  L    K   LD A+ VFD +    VV+W S+I+ YA  G SD A+ 
Sbjct: 26  KACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIR 85

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F +M  +GV P  FT + +L   +   S  +GK +H + IR     SN+ + N+L+DMY
Sbjct: 86  LFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH-NYIRENDMQSNIFVCNALMDMY 144

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  VFL M   DIISWN++I G   +     AL  F  M      PD  T++
Sbjct: 145 AKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLA 203

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++ AC  L +LD+GK+V    ++ GF S+  V +A +D++ KC     +  LF+ +   
Sbjct: 204 CILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTK 263

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
           D     VMI+ YG +GFG  A+  F  M +  I P E +   +L
Sbjct: 264 DLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISIL 307



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 117/216 (54%), Gaps = 2/216 (0%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ AC    ++  G+ V    VK      +   +  +D+++KC  L+ ++ +F+ +    
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHS 370
                 +I+ Y R G  + A+ LF  M RE + P  FT++ VL +      +E+G   H+
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
              ++   SN  V ++LM+MYAK GS++ +  +F+++  +D++SWNT++ G ++N    E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            L +F +++ E + PD  TLA +L AC     +D+G
Sbjct: 184 ALSLFGDMVLE-MKPDGTTLACILPACASLASLDRG 218



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 36/254 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    S +  K +H ++ +    ++ ++ N  +D+Y++ G+ +D   +F E+P 
Sbjct: 103 TTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPV 162

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ ISW                               N+MI GY+     + AL +F  M
Sbjct: 163 KDIISW-------------------------------NTMIGGYSKNSLPNEALSLFGDM 191

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L+ ++P G T + +L   ++++S   GK++HG ++R+G   S+  + N+L+DMY K GV
Sbjct: 192 VLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGF-FSDQQVANALVDMYVKCGV 249

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  +F  +   D+I+W  +I+G    G+G  A+  F  MR +G  PDE +   ++ A
Sbjct: 250 PVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYA 309

Query: 256 CTKLRNLDKGKQVF 269
           C+    LD+G + F
Sbjct: 310 CSHSGLLDEGWRFF 323



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 51/213 (23%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S  S D  K +HGH+ + GF +   + N  +D+Y + G       LFD IP K+
Sbjct: 205 ILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKD 264

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I+W +                               MI+GY   G+ + A+  F++M+ 
Sbjct: 265 LITWTV-------------------------------MIAGYGMHGFGNNAITTFNEMRQ 293

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDM 189
            G+ P   +F  +L   S        H  ++  G    NV+               ++D+
Sbjct: 294 AGIEPDEVSFISILYACS--------HSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDL 345

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
             + G L  A+    +M  E D   W +L+SGC
Sbjct: 346 LARSGKLAMAYKFIKSMPIEPDATIWGALLSGC 378



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           V  G   H   +K+         ++L++MYAK G +D +  +F  +  R +V+W +++  
Sbjct: 14  VSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAA 73

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
             + G + E + +F E+  EG+ PD  T+  VL AC   G ++ G  V + ++E
Sbjct: 74  YAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRE 127


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 191/639 (29%), Positives = 313/639 (48%), Gaps = 66/639 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + ++  C +         +H H  K  F A   +    LD+Y+            
Sbjct: 280 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYA------------ 327

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                              K DN+  A  +FD     +  S+N+MI+GY+   +   AL 
Sbjct: 328 -------------------KCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALL 368

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSL 186
           +F ++   G+   GF   I LS V  AC        G QI+G  I+S LSL +V + N+ 
Sbjct: 369 LFHRLMSSGL---GFD-EISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL-DVCVANAA 423

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           IDMYGK   L  AF VF  M   D +SWN++I+    +G G   L  F SM  S   PDE
Sbjct: 424 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 483

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL--- 303
           +T   ++ ACT   +L  G ++ +  VK G  SNS V  + ID++SKC  +E++ ++   
Sbjct: 484 FTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 542

Query: 304 ----------FEQLDRWDYAVI-------NVMISTYGRYGFGEVALELFQLMLREDIRPT 346
                      E+L++     +       N +IS Y      E A  LF  M+   I P 
Sbjct: 543 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 602

Query: 347 EFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           +FT + VL +   +     G Q H+  IK    S+  + S+L++MY+K G +  S  +F 
Sbjct: 603 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE 662

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
           K  +RD V+WN ++ G   +G+  E + +FE ++ E + P+ +T  ++L AC + G +DK
Sbjct: 663 KSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDK 722

Query: 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525
           G+  F  MK +YG+ P   HY+ ++D+L ++G++ +A+++   MPF+    IW ++L   
Sbjct: 723 GLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVC 782

Query: 526 AIY-GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
            I+  +V++ E     ++ L       Y+LL+  YA  G WE +  +++ MR   + K  
Sbjct: 783 TIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEP 842

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           GCSW+ +K+ ++ F  G+  H   ++IY  L L+  EM+
Sbjct: 843 GCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 881



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/569 (28%), Positives = 283/569 (49%), Gaps = 27/569 (4%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
            VN  S +  S +   C    + +  K  H H+   GF   T++ N  L +Y+       
Sbjct: 42  QVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVS 101

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
              +FD++P ++ +SWN  + G  KS+++  A   F+ +P  DVVSWNSM+SGY   G S
Sbjct: 102 ASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGES 161

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNS 185
             ++E+F  M  +G+   G TF+I+L   S       G QIHG ++R G   ++VV  ++
Sbjct: 162 LKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCD-TDVVAASA 220

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           L+DMY K      +  VF  + E + +SW+++I+GC  +    LAL  F  M+       
Sbjct: 221 LLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVS 280

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           +   + V+ +C  L  L  G Q+ A ++K  F ++ IV +AT+D+++KC+ ++D+  LF+
Sbjct: 281 QSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFD 340

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
             +  +    N MI+ Y +   G  AL LF  ++   +   E +LS V  +   +  +  
Sbjct: 341 NSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSE 400

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q + +AIKS    +  VA++ ++MY K  ++  +  +F ++ +RD VSWN I+    Q
Sbjct: 401 GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQ 460

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           NG+  ETL +F  +L   + PD  T  ++L AC  GG +  GM + S++ +  G+     
Sbjct: 461 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSS 518

Query: 485 HYACIIDLLCQAGQLGKA----------IDITSTMP---------FQPGCSIWESILRAS 525
               +ID+  + G + +A           +++ TM           Q  C  W SI+   
Sbjct: 519 VGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGY 578

Query: 526 AIYGDVKLTENVAERMMDLQL-PSPLPYS 553
            +    +  + +  RMM++ + P    Y+
Sbjct: 579 VMKEQSEDAQMLFTRMMEMGITPDKFTYA 607



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 24/381 (6%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           +L+VF  IPE + VSW+++I+G         AL+ F +MQ      S   ++ +L + ++
Sbjct: 234 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 293

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G Q+H   ++S  +   +V   +L DMY K   +  A  +F N E L+  S+N+
Sbjct: 294 LSELRLGGQLHAHALKSDFAADGIVRTATL-DMYAKCDNMQDAQILFDNSENLNRQSYNA 352

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G     +G  AL  F+ +  SG   DE ++S V  AC  ++ L +G Q++ L++K  
Sbjct: 353 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSS 412

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              +  V +A ID++ KC  L ++ R+F+++ R D    N +I+ + + G G   L LF 
Sbjct: 413 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 472

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            MLR  I P EFT   +L +     + +G + HS  +KSG  SN+ V  SL++MY+K G 
Sbjct: 473 SMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGM 532

Query: 397 IDSSTEIFVKLDKRD--------------------LVSWNTIMMGLTQNGRAAETLDVFE 436
           I+ + +I  +  +R                      VSWN+I+ G     ++ +   +F 
Sbjct: 533 IEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 592

Query: 437 ELLEEGLPPDRITLAAVLLAC 457
            ++E G+ PD+ T A VL  C
Sbjct: 593 RMMEMGITPDKFTYATVLDTC 613


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 279/509 (54%), Gaps = 13/509 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL- 154
           +++ A  VFD+I +  V  WNSMI GY + G    AL M+ +MQ +G  P  FTF  +L 
Sbjct: 54  DIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLK 113

Query: 155 --STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             S +    +G+ +H  ++++G  L +V   + L++MY   G L     VF  + + +++
Sbjct: 114 VCSIIDLLVYGQSVHNRIVKTGFEL-DVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 172

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +W SLI+G  N+   + AL  F  M   G  P+E T++  + A  + R++  GK V    
Sbjct: 173 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRL 232

Query: 273 VKVGF-------LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            ++GF         N I+ +A +D+++KC +L  +  LF+++ + +  V N MIS Y +Y
Sbjct: 233 RQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQY 292

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G G  AL LF  M      P + T   V+S+   +     G   H+ A+++ F     + 
Sbjct: 293 GRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIG 352

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-L 443
           ++LM+MYAK G  D++ +IF KL K+D+++W T++ GL   G+  E L+VF  + EE  +
Sbjct: 353 TALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEV 412

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD+IT  AVL AC++ G V++G   F++M E YG+ P  EHY C+IDLL +AG   +A 
Sbjct: 413 APDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAE 472

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           ++   MP QP  +I  SIL    +YG+V L   V   +++L+  S   Y LL+  +A   
Sbjct: 473 ELLMKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKAC 532

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
            W+ +   + +++   I K  G S++ IK
Sbjct: 533 NWQEMKLARDMLKHKNIGKTLGNSFVEIK 561



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 196/400 (49%), Gaps = 21/400 (5%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYG--KLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           KQIH  MI + + + N++  + LID     +LG + YA  VF  + +  +  WNS+I G 
Sbjct: 22  KQIHSLMITTSV-VKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGY 80

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            N G    AL  +  M+  G+SPD +T   V+  C+ +  L  G+ V    VK GF  + 
Sbjct: 81  CNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDV 140

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
              S  ++++  C  L   +++FE + +W+      +I+ +      + AL LF+ M  E
Sbjct: 141 YTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENE 200

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS-------NAVVASSLMEMYAK 393
            + P E T++  L++      +  G   H    + GFD        N ++A+++M+MYAK
Sbjct: 201 GVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAK 260

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G + ++  +F K+ +R+LV WN+++   +Q GR AE L +F ++   G  P++ T  +V
Sbjct: 261 CGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSV 320

Query: 454 LLACNYGGFVDKGM-LVFSAMKEEYGVMPGEEHYA---CIIDLLCQAGQLGKAIDITSTM 509
           + AC + GF   G  L   A++  +      E  A    ++D+  +AG    A+ I S +
Sbjct: 321 ISACTHMGFRSTGRSLHARALRASF-----HEFVAIGTALMDMYAKAGDADTALKIFSKL 375

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
             +     W +++   AI G  K   NV  RM +    +P
Sbjct: 376 R-KKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAP 414



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 177/388 (45%), Gaps = 45/388 (11%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + +++H  + K GF    Y  +  L++Y   G  +  L++F+ IP+ N ++W   + G +
Sbjct: 123 YGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFV 182

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
            +D    AL++F +                               M+ +GV P+  T   
Sbjct: 183 NNDQPKEALRLFKD-------------------------------MENEGVEPNEIT-MT 210

Query: 153 LLSTVSSACH----GKQIHGSMIRSGL------SLSNVVLGNSLIDMYGKLGVLYYAFGV 202
                ++ C     GK +H  + + G       S  NV+L  +++DMY K G L  A  +
Sbjct: 211 TALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNL 270

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M + +++ WNS+IS     G G  AL  F  M  +G+ P++ T   VI+ACT +   
Sbjct: 271 FDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFR 330

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+ + A +++  F     + +A +D+++K    + ++++F +L + D      MIS  
Sbjct: 331 STGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGL 390

Query: 323 GRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGS-QFHSMAIKSGFDS 379
              G G+ AL +F+ M  E ++ P + T   VL +   +  VE G  QF SM    G + 
Sbjct: 391 AIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEP 450

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKL 407
                  ++++ ++ G    + E+ +K+
Sbjct: 451 TMEHYGCMIDLLSRAGHSKEAEELLMKM 478



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 135/275 (49%), Gaps = 20/275 (7%)

Query: 55  RCLDLYSRFGTSDDVLQL-FDEIPQKNCISWNICLRGLL-----KSDNLDTALKVFDEIP 108
           RC D+++     D + QL FD     +C  +N+ L   +     K   L TA  +FD++P
Sbjct: 218 RCRDIHTGKLVHDRLRQLGFDPFDTNSC--FNVILATAIMDMYAKCGKLVTARNLFDKMP 275

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------ 162
           + ++V WNSMIS Y+  G    AL +F  M++ G  P+  TF   LS +S+  H      
Sbjct: 276 QRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATF---LSVISACTHMGFRST 332

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +H   +R+      V +G +L+DMY K G    A  +F  + + D+++W ++ISG  
Sbjct: 333 GRSLHARALRASFH-EFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLA 391

Query: 223 NSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKV-GFLSN 280
             G G+ AL+ F  M      +PD+ T   V+ AC+ L  +++G++ F    +V G    
Sbjct: 392 IQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPT 451

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
                  IDL S+    +++  L  ++     A I
Sbjct: 452 MEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNATI 486



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 87/183 (47%), Gaps = 8/183 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C         +++H    +  F+    +G   +D+Y++ G +D  L++F ++ +K+
Sbjct: 320 VISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKLRKKD 379

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPE-----PDVVSWNSMISGYASCGYSDYALEMF 135
            ++W   + GL        AL VF  + E     PD +++ +++   +  G  +   + F
Sbjct: 380 VMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQF 439

Query: 136 SKM-QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL--IDMYGK 192
           + M ++ G+ P+   +  ++  +S A H K+    +++     +  +L + L   +MYG 
Sbjct: 440 TSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNATILSSILNGCEMYGN 499

Query: 193 LGV 195
           +G+
Sbjct: 500 VGL 502


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 172/542 (31%), Positives = 280/542 (51%), Gaps = 32/542 (5%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-----KQIHGS 169
           W   I   A+ G+   A+ +F +M+      S    S+  +  S A  G       +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYY---------------AF----GVFLNMEELD 210
            IRSG + ++    N+L+++Y K+   Y                AF     VF  M E D
Sbjct: 76  AIRSG-AFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD 134

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SWN+L+ GC   G    AL     M   G+ PD +T+S V+    +  ++ +G +V  
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHG 194

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            + + GF S+  V S+ ID+++ C R + SV++F+ L   D+ + N +++   + G  E 
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEE 254

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVASS 386
           AL +F+ ML+  +RP   T S   S IP+      +  G Q H+  I  GF+ N  ++SS
Sbjct: 255 ALGIFRRMLQAGVRPVPVTFS---SLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSS 311

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MY K G I  +  IF K+   D+VSW  ++MG   +G A E L +FE +      P+
Sbjct: 312 LIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPN 371

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT  AVL AC++ G VDKG   F +M   YG++P  EH+A + D L +AG+L +A +  
Sbjct: 372 HITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFI 431

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
           S M  +P  S+W ++LRA  ++ +  L E VA+++M+L+  S   + +L+  Y+  GRW 
Sbjct: 432 SKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWN 491

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               +++ MRK G+ K   CSWI +K++++ F A +  H    +I   L   + +M  EG
Sbjct: 492 EAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREG 551

Query: 627 CV 628
            V
Sbjct: 552 HV 553



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 198/421 (47%), Gaps = 12/421 (2%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN-LDT 99
           L  LG + H  L  R      RF T++ +L L+ ++P     S  + +  +  S    ++
Sbjct: 65  LSALGASLHA-LAIRSGAFADRF-TANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFES 122

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
             KVFDE+ E DVVSWN+++ G A  G    AL    KM  +G RP  FT S +L   + 
Sbjct: 123 VRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAE 182

Query: 160 AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G ++HG   R+G   S+V +G+SLIDMY       Y+  VF N+   D I WNS
Sbjct: 183 CADVKRGLEVHGFAFRNGFD-SDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNS 241

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           L++GC  +G  E AL  F  M  +G  P   T S +I  C  L +L  GKQ+ A  +  G
Sbjct: 242 LLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGG 301

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F  N  + S+ ID++ KC  +  +  +F+++   D      MI  Y  +G    AL LF+
Sbjct: 302 FEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFE 361

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKT 394
            M   + +P   T   VL++      V+ G + F SM+   G        ++L +   + 
Sbjct: 362 RMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRA 421

Query: 395 GSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           G +D +     K+  +   S W+T++     +       +V ++++E  L P  I    V
Sbjct: 422 GELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME--LEPRSIGSHVV 479

Query: 454 L 454
           L
Sbjct: 480 L 480



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 181/419 (43%), Gaps = 58/419 (13%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG  F+ GF++  ++G+  +D+Y+    +D  +++FD +P ++ I WN           
Sbjct: 192 VHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWN----------- 240

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS- 155
                               S+++G A  G  + AL +F +M   GVRP   TFS L+  
Sbjct: 241 --------------------SLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPV 280

Query: 156 --TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              ++S   GKQ+H  +I  G    NV + +SLIDMY K G +  A  +F  M   D++S
Sbjct: 281 CGNLASLRFGKQLHAYVICGGFE-DNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVS 339

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALS 272
           W ++I G    G    AL  F  M      P+  T   V+ AC+    +DKG + F ++S
Sbjct: 340 WTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMS 399

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVA 331
              G +      +A  D   +   L+++     ++  +   +V + ++     +    +A
Sbjct: 400 NHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLA 459

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFH---SMAIKSGFDSNAVVASSLM 388
            E+ + ++  ++ P       VLS++           H   SM  K G   +   A S +
Sbjct: 460 EEVAKKIM--ELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMR-KKGMKKDP--ACSWI 514

Query: 389 EMYAKTGSIDSSTEIFVKLDK------RDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           E       + S   +FV  D+      R + + N     + + G    T DVF+++ EE
Sbjct: 515 E-------VKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEE 566



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 35/207 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI  C +  S  F K +H ++   GF  + ++ +  +D+Y + G          EI  
Sbjct: 275 SSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCG----------EISI 324

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +CI                     FD++  PDVVSW +MI GYA  G +  AL +F +M
Sbjct: 325 AHCI---------------------FDKMSSPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L   +P+  TF  +L+  S A     G +   SM      +  +    +L D  G+ G 
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGC 221
           L  A+     M+     S W++L+  C
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRAC 450


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 315/639 (49%), Gaps = 66/639 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S S  + ++  C +         +H H  K  F A   +    LD+Y++     D   LF
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 297

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           D                  KS+NL+               S+N+MI+GY+   +   AL 
Sbjct: 298 D------------------KSENLNRQ-------------SYNAMITGYSQEEHGFKALL 326

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSL 186
           +F ++   G+   GF   I LS V  AC        G QI+   I+S LSL +V + N+ 
Sbjct: 327 LFHRLMSSGL---GFD-EISLSGVFRACALVKGLSEGLQIYDLAIKSSLSL-DVCVANAA 381

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           IDMYGK   L  AF VF  M   D +SWN++I+    +G G   L  F SM  S   PDE
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL--- 303
           +T   V+ ACT   +L  G ++ +  VK G  SNS V  + ID++SKC  +E++ ++   
Sbjct: 442 FTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500

Query: 304 ----------FEQLDRWDYAVI-------NVMISTYGRYGFGEVALELFQLMLREDIRPT 346
                      E+L++     +       N +IS Y      E A  LF  M+   I P 
Sbjct: 501 FFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 560

Query: 347 EFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           +FT + VL +   +     G Q H+  IK    S+  ++S+L++MY+K G +  S  +F 
Sbjct: 561 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFE 620

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
           K  +RD V+WN ++ G   +G+  E + +FE ++ E + P+ +T  ++L AC + G +DK
Sbjct: 621 KSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDK 680

Query: 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525
           G+  F  MK +YG+ P   HY+ ++D+L ++G++ +A+++   MPF+    IW ++L   
Sbjct: 681 GLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVC 740

Query: 526 AIY-GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
            I+  +V++ E     ++ L       Y+LL+  YA  G WE +  +++ MR   + K  
Sbjct: 741 TIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEP 800

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           GCSW+ +K+ ++ F  G+  H   ++IY  L L+  EM+
Sbjct: 801 GCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 839



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 160/553 (28%), Positives = 276/553 (49%), Gaps = 27/553 (4%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  K  H H+   GF   T++ N  L +Y+          +FD +P ++ +SW
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  KS+N+  A   F+ +P  DVVSWNSM+SGY   G +  ++E+F  M   G  
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
             G TF+I+L   S +     G QIHG ++R G   ++VV  ++L+DMY K      +  
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCD-TDVVAASALLDMYAKGKRFVESLR 194

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  + E + +SW+++I+GC  +    LAL  F  M+       +   + V+ +C  L  
Sbjct: 195 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSE 254

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  G Q+ A ++K  F ++ IV +AT+D+++KC+ ++D+  LF++ +  +    N MI+ 
Sbjct: 255 LRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITG 314

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y +   G  AL LF  ++   +   E +LS V  +   +  +  G Q + +AIKS    +
Sbjct: 315 YSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLD 374

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             VA++ ++MY K  ++  +  +F ++ +RD VSWN I+    QNG+  ETL +F  +L 
Sbjct: 375 VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLR 434

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + PD  T  +VL AC  GG +  GM + S++ +  G+         +ID+  + G + 
Sbjct: 435 SRIEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIE 492

Query: 501 KA----------IDITSTMP---------FQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +A           +++ TM           Q  C  W SI+    +    +  + +  RM
Sbjct: 493 EAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552

Query: 542 MDLQL-PSPLPYS 553
           M++ + P    Y+
Sbjct: 553 MEMGITPDKFTYA 565



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 24/381 (6%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           +L+VF  IPE + VSW+++I+G         AL+ F +MQ      S   ++ +L + ++
Sbjct: 192 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 251

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G Q+H   ++S  +   +V   +L DMY K   +  A  +F   E L+  S+N+
Sbjct: 252 LSELRLGGQLHAHALKSDFAADGIVRTATL-DMYAKCDNMQDAQILFDKSENLNRQSYNA 310

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G     +G  AL  F+ +  SG   DE ++S V  AC  ++ L +G Q++ L++K  
Sbjct: 311 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSS 370

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              +  V +A ID++ KC  L ++ R+F+++ R D    N +I+ + + G G   L LF 
Sbjct: 371 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 430

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            MLR  I P EFT   VL +     + +G + HS  +KSG  SN+ V  SL++MY+K G 
Sbjct: 431 SMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGM 490

Query: 397 IDSSTEIFVKLDKRD--------------------LVSWNTIMMGLTQNGRAAETLDVFE 436
           I+ + +I  +  +R                      VSWN+I+ G     ++ +   +F 
Sbjct: 491 IEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 550

Query: 437 ELLEEGLPPDRITLAAVLLAC 457
            ++E G+ PD+ T A VL  C
Sbjct: 551 RMMEMGITPDKFTYATVLDTC 571


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 288/547 (52%), Gaps = 14/547 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTF 150
           +K   LD A +VF  + + +VVSW +++ G+   G +   L +  +M+      P+ +T 
Sbjct: 3   VKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTL 62

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           S  L     V     G  IHG  +R+G    +VV  +SL+ +Y K G +  A  VF    
Sbjct: 63  SASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVV-ASSLVLVYSKGGRIGDARRVFDGAG 121

Query: 208 -ELDIISWNSLISGCFNSGYGELALDQFYSMR-YSG-YSPDEYTISIVINACTKLRNLDK 264
               I +WN+++SG  ++G+G  AL  F  MR + G + PDE+T + ++ AC+ L    +
Sbjct: 122 LGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATRE 181

Query: 265 GKQVFALSVKVGF--LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           G QV A     GF   SN+I+  A +D++ KC RL  ++++FE+L+R +      ++  +
Sbjct: 182 GAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGH 241

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G    ALELF+   R   RP    LS V+  +     VE G Q H   IK    ++ 
Sbjct: 242 AQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDV 301

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
              +S+++MY K G  D +  +F ++   ++VSW T++ GL ++G   E + +FEE+   
Sbjct: 302 SAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAG 361

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ PD +T  A+L AC++ G VD+    FS ++ +  V P  EHYAC++DLL +AG+L +
Sbjct: 362 GVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELRE 421

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A D+  TMP +P   +W+++L A  ++ DV +     + ++ +   +P+ Y  L+   A 
Sbjct: 422 ARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAE 481

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG---ELQHHGGQKIYLVLRLL 618
            G W    +V+  MR+ G+ K  GCSW+ +   ++ F  G   E  H     I  VLR +
Sbjct: 482 AGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDM 541

Query: 619 TWEMEDE 625
              M ++
Sbjct: 542 ETRMREQ 548



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 150/326 (46%), Gaps = 36/326 (11%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IHG   + G+  H  + +  + +YS+ G   D  ++FD     + I+             
Sbjct: 81  IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIA------------- 127

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--GVRPSGFTFSILL 154
                            +WN+M+SGYA  G+   AL +F +M+      +P  FTF+ LL
Sbjct: 128 -----------------TWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLL 170

Query: 155 STVS---SACHGKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
              S   +   G Q+H +M  SG S  SN +L  +L+DMY K   L  A  VF  +E  +
Sbjct: 171 KACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKN 230

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +I W +++ G    G    AL+ F     SG  PD + +S V+        +++G+QV  
Sbjct: 231 VIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHC 290

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             +K    ++    ++ +D++ KC   +++ R+F ++   +      M++  G++G G  
Sbjct: 291 YGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGRE 350

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSS 356
           A+ LF+ M    + P E T   +LS+
Sbjct: 351 AVALFEEMRAGGVEPDEVTYLALLSA 376



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 37/257 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN--AHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + L+  C    +      +H  +   GF+  ++  L    +D+Y +       +Q+F+ +
Sbjct: 167 ASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERL 226

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            +KN I W                                +++ G+A  G    ALE+F 
Sbjct: 227 ERKNVIQW-------------------------------TAVVVGHAQEGQVTEALELFR 255

Query: 137 KMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +    G RP     S ++  ++       G+Q+H   I+     ++V  GNS++DMY K 
Sbjct: 256 RFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTG-TDVSAGNSIVDMYLKC 314

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G+   A  +F  M   +++SW ++++G    G G  A+  F  MR  G  PDE T   ++
Sbjct: 315 GLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALL 374

Query: 254 NACTKLRNLDKGKQVFA 270
           +AC+    +D+ ++ F+
Sbjct: 375 SACSHAGLVDECRRYFS 391



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 13/203 (6%)

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRI 448
           MY K G +D + E+F  +  R++VSW  +M+G  ++G A   L +  E+       P+  
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 449 TLAAVLLACNYGGFVDKGM----LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           TL+A L AC   G    G+    L   A  +E+ V+      + ++ +  + G++G A  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVA-----SSLVLVYSKGGRIGDARR 115

Query: 505 ITSTMPFQPGCSIWESILRASAIYG---DVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           +        G + W +++   A  G   D  L      R      P    ++ L +A + 
Sbjct: 116 VFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSG 175

Query: 562 RGRWEAIVRVKKVMRKNGINKVT 584
            G      +V   M  +G +  +
Sbjct: 176 LGATREGAQVHAAMTASGFSTAS 198



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 45/247 (18%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F   +  + +H +  K         GN  +D+Y + G  D+  ++F E+   N +SW   
Sbjct: 279 FALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTM 338

Query: 88  LRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QG 142
           + GL K      A+ +F+E+     EPD V++ +++S  +  G  D     FS ++  + 
Sbjct: 339 VNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRT 398

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           VRP    +         AC                        ++D+ G+ G L  A  +
Sbjct: 399 VRPKAEHY---------AC------------------------MVDLLGRAGELREARDL 425

Query: 203 FLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSPDEY-TISIVINACT 257
              M  E  +  W +L+S C    +   G  A D   +M   G +P  Y T+S V+    
Sbjct: 426 IRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAM--DGDNPVNYVTLSNVLAEAG 483

Query: 258 KLRNLDK 264
           + R   K
Sbjct: 484 EWRECHK 490


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 181/612 (29%), Positives = 306/612 (50%), Gaps = 39/612 (6%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            ++  C    SF   K +H    K   +   ++ N  LD+YS++G   D   LF  IP K+
Sbjct: 432  ILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKD 491

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             ISWN    GL  + NL+                              + A+ M  +M+L
Sbjct: 492  SISWNALTVGL--AQNLE-----------------------------EEEAVCMLKRMRL 520

Query: 141  QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             G+ P   +FS  +   S + +   GKQIH   I+ G+  SN  +G+SLID+Y K G + 
Sbjct: 521  HGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGI-CSNHAVGSSLIDLYSKHGDVE 579

Query: 198  YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
             +  +F  ++   I+  N+LI+G   +   + A+  F  +   G  P   T S +++ C+
Sbjct: 580  SSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639

Query: 258  KLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
               N   GKQV   ++K G L +  +L  ++  ++ K   LED+ +L  ++ D  +    
Sbjct: 640  GSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEW 699

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
              +IS Y + G+G+ +L  F  M   ++R  E T + VL +   +     G + H +  K
Sbjct: 700  TAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITK 759

Query: 375  SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLD 433
            SGF S     S+L++MY+K G + SS E F +L +K+D++ WN++++G  +NG A E L 
Sbjct: 760  SGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALL 819

Query: 434  VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            +F+++ E  + PD +T   VL+AC + G + +G   F  M++ YG+ P  +HYAC IDLL
Sbjct: 820  LFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLL 879

Query: 494  CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
             + G L +A +    +PF+P   +W + L A  ++ D +  +  A ++++L+      Y 
Sbjct: 880  GRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYV 939

Query: 554  LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
            LL+  +A  G W      ++ MR+ G+ K  GCSWI + N+   F   +  H    +IY 
Sbjct: 940  LLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYE 999

Query: 614  VLRLLTWEMEDE 625
            +L  LT  M+ +
Sbjct: 1000 MLGDLTGMMKKD 1011



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 234/478 (48%), Gaps = 42/478 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C       + + +H  + K GF++  +     +D+Y++ G   +  ++FD I   +
Sbjct: 164 VLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPD 223

Query: 81  CISWN-----------------------------------ICLRGLLKSDNLDTALKVFD 105
            I W+                                     +  L  S  LD A  +  
Sbjct: 224 TICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLK 283

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH 162
           ++P P  V+WN++ISG+A  G     L ++  M+  G+ P+  TF+ +LS  ++      
Sbjct: 284 KMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVE 343

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H + +  GL  +NV +G+SLI++Y K G    A  VF    E +I+ WN++++G  
Sbjct: 344 GQQMHAAAVMHGLD-ANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFV 402

Query: 223 NSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +   E A+  F Y MRY+    DE+T   ++ ACT L +   GKQV  +++K     + 
Sbjct: 403 QNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISL 461

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +AT+D++SK   + D+  LF  +   D    N +     +    E A+ + + M   
Sbjct: 462 FVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLH 521

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I P + + S  +++   I   E G Q H +AIK G  SN  V SSL+++Y+K G ++SS
Sbjct: 522 GITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS 581

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +IF ++D   +V  N ++ G  QN    E + +F+++L++GL P  +T +++L  C+
Sbjct: 582 RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/540 (25%), Positives = 254/540 (47%), Gaps = 51/540 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++    + K+F   + +H      G +A+ ++G+  ++LY++ G   D   +FD   +
Sbjct: 329 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE 388

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + WN  L G ++           +E+PE                     A+ MF  M
Sbjct: 389 KNIVMWNAMLTGFVQ-----------NELPEE--------------------AIRMFQYM 417

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               ++   FTF  +L     +SS   GKQ+H   I++ + +S + + N+ +DMY K G 
Sbjct: 418 MRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS-LFVANATLDMYSKYGA 476

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F  +   D ISWN+L  G   +   E A+     MR  G +PD+ + S  INA
Sbjct: 477 IGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINA 536

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ +R  + GKQ+  L++K G  SN  V S+ IDL+SK   +E S ++F Q+D      I
Sbjct: 537 CSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPI 596

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIK 374
           N +I+ + +    + A++LFQ +L++ ++P+  T S +LS          G Q H   +K
Sbjct: 597 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLK 656

Query: 375 SG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETL 432
           SG    + ++  SL  +Y K+  ++ + ++  ++ D ++L  W  I+ G  QNG    +L
Sbjct: 657 SGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSL 716

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG------EEHY 486
             F  +    +  D  T A+VL AC+        +  F+  KE +G++        E   
Sbjct: 717 VSFWRMRHCNVRSDEATFASVLKACS-------DVTAFADGKEIHGLITKSGFGSYETAT 769

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           + +ID+  + G +  + +    +  +     W S++   A  G       + ++M +LQ+
Sbjct: 770 SALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQI 829



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 37/303 (12%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           + +HG ++R G  L    LG+SL+++Y K G + YA+       E    + +SL+S    
Sbjct: 76  RALHGRILRGGSPLLGR-LGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHAR 134

Query: 224 SGYGELALDQFYSMR-YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           SG     L  F  +R  +G  PD++ +++V++AC+++  L  G+QV    VK GF S+  
Sbjct: 135 SGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVF 194

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
             +A +D+++KC  + ++ R+F+ +   D    + MI+ Y R G  + AL LF  M +  
Sbjct: 195 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P + TL  ++S++                                  A +G +D +T 
Sbjct: 255 SAPDQVTLVTIISTL----------------------------------ASSGRLDHATA 280

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL-LACNYGG 461
           +  K+     V+WN ++ G  Q+G     L +++++   GL P R T A++L  A N   
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 462 FVD 464
           FV+
Sbjct: 341 FVE 343



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           RP +F L+ VLS+   +  + +G Q H   +KSGF S+    ++L++MYAK G + ++  
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  +   D + W++++    + G   E L +F  + + G  PD++TL  ++      G 
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGR 274

Query: 463 VDKGMLVFSAM 473
           +D    +   M
Sbjct: 275 LDHATALLKKM 285



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 3   SYLKKAHVN-KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S+ +  H N ++  +  + ++  C    +F   K IHG + K GF ++    +  +D+YS
Sbjct: 718 SFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYS 777

Query: 62  RFGTSDDVLQLFDEIPQK-NCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWN 116
           + G      + F E+  K + + WN  + G  K+   D AL +F ++ E    PD V++ 
Sbjct: 778 KCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFL 837

Query: 117 SMISGYASCGYSDYALEMFSKM-QLQGVRP 145
            ++      G        F  M ++ G+ P
Sbjct: 838 GVLIACTHSGLISEGRHFFGPMRKVYGLTP 867


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 284/539 (52%), Gaps = 27/539 (5%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS--ACH-------GK 164
           SW   I   AS G   +A+ +F +M+     P+    S+L S   +  +C        G 
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASD--PAAACSSVLTSLPGALKSCAALGLRALGA 78

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLG--------------VLYYAFGVFLNMEELD 210
            +H   +RSG + ++    N+L+++Y KL               VL     VF  M E D
Sbjct: 79  SLHALALRSG-AFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKD 137

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SWN+L+ GC  SG    AL     M   G  PD +T+S V+    +  ++ +G ++  
Sbjct: 138 VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            + + GF  +  V S+ ID+++ C R + SV++F+ L   D  + N M++   + G  + 
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDE 257

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           AL LF+ ML   I+P   T S ++ +   +  +  G Q H+  I+ GFD N  ++SSL++
Sbjct: 258 ALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLID 317

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY K G++  +  IF ++   D+VSW  ++MG   +G A E L +F+ +    L P+ IT
Sbjct: 318 MYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHIT 377

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             AVL AC++ G VDKG   F++M + YG++P  EH+A + D L + G+L +A +  S M
Sbjct: 378 FLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGM 437

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
             +P  S+W ++LRA  ++ +  L E VA+++ DL+  S   + +L+  Y+  GRW    
Sbjct: 438 KIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAA 497

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            ++K MRK G+ K   CSWI +KN+ + F A +  H   ++I   L + + +M  +G V
Sbjct: 498 HLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYV 556



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 7/329 (2%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L++  KVFDE+PE DVVSWN+++ G A  G    AL +  +M   G +P  FT S +L  
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPI 182

Query: 157 VSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +       G ++HG   R+G    +V +G+SLIDMY       Y+  VF N+   D I 
Sbjct: 183 FAEGADVRRGMELHGFATRNGFH-DDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL 241

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+++GC  +G  + AL  F  M +SG  P   T S +I AC  L +L  GKQ+ A  +
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI 301

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + GF  N  + S+ ID++ KC  +  + R+F+++   D      MI  +  +G    AL 
Sbjct: 302 RGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALV 361

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMY 391
           LF  M   +++P   T   VL++      V+ G + F+SM+   G   +    ++L +  
Sbjct: 362 LFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTL 421

Query: 392 AKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
            + G ++ +      +  +   S W+T++
Sbjct: 422 GRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 36/268 (13%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG   + GF+   ++G+  +D+Y+    +D  +++FD +P ++ I WN  L G      
Sbjct: 195 LHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGC----- 249

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                                     A  G  D AL +F +M   G++P   TFS L+  
Sbjct: 250 --------------------------AQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPA 283

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              ++S   GKQ+H  +IR G    NV + +SLIDMY K G +  A  +F  ++  DI+S
Sbjct: 284 CGNLASLLLGKQLHAYVIRGGFD-GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVS 342

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALS 272
           W ++I G    G    AL  F  M      P+  T   V+ AC+    +DKG + F ++S
Sbjct: 343 WTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMS 402

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              G + +    +A  D   +  +LE++
Sbjct: 403 DHYGIVPSLEHHAALADTLGRPGKLEEA 430



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 35/207 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI  C +  S    K +H ++ + GF+ + ++ +  +D+Y + G              
Sbjct: 278 SSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCG-------------- 323

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            N+  A ++FD I  PD+VSW +MI G+A  G +  AL +F +M
Sbjct: 324 -----------------NVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L  ++P+  TF  +L+  S A     G +   SM      + ++    +L D  G+ G 
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGC 221
           L  A+     M+     S W++L+  C
Sbjct: 427 LEEAYNFISGMKIKPTASVWSTLLRAC 453


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 301/597 (50%), Gaps = 50/597 (8%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG L KLGF + T LGN  +D+Y++ G                                
Sbjct: 239 LHGALTKLGFGSDTMLGNNLIDMYAKCG-------------------------------E 267

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLS 155
           LD A +VF  + + +VVSW +++ G+   G +   L +  +M+      P+ +T S  L 
Sbjct: 268 LDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLK 327

Query: 156 T---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD-- 210
                     G  IHG  +R+G    + V+ +SL+ +Y K G +  A  VF +   L   
Sbjct: 328 ACCVTEDMGAGVGIHGLCVRTGYE-EHYVVASSLVLLYSKGGRIGDARRVF-DCAGLGRG 385

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM------RYSGYSPDEYTISIVINACTKLRNLDK 264
           + +WN++ISG  ++G+G  AL  F  M          + PDE+T + ++ AC  L    +
Sbjct: 386 LATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPRE 445

Query: 265 GKQVFALSVKVGF--LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           G QV A     GF   SN+I+  A +D++ KC RL  ++++FE+L+R +      ++  +
Sbjct: 446 GAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGH 505

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            + G    ALELF+   R   R     LS ++  +     VE G Q H   +KS   ++ 
Sbjct: 506 AQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDV 565

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
              +S+++MY K G  D +  +F ++  R++VSW T++ GL ++G   E + +FEE+   
Sbjct: 566 SAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAG 625

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G+ PD +T  A+L AC++ G VD+    FS ++ +  V P  EHYAC++DLL +AG+L +
Sbjct: 626 GVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELRE 685

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A D+  TMP +P   +W+++L A  ++ DV +     + ++ +   +P+ Y  L+  +A 
Sbjct: 686 ARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAE 745

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG--ELQHHGGQKIYLVLR 616
            G W    +V+  MR+ G+ K  GCSW+ I   ++ F  G  E  H     I  VLR
Sbjct: 746 AGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQAGDIRRVLR 802



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 168/319 (52%), Gaps = 14/319 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G Q+HG++ + G   S+ +LGN+LIDMY K G L  A  VF  M + +++SW +L+ G  
Sbjct: 236 GVQLHGALTKLGFG-SDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFL 294

Query: 223 NSGYGELALDQFYSMR-YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             G     L     MR  S  +P+EYT+S  + AC    ++  G  +  L V+ G+  + 
Sbjct: 295 QHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHY 354

Query: 282 IVLSATIDLFSKCNRLEDSVRLFE--QLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           +V S+ + L+SK  R+ D+ R+F+   L R   A  N MIS Y   G G  AL +F+ M 
Sbjct: 355 VVASSLVLLYSKGGRIGDARRVFDCAGLGR-GLATWNAMISGYAHAGHGRDALLVFREMR 413

Query: 340 ------REDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFD--SNAVVASSLMEM 390
                  +  +P EFT + +L +   +     G+Q H+    SGF   SNA++A +L++M
Sbjct: 414 RRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDM 473

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G +  + ++F +L++++ + W T+++G  Q G+  E L++F      G   D   L
Sbjct: 474 YVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVL 533

Query: 451 AAVLLACNYGGFVDKGMLV 469
           ++++        V++G  V
Sbjct: 534 SSIVGVLADFALVEQGRQV 552



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 11/293 (3%)

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           I+ ++ A  K  +L  G Q+     K+GF S++++ +  ID+++KC  L+ +  +F  + 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 309 RWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS 366
             +      ++  + ++G     L L  ++    +  P E+TLS  L +  +   +  G 
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
             H + +++G++ + VVASSL+ +Y+K G I  +  +F      R L +WN ++ G    
Sbjct: 340 GIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHA 399

Query: 426 GRAAETLDVFEELL------EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE-YG 478
           G   + L VF E+       E+   PD  T A++L AC   G   +G  V +AM    + 
Sbjct: 400 GHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFS 459

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
                     ++D+  + G+L  A+ +   +  +     W +++   A  G V
Sbjct: 460 TASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQ-WTTVVVGHAQEGQV 511



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           +A     S ++     F   +  + +H +  K         GN  +D+Y + G  D+  +
Sbjct: 527 RADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAER 586

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGY 127
           +F EIP +N +SW   + GL K      A+ +F+E+     EPD V++ +++S  +  G 
Sbjct: 587 MFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGL 646

Query: 128 SDYALEMFSKMQL-QGVRPSGFTFSILLSTVSSA 160
            D     FS ++  + VRP    ++ ++  +  A
Sbjct: 647 VDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRA 680


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 162/514 (31%), Positives = 292/514 (56%), Gaps = 10/514 (1%)

Query: 133 EMFSKMQLQG--VRPSGFTFSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           E   +M +QG  V   G+  S+L   +S      G+++H  MI++      V L   LI 
Sbjct: 463 EALLEMGIQGLEVEFQGYD-SVLTECISQTAIREGQRVHAHMIKTCYE-PPVYLRTRLIV 520

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           +Y K   L  A  V   M E +++SW ++ISG    GY   AL  F  M  SG +P+E+T
Sbjct: 521 LYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFT 580

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            + V+ +CT       G+Q+ +L +K  F S+  V S+ +D+++K  ++ ++ R+F+ L 
Sbjct: 581 FATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 640

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
             D      +IS Y + G  E AL+LF+ + RE +R    T + VL+++  +  ++HG Q
Sbjct: 641 ERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQ 700

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS  +++      V+ +SL++MY+K GS+  S  IF  + +R ++SWN +++G +++G 
Sbjct: 701 VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGL 760

Query: 428 AAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEH 485
             E +++F+ + EE  + PD +T  AVL  C++GG  D+G+ +F  M  ++ G  P  EH
Sbjct: 761 GREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEH 820

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y C++DL  +AG++ +A +    MPF+P  +IW S+L A  ++ +V + E VA R+++++
Sbjct: 821 YGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIE 880

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             +   Y +L+  YA  GRW+ +  V+++M++  + K  G SWI +   ++TF+A +  H
Sbjct: 881 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSH 940

Query: 606 HGGQKIYLVLRLLTWEMEDEGCV-YLECDKLDVE 638
              ++++  +R L+ ++++ G V  L C   DV+
Sbjct: 941 PRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVD 974



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 195/399 (48%), Gaps = 49/399 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C+S  +    + +H H+ K  +    YL  R + LY+                   
Sbjct: 483 VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYN------------------- 523

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K   L  A +V DE+PE +VVSW +MISGY+  GY+  AL +F +M +
Sbjct: 524 ------------KCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM 571

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+ FTF+ +L++ +S+     G+QIH  +I++    S++ +G+SL+DMY K G + 
Sbjct: 572 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFE-SHIFVGSSLLDMYAKAGKIC 630

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + E D++S  ++ISG    G  E ALD F  ++  G   +  T + V+ A +
Sbjct: 631 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS 690

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  LD G+QV +  ++       ++ ++ ID++SKC  L  S R+F+ +        N 
Sbjct: 691 GLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNA 750

Query: 318 MISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQ-------FH 369
           M+  Y ++G G  A+ELF+LM  E+ ++P   T   VLS        HG         F+
Sbjct: 751 MLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSG-----CSHGGMEDRGLEIFY 805

Query: 370 SMA-IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
            M   K GF+        +++++ + G ++ + E   K+
Sbjct: 806 EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 844


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/543 (30%), Positives = 282/543 (51%), Gaps = 13/543 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A +VFD   E D VSWNS++SGY   G  +  + +F+ M+  G+  + F    
Sbjct: 156 KCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGS 215

Query: 153 LLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           ++   S    G     + +HG +I++GL  S+V L +++IDMY K G L  A  +F +++
Sbjct: 216 VIKCCSGRGDGTMDIAEAVHGCVIKAGLD-SDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 208 ELDIISWNSLISG------CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           E +++ +N++I+G               AL  +  ++  G  P E+T S V+ AC     
Sbjct: 275 EPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGY 334

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ GKQ+    +K  F  +  + SA IDL+     +ED  R F    + D      M+S 
Sbjct: 335 LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
             +    E AL LF   L   ++P  FT+S V+++   +     G Q    A KSGFD  
Sbjct: 395 CVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRF 454

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            V+ +S + MYA++G +D++T  F +++  D+VSW+ ++    Q+G A + L  F+E+++
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + P+ IT   VL AC++GG VD+G+  +  M ++YG+ P  +H  C++DLL +AG+L 
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLA 574

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
            A    S   F     IW S+L +  I+ D++  + VA R+M+L+  S   Y +L   Y 
Sbjct: 575 DAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYL 634

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             G      + + +M++ G+ K  G SWI +K  +++F AG+  H     IY  L  +  
Sbjct: 635 DAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLS 694

Query: 621 EME 623
            +E
Sbjct: 695 RIE 697



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 187/370 (50%), Gaps = 13/370 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A ++ DE+P  + VS+N +I  Y+  G +  +LE  ++ +  GV    F+++  L+  S 
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           A H   G+ +H   I  GLS S V + NSL+ MY K G +  A  VF   EE D +SWNS
Sbjct: 122 AGHLRAGRAVHALAILDGLS-SGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNS 180

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN--LDKGKQVFALSVK 274
           L+SG   +G  E  +  F  MR  G   + + +  VI  C+   +  +D  + V    +K
Sbjct: 181 LVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIK 240

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY------GFG 328
            G  S+  ++SA ID+++K   L ++  LF  +   +  + N MI+ + R          
Sbjct: 241 AGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVA 300

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSL 387
             AL L+  +    ++PTEFT S VL +  +   +E G Q H   IK  F  +  + S+L
Sbjct: 301 SEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSAL 360

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y  +G ++     F    K D+V+W  ++ G  QN    + L +F E L  GL PD 
Sbjct: 361 IDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDL 420

Query: 448 ITLAAVLLAC 457
            T+++V+ AC
Sbjct: 421 FTISSVMNAC 430



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 169/330 (51%), Gaps = 29/330 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D A+ +HG + K G ++  +L +  +D+Y++ G   +   LF  + + N + +N  + 
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIA 286

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G  +++ +     +  E+                    +  AL ++S++Q +G++P+ FT
Sbjct: 287 GFCRTETV-----IGKEV--------------------ASEALTLYSEVQSRGMQPTEFT 321

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +L   + A +   GKQIHG +I+      + + G++LID+Y   G +   F  F + 
Sbjct: 322 FSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFI-GSALIDLYFNSGCMEDGFRCFRSS 380

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + DI++W +++SGC  +   E AL  F+    +G  PD +TIS V+NAC  L     G+
Sbjct: 381 PKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGE 440

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+   + K GF   +++ ++ + ++++   ++ + R F++++  D    + +IS + ++G
Sbjct: 441 QIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSS 356
               AL  F  M+   + P E T   VL++
Sbjct: 501 CARDALHFFDEMVDAKVVPNEITFLGVLTA 530



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 152/298 (51%), Gaps = 9/298 (3%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           +++ L N+L+  Y +LG    A  +   M   + +S+N LI      G   L+L+     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R +G   D ++ +  + AC++  +L  G+ V AL++  G  S   V ++ + ++SKC  +
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL--- 354
            ++ R+F+  +  D    N ++S Y R G  E  + +F +M R  +    F L  V+   
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           S      ++     H   IK+G DS+  + S++++MYAK G++  +  +F  + + ++V 
Sbjct: 221 SGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVM 280

Query: 415 WNTIMMGLTQN----GR--AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +NT++ G  +     G+  A+E L ++ E+   G+ P   T ++VL ACN  G+++ G
Sbjct: 281 FNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 36/274 (13%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            +F K IHG + K  F    ++G+  +DLY   G  +D  + F   P+ + ++W      
Sbjct: 335 LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTW------ 388

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                     +M+SG       + AL +F +    G++P  FT 
Sbjct: 389 -------------------------TAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTI 423

Query: 151 SILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           S +++  +S   A  G+QI     +SG      V+GNS + MY + G +  A   F  ME
Sbjct: 424 SSVMNACASLAVARAGEQIQCFATKSGFD-RFTVMGNSCVHMYARSGDVDAATRRFQEME 482

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D++SW+++IS     G    AL  F  M  +   P+E T   V+ AC+    +D+G +
Sbjct: 483 SHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLR 542

Query: 268 VFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDS 300
            +    K   LS +I   +  +DL  +  RL D+
Sbjct: 543 YYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADA 576



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 51/222 (22%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S +++ C S       + I     K GF+  T +GN C+ +Y+R G  D   +
Sbjct: 417 KPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATR 476

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+   + +SW                               +++IS +A  G +  A
Sbjct: 477 RFQEMESHDVVSW-------------------------------SAVISCHAQHGCARDA 505

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGL----------SLSNVV 181
           L  F +M    V P+  TF  +L+  S        HG ++  GL           LS  +
Sbjct: 506 LHFFDEMVDAKVVPNEITFLGVLTACS--------HGGLVDEGLRYYETMNKDYGLSPTI 557

Query: 182 LG-NSLIDMYGKLGVLYYAFGVFLN-MEELDIISWNSLISGC 221
                ++D+ G+ G L  A     N +   D + W SL++ C
Sbjct: 558 KHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASC 599


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 273/487 (56%), Gaps = 5/487 (1%)

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           S + F+ +LS++++  +   G+QIHG  +++GL L  V L N+L+ MY K   L  A  +
Sbjct: 209 SDYVFTAVLSSLAATVYVGLGRQIHGITVKNGL-LGFVALSNALVTMYSKCESLNEACKM 267

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F +  + + I+W+++++G   +G    A+  F  M  +G  P EYTI  V+NAC+ +  L
Sbjct: 268 FDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYL 327

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            +GKQ+ +  +K+GF  +    +A +D+++K   L D+ + F+ L   D A+   +IS Y
Sbjct: 328 VEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGY 387

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNA 381
            +    E AL L++ M    I P + T++ VL +   +  +E G Q H   IK GF    
Sbjct: 388 VQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEV 447

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            + S+L  MY K GS++    +F +   +D+VSWN ++ GL+ NG+  E L++FEE+L E
Sbjct: 448 PIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAE 507

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G  PD +T   ++ AC++ GFV++G   F  M +++G+ P  +HYAC++D+L +AGQL +
Sbjct: 508 GTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKE 567

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
             +   +     G  +W  +L A   +G+ +L     E++M L       Y  L   Y  
Sbjct: 568 TKEFIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTA 627

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
            GR   + RV K+MR NG++K  GCSWI +KN+ + F  G+  H   ++   ++ L++ +
Sbjct: 628 LGRMRDVERVWKLMRTNGVSKEVGCSWIALKNQWHVFVVGDTMHPRIEETKDLVSLVSRQ 687

Query: 622 MEDEGCV 628
           M +EG V
Sbjct: 688 MLEEGFV 694



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 197/417 (47%), Gaps = 40/417 (9%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             + IHG   K G      L N  + +YS+  + ++  ++FD    +N I+W+       
Sbjct: 228 LGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWS------- 280

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                                   +M++GY+  G S  A+++FS+M   G++PS +T   
Sbjct: 281 ------------------------AMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVG 316

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L+  S  C+   GKQ+H  +++ G    ++    +L+DMY K G L  A   F  ++E 
Sbjct: 317 VLNACSDICYLVEGKQLHSFLLKLGFE-RHLFATTALVDMYAKAGCLADARKGFDCLQER 375

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+  W SLISG   +   E AL  +  M+ +G  P++ T++ V+ AC+ L  L+ GKQV 
Sbjct: 376 DVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 435

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             ++K GF     + SA   +++KC  LED   +F +    D    N MIS     G G+
Sbjct: 436 GHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 495

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAVVASSL 387
            ALELF+ ML E   P + T   ++S+      VE G S FH M+ + G D      + +
Sbjct: 496 EALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACM 555

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRD--LVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           +++ ++ G +  + E F++    D  L  W  ++     +G     +   E+L+  G
Sbjct: 556 VDVLSRAGQLKETKE-FIESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLG 611



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 194/383 (50%), Gaps = 23/383 (6%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG---YSDYALEMFSKMQLQ 141
           N+ +    K   L  A  +F+ I   DVVSWNS+I+GY+  G    S   +++F +M+ Q
Sbjct: 55  NVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQ 114

Query: 142 GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV--L 196
            + P+ +T + +    S++ S   G+Q H  +++   S  ++ +  SL+ MY K G+  L
Sbjct: 115 DILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMS-SFGDIYVDTSLVGMYCKAGLKYL 173

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
           Y  +  F    + D++      S CF        L++         S  +Y  + V+++ 
Sbjct: 174 YMVYYGFWLCYKKDVLRRQLKSSICF--------LEE-----KEKESDSDYVFTAVLSSL 220

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                +  G+Q+  ++VK G L    + +A + ++SKC  L ++ ++F+     +    +
Sbjct: 221 AATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWS 280

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            M++ Y + G    A++LF  M    I+P+E+T+  VL++   I  +  G Q HS  +K 
Sbjct: 281 AMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKL 340

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           GF+ +    ++L++MYAK G +  + + F  L +RD+  W +++ G  QN    E L ++
Sbjct: 341 GFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILY 400

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
             +   G+ P+  T+A+VL AC+
Sbjct: 401 RRMKTAGIIPNDPTMASVLKACS 423



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 9/173 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +  K +HGH  K GF     +G+    +Y++ G+ +D   +F   P 
Sbjct: 416 ASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPN 475

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           K+ +SWN  + GL  +   D AL++F+E+     EPD V++ ++IS  +  G+ +     
Sbjct: 476 KDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSY 535

Query: 135 FSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVL 182
           F  M  Q G+ P    ++ ++  +S A   K+    I  + I  GL L  ++L
Sbjct: 536 FHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWRILL 588



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H+  I++G  +    A+ L+  YAK G +  +  IF  +  +D+VSWN+++ G +Q
Sbjct: 35  GRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQ 94

Query: 425 NGRAAET---LDVFEELLEEGLPPDRITLAAVLLA 456
           NG  + +   + +F E+  + + P+  TLA +  A
Sbjct: 95  NGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKA 129



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++ RNL  G+ V A  ++ G  + +   +  ++ ++KC +L  +  +F  +   D    N
Sbjct: 27  SQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWN 86

Query: 317 VMISTYGRYG---FGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMA 372
            +I+ Y + G        ++LF+ M  +DI P  +TL+ +  +   +     G Q H++ 
Sbjct: 87  SLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALV 146

Query: 373 IKSGFDSNAVVASSLMEMYAKTG 395
           +K     +  V +SL+ MY K G
Sbjct: 147 VKMSSFGDIYVDTSLVGMYCKAG 169


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/540 (29%), Positives = 301/540 (55%), Gaps = 8/540 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTF 150
           +K   +  AL++F+E+ +PD+V+W+SM+SG+   G    A+E F +M     V P   T 
Sbjct: 88  VKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTL 147

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             L+S    +S++  G+ +HG ++R G S +++ L NSL++ Y K      A  +F  M 
Sbjct: 148 ITLVSACTKLSNSRLGRCVHGFVMRRGFS-NDLSLVNSLLNCYAKSRAFKEAVNLFKMMA 206

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E D+ISW+++I+    +G    AL  F  M   G  P+  T+  V+ AC    +L++G++
Sbjct: 207 EKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRK 266

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
              L+++ G  +   V +A +D++ KC   E++  +F ++ + D      +IS +   G 
Sbjct: 267 THELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGM 326

Query: 328 GEVALELFQLMLRED-IRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
              ++E F +ML E+  RP    +  VL S   +  ++    FHS  IK GFDSN  + +
Sbjct: 327 AHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGA 386

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LP 444
           SL+E+Y++ GS+ +++++F ++  +D V W +++ G   +G+  + L+ F  ++    + 
Sbjct: 387 SLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVK 446

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T  ++L AC++ G + +G+ +F  M  +Y + P  EHYA ++DLL + G+L  AI+
Sbjct: 447 PNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIE 506

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           IT  MPF P   I  ++L A  I+ + ++ E VA+++ +L+      Y L++  Y ++G 
Sbjct: 507 ITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYYMLMSNMYGVKGE 566

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           WE + +++  +++ GI K    S I I+ +++ F A +  H   + +Y +L+ L   M++
Sbjct: 567 WENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFVADDDLHPEKEPVYGLLKELDLHMKE 626



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 220/421 (52%), Gaps = 8/421 (1%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMI 171
           WN+++   +   + +  +  FS+M     +P  FT  + L     +    +G+ IHG + 
Sbjct: 9   WNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFLK 68

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
           ++    S++ +G+SLI MY K G +  A  +F  +E+ DI++W+S++SG   +G    A+
Sbjct: 69  KNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAV 128

Query: 232 DQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
           + F  M   S  +PD  T+  +++ACTKL N   G+ V    ++ GF ++  ++++ ++ 
Sbjct: 129 EFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNC 188

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           ++K    +++V LF+ +   D    + +I+ Y + G    AL +F  M+ +   P   T+
Sbjct: 189 YAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATV 248

Query: 351 SCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            CVL +      +E G + H +AI+ G ++   V+++L++MY K  S + +  +F ++ K
Sbjct: 249 LCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPK 308

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFE-ELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +D+VSW  ++ G T NG A  +++ F   LLE    PD I +  VL +C+  GF+ K   
Sbjct: 309 KDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFL-KQAE 367

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F +   +YG        A +++L  + G LG A  + + +  +    +W S++    I+
Sbjct: 368 CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTV-VWTSLITGYGIH 426

Query: 529 G 529
           G
Sbjct: 427 G 427



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 195/422 (46%), Gaps = 42/422 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    + +HG + + GF+    L N  L+ Y+                   
Sbjct: 150 LVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYA------------------- 190

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       KS     A+ +F  + E DV+SW+++I+ Y   G +  AL +F++M  
Sbjct: 191 ------------KSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMID 238

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+  T   +L   ++A     G++ H   IR GL  + V +  +L+DMY K     
Sbjct: 239 DGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLE-TEVKVSTALVDMYMKCFSPE 297

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVINAC 256
            A+ VF  + + D++SW +LISG   +G    ++++F  M     + PD   +  V+ +C
Sbjct: 298 EAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSC 357

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++L  L + +   +  +K GF SN  + ++ ++L+S+C  L ++ ++F ++   D  V  
Sbjct: 358 SELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWT 417

Query: 317 VMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAI 373
            +I+ YG +G G  ALE F  M+R  +++P E T   +LS+     + H     F  M  
Sbjct: 418 SLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVN 477

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG---LTQNGRAAE 430
                 N    + L+++  + G +D++ EI  ++           ++G   + QNG  AE
Sbjct: 478 DYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAE 537

Query: 431 TL 432
           T+
Sbjct: 538 TV 539



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 137/264 (51%), Gaps = 3/264 (1%)

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M +  +  WN+L+       + E  +  F  M      PD +T+ + + AC +LR +  G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 266 KQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           + +   L   V   S+  V S+ I ++ KC R+ +++R+F +L++ D    + M+S + +
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 325 YGFGEVALELFQLMLR-EDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAV 382
            G    A+E F+ M    D+ P   TL  ++S+   +     G   H   ++ GF ++  
Sbjct: 121 NGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLS 180

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + +SL+  YAK+ +   +  +F  + ++D++SW+T++    QNG AAE L VF E++++G
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDG 240

Query: 443 LPPDRITLAAVLLACNYGGFVDKG 466
             P+  T+  VL AC     +++G
Sbjct: 241 TEPNVATVLCVLQACAAANDLEQG 264



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 41/194 (21%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C        A+  H ++ K GF+++ ++G   ++LYSR G+  +  ++F+EI   
Sbjct: 352 KVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEI--- 408

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM- 138
                               ALK        D V W S+I+GY   G    ALE F+ M 
Sbjct: 409 --------------------ALK--------DTVVWTSLITGYGIHGKGTKALETFNHMV 440

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS------LIDMYGK 192
           +   V+P+  TF   LS +S+  H   IH  +    L +++  L  +      L+D+ G+
Sbjct: 441 RSSEVKPNEVTF---LSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGR 497

Query: 193 LGVLYYAFGVFLNM 206
           +G L  A  +   M
Sbjct: 498 VGELDTAIEITKRM 511



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 5/152 (3%)

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + KR L  WNT++  L+++    + +  F ++  +   PD  TL   L AC     V  G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 467 MLVFSAMKEEYGVMPGEEHY--ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
            ++   +K+   V  G + Y  + +I +  + G++ +A+ + + +  +P    W S++  
Sbjct: 61  EMIHGFLKK--NVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELE-KPDIVTWSSMVSG 117

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
               G          RM      +P   +L+T
Sbjct: 118 FEKNGSPYQAVEFFRRMATASDVTPDRVTLIT 149


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 156/494 (31%), Positives = 283/494 (57%), Gaps = 7/494 (1%)

Query: 151 SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           S+L   +S      G+++H  MI++      V L   LI +Y K   L  A  V   M E
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYE-PPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 73

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW ++ISG    GY   AL  F  M  SG +P+E+T + V+ +CT       G+Q+
Sbjct: 74  RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            +L +K  F S+  V S+ +D+++K  ++ ++ R+F+ L   D      +IS Y + G  
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 193

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E AL+LF+ + RE +R    T + VL+++  +  ++HG Q HS  +++      V+ +SL
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 253

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPD 446
           ++MY+K GS+  S  IF  + +R ++SWN +++G +++G   E +++F+ + EE  + PD
Sbjct: 254 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 313

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
            +T  AVL  C++GG  D+G+ +F  M  ++ G  P  EHY C++DL  +AG++ +A + 
Sbjct: 314 SVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEF 373

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MPF+P  +IW S+L A  ++ +V + E VA R+++++  +   Y +L+  YA  GRW
Sbjct: 374 IKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRW 433

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           + +  V+++M++  + K  G SWI +   ++TF+A +  H   ++++  +R L+ ++++ 
Sbjct: 434 DDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEA 493

Query: 626 GCV-YLECDKLDVE 638
           G V  L C   DV+
Sbjct: 494 GYVPELSCVLYDVD 507



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 195/399 (48%), Gaps = 49/399 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C+S  +    + +H H+ K  +    YL  R + LY+                   
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYN------------------- 56

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                       K   L  A +V DE+PE +VVSW +MISGY+  GY+  AL +F +M +
Sbjct: 57  ------------KCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLM 104

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P+ FTF+ +L++ +S+     G+QIH  +I++    S++ +G+SL+DMY K G + 
Sbjct: 105 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFE-SHIFVGSSLLDMYAKAGKIC 163

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + E D++S  ++ISG    G  E ALD F  ++  G   +  T + V+ A +
Sbjct: 164 EARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS 223

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  LD G+QV +  ++       ++ ++ ID++SKC  L  S R+F+ +        N 
Sbjct: 224 GLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNA 283

Query: 318 MISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQ-------FH 369
           M+  Y ++G G  A+ELF+LM  E+ ++P   T   VLS        HG         F+
Sbjct: 284 MLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSG-----CSHGGMEDRGLEIFY 338

Query: 370 SMA-IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
            M   K GF+        +++++ + G ++ + E   K+
Sbjct: 339 EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 377


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 168/543 (30%), Positives = 282/543 (51%), Gaps = 13/543 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +  A +VFD   E D VSWNS++SGY   G  +  + +F+ M+  G+  + F    
Sbjct: 156 KCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGS 215

Query: 153 LLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           ++   S    G     + +HG +I++GL  S+V L +++IDMY K G L  A  +F +++
Sbjct: 216 VIKCCSGRGDGTMDIAEAVHGCVIKAGLD-SDVFLVSAMIDMYAKKGALVEAAALFRSVQ 274

Query: 208 ELDIISWNSLISG------CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           E +++ +N++I+G               AL  +  ++  G  P E+T S V+ AC     
Sbjct: 275 EPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGY 334

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L+ GKQ+    +K  F  +  + SA IDL+     +ED  R F    + D      M+S 
Sbjct: 335 LEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSG 394

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
             +    E AL LF   L   ++P  FT+S V+++   +     G Q    A KSGFD  
Sbjct: 395 CVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRF 454

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            V+ +S + MYA++G +D++T  F +++  D+VSW+ ++    Q+G A + L  F+E+++
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
             + P+ IT   VL AC++GG VD+G+  +  M ++YG+ P  +H  C++DLL +AG+L 
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLA 574

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
            A    S   F     IW S+L +  I+ D++  + VA R+M+L+  S   Y +L   Y 
Sbjct: 575 DAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYL 634

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             G      + + +M++ G+ K  G SWI +K  +++F AG+  H     IY  L  +  
Sbjct: 635 DAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEMLS 694

Query: 621 EME 623
            +E
Sbjct: 695 RIE 697



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 187/370 (50%), Gaps = 13/370 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A ++ DE+P  + VS+N +I  Y+  G +  +LE  ++ +  GV    F+++  L+  S 
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           A H   G+ +H   I  GLS S V + NSL+ MY K G +  A  VF   EE D +SWNS
Sbjct: 122 AGHLRAGRAVHALAILDGLS-SGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNS 180

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN--LDKGKQVFALSVK 274
           L+SG   +G  E  +  F  MR  G   + + +  VI  C+   +  +D  + V    +K
Sbjct: 181 LVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIK 240

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY------GFG 328
            G  S+  ++SA ID+++K   L ++  LF  +   +  + N MI+ + R          
Sbjct: 241 AGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVA 300

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSL 387
             AL L+  +    ++PTEFT S VL +  +   +E G Q H   IK  F  +  + S+L
Sbjct: 301 SEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSAL 360

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y  +G ++     F    K D+V+W  ++ G  QN    + L +F E L  GL PD 
Sbjct: 361 IDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDL 420

Query: 448 ITLAAVLLAC 457
            T+++V+ AC
Sbjct: 421 FTISSVMNAC 430



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 195/396 (49%), Gaps = 32/396 (8%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D A+ +HG + K G ++  +L +  +D+Y++ G   +   LF  + + N + +N  + 
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIA 286

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G  +++ +     +  E+                    +  AL ++S++Q +G++P+ FT
Sbjct: 287 GFCRTETV-----IGKEV--------------------ASEALTLYSEVQSRGMQPTEFT 321

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           FS +L   + A +   GKQIHG +I+      + + G++LID+Y   G +   F  F + 
Sbjct: 322 FSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFI-GSALIDLYFNSGCMEDGFRCFRSS 380

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + DI++W +++SGC  +   E AL  F+    +G  PD +TIS V+NAC  L     G+
Sbjct: 381 PKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGE 440

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+   + K GF   +++ ++ + ++++   ++ + R F++++  D    + +IS + ++G
Sbjct: 441 QIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHG 500

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS-GFDSNAVVA 384
               AL  F  M+   + P E T   VL++      V+ G +++    K  G        
Sbjct: 501 CARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHC 560

Query: 385 SSLMEMYAKTGSI-DSSTEIFVKLDKRDLVSWNTIM 419
           + ++++  + G + D+   I   +   D V W +++
Sbjct: 561 TCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLL 596



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 152/298 (51%), Gaps = 9/298 (3%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           +++ L N+L+  Y +LG    A  +   M   + +S+N LI      G   L+L+     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R +G   D ++ +  + AC++  +L  G+ V AL++  G  S   V ++ + ++SKC  +
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL--- 354
            ++ R+F+  +  D    N ++S Y R G  E  + +F +M R  +    F L  V+   
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           S      ++     H   IK+G DS+  + S++++MYAK G++  +  +F  + + ++V 
Sbjct: 221 SGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVM 280

Query: 415 WNTIMMGLTQN----GR--AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +NT++ G  +     G+  A+E L ++ E+   G+ P   T ++VL ACN  G+++ G
Sbjct: 281 FNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 51/222 (22%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S +++ C S       + I     K GF+  T +GN C+ +Y+R G  D   +
Sbjct: 417 KPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATR 476

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            F E+   + +SW                               +++IS +A  G +  A
Sbjct: 477 RFQEMESHDVVSW-------------------------------SAVISCHAQHGCARDA 505

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN------- 184
           L  F +M    V P+  TF  +L+  S        HG ++  GL     +  +       
Sbjct: 506 LHFFDEMVDAKVVPNEITFLGVLTACS--------HGGLVDEGLRYYETMTKDYGLSPTI 557

Query: 185 ----SLIDMYGKLGVLYYAFGVFLN-MEELDIISWNSLISGC 221
                ++D+ G+ G L  A     N +   D + W SL++ C
Sbjct: 558 KHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASC 599


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/499 (31%), Positives = 270/499 (54%), Gaps = 35/499 (7%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK I    +   + L N+   N+++  Y K G+L  A  VF +M E D++SWN+++ G  
Sbjct: 96  GKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYA 155

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G    AL  +   R SG   +E++ + ++ AC K R L   +Q     +  GFLSN +
Sbjct: 156 QDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVV 215

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG------------------- 323
           +  + ID ++KC ++E + R F+++   D  +   +IS Y                    
Sbjct: 216 LSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKN 275

Query: 324 ------------RYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHS 370
                       R G G  AL+LF+ M+   ++P +FT S C+ +S  I  + HG + H 
Sbjct: 276 PVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHG 335

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF-VKLDKRDLVSWNTIMMGLTQNGRAA 429
             I++    NA+V SSL++MY+K+GS+++S  +F +  DK D V WNT++  L Q+G   
Sbjct: 336 YMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGH 395

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           + L + +++++  + P+R TL  +L AC++ G V++G+  F +M  ++G++P +EHYAC+
Sbjct: 396 KALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACL 455

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLL +AG   + +     MPF+P   IW +IL    I+G+ +L +  A+ ++ L   S 
Sbjct: 456 IDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESS 515

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI--YTFNAGELQHHG 607
            PY LL+  YA  G+WE + +++ VM+K  +NK    SWI I+ ++  +T + G   H  
Sbjct: 516 APYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHAR 575

Query: 608 GQKIYLVLRLLTWEMEDEG 626
            ++IY +L  L   +E+E 
Sbjct: 576 KEEIYFILHNLAAVIEEEA 594



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 214/443 (48%), Gaps = 46/443 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           + L+ +C   KS    K IH HL   GF   +T L N  + +Y + G   D  ++FD++ 
Sbjct: 50  ASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMH 109

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +N  SWN  + G +KS  L  A  VFD +PE DVVSWN+M+ GYA  G    AL  + +
Sbjct: 110 LRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKE 169

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDM----- 189
            +  G++ + F+F+ LL+    +      +Q HG ++ +G  LSNVVL  S+ID      
Sbjct: 170 FRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGF-LSNVVLSCSIIDAYAKCG 228

Query: 190 --------------------------YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
                                     Y KLG +  A  +F  M E + +SW +LI+G   
Sbjct: 229 QMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVR 288

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G G  ALD F  M   G  P+++T S  + A   + +L  GK++    ++     N+IV
Sbjct: 289 QGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIV 348

Query: 284 LSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           +S+ ID++SK   LE S R+F    D+ D    N MIS   ++G G  AL +   M++  
Sbjct: 349 ISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFR 408

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           ++P   TL  +L++      VE G + F SM ++ G   +    + L+++  + G     
Sbjct: 409 VQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCF--- 465

Query: 401 TEIFVKLDKR----DLVSWNTIM 419
            E+  K+++     D   WN I+
Sbjct: 466 KELMRKIEEMPFEPDKHIWNAIL 488



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 177/343 (51%), Gaps = 9/343 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+  +     +  HG +   GF ++  L    +D Y++ G  +   + FDE+  K+
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
              W   + G  K  +++ A K+F E+PE + VSW ++I+GY   G  + AL++F KM  
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIA 304

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV+P  FTFS  L   ++++S  HGK+IHG MIR+ +   N ++ +SLIDMY K G L 
Sbjct: 305 LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVR-PNAIVISSLIDMYSKSGSLE 363

Query: 198 YAFGVF-LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            +  VF +  ++ D + WN++IS     G G  AL     M      P+  T+ +++NAC
Sbjct: 364 ASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNAC 423

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAV 314
           +    +++G + F +++V+ G + +    +  IDL  +    ++ +R  E++    D  +
Sbjct: 424 SHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHI 483

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            N ++     +G  E+  +    +++ D  P       +LSSI
Sbjct: 484 WNAILGVCRIHGNEELGKKAADELIKLD--PESSAPYILLSSI 524


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 304/610 (49%), Gaps = 43/610 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      D    IHG   KLG +    + N  + +YS+ G  ++    F           
Sbjct: 258 CAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSF----------- 306

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                  +K++N              +VVSWN+MIS ++  G  + A  +  +MQ+QG  
Sbjct: 307 -------VKNNN-------------KNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEE 346

Query: 145 PSGFTFSILLSTVSSACHGK-------QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
                 +IL   V  AC  K       ++HG   R      +V L N+ I  Y K G L 
Sbjct: 347 MKANEVTIL--NVLPACLDKLQLRSLKELHGYSFRH--CFQHVELSNAFILAYAKCGALN 402

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + +  + SWN+LI G   +G    AL   + M YSG  PD +TIS ++ AC 
Sbjct: 403 SAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACA 462

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L++L  GK++    ++ G  ++  V ++ +  +  C +   +  LF+++   +    N 
Sbjct: 463 HLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNA 522

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS Y + G    +L LF+  L E I+  E  +  V  +   +  +  G + H   +K+ 
Sbjct: 523 MISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKAL 582

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +A V  S+++MYAK+G I  S ++F  L  +++ SWN I++    +G   E ++++E
Sbjct: 583 QTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYE 642

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            + + G  PDR T   +L+AC + G V++G+  F  M+    + P  EHYAC+ID+L +A
Sbjct: 643 RMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARA 702

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L  A+ + + MP +    IW S+LR+   +G +++ E VA+++++L+      Y LL+
Sbjct: 703 GRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLS 762

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G+W+ + RV+++M++ G+ K  GCSWI +  R+Y+F  G+       +I ++ R
Sbjct: 763 NLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWR 822

Query: 617 LLTWEMEDEG 626
            L   + + G
Sbjct: 823 RLEERISEIG 832



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 206/451 (45%), Gaps = 48/451 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+  C + K  +  + +H  +       + Y L  R + +Y+  G+  D   +FD +  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N I WN  + G  ++      +KVF                           +++ S   
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVF---------------------------MDLVSDTD 141

Query: 140 LQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            Q   P  FTF     +V  AC        G+ IHG +I+ GL L +V +GN+L+ MYGK
Sbjct: 142 FQ---PDNFTF----PSVIKACGGILDVRLGEVIHGMVIKMGLVL-DVFVGNALVGMYGK 193

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISI 251
            G +  A  VF  M E +++SWNS+I     +G+   + D    M    G  PD  T+  
Sbjct: 194 CGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVT 253

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++  C     +D G  +  L+VK+G     +V +A + ++SKC  L ++   F + +  +
Sbjct: 254 ILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKN 313

Query: 312 YAVINVMISTYGRYGFGEVALELFQLM--LREDIRPTEFTLSCVLSS-IPIPPVEHGSQF 368
               N MIS +   G    A  L Q M    E+++  E T+  VL + +    +    + 
Sbjct: 314 VVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKEL 373

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H  + +  F  +  ++++ +  YAK G+++S+ ++F  +  + + SWN ++ G  QNG  
Sbjct: 374 HGYSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDP 432

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNY 459
            + L +  ++   G  PD  T++++LLAC +
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAH 463



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 169/324 (52%), Gaps = 18/324 (5%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  +  S    ++ VL   LI MY   G    +  VF NME  ++I WN+L+SG  
Sbjct: 62  GRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYT 121

Query: 223 NSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +G YG++       +  + + PD +T   VI AC  + ++  G+ +  + +K+G + + 
Sbjct: 122 RNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDV 181

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A + ++ KC  +++++++F+ +   +    N MI  +   GF   + +L   ML E
Sbjct: 182 FVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGE 241

Query: 342 D-IRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           + + P   T   V++ +P+      V+ G   H +A+K G     +V ++++ MY+K G 
Sbjct: 242 EGLLPDVVT---VVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGY 298

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVL 454
           ++ +   FVK + +++VSWNT++   +  G   E  ++ +E+  +G  +  + +T+  VL
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVL 358

Query: 455 LACNYGGFVDKGMLVFSAMKEEYG 478
            AC     +DK  L   ++KE +G
Sbjct: 359 PAC-----LDK--LQLRSLKELHG 375



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQ 306
            I +++ AC   ++++ G+++           N  VL+   I +++ C    DS  +F+ 
Sbjct: 45  AIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDN 104

Query: 307 LDRWDYAVINVMISTYGRYG-FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           ++  +    N ++S Y R G +G+V      L+   D +P  FT   V+ +   I  V  
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H M IK G   +  V ++L+ MY K G++D + ++F  + + +LVSWN+++   ++
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 425 NGRAAETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           NG + ++ D+  E+L EEGL PD +T+  +L  C   G VD GM +   +  + G+    
Sbjct: 225 NGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGI-HGLAVKLGLSEEV 283

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
                ++ +  + G L +A  ++           W +++ A ++ GDV    N+ + M
Sbjct: 284 MVNNAMVYMYSKCGYLNEA-QMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 150/332 (45%), Gaps = 49/332 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C   KS  + K IHG++ + G     ++G   L  Y   G +     LFD +  
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKD 514

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +S                               WN+MISGY+  G    +L +F K 
Sbjct: 515 KNLVS-------------------------------WNAMISGYSQNGLPYESLALFRKS 543

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
             +G++    +  I + +V  AC        GK+ HG ++++ L   +  +G S+IDMY 
Sbjct: 544 LSEGIQ----SHEIAIVSVFGACSQLSALRLGKEAHGYVLKA-LQTEDAFVGCSIIDMYA 598

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  +  VF  +++ ++ SWN++I      G+G+ A++ +  M+  G  PD +T   
Sbjct: 599 KSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIG 658

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLF----EQ 306
           ++ AC     +++G + F        +   +   A  ID+ ++  RL+D++RL     E+
Sbjct: 659 ILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEE 718

Query: 307 LDRWDYAVINVMISTYGRYGFGE-VALELFQL 337
            D   ++ +     T+G    GE VA +L +L
Sbjct: 719 ADNRIWSSLLRSCRTFGALEIGEKVAKKLLEL 750


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/614 (28%), Positives = 320/614 (52%), Gaps = 41/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S+L+    S K FD  + +HG + K G+  + Y+G+  +D+Y+                 
Sbjct: 51  SRLLKGIASAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYA----------------- 93

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K + ++ A   F EI EP+ VSWN++I+G+     +  A  +   M
Sbjct: 94  --------------KCERVEDAFGAFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLM 139

Query: 139 QLQG-VRPSGFTFSILLSTVSSA--CHG-KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +++  V     TF+ LL+ +     C+  KQ+H  +++ GL    + + N++I  Y   G
Sbjct: 140 EMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE-HEITICNAMISSYANCG 198

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           ++  A  VF  +    D+ISWNS+I+G       E A + F  M  +    D YT + ++
Sbjct: 199 LVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIV 258

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK--CNRLEDSVRLFEQLDRWD 311
           +AC+   +   GK +  L +K G    + V +A I ++ +     ++D++ LFE L   D
Sbjct: 259 SACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLFESLKPKD 318

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               N +++ + + G  E A++ F+ +   +I   ++  S VL S   +  ++ G Q H+
Sbjct: 319 LVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHA 378

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAA 429
           +A KS F+SN  V SSL+ MY+K G I+++ + F ++  K + ++WN +++G  Q+G   
Sbjct: 379 LATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMILGYAQHGSGQ 438

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
            +LD+F ++  + +  D +T  A+L AC++ G + +G+ + ++M+  Y + P  EHYA  
Sbjct: 439 VSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNSMEPVYKIQPRMEHYAAA 498

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG + K  ++  +MP  P   + ++ L      G++++   VA  +++++    
Sbjct: 499 VDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDH 558

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y  L+  Y+   +WE    VKK+M++ G+ KV G SWI I+N++  FNA +  H   +
Sbjct: 559 FAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVPGWSWIEIRNQVNAFNAEDRSHSLSK 618

Query: 610 KIYLVLRLLTWEME 623
           +IYL++  LT EM+
Sbjct: 619 EIYLMIEDLTQEMQ 632



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
           +++FDE+P+ D VSWN+MISGY SCG  + +  +F+ M+  G    G++FS LL  ++SA
Sbjct: 1   MRLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASA 60

Query: 161 CH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
                G+Q+HG +++ G    NV +G+SL+DMY K   +  AFG F+ + E + +SWN+L
Sbjct: 61  KRFDLGEQVHGLVVKGGYE-CNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNAL 119

Query: 218 ISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           I+G       + A      M   +  + D+ T + ++         +  KQV A  +K+G
Sbjct: 120 IAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLG 179

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELF 335
                 + +A I  ++ C  + D+ R+F+ L    D    N MI+   ++   E A ELF
Sbjct: 180 LEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELF 239

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPVEH---GSQFHSMAIKSGFDSNAVVASSLMEMYA 392
             M R  I    +T + ++S+      EH   G   H + IK G +    V+++L+ MY 
Sbjct: 240 TEMHRNWIETDIYTYTGIVSA--CSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYI 297

Query: 393 K--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           +  TG +  +  +F  L  +DLVSWN+IM G +QNG + + +  F  L    +  D    
Sbjct: 298 QFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAF 357

Query: 451 AAVLLACN 458
           +AVL +C+
Sbjct: 358 SAVLRSCS 365


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 182/660 (27%), Positives = 323/660 (48%), Gaps = 82/660 (12%)

Query: 48  AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI 107
           +H +L  R L LY+          LF   P    ++    +     +  L  +   FD +
Sbjct: 58  SHPHLTLRLLHLYTLSPDLATPAVLFRADPGP--VAATSLVSAYAVAGRLRDSAAFFDSV 115

Query: 108 P--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--GVRPSGFTFSILLSTVS----- 158
           P    D V  N+MIS +A    +  A+ +F  +      +RP  ++F+ LLS V      
Sbjct: 116 PVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDL 175

Query: 159 SACHGKQIHGSMIRSG----LSLSNVVLG-----------------------------NS 185
           +  H  Q+H ++ + G    LS+SN ++                               +
Sbjct: 176 AVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTT 235

Query: 186 LIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           ++  + + G ++ A   F  ++ E D++ WN++ISG   SG    A + F  M      P
Sbjct: 236 IVVGHVRKGDVHAARSAFEEIDGEFDVV-WNAMISGYVQSGMCAEAFELFRRMVSKRIPP 294

Query: 245 DEYTISIVINACTKLRNLDKGKQVFA--LSVKVGFLSNSI--VLSATIDLFSKCNRLEDS 300
           DE+T + +++AC        GK V    + ++  F+  +   V +A + L+SK  ++  +
Sbjct: 295 DEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVA 354

Query: 301 VRLFEQLDRWDYAVIN-------------------------------VMISTYGRYGFGE 329
            ++F+ +   D    N                               VM+S Y   G  E
Sbjct: 355 TKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAE 414

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL+LF  M  ED++P ++T +  +++   +  ++HG Q H+  ++ GF+++    ++L+
Sbjct: 415 DALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALL 474

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYA+ G++  +  +F+ +   D VSWN ++  L Q+G   E L++F++++ +G+ PDRI
Sbjct: 475 TMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRI 534

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           +   +L ACN+ G VD G   F +M+ ++G+ PGE+HYA +IDLL +AG++G+A D+  T
Sbjct: 535 SFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKT 594

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MPF+P  +IWE+IL    I GD++L    A+++  +       Y LL+  Y+  GRW   
Sbjct: 595 MPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDA 654

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            RV+K+MR  G+ K  GCSWI + N+++ F  G+ +H    ++Y  L ++  +M   G V
Sbjct: 655 ARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYV 714



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 216/457 (47%), Gaps = 61/457 (13%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF---GTSDDVL 70
           ++S+C+QL                H  + KLG  A   + N  + LY +    G + D  
Sbjct: 176 AVSHCTQL----------------HCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDAR 219

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP-EPDVVSWNSMISGYASCGYSD 129
           ++ DE+P+K+ ++W   + G ++  ++  A   F+EI  E DVV WN+MISGY   G   
Sbjct: 220 KVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVV-WNAMISGYVQSGMCA 278

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIR---SGLSLSNVVLG 183
            A E+F +M  + + P  FTF+ LLS  ++A    HGK +HG  IR     +  + + + 
Sbjct: 279 EAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVN 338

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI-----SGCFN--------------- 223
           N+L+ +Y K G +  A  +F +M   D++SWN+++     SGC +               
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL 398

Query: 224 ------SGY-----GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
                 SGY      E AL  F  MR     P +YT +  + AC +L  L  GKQ+ A  
Sbjct: 399 SWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHL 458

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V+ GF +++   +A + ++++C  ++D+  +F  +   D    N MIS  G++G G  AL
Sbjct: 459 VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREAL 518

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEM 390
           ELF  M+ + I P   +   +L++      V+ G Q F SM    G        + L+++
Sbjct: 519 ELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDL 578

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNG 426
             + G I  + ++   +      + W  I+ G   NG
Sbjct: 579 LGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRING 615


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 171/570 (30%), Positives = 294/570 (51%), Gaps = 36/570 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           + L  A+ VF+ I EP+++ WN+M  G+A       AL+++  M   G+ P+ +TF  LL
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 155 ST---VSSACHGKQIHGSMIRSGLSLS------------------------------NVV 181
            +   + ++  G QIHG +++ G  L                               +VV
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
              +L+  Y   G +  A  +F  +   D++SWN++ISG   +G  + AL+ F  M  + 
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE T+  VI+A  +  +++ G+QV +     GF SN  +++A ID +SKC  +E + 
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LF  L   D    N++I  Y      + AL LFQ MLR    P + T+  +L +   + 
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLG 310

Query: 361 PVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            ++ G   H    K   G  + + + +SL++MY+K G I+++ ++F  +  + L +WN +
Sbjct: 311 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAM 370

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GRA    D+F  + +  + PD IT   +L AC++ G +D G  +F +M   Y 
Sbjct: 371 IFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYK 430

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + P  EHY C+IDLL  +G   +A ++ STM  +P   IW S+L+A  ++G+V+L E  A
Sbjct: 431 ITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFA 490

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           + +  ++  +P  Y LL+  YA  GRW  + R++ ++   G+ KV GCS I I + ++ F
Sbjct: 491 QNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEF 550

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             G+  H   ++IY +L  +   +++ G V
Sbjct: 551 IIGDKFHPRNREIYGMLEEMEVLLQEAGFV 580



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 175/341 (51%), Gaps = 6/341 (1%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   K+      IHGH+ KLG+    Y+    + +Y +    +D  ++FD    ++
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      +++A  +FDEIP  DVVSWN+MISGY   G    ALE+F +M  
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             VRP   T   ++S  + +     G+Q+H  +   G   SN+ + N+LID Y K G + 
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFG-SNLKIVNALIDFYSKCGEME 247

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A G+FL +   D+ISWN LI G  +    + AL  F  M  SG SP++ T+  +++AC 
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 258 KLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L  +D G+   V+      G  + S + ++ ID++SKC  +E + ++F  +        
Sbjct: 308 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           N MI  +  +G    A ++F  M + +I+P + T   +LS+
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSA 408


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 177/618 (28%), Positives = 315/618 (50%), Gaps = 21/618 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNR----CLDLYSRFGTSDDVLQLFD 74
           S+ I +   F++F  +  IHG  F+  ++      NR    C  L +R    D+  ++FD
Sbjct: 3   SRAIFQRFRFRAFSMSHVIHGKSFR-SYSVTVEFQNREVLICNHLLNR--RLDEAREVFD 59

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           ++P  +   +   + G  +S+ L  AL +FDE+P  DVVSWNSMISG   CG  D A++M
Sbjct: 60  QVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKM 119

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           F +M  + V        +  + + + C   G       +   + + ++   N+++  Y +
Sbjct: 120 FDEMPERSV--------VSWTAMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHGYLQ 171

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G +  A  +F  M   ++ISW ++I G   +     AL+ F +M          T + V
Sbjct: 172 FGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCV 231

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I AC        G QV    +K GFL    V ++ I L++ C R EDS ++F ++     
Sbjct: 232 ITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKV 291

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSM 371
           AV   ++S Y      E AL +F  M+R  I P + T +  L+S   +  ++ G + H +
Sbjct: 292 AVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGV 351

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+K G  + A V +SL+ MY+ +G+++ +  +F+++ K+ +VSWN+I++G  Q+GR    
Sbjct: 352 AVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWA 411

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-EHYACII 490
             +F +++     PD IT   +L AC++ GF+ KG  +F  +      +  + +HY C++
Sbjct: 412 FVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMV 471

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           D+L + G+L +A  +  +M  +P   +W ++L A  ++ DV   E  A  + +L   S  
Sbjct: 472 DILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSA 531

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  YA  GRW ++ +++  M++ GI K  G SW+ I+ + + F +G+  H    +
Sbjct: 532 AYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDRPH--CLR 589

Query: 611 IYLVLRLLTWEMEDEGCV 628
           I+  L  L  ++++ G V
Sbjct: 590 IFEKLEFLREKLKELGYV 607


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 170/565 (30%), Positives = 303/565 (53%), Gaps = 21/565 (3%)

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           DV  LFDE+P K+ +S+N+ +        +  A   FD  PE D VSWN M++ Y   G 
Sbjct: 187 DVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR 246

Query: 128 SDYALEMF-SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
              A E+F S+ +   +     +++ L++        ++     + + +   +VV  N++
Sbjct: 247 IQEARELFDSRTEWDAI-----SWNALMAGYVQRSQIEE--AQKMFNKMPQRDVVSWNTM 299

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +  Y + G +  A  +F      D+ +W +++SG   +G  E A   F +M      PD+
Sbjct: 300 VSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDK 353

Query: 247 YTIS--IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
             +S   ++ A  + R +++ K++F         S + +L+     +++   L+++  +F
Sbjct: 354 NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTG----YAQAGMLDEARAIF 409

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
             + + D      M++ Y + GF E  L+LF+ M R          +CVLS+   I  +E
Sbjct: 410 GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALE 469

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q HS  IK+G+     V ++L+ MY K GS++ +   F ++++RD+VSWNT++ G  
Sbjct: 470 CGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYA 529

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           ++G   E L+VF+ + +    PD ITL  VL AC++ G V+KG+  F +M  ++GV    
Sbjct: 530 RHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKP 589

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY C+IDLL +AG+L +A+++   MPF+P  ++W ++L AS I+ + +L  N AE++ +
Sbjct: 590 EHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFE 649

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L+  +   Y LL+  YA  G+W  + +++ +M + G+ KV G SWI ++N+++TF+ G+ 
Sbjct: 650 LEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDS 709

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H   + IY  L  L   M+  G V
Sbjct: 710 VHPEREDIYAFLEDLDIRMKKAGYV 734



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 188/412 (45%), Gaps = 36/412 (8%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
           H F L         N  L  Y R G   +  +LFD   + + ISWN  + G ++   ++ 
Sbjct: 221 HYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEE 280

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A K+F+++P+ DVVSWN+M+SGYA  G    A  +F    ++ V    FT++ ++S  + 
Sbjct: 281 AQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV----FTWTAIVSGYAQ 336

Query: 159 ----------------------SACHGKQIHGSMIRSGLSL------SNVVLGNSLIDMY 190
                                 +A     +   M+     L       NV   N+++  Y
Sbjct: 337 NGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGY 396

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G+L  A  +F  M + D +SW ++++     G+ E  L  F  M   G   +    +
Sbjct: 397 AQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFA 456

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V++ C  +  L+ G Q+ +  +K G+     V +A + ++ KC  +E++   FE+++  
Sbjct: 457 CVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER 516

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQF 368
           D    N MI+ Y R+GFG+ ALE+F  M +   +P + TL  VL++      VE G S F
Sbjct: 517 DVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYF 576

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +SM    G  +     + ++++  + G +D +  +   +  + D   W  ++
Sbjct: 577 YSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL 628



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 66/279 (23%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+++ + C  ++  C    + +    +H  L K G+    ++GN  L +Y + G+ ++ 
Sbjct: 450 VNRSAFA-C--VLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEA 506

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+E+ +++ +SWN                               +MI+GYA  G+  
Sbjct: 507 HSAFEEMEERDVVSWN-------------------------------TMIAGYARHGFGK 535

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LS 178
            ALE+F  M+    +P   T   +L+  S        H  ++  G+S            +
Sbjct: 536 EALEVFDTMRKTSTKPDDITLVGVLAACS--------HSGLVEKGISYFYSMHRDFGVAT 587

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQF 234
                  +ID+ G+ G L  A  +  +M  E D   W +L+       NS  G  A ++ 
Sbjct: 588 KPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKI 647

Query: 235 YSMRYSGYSPDEYTISIVIN----ACTKLRNLDKGKQVF 269
           + +      P+   + ++++    +  K R++DK + + 
Sbjct: 648 FEL-----EPENAGMYVLLSNIYASSGKWRDVDKMRHIM 681


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 177/617 (28%), Positives = 313/617 (50%), Gaps = 37/617 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    + A  + G  +K  F     +    +D++ R G  D   +LF +I +      
Sbjct: 138 CGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCR 197

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L G  K   +D A++ F+++ E DVVSWN MI+  +  G    AL +  +M  +GVR
Sbjct: 198 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 257

Query: 145 PSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               T++  L+  +   S   GKQ+H  +IRS L   +  + ++LI++Y K G    A  
Sbjct: 258 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRS-LPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++++ + +SW  LI G         +++ F  MR    + D++ ++ +I+ C    +
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 376

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD---------- 311
           L  G+Q+ +L +K G     +V ++ I L++KC  L+++  +F  +   D          
Sbjct: 377 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 436

Query: 312 YAVI---------------------NVMISTYGRYGFGEVALELFQLML-REDIRPTEFT 349
           Y+ I                     N M+  Y ++G  E  L+++  ML ++D+ P   T
Sbjct: 437 YSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVT 496

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
              +      I   + G Q     +K+G   N  VA++ + MY+K G I  + ++F  L+
Sbjct: 497 YVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLN 556

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
            +D+VSWN ++ G +Q+G   +    F+++L +G  PD I+  AVL  C++ G V +G L
Sbjct: 557 GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKL 616

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F  M   +G+ PG EH++C++DLL +AG L +A D+   MP +P   +W ++L A  I+
Sbjct: 617 YFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIH 676

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           G+ +L E  A+ + +L  P    Y LL + Y+  G+ +   +V+K+MR  GI K  G SW
Sbjct: 677 GNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSW 736

Query: 589 IGIKNRIYTFNAGELQH 605
           + ++N+++ F A ++ H
Sbjct: 737 MEVENKVHVFKADDVSH 753



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 221/472 (46%), Gaps = 24/472 (5%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD-EIPQKNCIS 83
           C S  +   A+ +HG L  +G  +  +L N  L  Y   G   D  +L   +I + N I+
Sbjct: 30  CGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVIT 89

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS-------GYASCG------YSDY 130
            NI + G  K  +L  A ++FD +P  DV SWN+++S        + SCG       +  
Sbjct: 90  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQ 149

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
            L +F K    G  P        L  +   C G     S + S +    +   NS++  Y
Sbjct: 150 LLGLFWKFDFWG-DPD---VETALVDMFVRC-GYVDFASRLFSQIERPTIFCRNSMLAGY 204

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            KL  + +A   F +M E D++SWN +I+    SG    AL     M   G   D  T +
Sbjct: 205 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 264

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
             + AC +L +L  GKQ+ A  ++     +  V SA I+L++KC   +++ R+F  L   
Sbjct: 265 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR 324

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFH 369
           +     V+I    +Y     ++ELF  M  E +   +F L+ ++S       +  G Q H
Sbjct: 325 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 384

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           S+ +KSG +   VV++SL+ +YAK G + ++  +F  + +RD+VSW +++   +Q G   
Sbjct: 385 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNII 444

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
           +  + F+ +       + IT  A+L A    G  + G+ ++SAM  +  V P
Sbjct: 445 KAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 492



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 186/432 (43%), Gaps = 72/432 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S +Y S L   C    S  + K +H  + +       Y+ +  ++LY++ G+  +  ++F
Sbjct: 260 STTYTSSLT-ACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVF 318

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFD----EIPEPDVVSWNSMISGYASCGYSD 129
           + +  +N +SW + + G L+ +    ++++F+    E+   D  +  ++ISG        
Sbjct: 319 NSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG-------- 370

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
                F++M L                    C G+Q+H   ++SG + + +V+ NSLI +
Sbjct: 371 ----CFNRMDL--------------------CLGRQLHSLCLKSGHNRA-IVVSNSLISL 405

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLIS------------------------------ 219
           Y K G L  A  VF +M E DI+SW S+I+                              
Sbjct: 406 YAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAML 465

Query: 220 GCF-NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           G +   G  E  L  + +M      +PD  T   +   C  +     G Q+   +VK G 
Sbjct: 466 GAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL 525

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
           + N  V +A I ++SKC R+ ++ +LF+ L+  D    N MI+ Y ++G G+ A + F  
Sbjct: 526 ILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDD 585

Query: 338 MLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK-SGFDSNAVVASSLMEMYAKTG 395
           ML +  +P   +   VLS       V+ G  +  M  +  G        S ++++  + G
Sbjct: 586 MLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAG 645

Query: 396 SIDSSTEIFVKL 407
            +  + ++  K+
Sbjct: 646 HLTEAKDLIDKM 657


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 308/605 (50%), Gaps = 47/605 (7%)

Query: 34  AKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            + +H H+ + G N +   +GN  +++Y++ G   D                        
Sbjct: 405 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD------------------------ 440

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                  A  VF+ + E D VSWNS+ISG      S+ A E F +M+  G  PS FT   
Sbjct: 441 -------ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFT--- 490

Query: 153 LLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           L+ST+SS         G+QIH   ++ GL  ++V + N+L+ +Y + G       VF  M
Sbjct: 491 LISTLSSCASLGWIMLGEQIHCDGLKLGLD-TDVSVSNALLALYAETGCFTECLKVFSLM 549

Query: 207 EELDIISWNSLISGCFNSGYG-ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            E D +SWNS+I    +S      A+  F  M   G+     T   +++A + L   +  
Sbjct: 550 PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVS 609

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGR 324
            Q+ AL +K     ++ + +A +  + KC  + +  ++F ++ +  D    N MIS Y  
Sbjct: 610 HQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIH 669

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                 A++L   M+++  R   FT + +LS+   +  +E G + H+  I++  +S+ VV
Sbjct: 670 NELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVV 729

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L++MY+K G ID ++  F  +  R++ SWN+++ G  ++G   + L +F  ++ +G 
Sbjct: 730 GSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ 789

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
           PPD +T   VL AC++ GFV++G   F +M E Y + P  EH++C++DLL +AG+L +  
Sbjct: 790 PPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVG 849

Query: 504 DITSTMPFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           D  ++MP +P   IW ++L A   A   + +L    AE +++L+  + + Y LL   YA 
Sbjct: 850 DFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYAS 909

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             +WE + + +  M++  + K  GCSW+ +K+ ++ F AG+  H     IY  LR L  +
Sbjct: 910 GEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRK 969

Query: 622 MEDEG 626
           M D G
Sbjct: 970 MRDAG 974



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 251/522 (48%), Gaps = 47/522 (9%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           K GF    Y+ +  +  ++RFG +DD   +F+++  +N +S N  + GL+K    + A K
Sbjct: 310 KSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAK 369

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           VF E+   D+V  NS    Y         L  FS+            FS+L         
Sbjct: 370 VFHEMK--DLVGINS--DSYV------VLLSAFSE------------FSVLEEGRRK--- 404

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  +IR+GL+ + V +GN L++MY K G +  A  VF  M E D +SWNSLISG  
Sbjct: 405 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 464

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +   E A + F+ MR +G  P  +T+   +++C  L  +  G+Q+    +K+G  ++  
Sbjct: 465 QNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 524

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV----ALELFQLM 338
           V +A + L+++     + +++F  +  +D    N +I   G     E     A++ F  M
Sbjct: 525 VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVI---GALSDSEASVSQAVKYFLQM 581

Query: 339 LRED---IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           +R      R T   +   +SS+ +  V H  Q H++ +K     +  + ++L+  Y K G
Sbjct: 582 MRGGWGLSRVTFINILSAVSSLSLHEVSH--QIHALVLKYCLSDDTAIGNALLSCYGKCG 639

Query: 396 SIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            ++   +IF ++ + RD VSWN+++ G   N    + +D+   ++++G   D  T A +L
Sbjct: 640 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATIL 699

Query: 455 LACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            AC     +++GM V +       E  V+ G    + ++D+  + G++  A      MP 
Sbjct: 700 SACASVATLERGMEVHACGIRACLESDVVVG----SALVDMYSKCGRIDYASRFFELMPL 755

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMM-DLQLPSPLPY 552
           +   S W S++   A +G  +    +  RMM D Q P  + +
Sbjct: 756 RNVYS-WNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTF 796



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 207/453 (45%), Gaps = 61/453 (13%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +H    K GF  + +L N  +++Y R G      +LFDE+  +N ++W  CL     
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTW-ACL----- 143

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                    ISGY   G  D A   F  M   G  P+ + F   
Sbjct: 144 -------------------------ISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSA 178

Query: 154 LSTVS----SACH-GKQIHG--SMIRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVFLN 205
           L        S C  G QIHG  S  R G   S+VV+ N LI MYG  L     A  VF  
Sbjct: 179 LRACQESGPSGCKLGVQIHGLISKTRYG---SDVVVCNVLISMYGSCLDSANDARSVFDG 235

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG----YSPDEYTI-SIVINACTKLR 260
           +   + ISWNS+IS     G    A D F SM+  G    + P+EYT  S++  AC+   
Sbjct: 236 IGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACS--- 292

Query: 261 NLDKG----KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++D G    +Q+ A   K GFL +  V SA +  F++    +D+  +FEQ+   +   +N
Sbjct: 293 SVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 352

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-----EHGSQFHSM 371
            ++    +   GE A ++F  M ++ +     +   +LS+     V       G + H+ 
Sbjct: 353 GLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAH 411

Query: 372 AIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            I++G + N V + + L+ MYAK+G+I  +  +F  + ++D VSWN+++ GL QN  + +
Sbjct: 412 VIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSED 471

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
             + F  +   G  P   TL + L +C   G++
Sbjct: 472 AAESFHRMRRTGSMPSNFTLISTLSSCASLGWI 504



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 203/447 (45%), Gaps = 41/447 (9%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S       + IH    KLG +    + N  L LY+  G   + L++F  +P+ + 
Sbjct: 495 LSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQ 554

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SWN  +  L  S+                                   A++ F +M   
Sbjct: 555 VSWNSVIGALSDSE------------------------------ASVSQAVKYFLQMMRG 584

Query: 142 GVRPSGFTFSILLSTVSS-ACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G   S  TF  +LS VSS + H    QIH  +++  LS  +  +GN+L+  YGK G +  
Sbjct: 585 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLS-DDTAIGNALLSCYGKCGEMNE 643

Query: 199 AFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
              +F  M E  D +SWNS+ISG  ++     A+D  + M   G   D +T + +++AC 
Sbjct: 644 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 703

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +  L++G +V A  ++    S+ +V SA +D++SKC R++ + R FE +   +    N 
Sbjct: 704 SVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 763

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKS 375
           MIS Y R+G GE AL+LF  M+ +   P   T   VLS+   +  VE G   F SM+   
Sbjct: 764 MISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVY 823

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQ-NGRAAETLD 433
                    S ++++  + G +D   +    +  K +++ W T++    + NGR  E   
Sbjct: 824 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 883

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYG 460
              E+L E  P + +    VLLA  Y 
Sbjct: 884 RAAEMLLELEPQNAVNY--VLLANMYA 908



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 16/307 (5%)

Query: 146 SGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           S  TF  L++    +C     +++H   I+ G  + N+ L N+LI++Y ++G L  A  +
Sbjct: 70  SSETFESLINRYQGSCCSEEARELHLQSIKYGF-VGNLFLSNTLINIYVRIGDLGSAQKL 128

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--LR 260
           F  M   ++++W  LISG   +G  + A  +F  M  +G+ P+ Y     + AC +    
Sbjct: 129 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPS 188

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAVINVMI 319
               G Q+  L  K  + S+ +V +  I ++  C +   D+  +F+ +   +    N +I
Sbjct: 189 GCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSII 248

Query: 320 STYGRYGFGEVALELFQLMLREDI----RPTEFTLSCVLSSIPIPPVEHG----SQFHSM 371
           S Y R G    A +LF  M +E +    +P E+T   ++++     V+ G     Q  + 
Sbjct: 249 SVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITT-ACSSVDFGLCVLEQMLAR 307

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             KSGF  +  V+S+L+  +A+ G  D +  IF ++  R++VS N +M+GL +  +    
Sbjct: 308 VEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAA 367

Query: 432 LDVFEEL 438
             VF E+
Sbjct: 368 AKVFHEM 374



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           E   + H  +IK GF  N  ++++L+ +Y + G + S+ ++F ++  R+LV+W  ++ G 
Sbjct: 88  EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           TQNG+  E    F +++  G  P+     + L AC   G
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 186



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 37/208 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +    +H    +    +   +G+  +D+YS+ G  D   + F+ +P 
Sbjct: 696 ATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPL 755

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN                               SMISGYA  G+ + AL++F++M
Sbjct: 756 RNVYSWN-------------------------------SMISGYARHGHGEKALKLFTRM 784

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L G  P   TF  +LS  S       G +   SM         V   + ++D+ G+ G 
Sbjct: 785 MLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGK 844

Query: 196 LYYAFGVFLNMEEL--DIISWNSLISGC 221
           L    G F+N   +  +++ W +++  C
Sbjct: 845 L-DEVGDFINSMPMKPNVLIWRTVLGAC 871


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 303/625 (48%), Gaps = 35/625 (5%)

Query: 4    YLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
            ++++ H  K      S L+  C S +   + + +HG + K G  ++  + N  L +Y++ 
Sbjct: 442  WMRRTHP-KTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQA 500

Query: 64   GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
            G+S+D                               A  VF  +P  D++SWNSM++ + 
Sbjct: 501  GSSED-------------------------------AELVFHTMPARDLISWNSMMASHV 529

Query: 124  SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG 183
              G   +A+ +  +M       +  TF+  LS   +    K +H  +I   +   N+++G
Sbjct: 530  EDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVH-HNLIIG 588

Query: 184  NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
            N+L+ MYGK G++  A  V   M E D+++WN+LI G  +       +  F  MR  G  
Sbjct: 589  NTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLL 648

Query: 244  PDEYTISIVINACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
             +  TI  ++  C     L K G  + A  V  GF  ++ V S+ I ++++C  L  S  
Sbjct: 649  SNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSY 708

Query: 303  LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPP 361
            +F+ L   + +  N + S    YG GE AL+    M  + +   +F+ S  L++I  +  
Sbjct: 709  IFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTV 768

Query: 362  VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
            ++ G Q HS  IK GF+ +  V ++ M+MY K G ID    I      R   SWN ++  
Sbjct: 769  LDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISA 828

Query: 422  LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
            L ++G   +  + F E+L+ GL PD +T  ++L AC++GG VD+G++ FS+M  E+GV  
Sbjct: 829  LARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPT 888

Query: 482  GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
              EH  CIIDLL ++G+L +A      MP  P   +W S+L A  ++G+++L    A+R+
Sbjct: 889  AIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRL 948

Query: 542  MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG 601
             +L       Y L +   A   RW  +  V+K M    + K   CSWI +KN++ TF  G
Sbjct: 949  FELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMG 1008

Query: 602  ELQHHGGQKIYLVLRLLTWEMEDEG 626
            +  H    +IY  L  L     +EG
Sbjct: 1009 DQFHPQSAQIYAKLEELRKMTREEG 1033



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 229/499 (45%), Gaps = 37/499 (7%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ IHG++ K G  ++ ++G   L  Y   G+                            
Sbjct: 268 ARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGS---------------------------- 299

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              +  A K+F+EI EP++VSW S++  YA  G++   L ++  ++  G+  +G T + +
Sbjct: 300 ---VSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATV 356

Query: 154 LSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           + T         G QI G +I+SGL  S+V + NSLI M+G    +  A  VF NM+E D
Sbjct: 357 IRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERD 416

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            ISWNS+I+   ++G  E +L  F+ MR +    D  TIS ++ AC   ++L  G+ +  
Sbjct: 417 TISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHG 476

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L  K G  SN  V ++ + ++++    ED+  +F  +   D    N M++++   G    
Sbjct: 477 LITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSH 536

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           A+ L   ML+        T +  LS+     +E     H+  I      N ++ ++L+ M
Sbjct: 537 AILLLVEMLKTRKAMNYVTFTTALSA--CYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTM 594

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G +D + ++   + +RD+V+WN ++ G   +     T+  F  +  EGL  + IT+
Sbjct: 595 YGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITI 654

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
             +L  C    ++ K  +   A     G        + +I +  Q G L  +  I   + 
Sbjct: 655 VNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLA 714

Query: 511 FQPGCSIWESILRASAIYG 529
                S W +I  A+A YG
Sbjct: 715 -NKNSSTWNAIFSANAHYG 732



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 212/432 (49%), Gaps = 19/432 (4%)

Query: 44  LGFNAHTYLGNRCLDLYSRF----------GTSDDVLQLF--DEIPQKNCISWNICLRGL 91
           L +  HT++ N      SRF          G     L      ++ Q+N    N  +   
Sbjct: 133 LSYGIHTFIRNHSNPQVSRFLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMY 192

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
            K  ++  A  VFD++ + +  SWN+MISG+   G+   A++ F  M   GV PS +  +
Sbjct: 193 SKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIA 252

Query: 152 ILLSTVS-SACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +++    S C     +QIHG +++ GL +SNV +G SL+  YG  G +  A  +F  +E
Sbjct: 253 SMVTACDRSGCMTEGARQIHGYVVKCGL-MSNVFVGTSLLHFYGTHGSVSEANKLFEEIE 311

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E +I+SW SL+    ++G+ +  L+ +  +R++G      T++ VI  C    +   G Q
Sbjct: 312 EPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQ 371

Query: 268 VFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           +    +K G  ++S+ V ++ I +F   + +E++ R+F  +   D    N +I+     G
Sbjct: 372 ILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNG 431

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             E +L  F  M R   +    T+S +L +      ++ G   H +  KSG +SN  V +
Sbjct: 432 RFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCN 491

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           SL+ MYA+ GS + +  +F  +  RDL+SWN++M    ++G+ +  + +  E+L+     
Sbjct: 492 SLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAM 551

Query: 446 DRITLAAVLLAC 457
           + +T    L AC
Sbjct: 552 NYVTFTTALSAC 563



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 181/376 (48%), Gaps = 14/376 (3%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            S +S    GK +H   ++  +   N    N+L++MY K G + YA  VF  M + +  S
Sbjct: 157 FSEISEGNVGKALHALCVKDVIQ-QNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDAS 215

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG-KQVFALS 272
           WN++ISG    G+   A+  F  M  +G +P  Y I+ ++ AC +   + +G +Q+    
Sbjct: 216 WNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYV 275

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK G +SN  V ++ +  +     + ++ +LFE+++  +      ++  Y   G  +  L
Sbjct: 276 VKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVL 335

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAV-VASSLMEM 390
            +++ +    +  T  T++ V+ +  +      G Q     IKSG D+++V VA+SL+ M
Sbjct: 336 NIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISM 395

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           +    S++ ++ +F  + +RD +SWN+I+     NGR  E+L  F  +       D IT+
Sbjct: 396 FGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITI 455

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQAGQLGKAIDIT 506
           +A+L AC     +  G  +   + +      G E   C+    + +  QAG    A  + 
Sbjct: 456 SALLPACGSAQHLKWGRGLHGLITKS-----GLESNVCVCNSLLSMYAQAGSSEDAELVF 510

Query: 507 STMPFQPGCSIWESIL 522
            TMP +   S W S++
Sbjct: 511 HTMPARDLIS-WNSMM 525


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  288 bits (736), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 182/632 (28%), Positives = 313/632 (49%), Gaps = 40/632 (6%)

Query: 1    MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
            M  Y+ +  +     ++ S ++  C    SF   K +H    K   +   ++ N  LD+Y
Sbjct: 423  MFQYMMRYTLQTDEFTFVS-ILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMY 481

Query: 61   SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
            S++G   D   LF  IP K                               D +SWN++  
Sbjct: 482  SKYGAIGDAKALFSLIPYK-------------------------------DSISWNALTV 510

Query: 121  GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSL 177
            G A     + A+ M  +M+L G+ P   +FS  +   S + +   GKQIH   I+ G+  
Sbjct: 511  GLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGI-C 569

Query: 178  SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            SN  +G+SLID+Y K G +  +  +F  ++   I+  N+LI+G   +   + A+  F  +
Sbjct: 570  SNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQV 629

Query: 238  RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNR 296
               G  P   T S +++ C+   N   GKQV   ++K G L +  +L  ++  ++ K   
Sbjct: 630  LKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKM 689

Query: 297  LEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            LED+ +L  ++ D  +      +IS Y + G+G+ +L  F  M   ++R  E T + VL 
Sbjct: 690  LEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLK 749

Query: 356  SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLV 413
            +   +     G + H +  KSGF S     S+L++MY+K G + SS E F +L +K+D++
Sbjct: 750  ACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIM 809

Query: 414  SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
             WN++++G  +NG A E L +F+++ E  + PD +T   VL+AC + G + +G   F +M
Sbjct: 810  PWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSM 869

Query: 474  KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            ++ YG+ P  +HYAC IDLL + G L +A +    +PF+P   +W + L A  ++ D + 
Sbjct: 870  RKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEER 929

Query: 534  TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
             +  A ++++L+      Y LL+  +A  G W      ++ MR+ G+ K  GCSWI + N
Sbjct: 930  GKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGN 989

Query: 594  RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
            +   F   +  H    +IY +L  LT  M+ +
Sbjct: 990  KTSLFLVQDKYHPDNLRIYEMLGDLTGMMKKD 1021



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 234/478 (48%), Gaps = 42/478 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C       + + +H  + K GF++  +     +D+Y++ G   +  ++FD I   +
Sbjct: 174 VLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPD 233

Query: 81  CISWN-----------------------------------ICLRGLLKSDNLDTALKVFD 105
            I W+                                     +  L  S  LD A  +  
Sbjct: 234 TICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLK 293

Query: 106 EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH 162
           ++P P  V+WN++ISG+A  G     L ++  M+  G+ P+  TF+ +LS  ++      
Sbjct: 294 KMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVE 353

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H + +  GL  +NV +G+SLI++Y K G    A  VF    E +I+ WN++++G  
Sbjct: 354 GQQMHAAAVMHGLD-ANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFV 412

Query: 223 NSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +   E A+  F Y MRY+    DE+T   ++ ACT L +   GKQV  +++K     + 
Sbjct: 413 QNELPEEAIRMFQYMMRYT-LQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISL 471

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +AT+D++SK   + D+  LF  +   D    N +     +    E A+ + + M   
Sbjct: 472 FVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLH 531

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I P + + S  +++   I   E G Q H +AIK G  SN  V SSL+++Y+K G ++SS
Sbjct: 532 GITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS 591

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +IF ++D   +V  N ++ G  QN    E + +F+++L++GL P  +T +++L  C+
Sbjct: 592 RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 649



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/540 (25%), Positives = 254/540 (47%), Gaps = 51/540 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++    + K+F   + +H      G +A+ ++G+  ++LY++ G   D   +FD   +
Sbjct: 339 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCE 398

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + WN  L G ++           +E+PE                     A+ MF  M
Sbjct: 399 KNIVMWNAMLTGFVQ-----------NELPEE--------------------AIRMFQYM 427

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               ++   FTF  +L     +SS   GKQ+H   I++ + +S + + N+ +DMY K G 
Sbjct: 428 MRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS-LFVANATLDMYSKYGA 486

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F  +   D ISWN+L  G   +   E A+     MR  G +PD+ + S  INA
Sbjct: 487 IGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINA 546

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ +R  + GKQ+  L++K G  SN  V S+ IDL+SK   +E S ++F Q+D      I
Sbjct: 547 CSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPI 606

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIK 374
           N +I+ + +    + A++LFQ +L++ ++P+  T S +LS          G Q H   +K
Sbjct: 607 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLK 666

Query: 375 SG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETL 432
           SG    + ++  SL  +Y K+  ++ + ++  ++ D ++L  W  I+ G  QNG    +L
Sbjct: 667 SGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSL 726

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG------EEHY 486
             F  +    +  D  T A+VL AC+        +  F+  KE +G++        E   
Sbjct: 727 VSFWRMRHCNVRSDEATFASVLKACS-------DVTAFADGKEIHGLITKSGFGSYETAT 779

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           + +ID+  + G +  + +    +  +     W S++   A  G       + ++M +LQ+
Sbjct: 780 SALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQI 839



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 37/303 (12%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           + +HG ++R G  L    LG+SL+++Y K G + YA+       E    + +SL+S    
Sbjct: 86  RALHGRILRGGSPLLGR-LGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHAR 144

Query: 224 SGYGELALDQFYSMR-YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           SG     L  F  +R  +G  PD++ +++V++AC+++  L  G+QV    VK GF S+  
Sbjct: 145 SGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVF 204

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
             +A +D+++KC  + ++ R+F+ +   D    + MI+ Y R G  + AL LF  M +  
Sbjct: 205 CEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 264

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P + TL  ++S++                                  A +G +D +T 
Sbjct: 265 SAPDQVTLVTIISTL----------------------------------ASSGRLDHATA 290

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL-LACNYGG 461
           +  K+     V+WN ++ G  Q+G     L +++++   GL P R T A++L  A N   
Sbjct: 291 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 350

Query: 462 FVD 464
           FV+
Sbjct: 351 FVE 353



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           RP +F L+ VLS+   +  + +G Q H   +KSGF S+    ++L++MYAK G + ++  
Sbjct: 165 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 224

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  +   D + W++++    + G   E L +F  + + G  PD++TL  ++      G 
Sbjct: 225 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGR 284

Query: 463 VDKGMLVFSAM 473
           +D    +   M
Sbjct: 285 LDHATALLKKM 295


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  288 bits (736), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 167/574 (29%), Positives = 300/574 (52%), Gaps = 39/574 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   ++FD  + +H  + K G N  +++    +D+Y++ G              
Sbjct: 107 SHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCG-------------- 151

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             ++ +  VFDE  + +V SW+SMI+GY     +   L +F++M
Sbjct: 152 -----------------EIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRM 194

Query: 139 QLQGVRPSGFTFSILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + + +  +  T  IL+       A H GK +HG +I+ G+ L + ++  +L+D+Y K GV
Sbjct: 195 REELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLV-TALLDLYAKCGV 253

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  +  +DI+SW ++I G   +G  E AL  F         P++ TI+ V ++
Sbjct: 254 VRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSS 313

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C++L NL+ G+ +  LS+K+G   + IV ++ +D ++KC    D+  +FE +   D    
Sbjct: 314 CSQLLNLNLGRSIHGLSIKLGS-RDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAW 372

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N +IS + + G    ALELF  M    + P   TL  VLS+   +  ++ GS FH+ A+K
Sbjct: 373 NSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVK 432

Query: 375 SGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
            G   SN  V ++L+  YAK G  +S+  IF  +D++  V+W+ ++ G    G    +L 
Sbjct: 433 RGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLS 492

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           +F ++L+  L P+     ++L AC++ G + +G  +F+ + ++Y ++P  +HY C++DLL
Sbjct: 493 IFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLL 552

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG+L +A+D    MP QP  S++ + L    ++    L E   +RM++L       Y 
Sbjct: 553 ARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGDACYYV 612

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587
           L+   YA   RW  + +V+++M++ G+ K  GCS
Sbjct: 613 LMCNLYASDARWSKVKQVRELMKQRGLMKTPGCS 646



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 189/365 (51%), Gaps = 7/365 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           LD A  VFD IP PD +SW  +I  Y         +  +++M++         FS +L  
Sbjct: 53  LDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKA 112

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            S + +   G+++H  +++ G   S V  G  L+DMY K G +  +  VF    + ++ S
Sbjct: 113 CSESRNFDEGRKVHCQIVKFGNPDSFVFTG--LVDMYAKCGEIECSRSVFDENLDRNVFS 170

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W+S+I+G   +   +  L  F  MR      ++ T+ I+++AC KL  L +GK +    +
Sbjct: 171 WSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLI 230

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G    S +++A +DL++KC  + D+  +F++L   D      MI  Y + G  E AL+
Sbjct: 231 KCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALK 290

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF    +  + P + T++ V SS   +  +  G   H ++IK G   + +V +SL++ YA
Sbjct: 291 LFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-SRDPIVTNSLVDFYA 349

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K      +  +F  +  RD+V+WN+I+   +QNG A E L++F ++    + PD +TL +
Sbjct: 350 KCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVS 409

Query: 453 VLLAC 457
           VL AC
Sbjct: 410 VLSAC 414



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 155/298 (52%), Gaps = 9/298 (3%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF-N 223
           ++H  ++  GL+  ++     L+ +YG  G L  A  VF  +   D +SW  +I   F N
Sbjct: 23  EMHAYLVVQGLT-RDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLN 81

Query: 224 SGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           S + ++    FY+ MR      D    S V+ AC++ RN D+G++V    VK G   +S 
Sbjct: 82  SEFRDIV--GFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGN-PDSF 138

Query: 283 VLSATIDLFSKCNRLEDSVRLF-EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           V +  +D+++KC  +E S  +F E LDR  ++  + MI+ Y +    +  L LF  M  E
Sbjct: 139 VFTGLVDMYAKCGEIECSRSVFDENLDRNVFS-WSSMIAGYVQNNLAQDGLVLFNRMREE 197

Query: 342 DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I   + TL  ++ +   +  +  G   H   IK G +  + + ++L+++YAK G +  +
Sbjct: 198 LIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDA 257

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             +F +L   D+VSW  +++G TQNG   E L +F +  +  + P+ +T+A+V  +C+
Sbjct: 258 RSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCS 315


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 183/623 (29%), Positives = 324/623 (52%), Gaps = 55/623 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L+D           + IH   FKLGF  + ++    + +YSRFG          
Sbjct: 225 LKACGTLVD----------GRRIHCWAFKLGFQWNVFVAASLIHMYSRFG---------- 264

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                          G+ +S        +FD++P  D+ SWN+MISG    G +  AL++
Sbjct: 265 -------------FTGIARS--------LFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 303

Query: 135 FSKMQLQGVRPSGFTF-SIL-----LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLID 188
             +M+L+G++ +  T  SIL     L  +S+A     IH  +I+ GL   ++ + N+LI+
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM---LIHLYVIKHGLEF-DLFVSNALIN 359

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G L  A   F  M   D++SWNS+I+    +     A   F  M+ +G+ PD  T
Sbjct: 360 MYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLT 419

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQL 307
           +  + +   + R+    + V    ++ G+L   +V+ +A +D+++K   L+ + ++FE +
Sbjct: 420 LVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEII 479

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHG 365
              D    N +I+ Y + G    A+E++++M   ++I P + T   +L +   +  ++ G
Sbjct: 480 LVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 539

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H   IK+    +  VA+ L+++Y K G +  +  +F ++ +   V+WN I+     +
Sbjct: 540 MRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIH 599

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G A +TL +F E+L+EG+ PD +T  ++L AC++ GFV++G   F  M +EYG+ P  +H
Sbjct: 600 GHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKH 658

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           Y C++DLL +AG L  A      MP QP  SIW ++L A  I+G+++L +  ++R+ ++ 
Sbjct: 659 YGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVD 718

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             +   Y LL+  YA  G+WE + +V+ + R+ G+ K  G S I +  ++  F  G   H
Sbjct: 719 SKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSH 778

Query: 606 HGGQKIYLVLRLLTWEMEDEGCV 628
              ++IY  LR+LT +M+  G +
Sbjct: 779 PKCKEIYEELRVLTAKMKSLGYI 801



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 147/567 (25%), Positives = 262/567 (46%), Gaps = 52/567 (9%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           FAK +H  L   G     ++  R ++LY+  G                 +S + C     
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGD----------------VSLSRC----- 172

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGVRPSGFTFS 151
                      FD+IP+ DV +WNSMIS Y   G+   A+  F ++ L   +RP  +TF 
Sbjct: 173 ----------TFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 222

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            +L    +   G++IH    + G    NV +  SLI MY + G    A  +F +M   D+
Sbjct: 223 PVLKACGTLVDGRRIHCWAFKLGFQW-NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDM 281

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWN++ISG   +G    ALD    MR  G   +  T+  ++  C +L ++     +   
Sbjct: 282 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K G   +  V +A I++++K   LED+ + F+Q+   D    N +I+ Y +      A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGF-DSNAVVASSLME 389
              F  M     +P   TL  + S +      ++    H   ++ G+   + V+ +++++
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRI 448
           MYAK G +DS+ ++F  +  +D++SWNT++ G  QNG A+E ++V++ + E + + P++ 
Sbjct: 462 MYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 521

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-----ACIIDLLCQAGQLGKAI 503
           T  ++L A  + G + +GM +         V+    H       C+ID+  + G+L  A+
Sbjct: 522 TWVSILPAYAHVGALQQGMRIHGR------VIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMR 562
            +   +P Q     W +I+    I+G  + T  +   M+D  + P  + +  L  A +  
Sbjct: 576 SLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 563 GRWEAIVRVKKVMRKNGIN---KVTGC 586
           G  E      ++M++ GI    K  GC
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGC 661


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 182/625 (29%), Positives = 311/625 (49%), Gaps = 67/625 (10%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C+ L+D        +  +++HG++ ++G +   Y GN  +++YS+            
Sbjct: 115 LKACAMLMD-------LNLGESLHGYIIRVGLDFDLYTGNALMNMYSK------------ 155

Query: 75  EIPQKNCISWNICLRGLLKSDNLDT-ALKVFDEIPE-PDVVSWNSMISGYASCGYSDYAL 132
                        LR L KS      A +V DE+ E    V   S++ G      SD   
Sbjct: 156 -------------LRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDI-- 200

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMI------RSGL-SLSNVVLGNS 185
                          F + +       +C  ++    ++      RS    +    LG  
Sbjct: 201 -------------EAFNYDV-------SCRSREFEAQVLEIDYKPRSEYREMEACNLGQQ 240

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSP 244
           + D+   + V      +F  M E D++SWN++I+G   +G YGE  L     M  +   P
Sbjct: 241 IKDISHSMSV-DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGE-TLTMVREMGGANLKP 298

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D +T+S V+    +  ++ KGK++   S++ G  +   V S+ ID+++KC R+ DS R+F
Sbjct: 299 DSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVF 358

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH 364
             L   D    N +I+   + G  +  L+ F+ ML   I+P  ++ S ++ +       H
Sbjct: 359 TLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLH 418

Query: 365 -GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H    ++GFD N  +ASSL++MYAK G+I ++ +IF ++  RD+VSW  ++MG  
Sbjct: 419 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCA 478

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
            +G A + +++FE++  EG+ P+ +   AVL AC++ G VD+    F++M  ++G+ PG 
Sbjct: 479 LHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGV 538

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHYA + DLL +AG+L +A D    MP  P  S+W ++L A  ++ +V + E VA R+++
Sbjct: 539 EHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILE 598

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           +   +   Y LL   Y+   RW+   + +  +R+ GI K   CSWI ++N++Y F AG+ 
Sbjct: 599 VDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDE 658

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H   +KI   + +L   ME EG V
Sbjct: 659 SHPCYEKIREAMEVLMELMEKEGYV 683



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 194/442 (43%), Gaps = 27/442 (6%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  +L++F+ +  P  ++W S+I  Y S G    +L  F  M   G+ P    F  +L  
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA----FGVFLNMEEL 209
            +       G+ +HG +IR GL   ++  GN+L++MY KL  L  +     G    ++E+
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDF-DLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEM 176

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
              + +   +       G    D   +  Y          + V+    K R+  +  +  
Sbjct: 177 TERTRSVRTASVLVGNQGRKVSD-IEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEAC 235

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR-LFEQLDRWDYAVINVMISTYGRYGFG 328
            L  ++  +S+S+ +              DSVR +FE +   D    N +I+   R G  
Sbjct: 236 NLGQQIKDISHSMSV--------------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLY 281

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSL 387
              L + + M   +++P  FTLS VL  I     +  G + H  +I+ G D+   VASSL
Sbjct: 282 GETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSL 341

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK   +  S  +F  L +RD +SWN+I+ G  QNG   E L  F ++L   + P  
Sbjct: 342 IDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKS 401

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
            + ++++ AC +   +  G  +   +    G        + ++D+  + G +  A  I  
Sbjct: 402 YSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFD 460

Query: 508 TMPFQPGCSIWESILRASAIYG 529
            M  +   S W +++   A++G
Sbjct: 461 RMRLRDMVS-WTAMIMGCALHG 481



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 35/311 (11%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           ++ S    +Q+H  +++     S++   + L+ +Y  + +L+ +  +F  +     ++W 
Sbjct: 20  SIKSRSQAQQLHAQVLK--FQASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWK 77

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           S+I    + G    +L  F  M  SG  PD      V+ AC  L +L+ G+ +    ++V
Sbjct: 78  SVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRV 137

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVR--------LFEQLDR-WDYAVINVMISTYGRYG 326
           G   +    +A ++++SK   L+ S R        L E  +R       +V++   GR  
Sbjct: 138 GLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGR-- 195

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
             +V+          DI    + +SC          E  +Q   +  K   +   + A +
Sbjct: 196 --KVS----------DIEAFNYDVSC-------RSREFEAQVLEIDYKPRSEYREMEACN 236

Query: 387 L---MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           L   ++  + + S+DS  +IF  + ++DLVSWNTI+ G  +NG   ETL +  E+    L
Sbjct: 237 LGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANL 296

Query: 444 PPDRITLAAVL 454
            PD  TL++VL
Sbjct: 297 KPDSFTLSSVL 307



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 74/143 (51%), Gaps = 6/143 (4%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           A +   S S+ S ++  C    +    K +HG++ + GF+ + ++ +  +D+Y++ G   
Sbjct: 395 AKIKPKSYSF-SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIR 453

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYA 123
              Q+FD +  ++ +SW   + G     +   A+++F+++     EP+ V++ ++++  +
Sbjct: 454 TARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACS 513

Query: 124 SCGYSDYALEMFSKMQLQ-GVRP 145
             G  D A + F+ M L  G+ P
Sbjct: 514 HAGLVDEAWKYFNSMTLDFGIAP 536


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/614 (29%), Positives = 313/614 (50%), Gaps = 56/614 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   K   F +++HG + +LG     Y  N  +++YS+F +      L +   Q+ 
Sbjct: 16  VLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS------LEEGGVQRF 69

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS-DYALEMFSKMQ 139
           C S                  K+   IPEP  +           C  S D   E+  +  
Sbjct: 70  CDS------------------KMLGGIPEPREI---------GKCSNSHDLPCELDER-- 100

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           + G+  +G      L+ +S+  +    +  +   G +           D+Y K     Y 
Sbjct: 101 VAGIDQNGD-----LNQMSNILYQVNTYKKVFDEGKT----------SDVYSKKEKESYY 145

Query: 200 FG----VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            G    VF  M + DI+SWN++ISG   +G  E AL     M  +   PD +T+S V+  
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
             +  NL KGK++   +++ G+ ++  + S+ ID+++KC R++DS R+F  L + D    
Sbjct: 206 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 265

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIK 374
           N +I+   + G  +  L+ FQ ML   I+P   + S ++ +       H G Q H   I+
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S FD N  +AS+L++MYAK G+I ++  IF K++  D+VSW  ++MG   +G A + + +
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+ +  EG+ P+ +   AVL AC++ G VD+    F++M ++Y ++PG EHYA + DLL 
Sbjct: 386 FKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLG 445

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G+L +A +  S M  +P  S+W ++L A  ++ +++L E V++++  +   +   Y L
Sbjct: 446 RVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVL 505

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  Y+  GRW+   +++  MR  G+ K   CSWI IKN+++ F AG+  H    +I   
Sbjct: 506 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEA 565

Query: 615 LRLLTWEMEDEGCV 628
           L++L  +ME EG V
Sbjct: 566 LKVLLEQMEREGYV 579



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 35/207 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    +    K +HG++ +  F+ + ++ +  +D+Y++ G              
Sbjct: 301 SSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCG-------------- 346

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            N+ TA  +FD++   D+VSW +MI GYA  G++  A+ +F +M
Sbjct: 347 -----------------NIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +++GV+P+   F  +L+  S A       +   SM +    +  +    ++ D+ G++G 
Sbjct: 390 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 449

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGC 221
           L  A+    +M  E     W++L++ C
Sbjct: 450 LEEAYEFISDMHIEPTGSVWSTLLAAC 476


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/614 (28%), Positives = 317/614 (51%), Gaps = 41/614 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S+L+    S K FD  + +HG + K G+  + Y+G+  +D+Y+                 
Sbjct: 105 SRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYA----------------- 147

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K + ++ A + F EI EP+ VSWN++I+G+        A  +   M
Sbjct: 148 --------------KCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLM 193

Query: 139 QLQG-VRPSGFTFSILLSTVSSA--CHG-KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +++  V     TF+ LL+ +     C+  KQ+H  +++ GL    + + N++I  Y   G
Sbjct: 194 EMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQ-HEITICNAMISSYADCG 252

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            +  A  VF  +    D+ISWNS+I+G       E A + F  M+      D YT + ++
Sbjct: 253 SVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLL 312

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK--CNRLEDSVRLFEQLDRWD 311
           +AC+   +   GK +  + +K G    +   +A I ++ +     +ED++ LFE L   D
Sbjct: 313 SACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKD 372

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               N +I+ + + G  E A++ F  +   +I+  ++  S +L S   +  ++ G Q H+
Sbjct: 373 LISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHA 432

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAA 429
           +A KSGF SN  V SSL+ MY+K G I+S+ + F ++  K   V+WN +++G  Q+G   
Sbjct: 433 LATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQ 492

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
            +LD+F ++  + +  D +T  A+L AC++ G + +G+ + + M+  Y + P  EHYA  
Sbjct: 493 VSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAA 552

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG + KA ++  +MP  P   + ++ L      G++++   VA  +++++    
Sbjct: 553 VDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDH 612

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y  L+  Y+   +WE    VKK+M++ G+ KV G SWI I+N++  FNA +  +   Q
Sbjct: 613 FTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQ 672

Query: 610 KIYLVLRLLTWEME 623
            IY++++ LT EM+
Sbjct: 673 DIYMMIKDLTQEMQ 686



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 231/506 (45%), Gaps = 53/506 (10%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H +  K G  +  Y+ NR LD Y +FG                                L
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGF-------------------------------L 51

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
             A  +FDE+P+ D VSWN+MISGY SCG  + A  +F+ M+  G    G++FS LL  +
Sbjct: 52  GYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGI 111

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +S      G+Q+HG +I+ G    NV +G+SL+DMY K   +  AF  F  + E + +SW
Sbjct: 112 ASVKRFDLGEQVHGLVIKGGYE-CNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSW 170

Query: 215 NSLISGC-----FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           N+LI+G        + +  L L +      +  + D  T + ++         +  KQV 
Sbjct: 171 NALIAGFVQVRDIKTAFWLLGLMEM----KAAVTMDAGTFAPLLTLLDDPMFCNLLKQVH 226

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFG 328
           A  +K+G      + +A I  ++ C  + D+ R+F+ L    D    N MI+ + ++   
Sbjct: 227 AKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELK 286

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH---GSQFHSMAIKSGFDSNAVVAS 385
           E A ELF  M R  +    +T + +LS+      EH   G   H M IK G +      +
Sbjct: 287 ESAFELFIQMQRHWVETDIYTYTGLLSA--CSGEEHQIFGKSLHGMVIKKGLEQVTSATN 344

Query: 386 SLMEMYAK--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           +L+ MY +  TG+++ +  +F  L  +DL+SWN+I+ G  Q G + + +  F  L    +
Sbjct: 345 ALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEI 404

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
             D    +A+L +C+    +  G  +  A+  + G +  E   + +I +  + G +  A 
Sbjct: 405 KVDDYAFSALLRSCSDLATLQLGQQI-HALATKSGFVSNEFVISSLIVMYSKCGIIESAR 463

Query: 504 DITSTMPFQPGCSIWESILRASAIYG 529
                +  +     W +++   A +G
Sbjct: 464 KCFQQISSKHSTVAWNAMILGYAQHG 489


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/599 (29%), Positives = 303/599 (50%), Gaps = 33/599 (5%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
           + + IHG + K+GF++   + N  L +Y+  G S++   +F ++P K+ ISWN  +   +
Sbjct: 380 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFV 439

Query: 93  KSDNLDTALKVF-DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                  AL +    I     V++ +  S  A+C    ++ E F K              
Sbjct: 440 NDGRSLDALGILCSMIRTGKSVNYVTFTSALAAC----FSPEFFDK-------------- 481

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                      G+ +HG ++ SGL   N ++GN+L+ MYGK+G +  +  V L M   D+
Sbjct: 482 -----------GRILHGLVVVSGL-FDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDV 529

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN-LDKGKQVFA 270
           ++WN+LI G   +   + AL  F ++R  G S +  T+  V++AC    + L++GK + A
Sbjct: 530 VAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHA 589

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             V  GF S+  V ++ I +++KC  L  S  LF  LD       N +++    +G GE 
Sbjct: 590 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEE 649

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            L+L   M    +   +F+ S  LS+   +  +E G Q H +A+K GF+ +  + ++  +
Sbjct: 650 VLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAAD 709

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K G I    ++      R L SWN ++  L ++G   E  + F E+LE G+ P  +T
Sbjct: 710 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVT 769

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             ++L AC++GG VD+G+  +  + +++G+ P  EH  C+IDLL ++G+L +A    S M
Sbjct: 770 FVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 829

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +P   +W S+L +  I+ D+      AE +  L+      + L +  +A  GRWE + 
Sbjct: 830 PMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVE 889

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            V+K M    I K   CSW+ +K+++ +F  G+  H    +IY  L  +   +++ G V
Sbjct: 890 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV 948



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 209/406 (51%), Gaps = 25/406 (6%)

Query: 86  ICLRGLLKSDNLDT---------------ALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           +C++GL++   L T               A  +FD++P  + VSWN+M+SG    G    
Sbjct: 83  LCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLE 142

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC----HGKQIHGSMIRSGLSLSNVVLGNSL 186
            +E F KM   G++PS F  + L++    +      G Q+HG + +SGL LS+V +  ++
Sbjct: 143 GMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGL-LSDVYVSTAI 201

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + +YG  G++  +  VF  M + +++SW SL+ G  + G  E  +D + SMR  G   +E
Sbjct: 202 LHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNE 261

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            ++S+VI++C  L++   G+Q+    +K G  S   V ++ I +F     ++ +  +F Q
Sbjct: 262 NSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQ 321

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-- 364
           +   D    N +++ Y + G  E +  +F LM R        T+S +LS   +  V+H  
Sbjct: 322 ISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLS--VLGDVDHQK 379

Query: 365 -GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G   H + +K GFDS   V ++L+ MYA  G  + +  +F ++  +DL+SWN++M    
Sbjct: 380 WGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFV 439

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
            +GR+ + L +   ++  G   + +T  + L AC    F DKG ++
Sbjct: 440 NDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRIL 485



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 188/376 (50%), Gaps = 6/376 (1%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N+D A  +F++I E D +SWNS+++ YA  G+ + +  +F+ M+      +  T S LLS
Sbjct: 311 NVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLS 370

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +    H   G+ IHG +++ G   S V + N+L+ MY   G    A  VF  M   D+I
Sbjct: 371 VLGDVDHQKWGRGIHGLVVKMGFD-SVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLI 429

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWNSL++   N G    AL    SM  +G S +  T +  + AC      DKG+ +  L 
Sbjct: 430 SWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLV 489

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V  G   N I+ +A + ++ K   +  S R+  Q+ R D    N +I  Y      + AL
Sbjct: 490 VVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKAL 549

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
             FQ +  E +     T+  VLS+  +P   +E G   H+  + +GF+S+  V +SL+ M
Sbjct: 550 AAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 609

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK G + SS ++F  LD R +++WN I+     +G   E L +  ++   GL  D+ + 
Sbjct: 610 YAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSF 669

Query: 451 AAVLLACNYGGFVDKG 466
           +  L A      +++G
Sbjct: 670 SEGLSAAAKLAVLEEG 685



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 241/498 (48%), Gaps = 39/498 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG + K G  +  Y+    L LY  +G      ++F+E+P +N                
Sbjct: 182 VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN---------------- 225

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                          VVSW S++ GY+  G  +  ++++  M+ +GV  +  + S+++S+
Sbjct: 226 ---------------VVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISS 270

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +     G+QI G +I+SGL  S + + NSLI M+G +G + YA  +F  + E D IS
Sbjct: 271 CGLLKDESLGRQIIGQVIKSGLE-SKLAVENSLISMFGNMGNVDYANYIFNQISERDTIS 329

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+++    +G+ E +   F  MR      +  T+S +++    + +   G+ +  L V
Sbjct: 330 WNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVV 389

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+GF S   V +  + +++   R E++  +F+Q+   D    N +++++   G    AL 
Sbjct: 390 KMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALG 449

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +   M+R        T +  L++   P   + G   H + + SG   N ++ ++L+ MY 
Sbjct: 450 ILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYG 509

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G + +S  + +++ +RD+V+WN ++ G  +N    + L  F+ L  EG+  + IT+ +
Sbjct: 510 KIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVS 569

Query: 453 VLLACNY-GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           VL AC   G  +++G  + + +    G    E     +I +  + G L  + D+ + +  
Sbjct: 570 VLSACLVPGDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN 628

Query: 512 QPGCSIWESILRASAIYG 529
           +   + W +IL A+A +G
Sbjct: 629 RSIIT-WNAILAANAHHG 645



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 198/430 (46%), Gaps = 55/430 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S + FD  + +HG +   G   +  +GN  + +Y + G      ++  ++P+++ ++W
Sbjct: 473 CFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAW 532

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               ++I GYA     D AL  F  ++++GV 
Sbjct: 533 N-------------------------------ALIGGYAENEDPDKALAAFQTLRVEGVS 561

Query: 145 PSGFTFSILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +  T    + +V SAC         GK +H  ++ +G   S+  + NSLI MY K G L
Sbjct: 562 ANYIT----VVSVLSACLVPGDLLERGKPLHAYIVSAGFE-SDEHVKNSLITMYAKCGDL 616

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  ++   II+WN++++   + G+GE  L     MR  G S D+++ S  ++A 
Sbjct: 617 SSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAA 676

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            KL  L++G+Q+  L+VK+GF  +  + +A  D++SKC  + + V++            N
Sbjct: 677 AKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWN 736

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS 375
           ++IS  GR+G+ E   E F  ML   I+P   T   +L++      V+ G  ++ M  K 
Sbjct: 737 ILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKD 796

Query: 376 -GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNTIMMG------LTQNG 426
            G +        ++++  ++G +  +     K+  +  DLV W +++        L +  
Sbjct: 797 FGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHRDLDRGR 855

Query: 427 RAAETLDVFE 436
           +AAE L   E
Sbjct: 856 KAAENLSKLE 865



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 107/196 (54%), Gaps = 4/196 (2%)

Query: 265 GKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           G+ + AL VK G +  S++ + T I++++K  R++ +  LF+++   +    N M+S   
Sbjct: 77  GRALHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIV 135

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNA 381
           R G     +E FQ M    I+P+ F ++ ++++          G Q H    KSG  S+ 
Sbjct: 136 RVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 195

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V+++++ +Y   G +  S ++F ++  R++VSW ++M+G +  G   E +D+++ +  E
Sbjct: 196 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGE 255

Query: 442 GLPPDRITLAAVLLAC 457
           G+  +  +++ V+ +C
Sbjct: 256 GVECNENSMSLVISSC 271



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 35/216 (16%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H++ +K     + +  ++L+ MY K G +  +  +F K+  R+ VSWNT+M G+ +
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
            G   E ++ F+++ + G+ P    +A+++ AC   G         S  +E  GV     
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSG---------SMFRE--GVQ---- 181

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
               +   + ++G L      T             +IL    +YG V  +  V E M D 
Sbjct: 182 ----VHGFVAKSGLLSDVYVST-------------AILHLYGVYGLVSCSRKVFEEMPDR 224

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
            + S   ++ L   Y+ +G  E ++ + K MR  G+
Sbjct: 225 NVVS---WTSLMVGYSDKGEPEEVIDIYKSMRGEGV 257


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 190/590 (32%), Positives = 308/590 (52%), Gaps = 44/590 (7%)

Query: 82  ISWNICLRGLLKS-DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           IS  I    LL S D LD +  +F +I  P++  WN+MI GY+       A+ ++  M  
Sbjct: 44  ISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIA 103

Query: 141 QGVRP-SGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           +G+ P + FTF  LL++   +SS   G ++H  +I+ G   S++ + N+LI +Y   G L
Sbjct: 104 KGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFE-SDLFVRNALIHLYSVFGNL 162

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F      D++S+N++I G       E AL  F  M+ SG  PDE+T   + + C
Sbjct: 163 NLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVC 222

Query: 257 TKLRNLDKGKQVFALSVK--VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR----- 309
           + L   + GKQ+ A   K      SN ++ SA +D+++KC  +  + R+F  +       
Sbjct: 223 SVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAA 282

Query: 310 -WDYAV--------INV------------------MISTYGRYGFGEVALELFQLMLRED 342
            W   V        INV                  MIS Y + G    ALELF+ M    
Sbjct: 283 AWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALG 342

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-FDSNAVVASSLMEMYAKTGSIDSS 400
           I+P E TL  VLS+   +   + G + +   I++G F+ N ++ +++M+MYAK GSIDS+
Sbjct: 343 IKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSA 402

Query: 401 TEIFVKLDK--RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            EIF ++ K  +    +N+++ GL Q+G     + VF EL+  GL PD +T   VL AC 
Sbjct: 403 LEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACG 462

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           + G +++G  +F +M   YG+ P  EHY C++DLL + G L +A D+   MPF+    IW
Sbjct: 463 HSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIW 522

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            ++L A   +G+VK+ E   +++++++      Y LL+   A   +WE   +V+KVM  +
Sbjct: 523 RALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDH 582

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           GI K  G S+I +   I+ F A +  H  G++I L+L+ +   ++  G V
Sbjct: 583 GIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 632


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/616 (28%), Positives = 311/616 (50%), Gaps = 41/616 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  I  C+   S    + +H  +   GF++ T++    L +Y++ G   D          
Sbjct: 168 SAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGD---------- 217

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                + KVF+ +   + VSWN+MISG+ S G    A   F +M
Sbjct: 218 ---------------------SCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRM 256

Query: 139 QLQGVRPSGFTF---SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             + +RP+   F   S  +  +     G+ I+      G+  SN+ +G +LIDM+ K G 
Sbjct: 257 LGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQ-SNIHVGTALIDMFAKCGC 315

Query: 196 LYYAFGVFL-NMEELDI-ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           +  ++ VF+ N     + + WN++ISG   SG+GE A+  F  M  +    D YT    +
Sbjct: 316 VTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTL 375

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           N+   +R+L+  KQ+  +  K G +  S+  +A +D ++KC  L+   +LF+  +  +  
Sbjct: 376 NSIADMRSLEYVKQLHGMIWKSGSIGVSLC-NALMDAYAKCGELDAMRKLFDTWEESNQI 434

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMA 372
               +++ Y +    E AL +F  M     +P + T S VL+S   +  +E+G Q HS+ 
Sbjct: 435 SWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLT 494

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            K+GF  +  V S L++MYAK GS+  + ++F  L   D++SW  ++ G  Q+G A + L
Sbjct: 495 CKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDAL 554

Query: 433 DVFEELLEEGLP-PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           ++F ++ E  LP P+  T   +L AC++GG VD+G+  F  M+E YG++P  EHYAC++D
Sbjct: 555 ELFRKM-ELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVD 613

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +L + G+L +A      MP +P   +W ++L A  ++G+++L +  A++++         
Sbjct: 614 ILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAA 673

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
             LL+  Y   G  E  + V+ +M+   + K TG SWI I  +I+ F +G+  H     I
Sbjct: 674 LVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQKDDI 733

Query: 612 YLVLRLLTWEMEDEGC 627
           Y  L +L  +++ + C
Sbjct: 734 YKTLNVLMEKVQGKKC 749



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 146/547 (26%), Positives = 261/547 (47%), Gaps = 51/547 (9%)

Query: 23  DRCLSFKSFDFAKTIHGHL--FKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +RCL       AK+IHG +  F+L   + T + N+ +  YS+        Q+FDEIPQK+
Sbjct: 74  ERCLKK-----AKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKS 128

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             SW + + G  ++      +  F EI   D+V               +YAL    +  +
Sbjct: 129 VFSWTVLMVGATENGFYRDGIDYFVEILGCDIVP-------------DEYALSAAIQACI 175

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
                           V S   G+ +H  +I  G S S   +  SL+ MY KLG +  + 
Sbjct: 176 ---------------GVDSIVVGEMVHAQVITRGFS-SRTFVNTSLLGMYAKLGRIGDSC 219

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF ++E  + +SWN++ISG  ++G    A + F  M      P+      V  A  +L 
Sbjct: 220 KVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLG 279

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV--- 317
           +++KG+ +  ++ ++G  SN  V +A ID+F+KC  + +S  +F  +  +    +N+   
Sbjct: 280 DVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVF--VSNFSGCGVNLPWN 337

Query: 318 -MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            MIS +   G GE A+ LF  M + +I+   +T    L+SI  +  +E+  Q H M  KS
Sbjct: 338 AMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKS 397

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G      + ++LM+ YAK G +D+  ++F   ++ + +SW T++   +Q+    + L VF
Sbjct: 398 G-SIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVF 456

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            ++ E G  P+++T + VL +C     ++ G  V S +  + G    +   + +ID+  +
Sbjct: 457 SQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHS-LTCKTGFARDKCVESVLIDMYAK 515

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE--RMMDLQLPSPLPYS 553
            G +  AI +  ++   P    W +++   A +G   + ++  E  R M+L LP+P   +
Sbjct: 516 CGSVRDAIKVFESLK-DPDVISWTAMISGYAQHG---MAKDALELFRKMELVLPNPNSAT 571

Query: 554 LLTQAYA 560
            L   +A
Sbjct: 572 FLCLLFA 578



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 38/303 (12%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           ++ +   +YCS L +     +S ++ K +HG ++K G +    L N  +D Y++ G  D 
Sbjct: 363 NIKRDVYTYCSTL-NSIADMRSLEYVKQLHGMIWKSG-SIGVSLCNALMDAYAKCGELDA 420

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
           + +LFD   + N ISW   +    +S   + AL V                         
Sbjct: 421 MRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSV------------------------- 455

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNS 185
                 FS+M+  G +P+  TFS +L++ +S C   +G+Q+H    ++G +    V  + 
Sbjct: 456 ------FSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCV-ESV 508

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LIDMY K G +  A  VF ++++ D+ISW ++ISG    G  + AL+ F  M     +P+
Sbjct: 509 LIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPN 568

Query: 246 EYTISIVINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
             T   ++ AC+    +D+G + F L   + G +      +  +D+  +  RL ++ +  
Sbjct: 569 SATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFI 628

Query: 305 EQL 307
            ++
Sbjct: 629 MKM 631


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/626 (27%), Positives = 308/626 (49%), Gaps = 50/626 (7%)

Query: 21  LIDRCLS--FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++D C+     S +  + IHG +   G     ++    +D Y + G+ DD  ++F     
Sbjct: 252 VLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF----- 306

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                 L+  DE P   +V+ ++MIS     G+   +L +F  M
Sbjct: 307 ----------------------LRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAM 344

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGS---MIRSGLSLSNV----VLGNSLIDMYG 191
            L+G +PSG T    L +V +AC   Q+  +   ++   + + +     VLG +L+  Y 
Sbjct: 345 NLEGTKPSGVT----LVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYA 400

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           +   L  A   F  ++  D++SWN++ +          AL  F  M   G  P   T   
Sbjct: 401 RSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFIT 460

Query: 252 VINACTKLRNLDK---GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            + AC           GK++ +L  + G   ++ V +AT+++++KC  L D+  +FE++ 
Sbjct: 461 ALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERIS 520

Query: 309 --RWDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVL-SSIPIPPVEH 364
             R D    N M++ YG +G G+ A ELFQ M  E  ++P + T   VL +S     +  
Sbjct: 521 PARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQ 580

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL--DKRDLVSWNTIMMGL 422
           G + H+  + +GF+S+ V+ ++L+ MYAK GS+D +  IF K   ++ D+++W +++ G 
Sbjct: 581 GREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGY 640

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            Q G+A   L +F  + ++G+ P+ +T  + L ACN+GG +++G  + S M  ++G++P 
Sbjct: 641 AQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPA 700

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            +H++CI+DLL + G+L +A  +      Q     W ++L A     +++  E  AER+M
Sbjct: 701 SKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIM 759

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
            L       Y +L   YA  GRW     ++K M   GI    GCS + +   +++F+AG+
Sbjct: 760 QLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGD 819

Query: 603 LQHHGGQKIYLVLRLLTWEMEDEGCV 628
             H   ++IYL L  L W ++  G V
Sbjct: 820 KSHPKSEEIYLELERLHWSIKAAGYV 845



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 221/466 (47%), Gaps = 51/466 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP--- 77
           L++ C    +    + IH  +    F  ++ LGN  + +YS+ G+  D  Q FD +P   
Sbjct: 147 LVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRAS 206

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVF-----DEIPEPDVVSWNSMISGYASCGYSDYAL 132
           +++ ++WN  +   L++ +   AL++F     D  P P+ V++ S++      G      
Sbjct: 207 KRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGL----- 261

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
                + L+ VR                     IHG ++ +G+     V   +L+D YGK
Sbjct: 262 -----LSLEDVRA--------------------IHGRIVGAGIEREAFVR-TALVDSYGK 295

Query: 193 LGVLYYAFGVFLNM--EE--LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           LG L  A+ VFL    EE    +++ +++IS C+ +G+ + +L  F++M   G  P   T
Sbjct: 296 LGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVT 355

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQL 307
           +  V+NAC+ L+       V   +++V   +   VL  T +  +++ N L  +   F+ +
Sbjct: 356 LVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAI 415

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH--- 364
              D    N M + Y ++     AL LF+ ML E +RP+  T    L++    P +    
Sbjct: 416 QSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASA 475

Query: 365 -GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMG 421
            G +  S+  ++G + +  VA++ + MYAK GS+  +  +F ++   +RD ++WN+++  
Sbjct: 476 IGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAA 535

Query: 422 LTQNGRAAETLDVFEELLEEGL-PPDRITLAAVLLACNYGGFVDKG 466
              +G   E  ++F+ +  E L  P+++T  AVL A      + +G
Sbjct: 536 YGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG 581



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 160/333 (48%), Gaps = 24/333 (7%)

Query: 162 HGKQIHGSMIRSGLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
            G+++H  ++   + L N   L + LI M+ K G L  A  +        + S  ++I  
Sbjct: 61  QGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFA--SVYSCTAMIRA 118

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
               G  + A++ F  M      P+ + +  ++NAC+ L NL  G+++ +      F  N
Sbjct: 119 WMEHGRPDKAMELFDRMEVR---PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEEN 175

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQL 337
           S++ +A I ++SKC  L D+ + F++L R    D    N MIS + R G    AL+LF+ 
Sbjct: 176 SVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRD 235

Query: 338 MLREDI-RPTEFTLSCVLSS---IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           M R+    P   T   VL S     +  +E     H   + +G +  A V ++L++ Y K
Sbjct: 236 MDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGK 295

Query: 394 TGSIDSSTEIFVKLDKRD----LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            GS+D + E+F++    +    LV+ + ++    QNG   E+L +F  +  EG  P  +T
Sbjct: 296 LGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVT 355

Query: 450 LAAVLLACNY------GGFV-DKGMLVFSAMKE 475
           L +VL AC+         FV ++ M V SA ++
Sbjct: 356 LVSVLNACSMLQVGSATAFVLEQAMEVVSATRD 388



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 130/245 (53%), Gaps = 23/245 (9%)

Query: 248 TISIVINACTKLRNLDKGKQVFA--LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           T   ++ AC +LR L +G+++ A  LS ++   ++S + S  I + +KC  L ++  L +
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 306 QLDRWDYAVI---NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPP 361
           +     +A +     MI  +  +G  + A+ELF  M   ++RP    L  ++++   +  
Sbjct: 105 R-----FASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGN 156

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL---DKRDLVSWNTI 418
           +  G + HS      F+ N+V+ ++L+ MY+K GS+  + + F +L    KRD+V+WN +
Sbjct: 157 LAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAM 216

Query: 419 MMGLTQNGRAAETLDVFEELLEEGL-PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           +    +NG A E L +F ++  +G  PP+ +T  +VL +C     V+ G+L    ++  +
Sbjct: 217 ISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSC-----VEAGLLSLEDVRAIH 271

Query: 478 GVMPG 482
           G + G
Sbjct: 272 GRIVG 276


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 186/595 (31%), Positives = 295/595 (49%), Gaps = 36/595 (6%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           T+H  + KLGF A   + N  LD Y                          C +G + + 
Sbjct: 154 TLHPVVTKLGFGASVVVCNTLLDAY--------------------------CKQGFIAA- 186

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
               A +VF E+P  D +++N+MI G +  G    ALE+F+ M+ +GV  S FTFS LL+
Sbjct: 187 ----ARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLT 242

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +       G+QIHG  +R+  S  NV + N+L+D Y K   L     +F  M E D +
Sbjct: 243 VATGMVDLHLGRQIHGLFVRANPS-CNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNV 301

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           S+N +IS C  +  G +AL  F  M+  G+       + +++    L ++  G+Q+ A  
Sbjct: 302 SYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQL 361

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +  G      V +A ID++SKC  L+ +  +F             +I+   + G  E AL
Sbjct: 362 ILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEAL 421

Query: 333 ELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF  M R  + P   T  S + SS  +  +  G Q H+   KSG   +    S+L++MY
Sbjct: 422 QLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMY 481

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +D +   F ++ +++ ++WN ++    Q G+A   + +F+ +L  GL PD +T  
Sbjct: 482 AKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFL 541

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +VL AC + G  ++ M  F  M+  Y + P +EHY+C+ID L +AG   K   +   MPF
Sbjct: 542 SVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEMPF 601

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +    IW SIL +  IYG+  L    AE++  +       Y +L+  YA  G WE   RV
Sbjct: 602 EDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMVPTDATAYVILSNIYAKAGNWEGAARV 661

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           KK+MR  G+ K +G SW+ IK +IY F++ +  +    +I   L  L  EM+ +G
Sbjct: 662 KKIMRDRGVKKESGNSWVEIKQKIYMFSSNDHTNPMIDEIKKELERLYEEMDKQG 716



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 145/544 (26%), Positives = 254/544 (46%), Gaps = 11/544 (2%)

Query: 39  GHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW---NICLRGLLKSD 95
             + K G +  TY     L+     G      ++ D++P+K+ +     N  L G  +S 
Sbjct: 26  ARMVKAGSDPATYRLELHLNYLVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSC 85

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILL 154
           +L  A  +F      +  +W  M+    + G    A+ +F  M  +G   P   T + +L
Sbjct: 86  DLSAAKALFSAAARRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL 145

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +     C    +H  + + G   S VV+ N+L+D Y K G +  A  VFL M   D I++
Sbjct: 146 NV--PGCDVGTLHPVVTKLGFGAS-VVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITY 202

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++I GC   G    AL+ F +MR  G     +T S ++   T + +L  G+Q+  L V+
Sbjct: 203 NAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVR 262

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
                N  V +A +D +SKC+ L D  +LF+++   D    NVMIS       G +AL+L
Sbjct: 263 ANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQL 322

Query: 335 FQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F+ M            + +LS +  +P ++ G Q H+  I  G      V ++L++MY+K
Sbjct: 323 FRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSK 382

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G +D++  IF     +  +SW  ++ G  QNG+  E L +F ++   GL PDR T +++
Sbjct: 383 CGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSI 442

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           + + +    +  G  + + + +  G MP     + ++D+  + G L +AI   + MP + 
Sbjct: 443 MKSSSSLAVIGIGRQLHAYLTKS-GHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMP-EK 500

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVK 572
               W +++ A A YG  K    + + M+   L P P+ +  +  A    G  E  ++  
Sbjct: 501 NSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYF 560

Query: 573 KVMR 576
            +MR
Sbjct: 561 DLMR 564



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 173/355 (48%), Gaps = 36/355 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++  V+ +  ++ S L+            + IHG   +   + + ++ N  LD YS+  
Sbjct: 225 MRREGVDTSHFTF-SSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCD 283

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +  D+ QLFDE+ +++ +S+N+ +                         SWN        
Sbjct: 284 SLGDLKQLFDEMSERDNVSYNVMI----------------------SACSWN-------R 314

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
           CG    AL++F  MQ  G       ++ LLS   +  H   G+QIH  +I  GL+L + V
Sbjct: 315 CG--GMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFV 372

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
            GN+LIDMY K G+L  A  +F    +   ISW +LI+GC  +G  E AL  F  MR +G
Sbjct: 373 -GNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAG 431

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            SPD  T S ++ + + L  +  G+Q+ A   K G + +    SA +D+++KC  L++++
Sbjct: 432 LSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAI 491

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           R F ++   +    N +IS Y +YG  + A+ +F  ML   + P   T   VL++
Sbjct: 492 RTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAA 546



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 144/357 (40%), Gaps = 50/357 (14%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           ++ +L Y S L+    +       + IH  L   G     ++GN  +D+YS+ G  D   
Sbjct: 332 DRRTLPYAS-LLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAK 390

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +F     K  ISW                                ++I+G    G ++ 
Sbjct: 391 TIFAYKSDKTAISW-------------------------------TALITGCVQNGQNEE 419

Query: 131 ALEMFSKMQLQGVRPSGFT---FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL++F  M+  G+ P   T        S+++    G+Q+H  + +SG  + +V  G++L+
Sbjct: 420 ALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSG-HMPSVFSGSALL 478

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G L  A   F  M E + I+WN++IS     G  + A+  F SM + G  PD  
Sbjct: 479 DMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPV 538

Query: 248 TISIVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           T   V+ AC         ++  D  +  +++S      S  I        F K  ++ D 
Sbjct: 539 TFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDE 598

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           +   +    W   + +  I  YG      VA E    M+     PT+ T   +LS+I
Sbjct: 599 MPFEDDPIIWSSILHSCRI--YGNQDLATVAAEKLFTMV-----PTDATAYVILSNI 648


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 177/625 (28%), Positives = 310/625 (49%), Gaps = 48/625 (7%)

Query: 21  LIDRCLSFKSFD--FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           LI  C   K+FD      +HG + K GF  +  L N  + LYS+ G   +V QLF+++  
Sbjct: 139 LIHACC--KNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTH 196

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ ISWN  +   +       AL +FDE+      PD ++  S++S  A        LEM
Sbjct: 197 RDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLK----DLEM 252

Query: 135 FSKMQLQGVRPS----GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
             ++ L  V       G   + L+   S      + HG + R   S  +VVL  +L+  Y
Sbjct: 253 GKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGY 312

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K   +  A  +F  M E  ++SW +++SG    GY   +L+ F  MR+    PDE  + 
Sbjct: 313 VKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALV 372

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-- 308
            V++AC  L + D G+ V A  V  G L +  + +A +DL++KC +L++++R FEQL   
Sbjct: 373 TVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432

Query: 309 ---RW--------------------------DYAVINVMISTYGRYGFGEVALELFQLML 339
               W                          D    N M++ Y ++     + E+F  M 
Sbjct: 433 SAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ 492

Query: 340 REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
             +++P + TL  +LSS   +  + HG   +    K+    +A++ ++L++MY K G ++
Sbjct: 493 SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVE 552

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            + EIF ++ ++++  W  +M      G+A E +D++ E+ E G+ PD +T  A+L AC+
Sbjct: 553 MAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACS 612

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           +GG VD+G   F+ ++  Y ++P   HY C++DLL + G L + +     MP +P  SIW
Sbjct: 613 HGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIW 672

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            S++RA   + +V+L E   ++++++   +   + LL+  YA  GRW+ + +V+  + + 
Sbjct: 673 SSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHET 732

Query: 579 GINKVTGCSWIGIKNRIYTFNAGEL 603
           G+ K  G + I     ++ F A  L
Sbjct: 733 GVPKQPGFTMIEQNGVVHEFVASNL 757



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 233/513 (45%), Gaps = 83/513 (16%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           LL  +NLD A ++     EP+ + WN+++      G     LE +  M  QGV     TF
Sbjct: 77  LLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTF 136

Query: 151 SILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             L   + + C       G ++HG +++ G    N  L N+L+ +Y K G L     +F 
Sbjct: 137 HFL---IHACCKNFDVKLGSEVHGRILKCGFG-RNKSLNNNLMGLYSKCGKLKEVCQLFE 192

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M   D+ISWN++IS     G    ALD F  M  SG  PDE T+  +++ C KL++L+ 
Sbjct: 193 KMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEM 252

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKC------------------------------ 294
           GK++    V         +L+  +D++SKC                              
Sbjct: 253 GKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGY 312

Query: 295 ---NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
              N+++ + +LF++++         M+S Y + G+   +LELFQ M  E++ P E  L 
Sbjct: 313 VKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALV 372

Query: 352 CVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK----------------- 393
            VLS+ + +   + G   H+  +  G   +  + ++L+++YAK                 
Sbjct: 373 TVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCK 432

Query: 394 --------------TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
                         +G +D + + F K+ ++D+VSWNT++    ++    E+ ++F ++ 
Sbjct: 433 SAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ 492

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM-KEEYGV--MPGEEHYACIIDLLCQA 496
              + PD+ TL ++L +C   G ++ G+ V   + K E G+  M G      +ID+  + 
Sbjct: 493 SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG----TALIDMYGKC 548

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           G +  A +I + +  +    +W +++ A A+ G
Sbjct: 549 GCVEMAYEIFTQI-IEKNVFVWTAMMAAYAMEG 580



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 184/404 (45%), Gaps = 37/404 (9%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           LL + S+      IH  +I + L + +  + + ++     +  L  A  +     E + I
Sbjct: 41  LLKSCSNIREFSPIHAHLITANL-IHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESI 99

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WN+L+      G  +  L+ +Y M   G   D  T   +I+AC K  ++  G +V    
Sbjct: 100 IWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRI 159

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K GF  N  + +  + L+SKC +L++  +LFE++   D    N MIS Y   G    AL
Sbjct: 160 LKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREAL 219

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH-------------------SMA 372
           +LF  ML   + P E T+  ++S+   +  +E G + H                    M 
Sbjct: 220 DLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMY 279

Query: 373 IKSG--------------FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            K G               + + V+ ++L+  Y K+  ID + ++F K+++R LVSW T+
Sbjct: 280 SKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTM 339

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           M G  Q G   E+L++F+++  E + PD + L  VL AC +    D G  V  A    YG
Sbjct: 340 MSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV-HAFIVTYG 398

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           ++        ++DL  + G+L +A+     +P +   S W S+L
Sbjct: 399 MLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAAS-WNSML 441


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/600 (28%), Positives = 305/600 (50%), Gaps = 42/600 (7%)

Query: 28  FKSFDFAKT---IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           F S D A+    +H  + KLG++++ ++G   ++ YS  G+                   
Sbjct: 156 FVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGS------------------- 196

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       +D+A  VF+ I   D+V W  ++S Y   G  + +L++ S+M + G  
Sbjct: 197 ------------VDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFM 244

Query: 145 PSGFTFSILL--STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ +TF   L  S    A H  K +HG ++++   L   V G  L+ +Y +LG +  AF 
Sbjct: 245 PNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRV-GVGLLQLYTQLGDMSDAFK 303

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M + D++ W+ +I+    +G+   A+D F  MR     P+E+T+S ++N C   + 
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKC 363

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G+Q+  L VKVGF  +  V +A ID+++KC +++ +V+LF +L   +    N +I  
Sbjct: 364 SGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVG 423

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y   G G  AL +F+  LR  +  TE T S  L +   +  +E G Q H +AIK+     
Sbjct: 424 YENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKR 483

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V++SL++MYAK G I  +  +F +++  D+ SWN ++ G + +G   + L +F+ +  
Sbjct: 484 VAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKG 543

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
               P+ +T   VL  C+  G +D+G   F +M  ++G+ P  EHY C++ L  ++GQL 
Sbjct: 544 SDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLD 603

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           KA+++   +P++P   IW ++L AS    + +     AE ++ +       Y LL+  YA
Sbjct: 604 KAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYA 663

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
              +W  +  ++K M++ G+ K  G SWI  +  ++ F+ G   H     + L+  +L W
Sbjct: 664 GAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDH---PDMKLINGMLEW 720



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 136/575 (23%), Positives = 253/575 (44%), Gaps = 77/575 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++ RC+       AK IH  + K G          CLDL++                   
Sbjct: 55  MLRRCIRKNDSVSAKAIHCDILKKG---------SCLDLFAT------------------ 87

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
               NI L   +K+     AL +FDE+PE + VS+ ++  GYA        + ++S++  
Sbjct: 88  ----NILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYAC----QDPVGLYSRLHR 139

Query: 141 QG--VRPSGFT-FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G  + P  FT F  L  ++  A     +H  +++ G   SN  +G +LI+ Y   G + 
Sbjct: 140 EGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYD-SNAFVGAALINAYSVCGSVD 198

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   DI+ W  ++S    +G  E +L     M   G+ P+ YT    + A  
Sbjct: 199 SARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASI 258

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L      K V    +K  +  +  V    + L+++   + D+ ++F ++ + D    + 
Sbjct: 259 GLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSF 318

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSG 376
           MI+ + + GF   A+++F  M    + P EFTLS +L+   I      G Q H + +K G
Sbjct: 319 MIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVG 378

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FD +  V+++L+++YAK   +D++ ++F +L  +++VSWNT+++G    G   + L++F 
Sbjct: 379 FDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFR 438

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E L   +    +T ++ L AC     ++ G+ V                           
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMELGVQVH-------------------------- 472

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
              G AI   +        ++  S++   A  GD+K+ + V   M  + + S   ++ L 
Sbjct: 473 ---GLAIKTNNAKRV----AVSNSLIDMYAKCGDIKVAQTVFNEMETIDVAS---WNALI 522

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
             Y+  G     +R+  +M+ +   K  G +++G+
Sbjct: 523 SGYSTHGLGRQALRIFDIMKGSDC-KPNGLTFLGV 556



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 132/291 (45%), Gaps = 36/291 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   K     + +HG + K+GF+   Y+ N  +D+Y++    D  ++LF E+  
Sbjct: 352 SSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSS 411

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +SW                               N++I GY + G    AL MF + 
Sbjct: 412 KNVVSW-------------------------------NTVIVGYENLGEGGKALNMFREA 440

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V  +  TFS  L   +S      G Q+HG  I++  +   V + NSLIDMY K G 
Sbjct: 441 LRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTN-NAKRVAVSNSLIDMYAKCGD 499

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  ME +D+ SWN+LISG    G G  AL  F  M+ S   P+  T   V++ 
Sbjct: 500 IKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSG 559

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           C+    +D+G+  F ++    G        +  + LF +  +L+ ++ L E
Sbjct: 560 CSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIE 610


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/562 (29%), Positives = 296/562 (52%), Gaps = 40/562 (7%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +HG+  K+GF++  ++    + +Y + G                             
Sbjct: 165 GKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGI---------------------------- 196

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              LD A   FD+I   D+V+WN+MI+GYA   Y + A+E+F +M+L+G +P+  TF  +
Sbjct: 197 ---LDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCV 253

Query: 154 L---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   + +S +  G+  H  +++ G S+ +V +  +L+DMY K   +      F  M + +
Sbjct: 254 LKASTAMSDSAVGRCFHAKVLKLGCSM-DVFVATALVDMYSKFYDIEDVERAFGEMSKRN 312

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++S+N+LI+G    G  E AL  +  ++  G  PD +T   + ++C+    + +G QV  
Sbjct: 313 LVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHV 372

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            SVK G  S+  V ++ ++ +SKC   + ++  FE ++R +      +IS + + G GE 
Sbjct: 373 HSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEK 432

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           AL  F  M +   +  EF+ S V+ ++     VE G   H+  +KSG D    V S++++
Sbjct: 433 ALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVID 492

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K G ++ + ++F  + ++++VSWN+++ G  QNG   E L +F+E+   G+ P  +T
Sbjct: 493 MYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVT 552

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL--GKAIDITS 507
              +L AC++ G V++G   ++ M   YG+ P  EH  C++DLL +AG L   +A  ++S
Sbjct: 553 FVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSS 612

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           +   +PG  IW S+L A  ++ +  +    A+  + L+      Y+ L+  YA +  W  
Sbjct: 613 SFSKEPG--IWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSE 670

Query: 568 IVRVKKVMRKNGINKVTGCSWI 589
           + R++ +M+  G+ K  GCSWI
Sbjct: 671 VSRIRDLMKDMGVEKEPGCSWI 692



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 249/534 (46%), Gaps = 43/534 (8%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A +   +++Y S  I  C        A ++H  + K GF+   ++ +  + +YS     
Sbjct: 34  RAGIEPNAITY-SATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYS----- 87

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
                                     K D +  A  +FD++PE D VSWNSMI+GY+  G
Sbjct: 88  --------------------------KHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRG 121

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSN 179
            ++ A  +F  M               L+TV  AC G       K +HG  ++ G   S+
Sbjct: 122 LNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFD-SD 180

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
           + +  S + MY K G+L  A   F  +E  DI++WN++I+G   + Y E A++ FY M  
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            G+ P++ T   V+ A T + +   G+   A  +K+G   +  V +A +D++SK   +ED
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIED 300

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
             R F ++ + +    N +I+ Y   G  E AL ++  +  E + P  FT   + SS  +
Sbjct: 301 VERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSV 360

Query: 360 PP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
              V  G+Q H  ++K G DS+  V +S++  Y+K G  DS+ E F  +++ + V W  I
Sbjct: 361 SSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGI 420

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G  QNG   + L  F ++ +     D  + ++V+ A +    V++G  + + + +  G
Sbjct: 421 ISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKS-G 479

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           +       + +ID+  + G +  A  + S MP +   S W S++   A  G  K
Sbjct: 480 LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVS-WNSMITGYAQNGFCK 532



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 189/369 (51%), Gaps = 9/369 (2%)

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQ 165
           E +VV W S I+  A  G  D AL  F +M   G+ P+  T+S  +S  + +        
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +H  +++ G S + + + + LI MY K   +  A  +F +M E D +SWNS+I+G    G
Sbjct: 63  LHCLILKKGFS-NQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRG 121

Query: 226 YGELALDQFYSMRYSGYS----PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             E A   F SM  S  +      ++T++ V+ AC  L     GK V   +VK+GF S+ 
Sbjct: 122 LNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDL 181

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V  +T+ ++ KC  L+ +   F+Q++  D    N MI+ Y +  + E A+ELF  M  E
Sbjct: 182 FVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELE 241

Query: 342 DIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
             +P + T  CVL +S  +     G  FH+  +K G   +  VA++L++MY+K   I+  
Sbjct: 242 GFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDV 301

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
              F ++ KR+LVS+N ++ G +  G+  E L V+ +L  EG+ PD  T   +  +C+  
Sbjct: 302 ERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVS 361

Query: 461 GFVDKGMLV 469
             V +G  V
Sbjct: 362 STVAEGAQV 370



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 5/256 (1%)

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M E +++ W S I+     G  + AL  F  M  +G  P+  T S  I+AC +       
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
             +  L +K GF +   V S  I ++SK +R++++  LF+ +   D    N MI+ Y + 
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 326 GFGEVALELFQLMLRE----DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSN 380
           G  E A  LF  M+       +  ++FTL+ VL +   +     G   H  A+K GFDS+
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V+ S + MY K G +D +   F +++ +D+V+WNT++ G  QN    E +++F ++  
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 441 EGLPPDRITLAAVLLA 456
           EG  P+  T   VL A
Sbjct: 241 EGFKPNDTTFCCVLKA 256



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 124/301 (41%), Gaps = 79/301 (26%)

Query: 1   MSSYLKKAHVNKASLSYCS--QLIDRCLSFKSFDFAKTI------------HGHLFKLGF 46
           +S + +     KA + +C   + ID+   F S    K +            H H+ K G 
Sbjct: 421 ISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGL 480

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           +   Y+G+  +D+YS+ G  +D  ++F  +P+KN +SW                      
Sbjct: 481 DCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSW---------------------- 518

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
                    NSMI+GYA  G+   AL +F +M   G+ P+  TF  +L   S        
Sbjct: 519 ---------NSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACS-------- 561

Query: 167 HGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGVLYYAFGVFLN---MEELDII 212
           H  ++  G +  N+++ N            ++D+ G+ G L  A    L+    +E  I 
Sbjct: 562 HAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGI- 620

Query: 213 SWNSLISGC---FNSGYGELA------LDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            W SL+S C    NS  G  A      L+  YS  Y+  S + Y    + +  +++R+L 
Sbjct: 621 -WGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALS-NIYASKELWSEVSRIRDLM 678

Query: 264 K 264
           K
Sbjct: 679 K 679


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 298/572 (52%), Gaps = 41/572 (7%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV----RPSGFTF 150
           D+ + A  VFD I   + +SWNS+IS Y+  G +  A ++FS MQ +G+    +P+   F
Sbjct: 252 DSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPND-AF 310

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           S           G+++H  +IR+GL+ + V +GN L++MY K G +  A  VF  M E D
Sbjct: 311 SEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKD 370

Query: 211 IISWNSLISG-----------------------CFNSGYGEL---------ALDQFYSMR 238
            +SWNSLISG                        +NS  G L         A+  F  M 
Sbjct: 371 SVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMM 430

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G+     T   +++A + L   +   Q+ AL +K     ++ + +A +  + KC  + 
Sbjct: 431 RGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMN 490

Query: 299 DSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           +  ++F ++ +  D    N MIS Y        A++L   M+++  R   FT + +LS+ 
Sbjct: 491 ECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSAC 550

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G + H+  I++  +S+ VV S+L++MY+K G ID ++  F  +  R++ SWN
Sbjct: 551 ASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWN 610

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           +++ G  ++G   + L +F  ++ +G PPD +T   VL AC++ GFV++G   F +M E 
Sbjct: 611 SMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEV 670

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA--SAIYGDVKLT 534
           Y + P  EH++C++DLL +AG+L +  D  ++MP +P   IW ++L A   A   + +L 
Sbjct: 671 YRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELG 730

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
              AE +++L+  + + Y LL   YA   +WE + + +  M++  + K  GCSW+ +K+ 
Sbjct: 731 RRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDG 790

Query: 595 IYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           ++ F AG+  H     IY  LR L  +M D G
Sbjct: 791 VHVFVAGDKLHPEKDLIYDKLRELNRKMRDAG 822



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 224/437 (51%), Gaps = 13/437 (2%)

Query: 34  AKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            + +H H+ + G N +   +GN  +++Y++ G   D   +F+ + +K+ +SWN  + GL 
Sbjct: 323 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 382

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS-DYALEMFSKMQLQGVRPSGFTFS 151
           +++  + A ++F  +PE D VSWNS+I   +    S   A++ F +M   G   S  TF 
Sbjct: 383 QNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFI 442

Query: 152 ILLSTVSS-ACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +LS VSS + H    QIH  +++  LS  +  +GN+L+  YGK G +     +F  M E
Sbjct: 443 NILSAVSSLSLHEVSHQIHALVLKYCLS-DDTAIGNALLSCYGKCGEMNECEKIFARMSE 501

Query: 209 L-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D +SWNS+ISG  ++     A+D  + M   G   D +T + +++AC  +  L++G +
Sbjct: 502 TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGME 561

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           V A  ++    S+ +V SA +D++SKC R++ + R FE +   +    N MIS Y R+G 
Sbjct: 562 VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGH 621

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKSGFDSNAVVAS 385
           GE AL+LF  M+ +   P   T   VLS+   +  VE G   F SM+            S
Sbjct: 622 GEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFS 681

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQ-NGRAAETLDVFEELLEEGL 443
            ++++  + G +D   +    +  K +++ W T++    + NGR  E      E+L E  
Sbjct: 682 CMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELE 741

Query: 444 PPDRITLAAVLLACNYG 460
           P + +    VLLA  Y 
Sbjct: 742 PQNAVNY--VLLANMYA 756



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 152/304 (50%), Gaps = 17/304 (5%)

Query: 149 TFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           TF  L++    +C     +++H   I+ G  + N+ L N+LI++Y ++G L  A  +F  
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGF-VGNLFLSNTLINIYVRIGDLGSAQKLFDE 159

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--LRNLD 263
           M   ++++W  LISG   +G  + A  +F  M  +G+ P+ Y     + AC +       
Sbjct: 160 MSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 219

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAVINVMISTY 322
            G Q+  L  K  + S+ +V +  I ++  C +   D+  +F+ +   +    N +IS Y
Sbjct: 220 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVY 279

Query: 323 GRYGFGEVALELFQLMLREDI----RPTE-FTLSCVLSSIPIPPVEHGSQFHSMAIKSGF 377
            R G    A +LF  M +E +    +P + F+   VL          G + H+  I++G 
Sbjct: 280 SRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEE----GRRKGREVHAHVIRTGL 335

Query: 378 DSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           + N V + + L+ MYAK+G+I  +  +F  + ++D VSWN+++ GL QN  + +  ++F 
Sbjct: 336 NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFS 395

Query: 437 ELLE 440
            + E
Sbjct: 396 LMPE 399



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 35/272 (12%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           + +  IH  + K   +  T +GN  L  Y + G  ++  ++F  + +             
Sbjct: 455 EVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETR----------- 503

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                              D VSWNSMISGY        A+++   M  +G R   FTF+
Sbjct: 504 -------------------DEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFA 544

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +LS  +S      G ++H   IR+ L  S+VV+G++L+DMY K G + YA   F  M  
Sbjct: 545 TILSACASVATLERGMEVHACGIRACLE-SDVVVGSALVDMYSKCGRIDYASRFFELMPL 603

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            ++ SWNS+ISG    G+GE AL  F  M   G  PD  T   V++AC+ +  +++G + 
Sbjct: 604 RNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEH 663

Query: 269 FALSVKVGFLSNSIV-LSATIDLFSKCNRLED 299
           F    +V  LS  +   S  +DL  +  +L++
Sbjct: 664 FKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDE 695



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
           ++ +++   S+K GF+ N  + +  I+++ +   L  + +LF+++   +      +IS Y
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP---IPPVEHGSQFHSMAIKSGFDS 379
            + G  + A   F+ M+R    P  +     L +         + G Q H +  K+ + S
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 235

Query: 380 NAVVASSLMEMYAKT-GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           + VV + L+ MY     S + +  +F  +  R+ +SWN+I+   ++ G A    D+F  +
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 295

Query: 439 LEEGL-----PPDRITLAAVL 454
            +EGL     P D  +  +VL
Sbjct: 296 QKEGLGFSFKPNDAFSEFSVL 316



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           E   + H  +IK GF  N  ++++L+ +Y + G + S+ ++F ++  R+LV+W  ++ G 
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           TQNG+  E    F +++  G  P+     + L AC   G
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 37/208 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C S  + +    +H    +    +   +G+  +D+YS+ G  D   + F+ +P 
Sbjct: 544 ATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPL 603

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN                               SMISGYA  G+ + AL++F++M
Sbjct: 604 RNVYSWN-------------------------------SMISGYARHGHGEKALKLFTRM 632

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L G  P   TF  +LS  S       G +   SM         V   + ++D+ G+ G 
Sbjct: 633 MLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGK 692

Query: 196 LYYAFGVFLNMEEL--DIISWNSLISGC 221
           L    G F+N   +  +++ W +++  C
Sbjct: 693 L-DEVGDFINSMPMKPNVLIWRTVLGAC 719


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/535 (31%), Positives = 294/535 (54%), Gaps = 44/535 (8%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           NL+ ALKVF+ +P P+V  +N +I G         A+  + KM +   RP+ FT+  L  
Sbjct: 79  NLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFK 138

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             ++A     G Q+H  +I+ GLS  +V + ++ I MYG  G +  A  +       D+I
Sbjct: 139 ACTAAEAAEEGVQVHAHVIKQGLS-GDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVI 197

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            +N++I G    G  E A + F+SM                          + K V + +
Sbjct: 198 CFNAMIDGYLKCGEVEAAKELFWSM--------------------------EDKNVGSWN 231

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V V  ++             KC  +E++  LF ++   +    + MI  Y + G+ + AL
Sbjct: 232 VMVSGMA-------------KCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEAL 278

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           E+F +M RE+IRP +F LS VL++   +  ++ G   H+    +    +AV+ ++L++MY
Sbjct: 279 EVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMY 338

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +D + ++F K++K+++ +WN ++ GL  +GRA + +++F ++ ++   P+ ITL 
Sbjct: 339 AKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLL 398

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            VL AC + G VD+G+ +F++M+E YG+ PG EHY C++DLL +AG LG+A ++  +MP 
Sbjct: 399 GVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPM 458

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P  ++W ++L A   +GDV+L E V + +++L+  +   Y+LL+  YA  GRW+ +  V
Sbjct: 459 EPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANV 518

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +K+M++ G+   TG S I     ++ F  G+  H   + IYL+L+ +   ++ EG
Sbjct: 519 RKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEG 573



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 12/223 (5%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +D Y + G  +   +LF  +  KN  SWN+ + G+ K   ++ A ++F+E+ E + +
Sbjct: 200 NAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEI 259

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQI 166
           SW++MI GY   GY   ALE+F+ MQ + +RP  F    +LS+V +AC        G+ I
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKF----VLSSVLAACANLGALDQGRWI 315

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H  +  +  S  + VLG +L+DMY K G L  A+ VF  ME+ ++ +WN++I G    G 
Sbjct: 316 HAYVNNNSNSF-DAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGR 374

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            E A++ F+ M+   + P+  T+  V++AC     +D+G ++F
Sbjct: 375 AEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIF 417



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 106/245 (43%), Gaps = 38/245 (15%)

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCN--RLEDSVRLFEQLDRWDYAVINVMISTYG 323
           KQV A++++ G   +  V    +  ++  +   L  ++++FE +   +  V N++I    
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAV 382
           +      A+  +  M+    RP +FT   +  +         G Q H+  IK G   +  
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 383 VASSLMEMYA-------------------------------KTGSIDSSTEIFVKLDKRD 411
           + S+ ++MY                                K G ++++ E+F  ++ ++
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKN 226

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           + SWN ++ G+ + G   E  ++F E+ E+    + I+ +A++     GG+  + + VF+
Sbjct: 227 VGSWNVMVSGMAKCGMIEEARELFNEMKEK----NEISWSAMIDGYIKGGYYKEALEVFN 282

Query: 472 AMKEE 476
            M+ E
Sbjct: 283 VMQRE 287


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 313/622 (50%), Gaps = 36/622 (5%)

Query: 4   YLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF 63
           +L K+      L +  QL+      K+  F K IH HL                 + +  
Sbjct: 14  FLLKSSTVGHPLEHTIQLLKVSADTKNLKFGKMIHAHL-----------------IITNQ 56

Query: 64  GTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA 123
            T D+++Q+            N  +    K D +  A  +FD + + +VVSW ++++GY 
Sbjct: 57  ATKDNIVQV------------NSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYF 104

Query: 124 SCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSN 179
             G     L +F  M  +  +RP+ + F+ ++S+ S +     G Q HG  ++SGL    
Sbjct: 105 HNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQ 164

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
            V  N+LI MY +   +  A  V+  +  LD+ S+N +I+G   +GY   AL+    M  
Sbjct: 165 YV-KNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVD 223

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
                D  T       C+ L++L  G QV     + G   +S V SA ID++ KC  + +
Sbjct: 224 ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILN 283

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP- 358
           + ++F +L   +      +++ Y + G  E AL  F  M  + + P E+T + +L+S   
Sbjct: 284 ARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAG 343

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
           I  + HG   H+   KSGF+ + +V ++L+ MY+K+GSI+++ ++F+++  RD ++W+ +
Sbjct: 344 ISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAM 403

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + GL+ +G   E L VF+E+L     P  +T   VL AC + G V +G    + + ++ G
Sbjct: 404 ICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTG 463

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + PG EHY CI+ LLC+AG+L +A +   + P +     W ++L A  ++ +  L + VA
Sbjct: 464 IEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVA 523

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           E ++ +       Y LL+  YA   RW+ +V+++K+MR+  + K  G SWI I+N I+ F
Sbjct: 524 ELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVF 583

Query: 599 NAGELQHHGGQKIY-LVLRLLT 619
            +    H    +IY  V  LLT
Sbjct: 584 VSEGKTHPESNQIYEKVQELLT 605


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/605 (30%), Positives = 310/605 (51%), Gaps = 43/605 (7%)

Query: 34  AKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            + +HG+  + G N A   +GN  +++Y++ G                            
Sbjct: 121 GRQVHGYAIRTGLNDAKVAVGNGLINMYAKCG---------------------------- 152

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-S 151
              ++D A  VF  + + D VSWNSMI+G       + A++ ++ M+  G+ PS F   S
Sbjct: 153 ---DIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALIS 209

Query: 152 ILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L S  S  C   G+Q HG  I+ GL + +V + N+L+ +Y +   L     VF  M E 
Sbjct: 210 ALSSCASLGCILLGQQTHGEGIKLGLDM-DVSVSNTLLALYAETSRLAECQKVFSWMLER 268

Query: 210 DIISWNSLISGCFNSGYG-ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           D +SWN++I    +SG     A++ F  M  +G+SP+  T   ++   + L       Q+
Sbjct: 269 DQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQI 328

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGF 327
            AL +K     ++ + +A +  + K   +E+   +F ++ +R D    N MIS Y     
Sbjct: 329 HALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNEL 388

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
              A++L  LM++   R   FT + VLS+   +  +E G + H+ AI++  +S+ V+ S+
Sbjct: 389 LCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSA 448

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MY+K G ID ++  F  +  R+L SWN+++ G  ++G     L +F  +   G  PD
Sbjct: 449 LVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPD 508

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT   VL AC++ G VD+G   F +M E YG++P  EHY+C++DLL +AG+L K  +  
Sbjct: 509 HITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFI 568

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTE---NVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           + MP +P   IW ++L A    G+ + TE     AE + ++   + + Y LL+  YA  G
Sbjct: 569 NKMPIKPNILIWRTVLGA-CCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGG 627

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +WE + R ++ MR+  + K  GCSW+ +K+ ++ F AG+  H     IY  L+ L  ++ 
Sbjct: 628 KWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIR 687

Query: 624 DEGCV 628
           D G V
Sbjct: 688 DAGYV 692



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 252/532 (47%), Gaps = 51/532 (9%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A   H ++ K GF++  +L N  +++Y R G               +C+S          
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIG---------------DCVS---------- 53

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                 A K+FDE+P+ + V+W  +ISGY   G  + A  +  +M  +G  P+ F F   
Sbjct: 54  ------ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSA 107

Query: 154 LSTVSSAC----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +     +      G+Q+HG  IR+GL+ + V +GN LI+MY K G + +A  VF  M + 
Sbjct: 108 IRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDK 167

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +SWNS+I+G   +   E A+  + SMR +G  P  + +   +++C  L  +  G+Q  
Sbjct: 168 DSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTH 227

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG- 328
              +K+G   +  V +  + L+++ +RL +  ++F  +   D    N +I      G   
Sbjct: 228 GEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASV 287

Query: 329 EVALELFQLMLREDIRPTEFT---LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             A+E+F  M+R    P   T   L   +SS+    + H  Q H++ +K     +  + +
Sbjct: 288 SEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSH--QIHALILKYNVKDDNAIEN 345

Query: 386 SLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +L+  Y K+G +++  EIF ++ ++RD VSWN+++ G   N    + +D+   +++ G  
Sbjct: 346 ALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQR 405

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGK 501
            D  T A VL AC     ++ GM V +       E  V+ G    + ++D+  + G++  
Sbjct: 406 LDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIG----SALVDMYSKCGRIDY 461

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM-MDLQLPSPLPY 552
           A    + MP +   S W S++   A +G       +  RM +  QLP  + +
Sbjct: 462 ASRFFNLMPVRNLYS-WNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITF 512



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 205/462 (44%), Gaps = 45/462 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S       +  HG   KLG +    + N  L LY+      +  ++F  + +++ +SW
Sbjct: 214 CASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSW 273

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS-DYALEMFSKMQLQGV 143
                                          N++I   A  G S   A+E+F +M   G 
Sbjct: 274 -------------------------------NTVIGALADSGASVSEAIEVFLEMMRAGW 302

Query: 144 RPSGFTFSILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            P+  TF  LL+TVSS    K   QIH  +++  +   N +  N+L+  YGK G +    
Sbjct: 303 SPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAI-ENALLACYGKSGEMENCE 361

Query: 201 GVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
            +F  M E  D +SWNS+ISG  ++     A+D  + M   G   D +T + V++AC  +
Sbjct: 362 EIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATV 421

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
             L+ G +V A +++    S+ ++ SA +D++SKC R++ + R F  +   +    N MI
Sbjct: 422 ATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMI 481

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGF 377
           S Y R+G G+ AL LF  M      P   T   VLS+   I  V+ G + F SM    G 
Sbjct: 482 SGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGL 541

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQ-NGRAAETLDVF 435
                  S ++++  + G +D       K+  K +++ W T++    + NGR  E     
Sbjct: 542 VPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRA 601

Query: 436 EELLEEGLPPDRITLAAVLLACNY--GGFVDKGMLVFSAMKE 475
            E+L    P + +    VLL+  Y  GG  +       AM+E
Sbjct: 602 AEMLFNMDPQNAVNY--VLLSNMYASGGKWEDMARTRRAMRE 641



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 37/208 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  + +    +H    +    +   +G+  +D+YS+ G  D   + F+ +P 
Sbjct: 412 ATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPV 471

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN                               SMISGYA  G+ D AL +F++M
Sbjct: 472 RNLYSWN-------------------------------SMISGYARHGHGDNALRLFTRM 500

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L G  P   TF  +LS  S       G +   SM      +  V   + ++D+ G+ G 
Sbjct: 501 KLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGE 560

Query: 196 LYYAFGVFLNMEEL--DIISWNSLISGC 221
           L      F+N   +  +I+ W +++  C
Sbjct: 561 L-DKIENFINKMPIKPNILIWRTVLGAC 587


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/643 (27%), Positives = 307/643 (47%), Gaps = 72/643 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQ 78
           L++ C   +S D  + +H    K G NA+  L NR +       +G      +LFDEIP+
Sbjct: 45  LLETC---ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 101

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N   W                               N+MI GY+   +    + ++ +M
Sbjct: 102 PNLFIW-------------------------------NTMIRGYSRLDFPQLGVSLYLEM 130

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV+P  +TF  L    +      +G+Q+HG +++ GL   NV +  +L+ MY   G 
Sbjct: 131 LRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQY-NVFVHTALVQMYLLCGQ 189

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A GVF    + D+I+WN +IS     G  E +   F  M      P   T+ +V++A
Sbjct: 190 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 249

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-----W 310
           C+KL++L  GK+V +        SN ++ +A ID+++ C  ++ ++ +F  ++      W
Sbjct: 250 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 309

Query: 311 --------------------------DYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
                                     DY     MI  Y R    + ALELF+ M   +++
Sbjct: 310 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P EFT+  VL++   +  +E G    +   ++   ++  V ++L++MY K G +D +  I
Sbjct: 370 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 429

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++ +RD  +W  +++GL  NG   + LD+F  +L+  + PD IT   VL AC + G V
Sbjct: 430 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 489

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
           DKG   F  M  ++G+ P   HY C++DLL +AG+L +A ++   MP +    +W ++L 
Sbjct: 490 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 549

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
              +Y +  + E V +++++L+  +   Y LL   YA   RW  +  ++++M   GI K 
Sbjct: 550 GCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKX 609

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            GCS I +  R++ F AG+  H   + I   L  +T +++  G
Sbjct: 610 PGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAG 652



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 190/429 (44%), Gaps = 47/429 (10%)

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM--YGKLGVLY 197
           L+   P       LL T  S    +Q+H   I+ GL+ +N VL N ++      + G   
Sbjct: 32  LKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLN-ANPVLQNRVMTFCCTHEYGDFQ 90

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  +F  + E ++  WN++I G     + +L +  +  M   G  PD YT   +    T
Sbjct: 91  YARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFT 150

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +   L+ G+Q+    +K G   N  V +A + ++  C +L+ +  +F+   + D    N+
Sbjct: 151 RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 210

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           +IS Y + G  E +  LF +M  + + PT  TL  VLS+   +  +  G + HS      
Sbjct: 211 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK 270

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG---------- 426
            +SN V+ +++++MYA  G +DS+  IF  ++ RD++SW TI+ G T  G          
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 330

Query: 427 ---------------------RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
                                R  E L++F  +    + PD  T+ +VL AC + G ++ 
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 390

Query: 466 GMLVFS-----AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G  + +      +K +  V         +ID+  + G + KA  I   M  Q     W +
Sbjct: 391 GEWIRTYIDRNKIKNDLFVRNA------LIDMYFKCGDVDKAESIFREMS-QRDKFTWTA 443

Query: 521 ILRASAIYG 529
           ++   A+ G
Sbjct: 444 MIVGLAVNG 452


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/630 (28%), Positives = 318/630 (50%), Gaps = 50/630 (7%)

Query: 1   MSSYLKKAHVNKASLSYCSQ--------------LIDRCLSFKSFDFAKTIHGHLFKLGF 46
           +  Y+K    N A  ++C                ++  C +   F     +HG +   GF
Sbjct: 218 LHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGF 277

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
                + N  + +YS+ G       LFD                         A K+F+ 
Sbjct: 278 EFDPQVANTLVAMYSKCG------NLFD-------------------------ARKLFNT 306

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHG 163
           +P+ D V+WN +I+GY   G++D A  +F+ M   GV+P   TF+  L ++    S  H 
Sbjct: 307 MPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHC 366

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K++H  ++R  +   +V L ++LID+Y K G +  A  +F     +D+    ++ISG   
Sbjct: 367 KEVHSYIVRHRVPF-DVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVL 425

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G    A++ F  +   G  P+  T++ V+ AC  L  L  GK++    +K    +   V
Sbjct: 426 HGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNV 485

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            SA  D+++KC RL+ +   F ++   D    N MIS++ + G  E+A++LF+ M     
Sbjct: 486 GSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGA 545

Query: 344 R-PTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +  +    S + S+  +P + +G + H   I++ F S+  VAS+L++MY+K G +  +  
Sbjct: 546 KFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARC 605

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  +  ++ VSWN+I+     +G A E LD+F E+L  G+ PD +T   ++ AC + G 
Sbjct: 606 VFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGL 665

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           V +G+  F  M  EYG+    EHYAC++DL  +AG+L +A D   +MPF P   +W ++L
Sbjct: 666 VGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLL 725

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  ++G+V+L +  +  +++L   +   Y LL+  +A  G W ++++V+++M++ G+ K
Sbjct: 726 GACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQK 785

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           + G SWI +    + F+A E  H    +IY
Sbjct: 786 IPGYSWIDVNGGTHMFSAAEGNHPESVEIY 815



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 241/518 (46%), Gaps = 48/518 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C    +      +H     LGF+   ++G+  + LY+  G                
Sbjct: 151 VIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGY--------------- 195

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                IC            A +VFDE+P+ D + WN M+ GY   G  + A+  F  M+ 
Sbjct: 196 -----IC-----------DARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRT 239

Query: 141 QGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
                +  T++ +LS  ++    C G Q+HG +I SG      V  N+L+ MY K G L+
Sbjct: 240 SYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQV-ANTLVAMYSKCGNLF 298

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  M + D ++WN LI+G   +G+ + A   F +M  +G  PD  T +  + +  
Sbjct: 299 DARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSIL 358

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +  +L   K+V +  V+     +  + SA ID++ K   +E + ++F+Q    D AV   
Sbjct: 359 ESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTA 418

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV-LSSIPIPPVEHGSQFHSMAIKSG 376
           MIS Y  +G    A+  F+ +++E + P   T++ V  +   +  ++ G + H   +K  
Sbjct: 419 MISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQ 478

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            ++   V S++ +MYAK G +D + E F ++ + D + WN+++   +QNG+    +D+F 
Sbjct: 479 LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFR 538

Query: 437 ELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           ++   G   D ++L++ L +       Y G    G ++ +A   +  V       + +ID
Sbjct: 539 QMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVA------SALID 592

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           +  + G+L  A  + + M  +   S W SI+ A   +G
Sbjct: 593 MYSKCGKLALARCVFNLMAGKNEVS-WNSIIAAYGNHG 629



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 167/351 (47%), Gaps = 13/351 (3%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQ----- 165
           + + WN MI G    G+ D+AL  + KM    V P  +TF  ++     AC G       
Sbjct: 109 NALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIK----ACGGLNNVPLC 164

Query: 166 --IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
             +H +    G  + ++ +G++LI +Y   G +  A  VF  + + D I WN ++ G   
Sbjct: 165 MVVHNTARSLGFHV-DLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVK 223

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           SG    A+  F  MR S    +  T + +++ C        G QV  L +  GF  +  V
Sbjct: 224 SGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQV 283

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +  + ++SKC  L D+ +LF  + + D    N +I+ Y + GF + A  LF  M+   +
Sbjct: 284 ANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGV 343

Query: 344 RPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +P   T +  L SI     + H  + HS  ++     +  + S+L+++Y K G ++ + +
Sbjct: 344 KPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARK 403

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           IF +    D+     ++ G   +G   + ++ F  L++EG+ P+ +T+A+V
Sbjct: 404 IFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASV 454



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 10/305 (3%)

Query: 155 STVSSACHGKQIHGSMIRSGLS----LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           S  S     +Q+H  +I  G+S    LS+ VLG     +Y   G +     +F  +E  +
Sbjct: 55  SDASVVQQARQVHTQIIVGGMSDVCALSSRVLG-----LYVLCGRISDGGNLFFGLELCN 109

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            + WN +I G +  G+ + AL  ++ M  S  SPD+YT   VI AC  L N+     V  
Sbjct: 110 ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHN 169

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            +  +GF  +  V SA I L++    + D+ R+F++L + D  + NVM+  Y + G    
Sbjct: 170 TARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNN 229

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+  F  M          T +C+LS          G+Q H + I SGF+ +  VA++L+ 
Sbjct: 230 AMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVA 289

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K G++  + ++F  + + D V+WN ++ G  QNG   E   +F  ++  G+ PD +T
Sbjct: 290 MYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVT 349

Query: 450 LAAVL 454
            A+ L
Sbjct: 350 FASFL 354



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 123/284 (43%), Gaps = 27/284 (9%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQLDRW 310
           +  AC+    + + +QV    + VG +S+   LS+ +  L+  C R+ D   LF  L+  
Sbjct: 50  LFRACSDASVVQQARQVHT-QIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELC 108

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV------LSSIPIPPVEH 364
           +    N MI      G+ + AL  +  ML  ++ P ++T   V      L+++P+  V  
Sbjct: 109 NALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV-- 166

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
               H+ A   GF  +  V S+L+++YA  G I  +  +F +L +RD + WN ++ G  +
Sbjct: 167 ---VHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVK 223

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE- 483
           +G     +  F  +       + +T   +L  C   G        F    + +G++ G  
Sbjct: 224 SGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRG-------KFCLGTQVHGLVIGSG 276

Query: 484 -----EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
                +    ++ +  + G L  A  + +TMP Q     W  ++
Sbjct: 277 FEFDPQVANTLVAMYSKCGNLFDARKLFNTMP-QTDTVTWNGLI 319


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/643 (27%), Positives = 307/643 (47%), Gaps = 72/643 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL--YSRFGTSDDVLQLFDEIPQ 78
           L++ C   +S D  + +H    K G NA+  L NR +       +G      +LFDEIP+
Sbjct: 24  LLETC---ESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N   W                               N+MI GY+   +    + ++ +M
Sbjct: 81  PNLFIW-------------------------------NTMIRGYSRLDFPQLGVSLYLEM 109

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV+P  +TF  L    +      +G+Q+HG +++ GL   NV +  +L+ MY   G 
Sbjct: 110 LRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQY-NVFVHTALVQMYLLCGQ 168

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A GVF    + D+I+WN +IS     G  E +   F  M      P   T+ +V++A
Sbjct: 169 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 228

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-----W 310
           C+KL++L  GK+V +        SN ++ +A ID+++ C  ++ ++ +F  ++      W
Sbjct: 229 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 288

Query: 311 --------------------------DYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
                                     DY     MI  Y R    + ALELF+ M   +++
Sbjct: 289 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P EFT+  VL++   +  +E G    +   ++   ++  V ++L++MY K G +D +  I
Sbjct: 349 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 408

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++ +RD  +W  +++GL  NG   + LD+F  +L+  + PD IT   VL AC + G V
Sbjct: 409 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 468

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
           DKG   F  M  ++G+ P   HY C++DLL +AG+L +A ++   MP +    +W ++L 
Sbjct: 469 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 528

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
              +Y +  + E V +++++L+  +   Y LL   YA   RW  +  ++++M   GI K 
Sbjct: 529 GCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKT 588

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            GCS I +  R++ F AG+  H   + I   L  +T +++  G
Sbjct: 589 PGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAG 631



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 199/453 (43%), Gaps = 48/453 (10%)

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM--YGKLGVLY 197
           L+   P       LL T  S    +Q+H   I+ GL+ +N VL N ++      + G   
Sbjct: 11  LKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLN-ANPVLQNRVMTFCCTHEYGDFQ 69

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  +F  + E ++  WN++I G     + +L +  +  M   G  PD YT   +    T
Sbjct: 70  YARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFT 129

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +   L+ G+Q+    +K G   N  V +A + ++  C +L+ +  +F+   + D    N+
Sbjct: 130 RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 189

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSG 376
           +IS Y + G  E +  LF +M  + + PT  TL  VLS+   +  +  G + HS      
Sbjct: 190 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK 249

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG---------- 426
            +SN V+ +++++MYA  G +DS+  IF  ++ RD++SW TI+ G T  G          
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 309

Query: 427 ---------------------RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
                                R  E L++F  +    + PD  T+ +VL AC + G ++ 
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 369

Query: 466 GMLVFS-----AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G  + +      +K +  V         +ID+  + G + KA  I   M  Q     W +
Sbjct: 370 GEWIRTYIDRNKIKNDLFVRNA------LIDMYFKCGDVDKAESIFREMS-QRDKFTWTA 422

Query: 521 ILRASAIYGDVKLTENVAERMMDLQ-LPSPLPY 552
           ++   A+ G  +   ++   M+    LP  + Y
Sbjct: 423 MIVGLAVNGHGEKALDMFSNMLKASILPDEITY 455


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 289/538 (53%), Gaps = 12/538 (2%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF-SKMQLQGVRPSGFTFSILLS 155
           LD   KVFD   E     WN+MI G+         + +F   M+ +       TF   L+
Sbjct: 153 LDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALT 212

Query: 156 TVSS-ACHG--KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            VS   C G  +Q+H   +++   LS  VL N+++ MY +   +  +F VF  M E D++
Sbjct: 213 AVSQLQCLGLGQQMHAFTMKNHTVLSVTVL-NAILVMYSRCNSVQTSFEVFEKMPEKDVV 271

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN++ISG   +G  E  L   Y M+  G+  D  T++ +++A + LRN + GKQ  A  
Sbjct: 272 SWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYL 331

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGFGEV 330
           ++ G   + +  S  ID+++K   +  S R+FE   +   D A  N +I+ Y + G  E 
Sbjct: 332 IRHGIKFDGMD-SYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQ 390

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A   F+LML +++RP   TL+ +L +   +  +  G Q H ++I+   D N  V ++L++
Sbjct: 391 AFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVD 450

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K+G+I+ +  +F +  +R+ V++ T+++G  Q+G     L +F  + + G+ PD IT
Sbjct: 451 MYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAIT 510

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             AVL AC+Y G VD+G+ +F +MK ++ + P   HY C+ D+L + G++ +A +    +
Sbjct: 511 FVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQL 570

Query: 510 PFQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--YSLLTQAYAMRGRWE 566
             +     IW S+L A  ++G ++L E V+ R++++     L     LL+  YA    WE
Sbjct: 571 GEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWE 630

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
            + +++K MR+ G+ K  GCSWI     +  F + +  H   ++IY +L  L  EMED
Sbjct: 631 TVDKLRKSMREKGLRKEVGCSWIDTGGLLVRFVSKDKDHTRCEEIYEMLERLAMEMED 688



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 213/477 (44%), Gaps = 36/477 (7%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV--LQL 72
           L  C ++ D CL   +  +   I GH+    F    YL  + +   +     DDV  L  
Sbjct: 153 LDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMK--TEHTILDDVTFLSA 210

Query: 73  FDEIPQKNCISW--------------------NICLRGLLKSDNLDTALKVFDEIPEPDV 112
              + Q  C+                      N  L    + +++ T+ +VF+++PE DV
Sbjct: 211 LTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDV 270

Query: 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGS 169
           VSWN+MISG+   G  +  L +  +MQ QG      T + LLS  S+  +   GKQ H  
Sbjct: 271 VSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAY 330

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL--NMEELDIISWNSLISGCFNSGYG 227
           +IR G+      + + LIDMY K G++  +  VF   N++  D  +WN++I+G   +G  
Sbjct: 331 LIRHGIKFDG--MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLV 388

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
           E A   F  M      P+  T++ ++ AC+ L +++ GKQ+  +S++     N  V +A 
Sbjct: 389 EQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTAL 448

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           +D++SK   +  +  +F Q    +      MI  YG++G GE AL LF  M +  I+P  
Sbjct: 449 VDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDA 508

Query: 348 FTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
            T   VLS+      V+ G + F SM        +      + +M  + G +  + E   
Sbjct: 509 ITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVK 568

Query: 406 KLDKRDLV--SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
           +L +   V   W +++     +G      +V   LLE     DR+    VLL+  Y 
Sbjct: 569 QLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMN-SVDRLAGYQVLLSNMYA 624



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVF  + + DV++WN+M+S Y        A+  F  M   G++PS  +F  +   +SS  
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 162 HGKQ---IHGSMIRSGLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
             K    ++G +++ G   +N + + +S I MY +LG L     VF +  E     WN++
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 218 ISGCF-NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           I G   N+ + E       +M+      D+ T    + A ++L+ L  G+Q+ A ++K  
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            + +  VL+A + ++S+CN ++ S  +FE++   D    N MIS + + G  E  L L  
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVY 294

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M ++       T++ +LS+   +   E G Q H+  I+ G   +  + S L++MYAK+G
Sbjct: 295 EMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDG-MDSYLIDMYAKSG 353

Query: 396 SIDSSTEIFV--KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            I  S  +F    +  RD  +WN ++ G TQNG   +    F  +LE+ L P+ +TLA++
Sbjct: 354 LIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASI 413

Query: 454 LLACNYGGFVDKG 466
           L AC+  G ++ G
Sbjct: 414 LPACSSLGSINLG 426


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/617 (29%), Positives = 301/617 (48%), Gaps = 52/617 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNA-HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C    + D  +  H    +LG  A   Y GN  L  Y+R G  DD               
Sbjct: 118 CARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDD--------------- 162

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM----- 138
                           A +VFD +P  DVV+WNSM+ GY S G    AL  F +M     
Sbjct: 163 ----------------AERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALE 206

Query: 139 -QLQGVRPSGFTFSILLSTVSSAC-HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            Q  GV   G   ++    + SA   G+++H  +IR G+   +V +G S++DMY K G +
Sbjct: 207 VQHDGV---GIIAALAACCLESALMQGREVHAYVIRHGME-HDVKVGTSILDMYCKCGDI 262

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A GVF  M    +++WN +I G   +   E A D F  M+  G+  +  T   ++ AC
Sbjct: 263 ASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAAC 322

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +  +   G+ V     +  FL + ++ +A ++++SK  +++ S ++F Q+        N
Sbjct: 323 AQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWN 382

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKS 375
            MI+ Y        A+ LF  +L + + P  FT+S V+ + + +  +    Q HS  I+ 
Sbjct: 383 NMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRL 442

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G+  N ++ +++M MYA+ G + SS EIF K+  +D++SWNT++MG   +G+    L++F
Sbjct: 443 GYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMF 502

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            E+   GL P+  T  +VL AC+  G  D+G   F++M+ +YG++P  EHY C+ DLL +
Sbjct: 503 SEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGR 562

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-----PSPL 550
           AG L + +     MP  P   +W S+L AS    D+ + E  AER+  L+       +  
Sbjct: 563 AGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTG 622

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y L++  YA  GRW+ + R+K +M + G+ +    S + +     +F  G+  H   + 
Sbjct: 623 CYVLISSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKM 682

Query: 611 IYLVLRLLT---WEMED 624
           I  V   L+    EM D
Sbjct: 683 IQEVSNFLSGKIGEMRD 699



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/533 (24%), Positives = 232/533 (43%), Gaps = 58/533 (10%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL-- 154
           +D A +        D    N +I G A  G    AL  ++ M   G RP  FTF ++L  
Sbjct: 58  MDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGARPDRFTFPVVLKC 117

Query: 155 -STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            + + +   G+  H + IR G++ ++V  GNSL+  Y +LG++  A  VF  M   D+++
Sbjct: 118 CARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVT 177

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           WNS++ G  ++G G LAL  F  M  +     D   I   + AC     L +G++V A  
Sbjct: 178 WNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQGREVHAYV 237

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           ++ G   +  V ++ +D++ KC  +  +  +F  +        N MI  Y      E A 
Sbjct: 238 IRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAF 297

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           + F  M  E  +    T   +L++        +G   H    +  F  + V+ ++L+EMY
Sbjct: 298 DCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMY 357

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K G + SS ++F ++  + LVSWN ++          E + +F +LL + L PD  T++
Sbjct: 358 SKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMS 417

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           AV+ A     FV  G+L        Y +  G                            +
Sbjct: 418 AVVPA-----FVLLGLLRQCRQMHSYIIRLG----------------------------Y 444

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
                I  +I+   A  GDV  +  + ++M    + S   ++ +   YA+ G+  + + +
Sbjct: 445 GENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVIS---WNTMIMGYAIHGQGRSALEM 501

Query: 572 KKVMRKNG--------INKVTGCSWIGIKNRIYT-FNA--------GELQHHG 607
              M+ NG        ++ +T CS  G+ +  +T FN+         +++H+G
Sbjct: 502 FSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYG 554



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 42/308 (13%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           KA  ++  +     L+  C   +S  + +++HG++ +  F  H  L    L++YS+ G  
Sbjct: 304 KAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKV 363

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
               ++F ++  K  +                               SWN+MI+ Y    
Sbjct: 364 KSSEKVFGQMTTKTLV-------------------------------SWNNMIAAYMYKE 392

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFS------ILLSTVSSACHGKQIHGSMIRSGLSLSNV 180
               A+ +F  +  Q + P  FT S      +LL  +      +Q+H  +IR G    N 
Sbjct: 393 MYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQC---RQMHSYIIRLGYG-ENT 448

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
           ++ N+++ MY + G +  +  +F  M   D+ISWN++I G    G G  AL+ F  M+ +
Sbjct: 449 LIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCN 508

Query: 241 GYSPDEYTISIVINACTKLRNLDKG-KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           G  P+E T   V+ AC+     D+G  Q  ++    G +          DL  +   L++
Sbjct: 509 GLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKE 568

Query: 300 SVRLFEQL 307
            ++  E +
Sbjct: 569 VMQFIENM 576


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/542 (30%), Positives = 290/542 (53%), Gaps = 7/542 (1%)

Query: 88  LRGLLKSDNL-DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
           L G+    NL + +L+VFDE+PE DV SWN++IS +   G ++ ALE+F +M+  G  P+
Sbjct: 148 LVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPN 207

Query: 147 GFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             + ++ +S  S       GK+IH   ++ G  L   V  ++L+DMYGK   L  A  VF
Sbjct: 208 SVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYV-NSALVDMYGKCDCLEVAREVF 266

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M    +++WNS+I G    G  +  ++    M   G  P + T++ ++ AC++ RNL 
Sbjct: 267 QKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLL 326

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GK +    ++    ++  V  + IDL+ KC     +  +F +  +      NVMIS+Y 
Sbjct: 327 HGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYI 386

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
             G    A+E++  M+   ++P   T + VL +   +  +E G Q H    +S  +++ +
Sbjct: 387 SVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDEL 446

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + S+L++MY+K G+   +  IF  + K+D+VSW  ++     +G+  E L  F+E+ + G
Sbjct: 447 LLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFG 506

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           L PD +TL AVL AC + G +D+G+  FS M+ +YG+ P  EHY+C+ID+L +AG+L +A
Sbjct: 507 LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEA 566

Query: 503 IDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
            +I    P       +  ++  A  ++ +  L + +A  +++        Y +L   YA 
Sbjct: 567 YEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYAS 626

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
              W+A  RV+  M++ G+ K  GCSWI + +++  F A +  H   + +Y  L LL+  
Sbjct: 627 GESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLSGH 686

Query: 622 ME 623
           ME
Sbjct: 687 ME 688



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 228/440 (51%), Gaps = 9/440 (2%)

Query: 99  TALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLST 156
           +A  VF+      DV  WNS++SGY+        LE+F ++       P  FTF  ++  
Sbjct: 57  SARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA 116

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
             +      G+ IH  +++SG  + +VV+ +SL+ MY K  +   +  VF  M E D+ S
Sbjct: 117 YGALGREFLGRMIHTLVVKSGY-VCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVAS 175

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN++IS  + SG  E AL+ F  M  SG+ P+  ++++ I+AC++L  L++GK++    V
Sbjct: 176 WNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCV 235

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K GF  +  V SA +D++ KC+ LE +  +F+++ R      N MI  Y   G  +  +E
Sbjct: 236 KKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVE 295

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +   M+ E  RP++ TL+ +L +      + HG   H   I+S  +++  V  SL+++Y 
Sbjct: 296 ILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYF 355

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G  + +  +F K  K    SWN ++      G   + ++V+++++  G+ PD +T  +
Sbjct: 356 KCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTS 415

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC+    ++KG  +  ++ E   +   E   + ++D+  + G   +A  I +++P +
Sbjct: 416 VLPACSQLAALEKGKQIHLSISESR-LETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK 474

Query: 513 PGCSIWESILRASAIYGDVK 532
              S W  ++ A   +G  +
Sbjct: 475 DVVS-WTVMISAYGSHGQPR 493



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 191/395 (48%), Gaps = 44/395 (11%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           ++S CS+L+         +  K IH    K GF    Y+ +  +D+Y +    +   ++F
Sbjct: 214 AISACSRLL-------WLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVF 266

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            ++P+K+ ++W                               NSMI GY + G S   +E
Sbjct: 267 QKMPRKSLVAW-------------------------------NSMIKGYVAKGDSKSCVE 295

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           + ++M ++G RPS  T + +L   S +    HGK IHG +IRS ++ +++ +  SLID+Y
Sbjct: 296 ILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVN-ADIYVNCSLIDLY 354

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G    A  VF   ++    SWN +IS   + G    A++ +  M   G  PD  T +
Sbjct: 355 FKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFT 414

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ AC++L  L+KGKQ+     +    ++ ++LSA +D++SKC   +++ R+F  + + 
Sbjct: 415 SVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK 474

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFH 369
           D     VMIS YG +G    AL  F  M +  ++P   TL  VLS+      ++ G +F 
Sbjct: 475 DVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFF 534

Query: 370 S-MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           S M  K G +      S ++++  + G +  + EI
Sbjct: 535 SQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEI 569



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 36/300 (12%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            + S +  + ++  C   ++    K IHG++ +   NA  Y+    +DLY + G ++   
Sbjct: 305 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 364

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +F +  +    SWN+ +   +   N   A++V+D+           M+S          
Sbjct: 365 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQ-----------MVS---------- 403

Query: 131 ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
                      GV+P   TF+ +L   S +++   GKQIH S+  S L    ++L ++L+
Sbjct: 404 ----------VGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLL-SALL 452

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G    AF +F ++ + D++SW  +IS   + G    AL QF  M+  G  PD  
Sbjct: 453 DMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGV 512

Query: 248 TISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           T+  V++AC     +D+G + F+ +  K G        S  ID+  +  RL ++  + +Q
Sbjct: 513 TLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQ 572



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNGR 427
           H   +  G   + V+  SL+ +Y       S+  +F   D R D+  WN++M G ++N  
Sbjct: 27  HQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSM 86

Query: 428 AAETLDVFEELLEEGL-PPDRITLAAVLLACNYGGF 462
             +TL+VF+ LL   +  PD  T   V+ A  YG  
Sbjct: 87  FHDTLEVFKRLLNCSICVPDSFTFPNVIKA--YGAL 120


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 175/623 (28%), Positives = 304/623 (48%), Gaps = 44/623 (7%)

Query: 21  LIDRCLS--FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++D C+     S +  + IHG +   G     ++    +D Y + G+ DD  ++F     
Sbjct: 118 VLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF----- 172

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                 L+  DE P   +V+ ++MIS     G+   +L +F  M
Sbjct: 173 ----------------------LRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAM 210

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            L+G +PSG T   +L+  S    G      +  +M     +  NV LG +L+  Y +  
Sbjct: 211 NLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNV-LGTTLLTTYARSN 269

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A   F  ++  D++SWN++ +          AL  F  M   G  P   T    + 
Sbjct: 270 DLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALT 329

Query: 255 ACTKLRNLDK---GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD--R 309
           AC           GK++ +L  + G   ++ V +AT+++++KC  L D+  +FE++   R
Sbjct: 330 ACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTR 389

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVL-SSIPIPPVEHGSQ 367
            D    N M++ YG +G G+ A ELFQ M  E  ++P + T   VL +S     +  G +
Sbjct: 390 RDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGRE 449

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL--DKRDLVSWNTIMMGLTQN 425
            H+  + +GF+S+ V+ ++L+ MYAK GS+D +  IF K   ++ D+++W +++ G  Q 
Sbjct: 450 IHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQY 509

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G+A   L +F  + ++G+ P+ IT  + L ACN+GG +++G  + S M  ++G++P  +H
Sbjct: 510 GQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKH 569

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           ++CI+DLL + G+L +A  +      Q     W ++L A     +++  E  AER+M L 
Sbjct: 570 FSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLD 628

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                 Y +L   YA  GRW     ++K M   GI    GCS + +   +++F+AG+  H
Sbjct: 629 PEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSH 688

Query: 606 HGGQKIYLVLRLLTWEMEDEGCV 628
              ++IYL L  L W ++  G V
Sbjct: 689 PKSEEIYLELERLHWSIKAAGYV 711



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 220/466 (47%), Gaps = 51/466 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP--- 77
           L++ C    +    + IH  +    F  ++ LGN  + +YS+ G+  D  Q FD +P   
Sbjct: 13  LVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRAS 72

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVF-----DEIPEPDVVSWNSMISGYASCGYSDYAL 132
           +++ ++WN  +   L++ +   AL++F     D  P P+ V++ S++      G      
Sbjct: 73  KRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGL----- 127

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
                + L+ VR                     IHG ++ +G+     V   +L+D YGK
Sbjct: 128 -----LSLEDVRA--------------------IHGRIVGAGIEREAFVR-TALVDSYGK 161

Query: 193 LGVLYYAFGVFLNMEELD----IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           LG L  A+ VFL   + +    +++ +++IS C+ +G+ + +L  FY+M   G  P   T
Sbjct: 162 LGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVT 221

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQL 307
           +  V+NAC+ L        V   +++V   +   VL  T +  +++ N L  +   F+ +
Sbjct: 222 LVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAI 281

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH--- 364
              D    N M + Y ++     AL LF+ ML E +RP+  T    L++    P +    
Sbjct: 282 QSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASA 341

Query: 365 -GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMG 421
            G +  S+  ++G + +  VA++ + MYAK GS+  +  +F ++   +RD ++WN+++  
Sbjct: 342 IGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAA 401

Query: 422 LTQNGRAAETLDVFEELLEEGL-PPDRITLAAVLLACNYGGFVDKG 466
              +G   E  ++F+ +  E L  P+++T  AVL A      + +G
Sbjct: 402 YGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG 447



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 18/250 (7%)

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+ + +  ++NAC+ L NL  G+++ +      F  NS++ +A I ++SKC  L D+ + 
Sbjct: 5   PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQA 64

Query: 304 FEQLDRW---DYAVINVMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSS--- 356
           F++L R    D    N MIS + R G    AL+LF+ M  +    P   T   VL S   
Sbjct: 65  FDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVE 124

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD----L 412
             +  +E     H   + +G +  A V ++L++ Y K GS+D + E+F++    +    L
Sbjct: 125 AGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSL 184

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY------GGFV-DK 465
           V+ + ++    QNG   E+L +F  +  EG  P  +TL +VL AC+         FV ++
Sbjct: 185 VTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQ 244

Query: 466 GMLVFSAMKE 475
            M V SA ++
Sbjct: 245 AMEVVSATRD 254


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 179/571 (31%), Positives = 302/571 (52%), Gaps = 38/571 (6%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           + L  A+ VF  I EP+++ WN+M  G+A       AL+++  M   G+ P+ +TF  +L
Sbjct: 82  EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL--------------- 196
            + + +     G+QIHG +++ G  L ++ +  SLI MY + G L               
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDL-DLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200

Query: 197 ---------YYAFGVFLNMEEL-------DIISWNSLISGCFNSGYGELALDQFYSMRYS 240
                    Y + G   N ++L       D++SWN++ISG   +G  + AL+ F  M  +
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              PDE T+  V++AC +  +++ G+QV       GF SN  +++A IDL+SKC  LE +
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
             LFE+L   D    N +I  Y      + AL LFQ MLR    P + T+  +L +   +
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380

Query: 360 PPVEHGSQFHSMAIK--SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
             ++ G   H    K   G  + + + +SL++MYAK G I+++ ++F  +  + L SWN 
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G   +GRA  + D+F  + + G+ PD IT   +L AC++ G +D G  +F  M ++Y
Sbjct: 441 MIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDY 500

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
            + P  EHY C+IDLL  +G   +A ++ + M  +P   IW S+L+A  ++G+V+L E+ 
Sbjct: 501 KMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESF 560

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           AE ++ ++  +P  Y LL+  YA  GRW  + + + ++   G+ KV GCS I I + ++ 
Sbjct: 561 AENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHE 620

Query: 598 FNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           F  G+  H   ++IY +L  +   +E  G V
Sbjct: 621 FIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 183/345 (53%), Gaps = 14/345 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   K+F   + IHGH+ KLG +   Y+    + +Y + G  +D  ++FD+ P ++
Sbjct: 140 VLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRD 199

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   ++G      ++ A K+FDEIP  DVVSWN+MISGYA  G    ALE+F  M  
Sbjct: 200 VVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
             VRP   T    + TV SAC        G+Q+H  +   G   SN+ + N+LID+Y K 
Sbjct: 260 TNVRPDEST----MVTVVSACAQSGSIELGRQVHLWIDDHGFG-SNLKIVNALIDLYSKC 314

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A G+F  +   D+ISWN+LI G  +    + AL  F  M  SG +P++ T+  ++
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374

Query: 254 NACTKLRNLDKGK--QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            AC  L  +D G+   V+      G  + S + ++ ID+++KC  +E + ++F  +    
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +  N MI  +  +G  + + +LF  M +  I+P + T   +LS+
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A +VF+ I    + SWN+MI G+A  G +D + ++FS+M+  G++P   TF  
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           LLS  S +     G+ I  +M +       +     +ID+ G  G+   A  +   ME  
Sbjct: 476 LLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME 535

Query: 210 -DIISWNSLISGCFNSGYGELA 230
            D + W SL+  C   G  EL 
Sbjct: 536 PDGVIWCSLLKACKMHGNVELG 557


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/565 (29%), Positives = 288/565 (50%), Gaps = 69/565 (12%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K IH    + GF    +L N  L++Y+                               
Sbjct: 253 LGKQIHSLALRRGFVGELHLNNSLLEIYA------------------------------- 281

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FS 151
           K+ +++ A  +F E+PE +VVSWN MI+G+     SD ++E   +M+  G  P+  T  S
Sbjct: 282 KNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCIS 341

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           IL              G+  RSG    +V  G                  +F  + +  +
Sbjct: 342 IL--------------GACFRSG----DVETGRR----------------IFNTIPQPSV 367

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            +WN+++SG  N  + E A++ F  M++    PD  T+S+++++C +LR L+ GKQ+  +
Sbjct: 368 SAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQIHGV 427

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ-LDRWDYAVINVMISTYGRYGFGEV 330
           +++     +S ++S  I ++S+C ++E    +F+  ++  D A  N MIS   R      
Sbjct: 428 AIRTETSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTK 487

Query: 331 ALELFQLMLREDIR-PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           AL LF+ M +  +  P E T + VL S   +  + HG QFH   +KSG+ S++ V +++ 
Sbjct: 488 ALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVT 547

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G I+S+ + F  + +++ V WN ++ G   NGR  E +D++ E++  G  PD I
Sbjct: 548 DMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGI 607

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +VL AC++ G VD G+ + S+M+ ++G+ P  +HY CI+D L +AG+L  A  +   
Sbjct: 608 TFVSVLTACSHSGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEA 667

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
            P++    +WE +L +  +YGDV L   VAE++M L   +   Y LL+  Y+   +W+  
Sbjct: 668 TPYKSSSVLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNTYSSVRQWDDA 727

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKN 593
             ++++M KN ++K  G SWI   N
Sbjct: 728 AALQELMNKNRVHKTPGHSWITYGN 752



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 210/437 (48%), Gaps = 48/437 (10%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           + G N+ TYL NR LDLY  FG  D   +LFDE+  ++  SWN  L    K  +L+ A +
Sbjct: 20  RTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACE 79

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSS 159
           VFD +PE DVVSWN+MIS     G+ + AL+++ +M   G  PS FT + +LS    V  
Sbjct: 80  VFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQD 139

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY-YAFGVFLNMEELDIISWNSLI 218
              G + HG  +++GL   N+ +GN+L+ MY K G +  Y   VF ++ E + +S+ ++I
Sbjct: 140 GVIGMRCHGVAVKTGLD-KNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVI 198

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK---------GKQVF 269
           SG         A+  F  M   G   D   +S +++        D          GKQ+ 
Sbjct: 199 SGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIH 258

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +L+++ GF+    + ++ +++++K   +  +  +F ++   +    N+MI+ +G+    +
Sbjct: 259 SLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSD 318

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            ++E  + M                                    SGF+ N V   S++ 
Sbjct: 319 KSIEYLKRMR----------------------------------DSGFEPNEVTCISILG 344

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
              ++G +++   IF  + +  + +WN ++ G +      E ++ F ++  + L PDR T
Sbjct: 345 ACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTT 404

Query: 450 LAAVLLACNYGGFVDKG 466
           L+ +L +C    F++ G
Sbjct: 405 LSVILSSCARLRFLEGG 421



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
           +SL +V   N+ +    K+G L  A  VF  M E D++SWN++IS     G+ E ALD +
Sbjct: 53  MSLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVY 112

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M   G+ P  +T++ V++AC+K+++   G +   ++VK G   N  V +A + +++KC
Sbjct: 113 GRMVGDGFLPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKC 172

Query: 295 NRLED-SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
             + D  VR+FE L   +      +IS   R      A+ +F+LM  + ++     LS +
Sbjct: 173 GFMVDYGVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNI 232

Query: 354 LS-SIPIPPVEH---------GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           LS S+P    +          G Q HS+A++ GF     + +SL+E+YAK   ++ +  I
Sbjct: 233 LSISVPREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELI 292

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++ + ++VSWN ++ G  Q  R+ ++++  + + + G  P+ +T  ++L AC   G V
Sbjct: 293 FTEMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDV 352

Query: 464 DKGMLVFSAMKE 475
           + G  +F+ + +
Sbjct: 353 ETGRRIFNTIPQ 364



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    S    +  HG + K G+ + +++     D+Y + G  +   Q FD + +KN + W
Sbjct: 515 CSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIW 574

Query: 85  NICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + G   +   D A+ ++ E+     +PD +++ S+++  +  G  D  LE+ S MQ 
Sbjct: 575 NEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQR 634

Query: 141 -QGVRP 145
             G+ P
Sbjct: 635 DHGIEP 640


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 267/483 (55%), Gaps = 6/483 (1%)

Query: 147 GFTFSILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           G+T S+L S + S     GKQ+H      G++  N  L   L+ +Y     L  A  +F 
Sbjct: 49  GYT-SLLQSCIDSKALNPGKQLHAQFYHLGIAY-NQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            + + ++  WN LI G   +G  + A+  ++ M   G  PD +T+  V+ AC+ L  + +
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+ +    +K G+  +  V +A ID+++KC  + D+ R+F+++   D  + N M++ Y +
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  + ++ L + M    +RPTE TL  V+SS   +  + +G + H    + GF SN  V
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L++MYAK GS+  +  +F +L ++ +VSWN I+ G   +G A   LD+F+++ +E  
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED- 345

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD IT   VL AC+ G  +D+G  +++ M  +YG+ P  +HY C+IDLL   GQL +A 
Sbjct: 346 RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAY 405

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           D+   M  +P   +W ++L +  I+G+V+L E   E++++L+      Y +L   YA  G
Sbjct: 406 DLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSG 465

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +WE + ++++VM    I K   CSWI +KN++Y F AG++ H     IY  L+ L   M 
Sbjct: 466 KWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMH 525

Query: 624 DEG 626
           + G
Sbjct: 526 EAG 528



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 202/434 (46%), Gaps = 41/434 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C+  K+ +  K +H   + LG   +  L  + + LY+                 
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYA----------------- 93

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                          S++L  A  +FD+IP+ ++  WN +I GYA  G  D A+ ++ KM
Sbjct: 94  --------------VSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKM 139

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G+RP  FT   +L   S +S+   G+ IH  +I+SG    ++ +G +LIDMY K G 
Sbjct: 140 LDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWE-RDLFVGAALIDMYAKCGC 198

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  +   D + WNS+++    +G+ + ++     M  +G  P E T+  VI++
Sbjct: 199 VMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISS 258

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
              +  L  G+++     + GF SN  V +A ID+++KC  ++ ++ LFE+L        
Sbjct: 259 SADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSW 318

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N +I+ Y  +G    AL+LF  M +ED RP   T   VL++      ++ G   +++ ++
Sbjct: 319 NAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVR 377

Query: 375 S-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETL 432
             G        + ++++    G +D + ++   +  K D   W  ++     +G      
Sbjct: 378 DYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAE 437

Query: 433 DVFEELLEEGLPPD 446
              E+L+E  L PD
Sbjct: 438 LALEKLIE--LEPD 449



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 160/344 (46%), Gaps = 5/344 (1%)

Query: 223 NSGYGELALDQFYSMRYSGYSPD-EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            S Y  LA  Q  S+      P   Y  + ++ +C   + L+ GKQ+ A    +G   N 
Sbjct: 23  QSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQ 82

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            + +  + L++  N L ++  LF+++ + +  + NV+I  Y   G  + A+ L+  ML  
Sbjct: 83  DLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDY 142

Query: 342 DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            +RP  FTL  VL +   +  +  G   H   IKSG++ +  V ++L++MYAK G +  +
Sbjct: 143 GLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDA 202

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             +F K+  RD V WN+++    QNG   E++ +  E+   G+ P   TL  V+ +    
Sbjct: 203 GRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADV 262

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             +  G  +       +G    ++    +ID+  + G +  A+ +   +  +   S W +
Sbjct: 263 ACLPYGREI-HGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVS-WNA 320

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           I+   A++G      ++ ++M     P  + +  +  A + RGR
Sbjct: 321 IITGYAMHGLAVGALDLFDKMRKEDRPDHITFVGVLAACS-RGR 363


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 173/599 (28%), Positives = 304/599 (50%), Gaps = 37/599 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IH  +   G   +T+L N  ++ Y   G   D  Q+F   P KN              
Sbjct: 41  QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKN-------------- 86

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            VVSW  +ISG A       A+++F +M +   +P+  T S +L
Sbjct: 87  -----------------VVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVL 129

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              ++       K +H   +R G    NV +  +L+DMY K G +  A  +F +M E ++
Sbjct: 130 PAFANLGLIRIAKSVHCFWVRGGFE-GNVFVETALVDMYSKFGCMGVARQLFESMSERNV 188

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWN+++SG  + G+ E A+D F  MR  G   D YTI  +I A   +  L  G  +   
Sbjct: 189 VSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGF 248

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            ++ G+ ++  + +A +D++   N ++D+ R+F ++   D A   +M++ +      + A
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 332 LELFQLMLR-EDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ++ F  ML  ++++     L  +LSS      ++ G + H++AIK+ F +N  V S++++
Sbjct: 309 IKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYA  G+++ +   F  + ++D+V WN ++ G   NG   + +D+F ++   GL PD  T
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             +VL AC++ G V +G+ +F  M +    +P  +HYAC+ID+L +AGQL  A    + M
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PFQP   ++ ++L A  I+G++KL   +++++ +++      Y LL+  YA+ G WE + 
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVK 548

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             +  +R   + K  G S I I   IYTF AGE  H    KI  +L+ L  +++  G V
Sbjct: 549 MTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYV 607



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 180/373 (48%), Gaps = 38/373 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           AK++H    + GF  + ++    +D+YS+FG      QLF+ + ++N +S          
Sbjct: 141 AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVS---------- 190

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-SI 152
                                WN+++SGY+  G+S+ A+++F+ M+ +G+    +T  S+
Sbjct: 191 ---------------------WNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSL 229

Query: 153 LLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           + +++S  C   G  IHG +IR+G   ++  +  +L+D+Y     +  A  VF  M   D
Sbjct: 230 IPASLSVGCLQVGTGIHGFIIRTGYE-NDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKD 288

Query: 211 IISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + +W  +++G  +  + + A+  F  M        D   +  ++++C+    L +G++V 
Sbjct: 289 VAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVH 348

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           AL++K  F +N  V SA ID+++ C  LED+ R F  +   D    N MI+  G  G+G 
Sbjct: 349 ALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGT 408

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFD-SNAVVASSL 387
            A++LF  M    + P E T   VL +      V  G Q     +K+  D  N    + +
Sbjct: 409 DAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACV 468

Query: 388 MEMYAKTGSIDSS 400
           +++  + G +D++
Sbjct: 469 IDILGRAGQLDAA 481



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 146/329 (44%), Gaps = 46/329 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI   LS         IHG + + G+    ++    +D+Y      DD  ++F E+  K+
Sbjct: 229 LIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKD 288

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             +W + L G     + D A+K F+                                 ++
Sbjct: 289 VAAWTLMLTGFSSGRHWDRAIKHFN---------------------------------KM 315

Query: 141 QGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            G++       +L+  +SS  H      G+++H   I++  + +N+ +G+++IDMY   G
Sbjct: 316 LGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFA-NNIFVGSAVIDMYANCG 374

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            L  A   F  M E D++ WN++I+G   +GYG  A+D F  M+ SG  PDE T   V+ 
Sbjct: 375 NLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLY 434

Query: 255 ACTKLRNLDKGKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDY 312
           AC+    + +G Q+F   VK    + N    +  ID+  +  +L+ +      +  + D+
Sbjct: 435 ACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDF 494

Query: 313 AVINVMIST---YGRYGFG-EVALELFQL 337
            V + ++     +G    G E++ ++F++
Sbjct: 495 DVYSTLLGACRIHGNIKLGHEISQKIFEM 523


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/580 (28%), Positives = 304/580 (52%), Gaps = 37/580 (6%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C+  +       IH H+ + GF+++ +L  + +  Y +FG + +           
Sbjct: 42  KILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETIN----------- 90

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                               A KVFD +PE +VVSW + ISGYA  G+   AL +FS+M 
Sbjct: 91  --------------------ARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMG 130

Query: 140 LQGVRPSGFTF-SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             GVR + FT+ S+L +     C   G QIHG  I+    + N+ + ++L+D++ K G +
Sbjct: 131 RAGVRANQFTYGSVLRACTGLRCLERGMQIHGC-IQKNRFIGNLFVQSALVDLHSKCGNM 189

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  M E D++SWN++I G     + + +   FYSM   G +PD +T+  V+ A 
Sbjct: 190 EDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKAS 249

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++  NL K  Q+  + +++GF S+  +  + ID ++K   ++ +  L++ + + D     
Sbjct: 250 SRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFT 309

Query: 317 VMISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            +++ Y R   +   AL+LF+ M    +   + T   +L+    I  +  G Q H++AIK
Sbjct: 310 AIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIK 369

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
                +    ++L++MYAK+G I+ +T  F ++ +++++SW +++ G  ++G   E + +
Sbjct: 370 YKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIAL 429

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           ++++  EGL P+ IT  ++L AC++ G   +G   F+ M  +Y ++P  EHY+C+IDL  
Sbjct: 430 YKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFA 489

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + GQL +A ++   M  +P  S+W +IL A +IYG + L E  A  ++ +   +   Y +
Sbjct: 490 RGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVV 549

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
           L   YA  G W+   R++ +M    + K+ G S I   N+
Sbjct: 550 LAGIYAASGSWDKACRMRNLMEYRSLKKIPGYSIIQSTNK 589


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/511 (31%), Positives = 282/511 (55%), Gaps = 13/511 (2%)

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S NL+ A  VF++I  P +  WNSMI GY+     D AL M+ +M+ +G  P  FTF  +
Sbjct: 52  SGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFV 111

Query: 154 L---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   S V+    G+ +H  ++++G  + +V    +L+ MY   G +  A  VF ++ + +
Sbjct: 112 LKACSLVNGYNLGQCVHNCIVKTGFEV-DVYAATALLQMYAACGDMEAALKVFDDIPKWN 170

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +++W SLI+GC ++     A+  +  M     +P+E T+  V+ AC + R+L+ G+ V  
Sbjct: 171 VVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHD 230

Query: 271 LSVKVG---FLSNS----IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            + ++G   F SNS    I+ +A +D+++KC  L+ +  LF ++   +    N MI  Y 
Sbjct: 231 RTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYN 290

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
           +YG    AL+LF  M      P + T  CV+ +   +  +  G   H+   K+    +  
Sbjct: 291 QYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTA 350

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE- 441
           + ++L++MYAK+G  + + ++F +L K+D+ +W ++++GL  +G   E L  F+++ E+ 
Sbjct: 351 IGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDT 410

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
            L PD IT   VL AC++ G V+ G   F +MK  +G+ P  +HY C++DLL +AG+LG+
Sbjct: 411 ALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGE 470

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A  +   MP +P  +IW ++L    IY ++ + + V  R+ +L++     Y LL+  YA 
Sbjct: 471 AERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAG 530

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
             RWE +   +++M++  I K  G S + +K
Sbjct: 531 ACRWEEVKMARELMKERKIQKSLGHSSVEMK 561



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 189/387 (48%), Gaps = 13/387 (3%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM--YGKLGVLYYAFGVFLNMEELD 210
           LL    +    K++HG MI + + + +V+  + L+D   Y   G L YA  VF  ++   
Sbjct: 11  LLEKCKTMAELKRLHGLMITTSV-IQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPS 69

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +  WNS+I G   S   + AL  +  MR  GY+PD +T   V+ AC+ +   + G+ V  
Sbjct: 70  LYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHN 129

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             VK GF  +    +A + +++ C  +E ++++F+ + +W+      +I+          
Sbjct: 130 CIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSE 189

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDS-------NAV 382
           A+ +++ M    + P E T+  VL +      +  G   H    + G D        N +
Sbjct: 190 AVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVI 249

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           +A+++++MYAK GS+ ++ ++F K+  R+LV+WN+++    Q G+A E LD+F ++   G
Sbjct: 250 LATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAG 309

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
             PD+ T   V+ AC + G +  G     A   +  +         ++D+  ++G   +A
Sbjct: 310 FDPDKATFLCVIGACAHLGALVSGQ-ALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERA 368

Query: 503 IDITSTMPFQPGCSIWESILRASAIYG 529
             + S +  +   + W S++   A++G
Sbjct: 369 QQVFSELQ-KKDVTAWTSLIIGLAMHG 394



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 186/415 (44%), Gaps = 46/415 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C     ++  + +H  + K GF    Y     L +Y+  G  +  L++FD+IP+ N
Sbjct: 111 VLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWN 170

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ++W   + G + +D    A++V+ +                               M+L
Sbjct: 171 VVAWTSLIAGCISNDCPSEAVRVYKD-------------------------------MEL 199

Query: 141 QGVRPSGFTF-SILLSTVSSA--CHGKQIHGSMIRSGL------SLSNVVLGNSLIDMYG 191
             V P+  T  ++L++   S     G+ +H    + GL      S  NV+L  +++DMY 
Sbjct: 200 WSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYA 259

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  A  +F  M   ++++WNS+I      G    ALD F  MR +G+ PD+ T   
Sbjct: 260 KCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLC 319

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           VI AC  L  L  G+ + A   K     ++ + +A +D+++K    E + ++F +L + D
Sbjct: 320 VIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKD 379

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHG-SQ 367
                 +I     +G GE AL  F+ M +ED  + P E T   VLS+   +  VE G + 
Sbjct: 380 VTAWTSLIIGLAMHGHGEEALTFFKKM-QEDTALIPDEITYIGVLSACSHVGKVEDGKNH 438

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG 421
           F SM    G +        ++++ ++ G +  +  +  K+  + +   W+ ++ G
Sbjct: 439 FISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNG 493


>gi|297824663|ref|XP_002880214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326053|gb|EFH56473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 585

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 300/567 (52%), Gaps = 42/567 (7%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           FD  K  HG + K G     +  N+ L  Y++    DD  +LFDE+  +N ++WNI + G
Sbjct: 53  FD-VKQKHGFMVKQGTYNSLFFQNKLLQAYTKIREFDDADKLFDEMLVRNIVTWNILIHG 111

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           ++  D  DT  +                    A  G+   +  + S++ L  V   G   
Sbjct: 112 VIHRDG-DTNHR--------------------AHLGFCYLSRSLLSEVILDHVSFIGL-- 148

Query: 151 SILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            I L T S+    G Q+H  +++ GL  SN  L  SL+D YGK G++  A  VF  +   
Sbjct: 149 -IRLCTDSTNVEAGNQLHSLIVKQGLE-SNCFLSTSLVDFYGKCGLIGEARQVFEAVLVR 206

Query: 210 DIISWNSLIS-----GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           D++ WN+L+S     G  +  +G L L    S   +G++ D++T+S +++AC     + +
Sbjct: 207 DLVLWNALVSSYVLNGMIDEAFGLLKL---MSSEKNGFTGDDFTLSSLLSAC----GIKQ 259

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GKQ+ A+  K+ +L +  V +A +++++K N + D+ + FE +   +    N MI  +G+
Sbjct: 260 GKQIHAIVFKLSYLFDIPVATALVNMYAKSNHMSDAHKCFESMVVRNIVSWNAMIVGFGQ 319

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
            G G  A+ LF  MLRE+++P E T + VL S      +    Q  +M  K G      V
Sbjct: 320 NGEGREAMRLFGQMLRENLQPDELTFASVLCSCTKFSAIWEIKQVQAMVTKKGSAEFLSV 379

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           A+SL+  Y++TG++  +   F  + + DLVSW +++  L  +G A E+L +FE +L++ L
Sbjct: 380 ANSLISSYSRTGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLRIFESMLQK-L 438

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD+IT   VL AC++GG V +G+  F  M E Y + P EEHY C+IDLL +AG + +A 
Sbjct: 439 QPDKITFLEVLSACSHGGLVQEGLRCFKRMTEVYKIEPEEEHYTCLIDLLGRAGFIDEAF 498

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           D+  +MP +P      +   A  I+  ++  +  A+++++++   P+ YS+++ AYA  G
Sbjct: 499 DVLKSMPTEPSTHALAAFTGACNIHEKIESMKWGAKKLLEIEPSKPVNYSIMSNAYASEG 558

Query: 564 RWEAIVRVKKVMRKNGIN-KVTGCSWI 589
            W     ++K  R+N  N K  GCSW+
Sbjct: 559 HWNQAALLRKKERRNCYNPKTLGCSWL 585



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 42/359 (11%)

Query: 4   YLKKAHVNKASLSYCS--QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           YL ++ +++  L + S   LI  C    + +    +H  + K G  ++ +L    +D Y 
Sbjct: 129 YLSRSLLSEVILDHVSFIGLIRLCTDSTNVEAGNQLHSLIVKQGLESNCFLSTSLVDFYG 188

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
           + G   +  Q+F+ +  +                               D+V WN+++S 
Sbjct: 189 KCGLIGEARQVFEAVLVR-------------------------------DLVLWNALVSS 217

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTF-SILLSTVSSAC---HGKQIHGSMIRSGLSL 177
           Y   G  D   E F  ++L     +GFT     LS++ SAC    GKQIH  + +    L
Sbjct: 218 YVLNGMID---EAFGLLKLMSSEKNGFTGDDFTLSSLLSACGIKQGKQIHAIVFKLSY-L 273

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            ++ +  +L++MY K   +  A   F +M   +I+SWN++I G   +G G  A+  F  M
Sbjct: 274 FDIPVATALVNMYAKSNHMSDAHKCFESMVVRNIVSWNAMIVGFGQNGEGREAMRLFGQM 333

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
                 PDE T + V+ +CTK   + + KQV A+  K G      V ++ I  +S+   L
Sbjct: 334 LRENLQPDELTFASVLCSCTKFSAIWEIKQVQAMVTKKGSAEFLSVANSLISSYSRTGNL 393

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +++  F  +   D      +I     +GF E +L +F+ ML++ ++P + T   VLS+
Sbjct: 394 SEALLCFHSIREPDLVSWTSVIGALASHGFAEESLRIFESMLQK-LQPDKITFLEVLSA 451



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 51/193 (26%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C  F +    K +   + K G      + N  +  YSR G   + L  F  I + + +SW
Sbjct: 352 CTKFSAIWEIKQVQAMVTKKGSAEFLSVANSLISSYSRTGNLSEALLCFHSIREPDLVSW 411

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                           S+I   AS G+++ +L +F  M LQ ++
Sbjct: 412 -------------------------------TSVIGALASHGFAEESLRIFESM-LQKLQ 439

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG-----------NSLIDMYGKL 193
           P   TF  +LS  S        HG +++ GL     +               LID+ G+ 
Sbjct: 440 PDKITFLEVLSACS--------HGGLVQEGLRCFKRMTEVYKIEPEEEHYTCLIDLLGRA 491

Query: 194 GVLYYAFGVFLNM 206
           G +  AF V  +M
Sbjct: 492 GFIDEAFDVLKSM 504


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 309/634 (48%), Gaps = 75/634 (11%)

Query: 3   SYLKKAHVNKASLSYC----SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLD 58
           S+   AH N AS S      S LI +C+  KS      I  H  K GF  H  LGN+ +D
Sbjct: 63  SFFATAH-NGASFSESLQLYSSLIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLID 119

Query: 59  LYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSM 118
            Y                               LK  ++  A KVFDE+P   +V+WNSM
Sbjct: 120 AY-------------------------------LKCGSVVYARKVFDEVPHRHIVAWNSM 148

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGL 175
           I+ Y   G S  A++++ +M   G+ P  FTFS +    S       G++ HG  +  G+
Sbjct: 149 IASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGV 208

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
            +SNV +G++L+DMY K G +  A  V   +   D++ + +LI G  + G    +L  F 
Sbjct: 209 GVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFR 268

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
           +M   G   +EYT+S V+  C  L +L  G+ +  L VK G                   
Sbjct: 269 NMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAG------------------- 309

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            LE +V        W   ++ ++     + G  E+AL  F+ MLR  I P  FTLS VL 
Sbjct: 310 -LESAVT-------WTSVIVGLV-----QNGREEIALLKFRQMLRSSITPNSFTLSSVLR 356

Query: 356 SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +   +  +E G Q H++ +K G D +  V ++L++ Y K GS + +  +F  L + D+VS
Sbjct: 357 ACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVS 416

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
            N+++    QNG   E L +F  + + GL P+ +T   VL ACN  G +++G  +FS+ +
Sbjct: 417 VNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSAR 476

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
               +   ++HYAC++DLL +AG+L +A  + + +       IW ++L A  I+GDV++ 
Sbjct: 477 NSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISD-VVIWRTLLSACRIHGDVEMA 535

Query: 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
           + V  R++DL       + LL+  YA  G W  ++ +K  MR+  + K    SW+ ++  
Sbjct: 536 KRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVERE 595

Query: 595 IYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           I+TF AG+  H   + I   L  L  ++++ G V
Sbjct: 596 IHTFMAGDWSHPNFRDIREKLEELIEKVKELGYV 629


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 177/624 (28%), Positives = 310/624 (49%), Gaps = 60/624 (9%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K +HG+  ++G +  T+  N  + +Y++ G  DD   LF+    +             
Sbjct: 215 LGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDR------------- 260

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                             D+VSWN+MIS ++       AL  F  M L+GV   G T + 
Sbjct: 261 ------------------DMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIAS 302

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   S       GK+IH  ++R+   + N  +G++L+DMY     +     VF ++   
Sbjct: 303 VLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 362

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            I  WN++ISG   +G  E AL  F  M + +G  P+  T++ V+ AC         + +
Sbjct: 363 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESI 422

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY---GRY 325
              +VK+GF  +  V +A +D++S+  +++ S  +F+ ++  D    N MI+ Y   GRY
Sbjct: 423 HGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRY 482

Query: 326 GFGEVALELFQLMLREDI--------------RPTEFTLSCVLSS-IPIPPVEHGSQFHS 370
               V L   Q M                   +P   TL  VL     +  +  G + H+
Sbjct: 483 SNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHA 542

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            AI++   S+  V S+L++MYAK G ++ S  +F ++  +++++WN ++M    +G+  E
Sbjct: 543 YAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEE 602

Query: 431 TLDVFEELLEEG-----LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
            L++F+ ++ E        P+ +T   V  AC++ G + +G+ +F  MK ++GV P  +H
Sbjct: 603 ALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDH 662

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQ-PGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           YAC++DLL +AGQL +A ++ +TMP +      W S+L A  I+ +V+L E  A+ ++ L
Sbjct: 663 YACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHL 722

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +      Y LL+  Y+  G W   + V+K MR+ G+ K  GCSWI  ++ ++ F AG++ 
Sbjct: 723 EPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVS 782

Query: 605 HHGGQKIYLVLRLLTWEMEDEGCV 628
           H   ++++  L  L+ +M  EG V
Sbjct: 783 HPQSEQLHGFLETLSEKMRKEGYV 806



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/461 (29%), Positives = 221/461 (47%), Gaps = 44/461 (9%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVFD I + D VSWNS I+        + ALE F  MQ++ +  S FT    L +V+ AC
Sbjct: 149 KVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFT----LVSVALAC 204

Query: 162 H----------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                      GKQ+HG  +R G         N+L+ MY KLG +  +  +F +  + D+
Sbjct: 205 SNLGVMHGLRLGKQLHGYSLRVG--DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDM 262

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWN++IS    S     AL  F  M   G   D  TI+ V+ AC+ L  LD GK++ A 
Sbjct: 263 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 322

Query: 272 SVKVG-FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            ++    + NS V SA +D++  C ++E   R+F+ +      + N MIS Y R G  E 
Sbjct: 323 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 382

Query: 331 ALELFQLMLR-EDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           AL LF  M++   + P   T++ V+ + +      +    H  A+K GF  +  V ++LM
Sbjct: 383 ALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALM 442

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-------- 440
           +MY++ G +D S  IF  ++ RD VSWNT++ G   +GR +  L +  E+          
Sbjct: 443 DMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVK 502

Query: 441 -------EGLP--PDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYG--VMPGEEHYAC 488
                  +G P  P+ ITL  VL  C     + KG  + + A++      +  G    + 
Sbjct: 503 KDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVG----SA 558

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           ++D+  + G L  +  + + MP       W  ++ A  ++G
Sbjct: 559 LVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHG 598



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 176/359 (49%), Gaps = 10/359 (2%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GK 164
           P     SW   +           A+  + +M + G RP  F F  +L  VS       G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           QIH + ++ G   S+V + N+L++MYGK G +     VF  + + D +SWNS I+     
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKL---RNLDKGKQVFALSVKVGFLSNS 281
              E AL+ F +M+        +T+  V  AC+ L     L  GKQ+   S++VG    +
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGD-QKT 231

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
              +A + +++K  R++DS  LFE     D    N MIS++ +      AL  F+LM+ E
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-FDSNAVVASSLMEMYAKTGSIDS 399
            +     T++ VL +   +  ++ G + H+  +++     N+ V S+L++MY     ++S
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLAC 457
              +F  +  R +  WN ++ G  +NG   + L +F E+++  GL P+  T+A+V+ AC
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 145/275 (52%), Gaps = 6/275 (2%)

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT-I 288
           A+  +  M  SG  PD +    V+ A + L++L  G+Q+ A +VK G+ S+S+ ++ T +
Sbjct: 76  AISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLV 135

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
           +++ KC  + D  ++F+++   D    N  I+   R+   E ALE F+ M  E++  + F
Sbjct: 136 NMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSF 195

Query: 349 TLSCVLSSIPIPPVEHG----SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
           TL  V  +     V HG     Q H  +++ G D      ++LM MYAK G +D S  +F
Sbjct: 196 TLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALF 254

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
                RD+VSWNT++   +Q+ R +E L  F  ++ EG+  D +T+A+VL AC++   +D
Sbjct: 255 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 314

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
            G  + + +     ++      + ++D+ C   Q+
Sbjct: 315 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 349



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 143/317 (45%), Gaps = 35/317 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C+  ++F   ++IHG+  KLGF    Y+ N  +D+YSR G  D    +FD +  
Sbjct: 404 ASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEV 463

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SWN  + G + S     AL +  E+   +              G            
Sbjct: 464 RDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGP---------- 513

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                +P+  T   +L   + +++   GK+IH   IR+ L+ S++ +G++L+DMY K G 
Sbjct: 514 ----YKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLA-SDITVGSALVDMYAKCGC 568

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-----RYSGYSPDEYTIS 250
           L  +  VF  M   ++I+WN LI  C   G GE AL+ F +M     R     P+E T  
Sbjct: 569 LNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFI 628

Query: 251 IVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
            V  AC+    + +G  +F  +    G    S   +  +DL  +  +LE++         
Sbjct: 629 TVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA--------- 679

Query: 310 WDYAVINVMISTYGRYG 326
             Y ++N M + + + G
Sbjct: 680 --YELVNTMPAEFDKVG 694


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 291/552 (52%), Gaps = 15/552 (2%)

Query: 93  KSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           K + ++ AL V +   +   +V ++N++ISG+   G     L  + +M+  GV P  +TF
Sbjct: 4   KCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTF 63

Query: 151 SIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
             L   L  V      K+IHG + + GL L ++ +G+SL+  Y K  ++  A  +F  + 
Sbjct: 64  PCLIKGLCEVMEVFQVKKIHGLVRKLGLDL-DMYVGSSLVSSYLKSELMKEARELFDEIP 122

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + D++ WNS+++G    G  + AL     M   G    ++T+S V++      + D G+ 
Sbjct: 123 DRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRL 182

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           V    +K+GF S   V +A ID++ KC  + D++ +FE ++  D    N ++S       
Sbjct: 183 VHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSD 242

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS------- 379
            +  L LF  ML + ++    T++ +L +   +  + HG + H   I +GF         
Sbjct: 243 HDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENM 302

Query: 380 -NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            N    ++LM+MYAK GS+  +  +F  +  RD  SWN ++MG   +G   E L +F ++
Sbjct: 303 YNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDM 362

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            + GL P+ IT   VLLAC++ GF+ +G+     M+ ++GV+P  +HY C+ID+L +AGQ
Sbjct: 363 CKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQ 422

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L +A  +  TMP Q    +W ++L A  +YG+V L E  A+++ +L       Y L++ A
Sbjct: 423 LEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNA 482

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           Y   GR++ ++ ++  MR+  + K  GCSWI +KN + TF  G+  H   + IY  L LL
Sbjct: 483 YVAAGRYQEVLDIRHTMRQQDVKKTPGCSWIELKNGMNTFINGDRNHPEARLIYPELHLL 542

Query: 619 TWEMEDEGCVYL 630
              + + G V L
Sbjct: 543 AAHIREHGYVPL 554



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 143/502 (28%), Positives = 222/502 (44%), Gaps = 84/502 (16%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IHG + KLG +   Y+G+  +  Y                               LKS
Sbjct: 80  KKIHGLVRKLGLDLDMYVGSSLVSSY-------------------------------LKS 108

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           + +  A ++FDEIP+ DVV WNSM++GYA  G  D AL +  +M  +GV  S FT S +L
Sbjct: 109 ELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVL 168

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  +      +G+ +HG MI+ G   S V + N+LIDMYGK   +  A  +F  M E DI
Sbjct: 169 SVFAGRGDFDNGRLVHGFMIKMGFD-SCVSVCNALIDMYGKCRCVVDALEIFETMNEKDI 227

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SWNS++S        +  L  F  M   G   D  TI+ ++ AC+ L  L  G+++   
Sbjct: 228 FSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGY 287

Query: 272 SVKVGFLS--------NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            +  GF+         N   ++A +D+++KC  + D+  +F  +   D A  N+MI  YG
Sbjct: 288 MIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYG 347

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
            +G+G  AL +F  M +  ++P E T   VL +                  +GF S  + 
Sbjct: 348 MHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACS---------------HAGFISQGI- 391

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
              L EM  K G + +       +D                 GRA +  + ++  +   +
Sbjct: 392 -KFLGEMELKHGVVPTIQHYTCVIDML---------------GRAGQLEEAYKLAVTMPI 435

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-EHYACIIDLLCQAGQLGKA 502
             + +   A+L AC   G VD   L   A ++ + + P    +Y  + +    AG+  + 
Sbjct: 436 QTNPVVWRALLAACQLYGNVD---LAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEV 492

Query: 503 IDITSTMPFQ-----PGCSIWE 519
           +DI  TM  Q     PGCS  E
Sbjct: 493 LDIRHTMRQQDVKKTPGCSWIE 514



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 42/284 (14%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           FD  + +HG + K+GF++   + N  +D+Y +     D L++F+ + +K+  SW      
Sbjct: 177 FDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSW------ 230

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                    NS++S    C   D  L +F +M   GV+    T 
Sbjct: 231 -------------------------NSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTI 265

Query: 151 SILL---STVSSACHGKQIHGSMIRSGL-------SLSNVVLGNSLIDMYGKLGVLYYAF 200
           + +L   S +++  HG++IHG MI +G        ++ N+   N+L+DMY K G +  A 
Sbjct: 266 TTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAG 325

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF NM   D  SWN +I G    GYG  AL  F  M  SG  P+E T   V+ AC+   
Sbjct: 326 MVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAG 385

Query: 261 NLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            + +G +    + +K G +      +  ID+  +  +LE++ +L
Sbjct: 386 FISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKL 429


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 178/575 (30%), Positives = 295/575 (51%), Gaps = 45/575 (7%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  ++ Y + G  ++ L++F+ + +++ +SW+  + GL +   +  A  +FD +P+ +VV
Sbjct: 172 NALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDRNVV 231

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVSSA---CHGKQIHGS 169
           SW++MI GY   G+      +F  M+ +G V  +  T +I+     +      G QIHG 
Sbjct: 232 SWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSEGMQIHGL 291

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
           + R G    NV L NS+I MY  LG    A  VF  + + DI++WNSLISG  ++   E 
Sbjct: 292 VSRLGFEFDNV-LSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIHNNEVEA 350

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A   F      G  P +  IS                                  +A I 
Sbjct: 351 AYRVF------GRMPVKDVIS---------------------------------WTAMIA 371

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
            FSK  R+E+++ LF  L   D  V   +IS +      E AL  +  M+ E  +P   T
Sbjct: 372 GFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLT 431

Query: 350 LSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           +S VL++         G Q H+  +K   + N  + +SL+  Y+K+G++  +  IF+ + 
Sbjct: 432 ISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVI 491

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           + +++S+N+I+ G  QNG   E L +++++  EG  P+ +T  AVL AC + G VD+G  
Sbjct: 492 EPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWN 551

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
           +F+ MK  YG+ P  +HYAC++D+L +AG L +AID+  +MPF+P   +W +IL AS  +
Sbjct: 552 IFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASKTH 611

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
             + L +  A+R+ DL+  +  PY +L+  Y+  G+      VK      GI K  GCSW
Sbjct: 612 LRLDLAKLAAQRITDLEPKNATPYVVLSNMYSAAGKKIDGDLVKMAKNLKGIKKSPGCSW 671

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           I +KN+++ F AG+  H   ++I   +  +  EM+
Sbjct: 672 ITMKNKVHLFLAGDQSHGSIEEIKTTILTMDREMQ 706



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 154/306 (50%), Gaps = 36/306 (11%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IHG + +LGF     L N  + +YS  G +D   ++F  +  K+ ++WN  + G + ++ 
Sbjct: 288 IHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIHNNE 347

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF--------------------- 135
           ++ A +VF  +P  DV+SW +MI+G++  G  + A+E+F                     
Sbjct: 348 VEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNN 407

Query: 136 ----------SKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVL 182
                     ++M  +G +P+  T S +L+  ++      G QIH  +++  L   N+ +
Sbjct: 408 NEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEY-NLSI 466

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
            NSLI  Y K G +  A+ +FL++ E ++IS+NS+ISG   +G+G+ AL  +  M+  G+
Sbjct: 467 QNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGH 526

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            P+  T   V++ACT    +D+G  +F  +    G    +   +  +D+  +   L++++
Sbjct: 527 EPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAI 586

Query: 302 RLFEQL 307
            L   +
Sbjct: 587 DLIRSM 592


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/604 (28%), Positives = 313/604 (51%), Gaps = 40/604 (6%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C S  + +    +HG++ + GF     + N  L +Y+                    
Sbjct: 157 IHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYA-------------------- 196

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                        ++++ A ++FDE+ E DV+SW+ MI GY   G +  AL++F +M   
Sbjct: 197 ------------DNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSN 244

Query: 142 G-VRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             +   G T   +L   ++      G+ +HG +I  GL   ++ +GNS+IDMY K     
Sbjct: 245 ASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDY-DLFVGNSIIDMYSKCDDHE 303

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            AF  F  M   + +SWNS+ISG   +     AL  FYSM  +G+  DE T+  ++ +C 
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +  + K + ++ ++ G+  N  V+++ ID +SKC+ +E + +LF++L   D    + 
Sbjct: 364 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSA 423

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSG 376
           MI+ +   G  + A+ LFQ M +   +P   T+  +L +  +      S++ H +AI+ G
Sbjct: 424 MIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRG 483

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             +   V +++++MYAK G I  S + F ++ ++++VSW  ++     NG A + L +  
Sbjct: 484 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 543

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E+   GL P+ +T  +VL AC++GG V++G+  F  M +++GV PG EHY+C++D+L +A
Sbjct: 544 EMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRA 603

Query: 497 GQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           G+L  A+++   MP   + G  +W ++L A    G+ +L    A R+++L+  S   Y L
Sbjct: 604 GKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFL 663

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
            +  YA  G W    R++ +++  G+  V G S + ++++ + F AG+  H    +I+ V
Sbjct: 664 ASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGV 723

Query: 615 LRLL 618
           +  L
Sbjct: 724 VEQL 727



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/537 (25%), Positives = 241/537 (44%), Gaps = 55/537 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +KKA       +    ++  C S       K+IH  L K GF++ T  GN  LD Y + G
Sbjct: 40  MKKAGAQLTDPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTG 98

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             D  L +FD +  ++ +SWNI                                I G+ S
Sbjct: 99  ALDSALFVFDSMRSRDSVSWNIM-------------------------------IHGHLS 127

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G SD  L  F + ++    P+  T  + +    S      G ++HG +IRSG  L    
Sbjct: 128 RGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGF-LDIPS 186

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + NSL+ MY     +  A  +F  M E D+ISW+ +I G   +G  ++AL  F  M  + 
Sbjct: 187 VQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNA 245

Query: 242 -YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
               D  T+  V+ AC    ++  G+ V  + +  G   +  V ++ ID++SKC+  E +
Sbjct: 246 SIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESA 305

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-- 358
            + F ++   +    N +IS   R      AL LF  M +   R  E TL  +L S    
Sbjct: 306 FKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYF 365

Query: 359 IPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
           + P +   +F HS+ I+ G++ N  V +SL++ Y+K   I+ + ++F +L  +D VSW+ 
Sbjct: 366 VDPFQ--CKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSA 423

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK-----GMLVFSA 472
           ++ G    G+  E + +F+E+ +    P+ +T+ ++L A +    + +     G+ +   
Sbjct: 424 MIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRG 483

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           +  E  V         I+D+  + G++G +      +P +   S W +++ A  + G
Sbjct: 484 LAAEVAV------GTAILDMYAKCGEIGLSRKAFDQIPEKNIVS-WGAMIAACGMNG 533



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 182/365 (49%), Gaps = 17/365 (4%)

Query: 110 PDVVSWNSMISGYASCGYSDY--ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC------ 161
           P + +WN  I    +  + D   A   + +M+  G +    T   L+ ++  AC      
Sbjct: 10  PKLPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQ---LTDPTLVHSILKACSSLPVR 66

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           HGK IH S+++ G   S    GNS++D Y K G L  A  VF +M   D +SWN +I G 
Sbjct: 67  HGKSIHASLLKQGFD-SLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGH 125

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            + G  +  L  F   R   + P+  T+ + I+AC  L  +++G ++    ++ GFL   
Sbjct: 126 LSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIP 185

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF-QLMLR 340
            V ++ + +++  N +E +  LF+++   D    +VMI  Y + G  ++AL+LF ++   
Sbjct: 186 SVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSN 244

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
             I     T+  VL +      +  G   H + I  G D +  V +S+++MY+K    +S
Sbjct: 245 ASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHES 304

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           + + F ++  R+ VSWN+I+ GL +  + +E L +F  + + G   D +TL  +L +C Y
Sbjct: 305 AFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKY 364

Query: 460 GGFVD 464
             FVD
Sbjct: 365 --FVD 367



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 4/166 (2%)

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPP 361
           L  +L  W+  + +   ST  ++     A   +  M +   + T+ TL   +L +    P
Sbjct: 8   LAPKLPNWNLGIKD---STNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLP 64

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           V HG   H+  +K GFDS     +S+++ Y KTG++DS+  +F  +  RD VSWN ++ G
Sbjct: 65  VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHG 124

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
               G + + L  F +       P+  TL   + AC   G +++G+
Sbjct: 125 HLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGL 170


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 295/547 (53%), Gaps = 13/547 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           L+   +  A KVFDE+ E DV +WN+M+SG      +  A+ +F +M  +GV     T S
Sbjct: 114 LRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVS 173

Query: 152 ILLSTVSSACHGKQI-----HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            +L        G Q+     H   ++ GL    + + N+LID+YGKLG+L  A  VF  M
Sbjct: 174 SVLPMC--VLLGDQVLALVMHVYAVKHGLD-KELFVCNALIDVYGKLGMLEEAQCVFHGM 230

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           E  D+++WNS+ISGC   G    AL  F  MR SG SPD  T+  + +A  +  +    K
Sbjct: 231 ECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAK 290

Query: 267 QVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            +    ++ G+  + I+  +A +D+++K + +E + R+F+ +   D    N +I+ Y + 
Sbjct: 291 SLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQN 350

Query: 326 GFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
           G    A+E +  M + E ++  + T   VL +   +  ++ G + H+++IK G + +  V
Sbjct: 351 GLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYV 410

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            + L+++YAK G +  +  +F K+ +R    WN I+ GL  +G  AE L +F  + +EG+
Sbjct: 411 GTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGI 470

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD +T  ++L AC++ G VD+G   F  M+  Y ++P  +HYAC+ D+L +AGQL +A 
Sbjct: 471 KPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAF 530

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           +    MP +P  ++W ++L A  I+G+V++ +  ++ + +L   +   Y L++  YA  G
Sbjct: 531 NFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVG 590

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ--HHGGQKIYLVLRLLTWE 621
           +W+ +  V+ ++R+  + K  G S I +K  +  F +G     H   ++I   LR L  +
Sbjct: 591 KWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAK 650

Query: 622 MEDEGCV 628
           +   G V
Sbjct: 651 IRSVGYV 657



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 197/394 (50%), Gaps = 15/394 (3%)

Query: 144 RPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           RP GFTF  L+    S     Q+H   +R GL   +V    SL+  Y + G +  A+ VF
Sbjct: 67  RPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVF 126

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M E D+ +WN+++SG   +     A+  F  M   G + D  T+S V+  C  L    
Sbjct: 127 DEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL---- 182

Query: 264 KGKQVFAL-----SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
            G QV AL     +VK G      V +A ID++ K   LE++  +F  ++  D    N +
Sbjct: 183 -GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ-FHSMAIKSGF 377
           IS   + G    AL++FQ M    + P   TL  + S+I        ++  H   ++ G+
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 378 DSNAVVA-SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           D + ++A +++++MYAK  +I+++  +F  +  +D VSWNT++ G  QNG A E ++ + 
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 437 ELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            + + EGL   + T  +VL A ++ G + +GM +  A+  + G+        C+IDL  +
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMH-ALSIKIGLNVDVYVGTCLIDLYAK 420

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            G+L +A+ +   MP +     W +I+    ++G
Sbjct: 421 CGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHG 453



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 189/408 (46%), Gaps = 38/408 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C+       A  +H +  K G +   ++ N  +D+Y + G  ++   +F  +  
Sbjct: 173 SSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMEC 232

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++WN                               S+ISG    G +  AL+MF  M
Sbjct: 233 RDLVTWN-------------------------------SIISGCEQRGQTAAALKMFQGM 261

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +  GV P   T   L S ++    G   K +H  ++R G  + +++ GN+++DMY KL  
Sbjct: 262 RGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSN 321

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           +  A  +F +M   D +SWN+LI+G   +G    A++++  M ++ G    + T   V+ 
Sbjct: 322 IEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLP 381

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A + L  L +G ++ ALS+K+G   +  V +  IDL++KC +L +++ LFE++ R     
Sbjct: 382 AYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP 441

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMA 372
            N +IS  G +G G  AL LF  M +E I+P   T   +L++      V+ G S F  M 
Sbjct: 442 WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQ 501

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +       A   + + +M  + G +D +      +  K D   W  ++
Sbjct: 502 VTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALL 549



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + I+ N  +    K  N++ A ++FD +P  D VSWN++I+GY   G ++ A+E +  MQ
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364

Query: 140 L-QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++    TF  +L   S + +   G ++H   I+ GL++ +V +G  LID+Y K G 
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV-DVYVGTCLIDLYAKCGK 423

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F  M       WN++ISG    G+G  AL  F  M+  G  PD  T   ++ A
Sbjct: 424 LAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAA 483

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    +D+G+  F  + V    +  +   +   D+  +  +L+++    + +  + D A
Sbjct: 484 CSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSA 543

Query: 314 VINVMIST---YGRYGFGEVALE-LFQL 337
           V   ++     +G    G+VA + LF+L
Sbjct: 544 VWGALLGACRIHGNVEMGKVASQNLFEL 571



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 51/205 (24%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H    K+G N   Y+G   +DLY++ G   + + LF+++P+++   W            
Sbjct: 395 MHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPW------------ 442

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                              N++ISG    G+   AL +FS+MQ +G++P   TF  LL+ 
Sbjct: 443 -------------------NAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAA 483

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLIDMYGKLGVLYYAFGVFLN 205
            S        H  ++  G S  +V+               + DM G+ G L  AF    N
Sbjct: 484 CS--------HAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQN 535

Query: 206 ME-ELDIISWNSLISGCFNSGYGEL 229
           M  + D   W +L+  C   G  E+
Sbjct: 536 MPIKPDSAVWGALLGACRIHGNVEM 560


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 180/630 (28%), Positives = 307/630 (48%), Gaps = 70/630 (11%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           + ID+C +       K IH H+ +       Y  ++ L  Y+              I   
Sbjct: 77  EFIDQCTNTMQL---KQIHAHMLRTSRFCDPYTASKLLTAYA--------------ISSC 119

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           +C+ +               A  VF++IP+P++  WN++I GYAS      +  +F  M 
Sbjct: 120 SCLIY---------------AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHML 164

Query: 140 LQGVR-PSGFTFSILLSTVS--SACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                 P+ FTF  L    S     H G  +HG +I++ LS S++ + NSLI+ YG  G 
Sbjct: 165 HSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLS-SDLFILNSLINFYGSSGA 223

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF NM   D++SWN++I+     G  + AL  F  M      P+  T+  V++A
Sbjct: 224 PDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSA 283

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY--- 312
           C K  +L+ G+ + +     GF  + I+ +A +D++ KC  + D+  LF ++   D    
Sbjct: 284 CAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSW 343

Query: 313 ----------------------------AVINVMISTYGRYGFGEVALELF-QLMLREDI 343
                                       A  N +IS Y + G   VAL LF ++ L +D 
Sbjct: 344 TTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDA 403

Query: 344 RPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           +P E TL C L +S  +  ++ G   H    K   + N  +A+SL++MYAK G+++ + E
Sbjct: 404 KPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAME 463

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  ++++D+  W+ ++  L   G+    LD+F  +LE  + P+ +T   +L ACN+ G 
Sbjct: 464 VFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGL 523

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           V++G  +F  M+  YG++P  +HY C++D+  +AG L KA      MP  P  ++W ++L
Sbjct: 524 VNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALL 583

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A + +G+V+L E   + +++L+  +   + LL+  YA  G WE +  ++K+MR + + K
Sbjct: 584 GACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKK 643

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
              CS I +   ++ F  G+  H   QKIY
Sbjct: 644 EPWCSSIDVNGIVHEFLVGDNSHPFSQKIY 673



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 166/349 (47%), Gaps = 16/349 (4%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C++ ID        +F + I  ++   GF  H  L N  LD+Y + G  +D   LF+
Sbjct: 281 LSACAKKID-------LEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFN 333

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           ++ +K+ +SW   L G  K  N D A  +FD +P     +WN++IS Y   G    AL +
Sbjct: 334 KMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSL 393

Query: 135 FSKMQL-QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           F +MQL +  +P   T    L   + + +   G  IH  + +  ++L N  L  SL+DMY
Sbjct: 394 FHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINL-NCHLATSLLDMY 452

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G L  A  VF  +E  D+  W+++I      G G+ ALD F SM  +   P+  T +
Sbjct: 453 AKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFT 512

Query: 251 IVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
            ++ AC     +++G+Q+F  +    G +         +D+F +   LE +    E++  
Sbjct: 513 NILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPI 572

Query: 310 WDYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
              A +   ++    R+G  E+A   +Q +L  ++ P       +LS+I
Sbjct: 573 PPTAAVWGALLGACSRHGNVELAELAYQNLL--ELEPCNHGAFVLLSNI 619


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 170/593 (28%), Positives = 293/593 (49%), Gaps = 37/593 (6%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             + +H    + GF A  ++G+  ++LYSR G+                  W        
Sbjct: 128 LGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSM-----------------W-------- 162

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                  A +VF  +  PDVV + S++S     G    A+E+  +M  QG++P+  T + 
Sbjct: 163 ------AAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTS 216

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           +L+       G+QIHG M++  +   +V    +LID Y + G    A  VF N++  +++
Sbjct: 217 MLAECPRMI-GEQIHGYMLKV-MGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVV 274

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW S++  C   G  E AL  F  M      P+E+  SI + AC    ++  G+Q+   +
Sbjct: 275 SWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACG---SVCLGRQIHCSA 331

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K   +++  V +A + ++ +   + +   +  +++  D       IS   + GF E A+
Sbjct: 332 IKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAV 391

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            L   M  E   P ++  S  LSS   +  ++ G Q H +A+K G D      ++L+ MY
Sbjct: 392 ALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMY 451

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K G I S+   F  ++  D++SWN+++ GL Q+G A   L+ F E+   G  PD  T  
Sbjct: 452 SKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFI 511

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           AVL+ CN+ G V +G   F  M + YG+ P   HYAC+ID+L + G+  +A+ +   MPF
Sbjct: 512 AVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPF 571

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   IW+++L +  ++ ++ + +   +++M+L       Y L++  YAM   W+   RV
Sbjct: 572 EPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASYVLMSNLYAMHEEWQDAERV 631

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           ++ M + G+ K  G SWI +KN + TF A +  H     IY +L  L   M+D
Sbjct: 632 RRRMDEIGVKKDAGWSWIEVKNEVSTFVARDTSHSDSASIYQMLAELVVVMQD 684



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 218/455 (47%), Gaps = 20/455 (4%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L  L+KS  L  AL +FD +P  +VV+W + ISG    G  + A  MF+ M   GV  + 
Sbjct: 49  LDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAAND 108

Query: 148 FTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           F  +  L+  ++A       G+Q+H   +R+G + ++  +G+ LI++Y + G ++ A  V
Sbjct: 109 FACNAALAACAAAGAGALSLGEQVHSLAVRAGFA-ADAWIGSCLIELYSRCGSMWAAEEV 167

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  ME  D++ + SL+S    +G    A++    M   G  P+E+T++ ++  C ++   
Sbjct: 168 FRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM--- 224

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+Q+    +KV    +    +A ID +S+    + +  +FE LD  +      M+   
Sbjct: 225 -IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLC 283

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAV 382
            R G  E AL +F  M+ E + P EF  S  L +     V  G Q H  AIK    ++  
Sbjct: 284 IRDGRLEDALRVFSEMISEAVEPNEFAFSIALGA--CGSVCLGRQIHCSAIKCNLMTDIR 341

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V+++L+ MY ++G +     +  K++  DLVSW   +    QNG + + + +  ++  EG
Sbjct: 342 VSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEG 401

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKE--EYGVMPGEEHYACIIDLLCQAGQL 499
             P+    ++ L +C     +D+G  +   A+K   ++ V  G      +I++  + GQ+
Sbjct: 402 FTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGN----ALINMYSKCGQI 457

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
           G A      M      S W S++   A +G   L 
Sbjct: 458 GSARLAFDVMNLHDVMS-WNSLIHGLAQHGAANLV 491



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 190/414 (45%), Gaps = 46/414 (11%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H   + L+ C ++I            + IHG++ K+  +   Y     +D YSR+G  D 
Sbjct: 212 HTMTSMLAECPRMI-----------GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDM 260

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
              +F+ +  KN +SW   ++  ++   L+ AL+VF E           MIS        
Sbjct: 261 AETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSE-----------MIS-------- 301

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLID 188
                       + V P+ F FSI L    S C G+QIH S I+  L ++++ + N+L+ 
Sbjct: 302 ------------EAVEPNEFAFSIALGACGSVCLGRQIHCSAIKCNL-MTDIRVSNALLS 348

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MYG+ G +     V   +E  D++SW + IS  F +G+ E A+     M   G++P++Y 
Sbjct: 349 MYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYA 408

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            S  +++C  L  LD+G+Q+  L++K+G        +A I+++SKC ++  +   F+ ++
Sbjct: 409 FSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMN 468

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ 367
             D    N +I    ++G   + LE F  M     +P + T   VL        V+ G  
Sbjct: 469 LHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGET 528

Query: 368 FHS-MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           F   M  + G        + +++M  + G  D +  +   +  + D++ W T++
Sbjct: 529 FFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLL 582



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 144/281 (51%), Gaps = 5/281 (1%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +VVL    +D   K G L  A  +F  M   ++++W + ISGC  +G  E A   F  M 
Sbjct: 41  DVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADML 100

Query: 239 YSGYSPDEYTISIVINACTKLRNLDK--GKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
            SG + +++  +  + AC          G+QV +L+V+ GF +++ + S  I+L+S+C  
Sbjct: 101 ESGVAANDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGS 160

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           +  +  +F +++  D      ++S   R G    A+E+   M+R+ ++P E T++ +L+ 
Sbjct: 161 MWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAE 220

Query: 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
               P   G Q H   +K     +   +++L++ Y++ G  D +  +F  LD +++VSW 
Sbjct: 221 C---PRMIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWC 277

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++M    ++GR  + L VF E++ E + P+    +  L AC
Sbjct: 278 SMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGAC 318


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 189/636 (29%), Positives = 320/636 (50%), Gaps = 69/636 (10%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLF---------KLGFNAHTYLGNRCLDLYSRFG 64
           S+ YC    D      +  F    HG LF         K G     ++GN  + +YSR+G
Sbjct: 165 SMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWG 224

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                           LD A +VFDE+PE D+VSWN+MISGYA 
Sbjct: 225 M-------------------------------LDEARRVFDEMPERDLVSWNAMISGYAQ 253

Query: 125 CG--YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGL 175
            G  Y   A+ +F  M    VR       + L+   SAC        G+QIHG   + G 
Sbjct: 254 EGKCYGLEAVLLFVNM----VRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGY 309

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
             ++V + N L+  Y K  V   A  VF ++   +++SW ++IS        E A+  F 
Sbjct: 310 G-THVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMISI-----DEEDAVSLFN 363

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
           +MR +G  P++ T   +I+A T +RNL  +G  +  L +K  FLS   V ++ I +++K 
Sbjct: 364 AMRVNGVYPNDVTFIGLIHAVT-IRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKF 422

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             +++S ++FE+L+  +    N +IS Y + G  + AL L  L   ++I+P ++T   VL
Sbjct: 423 ECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEAL-LTYLSAVKEIKPNQYTFGSVL 481

Query: 355 SSIPIP---PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           ++I       + HG   HS  +K G  ++ +V+ +L++MY K G I  S  +F +  +R 
Sbjct: 482 NAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERT 541

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
             +W  I+    ++G     + ++ E+  EG+ PD IT  +VL AC   G VD G  VF 
Sbjct: 542 QFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHRVFD 601

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
           +M +++ + P  EHY+ ++D+L + G+L +A ++   +P  PG S+ +S+L +  ++G++
Sbjct: 602 SMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNM 661

Query: 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
           ++ E V  R++++   S  PY L+   YA +G+WE +  V++ MR  G+ K  G SW+ +
Sbjct: 662 EMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDV 721

Query: 592 KN----RIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            N     ++ F++G+  H   + I  +   L  +M+
Sbjct: 722 SNVDSLYLHGFSSGDKSHPESENICKIAEFLGLQMK 757



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 145/503 (28%), Positives = 241/503 (47%), Gaps = 50/503 (9%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  ++   KS N   AL VF+ +  PD+VSWN+++SG+     S  AL     M   G+ 
Sbjct: 116 NSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGFEE---SVDALNFARSMHYCGIA 172

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               T++  L+          G Q+H  +++ GL    V +GN+L+ MY + G+L  A  
Sbjct: 173 FDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCE-VFIGNALVTMYSRWGMLDEARR 231

Query: 202 VFLNMEELDIISWNSLISGCFNSG--YGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
           VF  M E D++SWN++ISG    G  YG  A+  F +M   G   D  +++  ++AC  +
Sbjct: 232 VFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHM 291

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           +NL+ G+Q+  L+ KVG+ ++  V +  +  +SKC   +D+  +FE +   +      MI
Sbjct: 292 KNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMI 351

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFD 378
           S        E A+ LF  M    + P + T   ++ ++ I   V  G   H + IKS F 
Sbjct: 352 SID-----EEDAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFL 406

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S   V++S + MYAK   I  ST+IF +L+ R+ VSWN ++ G  QNG   E L  +   
Sbjct: 407 SEQTVSNSFITMYAKFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYLSA 466

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           ++E + P++ T  +VL A               A  E+  +  G+   +C   LL    +
Sbjct: 467 VKE-IKPNQYTFGSVLNAI--------------AAAEDISLNHGK---SCHSHLL----K 504

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           LG   D     P   G     ++L      GD+  ++ V    ++    +   ++ +  A
Sbjct: 505 LGLGTD-----PIVSG-----ALLDMYGKRGDIIESQRVFNETLE---RTQFAWTAIISA 551

Query: 559 YAMRGRWEAIVRVKKVMRKNGIN 581
           YA  G +E+++ +   M + GIN
Sbjct: 552 YARHGDFESVMSLYTEMEREGIN 574



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 175/375 (46%), Gaps = 21/375 (5%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMF-SKMQLQGVRPSGFTFSILLSTVSSACH 162
           FD IP P+  S N  +           AL  F +  QL  +        + ++    AC 
Sbjct: 34  FDFIPHPNAASVNHSMLNCLHSRLPFQALTAFKNHFQLHSLENVD---EVTVALSLKACQ 90

Query: 163 GK-----QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           G+     QIHG  + SG  +S V + NSL+ MY K G    A  VF N+   DI+SWN++
Sbjct: 91  GESKLGCQIHGFAVCSGF-VSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTV 149

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           +SG   S     AL+   SM Y G + D  T +  +  C        G Q+ +L VK G 
Sbjct: 150 LSGFEES---VDALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGL 206

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG--FGEVALELF 335
                + +A + ++S+   L+++ R+F+++   D    N MIS Y + G  +G  A+ LF
Sbjct: 207 GCEVFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLF 266

Query: 336 QLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M+R  +     +L+  +S+   +  +E G Q H +  K G+ ++  V + LM  Y+K 
Sbjct: 267 VNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKC 326

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
                +  +F  +  R++VSW T M+ + +     + + +F  +   G+ P+ +T   ++
Sbjct: 327 EVPKDAKAVFESISNRNVVSWTT-MISIDEE----DAVSLFNAMRVNGVYPNDVTFIGLI 381

Query: 455 LACNYGGFVDKGMLV 469
            A      V +G+ +
Sbjct: 382 HAVTIRNLVTEGLTI 396


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 163/539 (30%), Positives = 289/539 (53%), Gaps = 18/539 (3%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           ++ A KVFD+IPEP+   WN+M  GY+        + +F +M+   V P+ FTF ++L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +++   G+++H  +I+SG   +N  +  +LIDMY   G ++ A+ VF  M E ++I+
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFR-ANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIA 119

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI--SIVINACTKLRNLDKGKQVFAL 271
           W ++I+G           D   + R    +P+   +  + +I+   + +++ + +++F  
Sbjct: 120 WTAMINGYIT------CCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDK 173

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG-FGEV 330
                 +S + VL+     ++    +    RLFE++   +    N +I  Y R G F EV
Sbjct: 174 MPNKDVMSWNTVLNG----YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEV 229

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
                ++++   + P + TL  VLS+   +  ++ G   H  A   G+  N  V ++LM+
Sbjct: 230 LSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMD 289

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G ++++ ++F  +D +DL+SWNTI+ GL  +G  A+ L++F  +   G  PD IT
Sbjct: 290 MYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGIT 349

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              +L AC + G V+ G   F +M ++Y ++P  EHY CI+DLL +AG L  A+D    M
Sbjct: 350 FIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKM 409

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           P +    IW ++L A  +Y +V+L E   E++++ +  +P  Y +L+  Y   GRW+ + 
Sbjct: 410 PIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVA 469

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           R+K  MR  G  K+ GCS I + + +  F + + +H   ++IY  LR LT  +   G V
Sbjct: 470 RLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGYV 528



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 167/400 (41%), Gaps = 72/400 (18%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C+   +    + +H  + K GF A+ ++    +D+Y+  G      ++F E+ ++N
Sbjct: 57  ILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERN 116

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I+W   + G +   +L TA ++FD  PE D+V WN+MISGY        A E+F KM  
Sbjct: 117 VIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPN 176

Query: 141 QGVRP------------------------------------SGFTFSILLSTVSSACHGK 164
           + V                                       G+T +   S V SA    
Sbjct: 177 KDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRM 236

Query: 165 QIHGSMIRSGLSLSNVV-----------------------------LGNSLIDMYGKLGV 195
            + G+++ +  +L NV+                             + N+L+DMY K GV
Sbjct: 237 LVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGV 296

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF +M+  D+ISWN++I G    G+G  AL+ F  M+ +G +PD  T   ++ A
Sbjct: 297 VETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCA 356

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL----DRW 310
           CT +  ++ G   F +++     +         +DL  +   L  +V    ++    D  
Sbjct: 357 CTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAV 416

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
            +A +      Y      E+ALE  +L+  E   P  + +
Sbjct: 417 IWAALLGACRVYKNVELAELALE--KLIEFEPKNPANYVM 454


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 288/527 (54%), Gaps = 8/527 (1%)

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSG 174
           MI+GY SC    +A  +F +M  + + P+ FT S +L     +    +G+ +HG  I+ G
Sbjct: 64  MIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG 123

Query: 175 LSLSNVVLGNSLIDMYGKLGV-LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           L    + + N+L+DMY    V +  A  VF  +   + +SW +LI+G  +   G   L  
Sbjct: 124 LD-GFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRV 182

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M       + ++ SI + ACT + +   G+Q+ A   K GF SN  V+++ +D++ +
Sbjct: 183 FRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCR 242

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C+   ++ R F ++++ D    N +I+ Y R    E +L +F +M  E   P  FT + +
Sbjct: 243 CSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSI 301

Query: 354 LSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           +++   +  +  G Q H   I+ G D N  ++++L++MY+K G+I  S ++F  + +RDL
Sbjct: 302 MAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDL 361

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           VSW  +M+G   +G   E +++F++++  G+ PDR+   A+L AC++ G VD+G+  F  
Sbjct: 362 VSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKL 421

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M  +Y + P +E Y C++DLL +AG++ +A ++  +MPF+P   +W   L A   +    
Sbjct: 422 MVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPN 481

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           L +  A R++DL+      Y +L+  YA  G+W    R++K+M++ G  K TG SW+ + 
Sbjct: 482 LGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVG 541

Query: 593 NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVY-LECDKLDVE 638
           N +Y+F  G+      + IY VL  L   M++ G V  L+C   D+E
Sbjct: 542 NHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESGYVPDLDCLIYDLE 588



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 192/407 (47%), Gaps = 38/407 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   K   + + +HG   K G +   Y+ N  +D+Y+                 
Sbjct: 97  SSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYA----------------- 139

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
             C+S             +D A  VF  I   + VSW ++I+GY         L +F +M
Sbjct: 140 TCCVS-------------MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQM 186

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L+ V  + F+FSI +   +++ S   G+Q+H ++ + G   SN+ + NS++DMY +   
Sbjct: 187 LLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFE-SNLPVMNSILDMYCRCSC 245

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A   F  M + D+I+WN+LI+G   S   E +L  F  M   G+SP+ +T + ++ A
Sbjct: 246 FSEANRYFYEMNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAA 304

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L+ G+Q+    ++ G   N  + +A ID++SKC  + DS ++F  + R D    
Sbjct: 305 CATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSW 364

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
             M+  YG +G+GE A+ELF  M+R  IRP       +LS+      V+ G ++  + + 
Sbjct: 365 TAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVG 424

Query: 375 S-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                 +  +   ++++  + G ++ + E+   +  K D   W   +
Sbjct: 425 DYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFL 471



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 40/307 (13%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L++  +N  S S     +  C S  S  F + +H  + K GF ++  + N  LD+Y R  
Sbjct: 188 LEEVELNPFSFSIA---VRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCS 244

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              +  + F E+ Q++ I+WN  + G  +S+  ++                         
Sbjct: 245 CFSEANRYFYEMNQRDLITWNTLIAGYERSNPTES------------------------- 279

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
                  L +FS M+ +G  P+ FTF+ +++  ++      G+QIHG +IR GL   N+ 
Sbjct: 280 -------LYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD-GNLA 331

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L N+LIDMY K G +  +  VF  M   D++SW +++ G    GYGE A++ F  M  SG
Sbjct: 332 LSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSG 391

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDS 300
             PD      +++AC+    +D+G + F L V    +S +  +    +DL  +  ++E++
Sbjct: 392 IRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEA 451

Query: 301 VRLFEQL 307
             L E +
Sbjct: 452 YELIESM 458



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 54/235 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +    +  + IHG + + G + +  L N  +D+YS+ G   D  Q+F  + +
Sbjct: 299 TSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSR 358

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +                               D+VSW +M+ GY + GY + A+E+F KM
Sbjct: 359 R-------------------------------DLVSWTAMMIGYGTHGYGEEAVELFDKM 387

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
              G+RP    F  +LS  S        H  ++  GL    +++G+            ++
Sbjct: 388 VRSGIRPDRVVFMAILSACS--------HAGLVDEGLRYFKLMVGDYNISPDQEIYGCVV 439

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGY---GELALDQFYSMR 238
           D+ G+ G +  A+ +  +M  + D   W   +  C    +   G+LA  +   +R
Sbjct: 440 DLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLR 494


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1028

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 184/617 (29%), Positives = 304/617 (49%), Gaps = 40/617 (6%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + L+  C      +     H  + K     + ++GN  +D+Y++ G  +D  Q+F+    
Sbjct: 432  TSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFE---- 487

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                  ++C R                     D VSWN++I GY        A ++F +M
Sbjct: 488  ------HMCDR---------------------DNVSWNTIIGGYVQDENESEAFDLFMRM 520

Query: 139  QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               G+   G   +  L   + V     GKQ+H   ++ GL    +  G+SLIDMY K G+
Sbjct: 521  NSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLD-RVLHTGSSLIDMYSKCGI 579

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            +  A  VF +M E  ++S N+LI+G ++    E A+  F  M   G +P E T + ++ A
Sbjct: 580  IEDARKVFSSMPEWSVVSMNALIAG-YSQNNLEEAVVLFQEMLTKGVNPSEITFATIVEA 638

Query: 256  CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQLDRWDYAV 314
            C K  +L  G Q     +K GF S    L  ++  L+    R+ ++  LF +L      V
Sbjct: 639  CHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIV 698

Query: 315  I-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMA 372
            +   M+S + + GF E AL+ ++ M  +   P + T   VL    +   +  G   HS+ 
Sbjct: 699  LWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLI 758

Query: 373  IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNGRAAET 431
                 D + + +++L++MYAK G + SS+++F ++ +R ++VSWN+++ G  +NG A + 
Sbjct: 759  FHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDA 818

Query: 432  LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
            L +F+ + +  + PD IT   VL AC++ G V  G  +F  M  +YG+    +H AC++D
Sbjct: 819  LKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVD 878

Query: 492  LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
            LL + G L +A D       +P   +W S+L A  I+GD    E  AER+++L+  +   
Sbjct: 879  LLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSA 938

Query: 552  YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
            Y LL+  YA +GRWE    ++K MR  G+ KV G SWI +  R + F AG+  H    KI
Sbjct: 939  YVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKI 998

Query: 612  YLVLRLLTWEMEDEGCV 628
             + L  L   M+D+  V
Sbjct: 999  EMFLEDLYDLMKDDAVV 1015



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 231/469 (49%), Gaps = 47/469 (10%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +F + IH  + K+G   ++Y G   +D+Y++     D  ++FD I   N + W     G 
Sbjct: 177 EFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGY 236

Query: 92  LKSDNLDTALKVFD-----------------------------------EIPEPDVVSWN 116
           +K+   + A+ VF+                                   E+P PDVV+WN
Sbjct: 237 VKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWN 296

Query: 117 SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRS 173
            MISG+   G    A+E F  M+   V+ +  T   +LS +    +   G  +H   I+ 
Sbjct: 297 VMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL 356

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           GL+ SN+ +G+SL+ MY K   +  A  VF  +EE + + WN++I G  ++G     ++ 
Sbjct: 357 GLA-SNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMEL 415

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M+ SGY+ D++T + +++ C    +L+ G Q  ++ +K     N  V +A +D+++K
Sbjct: 416 FMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAK 475

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  LED+ ++FE +   D    N +I   G Y   E   E F L +R +        +C+
Sbjct: 476 CGALEDARQIFEHMCDRDNVSWNTII---GGYVQDENESEAFDLFMRMNSCGIVSDGACL 532

Query: 354 LSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            S++      H    G Q H +++K G D      SSL++MY+K G I+ + ++F  + +
Sbjct: 533 ASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPE 592

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             +VS N ++ G +QN    E + +F+E+L +G+ P  IT A ++ AC+
Sbjct: 593 WSVVSMNALIAGYSQNN-LEEAVVLFQEMLTKGVNPSEITFATIVEACH 640



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 237/515 (46%), Gaps = 58/515 (11%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D    +H    KLG  ++ Y+G+  + +YS+    +   ++F+ + ++N + WN    
Sbjct: 342 NLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWN---- 397

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                      +MI GYA  G S   +E+F  M+  G     FT
Sbjct: 398 ---------------------------AMIRGYAHNGESHKVMELFMDMKSSGYNIDDFT 430

Query: 150 FSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           F+ LLST + +     G Q H  +I+  L+  N+ +GN+L+DMY K G L  A  +F +M
Sbjct: 431 FTSLLSTCAVSHDLEMGSQFHSIIIKKKLT-KNLFVGNALVDMYAKCGALEDARQIFEHM 489

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D +SWN++I G         A D F  M   G   D   ++  + ACT +  L +GK
Sbjct: 490 CDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGK 549

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           QV  LSVK G        S+ ID++SKC  +ED+ ++F  +  W    +N +I+ Y +  
Sbjct: 550 QVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNN 609

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNA-VVA 384
             E A+ LFQ ML + + P+E T + ++ +   P  +  G+QFH   IK GF S    + 
Sbjct: 610 LEE-AVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLG 668

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            SL+ +Y  +  +  +  +F +L   + +V W  +M G +QNG   E L  ++E+  +G 
Sbjct: 669 ISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGA 728

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA---------CIIDLLC 494
            PD+ T   VL  C+          V S+++E   +     H A          +ID+  
Sbjct: 729 LPDQATFVTVLRVCS----------VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYA 778

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           + G +  +  +   M  +     W S++   A  G
Sbjct: 779 KCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNG 813



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 207/454 (45%), Gaps = 67/454 (14%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI--- 86
           S +  + ++GH+       H  L   CL+    F +     ++FDE+P +  ++  I   
Sbjct: 26  STELGRRVYGHVLPNHDQIHQGLLEICLEQCKLFKSR----KVFDEMPHRLALALRIGKA 81

Query: 87  -----CLRGLLKSDNLDTAL--------------KVFDEIPEPDVVSWNSMISGYASCGY 127
                 + G+     L  A+              K F+ + E DV +WNSM+S Y+S G 
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQ 140

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGN 184
               L  F  +    + P+ FTFSI+LST +   +   G+QIH SMI+ GL   N   G 
Sbjct: 141 PGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLE-RNSYCGG 199

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +L+DMY K   L  A  VF  + + + + W  L SG   +G  E A+  F  MR  G+ P
Sbjct: 200 ALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRP 259

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D      VIN    L                                    +L+D+  LF
Sbjct: 260 DHLAFVTVINTYISL-----------------------------------GKLKDARLLF 284

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVE 363
            ++   D    NVMIS +G+ G   VA+E F  M +  ++ T  TL  VLS+I I   ++
Sbjct: 285 GEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLD 344

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G   H+ AIK G  SN  V SSL+ MY+K   ++++ ++F  L++R+ V WN ++ G  
Sbjct: 345 LGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYA 404

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            NG + + +++F ++   G   D  T  ++L  C
Sbjct: 405 HNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTC 438


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 179/606 (29%), Positives = 301/606 (49%), Gaps = 38/606 (6%)

Query: 4   YLKKAH--VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           Y   AH  V+  +L+Y   L+  C +  S      +HGH+ KLGF A T++    +D+YS
Sbjct: 34  YSSMAHSGVHGNNLTY-PLLLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYS 92

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNS 117
           +        Q+FDE+PQ++ +SWN  +    +  ++D AL +  E+     EP   ++ S
Sbjct: 93  KCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVS 152

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL 177
           ++SGY++                       F F +L         GK IH  +I+ G+  
Sbjct: 153 ILSGYSNL--------------------DSFEFHLL---------GKSIHCCLIKLGIVY 183

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
             V L NSL+ MY +  ++  A  VF  M+E  IISW ++I G    G+   A   FY M
Sbjct: 184 LEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQM 243

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           ++     D      +I+ C ++R+L     V +L +K G      V +  I +++KC  L
Sbjct: 244 QHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNL 303

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             + R+F+ +          MI+ Y   G    AL+LF+ M+R DIRP   TL+ V+S+ 
Sbjct: 304 TSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSAC 363

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +  G +       +G +S+  V +SL+ MY+K GSI  + E+F ++  +DL  W 
Sbjct: 364 ADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWT 423

Query: 417 TIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
           +++     +G   E + +F ++   EG+ PD I   +V LAC++ G V++G+  F +M++
Sbjct: 424 SMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQK 483

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
           ++G+ P  EH  C+IDLL + GQL  A++    MP      +W  +L A  I+G+V+L E
Sbjct: 484 DFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGE 543

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
               R++D    S   Y L+   Y   G+W+    ++  M   G+ K +G S + + +  
Sbjct: 544 LATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTY 603

Query: 596 YTFNAG 601
           +TF  G
Sbjct: 604 HTFAVG 609



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 125/250 (50%), Gaps = 5/250 (2%)

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +WN +I    N+G+    L+ + SM +SG   +  T  +++ AC  L ++  G  +    
Sbjct: 13  TWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHV 72

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K+GF +++ V +A +D++SKC+ +  + ++F+++ +      N M+S Y R    + AL
Sbjct: 73  LKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQAL 132

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH---GSQFHSMAIKSGFDSNAV-VASSL 387
            L + M      PT  T   +LS    +   E    G   H   IK G     V +A+SL
Sbjct: 133 SLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSL 192

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           M MY +   +D + ++F  +D++ ++SW T++ G  + G A E   +F ++  + +  D 
Sbjct: 193 MGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDF 252

Query: 448 ITLAAVLLAC 457
           +    ++  C
Sbjct: 253 VVFLNLISGC 262


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 162/537 (30%), Positives = 284/537 (52%), Gaps = 18/537 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +   +  A +VFD   E D VSWN+++SGY   G  +  LE+FS M   G+  + F    
Sbjct: 149 RCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGS 208

Query: 153 LLST------------VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           ++              V      + +HG ++++GL  +++ L +++IDMY K G L  A 
Sbjct: 209 IIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLD-ADLFLASAMIDMYAKRGALTNAV 267

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELA---LDQFYSMRYSGYSPDEYTISIVINACT 257
            +F ++ + ++I  N++I+G       ++A   L  +  ++  G  P E++ S ++ AC 
Sbjct: 268 ALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACN 327

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
                  GKQ+    +K  F  +  + SA IDL+S    +ED  R F  L + D  +   
Sbjct: 328 LAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTS 387

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSG 376
           +IS   +    E AL LFQ  +R  +RP  F +S V+++     V   G Q   +A+KSG
Sbjct: 388 VISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSG 447

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F+    + +S + M A++G +D++T  F +++ RD+VSW+ ++     +G A + L VF 
Sbjct: 448 FNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFN 507

Query: 437 ELLEEGL-PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           E+L+  + PP+ IT  ++L AC++GG VD+G+  +  M +EYG+ P  +H  C++DLL +
Sbjct: 508 EMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGR 567

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555
           AG+L  A        F     +W S+L +  I+GD++  + VA+++MDL+  S   Y +L
Sbjct: 568 AGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVIL 627

Query: 556 TQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
              Y   G   +  + + +M++ G+ K  G SWI + + +++F AG+  H   + IY
Sbjct: 628 YNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSHPESKAIY 684



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 136/557 (24%), Positives = 239/557 (42%), Gaps = 70/557 (12%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  +      +H HL +   NA  +L N  L  Y R G    +                 
Sbjct: 11  SCAALPHVAAVHAHLARAHPNASLFLRNCLLASYCRLGVGAPL----------------- 53

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                        A ++ DE+P  + VS+N +I  Y+  G    +L  F++ +       
Sbjct: 54  ------------HAARLLDEMPRRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVD 101

Query: 147 GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT++  L+  S A     GK +H +M+  G   + + L NS+  MY + G +  A  VF
Sbjct: 102 RFTYAAALAACSRALDVRTGKAVH-AMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVF 160

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL- 262
              EE D +SWN+L+SG   +G  E  L+ F  M   G   + + +  +I  C    +  
Sbjct: 161 DAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYA 220

Query: 263 ---DKG-----KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
              D G     + V    VK G  ++  + SA ID+++K   L ++V LF+ +   +  V
Sbjct: 221 AAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIV 280

Query: 315 INVMISTYGRYGFGEVALE---LFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHS 370
           +N MI+ + R    +VA E   L+  +    ++P+EF+ S +L +  +      G Q H 
Sbjct: 281 LNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHG 340

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             +K  F  +  + S+L+++Y+ +G ++     F  L K+D+V W +++ G  QN    E
Sbjct: 341 QVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEE 400

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGF-----------VDKGMLVFSAMKEEYGV 479
            L +F+E +  GL PD   +++V+ AC                V  G   F+AM   +  
Sbjct: 401 ALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSF-- 458

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
                     I +  ++G +  A      M  +   S W +++ + A +G  +    V  
Sbjct: 459 ----------IHMCARSGDVDAATRRFQEMESRDVVS-WSAVISSHAHHGCARDALCVFN 507

Query: 540 RMMDLQLPSPLPYSLLT 556
            M+D ++  P   + L+
Sbjct: 508 EMLDAKVAPPNEITFLS 524



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 152/324 (46%), Gaps = 16/324 (4%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV--LYYAFGVFLNMEELD 210
           LL + ++  H   +H  + R+  + S + L N L+  Y +LGV    +A  +   M   +
Sbjct: 8   LLRSCAALPHVAAVHAHLARAHPNAS-LFLRNCLLASYCRLGVGAPLHAARLLDEMPRRN 66

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +S+N +I     +G   L+L  F   R      D +T +  + AC++  ++  GK V A
Sbjct: 67  AVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSRALDVRTGKAVHA 126

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           + V  G  +   + ++   ++++C  + ++ R+F+  +  D    N ++S Y R G  E 
Sbjct: 127 MVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREE 186

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI----------PIPPVEHGSQFHSMAIKSGFDSN 380
            LE+F LM R  +    F L  ++              +         H   +K+G D++
Sbjct: 187 TLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDAD 246

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR---AAETLDVFEE 437
             +AS++++MYAK G++ ++  +F  +   +++  N ++ G  +      A E L ++ E
Sbjct: 247 LFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSE 306

Query: 438 LLEEGLPPDRITLAAVLLACNYGG 461
           L   G+ P   + +++L ACN  G
Sbjct: 307 LQSRGMQPSEFSFSSILRACNLAG 330



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 133/302 (44%), Gaps = 37/302 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C     F F K IHG + K  F    Y+G+  +DLYS  G  +D  + F  +P+
Sbjct: 320 SSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPK 379

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ + W   + G ++++  + AL++F E                  C             
Sbjct: 380 QDVVIWTSVISGCVQNELFEEALRLFQE---------------SVRC------------- 411

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G+RP  F  S +++  +S   A  G+QI    ++SG +     +GNS I M  + G 
Sbjct: 412 ---GLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFN-RFTAMGNSFIHMCARSGD 467

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEYTISIVIN 254
           +  A   F  ME  D++SW+++IS   + G    AL  F  M  +  + P+E T   ++ 
Sbjct: 468 VDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILT 527

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           AC+    +D+G + + +      LS +I   +  +DL  +  RL D+          D A
Sbjct: 528 ACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDA 587

Query: 314 VI 315
           V+
Sbjct: 588 VV 589


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/525 (30%), Positives = 270/525 (51%), Gaps = 6/525 (1%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH----G 163
           P P VVS+ + ISG A  G    AL  F+ M   G+RP+ FTF       +SA      G
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
            QIH   IR G    +  +  + +DMY K G L  A  +F  M   ++++WN++++    
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G     ++ ++ +R +G  P+  +     NAC     L  G+Q     VK GF  +  V
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 257

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
           L++ +D + KC     +  +F+ +   +      M++ Y + G  E A   +    R   
Sbjct: 258 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 317

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            PT+F +S  L++   +  +  G   H++A++S  D+N  VAS+L++MY K G ++ + +
Sbjct: 318 EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQ 377

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGG 461
           IF +  +R+LV+WN ++ G    G A   L VF++++  G   P+ ITL  V+ +C+ GG
Sbjct: 378 IFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGG 437

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
               G  +F  M+E +G+ P  EHYAC++DLL +AG   +A ++   MP +P  S+W ++
Sbjct: 438 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 497

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++G  +L    AE++ +L       + LL+  +A  GRW     ++K M+  GI 
Sbjct: 498 LGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           K  GCSW+  KN ++ F A + +H    +I  +L  L  +M+  G
Sbjct: 558 KDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAG 602



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 176/411 (42%), Gaps = 48/411 (11%)

Query: 37  IHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL-RGLLKS 94
           IH    + G+     ++    LD+Y + G       LF E+P +N ++WN  +   +L  
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             L+T                                +E +  ++  G  P+  +     
Sbjct: 200 RPLET--------------------------------IEAYFGLREAGGLPNVVSACAFF 227

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  + A +   G+Q HG +++ G  +   VL NS++D YGK      A  VF  M   + 
Sbjct: 228 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVL-NSMVDFYGKCRCAGKARAVFDGMGVRNS 286

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW S+++    +G  E A   +   R SG  P ++ +S  +  C  L  L  G+ + A+
Sbjct: 287 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAV 346

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +V+    +N  V SA +D++ KC  +ED+ ++F +  + +    N MI  Y   G  + A
Sbjct: 347 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 406

Query: 332 LELFQLMLRE-DIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAIKSGFDSNAVVASSLM 388
           L +F  M+R  +  P   TL  V++S     +       F +M  + G +      + ++
Sbjct: 407 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 466

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI-----MMGLTQNGR-AAETL 432
           ++  + G  + + E+   +  R  +S W  +     M G T+ GR AAE L
Sbjct: 467 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKL 517



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 11/248 (4%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  VFD +   + VSW SM++ YA  G  + A   +   +  G  P+ F  S  L+T + 
Sbjct: 274 ARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAG 333

Query: 160 --ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
               H G+ +H   +RS +  +N+ + ++L+DMYGK G +  A  +F    + ++++WN+
Sbjct: 334 LLGLHLGRALHAVAVRSCID-ANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNA 392

Query: 217 LISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVK 274
           +I G  + G  + AL  F  M  SG  +P+  T+  VI +C++      G ++F  +  +
Sbjct: 393 MIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRER 452

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMIST---YGRYGFGEV 330
            G    +   +  +DL  +    E +  + + +  R   +V   ++     +G+   G +
Sbjct: 453 FGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRI 512

Query: 331 ALE-LFQL 337
           A E LF+L
Sbjct: 513 AAEKLFEL 520



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 13/303 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+  H   +R      +  +   L+++Y KL +   A     +     ++S+ + ISG  
Sbjct: 34  GRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAA 93

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK-GKQVFALSVKVGFLS-N 280
             G    AL  F  M   G  P+++T      A          G Q+ +L+++ G+L  +
Sbjct: 94  QHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVD 153

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V  A +D++ K  RL+ +  LF ++   +    N +++     G     +E +   LR
Sbjct: 154 PFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAY-FGLR 212

Query: 341 ED------IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           E       +    F  +C  +      +  G QFH   +K GF+ +  V +S+++ Y K 
Sbjct: 213 EAGGLPNVVSACAFFNACAGAMY----LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKC 268

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
                +  +F  +  R+ VSW +++    QNG   E    +      G  P    +++ L
Sbjct: 269 RCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSAL 328

Query: 455 LAC 457
             C
Sbjct: 329 TTC 331



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C         + +H    +   +A+ ++ +  +D+Y + G  +D  Q+F E PQ
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQ 384

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI-----PEPDVVSWNSMISGYASCGYSDYALE 133
           +N ++WN  + G     +   AL VFD++       P+ ++  ++I+  +  G +    E
Sbjct: 385 RNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYE 444

Query: 134 MFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLGNSLID 188
           +F  M+ + G+ P    ++ ++  +  A   +Q    I G  +R  +S+   +LG     
Sbjct: 445 LFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLG--ACK 502

Query: 189 MYGK 192
           M+GK
Sbjct: 503 MHGK 506


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 151/516 (29%), Positives = 287/516 (55%), Gaps = 7/516 (1%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           L+   +  A + FDE+   DV +WN+M+SG      +  A+ +F +M ++GV     T S
Sbjct: 115 LRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVS 174

Query: 152 ILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L     +        +H   ++ GL    + + N++ID+YGKLG+L     VF  M  
Sbjct: 175 SVLPMCVLLGDRALALAMHLYAVKHGLD-DELFVCNAMIDVYGKLGMLEEVRKVFDGMSS 233

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+++WNS+ISG    G    A++ F  MR SG SPD  T+  + +A  +  ++  G+ V
Sbjct: 234 RDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSV 293

Query: 269 FALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
               V+ G+ + + I  +A +D+++K +++E + R+F+ +   D    N +I+ Y + G 
Sbjct: 294 HCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGL 353

Query: 328 GEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
              A+ ++  M + E ++P + T   VL +   +  ++ G++ H+++IK+G + +  V +
Sbjct: 354 ASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGT 413

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
            ++++YAK G +D +  +F +  +R    WN ++ G+  +G  A+ L +F ++ +EG+ P
Sbjct: 414 CVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T  ++L AC++ G VD+G   F+ M+  YG+ P  +HYAC++D+  +AGQL  A D 
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDF 533

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP +P  +IW ++L A  I+G+V++ +  ++ + +L   +   Y L++  YA  G+W
Sbjct: 534 IRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKW 593

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG 601
           + +  V+ ++R+  + K  G S I +K  +  F +G
Sbjct: 594 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSG 629



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 195/412 (47%), Gaps = 45/412 (10%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L DR L+         +H +  K G +   ++ N  +D+Y + G  ++V ++FD
Sbjct: 177 LPMCVLLGDRALAL-------AMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFD 229

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            +  ++ ++W                               NS+ISG+   G    A+EM
Sbjct: 230 GMSSRDLVTW-------------------------------NSIISGHEQGGQVASAVEM 258

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M+  GV P   T   L S ++     C G+ +H  M+R G  + +++ GN+++DMY 
Sbjct: 259 FCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYA 318

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTIS 250
           KL  +  A  +F +M   D +SWN+LI+G   +G    A+  +  M ++ G  P + T  
Sbjct: 319 KLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFV 378

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ A + L  L +G ++ ALS+K G   +  V +  IDL++KC +L++++ LFEQ  R 
Sbjct: 379 SVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRR 438

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFH 369
                N +IS  G +G G  AL LF  M +E I P   T   +L++      V+ G  F 
Sbjct: 439 STGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFF 498

Query: 370 SMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +M   + G    A   + +++M+ + G +D + +    +  K D   W  ++
Sbjct: 499 NMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALL 550



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 186/386 (48%), Gaps = 5/386 (1%)

Query: 147 GFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            FTF  LL          Q+H   +R GL   +     +L+  Y + G +  A+  F  M
Sbjct: 71  AFTFPPLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEM 130

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D+ +WN+++SG   +     A+  F  M   G + D  T+S V+  C  L +     
Sbjct: 131 RHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALAL 190

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            +   +VK G      V +A ID++ K   LE+  ++F+ +   D    N +IS + + G
Sbjct: 191 AMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGG 250

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA- 384
               A+E+F  M    + P   TL  + S+I     +  G   H   ++ G+D   ++A 
Sbjct: 251 QVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAG 310

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGL 443
           +++++MYAK   I+++  +F  +  RD VSWNT++ G  QNG A+E + V++ + + EGL
Sbjct: 311 NAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGL 370

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P + T  +VL A ++ G + +G  +  A+  + G+        C+IDL  + G+L +A+
Sbjct: 371 KPIQGTFVSVLPAYSHLGALQQGTRMH-ALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAM 429

Query: 504 DITSTMPFQPGCSIWESILRASAIYG 529
            +    P +     W +++    ++G
Sbjct: 430 LLFEQTP-RRSTGPWNAVISGVGVHG 454



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           + I+ N  +    K   ++ A ++FD +P  D VSWN++I+GY   G +  A+ ++  MQ
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 140 L-QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++P   TF  +L   S + +   G ++H   I++GL+L +V +G  +ID+Y K G 
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNL-DVYVGTCVIDLYAKCGK 424

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A  +F          WN++ISG    G+G  AL  F  M+  G SPD  T   ++ A
Sbjct: 425 LDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAA 484

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    +D+G+  F  +    G    +   +  +D+F +  +L+D+      +  + D A
Sbjct: 485 CSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSA 544

Query: 314 VINVMIST---YGRYGFGEVALE-LFQL 337
           +   ++     +G    G+VA + LF+L
Sbjct: 545 IWGALLGACRIHGNVEMGKVASQNLFEL 572



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 37/199 (18%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H    K G N   Y+G   +DLY++ G  D+ + LF++ P+++   W            
Sbjct: 396 MHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPW------------ 443

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                              N++ISG    G+   AL +FS+MQ +G+ P   TF  LL+ 
Sbjct: 444 -------------------NAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAA 484

Query: 157 VSSAC---HGKQIHGSMIRSGLSLSNVVLGNS-LIDMYGKLGVLYYAFGVFLNME-ELDI 211
            S A     G+    +M+++   +  +    + ++DM+G+ G L  AF    NM  + D 
Sbjct: 485 CSHAGLVDQGRNFF-NMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDS 543

Query: 212 ISWNSLISGCFNSGYGELA 230
             W +L+  C   G  E+ 
Sbjct: 544 AIWGALLGACRIHGNVEMG 562


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 167/548 (30%), Positives = 298/548 (54%), Gaps = 13/548 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A +VF  +   D +SWN++I+     GY + A+  +  M+   + PS F    
Sbjct: 430 KCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAIS 489

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            LS+ +       G+Q+H   ++ GL L   V  N+L+ MYG+ G +   + +F +M   
Sbjct: 490 GLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSV-SNALVKMYGECGRMSECWEIFNSMSAH 548

Query: 210 DIISWNSLISGCFNSGYGEL--ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           D++SWNS++ G   S    +  ++  F +M  SG  P++ T    + A T L  L+ GKQ
Sbjct: 549 DVVSWNSIM-GVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQ 607

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYG 326
           + ++ +K G   ++ V +A +  ++K   ++   RLF ++  R D    N MIS Y   G
Sbjct: 608 IHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNG 667

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             + A++   LM+  +      T S VL++   +  +E G + H+  ++S  +S+ VV S
Sbjct: 668 HLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVES 727

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L++MY+K G ID ++++F  + +++  SWN+++ G  ++G   + L++FEE+ E G  P
Sbjct: 728 ALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESP 787

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +T  +VL AC++ G V++G+  F  M E+YG++P  EHY+C+IDLL +AG+L K  + 
Sbjct: 788 DHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELDKIQEY 846

Query: 506 TSTMPFQPGCSIWESILRA---SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
              MP +P   IW ++L A   S     + L    +  +++L+  +P+ Y L ++ +A  
Sbjct: 847 MKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAI 906

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           GRWE   + +  M+   + K  G SW+ + + ++TF AG+  H   ++IY  L  L  ++
Sbjct: 907 GRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKI 966

Query: 623 EDEGCVYL 630
            + G V L
Sbjct: 967 RNAGYVPL 974



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/513 (23%), Positives = 246/513 (47%), Gaps = 44/513 (8%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           + K G ++  Y+G+  +  ++R G  D+   ++  + ++N ++ N  + GL+K  + + A
Sbjct: 304 VLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAA 363

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
            ++F    +   V+ ++ +   +       A+  FS  + QG+R                
Sbjct: 364 AEIFMGARDSAAVNVDTYVVLLS-------AIAEFSTAE-QGLRK--------------- 400

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             G+++H  ++R+G     + + N L++MY K G +  A  VF  ME  D ISWN++I+ 
Sbjct: 401 --GREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITA 458

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +GY E A+  +  MR +   P  +     +++C  L  L  G+Q+   +VK G   +
Sbjct: 459 LDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLD 518

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY----AVINVMISTYGRYGFGEVALELFQ 336
           + V +A + ++ +C R+ +   +F  +   D     +++ VM S+         ++++F 
Sbjct: 519 TSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPI---TESVQVFS 575

Query: 337 LMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M++  + P + T    L+++ P+  +E G Q HS+ +K G   +  V ++LM  YAK+G
Sbjct: 576 NMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSG 635

Query: 396 SIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            +DS   +F ++  +RD +SWN+++ G   NG   E +D    ++      D  T + VL
Sbjct: 636 DVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVL 695

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITSTMP 510
            AC     +++GM + +     +G+    E      + ++D+  + G++  A  +  +M 
Sbjct: 696 NACASVAALERGMEMHA-----FGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMS 750

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            +   S W S++   A +G  +    + E M +
Sbjct: 751 QKNEFS-WNSMISGYARHGLGRKALEIFEEMQE 782



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 236/515 (45%), Gaps = 32/515 (6%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--GVRPSGFTF 150
           K   LD A +VFD +P  + VSW  +ISG+   G  + A  +F  M  +  G RP+ FTF
Sbjct: 112 KGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTF 171

Query: 151 SILLSTVSSACHGK-----QIHGSMIRSGLSLSNVVLGNSLIDMYG--KLGVLYYAFGVF 203
             +L     +   +     Q+HG + ++  + SN  + N+LI MYG   +G    A  VF
Sbjct: 172 GSVLRACQDSGPDRLGFAVQVHGLVSKTEFT-SNTTVCNALISMYGSCSVGPPILAQRVF 230

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY--SGYS--PDEYTISIVINACTKL 259
                 D+I+WN+L+S     G        F +M+Y  SG    P E+T   +I A T L
Sbjct: 231 DTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITA-TYL 289

Query: 260 RNLDKG--KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            +   G   Q+F   +K G  S+  V SA +  F++   L+++  ++  L   +   +N 
Sbjct: 290 SSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNG 349

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-----PIPPVEHGSQFHSMA 372
           +I+   +   GE A E+F +  R+       T   +LS+I         +  G + H+  
Sbjct: 350 LIAGLVKQQHGEAAAEIF-MGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHV 408

Query: 373 IKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           +++G     + V++ L+ MYAK G+ID +  +F  ++ RD +SWNTI+  L QNG     
Sbjct: 409 LRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAA 468

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG-MLVFSAMKEEYGVMPGEEHYACII 490
           +  +  + +  + P      + L +C   G +  G  L   A+K  +G+         ++
Sbjct: 469 MMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVK--WGLYLDTSVSNALV 526

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV---AERMMDLQLP 547
            +  + G++ +  +I ++M      S W SI+   A      +TE+V   +  M    +P
Sbjct: 527 KMYGECGRMSECWEIFNSMSAHDVVS-WNSIMGVMA-SSQAPITESVQVFSNMMKSGLVP 584

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
           + + +     A       E   ++  VM K+G+ +
Sbjct: 585 NKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTE 619



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 18/205 (8%)

Query: 1   MSSYLKKAHVNKASLSYC-----SQLIDRCL---------SFKSFDFAKTIHGHLFKLGF 46
           +S Y+   H+ +A    C      Q++D C          S  + +    +H    +   
Sbjct: 660 ISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHL 719

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
            +   + +  +D+YS+ G  D   ++F  + QKN  SWN  + G  +      AL++F+E
Sbjct: 720 ESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEE 779

Query: 107 IPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           + E    PD V++ S++S  +  G  +  L+ F  M+  G+ P    +S ++  +  A  
Sbjct: 780 MQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGE 839

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLI 187
             +I   M R  +  + ++    L+
Sbjct: 840 LDKIQEYMKRMPMKPNTLIWRTVLV 864



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H   +K G   +  +A+ L+  YAK   +D++  +F  +  R+ VSW  ++ G   +G 
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 428 AAETLDVFEELLEE--GLPPDRITLAAVLLACNYGG 461
             +   +F  +L E  G  P   T  +VL AC   G
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 165/539 (30%), Positives = 281/539 (52%), Gaps = 7/539 (1%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N+    K FDE+P  D+VSWN++I+ Y      D     F  M LQG+ P     SI LS
Sbjct: 10  NIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLS 69

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + A     G+ I  +++ +G+   ++V   +L+ MYGKLG    A  VFL M   D++
Sbjct: 70  ACTDAREITIGRSIQLAILGTGIEEESIV-QTALVSMYGKLGHCTDAASVFLRMSHRDVV 128

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +W+++++    +G+   AL  F  M   G +P++ T+   ++AC  L +L  G  +    
Sbjct: 129 AWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRV 188

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
              G  S  +V +A ++L+ KC R+E +V  F Q+   +    + + + Y R      A+
Sbjct: 189 EAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAI 248

Query: 333 ELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFH--SMAIKSGFDSNAVVASSLME 389
            +   M  E + P   T   VL +   I  ++ G + H  +  +  G +S+  V ++L+ 
Sbjct: 249 RVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVN 308

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K G++  + ++F K+   DLV WN+++    Q+G+  + L++FE +  EGL P  IT
Sbjct: 309 MYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIIT 368

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             +VL AC++ G +D+G   F +   ++G+ P  EH+ C++DLL +AG +  + D+   M
Sbjct: 369 FTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHM 428

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PF+P    W + L A   Y ++      AE +  L      PY LL+  YA  GRW  + 
Sbjct: 429 PFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVA 488

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           R+++ M+     K  G SWI +K+R++ F +G+L H    +I+  L+ LT  M++ G V
Sbjct: 489 RMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKEAGYV 547



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 165/358 (46%), Gaps = 3/358 (0%)

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           ++  Y ++G +      F  M   DI+SWN+LI+    +   +     F  M   G +P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E  ISI ++ACT  R +  G+ +    +  G    SIV +A + ++ K     D+  +F 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
           ++   D    + M++ Y R G    AL LF+ M  + + P + TL   L +   +  +  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G+  H      G  S  VV ++L+ +Y K G I+++ E F ++ ++++V+W+ I     +
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           N R  + + V   +  EGL P+  T  +VL AC     + +G  +    +   G +  + 
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDV 300

Query: 485 HY-ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +    ++++  + G L  A D+   +       +W S++  +A +G  +    + ERM
Sbjct: 301 YVLTALVNMYSKCGNLALAGDMFDKIA-HLDLVLWNSLIATNAQHGQTEKALELFERM 357



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 5/213 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   ++ A++ F +I E +VV+W+++ + YA    +  A+ +  +M L+G+ P+  TF  
Sbjct: 209 KCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVS 268

Query: 153 LL---STVSSACHGKQIH-GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           +L   + +++   G++IH  + +  G   S+V +  +L++MY K G L  A  +F  +  
Sbjct: 269 VLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAH 328

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           LD++ WNSLI+     G  E AL+ F  MR  G  P   T + V+ AC+    LD+G++ 
Sbjct: 329 LDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKH 388

Query: 269 FALSV-KVGFLSNSIVLSATIDLFSKCNRLEDS 300
           F   +   G    +      +DL  +   + DS
Sbjct: 389 FVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDS 421



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  NL  A  +FD+I   D+V WNS+I+  A  G ++ ALE+F +M+L+G++P+  TF+ 
Sbjct: 312 KCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTS 371

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           +L   S A     G++   S I              ++D+ G+ G +  +  + L+M  E
Sbjct: 372 VLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFE 431

Query: 209 LDIISWNSLISGC 221
              ++W + +  C
Sbjct: 432 PHPVAWMAFLGAC 444


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 268/465 (57%), Gaps = 3/465 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GKQ+H  + + G+S  N +L   L+++Y     L  A  +F  + + ++  WN +I G  
Sbjct: 20  GKQLHARICQVGISF-NPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYA 78

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G  ELA+  +Y MR  G  PD++T   V+ AC+ L  +++GK++    ++ G  S+  
Sbjct: 79  WNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVF 138

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A ID+++KC  +E + ++F+++D  D    N M++TY + G  + +L L ++M    
Sbjct: 139 VGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNG 198

Query: 343 IRPTEFTLS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++PTE T    + +S     +  G + H  + + GF+SN  V ++LM+MYAK+GS++ + 
Sbjct: 199 LKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVAR 258

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  L+++ +VSWN ++ G   +G A E LD+F+E+  + LP D IT   VL AC++GG
Sbjct: 259 SLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLP-DHITFVGVLAACSHGG 317

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +++G + F +M  ++ + P  +HY C+IDLL   G+L +A  +   M  +P   +W ++
Sbjct: 318 LLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGAL 377

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +  I+G+V++ E   E++++L+      Y +L+  YA  G+W+ + R++ +M   G+ 
Sbjct: 378 LHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLK 437

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           K   CSWI + N+++ F + +  H   + IY  L+     M++ G
Sbjct: 438 KSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAG 482



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 208/438 (47%), Gaps = 41/438 (9%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +SY + L+  C+  K+ +  K +H  + ++G + +  L  + ++LY    +  +   LFD
Sbjct: 1   MSYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFD 60

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            I ++N   WN+                               MI GYA  G  + A+ +
Sbjct: 61  RISKRNLFLWNV-------------------------------MIRGYAWNGPYELAISL 89

Query: 135 FSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + +M+  G+ P  FTF  +L   S +S+   GK+IH  +IRSGL  S+V +G +LIDMY 
Sbjct: 90  YYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLE-SDVFVGAALIDMYA 148

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A  VF  ++E D++ WNS+++    +G  + +L     M ++G  P E T  I
Sbjct: 149 KCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVI 208

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            I A      L +GK++   S + GF SN  V +A +D+++K   +  +  LFE L+   
Sbjct: 209 SIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKR 268

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSM 371
               N MI+ Y  +G    AL+LF+ M +  + P   T   VL++     + +  + H  
Sbjct: 269 VVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFR 327

Query: 372 AIKSGFDSNAVVA--SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRA 428
           ++ S F+    V   + ++++    G ++ + ++ +++  + D   W  ++     +G  
Sbjct: 328 SMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNV 387

Query: 429 AETLDVFEELLEEGLPPD 446
                  E+L+E  L PD
Sbjct: 388 EMGELALEKLVE--LEPD 403



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ +C   + ++ GKQ+ A   +VG   N ++ +  ++L+  CN L ++  LF+++ + +
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS 370
             + NVMI  Y   G  E+A+ L+  M    + P +FT   VL +   +  +E G + H 
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHK 126

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             I+SG +S+  V ++L++MYAK G ++S+ ++F K+D+RD+V WN+++   +QNG+  E
Sbjct: 127 DVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDE 186

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           +L +   +   GL P   T    + A    G + +G          +G    ++    ++
Sbjct: 187 SLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGK-ELHGYSWRHGFESNDKVKTALM 245

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           D+  ++G +  A  +   +  +   S W +++   A++G      ++ + M    LP  +
Sbjct: 246 DMYAKSGSVNVARSLFELLEEKRVVS-WNAMITGYAMHGHANEALDLFKEMKGKVLPDHI 304

Query: 551 PY 552
            +
Sbjct: 305 TF 306



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 44/220 (20%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +HG+ ++ GF ++  +    +D+Y+                               K
Sbjct: 222 GKELHGYSWRHGFESNDKVKTALMDMYA-------------------------------K 250

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S +++ A  +F+ + E  VVSWN+MI+GYA  G+++ AL++F +M+ + V P   TF  +
Sbjct: 251 SGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGV 309

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-EL 209
           L+  S       GK    SMI        V     +ID+ G  G L  A+ + + M  E 
Sbjct: 310 LAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEP 369

Query: 210 DIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSPDE 246
           D   W +L+  C    N   GELAL++   +      PD+
Sbjct: 370 DAGVWGALLHSCKIHGNVEMGELALEKLVELE-----PDD 404


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 171/555 (30%), Positives = 281/555 (50%), Gaps = 65/555 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IH    K GF    +L N  LD+Y++ G                             
Sbjct: 270 GKQIHTLAVKHGFERDLHLCNSLLDMYAKTG----------------------------- 300

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
             ++D+A  VF+ + +  VVSWN MISGY +   S+ ALE F +MQ  G  P   T+  +
Sbjct: 301 --DMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINM 358

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           L+    AC         ++SG    +V +G  + D                 M    +IS
Sbjct: 359 LT----AC---------VKSG----DVKVGRQIFDC----------------MSSPSLIS 385

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN+++SG   S     A++ F  M++   +PD  T++I++++C +L  L+ GKQV A+S 
Sbjct: 386 WNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQ 445

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K+GF  +  V S+ I+++SKC ++E S  +F +L   D    N MI+ +      + AL 
Sbjct: 446 KLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALA 505

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F+ M +    P+EF+ + + SS   +  +  G Q H+  IK G+  N  V SSL+EMY 
Sbjct: 506 CFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYC 565

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G + ++   F  +  +++V+WN ++ G   NG   E + ++++++  G  PD IT  A
Sbjct: 566 KCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVA 625

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++   VD+G+ +FS+M +++ V+P  +HY CIID L + G+  +   I  TMP++
Sbjct: 626 VLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYK 685

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
               +WE +L +  ++ +V L +  AE +  L   +  PY LL   Y+  GRW+    V+
Sbjct: 686 DDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVR 745

Query: 573 KVMRKNGINKVTGCS 587
            +M  N I+K  G S
Sbjct: 746 DLMSDNQIHKDPGYS 760



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 250/528 (47%), Gaps = 61/528 (11%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C++ KS   AK IH  +F+    + T+L N  +DLYS+         +FD+IP K
Sbjct: 10  NLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHK 69

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  S+N  L    KS+NL  A ++F ++PE + VS N++I+     GY   AL+ +  M 
Sbjct: 70  NIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMM 129

Query: 140 L-QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           + + V+PS  TF    +TV SAC        G++ HG +++ G   SN+ + N+L+ MY 
Sbjct: 130 VYESVKPSHITF----ATVFSACGGLKDVNCGRRNHGLVLKVGFD-SNIYVSNALLCMYT 184

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G+   AF VF  + E + +++ +++ G   +   +  L+ F  M   G   D  ++S 
Sbjct: 185 KCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLST 244

Query: 252 VINACTK------------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
           ++  C K            L    +GKQ+  L+VK GF  +  + ++ +D+++K   ++ 
Sbjct: 245 ILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDS 304

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           +  +FE LD+      N+MIS YG     E ALE FQ M             C       
Sbjct: 305 AENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRM------------QCC------ 346

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
                           G++ + V   +++    K+G +    +IF  +    L+SWN I+
Sbjct: 347 ----------------GYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAIL 390

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            G  Q+    E +++F ++  +   PDR TLA +L +C   G ++ G  V  A+ ++ G 
Sbjct: 391 SGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQV-HAVSQKLGF 449

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
                  + +I++  + G++  +  + S +  +     W S++   +I
Sbjct: 450 YDDVYVASSLINVYSKCGKMEVSKHVFSKLS-ELDVVCWNSMIAGFSI 496


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 170/565 (30%), Positives = 296/565 (52%), Gaps = 41/565 (7%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH- 162
           F  +  P V++W S+I  +        AL  F +M+  G  P    F  +L + +     
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 163 --GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---------GVLY-------------- 197
             G+ +HG ++R G+   ++  GN+L++MY KL         G ++              
Sbjct: 122 RFGESVHGFIVRLGMDC-DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDED 180

Query: 198 -------YAFG------VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
                    FG      VF  M   D++S+N++I+G   SG  E AL     M  +   P
Sbjct: 181 VKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D +T+S V+   ++  ++ KGK++    ++ G  S+  + S+ +D+++K  R+EDS R+F
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH 364
            +L   D    N +++ Y + G    AL LF+ M+   ++P     S V+ +       H
Sbjct: 301 SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLH 360

Query: 365 -GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H   ++ GF SN  +AS+L++MY+K G+I ++ +IF +++  D VSW  I+MG  
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHA 420

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
            +G   E + +FEE+  +G+ P+++   AVL AC++ G VD+    F++M + YG+    
Sbjct: 421 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 480

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHYA + DLL +AG+L +A +  S M  +P  S+W ++L + +++ +++L E VAE++  
Sbjct: 481 EHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFT 540

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           +   +   Y L+   YA  GRW+ + +++  MRK G+ K   CSWI +KN+ + F +G+ 
Sbjct: 541 VDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H    KI   L+ +  +ME EG V
Sbjct: 601 SHPSMDKINEFLKAVMEQMEKEGYV 625



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 227/449 (50%), Gaps = 16/449 (3%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRF---GTSDDVLQLFDEIP 77
           ++  C       F +++HG + +LG +   Y GN  +++Y++    G+   V  +FDE+P
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMP 170

Query: 78  QK--NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           Q+  N    ++     +    +D+  +VF+ +P  DVVS+N++I+GYA  G  + AL M 
Sbjct: 171 QRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMV 230

Query: 136 SKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +M    ++P  FT S +L   S       GK+IHG +IR G+  S+V +G+SL+DMY K
Sbjct: 231 REMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGID-SDVYIGSSLVDMYAK 289

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              +  +  VF  +   D ISWNSL++G   +G    AL  F  M  +   P     S V
Sbjct: 290 SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSV 349

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I AC  L  L  GKQ+    ++ GF SN  + SA +D++SKC  ++ + ++F++++  D 
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE 409

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHS 370
                +I  +  +G G  A+ LF+ M R+ ++P +     VL++     +  E    F+S
Sbjct: 410 VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNS 469

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAA 429
           M    G +      +++ ++  + G ++ +     K+      S W+T++   + +    
Sbjct: 470 MTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH---- 525

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACN 458
           + L++ E++ E+    D   + A +L CN
Sbjct: 526 KNLELAEKVAEKIFTVDSENMGAYVLMCN 554



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 191/431 (44%), Gaps = 79/431 (18%)

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           + + S    KQ+H   IR+  SLS+    + +I +Y  L +L+ A  +F  ++   +++W
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQ-SLSHTS-ASIVISIYTNLKLLHEALLLFKTLKSPPVLAW 73

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S+I    +      AL  F  MR SG  PD      V+ +CT + +L  G+ V    V+
Sbjct: 74  KSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR 133

Query: 275 VGFLSNSIVLSATIDLFSK---------------------CNRLEDSV------------ 301
           +G   +    +A +++++K                      N  ++ V            
Sbjct: 134 LGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGID 193

Query: 302 ---RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
              R+FE + R D    N +I+ Y + G  E AL + + M   D++P  FTLS VL   P
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL---P 250

Query: 359 I----PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           I      V  G + H   I+ G DS+  + SSL++MYAK+  I+ S  +F +L  RD +S
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY--------------- 459
           WN+++ G  QNGR  E L +F +++   + P  +  ++V+ AC +               
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVL 370

Query: 460 -GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
            GGF   G  +F A              + ++D+  + G +  A  I   M      S W
Sbjct: 371 RGGF---GSNIFIA--------------SALVDMYSKCGNIKAARKIFDRMNVLDEVS-W 412

Query: 519 ESILRASAIYG 529
            +I+   A++G
Sbjct: 413 TAIIMGHALHG 423



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 38/219 (17%)

Query: 8   AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
           A V   ++++ S +I  C    +    K +HG++ + GF ++ ++ +  +D+YS+ G   
Sbjct: 337 AKVKPGAVAF-SSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIK 395

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              ++FD                          + V DE      VSW ++I G+A  G+
Sbjct: 396 AARKIFDR-------------------------MNVLDE------VSWTAIIMGHALHGH 424

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG---SMIRS-GLSLSNVVLG 183
              A+ +F +M+ QGV+P+   F  +L+  S      +  G   SM +  GL+   +   
Sbjct: 425 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN-QELEHY 483

Query: 184 NSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGC 221
            ++ D+ G+ G L  A+     M  E     W++L+S C
Sbjct: 484 AAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 195/694 (28%), Positives = 315/694 (45%), Gaps = 116/694 (16%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKT--IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           A L      I  CL+  +   ++T   H H+ K G    T+L  + L  Y+         
Sbjct: 9   ALLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN-------- 60

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                         N+C          D  L V D +PEP+V S++++I  ++      +
Sbjct: 61  --------------NMCFA--------DATL-VLDLVPEPNVFSFSTLIYAFSKFHQFHH 97

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLG 183
           AL  FS+M  +G+ P     + +L +   AC G       +Q+HG    SG   S+  + 
Sbjct: 98  ALSTFSQMLTRGLMPD----NRVLPSAVKACAGLSALKPARQVHGIASVSGFD-SDSFVQ 152

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDI-------------------------------- 211
           +SL+ MY K   +  A  VF  M E D+                                
Sbjct: 153 SSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQ 212

Query: 212 ---ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
              ISWN +I+G  +SG    A+  F  M   G+ PD  TIS V+ A   L +L  G  +
Sbjct: 213 PNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILI 272

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G +S+  V SA ID++ KC+   +  ++F+Q+D  D    N  I    R G  
Sbjct: 273 HGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQV 332

Query: 329 EV-----------------------------------ALELFQLMLREDIRPTEFTLSCV 353
           E                                    ALELF+ M    ++P   T+ C+
Sbjct: 333 ESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCL 392

Query: 354 LSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           L +   I  + HG   H  +++ G  ++  V S+L++MYAK G I +S   F  +  ++L
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           V WN ++ G   +G+A E +++F+ +   G  PD I+   VL AC+  G  ++G   F++
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M  +YG+    EHYAC++ LL +AG+L +A  +   MP  P   +W ++L +  ++ +V 
Sbjct: 513 MSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVS 572

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           L E  AE++ +L+  +P  Y LL+  YA +G W  + RV+ +M+  G+ K  GCSWI +K
Sbjct: 573 LGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVK 632

Query: 593 NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           N+++   AG+  H    +I   L  L+ EM+  G
Sbjct: 633 NKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLG 666


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 172/610 (28%), Positives = 311/610 (50%), Gaps = 40/610 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKL-GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C S ++ +  K IH  +    G      L N  L +Y++ G+ +D  +LF+ +  +  +S
Sbjct: 131 CASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVS 190

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
                                         SWN+MI+ YA  G+ + A+ ++  M    V
Sbjct: 191 ------------------------------SWNAMIAAYAQSGHFEEAIRLYEDMD---V 217

Query: 144 RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            PS  TF+ +LS  S+      G++IH  +   G  L ++ L N+L+ MY +   L  A 
Sbjct: 218 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNALLTMYARCKCLDDAA 276

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F  +   D++SW+++I+    +   + A++ +  M+  G  P+ YT + V+ AC  + 
Sbjct: 277 KIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVG 336

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +L  G+ V    +  G+    +  +A +DL++    L+++  LF+Q++  D  +  V+I 
Sbjct: 337 DLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 396

Query: 321 TYGRYGFGEVALELFQLMLREDIRP-TEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFD 378
            Y + G     LEL++ M      P T+   SCV+S+   +       Q HS     G  
Sbjct: 397 GYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI 456

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+ V+A+SL+ MY++ G+++S+ ++F K+  RD ++W T++ G  ++G     L +++E+
Sbjct: 457 SDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEM 516

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
             EG  P  +T   VL AC++ G  ++G  +F +++ +Y + P   HY+CIIDLL +AG+
Sbjct: 517 ELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGR 576

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L  A ++ + MP +P    W S+L AS I+ DVK   + A ++  L    P  Y LL+  
Sbjct: 577 LSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNV 636

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           +A+ G    +  V+  M   G+ K  G SWI + ++I+ FN G+  H   Q+I+  L+ L
Sbjct: 637 HAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRL 696

Query: 619 TWEMEDEGCV 628
           + ++++ G V
Sbjct: 697 SPKIKEAGYV 706



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 211/422 (50%), Gaps = 25/422 (5%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEI---PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
            +C DL S       V Q+ D I      N    N  +R   K  ++ +A   FD I   
Sbjct: 35  RQCQDLES-------VRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARK 87

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIH 167
           +  SW SM++ YA  G+   AL+++ +M LQ   P+   ++ +L   +++ +   GK IH
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIEALEEGKAIH 144

Query: 168 GSMIRS-GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSG 225
             +  + GL L +V+L NSL+ MY K G L  A  +F  M     + SWN++I+    SG
Sbjct: 145 SRISGTKGLKL-DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSG 203

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
           + E A+  +  M      P   T + V++AC+ L  LD+G+++ AL    G   +  + +
Sbjct: 204 HFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 260

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A + ++++C  L+D+ ++F++L R D    + MI+ +      + A+E +  M  E +RP
Sbjct: 261 ALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP 320

Query: 346 TEFTLSCV-LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             +T + V L+   +  +  G   H   + +G+    V  ++L+++Y   GS+D +  +F
Sbjct: 321 NYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLF 380

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLAC-NYGGF 462
            +++ RD   W  ++ G ++ G     L+++ E+     +P  +I  + V+ AC + G F
Sbjct: 381 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 440

Query: 463 VD 464
            D
Sbjct: 441 AD 442



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 166/309 (53%), Gaps = 11/309 (3%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           +QIH  +  SG + +NV LGN ++  YGK G +  A   F  +   +  SW S+++    
Sbjct: 44  RQIHDRI--SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQ 101

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSI 282
           +G+   ALD +  M      P+    + V+ AC  +  L++GK + + +S   G   + I
Sbjct: 102 NGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVI 158

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           + ++ + +++KC  LED+ RLFE++  R   +  N MI+ Y + G  E A+ L++ M   
Sbjct: 159 LENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM--- 215

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           D+ P+  T + VLS+   +  ++ G + H++    G + +  + ++L+ MYA+   +D +
Sbjct: 216 DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDA 275

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            +IF +L +RD+VSW+ ++    +     E ++ + ++  EG+ P+  T A+VLLAC   
Sbjct: 276 AKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASV 335

Query: 461 GFVDKGMLV 469
           G +  G  V
Sbjct: 336 GDLRAGRAV 344



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 197/410 (48%), Gaps = 43/410 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +    D  + IH  +   G      L N  L +Y+R    DD  ++F  +P+
Sbjct: 225 TSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPR 284

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SW                               ++MI+ +A     D A+E +SKM
Sbjct: 285 RDVVSW-------------------------------SAMIAAFAETDLFDEAIEFYSKM 313

Query: 139 QLQGVRPSGFTF-SILL--STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           QL+GVRP+ +TF S+LL  ++V     G+ +H  ++ +G  ++ +V G +L+D+Y   G 
Sbjct: 314 QLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT-LVNGTALVDLYTSYGS 372

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI-SIVIN 254
           L  A  +F  +E  D   W  LI G    G+    L+ +  M+ +   P    I S VI+
Sbjct: 373 LDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVIS 432

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L      +Q  +     G +S+ ++ ++ ++++S+   LE + ++F+++   D   
Sbjct: 433 ACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA 492

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAI 373
              +I+ Y ++G   +AL L++ M  E   P+E T   VL +     + E G Q   ++I
Sbjct: 493 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLF-ISI 551

Query: 374 KSGFDSNAVVA--SSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIM 419
           +S +  +  +A  S ++++ ++ G +  + E+   + ++  D V+W++++
Sbjct: 552 QSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPND-VTWSSLL 600


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 310/626 (49%), Gaps = 39/626 (6%)

Query: 6   KKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT 65
           K   V   S S+   L   C   ++  F + IH  + K+G +   Y+    L +YS+ G 
Sbjct: 264 KNNSVKLVSTSFTGAL-GACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGM 322

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
             +   +F      +C+              +D  L++           WN+M++ YA  
Sbjct: 323 VGEAETVF------SCV--------------VDKRLEI-----------WNAMVAAYAEN 351

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVL 182
            Y   AL++F  M+ + V P  FT S ++S  S      +GK +H  + +  +  S   +
Sbjct: 352 DYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQ-STSTI 410

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
            ++L+ +Y K G    A+ VF +MEE D+++W SLISG   +G  + AL  F  M+    
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDD 470

Query: 243 S--PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           S  PD   ++ V NAC  L  L  G QV    +K G + N  V S+ IDL+SKC   E +
Sbjct: 471 SLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMA 530

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
           +++F  +   +    N MIS Y R    E++++LF LML + I P   +++ VL +I   
Sbjct: 531 LKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISST 590

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             +  G   H   ++ G  S+  + ++L++MY K G    +  IF K+  + L++WN ++
Sbjct: 591 ASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMI 650

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            G   +G     L +F+E+ + G  PD +T  +++ ACN+ GFV++G  +F  MK++YG+
Sbjct: 651 YGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGI 710

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  EHYA ++DLL +AG L +A      MP +   SIW  +L AS  + +V+L    AE
Sbjct: 711 EPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAE 770

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
           +++ ++      Y  L   Y   G      ++  +M++ G++K  GCSWI + +R   F 
Sbjct: 771 KLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFF 830

Query: 600 AGELQHHGGQKIYLVLRLLTWEMEDE 625
           +G        +I+ VL  L   M DE
Sbjct: 831 SGGSSSPMKAEIFNVLNRLKSNMVDE 856



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 251/511 (49%), Gaps = 36/511 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C +  +  + KTIHG +  LG+    ++    +++Y + G  D  +Q+FD      
Sbjct: 66  LLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFD------ 119

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
              W+    G                +   DV  WNSMI GY         +  F +M +
Sbjct: 120 --GWSQSQSG----------------VSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLV 161

Query: 141 QGVRPSGFTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            GVRP  F+ SI++S +    +     GKQIHG M+R+ L  ++  L  +LIDMY K G+
Sbjct: 162 FGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLD-TDSFLKTALIDMYFKFGL 220

Query: 196 LYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
              A+ VF+ +E+  +++ WN +I G   SG  E +LD +   + +       + +  + 
Sbjct: 221 SIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALG 280

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC++  N   G+Q+    VK+G  ++  V ++ + ++SKC  + ++  +F  +      +
Sbjct: 281 ACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEI 340

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAI 373
            N M++ Y    +G  AL+LF  M ++ + P  FTLS V+S   +  +  +G   H+   
Sbjct: 341 WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELF 400

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K    S + + S+L+ +Y+K G    +  +F  ++++D+V+W +++ GL +NG+  E L 
Sbjct: 401 KRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALK 460

Query: 434 VFEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           VF ++   ++ L PD   + +V  AC     +  G+ V  +M +  G++      + +ID
Sbjct: 461 VFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKT-GLVLNVFVGSSLID 519

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           L  + G    A+ + ++M  +   + W S++
Sbjct: 520 LYSKCGLPEMALKVFTSMSTENMVA-WNSMI 549



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 217/439 (49%), Gaps = 37/439 (8%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHG + +   +  ++L    +D+Y +FG S D  ++F EI  K+             
Sbjct: 189 GKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKS------------- 235

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                            +VV WN MI G+   G  + +L+++   +   V+    +F+  
Sbjct: 236 -----------------NVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGA 278

Query: 154 LSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   S + +   G+QIH  +++ GL  ++  +  SL+ MY K G++  A  VF  + +  
Sbjct: 279 LGACSQSENSGFGRQIHCDVVKMGLH-NDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKR 337

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +  WN++++    + YG  ALD F  MR     PD +T+S VI+ C+ L   + GK V A
Sbjct: 338 LEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHA 397

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
              K    S S + SA + L+SKC    D+  +F+ ++  D      +IS   + G  + 
Sbjct: 398 ELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKE 457

Query: 331 ALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           AL++F  M  +D  ++P    ++ V ++   +  +  G Q H   IK+G   N  V SSL
Sbjct: 458 ALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSL 517

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +++Y+K G  + + ++F  +   ++V+WN+++   ++N     ++D+F  +L +G+ PD 
Sbjct: 518 IDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDS 577

Query: 448 ITLAAVLLACNYGGFVDKG 466
           +++ +VL+A +    + KG
Sbjct: 578 VSITSVLVAISSTASLLKG 596



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 206/471 (43%), Gaps = 65/471 (13%)

Query: 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGVRP---SGFTFSILL---STVSSACHGKQI 166
            S NS I      G    AL ++SK    G  P   S FTF  LL   S +++  +GK I
Sbjct: 25  ASINSGIRALIQKGEYLQALHLYSKHD--GSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-------LNMEELDIISWNSLIS 219
           HGS++  G    +  +  SL++MY K G L YA  VF         +   D+  WNS+I 
Sbjct: 83  HGSVVVLGWRY-DPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMID 141

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL--DKGKQVFALSVKVGF 277
           G F     +  +  F  M   G  PD +++SIV++   K  N   ++GKQ+    ++   
Sbjct: 142 GYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSL 201

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQ 336
            ++S + +A ID++ K     D+ R+F ++ D+ +  + NVMI  +G  G  E +L+L+ 
Sbjct: 202 DTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYM 261

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           L     ++    + +  L +         G Q H   +K G  ++  V +SL+ MY+K G
Sbjct: 262 LAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCG 321

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            +  +  +F  +  + L  WN ++    +N      LD+F  + ++ + PD  TL+ V+ 
Sbjct: 322 MVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVIS 381

Query: 456 AC------NYGGFVDKGM-----------------------------LVFSAMKEEYGVM 480
            C      NYG  V   +                             LVF +M+E+  V 
Sbjct: 382 CCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVA 441

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMP-----FQPGCSIWESILRASA 526
            G      +I  LC+ G+  +A+ +   M       +P   I  S+  A A
Sbjct: 442 WGS-----LISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACA 487


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 173/610 (28%), Positives = 311/610 (50%), Gaps = 41/610 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKL-GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C S K+ +  K IH  +    G      L N  L +Y++ G+ +D  +LF+ +  ++   
Sbjct: 131 CASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRS--- 187

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
                                       V SWN+MI+ YA  G+ + A+ ++  M    V
Sbjct: 188 ----------------------------VSSWNAMIAAYAQSGHFEEAIRLYEDMD---V 216

Query: 144 RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            PS  TF+ +LS  S+      G++IH  +   G  L ++ L N+L+ MY +   L  A 
Sbjct: 217 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL-DLSLQNALLTMYARCKCLDDAA 275

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F  +   D++SW+++I+    +   + A++ +  M+  G  P+ YT + V+ AC  + 
Sbjct: 276 KIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVG 335

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +L  G+ V    +  G+    +  +A +DL++    L+++  LF+Q++  D  +  V+I 
Sbjct: 336 DLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 395

Query: 321 TYGRYGFGEVALELFQLMLREDIRP-TEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFD 378
            Y + G     LEL++ M      P T+   SCV+S+   +       Q HS     G  
Sbjct: 396 GYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI 455

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           S+ V+A+SL+ MY++ G+++S+ ++F K+  RD ++W T++ G  ++G     L +++E+
Sbjct: 456 SDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEM 515

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
             EG  P  +T   VL AC++ G  ++G  +F +++ +Y + P   HY+CIIDLL +AG+
Sbjct: 516 ELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGR 575

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L  A ++ + MP +P    W S+L AS I+ DVK   + A ++  L    P  Y LL+  
Sbjct: 576 LSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNV 635

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           +A+ G    +  V+  M   G+ K  G SWI + ++I+ FN G+  H   Q+I+  L+ L
Sbjct: 636 HAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRL 695

Query: 619 TWEMEDEGCV 628
           + ++++ G V
Sbjct: 696 SPKIKEAGYV 705



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 211/421 (50%), Gaps = 24/421 (5%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEI---PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
            +C DL S       V Q+ D I      N    N  +R   K  ++ +A   FD I   
Sbjct: 35  RQCQDLES-------VRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARK 87

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIH 167
           +  SW SM++ YA  G+   AL+++ +M LQ   P+   ++ +L   +++ +   GK IH
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIKALEEGKAIH 144

Query: 168 GSMIRS-GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
             +  + GL L +V+L NSL+ MY K G L  A  +F  M    + SWN++I+    SG+
Sbjct: 145 SRISGTKGLKL-DVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGH 203

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E A+  +  M      P   T + V++AC+ L  LD+G+++ AL    G   +  + +A
Sbjct: 204 FEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNA 260

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            + ++++C  L+D+ ++F++L R D    + MI+ +      + A+E +  M  E +RP 
Sbjct: 261 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 320

Query: 347 EFTLSCV-LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
            +T + V L+   +  +  G   H   + +G+    V  ++L+++Y   GS+D +  +F 
Sbjct: 321 YYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFD 380

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLAC-NYGGFV 463
           +++ RD   W  ++ G ++ G     L+++ E+     +P  +I  + V+ AC + G F 
Sbjct: 381 QIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFA 440

Query: 464 D 464
           D
Sbjct: 441 D 441



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 196/410 (47%), Gaps = 43/410 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +    D  + IH  +   G      L N  L +Y+R    DD  ++F  +P+
Sbjct: 224 TSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPR 283

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ +SW                               ++MI+ +A     D A+E +SKM
Sbjct: 284 RDVVSW-------------------------------SAMIAAFAETDLFDEAIEFYSKM 312

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           QL+GVRP+ +TF+ +L   ++V     G+ +H  ++ +G  ++ +V G +L+D+Y   G 
Sbjct: 313 QLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT-LVNGTALVDLYTSYGS 371

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI-SIVIN 254
           L  A  +F  +E  D   W  LI G    G+    L+ +  M+ +   P    I S VI+
Sbjct: 372 LDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVIS 431

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L      +Q  +     G +S+ ++ ++ ++++S+   LE + ++F+++   D   
Sbjct: 432 ACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA 491

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAI 373
              +I+ Y ++G   +AL L++ M  E   P+E T   VL +     + E G Q   ++I
Sbjct: 492 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLF-ISI 550

Query: 374 KSGFDSNAVVA--SSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIM 419
           +S +  +  +A  S ++++ ++ G +  + E+   + ++  D V+W++++
Sbjct: 551 QSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPND-VTWSSLL 599



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 19/225 (8%)

Query: 254 NACTKLRNLDKGKQVF-----ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           +A  + ++L+  +Q+      A S  V FL N IV +     + KC  +  +   F+ + 
Sbjct: 32  DALRQCQDLESVRQIHDRISGAASANV-FLGNEIVRA-----YGKCGSVASARAAFDAIA 85

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ 367
           R +      M++ Y + G    AL+L++ M   D++P     + VL +   I  +E G  
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKA 142

Query: 368 FHS-MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
            HS ++   G   + ++ +SL+ MYAK GS++ +  +F ++  R + SWN ++    Q+G
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSG 202

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
              E + ++E++    + P   T  +VL AC+  G +D+G  + +
Sbjct: 203 HFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHA 244


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 170/600 (28%), Positives = 306/600 (51%), Gaps = 42/600 (7%)

Query: 28  FKSFDFAKT---IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           F S D A+    +H  + KLG++++ ++G   ++ YS  G+                   
Sbjct: 156 FVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGS------------------- 196

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       +D+A  VF+ I   D+V W  ++S Y   GY + +L++ S M++ G  
Sbjct: 197 ------------VDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFM 244

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+ +TF   L     + +    K +HG ++++   L   V G  L+ +Y +LG +  AF 
Sbjct: 245 PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRV-GVGLLQLYTQLGDMSDAFK 303

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF  M + D++ W+ +I+    +G+   A+D F  MR +   P+E+T+S ++N C   + 
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKC 363

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
              G+Q+  L VKVGF  +  V +A ID+++KC +++ +V+LF +L   +    N +I  
Sbjct: 364 SGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVG 423

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
           Y   G G  A  +F+  LR  +  TE T S  L +   +  ++ G Q H +AIK+     
Sbjct: 424 YENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKK 483

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V++SL++MYAK G I  +  +F +++  D+ SWN ++ G + +G   + L + + + +
Sbjct: 484 VAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD 543

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
               P+ +T   VL  C+  G +D+G   F +M  ++G+ P  EHY C++ LL ++GQL 
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLD 603

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           KA+ +   +P++P   IW ++L AS    + +     AE ++ +       Y L++  YA
Sbjct: 604 KAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYA 663

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
              +W  +  ++K M++ G+ K  G SWI  +  ++ F+ G L  H   K  L+  +L W
Sbjct: 664 GAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVG-LSDHPDMK--LINGMLEW 720



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 140/575 (24%), Positives = 254/575 (44%), Gaps = 77/575 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++ RC+       AK IH  + K G          CLDL++                   
Sbjct: 55  MLRRCIQKNDPISAKAIHCDILKKG---------SCLDLFAT------------------ 87

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
               NI L   +K+     AL +FDE+PE + VS+ ++  GYA        + ++S++  
Sbjct: 88  ----NILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYAC----QDPIGLYSRLHR 139

Query: 141 QG--VRPSGFT-FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G  + P  FT F  L  ++  A     +H  +++ G   SN  +G +LI+ Y   G + 
Sbjct: 140 EGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYD-SNAFVGAALINAYSVCGSVD 198

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +   DI+ W  ++S    +GY E +L     MR +G+ P+ YT    + A  
Sbjct: 199 SARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASI 258

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L   D  K V    +K  ++ +  V    + L+++   + D+ ++F ++ + D    + 
Sbjct: 259 GLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSF 318

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSG 376
           MI+ + + GF   A++LF  M    + P EFTLS +L+   I      G Q H + +K G
Sbjct: 319 MIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVG 378

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FD +  V+++L+++YAK   +D++ ++F +L  ++ VSWNT+++G    G   +   +F 
Sbjct: 379 FDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFR 438

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E L   +    +T ++ L AC     +D G+ V                           
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMDLGVQVH-------------------------- 472

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
              G AI   +        ++  S++   A  GD+K  ++V   M  + + S   ++ L 
Sbjct: 473 ---GLAIKTNNAKKV----AVSNSLIDMYAKCGDIKFAQSVFNEMETIDVAS---WNALI 522

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
             Y+  G     +R+  +M+     K  G +++G+
Sbjct: 523 SGYSTHGLGRQALRILDIMKDRDC-KPNGLTFLGV 556



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 36/291 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C   K     + +HG + K+GF+   Y+ N  +D+Y++    D  ++LF E+  
Sbjct: 352 SSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSS 411

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +S                               WN++I GY + G    A  MF + 
Sbjct: 412 KNEVS-------------------------------WNTVIVGYENLGEGGKAFSMFREA 440

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V  +  TFS  L   +S      G Q+HG  I++  +   V + NSLIDMY K G 
Sbjct: 441 LRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTN-NAKKVAVSNSLIDMYAKCGD 499

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           + +A  VF  ME +D+ SWN+LISG    G G  AL     M+     P+  T   V++ 
Sbjct: 500 IKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSG 559

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFE 305
           C+    +D+G++ F   ++   +   +   +  + L  +  +L+ +++L E
Sbjct: 560 CSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIE 610


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/525 (30%), Positives = 270/525 (51%), Gaps = 6/525 (1%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH----G 163
           P P VVS+ + ISG A  G    AL  F+ M   G+RP+ FTF       +SA      G
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
            QIH   IR G    +  +  + +DMY K G L  A  +F  M   ++++WN++++    
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G     ++ ++ +R +G  P+  +     NAC     L  G+Q     VK GF  +  V
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 257

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
           L++ +D + KC     +  +F+ +   +      M++ Y + G  E A   +    R   
Sbjct: 258 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 317

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            PT+F +S  L++   +  +  G   H++A++S  D+N  VAS+L++MY K G ++ + +
Sbjct: 318 EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQ 377

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGG 461
           IF +  +R+LV+WN ++ G    G A   L VF++++  G   P+ ITL  V+ +C+ GG
Sbjct: 378 IFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGG 437

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
               G  +F  M+E +G+ P  EHYAC++DLL +AG   +A ++   MP +P  S+W ++
Sbjct: 438 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 497

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++G  +L    AE++ +L       + LL+  +A  GRW     ++K M+  GI 
Sbjct: 498 LGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           K  GCSW+  KN ++ F A + +H    +I  +L  L  +M+  G
Sbjct: 558 KDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAG 602



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 176/411 (42%), Gaps = 48/411 (11%)

Query: 37  IHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL-RGLLKS 94
           IH    + G+     ++    LD+Y + G       LF E+P +N ++WN  +   +L  
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             L+T                                +E +  ++  G  P+  +     
Sbjct: 200 RPLET--------------------------------IEAYFGLREAGGLPNVVSACAFF 227

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  + A +   G+Q HG +++ G  +   VL NS++D YGK      A  VF  M   + 
Sbjct: 228 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVL-NSMVDFYGKCRCAGKARAVFDGMGVRNS 286

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW S+++    +G  E A   +   R SG  P ++ +S  +  C  L  L  G+ + A+
Sbjct: 287 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAV 346

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +V+    +N  V SA +D++ KC  +ED+ ++F +  + +    N MI  Y   G  + A
Sbjct: 347 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 406

Query: 332 LELFQLMLRE-DIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAIKSGFDSNAVVASSLM 388
           L +F  M+R  +  P   TL  V++S     +       F +M  + G +      + ++
Sbjct: 407 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 466

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI-----MMGLTQNGR-AAETL 432
           ++  + G  + + E+   +  R  +S W  +     M G T+ GR AAE L
Sbjct: 467 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKL 517



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 11/248 (4%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  VFD +   + VSW SM++ YA  G  + A   +   +  G  P+ F  S  L+T + 
Sbjct: 274 ARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAG 333

Query: 160 --ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
               H G+ +H   +RS +  +N+ + ++L+DMYGK G +  A  +F    + ++++WN+
Sbjct: 334 LLGLHLGRALHAVAVRSCID-ANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNA 392

Query: 217 LISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVK 274
           +I G  + G  + AL  F  M  SG  +P+  T+  VI +C++      G ++F  +  +
Sbjct: 393 MIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRER 452

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMIST---YGRYGFGEV 330
            G    +   +  +DL  +    E +  + + +  R   +V   ++     +G+   G +
Sbjct: 453 FGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRI 512

Query: 331 ALE-LFQL 337
           A E LF+L
Sbjct: 513 AAEKLFEL 520



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 13/303 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+  H   +R      +  +   L+++Y KL +   A     +     ++S+ + ISG  
Sbjct: 34  GRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAA 93

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK-GKQVFALSVKVGFLS-N 280
             G    AL  F  M   G  P+++T      A          G Q+ +L+++ G+L  +
Sbjct: 94  QHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVD 153

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V  A +D++ K  RL+ +  LF ++   +    N +++     G     +E +   LR
Sbjct: 154 PFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAY-FGLR 212

Query: 341 ED------IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           E       +    F  +C  +      +  G QFH   +K GF+ +  V +S+++ Y K 
Sbjct: 213 EAGGLPNVVSACAFFNACAGAMY----LSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKC 268

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
                +  +F  +  R+ VSW +++    QNG   E    +      G  P    +++ L
Sbjct: 269 RCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSAL 328

Query: 455 LAC 457
             C
Sbjct: 329 TTC 331



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C         + +H    +   +A+ ++ +  +D+Y + G  +D  Q+F E PQ
Sbjct: 325 SSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQ 384

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI-----PEPDVVSWNSMISGYASCGYSDYALE 133
           +N ++WN  + G     +   AL VFD++       P+ ++  ++I+  +  G +    E
Sbjct: 385 RNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYE 444

Query: 134 MFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLGNSLID 188
           +F  M+ + G+ P    ++ ++  +  A   +Q    I G  +R  +S+   +LG     
Sbjct: 445 LFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLG--ACK 502

Query: 189 MYGK 192
           M+GK
Sbjct: 503 MHGK 506


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/603 (27%), Positives = 298/603 (49%), Gaps = 67/603 (11%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           ++F   + IH  + + GF +  ++GN  +D+Y++                  C+      
Sbjct: 264 RAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTK------------------CV------ 299

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
                   +D A+KVF+ +P   +VSWN +I+G+   G    A+E+ S MQ  G  P+  
Sbjct: 300 -------EMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEV 352

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           T+S LL++   A   + +H                               A  +F  +  
Sbjct: 353 TYSNLLASCIKA---RDVHS------------------------------ARAMFDKISR 379

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             + +WN+L+SG       +  ++ F  M++    PD  T+++++++C+KL  LD G+QV
Sbjct: 380 PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 439

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            + SV+    ++  V S  +D++SKC ++  +  +F ++   D    N +IS    +   
Sbjct: 440 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLN 499

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + A + F+ M    I PTE + + +++S   +  + HG Q H+  +K G+D N  V S+L
Sbjct: 500 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSAL 559

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G++D +   F  +  +++V+WN ++ G  QNG   + +++FE +L     PD 
Sbjct: 560 IDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 619

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T  AVL  C++ G VDK M  F++M+  YG++P  EHY C+ID L +AG+  +   +  
Sbjct: 620 VTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIH 679

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +    IWE +L A  ++ + +L +  AE +  +   +P PY LL+  YA  GR   
Sbjct: 680 KMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGD 739

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN-AGELQHHGGQ-KIYLVLRLLTWEMEDE 625
              V+ +M   G+ K  G SWI  K+ +  F  A +L   GG+  ++     +    +DE
Sbjct: 740 ASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDLGADGGELTMFSNEDSIPQVHQDE 799

Query: 626 GCV 628
            CV
Sbjct: 800 NCV 802



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 240/496 (48%), Gaps = 59/496 (11%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
           T+L NR ++LYSR G     L  F  +P  N  S+N  L    ++ +LD A  +   +P 
Sbjct: 43  TFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPR 102

Query: 110 PDVVSWNSMISGYA-SCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQ 165
            + VSWN++IS  A S G    A+EM+ +M+ +G+ P+ FT + +LS    +++   G++
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
            HG  ++ GL  +N  + N+L+ MY K G +  A  +F  M   + +S+ +++ G   +G
Sbjct: 163 CHGVAVKVGLD-ANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTG 221

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTK--------LRNLDKGKQVFALSVKVGF 277
             + AL  F  M  SG   D  ++S V+ AC +         R    G+ + AL V+ GF
Sbjct: 222 SIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGF 281

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
            S+  V ++ ID+++KC  ++++V++FE L        N++I+ +G+ G    A+E+  L
Sbjct: 282 GSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSL 341

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           M      P E T S +L+S                                    K   +
Sbjct: 342 MQEAGFEPNEVTYSNLLASC----------------------------------IKARDV 367

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            S+  +F K+ +  + +WNT++ G  Q  +  +T+++F  +  + + PDR TLA +L +C
Sbjct: 368 HSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSC 427

Query: 458 NYGGFVDKGMLVFSA-----MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +  G +D G  V SA     +  +  V  G      ++D+  + GQ+G A  I + M  +
Sbjct: 428 SKLGILDFGRQVHSASVRFLLHNDMFVASG------LVDMYSKCGQIGIARSIFNKMT-E 480

Query: 513 PGCSIWESILRASAIY 528
                W SI+    I+
Sbjct: 481 RDVVCWNSIISGLTIH 496



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C      DF + +H    +   +   ++ +  +D+YS+ G       +F+++ +++
Sbjct: 423 ILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 482

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN                                +ISG      +  A + F +M+ 
Sbjct: 483 VVCWNS-------------------------------IISGLTIHSLNKEAFDFFKQMRE 511

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  +++ ++   S +SS  HG+QIH  +++ G    NV +G++LIDMY K G + 
Sbjct: 512 NGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYD-QNVYVGSALIDMYAKCGNMD 570

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  M   +I++WN +I G   +G G+ A++ F  M  +   PD  T   V+  C+
Sbjct: 571 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 630

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
               +DK    F ++    G +  +   +  ID   +  R  +   L  ++   D  +I
Sbjct: 631 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPII 689



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY S +I+ C    S    + IH  + K G++ + Y+G+  +D+Y++ G  DD    FD 
Sbjct: 520 SYAS-MINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 578

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYA 131
           +  KN ++WN  + G  ++   D A+++F+ +     +PD V++ ++++G +  G  D A
Sbjct: 579 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 638

Query: 132 LEMFSKMQLQ-GVRPSGFTFSILLSTVSSA 160
           +  F+ M+   G+ P    ++ L+  +  A
Sbjct: 639 MAFFNSMENSYGIIPLAEHYTCLIDALGRA 668


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/614 (29%), Positives = 316/614 (51%), Gaps = 49/614 (7%)

Query: 27  SFKSFDFAKTIHGHLFKLG--FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           S   F  A  +HG L KLG  +    Y+ +  + +Y+  G                    
Sbjct: 198 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC------------------- 238

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L+ A KVFD   E +   WN+MIS +    +S   +++F   Q     
Sbjct: 239 ------------LEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLF--FQAVESE 284

Query: 145 PSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            +      LLS +S+A H       +Q+H  +I++ ++++ V + N+LI MY +   +  
Sbjct: 285 DAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN-VAVTQVCVMNALIAMYSRCNSIDT 343

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +F +F NM E D++SWN++IS    +G  + AL  FY M+      D  T++ +++A + 
Sbjct: 344 SFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASD 403

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL--DRWDYAVIN 316
           LRN D GKQ     ++ G     +  S  ID+++K   +E +  +FE+      D A  N
Sbjct: 404 LRNPDIGKQTHGYLLRNGIQFEGMD-SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWN 462

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKS 375
            M+S Y + G  + A  + + ML + + P   TL+ +L +  P   ++ G Q H  +I++
Sbjct: 463 SMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRN 522

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             D N  VA++L++MY+K+GSI  +  +F K +++ +V+++T+++G  Q+G     L +F
Sbjct: 523 DLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMF 582

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             + + G+ PD +TL AVL AC+Y G VD+G+ +F +M+  Y + P  EH+ C+ D+L +
Sbjct: 583 HRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGR 642

Query: 496 AGQLGKAIDITSTMPFQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--Y 552
           AG++ KA +    +  +     IW S+L A  I+   +L + VA+++++++  +     +
Sbjct: 643 AGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYH 702

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL+  YA    WE +  V+K MR+ G+ K TG SWI I   +  F + + +H    +IY
Sbjct: 703 VLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQIY 762

Query: 613 LVLRLLTWEMEDEG 626
            +L  L  EM+  G
Sbjct: 763 SMLEELLMEMKHAG 776



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 230/457 (50%), Gaps = 29/457 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   ++    K +H H  +   N    + N  L++YS   ++          P 
Sbjct: 76  SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSST---------TPD 126

Query: 79  KNCIS-WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
              +S ++ C          D   KVFD + +  VV+WN++I+ Y        A++ FS 
Sbjct: 127 GKMVSGYSRC----------DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSM 176

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSN-VVLGNSLIDMYGKL 193
           M   G++PS  +F  +    SS    K    +HG +++ G    N + + +S I MY +L
Sbjct: 177 MMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAEL 236

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY-SMRYSGYSPDEYTISIV 252
           G L +A  VF N  E +   WN++IS    + +    +  F+ ++     + DE T+   
Sbjct: 237 GCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSA 296

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I+A + L+  +  +Q+ A  +K   ++   V++A I ++S+CN ++ S ++F+ +   D 
Sbjct: 297 ISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDV 356

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N MIS + + G  + AL LF  M ++D+     T++ +LS+   +   + G Q H  
Sbjct: 357 VSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGY 416

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK--LDKRDLVSWNTIMMGLTQNGRAA 429
            +++G      + S L++MYAK+G I+++  +F K    +RD  +WN++M G TQNG   
Sbjct: 417 LLRNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 475

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +   +  ++L++ + P+ +TLA++L ACN  G++D G
Sbjct: 476 QAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG 512



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 227/479 (47%), Gaps = 26/479 (5%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG--VRPSGF 148
           L +   L  A ++FD +P P  V WN++I G     + D AL  +S M+     V+   +
Sbjct: 14  LCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSY 73

Query: 149 TFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY---------GKLGVL 196
           T+S +L   +   +   GK +H   +R  ++ S +V  NSL++MY         GK+   
Sbjct: 74  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVY-NSLLNMYSMCSSTTPDGKMVSG 132

Query: 197 Y----YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
           Y        VF  M +  +++WN+LI+    +     A+ QF  M   G  P   +   V
Sbjct: 133 YSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNV 192

Query: 253 INACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
             A + L +      V  + VK+G  ++++  V+S+ I ++++   LE + ++F+     
Sbjct: 193 FPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLER 252

Query: 311 DYAVINVMISTYGRYGFGEVALEL-FQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQF 368
           +  V N MIS + +  F    ++L FQ +  ED    E T LS + ++  +   E   Q 
Sbjct: 253 NTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQL 312

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  IK+   +   V ++L+ MY++  SID+S +IF  + ++D+VSWNT++    QNG  
Sbjct: 313 HAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLN 372

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            E L +F E+ ++ L  D +T+ A+L A +     D G      +        G + Y  
Sbjct: 373 DEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY-- 430

Query: 489 IIDLLCQAGQLGKAIDI-TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           +ID+  ++G +  A ++   +   +   + W S++      G V     +  +M+D ++
Sbjct: 431 LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKV 489


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 266/489 (54%), Gaps = 7/489 (1%)

Query: 145 PSGFTF--SILLSTVSSAC--HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           PS   +  S+L S +S+     GKQ+H  + + G++  N+ L   L++ Y     L  A 
Sbjct: 55  PSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAY-NLDLATKLVNFYSVCNSLRNAH 113

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F  + + ++  WN LI     +G  E A+  ++ M   G  PD +T+  V+ AC+ L 
Sbjct: 114 HLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALS 173

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            + +G+ +    ++ G+  +  V +A +D+++KC  + D+  +F+++   D  + N M++
Sbjct: 174 TIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLA 233

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDS 379
            Y + G  + +L L   M  + +RPTE TL  V+SS   I  + HG + H    + GF  
Sbjct: 234 AYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQY 293

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           N  V ++L++MYAK GS+  +  +F +L ++ +VSWN I+ G   +G A E LD+FE ++
Sbjct: 294 NDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMM 353

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
           +E   PD IT    L AC+ G  +D+G  +++ M  +  + P  EHY C++DLL   GQL
Sbjct: 354 KEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQL 412

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            +A D+   M   P   +W ++L +   +G+V+L E   E++++L+      Y +L   Y
Sbjct: 413 DEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMY 472

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           A  G+WE + R++++M   GI K   CSWI +KN++Y F +G++ H     IY  L+ L 
Sbjct: 473 AQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLE 532

Query: 620 WEMEDEGCV 628
             M + G V
Sbjct: 533 GLMREAGYV 541



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 205/436 (47%), Gaps = 41/436 (9%)

Query: 17  YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           Y + L++ C+S K+ +  K +H  L +LG   +  L  + ++ YS               
Sbjct: 60  YYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYS--------------- 104

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                    +C       ++L  A  +FD+IP+ ++  WN +I  YA  G  + A+ ++ 
Sbjct: 105 ---------VC-------NSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYH 148

Query: 137 KMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +M   G++P  FT   +L   S +S+   G+ IH  +IRSG    +V +G +L+DMY K 
Sbjct: 149 QMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWE-RDVFVGAALVDMYAKC 207

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  VF  + + D + WNS+++    +G+ + +L     M   G  P E T+  VI
Sbjct: 208 GCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVI 267

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           ++   +  L  G+++     + GF  N  V +A ID+++KC  ++ +  LFE+L      
Sbjct: 268 SSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVV 327

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
             N +I+ Y  +G    AL+LF+ M++E  +P   T    L++      ++ G   +++ 
Sbjct: 328 SWNAIITGYAMHGLAVEALDLFERMMKE-AQPDHITFVGALAACSRGRLLDEGRALYNLM 386

Query: 373 IKSGFDSNAVVASSLM-EMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAE 430
           ++    +  V   + M ++    G +D + ++  ++D   D   W  ++     +G    
Sbjct: 387 VRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVEL 446

Query: 431 TLDVFEELLEEGLPPD 446
                E+L+E  L PD
Sbjct: 447 AEVALEKLIE--LEPD 460


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 166/605 (27%), Positives = 301/605 (49%), Gaps = 36/605 (5%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F      K IH  L +LG +  TYL N+ L     FG                       
Sbjct: 20  FSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFG----------------------- 56

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                   N + + ++ D+  EP++  +N+MI G         ++E++  M+ +G+ P  
Sbjct: 57  --------NTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDS 108

Query: 148 FTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTF  +L   +       G ++H  ++++G   ++  +  SLI++Y K G +  AF VF 
Sbjct: 109 FTFPFVLKACARVLDSELGVKMHSLVVKAGCE-ADAFVKISLINLYTKCGFIDNAFKVFD 167

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           ++ + +  SW + ISG    G    A+D F  +   G  PD +++  V++AC +  +L  
Sbjct: 168 DIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRS 227

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+ +     + G + N  V +A +D + KC  +E +  +F+ +   +    + MI  Y  
Sbjct: 228 GEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYAS 287

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            G  + AL+LF  ML E ++P  + +  VL S   +  +E G    ++   + F  N+V+
Sbjct: 288 NGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVL 347

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L++MYAK G +D + E+F  + K+D V WN  + GL  +G   + L +F ++ + G+
Sbjct: 348 GTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGI 407

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PDR T   +L AC + G V++G   F++M+  + + P  EHY C++DLL +AG L +A 
Sbjct: 408 KPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAH 467

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +  +MP +    +W ++L    ++ D +L E V ++++ L+      Y LL+  YA   
Sbjct: 468 QLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASH 527

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +WE   +++ +M + G+ K+ G SWI +   ++ F  G+  H   +KIY  L  L  +++
Sbjct: 528 KWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLK 587

Query: 624 DEGCV 628
             G V
Sbjct: 588 AAGYV 592



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 191/417 (45%), Gaps = 53/417 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C++++D  L  K       +H  + K G  A  ++    ++LY++ G  D+  ++FD
Sbjct: 115 LKACARVLDSELGVK-------MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFD 167

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           +IP KN                                 SW + ISGY   G    A++M
Sbjct: 168 DIPDKN-------------------------------FASWTATISGYVGVGKCREAIDM 196

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLI 187
           F ++   G+RP  F+    L  V SAC        G+ I   +  +G+ + NV +  +L+
Sbjct: 197 FRRLLEMGLRPDSFS----LVEVLSACKRTGDLRSGEWIDEYITENGM-VRNVFVATALV 251

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D YGK G +  A  VF  M E +I+SW+S+I G  ++G  + ALD F+ M   G  PD Y
Sbjct: 252 DFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +  V+ +C +L  L+ G     L     FL NS++ +A ID+++KC R++ +  +F  +
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGS 366
            + D  V N  IS     G  + AL LF  M +  I+P   T   +L +      VE G 
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431

Query: 367 Q-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG 421
           + F+SM               ++++  + G +D + ++   +  + + + W  ++ G
Sbjct: 432 RYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 258/444 (58%), Gaps = 2/444 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            K  HG +IR  L   +V L N LI+ Y K G +  A  VF  M E  ++SWN++I    
Sbjct: 80  AKACHGKIIRIDLE-GDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 138

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     ALD F  MR  G+   E+TIS V++AC    +  + K++  LSVK     N  
Sbjct: 139 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 198

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +DL++KC  ++D+V++FE +        + M++ Y +    E AL L++   R  
Sbjct: 199 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 258

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   +FTLS V+ +   +  +  G Q H++  KSGF SN  VASS ++MYAK GS+  S 
Sbjct: 259 LEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESY 318

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            IF ++ +++L  WNTI+ G  ++ R  E + +FE++ ++G+ P+ +T +++L  C + G
Sbjct: 319 IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTG 378

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            V++G   F  M+  YG+ P   HY+C++D+L +AG L +A ++  ++PF P  SIW S+
Sbjct: 379 LVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSL 438

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +  +Y +++L E  AE++ +L+  +   + LL+  YA   +WE I + +K++R   + 
Sbjct: 439 LASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVK 498

Query: 582 KVTGCSWIGIKNRIYTFNAGELQH 605
           KV G SWI IK++++TF+ GE  H
Sbjct: 499 KVRGKSWIDIKDKVHTFSVGESGH 522



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 173/324 (53%), Gaps = 6/324 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ +    K   ++ A +VFD + E  +VSWN+MI  Y        AL++F +M+ +G +
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159

Query: 145 PSGFTFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            S FT S +LS     C     K++H   +++ + L N+ +G +L+D+Y K G++  A  
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDL-NLYVGTALLDLYAKCGMIKDAVQ 218

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M++   ++W+S+++G   +   E AL  +   +      +++T+S VI AC+ L  
Sbjct: 219 VFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 278

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L +GKQ+ A+  K GF SN  V S+ +D+++KC  L +S  +F ++   +  + N +IS 
Sbjct: 279 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 338

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS-MAIKSGFDS 379
           + ++   +  + LF+ M ++ + P E T S +LS       VE G +F   M    G   
Sbjct: 339 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 398

Query: 380 NAVVASSLMEMYAKTGSIDSSTEI 403
           N V  S ++++  + G +  + E+
Sbjct: 399 NVVHYSCMVDILGRAGLLSEAYEL 422



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 155/342 (45%), Gaps = 6/342 (1%)

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           RYS    +   +  ++  C +   + + K      +++    +  +L+  I+ +SKC  +
Sbjct: 53  RYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFV 112

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           E + ++F+ +        N MI  Y R      AL++F  M  E  + +EFT+S VLS+ 
Sbjct: 113 ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172

Query: 358 PIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
            +        + H +++K+  D N  V ++L+++YAK G I  + ++F  +  +  V+W+
Sbjct: 173 GVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWS 232

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKE 475
           +++ G  QN    E L ++       L  ++ TL++V+ AC N    ++   +     K 
Sbjct: 233 SMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS 292

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
            +G        A  +D+  + G L ++  I S +  +    +W +I+   A +   K   
Sbjct: 293 GFGSNVFVASSA--VDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISGFAKHARPKEVM 349

Query: 536 NVAERM-MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
            + E+M  D   P+ + +S L       G  E   R  K+MR
Sbjct: 350 ILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 391



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 41/312 (13%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H    K   + + Y+G   LDLY++ G   D +Q+F+ +  K+ ++W          
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTW---------- 231

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                +SM++GY      + AL ++ + Q   +  + FT S ++
Sbjct: 232 ---------------------SSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVI 270

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S +++   GKQ+H  + +SG   SNV + +S +DMY K G L  ++ +F  ++E ++
Sbjct: 271 CACSNLAALIEGKQMHAVICKSGFG-SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 329

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
             WN++ISG       +  +  F  M+  G  P+E T S +++ C     +++G++ F L
Sbjct: 330 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 389

Query: 272 -SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI--NVMIS--TYGRYG 326
                G   N +  S  +D+  +   L ++  L + +     A I  +++ S   Y    
Sbjct: 390 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 449

Query: 327 FGEVALE-LFQL 337
             EVA E LF+L
Sbjct: 450 LAEVAAEKLFEL 461



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 40/227 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C +  +    K +H  + K GF ++ ++ +  +D+Y++ G+  +   +F E+ +
Sbjct: 267 SSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 326

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN   W                               N++ISG+A        + +F KM
Sbjct: 327 KNLELW-------------------------------NTIISGFAKHARPKEVMILFEKM 355

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLG 194
           Q  G+ P+  TFS LLS          G++    ++R+   LS NVV  + ++D+ G+ G
Sbjct: 356 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAG 414

Query: 195 VLYYAFGVFLNMEELDIIS-WNSLISGCF---NSGYGELALDQFYSM 237
           +L  A+ +  ++      S W SL++ C    N    E+A ++ + +
Sbjct: 415 LLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFEL 461


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/599 (29%), Positives = 309/599 (51%), Gaps = 41/599 (6%)

Query: 37  IHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           +H  L + G  NA   +GN  +++Y++ G  +D            C+             
Sbjct: 410 VHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDA-----------CV------------- 445

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
                  VF  +   D V+WNSMI+G         A++ F +M+   + PS FT    LS
Sbjct: 446 -------VFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 156 TVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           + +S      G+Q+H   ++ GL L +V + N+L+ +YG+ G +      F  M + D +
Sbjct: 499 SCASLGWISVGEQLHCEGLKLGLDL-DVSVSNALLALYGECGYVKECQKAFSLMLDYDHV 557

Query: 213 SWNSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           SWNSLI    +S    L A++ F  M  +G+ P+  T   ++ A + L   + GKQ+ AL
Sbjct: 558 SWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHAL 617

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEV 330
            +K    +++ + +A +  + KC  +     +F ++ DR D    N MIS Y        
Sbjct: 618 VLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPK 677

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+++   M+++  R   FT + VLS+   +  +E G + H  ++++  +S+ V+ S+L++
Sbjct: 678 AMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVD 737

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G ID ++  F  +  R+L SWN+++ G  ++G   ++LD+F ++  +G  PD +T
Sbjct: 738 MYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVT 797

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              VL AC++ G V++G   F +M E YG+ P  EH++C++DLL + G+L K  D  + M
Sbjct: 798 FVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQM 857

Query: 510 PFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
           P +P   IW ++L A   A   +  L    AE +++++  + + Y LL+  YA  G+W+ 
Sbjct: 858 PVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDD 917

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + + +  MRK  + K  GCSW+ +K+ ++ F AG+  H     IY  L+ L  +M   G
Sbjct: 918 VAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAG 976



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 217/456 (47%), Gaps = 61/456 (13%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +H  LFK GF    +L N  +++Y+R G      ++FDE+P +N +SW+ CL     
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWS-CL----- 145

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                    ISGY      + A E+F KM   G  P+ + F   
Sbjct: 146 -------------------------ISGYTRNRMPNEACELFRKMVSDGFMPNHYAF--- 177

Query: 154 LSTVSSACH---------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVF 203
             +V  AC          G QIHG M ++   +++V   N LI MYG  LG++ YA   F
Sbjct: 178 -GSVIRACQECGEYGLKFGMQIHGLMSKTQY-VNDVTASNVLISMYGNALGMVDYARRAF 235

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS----GYSPDEYTISIVINACTKL 259
            ++   +++S NS+IS     G    A D F +M+      G  P+EYT   +I+A   L
Sbjct: 236 DSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSL 295

Query: 260 RN--LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            N  L   +Q+     K GFL +  V SA +  F+K   +  +  +F+++   +   +N 
Sbjct: 296 ANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNG 355

Query: 318 MISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIPIPPV-----EHGSQFHSM 371
           +I    R   GE A+ELF  M    ++ P  + +  +L++ P   V       GS+ H+ 
Sbjct: 356 LIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPEFHVLENGKRKGSEVHAF 413

Query: 372 AIKSG-FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            I+SG  ++   + + L+ MYAK G+I+ +  +F  +D +D V+WN+++ GL QN +  E
Sbjct: 414 LIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLE 473

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            +  F+E+    L P   T+ + L +C   G++  G
Sbjct: 474 AVKTFQEMRRTELYPSNFTMISALSSCASLGWISVG 509



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 230/475 (48%), Gaps = 22/475 (4%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G  K+ ++  A  +F ++   +VVS N +I G       + A+E+F +M+   V  +  +
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK-DSVELNPNS 386

Query: 150 FSILLSTV-------SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           + I+L+         +    G ++H  +IRSGL  + + +GN LI+MY K G +  A  V
Sbjct: 387 YMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVV 446

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  M+  D ++WNS+I+G   +     A+  F  MR +   P  +T+   +++C  L  +
Sbjct: 447 FRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWI 506

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             G+Q+    +K+G   +  V +A + L+ +C  +++  + F  +  +D+   N +I   
Sbjct: 507 SVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGAL 566

Query: 323 GRYGFGEV-ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSN 380
                  + A+E F +M+R    P   T   +L+++  +   E G Q H++ +K    ++
Sbjct: 567 ADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAAD 626

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
             + ++L+  Y K G +     IF ++ D++D VSWN+++ G   N    + +D+   ++
Sbjct: 627 TAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMM 686

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQA 496
           ++G   D  T A VL AC     +++GM V         E  ++ G    + ++D+  + 
Sbjct: 687 QKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIG----SALVDMYAKC 742

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           G++  A      MP +   S W S++   A +G    + ++  +M   +L  PLP
Sbjct: 743 GRIDYASRFFEMMPARNLYS-WNSMISGYARHGHGTKSLDLFAQM---KLQGPLP 793



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 33/178 (18%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
             + H    K+GF ++  + ++L+ +YA+ G + S  ++F ++  R+LVSW+ ++ G T+
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG--FVDKGMLVFSAMKEE------ 476
           N    E  ++F +++ +G  P+     +V+ AC   G   +  GM +   M +       
Sbjct: 152 NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 477 ---------YGVMPGEEHYA----------------CIIDLLCQAGQLGKAIDITSTM 509
                    YG   G   YA                 +I + CQ G    A DI STM
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 53/216 (24%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  + +    +HG   +    +   +G+  +D+Y++ G  D   + F+ +P 
Sbjct: 698 ATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPA 757

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N  SWN                               SMISGYA  G+   +L++F++M
Sbjct: 758 RNLYSWN-------------------------------SMISGYARHGHGTKSLDLFAQM 786

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNV---VLG--------NSLI 187
           +LQG  P   TF  +LS  S        H  ++  G S  +    + G        + ++
Sbjct: 787 KLQGPLPDHVTFVGVLSACS--------HAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMV 838

Query: 188 DMYGKLGVLYYAFGVFLNMEEL--DIISWNSLISGC 221
           D+ G++G L      FLN   +  +++ W +++  C
Sbjct: 839 DLLGRVGEL-NKMEDFLNQMPVKPNVLIWRTVLGAC 873


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 169/540 (31%), Positives = 284/540 (52%), Gaps = 7/540 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D+ ++A  V    P  +VVSW S++SG A  G+   AL  F +M+ +GV P+ FTF  
Sbjct: 54  KLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPC 113

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +   V+S      GKQIH   ++ G  L +V +G S  DMY K  +   A  +F  + E 
Sbjct: 114 VFKAVASLRLPVTGKQIHALAVKCGRIL-DVFVGCSAFDMYCKTRLRDDARKLFDEIPER 172

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ +WN+ IS     G  + A++ F   R  G  P+  T    +NAC+    LD G Q+ 
Sbjct: 173 NLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMH 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L  + GF ++  V +  ID + KC ++  S  +F ++   +      +++ Y +    E
Sbjct: 233 GLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDE 292

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  L+    +E +  ++F +S VLS+   +  +E G   H+ A+K+  + N  V S+L+
Sbjct: 293 KASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALV 352

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL--PPD 446
           +MY K G I+ S + F ++ +++LV+ N+++ G    G+    L +FE++   G    P+
Sbjct: 353 DMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPN 412

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T  ++L AC+  G V+ GM +F +MK  YG+ PG EHY+CI+D+L +AG + +A +  
Sbjct: 413 YMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFI 472

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP +P  S+W ++  A  ++G   L    AE +  L       + LL+  +A  GRW 
Sbjct: 473 KKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWA 532

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V++ M+  GI K  G SWI +KN+++ F A +  H   ++I  +L  L  +ME  G
Sbjct: 533 EANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAG 592



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 182/412 (44%), Gaps = 46/412 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    K G     ++G    D+Y +    DD  +LFDEIP++               
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER--------------- 172

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            NL+T               WN+ IS   + G    A+E F + +  G +P+  TF   L
Sbjct: 173 -NLET---------------WNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFL 216

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S       G Q+HG + RSG   ++V + N LID YGK   +  +  +F  M   + 
Sbjct: 217 NACSDGLLLDLGMQMHGLVFRSGFD-TDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNA 275

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW SL++    +   E A   +   R       ++ IS V++AC  +  L+ G+ + A 
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAH 335

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK     N  V SA +D++ KC  +EDS + F+++   +   +N +I  Y   G  ++A
Sbjct: 336 AVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMA 395

Query: 332 LELFQLMLREDIRPTE--FTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSL 387
           L LF+ M      P     T   +LS+      VE+G + F SM    G +  A   S +
Sbjct: 396 LALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCI 455

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGR------AAETL 432
           ++M  + G ++ + E   K+  +  +S W  +      +G+      AAE L
Sbjct: 456 VDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENL 507



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 1/303 (0%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           + SS   G+ +H  ++++  S     L N LI+MY KL     A  V       +++SW 
Sbjct: 18  STSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWT 77

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           SL+SG   +G+   AL +F+ MR  G +P+++T   V  A   LR    GKQ+ AL+VK 
Sbjct: 78  SLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKC 137

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G + +  V  +  D++ K    +D+ +LF+++   +    N  IS     G  + A+E F
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAF 197

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
               R   +P   T    L++      ++ G Q H +  +SGFD++  V + L++ Y K 
Sbjct: 198 IEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKC 257

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
             I SS  IF ++  ++ VSW +++    QN    +   ++    +E +      +++VL
Sbjct: 258 KQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVL 317

Query: 455 LAC 457
            AC
Sbjct: 318 SAC 320



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 139/320 (43%), Gaps = 53/320 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S+++C   ++ C      D    +HG +F+ GF+    + N  +D Y +         +F
Sbjct: 209 SITFCG-FLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIF 267

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            E+  KN                                VSW S+++ Y      + A  
Sbjct: 268 AEMGMKN-------------------------------AVSWCSLVAAYVQNHEDEKASV 296

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSL 186
           ++ + + + V  S F    ++S+V SAC        G+ IH   +++ +   N+ +G++L
Sbjct: 297 LYLRSRKEIVETSDF----MISSVLSACAGMAGLELGRSIHAHAVKACVE-RNIFVGSAL 351

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM--RYSGYSP 244
           +DMYGK G +  +   F  M E ++++ NSLI G  + G  ++AL  F  M  R  G +P
Sbjct: 352 VDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAP 411

Query: 245 DEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           +  T   +++AC++   ++ G ++F ++    G    +   S  +D+  +   +E +   
Sbjct: 412 NYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEF 471

Query: 304 FEQLDRWDYAVINVMISTYG 323
            +++       I   IS +G
Sbjct: 472 IKKMP------IKPTISVWG 485


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 169/568 (29%), Positives = 300/568 (52%), Gaps = 13/568 (2%)

Query: 70  LQLFDEIPQKNCISWNICLRGLLK--SDN--LDTALKVFDEIPEPDVVSWNSMISGYASC 125
           +QL     + N I+    L  LL   SDN  L+++  +F+ +P  D   WNSMIS Y   
Sbjct: 282 MQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGF 341

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS----SACHGKQIHGSMIRSGLSLSNVV 181
           G+   A+ +F KM+L+ ++    T +I+LS  +     +  G+ +H   ++SG+ L +  
Sbjct: 342 GFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIEL-DAY 400

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           LGN+L+ MY K   +  A  VF  M  LD+ISWN++IS    S +   A + F  M  S 
Sbjct: 401 LGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESE 460

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              + YTI  ++  C    +L  G+ +   ++K G   N+ + ++  +++  C     + 
Sbjct: 461 IKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAAT 520

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIP 360
            +F +  + D    N +IS+Y +      AL LF  M+ E + P   T+  +L+S   + 
Sbjct: 521 NMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLA 579

Query: 361 PVEHGSQFHSMAIKS--GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            +  G   H+   +     + +A +A++ + MYA+ G +  + +IF  L  R +VSWN +
Sbjct: 580 HLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAM 639

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GR  +    F ++L++G  P+ ++ A+VL AC++ G    G+ +F +M  ++G
Sbjct: 640 ITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFG 699

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + P   HY C++DLL + G   +AI   ++MP +P  SIW ++L +  I  + KL E + 
Sbjct: 700 IAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIF 759

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
            ++++L+  +P  + LL+  YA  G W  +V+++K +R+ G+ K  G SWI I N+++ F
Sbjct: 760 GKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHF 819

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            A ++ H   ++IY  L  LT  + D G
Sbjct: 820 TATDVLHPQSERIYENLNSLTSLIRDLG 847



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 201/394 (51%), Gaps = 19/394 (4%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVF E+PE D+VSWN++ISGY  C     A+ +F +M+  G+ P+  T   LL     
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGE 173

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G++IHG  +R+GL   +  +G +L+  Y +   +  +  VF  M   +I+SWN+
Sbjct: 174 MLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVL-SHRVFSLMLVRNIVSWNA 232

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G  N G    AL  + SM   G   D  T+ +VI AC +   L  G Q+  L++K  
Sbjct: 233 IITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            +++  +L+A ++++S    LE S  LF  +   D A+ N MIS+Y  +GF   A+ LF 
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFI 352

Query: 337 LM----LREDIRPTEFTLSCV--LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            M    ++ED+R     LS    L+   I     G   H+ A+KSG + +A + ++L+ M
Sbjct: 353 KMRLERIKEDVRTIAIMLSLCNDLNDGSI----WGRGLHAHAMKSGIELDAYLGNALLSM 408

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K   I ++  +F K+   D++SWNT++    Q+   A+  ++F  + E  +  +  T+
Sbjct: 409 YVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTI 468

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
            ++L  C      D   LVF      + +  G E
Sbjct: 469 VSLLAFCK-----DGSDLVFGRSIHGFAIKNGLE 497



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/548 (23%), Positives = 252/548 (45%), Gaps = 47/548 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRF 63
           +KKA +   S +  + L+  C         + IHG+  + G F+   Y+G   +  Y RF
Sbjct: 152 MKKAGLTPNSRTVVALLL-ACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF 210

Query: 64  GTSDDVL--QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
              D VL  ++F  +  +N +SWN                               ++I+G
Sbjct: 211 ---DAVLSHRVFSLMLVRNIVSWN-------------------------------AIITG 236

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSGLSLS 178
           + + G    AL+++S M ++G++    T  +++   +   C   G Q+H   I+  L ++
Sbjct: 237 FLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNL-IN 295

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           ++ + N+L++MY   G L  ++ +F  +   D   WNS+IS     G+   A+  F  MR
Sbjct: 296 DLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMR 355

Query: 239 YSGYSPDEYTISIVINACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
                 D  TI+I+++ C  L +    G+ + A ++K G   ++ + +A + ++ K N++
Sbjct: 356 LERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQI 415

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +  +FE++   D    N MIS + +  F   A ELF +M   +I+   +T+  +L+  
Sbjct: 416 TAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475

Query: 358 PI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
                +  G   H  AIK+G + N  + +SL EMY   G   ++T +F +  +RDLVSWN
Sbjct: 476 KDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWN 535

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKE 475
           +++    +N  A + L +F  ++ E L P+ +T+  +L +C     +  G  + +   + 
Sbjct: 536 SLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRR 594

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
           E  +          I +  + G+L  A  I  T+  +   S W +++    ++G  +   
Sbjct: 595 EVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVS-WNAMITGYGMHGRGRDAT 653

Query: 536 NVAERMMD 543
               +M+D
Sbjct: 654 LAFAQMLD 661



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 179/350 (51%), Gaps = 9/350 (2%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMI 171
           WNS+I  +         L  +++M+  G+ P   T  ++L     +++  +G +IH S I
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIH-SFI 86

Query: 172 RSGLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           R GL L N V +G +L+D Y K G++  A  VF+ M E D++SWN+LISG       + A
Sbjct: 87  R-GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATID 289
           +  F  M+ +G +P+  T+  ++ AC ++  L  G+++    ++ G F  ++ V +A + 
Sbjct: 146 VLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
            + + + +  S R+F  +   +    N +I+ +   G    AL+L+  ML E I+    T
Sbjct: 206 FYMRFDAVL-SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVT 264

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           +  V+ +      +  G Q H +AIK    ++  + ++L+ MY+  GS++SS  +F  + 
Sbjct: 265 MLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP 324

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             D   WN+++      G  AE + +F ++  E +  D  T+A +L  CN
Sbjct: 325 TSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 197/454 (43%), Gaps = 53/454 (11%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C+ L D  +      + + +H H  K G     YLGN  L +Y              
Sbjct: 370 LSLCNDLNDGSI------WGRGLHAHAMKSGIELDAYLGNALLSMY-------------- 409

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                            +K + +  A  VF+++   DV+SWN+MIS +A   +   A E+
Sbjct: 410 -----------------VKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFEL 452

Query: 135 FSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M    ++ + +T   LL+     S    G+ IHG  I++GL + N  L  SL +MY 
Sbjct: 453 FLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEI-NTSLNTSLTEMYI 511

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
             G    A  +F    + D++SWNSLIS    +     AL  F  M  S   P+  TI  
Sbjct: 512 NCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM-ISELEPNSVTIIN 570

Query: 252 VINACTKLRNLDKGKQVFALSVK--VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           ++ +CT+L +L  G+ + A + +  V    ++ + +A I ++++C +L+ + ++F  L  
Sbjct: 571 ILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQT 630

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQ- 367
                 N MI+ YG +G G  A   F  ML +  +P   + + VLS+     +   G Q 
Sbjct: 631 RSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQL 690

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG--LTQ 424
           FHSM    G          ++++  + G    +      +  + D   W  ++    +  
Sbjct: 691 FHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKS 750

Query: 425 NGRAAETLDVFEEL--LEEGLPPDRITLAAVLLA 456
           N +  ET  +F +L  LE   P + I L+ +  A
Sbjct: 751 NNKLLET--IFGKLVELEPSNPGNFILLSNIYAA 782



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 5/257 (1%)

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I            L  +  M   G +PD  T+ +V+ AC +L  +  G ++ +   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY-GRYGFGEVAL 332
            +  +++  V +A +D + KC  + ++ ++F ++   D    N +IS Y G   + E  L
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 333 ELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSG-FDSNAVVASSLMEM 390
            LF  M +  + P   T+ + +L+   +  +  G + H   +++G FD +A V ++L+  
Sbjct: 148 -LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGF 206

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y +  ++ S   +F  +  R++VSWN I+ G    G  A+ L ++  +L EG+  D +T+
Sbjct: 207 YMRFDAVLSH-RVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTM 265

Query: 451 AAVLLACNYGGFVDKGM 467
             V+ AC   G +  GM
Sbjct: 266 LVVIQACAEYGCLRLGM 282


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 195/694 (28%), Positives = 315/694 (45%), Gaps = 116/694 (16%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKT--IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           A L      I  CL+  +   ++T   H H+ K G    T+L  + L  Y+         
Sbjct: 9   ALLDSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN-------- 60

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                         N+C          D  L V D +PEP+V S++++I  ++      +
Sbjct: 61  --------------NMCFA--------DATL-VLDLVPEPNVFSFSTLIYAFSKFHQFHH 97

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLG 183
           AL  FS+M  +G+ P     + +L +   AC G       +Q+HG    SG   S+  + 
Sbjct: 98  ALSTFSQMLTRGLMPD----NRVLPSAVKACAGLSALKPARQVHGIASVSGFD-SDSFVQ 152

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDI-------------------------------- 211
           +SL+ MY K   +  A  VF  M E D+                                
Sbjct: 153 SSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQ 212

Query: 212 ---ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
              ISWN +I+G  +SG    A+  F  M   G+ PD  TIS V+ A   L +L  G  +
Sbjct: 213 PNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILI 272

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G +S+  V SA ID++ KC+   +  ++F+Q+D  D    N  I    R G  
Sbjct: 273 HGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQV 332

Query: 329 EV-----------------------------------ALELFQLMLREDIRPTEFTLSCV 353
           E                                    ALELF+ M    ++P   T+ C+
Sbjct: 333 ESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCL 392

Query: 354 LSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           L +   I  + HG   H  +++ G  ++  V S+L++MYAK G I +S   F  +  ++L
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           V WN ++ G   +G+A E +++F+ +   G  PD I+   VL AC+  G  ++G   F++
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M  +YG+    EHYAC++ LL +AG+L +A  +   MP  P   +W ++L +  ++ +V 
Sbjct: 513 MSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVS 572

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           L E  AE++ +L+  +P  Y LL+  YA +G W  + RV+ +M+  G+ K  GCSWI +K
Sbjct: 573 LGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVK 632

Query: 593 NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           N+++   AG+  H    +I   L  L+ EM+  G
Sbjct: 633 NKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLG 666


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 169/568 (29%), Positives = 300/568 (52%), Gaps = 13/568 (2%)

Query: 70  LQLFDEIPQKNCISWNICLRGLLK--SDN--LDTALKVFDEIPEPDVVSWNSMISGYASC 125
           +QL     + N I+    L  LL   SDN  L+++  +F+ +P  D   WNSMIS Y   
Sbjct: 282 MQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGF 341

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS----SACHGKQIHGSMIRSGLSLSNVV 181
           G+   A+ +F KM+L+ ++    T +I+LS  +     +  G+ +H   ++SG+ L +  
Sbjct: 342 GFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIEL-DAY 400

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           LGN+L+ MY K   +  A  VF  M  LD+ISWN++IS    S +   A + F  M  S 
Sbjct: 401 LGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESE 460

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              + YTI  ++  C    +L  G+ +   ++K G   N+ + ++  +++  C     + 
Sbjct: 461 IKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAAT 520

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIP 360
            +F +  + D    N +IS+Y +      AL LF  M+ E + P   T+  +L+S   + 
Sbjct: 521 NMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLA 579

Query: 361 PVEHGSQFHSMAIKS--GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
            +  G   H+   +     + +A +A++ + MYA+ G +  + +IF  L  R +VSWN +
Sbjct: 580 HLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAM 639

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G   +GR  +    F ++L++G  P+ ++ A+VL AC++ G    G+ +F +M  ++G
Sbjct: 640 ITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFG 699

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
           + P   HY C++DLL + G   +AI   ++MP +P  SIW ++L +  I  + KL E + 
Sbjct: 700 IAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIF 759

Query: 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
            ++++L+  +P  + LL+  YA  G W  +V+++K +R+ G+ K  G SWI I N+++ F
Sbjct: 760 GKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHF 819

Query: 599 NAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            A ++ H   ++IY  L  LT  + D G
Sbjct: 820 TATDVLHPQSERIYENLNSLTSLIRDLG 847



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 200/392 (51%), Gaps = 15/392 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A KVF E+PE D+VSWN++ISGY  C     A+ +F +M+  G+ P+  T   LL     
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGE 173

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G++IHG  +R+GL   +  +G +L+  Y +   +  +  VF  M   +I+SWN+
Sbjct: 174 MLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVL-SHRVFSLMLVRNIVSWNA 232

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G  N G    AL  + SM   G   D  T+ +VI AC +   L  G Q+  L++K  
Sbjct: 233 IITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            +++  +L+A ++++S    LE S  LF  +   D A+ N MIS+Y  +GF   A+ LF 
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFI 352

Query: 337 LM----LREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            M    ++ED+R     LS  L +        G   H+ A+KSG + +A + ++L+ MY 
Sbjct: 353 KMRLERIKEDVRTIAIMLS--LCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYV 410

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   I ++  +F K+   D++SWNT++    Q+   A+  ++F  + E  +  +  T+ +
Sbjct: 411 KHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVS 470

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +L  C      D   LVF      + +  G E
Sbjct: 471 LLAFCK-----DGSDLVFGRSIHGFAIKNGLE 497



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/548 (23%), Positives = 252/548 (45%), Gaps = 47/548 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRF 63
           +KKA +   S +  + L+  C         + IHG+  + G F+   Y+G   +  Y RF
Sbjct: 152 MKKAGLTPNSRTVVALLL-ACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF 210

Query: 64  GTSDDVL--QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
              D VL  ++F  +  +N +SWN                               ++I+G
Sbjct: 211 ---DAVLSHRVFSLMLVRNIVSWN-------------------------------AIITG 236

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSGLSLS 178
           + + G    AL+++S M ++G++    T  +++   +   C   G Q+H   I+  L ++
Sbjct: 237 FLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNL-IN 295

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           ++ + N+L++MY   G L  ++ +F  +   D   WNS+IS     G+   A+  F  MR
Sbjct: 296 DLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMR 355

Query: 239 YSGYSPDEYTISIVINACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
                 D  TI+I+++ C  L +    G+ + A ++K G   ++ + +A + ++ K N++
Sbjct: 356 LERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQI 415

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +  +FE++   D    N MIS + +  F   A ELF +M   +I+   +T+  +L+  
Sbjct: 416 TAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475

Query: 358 PI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
                +  G   H  AIK+G + N  + +SL EMY   G   ++T +F +  +RDLVSWN
Sbjct: 476 KDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWN 535

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKE 475
           +++    +N  A + L +F  ++ E L P+ +T+  +L +C     +  G  + +   + 
Sbjct: 536 SLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRR 594

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
           E  +          I +  + G+L  A  I  T+  +   S W +++    ++G  +   
Sbjct: 595 EVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVS-WNAMITGYGMHGRGRDAT 653

Query: 536 NVAERMMD 543
               +M+D
Sbjct: 654 LAFAQMLD 661



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 179/350 (51%), Gaps = 9/350 (2%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMI 171
           WNS+I  +         L  +++M+  G+ P   T  ++L     +++  +G +IH S I
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIH-SCI 86

Query: 172 RSGLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           R GL L N V +G +L+D Y K G++  A  VF+ M E D++SWN+LISG       + A
Sbjct: 87  R-GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATID 289
           +  F  M+ +G +P+  T+  ++ AC ++  L  G+++    ++ G F  ++ V +A + 
Sbjct: 146 VLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
            + + + +  S R+F  +   +    N +I+ +   G    AL+L+  ML E I+    T
Sbjct: 206 FYMRFDAVL-SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVT 264

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           +  V+ +      +  G Q H +AIK    ++  + ++L+ MY+  GS++SS  +F  + 
Sbjct: 265 MLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP 324

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             D   WN+++      G  AE + +F ++  E +  D  T+A +L  CN
Sbjct: 325 TSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 197/454 (43%), Gaps = 53/454 (11%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS C+ L D  +      + + +H H  K G     YLGN  L +Y              
Sbjct: 370 LSLCNDLNDGSI------WGRGLHAHAMKSGIELDAYLGNALLSMY-------------- 409

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                            +K + +  A  VF+++   DV+SWN+MIS +A   +   A E+
Sbjct: 410 -----------------VKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFEL 452

Query: 135 FSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           F  M    ++ + +T   LL+     S    G+ IHG  I++GL + N  L  SL +MY 
Sbjct: 453 FLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEI-NTSLNTSLTEMYI 511

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
             G    A  +F    + D++SWNSLIS    +     AL  F  M  S   P+  TI  
Sbjct: 512 NCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM-ISELEPNSVTIIN 570

Query: 252 VINACTKLRNLDKGKQVFALSVK--VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           ++ +CT+L +L  G+ + A + +  V    ++ + +A I ++++C +L+ + ++F  L  
Sbjct: 571 ILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQT 630

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQ- 367
                 N MI+ YG +G G  A   F  ML +  +P   + + VLS+     +   G Q 
Sbjct: 631 RSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQL 690

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMG--LTQ 424
           FHSM    G          ++++  + G    +      +  + D   W  ++    +  
Sbjct: 691 FHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKS 750

Query: 425 NGRAAETLDVFEEL--LEEGLPPDRITLAAVLLA 456
           N +  ET  +F +L  LE   P + I L+ +  A
Sbjct: 751 NNKLLET--IFGKLVELEPSNPGNFILLSNIYAA 782



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 5/257 (1%)

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I            L  +  M   G +PD  T+ +V+ AC +L  +  G ++ +   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY-GRYGFGEVAL 332
            +  +++  V +A +D + KC  + ++ ++F ++   D    N +IS Y G   + E  L
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 333 ELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSG-FDSNAVVASSLMEM 390
            LF  M +  + P   T+ + +L+   +  +  G + H   +++G FD +A V ++L+  
Sbjct: 148 -LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGF 206

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y +  ++ S   +F  +  R++VSWN I+ G    G  A+ L ++  +L EG+  D +T+
Sbjct: 207 YMRFDAVLSH-RVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTM 265

Query: 451 AAVLLACNYGGFVDKGM 467
             V+ AC   G +  GM
Sbjct: 266 LVVIQACAEYGCLRLGM 282


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 182/614 (29%), Positives = 297/614 (48%), Gaps = 38/614 (6%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           CS L+  C S   F     IH    +   ++   + N  +++YS  G   D   LF    
Sbjct: 250 CS-LMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF---- 304

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                 WN+  R                     D++SWN+MIS Y     S  AL+   +
Sbjct: 305 ------WNMSRR---------------------DLISWNTMISSYVQNCNSTDALKTLGQ 337

Query: 138 MQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +      P+  TFS  L   SS      GK +H  +++  L   N+++GNSLI MYGK  
Sbjct: 338 LFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ-RNLLVGNSLITMYGKCN 396

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  VF +M   DI+S+N LI G      G  A+  F  MR +G  P+  T+  +  
Sbjct: 397 SMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHG 456

Query: 255 ACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +     +L   G+ + A  ++ GFLS+  V ++ I +++KC  LE S  +F  +   +  
Sbjct: 457 SFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIV 516

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMA 372
             N +I+   + G GE AL+LF  M     +     L+ C+ S   +  +E G Q H + 
Sbjct: 517 SWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLG 576

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +KSG DS++ V ++ M+MY K G +D   ++      R    WNT++ G  + G   E  
Sbjct: 577 MKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAE 636

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           + F++++  G  PD +T  A+L AC++ G VDKG+  +++M   +GV PG +H  CI+DL
Sbjct: 637 ETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDL 696

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L + G+  +A      MP  P   IW S+L +S  + ++++    A+++++L       Y
Sbjct: 697 LGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAY 756

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL+  YA   RW  + +++  M+   INK   CSW+ +KN + TF  G+  H   +KIY
Sbjct: 757 VLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIY 816

Query: 613 LVLRLLTWEMEDEG 626
             L  +  ++ + G
Sbjct: 817 AKLDEMLLKLREVG 830



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 227/448 (50%), Gaps = 8/448 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A K+FD + E D +SWN+MIS Y+  G       +FS M+  G+RP   T   L+S  +S
Sbjct: 199 AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 258

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +    HG  IH   +RS L  S+V + N+L++MY   G L  A  +F NM   D+ISWN+
Sbjct: 259 SDHFSHGSGIHSLCLRSSLD-SSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT 317

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +IS    +     AL     + ++  SP+  T S  + AC+    L  GK V A+ +++ 
Sbjct: 318 MISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLS 377

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              N +V ++ I ++ KCN +ED+ ++F+ +   D    NV+I  Y     G  A+++F 
Sbjct: 378 LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFS 437

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEH--GSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
            M    I+P   T+  +  S       H  G   H+  I++GF S+  VA+SL+ MYAK 
Sbjct: 438 WMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKC 497

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G+++SST IF  +  +++VSWN I+    Q G   E L +F ++   G   DR+ LA  L
Sbjct: 498 GNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECL 557

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            +C     +++GM +   +  + G+          +D+  + G++ + + +      +P 
Sbjct: 558 SSCASLASLEEGMQLH-GLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 616

Query: 515 CSIWESILRASAIYGDVKLTENVAERMM 542
              W +++   A YG  K  E   ++M+
Sbjct: 617 -QCWNTLISGYAKYGYFKEAEETFKQMV 643



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 181/367 (49%), Gaps = 12/367 (3%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS-------ACHGKQI 166
           +W + +SG   CG    A EM   M+ +GV  SGF  + L++           AC G  I
Sbjct: 8   TWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIAC-GAAI 66

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H    R+GL + NV +G +L+ +YG  G++  A  +F  M E +++SW +L+    ++GY
Sbjct: 67  HALTHRAGL-MGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGY 125

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E AL  +  MR  G   +    + V++ C  L N   G QV +  +  G  +   V ++
Sbjct: 126 LEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANS 185

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            I +F    R+ D+ +LF++++  D    N MIS Y   G       +F  M    +RP 
Sbjct: 186 LITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPD 245

Query: 347 EFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             TL C L S+        HGS  HS+ ++S  DS+  V ++L+ MY+  G +  +  +F
Sbjct: 246 ATTL-CSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF 304

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             + +RDL+SWNT++    QN  + + L    +L      P+ +T ++ L AC+  G + 
Sbjct: 305 WNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALI 364

Query: 465 KGMLVFS 471
            G +V +
Sbjct: 365 DGKMVHA 371



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 37/214 (17%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           NK      ++ +  C S  S +    +HG   K G ++ +Y+ N  +D+Y + G  D++L
Sbjct: 546 NKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEML 605

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           Q+   +P                    D A++     P+     WN++ISGYA  GY   
Sbjct: 606 QV---VP--------------------DQAIR-----PQQ---CWNTLISGYAKYGYFKE 634

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           A E F +M   G +P   TF  LLS  S A     G   + SM  S      +     ++
Sbjct: 635 AEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIV 694

Query: 188 DMYGKLGVLYYAFGVFLNMEEL--DIISWNSLIS 219
           D+ G+LG    A      M  L  D+I W SL+S
Sbjct: 695 DLLGRLGRFAEAEKFIEEMPVLPNDLI-WRSLLS 727


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 182/614 (29%), Positives = 297/614 (48%), Gaps = 38/614 (6%)

Query: 18   CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
            CS L+  C S   F     IH    +   ++   + N  +++YS  G   D   LF    
Sbjct: 552  CS-LMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF---- 606

Query: 78   QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                  WN+  R                     D++SWN+MIS Y     S  AL+   +
Sbjct: 607  ------WNMSRR---------------------DLISWNTMISSYVQNCNSTDALKTLGQ 639

Query: 138  MQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
            +      P+  TFS  L   SS      GK +H  +++  L   N+++GNSLI MYGK  
Sbjct: 640  LFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ-RNLLVGNSLITMYGKCN 698

Query: 195  VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
             +  A  VF +M   DI+S+N LI G      G  A+  F  MR +G  P+  T+  +  
Sbjct: 699  SMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHG 758

Query: 255  ACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            +     +L   G+ + A  ++ GFLS+  V ++ I +++KC  LE S  +F  +   +  
Sbjct: 759  SFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIV 818

Query: 314  VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMA 372
              N +I+   + G GE AL+LF  M     +     L+ C+ S   +  +E G Q H + 
Sbjct: 819  SWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLG 878

Query: 373  IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            +KSG DS++ V ++ M+MY K G +D   ++      R    WNT++ G  + G   E  
Sbjct: 879  MKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAE 938

Query: 433  DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            + F++++  G  PD +T  A+L AC++ G VDKG+  +++M   +GV PG +H  CI+DL
Sbjct: 939  ETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDL 998

Query: 493  LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
            L + G+  +A      MP  P   IW S+L +S  + ++++    A+++++L       Y
Sbjct: 999  LGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAY 1058

Query: 553  SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
             LL+  YA   RW  + +++  M+   INK   CSW+ +KN + TF  G+  H   +KIY
Sbjct: 1059 VLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIY 1118

Query: 613  LVLRLLTWEMEDEG 626
              L  +  ++ + G
Sbjct: 1119 AKLDEMLLKLREVG 1132



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 152/582 (26%), Positives = 258/582 (44%), Gaps = 78/582 (13%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
            IH    + G   + Y+G   L LY   G   D  +LF E+P++N +SW   +  L  + 
Sbjct: 367 AIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNG 426

Query: 96  NLDTALKVF--------------------------DEIPEPDVVSW-------------N 116
            L+ AL+ +                          +E+P   V S              N
Sbjct: 427 YLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVAN 486

Query: 117 SMISGYASCGYSDYALEMF-------------------------------SKMQLQGVRP 145
           S+I+ + + G    A ++F                               S M+  G+RP
Sbjct: 487 SLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRP 546

Query: 146 SGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
              T   L+S  +S+    HG  IH   +RS L  S+V + N+L++MY   G L  A  +
Sbjct: 547 DATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLD-SSVTVINALVNMYSAAGKLSDAEFL 605

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F NM   D+ISWN++IS    +     AL     + ++  SP+  T S  + AC+    L
Sbjct: 606 FWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGAL 665

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
             GK V A+ +++    N +V ++ I ++ KCN +ED+ ++F+ +   D    NV+I  Y
Sbjct: 666 IDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGY 725

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH--GSQFHSMAIKSGFDSN 380
                G  A+++F  M    I+P   T+  +  S       H  G   H+  I++GF S+
Sbjct: 726 AVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSD 785

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             VA+SL+ MYAK G+++SST IF  +  +++VSWN I+    Q G   E L +F ++  
Sbjct: 786 EYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQH 845

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G   DR+ LA  L +C     +++GM +   +  + G+          +D+  + G++ 
Sbjct: 846 AGNKLDRVCLAECLSSCASLASLEEGMQLH-GLGMKSGLDSDSYVVNAAMDMYGKCGKMD 904

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           + + +      +P    W +++   A YG  K  E   ++M+
Sbjct: 905 EMLQVVPDQAIRPQ-QCWNTLISGYAKYGYFKEAEETFKQMV 945



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 187/380 (49%), Gaps = 12/380 (3%)

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS- 159
           L +FDE+ +    +W + +SG   CG    A EM   M+  GV  SGF  + L++     
Sbjct: 297 LHLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERR 356

Query: 160 ------ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
                 AC G  IH    R+GL + NV +G +L+ +YG  G++  A  +F  M E +++S
Sbjct: 357 GRDEGIAC-GAAIHALTHRAGL-MGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVS 414

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W +L+    ++GY E AL  +  MR  G   +    + V++ C  L N   G QV +  +
Sbjct: 415 WTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVI 474

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
             G  +   V ++ I +F    R+ D+ +LF++++  D    N MIS Y   G       
Sbjct: 475 VSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFL 534

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +F  M    +RP   TL C L S+        HGS  HS+ ++S  DS+  V ++L+ MY
Sbjct: 535 VFSDMRHHGLRPDATTL-CSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMY 593

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +  G +  +  +F  + +RDL+SWNT++    QN  + + L    +L      P+ +T +
Sbjct: 594 SAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFS 653

Query: 452 AVLLACNYGGFVDKGMLVFS 471
           + L AC+  G +  G +V +
Sbjct: 654 SALGACSSPGALIDGKMVHA 673



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 37/214 (17%)

Query: 11   NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            NK      ++ +  C S  S +    +HG   K G ++ +Y+ N  +D+Y + G  D++L
Sbjct: 848  NKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEML 907

Query: 71   QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            Q+                              V D+   P    WN++ISGYA  GY   
Sbjct: 908  QV------------------------------VPDQAIRPQQC-WNTLISGYAKYGYFKE 936

Query: 131  ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
            A E F +M   G +P   TF  LLS  S A     G   + SM  S      +     ++
Sbjct: 937  AEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIV 996

Query: 188  DMYGKLGVLYYAFGVFLNMEEL--DIISWNSLIS 219
            D+ G+LG    A      M  L  D+I W SL+S
Sbjct: 997  DLLGRLGRFAEAEKFIEEMPVLPNDLI-WRSLLS 1029



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS- 159
           L +FDE+ +    +W + +SG   CG    A EM   M+ +GV  SGF  + L++     
Sbjct: 74  LHLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERR 133

Query: 160 ------ACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
                 AC G  IH    R+GL + NV +G +L+ +
Sbjct: 134 GRDEGIAC-GAAIHALTHRAGL-MGNVYIGRALLHL 167



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGK---LGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           IHG  +R  L LS     N+L+  Y +         A  +F  M +    +W + +SGC 
Sbjct: 38  IHGLAVRLALPLS-AFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCV 96

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK----GKQVFALSVKVGFL 278
             G    A +    MR  G     + ++ ++ AC + R  D+    G  + AL+ + G +
Sbjct: 97  RCGRDGTAFEMLRGMRERGVPLSGFALASLVTACER-RGRDEGIACGAAIHALTHRAGLM 155

Query: 279 SNSIVLSATIDL 290
            N  +  A + L
Sbjct: 156 GNVYIGRALLHL 167


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 298/570 (52%), Gaps = 7/570 (1%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS--DNLDTALKVFDEIPEPDVVSWNS 117
           + + GT D + Q    +           L  +L+S   +L   L +FD +  P +  WN+
Sbjct: 15  FHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLLLFDRLATPYIFLWNT 74

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK--QIHGSMIRSGL 175
           +I G+++       L  +S+++  GV P   TF +LL   S   +    Q +  +++ GL
Sbjct: 75  IIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVKFGL 134

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
                V  NSL+  +   G +  +  +F+   + D++SW +LI+GC  +G    AL+ F 
Sbjct: 135 DFDAFV-QNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFV 193

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATIDLFSKC 294
            MR SG   DE TI  V+ A   LR++  G+ V    V+ G  + +  V SA +D++SKC
Sbjct: 194 EMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKC 253

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
              +D+V++F ++   +      +I+ Y +    + AL++FQ M+ E I P + T++  L
Sbjct: 254 GYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSAL 313

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           ++   +  ++ G   H    +S    N+ + ++L++MY+K G +D +  +F KL  +D+ 
Sbjct: 314 TACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            W  ++ GL   G A  +L++F +++   + P+ +T   VL AC +GG VD+G+ +F  M
Sbjct: 374 PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLM 433

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
             +Y + P  +HY C++DLL +AG+L +AI    +MP +P   +W ++     I+   +L
Sbjct: 434 ICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFEL 493

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E++   ++ LQ      Y LL   Y+   +WEA   V+++M+  G++K  GCSWI +  
Sbjct: 494 GEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNG 553

Query: 594 RIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            I+ F A +  H     +Y++L  ++ +++
Sbjct: 554 VIHEFIAFDKSHTESINVYMMLESVSAQLK 583



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 37/280 (13%)

Query: 33  FAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           F + +HG   + G      Y+G+  +D+YS+ G  DD +++F+E+P +N +SW   + G 
Sbjct: 222 FGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGY 281

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           ++ +    ALKVF E                               M ++G+ P+  T +
Sbjct: 282 VQCNRYKEALKVFQE-------------------------------MIIEGIEPNQSTVT 310

Query: 152 ILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L+  +   S   G+ +H  + RS L L N  LG +L+DMY K G +  A  VF  +  
Sbjct: 311 SALTACAQLGSLDQGRWLHEYVDRSKLGL-NSKLGTALVDMYSKCGCVDEALLVFEKLPA 369

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+  W ++I+G    G    +L+ F  M  S   P+  T   V++AC     +D+G ++
Sbjct: 370 KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLEL 429

Query: 269 FALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           F L +       N       +DL  +  RLE++++  E +
Sbjct: 430 FRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM 469



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 61/274 (22%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           S  +  +  C    S D  + +H ++ +     ++ LG   +D+YS+ G  D+ L +F++
Sbjct: 307 STVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEK 366

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +P K+   W                                +MI+G A  G +  +L +F
Sbjct: 367 LPAKDVYPW-------------------------------TAMINGLAMRGDALSSLNLF 395

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL-----------SNVVLGN 184
           S+M    V+P+G TF  +L    SAC     HG ++  GL L            NV    
Sbjct: 396 SQMIRSRVQPNGVTFLGVL----SAC----AHGGLVDEGLELFRLMICDYRLEPNVDHYG 447

Query: 185 SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA---------LDQF 234
            ++D+ G+ G L  A     +M  E     W +L SGC      EL          L   
Sbjct: 448 CMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPH 507

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           +S RY   + + Y+      A   +R L KGK V
Sbjct: 508 HSGRYILLA-NLYSRCQKWEAAANVRRLMKGKGV 540


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 178/618 (28%), Positives = 304/618 (49%), Gaps = 45/618 (7%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           + SY S + D  L  +  D A+T+     K+ F    YL    +  Y+R    D  LQLF
Sbjct: 11  TFSYQSMITDH-LRNQRIDEARTVFD---KVSF-PDVYLYTMMITGYARNYRFDHALQLF 65

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            E+P K+ +SWN  ++G     +L  A K+FDE+PE  VVSW +MI+G+   G  + A  
Sbjct: 66  YEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEG 125

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +F KM  +                                     ++   NS+I  Y   
Sbjct: 126 LFYKMPFR-------------------------------------DIAAWNSMIYGYCCN 148

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY--SPDEYTISI 251
           G +     +F  M   ++ISW S+I G    G  E AL  F  M   G    P   T   
Sbjct: 149 GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCC 208

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           VI AC     L +G Q+ A   K+G+  ++ + +A I  ++ C ++EDS+R+F      +
Sbjct: 209 VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMN 268

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS 370
             +   +++ YG     E AL++F  M+RE + P + + +  L+S   +  ++ G + H+
Sbjct: 269 VVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHT 328

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            A+K G +++  V +SL+ MY + G+++    IF ++ K+++VSWN++++G  Q+G    
Sbjct: 329 AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMW 388

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L  F +++   + PD IT   +L AC++ G   KG  +F    E        +HYAC++
Sbjct: 389 ALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMV 448

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           D+L ++G+L +A ++   MP +    +W  +L A  ++  +++ E  A+ ++DL+     
Sbjct: 449 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 508

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  YA   RW  + R+++ M++ GI K  G SWI IK     F +G+  H    +
Sbjct: 509 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 568

Query: 611 IYLVLRLLTWEMEDEGCV 628
           IY  L  L  ++++ G V
Sbjct: 569 IYQKLEWLGGKLKELGYV 586



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 55/311 (17%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V   S +YC  +I  C +  +      IH H+FKLG++   Y+    +  Y+     +D 
Sbjct: 199 VKPTSSTYCC-VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDS 257

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA-SCGYS 128
           L++F      N + W                                ++++GY  +C + 
Sbjct: 258 LRVFHGKLHMNVVIW-------------------------------TALVTGYGLNCKHE 286

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVL 182
           D AL++F +M  +GV P+  +F+   S ++S C       G++IH + ++ GL  ++V +
Sbjct: 287 D-ALKVFGEMMREGVLPNQSSFT---SALNSCCGLEALDWGREIHTAAVKLGLE-TDVFV 341

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           GNSLI MY + G L     +F  + + +I+SWNS+I GC   G G  AL  F  M  S  
Sbjct: 342 GNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMV 401

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV------LSATIDLFSKCNR 296
            PDE T + +++AC+      KG+ +F       F  N          +  +D+  +  +
Sbjct: 402 EPDEITFTGLLSACSHSGMSQKGRCLFKY-----FSENKSAEVKLDHYACMVDILGRSGK 456

Query: 297 LEDSVRLFEQL 307
           LE++  L   +
Sbjct: 457 LEEAEELIRNM 467


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 323/629 (51%), Gaps = 52/629 (8%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+   +   S    +  H  +    F+ + +L  R +  Y+ FG S     +FD +  K
Sbjct: 31  HLLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTK 90

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFS 136
           N   WN  + G +K+   D A+ +F ++     PD                 DY L   S
Sbjct: 91  NVYLWNSLINGYVKNHQFDNAIVLFRQMGRCLLPD-----------------DYTLATIS 133

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
           K+       SG    ++L        GK IHG  +R G  +S++V+GNS++ MY +    
Sbjct: 134 KV-------SGEIQDLVL--------GKLIHGKSLRIGF-VSDIVVGNSVMSMYIRCREF 177

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL-----DQFYSMRYSGYSPDEYTI-S 250
             A  VF  M + ++ S+N +ISGC   G  + +L     + F  M+  GY+ D +T+ S
Sbjct: 178 GDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVAS 237

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGF----LSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           ++   C      D G+++    VK G      S+  + S+ ID++S+ N+L  S R+F+Q
Sbjct: 238 LLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQ 297

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEH 364
           +   +  V   MI+ Y + G  E AL LF+ M R+D IRP   +L  VL +   +  +  
Sbjct: 298 MKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMG 357

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLT 423
           G Q H+ +IK  F+    + ++L++MYAK GS+D +  +F      +D ++W++I+    
Sbjct: 358 GKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYG 417

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
            +G+  E L  + E+L++G+ PD IT+  VL AC   G VD+G+ +++++  EY + P  
Sbjct: 418 LHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSV 477

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER-MM 542
           E   C++DLL ++GQL +A+D    MP  PG S+W S+L AS I+G+  +T ++A R ++
Sbjct: 478 EICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASVIHGN-SMTRDLAYRCLL 536

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           +L+  +P  Y  L+  YA   RW+ I  V+ +M++ G+ KV G SWI I ++ + F   +
Sbjct: 537 ELEPENPSNYISLSNTYASSRRWDEITEVRSMMKERGLRKVPGISWITISDKNHFFTVAD 596

Query: 603 LQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
             H     IY +L  L   M D GC  ++
Sbjct: 597 KVHPSSSSIYEMLDDLVSIMTD-GCADID 624


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 281/538 (52%), Gaps = 5/538 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A K+FD +   ++VSW +MI+GY        A+ MF ++  +G +P  F  + 
Sbjct: 262 KCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACAS 321

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L++  S      G+Q+H   I++ L  S+  + NSLIDMY K   L  A  VF  + E 
Sbjct: 322 ILNSCGSLAAIWQGRQVHAHAIKANLE-SDEYVKNSLIDMYAKCEHLTEARAVFEALAED 380

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D IS+N++I G    G    A+D F  MRY    P   T   ++   +    ++  KQ+ 
Sbjct: 381 DAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIH 440

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L VK G   +    S+ ID++SK + +ED+  +F  +   D  + N MI    +   GE
Sbjct: 441 GLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGE 500

Query: 330 VALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A++LF  +    + P EFT ++ V  +  +  + HG QFH+  IK+G DS+  V+++L+
Sbjct: 501 EAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALI 560

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK G I     +F     +D++ WN+++    Q+G+A E L VF  +   G+ P+ +
Sbjct: 561 DMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYV 620

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC + G VD+G+  F  MK +Y + PG EHYA +++L  ++G+L  A +    
Sbjct: 621 TFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIER 680

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP +P  ++W S+L A  ++G+V++     E  +        P  L++  YA RG W   
Sbjct: 681 MPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDA 740

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            ++++ M   G+ K  G SWI +   ++TF A   +H     IY +L  LT  +++ G
Sbjct: 741 QKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSLLDELTSILKNGG 798



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 218/438 (49%), Gaps = 44/438 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   ++  F + +HG   ++G + + Y+G   ++LY++ G                CI  
Sbjct: 124 CAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVG----------------CI-- 165

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                        D A+ VFD +P  + V+W ++I+GY+  G    ALE+F KM L GVR
Sbjct: 166 -------------DAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 145 PSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           P  F    +L++  SAC        G+Q HG   R  +     V+ N+LID+Y K   L 
Sbjct: 213 PDRF----VLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVI-NALIDLYCKCSRLS 267

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  ME  +++SW ++I+G   +     A+  F+ +   G+ PD +  + ++N+C 
Sbjct: 268 LARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCG 327

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  + +G+QV A ++K    S+  V ++ ID+++KC  L ++  +FE L   D    N 
Sbjct: 328 SLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNA 387

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSG 376
           MI  Y R G    A+++F  M    ++P+  T   +L  S     +E   Q H + +KSG
Sbjct: 388 MIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSG 447

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
              +    SSL+++Y+K   ++ +  +F  +  RD+V WN ++ GL QN +  E + +F 
Sbjct: 448 TSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFN 507

Query: 437 ELLEEGLPPDRITLAAVL 454
           +L   GL P+  T  A++
Sbjct: 508 QLQVSGLAPNEFTFVALV 525



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 204/380 (53%), Gaps = 15/380 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--G 142
           N+ LR   K   +  A ++FD +P  ++VSW S IS +A  G  + A+ +F+  Q    G
Sbjct: 50  NLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGG 109

Query: 143 VRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             P+ F    LL++   AC        G+Q+HG  +R GL   NV +G +LI++Y K+G 
Sbjct: 110 EAPNEF----LLASALRACAQSRAVSFGQQVHGVAVRIGLD-GNVYVGTALINLYAKVGC 164

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  +   + ++W ++I+G    G G +AL+ F  M   G  PD + ++  ++A
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ L  L+ G+Q    + ++   +++ V++A IDL+ KC+RL  + +LF+ ++  +    
Sbjct: 225 CSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSW 284

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIK 374
             MI+ Y +      A+ +F  + +E  +P  F  + +L+S   +  +  G Q H+ AIK
Sbjct: 285 TTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIK 344

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +  +S+  V +SL++MYAK   +  +  +F  L + D +S+N ++ G ++ G  A  +DV
Sbjct: 345 ANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDV 404

Query: 435 FEELLEEGLPPDRITLAAVL 454
           F ++    L P  +T  ++L
Sbjct: 405 FSKMRYCSLKPSPLTFVSLL 424



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 207/436 (47%), Gaps = 43/436 (9%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+ +++ C S  +    + +H H  K    +  Y+ N  +D+Y++     +   +F+ + 
Sbjct: 319 CASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALA 378

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           + + IS+N                               +MI GY+  G    A+++FSK
Sbjct: 379 EDDAISYN-------------------------------AMIEGYSRLGDLAGAIDVFSK 407

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M+   ++PS  TF  LL   SS       KQIHG +++SG SL ++  G+SLID+Y K  
Sbjct: 408 MRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSL-DLYAGSSLIDVYSKFS 466

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           ++  A  VF  M   D++ WN++I G   +  GE A+  F  ++ SG +P+E+T   ++ 
Sbjct: 467 LVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVT 526

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
             + L ++  G+Q  A  +K G  S+  V +A ID+++KC  +++   LFE     D   
Sbjct: 527 VASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVIC 586

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMA 372
            N MISTY ++G  E AL +F++M    + P   T   VLS+      V+ G   F  M 
Sbjct: 587 WNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMK 646

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI-----MMGLTQNG 426
            K   +      +S++ ++ ++G + ++ E   ++      + W ++     + G  + G
Sbjct: 647 TKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIG 706

Query: 427 RAAETLDVFEELLEEG 442
           R A  + +  +  + G
Sbjct: 707 RYATEMALLADPADSG 722



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 215/421 (51%), Gaps = 11/421 (2%)

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           H   + +G +L ++ L N L+  Y KLG +  A  +F  M   +++SW S IS     G 
Sbjct: 34  HARAVVTG-ALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGC 92

Query: 227 GELALDQFYSMRYS--GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
            E A+  F + + +  G +P+E+ ++  + AC + R +  G+QV  ++V++G   N  V 
Sbjct: 93  EEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVG 152

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A I+L++K   ++ ++ +F+ L   +      +I+ Y + G G VALELF  M  + +R
Sbjct: 153 TALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 345 PTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P  F L+  +S+   +  +E G Q H  A +   +++A V ++L+++Y K   +  + ++
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKL 272

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  ++ R+LVSW T++ G  QN   AE + +F +L +EG  PD    A++L +C     +
Sbjct: 273 FDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAI 332

Query: 464 DKGMLVFS-AMKEEYGVMPGEEHYA-CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +G  V + A+K     +  +E+    +ID+  +   L +A  +   +      S + ++
Sbjct: 333 WQGRQVHAHAIKAN---LESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAIS-YNAM 388

Query: 522 LRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +   +  GD+    +V  +M    L PSPL +  L    + +   E   ++  ++ K+G 
Sbjct: 389 IEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGT 448

Query: 581 N 581
           +
Sbjct: 449 S 449


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 164/533 (30%), Positives = 285/533 (53%), Gaps = 9/533 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   L  A +VFDE+ E ++VSW++MISGY   G    AL +FSK+    + P+ + ++ 
Sbjct: 50  KCRKLREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKLN---IVPNEYVYAS 106

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++S  +S      GKQIHG  ++ GL   + V  N+LI MY K G    A   +    EL
Sbjct: 107 VISACASLKGLVQGKQIHGQALKFGLDSVSFV-SNALITMYMKCGKCSDALLAYNEALEL 165

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           + +++N+LI+G   +   +   +    M   G+ PD +T   ++  C    +L +G+ + 
Sbjct: 166 NPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLH 225

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             ++K+   S + + +  I ++SK N LE++ + F  ++  D    N  IS+       E
Sbjct: 226 CQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHE 285

Query: 330 VALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            ALE F+ ML E  +RP EFT +  L++   +  + +G Q H   I++    +    ++L
Sbjct: 286 KALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNAL 345

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           + MYAK G I  +  IF K++ ++LVSWNT++ G   +G   +  ++F ++   G+ PD 
Sbjct: 346 INMYAKCGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDS 405

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   +L A N+ G VD+G++ F++M+E YG+ P  EH++C+IDLL +AG+L +A +   
Sbjct: 406 VTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMK 465

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
             PF     +  S+L A  ++GDV   +  A +++ LQ  +  PY LL+  YA    W+ 
Sbjct: 466 KFPFGHDTVVLGSLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDG 525

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           +    K+++ +G+ K  G S I +      F   +  H   ++I  +L++L W
Sbjct: 526 VAEAWKLLKGSGLKKEPGHSLIEVNGTFEKFTVVDFSHSRIEEIMDMLKILRW 578



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 177/395 (44%), Gaps = 38/395 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C S K     K IHG   K G ++ +++ N  + +Y + G   D L  ++E  +
Sbjct: 105 ASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALE 164

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +++                               N++I+G+      D   E+   M
Sbjct: 165 LNPVAY-------------------------------NALITGFVENQQPDKGFEVLRMM 193

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G  P  FTF  LL T +S      G+ +H   I+  L+ S   +GN +I MY KL +
Sbjct: 194 YQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLN-STAFIGNLIITMYSKLNL 252

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           L  A   F ++EE D+ISWN+ IS C +    E AL+ F  M       PDE+T +  + 
Sbjct: 253 LEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALA 312

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+ L ++  GKQ+    ++     +    +A I++++KC  +  +  +F +++  +   
Sbjct: 313 ACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVS 372

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHG-SQFHSMA 372
            N MI+ +G +GFG  A ELF  M    ++P   T   +L+ S     V+ G   F+SM 
Sbjct: 373 WNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSME 432

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
              G        S L+++  + G ++ + E   K 
Sbjct: 433 ETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKF 467



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           +I+ C+K + L +G  + A+++K    S+ IV +  ++L++KC +L ++ ++F+++   +
Sbjct: 9   LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERN 68

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHS 370
               + MIS Y + G    AL LF  +   +I P E+  + V+S+   +  +  G Q H 
Sbjct: 69  LVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGKQIHG 125

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            A+K G DS + V+++L+ MY K G    +   + +  + + V++N ++ G  +N +  +
Sbjct: 126 QALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDK 185

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
             +V   + ++G  PDR T   +L  CN    + +G L+
Sbjct: 186 GFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELL 224


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 171/586 (29%), Positives = 295/586 (50%), Gaps = 41/586 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +     K +HG   KL  +    L N  +D+YS+ G                CI+ 
Sbjct: 52  CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCG----------------CIT- 94

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                          A  +F      +VVSWN+M+ G+++ G +    ++  +M   G  
Sbjct: 95  --------------NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 140

Query: 145 PSGFTFSILLSTVSSACHG------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
                 +IL + V    H       K++H   ++    + N ++ N+ +  Y K G L Y
Sbjct: 141 VKADEVTIL-NAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAKCGSLSY 198

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  +    + SWN+LI G   S    L+LD    M+ SG  PD +T+  +++AC+K
Sbjct: 199 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK 258

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L++L  GK+V    ++     +  V  + + L+  C  L     LF+ ++       N +
Sbjct: 259 LKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTV 318

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGF 377
           I+ Y + GF + AL +F+ M+   I+    ++  V  +  + P +  G + H+ A+K   
Sbjct: 319 ITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLL 378

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           + +A +A SL++MYAK GSI  S+++F  L ++   SWN ++MG   +G A E + +FEE
Sbjct: 379 EDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEE 438

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           +   G  PD +T   VL ACN+ G + +G+     MK  +G+ P  +HYAC+ID+L +AG
Sbjct: 439 MQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAG 498

Query: 498 QLGKAIDITS-TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           QL KA+ + +  M  +    IW+S+L +  I+ ++++ E VA ++ +L+   P  Y LL+
Sbjct: 499 QLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLS 558

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
             YA  G+WE + +V++ M +  + K  GCSWI +  ++++F  GE
Sbjct: 559 NLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGE 604



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 199/443 (44%), Gaps = 17/443 (3%)

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-------G 163
           + VSWNSMI  ++  G+S+ +  +  +M  +    +       L TV   C        G
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K +HG  ++  L    +VL N+L+DMY K G +  A  +F      +++SWN+++ G   
Sbjct: 62  KGVHGWAVKLRLD-KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 224 SGYGELALDQFYSMRYSG--YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            G      D    M   G     DE TI   +  C     L   K++   S+K  F+ N 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
           +V +A +  ++KC  L  + R+F  +        N +I  + +     ++L+    M   
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 342 DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            + P  FT+  +LS+   +  +  G + H   I++  + +  V  S++ +Y   G + + 
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 300

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             +F  ++ + LVSWNT++ G  QNG     L VF +++  G+    I++  V  AC+  
Sbjct: 301 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLL 360

Query: 461 GFVDKGMLVFS-AMKEEYGVMPGEEHYAC-IIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
             +  G    + A+K    ++  +   AC +ID+  + G + ++  + + +  +   S W
Sbjct: 361 PSLRLGREAHAYALKH---LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-W 416

Query: 519 ESILRASAIYGDVKLTENVAERM 541
            +++    I+G  K    + E M
Sbjct: 417 NAMIMGYGIHGLAKEAIKLFEEM 439



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 58/353 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S + CS L+  C   KS    K +HG + +       ++    L LY   G    V  LF
Sbjct: 246 SFTVCS-LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 304

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           D +  K+ +SWN  + G L++                               G+ D AL 
Sbjct: 305 DAMEDKSLVSWNTVITGYLQN-------------------------------GFPDRALG 333

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F +M L G++  G +   +    S   S   G++ H   ++  L   +  +  SLIDMY
Sbjct: 334 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLE-DDAFIACSLIDMY 392

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  +  VF  ++E    SWN++I G    G  + A+  F  M+ +G++PD+ T  
Sbjct: 393 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 452

Query: 251 IVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            V+ AC         LR LD+ K  F L        N    +  ID+  +  +L+ ++R+
Sbjct: 453 GVLTACNHSGLIHEGLRYLDQMKSSFGLK------PNLKHYACVIDMLGRAGQLDKALRV 506

Query: 304 F--EQLDRWDYAVINVMIST---YGRYGFGE-VALELFQLMLREDIRPTEFTL 350
              E  +  D  +   ++S+   +     GE VA +LF+L   E  +P  + L
Sbjct: 507 VAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL---EPEKPENYVL 556


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/541 (30%), Positives = 294/541 (54%), Gaps = 6/541 (1%)

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L+K   L  A KVFD +PE DVV WNS+I GY   G    +++MF +M   G+RPS  T 
Sbjct: 190 LVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTM 249

Query: 151 SILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + LL     +     G   H  ++  G+  ++V +  SL+DMY  LG    A  VF +M 
Sbjct: 250 ANLLKACGQSGLKKVGMCAHSYVLALGMG-NDVFVLTSLVDMYSNLGDTGSAALVFDSMC 308

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
              +ISWN++ISG   +G    +   F  +  SG   D  T+  +I  C++  +L+ G+ 
Sbjct: 309 SRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRI 368

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           + +  ++    S+ ++ +A +D++SKC  ++ +  +F ++ + +      M+    + G+
Sbjct: 369 LHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGY 428

Query: 328 GEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            E AL+LF  M  E +     TL S V     +  +  G   H+  I+ G+  +AV+ S+
Sbjct: 429 AEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSA 488

Query: 387 LMEMYAKTGSIDSSTEIFV-KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           L++MYAK G I S+ ++F  +   +D++  N+++MG   +G     L V+  ++EE L P
Sbjct: 489 LIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKP 548

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           ++ T  ++L AC++ G V++G  +F +M+ ++ V P  +HYAC++DL  +AG+L +A ++
Sbjct: 549 NQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADEL 608

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MPFQP   + E++L     + +  +   +A+R++ L   +   Y +L+  YA   +W
Sbjct: 609 VKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKW 668

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           E++  ++ +MR  G+ K+ G S I + N++YTF A +  H     IY +L  L  E+E E
Sbjct: 669 ESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAE 728

Query: 626 G 626
           G
Sbjct: 729 G 729



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 225/468 (48%), Gaps = 12/468 (2%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A  VFD+   P+    N+MI+G+           +F  M    +  + +T    L  
Sbjct: 95  LGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKA 154

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +       G +I  + +R G  L ++ +G+S+++   K G L  A  VF  M E D++ 
Sbjct: 155 CTDLLDDEVGMEIIRAAVRRGFHL-HLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVC 213

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--LRNLDKGKQVFAL 271
           WNS+I G    G    ++  F  M   G  P   T++ ++ AC +  L+ +      + L
Sbjct: 214 WNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVL 273

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           ++ +G  ++  VL++ +D++S       +  +F+ +        N MIS Y + G    +
Sbjct: 274 ALGMG--NDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPES 331

Query: 332 LELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
             LF+ +++        TL S +        +E+G   HS  I+   +S+ V+++++++M
Sbjct: 332 YALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDM 391

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+K G+I  +T +F ++ K+++++W  +++GL+QNG A + L +F ++ EE +  + +TL
Sbjct: 392 YSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTL 451

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            +++  C + G + KG  V +     +G        + +ID+  + G++  A  + +   
Sbjct: 452 VSLVHCCAHLGSLTKGRTVHAHFI-RHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEF 510

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPY-SLLT 556
                 +  S++    ++G  +    V  RM++ +L P+   + SLLT
Sbjct: 511 HLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLT 558



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 31/289 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C      +  + +H  + +    +H  L    +D+YS+ G       +F  + +KN
Sbjct: 353 LIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKN 412

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I+W   L GL ++   + ALK+F ++ E  V + +  +     C               
Sbjct: 413 VITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHC--------------- 457

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
                         + + S   G+ +H   IR G +  + V+ ++LIDMY K G ++ A 
Sbjct: 458 -------------CAHLGSLTKGRTVHAHFIRHGYAF-DAVITSALIDMYAKCGKIHSAE 503

Query: 201 GVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
            +F N   L D+I  NS+I G    G+G  AL  +  M      P++ T   ++ AC+  
Sbjct: 504 KLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHS 563

Query: 260 RNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             +++GK +F ++             +  +DL S+  RLE++  L +Q+
Sbjct: 564 GLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQM 612



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           K + A  +K    + S + +  I ++S    L  +  +F+Q    + AV N MI+ + R 
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
                   LF++M   DI    +T    L +   +   E G +    A++ GF  +  V 
Sbjct: 124 QQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVG 183

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           SS++    K G +  + ++F  + ++D+V WN+I+ G  Q G   E++ +F E++  GL 
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR 243

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS 471
           P  +T+A +L AC   G    GM   S
Sbjct: 244 PSPVTMANLLKACGQSGLKKVGMCAHS 270


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 303/583 (51%), Gaps = 24/583 (4%)

Query: 49  HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS-----DNLDTALKV 103
           H  L  R + L     TS  V Q+  +I   N   +N  +   L +       +  A ++
Sbjct: 34  HRLLEERFISLLQSCKTSKQVHQIQAQI-IANGFQYNEYITPKLVTICATLKRMTYARQL 92

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSA 160
           FD+IP+P++  WNSM  GYA        + +F +M+   +RP+ FTF ++L +   +++ 
Sbjct: 93  FDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINAL 152

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             G+Q+H  +I+ G    N  +G +LIDMY   G +  A+ +F  M E ++++W S+I+G
Sbjct: 153 IEGEQVHCFLIKCGFR-GNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMING 211

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTI--SIVINACTKLRNLDKGKQVFALSVKVGFL 278
                   L+ D   + R    +P+   +  +I+++   +  ++ + +++F        +
Sbjct: 212 YI------LSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVM 265

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
             + VL      ++    +E    LFE++   +    N +I  Y   G     L  F+ M
Sbjct: 266 FWNTVLKG----YATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRM 321

Query: 339 LRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           L E D+ P + TL  VLS+   +  ++ G   H  A  SG   N  V ++LM+MYAK G 
Sbjct: 322 LSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGI 381

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           I+++  +F  +D +DL+SWNT++ GL  + R A+ L++F ++   G  PD IT   +L A
Sbjct: 382 IENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCA 441

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C + G V+ G   F +M ++Y +MP  EHY C++D+L +AG+L +A+     MP +    
Sbjct: 442 CTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGV 501

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           IW  +L A  IY +V+L E   +R+++L+  +P  Y +L+  Y   GRWE + R+K  MR
Sbjct: 502 IWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMR 561

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
             G  K+ GCS I + + +  F + + +H   ++IY VLR L 
Sbjct: 562 DTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLV 604



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 154/354 (43%), Gaps = 68/354 (19%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    +    + +H  L K GF  + ++G   +D+YS  GT  D  ++F E+ ++N
Sbjct: 142 VLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERN 201

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ- 139
            ++W   + G + S +L +A ++FD  PE DVV WN M+SGY   G    A ++F +M  
Sbjct: 202 VVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPN 261

Query: 140 ----------------------------------------LQGVRPSGFTFSIL------ 153
                                                   + G   +G  F +L      
Sbjct: 262 RDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRM 321

Query: 154 ------------LSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
                       L TV SAC        GK +H     SGL   NV +GN+L+DMY K G
Sbjct: 322 LSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLK-GNVYVGNALMDMYAKCG 380

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           ++  A  VF  M+  D+ISWN+LI G      G  AL+ F+ M+ +G  PD  T   ++ 
Sbjct: 381 IIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILC 440

Query: 255 ACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           ACT +  ++ G   F +++     +         +D+ ++  RLE ++    ++
Sbjct: 441 ACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM 494


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/579 (29%), Positives = 302/579 (52%), Gaps = 47/579 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C      ++ + +HG      F +H ++ N  L +Y   G                
Sbjct: 128 VIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCG---------------- 171

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           ++ A KVFD + E  VVSWN+MI+GY   G+++ AL +F++M  
Sbjct: 172 ---------------EVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVD 216

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            GV   G +    + +V  AC        G+++HG +      L   ++ N+L+DMY K 
Sbjct: 217 SGVEIDGAS----VVSVLPACGYLKELEVGRRVHGLVEEK--VLGKKIVSNALVDMYAKC 270

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  VF NM E D++SW S+I+G   +G  + AL  F  M+  G  P+  TI++++
Sbjct: 271 GSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALIL 330

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  L NL  G+ +    +K    S   V ++ ID+++KCN L  S  +F +  R    
Sbjct: 331 LACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTV 390

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMA 372
             N ++S          A+ LF+ ML E +     T + +L +  I   ++  +  +S  
Sbjct: 391 PWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYL 450

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIMMGLTQNGRAAE 430
           ++SGF SN  VA+SL+++Y+K GS++S+ +IF  + +D +D+  W+ I+ G   +G    
Sbjct: 451 MRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGET 510

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            + +F+++++ G+ P+ +T  +VL +C++ G VD G+ +F  M +++  +P ++HY C++
Sbjct: 511 AVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMV 570

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG++ +A D+  TMPF PG ++W ++L A  ++ +V+L E  A  + +L+  +  
Sbjct: 571 DLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTG 630

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            Y LL + YA  GRWE    V++ M   G+ K    S I
Sbjct: 631 NYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLI 669



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 245/492 (49%), Gaps = 16/492 (3%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR---PSGFTFSIL 153
           +  A K+FDE+ +   + +N MI  Y + G  DY   M   +++ G +   P  +T+  +
Sbjct: 71  VHNARKLFDELRQRGTLLYNFMIKMYIAKG--DYFEAMKVFLEMLGSKDCCPDNYTYPFV 128

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           +   S      +G+ +HG  + S    S++ + NSL+ MY   G +  A  VF  M+E  
Sbjct: 129 IKACSELLLVEYGRVLHGLTLVSKFG-SHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKS 187

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++SWN++I+G F +G+   AL  F  M  SG   D  ++  V+ AC  L+ L+ G++V  
Sbjct: 188 VVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHG 247

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L V+   L   IV +A +D+++KC  ++++  +F+ +   D      MI+ Y   G  + 
Sbjct: 248 L-VEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKS 306

Query: 331 ALELFQLMLREDIRPTEFTLSCV-LSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           AL LF++M  E +RP   T++ + L+   +  ++ G   H   +K    S   V +SL++
Sbjct: 307 ALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLID 366

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK   +  S  +F +  ++  V WN ++ G   N  A E + +F+++L EG+  +  T
Sbjct: 367 MYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAAT 426

Query: 450 LAAVLLACNYGGFVD-KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
             ++L A  YG   D + +   ++     G +   +    +ID+  + G L  A  I +T
Sbjct: 427 CNSLLPA--YGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNT 484

Query: 509 MPFQ-PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWE 566
           +P       +W  I+    ++G  +   ++ ++M+   + P+ + ++ + Q+ +  G  +
Sbjct: 485 IPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVD 544

Query: 567 AIVRVKKVMRKN 578
             + + K M K+
Sbjct: 545 DGLYLFKFMLKD 556



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 142/277 (51%), Gaps = 10/277 (3%)

Query: 260 RNLDKGKQVFALSVKVGFLSNSI--VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           ++L   KQ+ A  +  G LS  I  VL AT   ++ C  + ++ +LF++L +    + N 
Sbjct: 35  QSLTSTKQLHAHLITSGLLSIDIRSVLVAT---YAHCGYVHNARKLFDELRQRGTLLYNF 91

Query: 318 MISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
           MI  Y   G    A+++F  ML  +D  P  +T   V+ +   +  VE+G   H + + S
Sbjct: 92  MIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVS 151

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
            F S+  V +SL+ MY   G ++ + ++F  + ++ +VSWNT++ G  +NG A   L VF
Sbjct: 152 KFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVF 211

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            ++++ G+  D  ++ +VL AC Y   ++ G  V   ++E+  V+  +     ++D+  +
Sbjct: 212 NQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEK--VLGKKIVSNALVDMYAK 269

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
            G + +A  +   M  +   S W S++    + GD K
Sbjct: 270 CGSMDEARLVFDNMVERDVVS-WTSMINGYILNGDAK 305


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 180/614 (29%), Positives = 316/614 (51%), Gaps = 49/614 (7%)

Query: 27  SFKSFDFAKTIHGHLFKLG--FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           S   F  A  +HG L KLG  +    Y+ +  + +Y+  G                    
Sbjct: 222 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC------------------- 262

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L+ A KVFD   E +   WN+MIS +    +S   +++F   Q     
Sbjct: 263 ------------LEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLF--FQAVESE 308

Query: 145 PSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            +      LLS +S+A H       +Q+H  +I++ ++++ V + N+LI MY +   +  
Sbjct: 309 DAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN-VAVTQVCVMNALIAMYSRCNSIDT 367

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +F +F NM E D++SWN++IS    +G  + AL  FY M+      D  T++ +++A + 
Sbjct: 368 SFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASD 427

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL--DRWDYAVIN 316
           LRN D GKQ     ++ G     +  S  ID+++K   +E +  +FE+      D A  N
Sbjct: 428 LRNPDIGKQTHGYLLRNGIQFEGMD-SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWN 486

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKS 375
            M+S Y + G  + A  + + ML + + P   TL+ +L +  P   ++ G Q H  +I++
Sbjct: 487 SMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRN 546

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             D N  VA++L++MY+K+GSI  +  +F K +++ +V+++T+++G  Q+G     L +F
Sbjct: 547 DLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMF 606

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
             + + G+ PD +TL AVL AC+Y G VD+G+ +F +M+  Y + P  EH+ C+ D+L +
Sbjct: 607 HRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGR 666

Query: 496 AGQLGKAIDITSTMPFQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--Y 552
           AG++ KA +    +  +     IW S+L A  I+   +L + VA+++++++  +     +
Sbjct: 667 AGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYH 726

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL+  YA    WE +  V+K MR+ G+ K TG SWI I   +  F + + +H    +IY
Sbjct: 727 VLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQIY 786

Query: 613 LVLRLLTWEMEDEG 626
            +L  L  EM+  G
Sbjct: 787 SMLEELLMEMKHAG 800



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 230/457 (50%), Gaps = 29/457 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   ++    K +H H  +   N    + N  L++YS   ++          P 
Sbjct: 100 SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSST---------TPD 150

Query: 79  KNCIS-WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
              +S ++ C          D   KVFD + +  VV+WN++I+ Y        A++ FS 
Sbjct: 151 GKMVSGYSRC----------DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSM 200

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSN-VVLGNSLIDMYGKL 193
           M   G++PS  +F  +    SS    K    +HG +++ G    N + + +S I MY +L
Sbjct: 201 MMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAEL 260

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY-SMRYSGYSPDEYTISIV 252
           G L +A  VF N  E +   WN++IS    + +    +  F+ ++     + DE T+   
Sbjct: 261 GCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSA 320

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I+A + L+  +  +Q+ A  +K   ++   V++A I ++S+CN ++ S ++F+ +   D 
Sbjct: 321 ISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDV 380

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
              N MIS + + G  + AL LF  M ++D+     T++ +LS+   +   + G Q H  
Sbjct: 381 VSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGY 440

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK--LDKRDLVSWNTIMMGLTQNGRAA 429
            +++G      + S L++MYAK+G I+++  +F K    +RD  +WN++M G TQNG   
Sbjct: 441 LLRNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 499

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +   +  ++L++ + P+ +TLA++L ACN  G++D G
Sbjct: 500 QAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG 536



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 228/482 (47%), Gaps = 26/482 (5%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG--VRP 145
           L  L +   L  A ++FD +P P  V WN++I G     + D AL  +S M+     V+ 
Sbjct: 35  LSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKC 94

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY---------GKL 193
             +T+S +L   +   +   GK +H   +R  ++ S +V  NSL++MY         GK+
Sbjct: 95  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVY-NSLLNMYSMCSSTTPDGKM 153

Query: 194 GVLY----YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
              Y        VF  M +  +++WN+LI+    +     A+ QF  M   G  P   + 
Sbjct: 154 VSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSF 213

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             V  A + L +      V  + VK+G  ++++  V+S+ I ++++   LE + ++F+  
Sbjct: 214 VNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNC 273

Query: 308 DRWDYAVINVMISTYGRYGFGEVALEL-FQLMLREDIRPTEFT-LSCVLSSIPIPPVEHG 365
              +  V N MIS + +  F    ++L FQ +  ED    E T LS + ++  +   E  
Sbjct: 274 LERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELA 333

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            Q H+  IK+   +   V ++L+ MY++  SID+S +IF  + ++D+VSWNT++    QN
Sbjct: 334 EQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQN 393

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   E L +F E+ ++ L  D +T+ A+L A +     D G      +        G + 
Sbjct: 394 GLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDS 453

Query: 486 YACIIDLLCQAGQLGKAIDI-TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           Y  +ID+  ++G +  A ++   +   +   + W S++      G V     +  +M+D 
Sbjct: 454 Y--LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQ 511

Query: 545 QL 546
           ++
Sbjct: 512 KV 513


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/604 (29%), Positives = 297/604 (49%), Gaps = 40/604 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +  K IH H+ + G      L N  +D Y + G              
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCG-------------- 298

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +  A K+F+ +P  +++SW +++SGY        A+E+F+ M
Sbjct: 299 -----------------RVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSM 341

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  +  S +L++ +S      G Q+H   I++ L  ++  + NSLIDMY K   
Sbjct: 342 SKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLG-NDSYVTNSLIDMYAKCDC 400

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYG-EL--ALDQFYSMRYSGYSPDEYTISIV 252
           L  A  VF      D++ +N++I G    G   EL  AL+ F  MR+    P   T   +
Sbjct: 401 LTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSL 460

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + A   L +L   KQ+  L  K G   +    SA ID++S C  L+DS  +F+++   D 
Sbjct: 461 LRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDL 520

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSM 371
            + N M + Y +    E AL LF  +     RP EFT + ++++   +  V+ G +FH  
Sbjct: 521 VIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQ 580

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            +K G + N  + ++L++MYAK GS + + + F     RD+V WN+++     +G   + 
Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKA 640

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L + E+++ EG+ P+ IT   VL AC++ G V+ G+  F  M   +G+ P  EHY C++ 
Sbjct: 641 LQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVS 699

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG+L KA ++   MP +P   +W S+L   A  G+V+L E+ AE  +         
Sbjct: 700 LLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGS 759

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           +++L+  YA +G W    +V++ M+  G+ K  G SWIGI   ++ F + +  H    +I
Sbjct: 760 FTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQI 819

Query: 612 YLVL 615
           Y VL
Sbjct: 820 YEVL 823



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 151/563 (26%), Positives = 255/563 (45%), Gaps = 56/563 (9%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +   L K GF+   Y+G   +D Y + G  D    +FD +P+K+ ++W   + G +K   
Sbjct: 170 LQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGR 229

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              +L++F ++ E +VV                               P G+    +LST
Sbjct: 230 SYVSLQLFYQLMEDNVV-------------------------------PDGY----ILST 254

Query: 157 VSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           V SAC        GKQIH  ++R GL + +  L N LID Y K G +  A  +F  M   
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGLEM-DASLMNVLIDSYVKCGRVIAAHKLFNGMPNK 313

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +IISW +L+SG   +   + A++ F SM   G  PD Y  S ++ +C  L  L  G QV 
Sbjct: 314 NIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVH 373

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG- 328
           A ++K    ++S V ++ ID+++KC+ L D+ ++F+     D  + N MI  Y R G   
Sbjct: 374 AYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQW 433

Query: 329 --EVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL +F+ M    IRP+  T   +L +S  +  +    Q H +  K G + +    S
Sbjct: 434 ELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGS 493

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+++Y+    +  S  +F ++  +DLV WN++  G  Q     E L++F EL      P
Sbjct: 494 ALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERP 553

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ---LGKA 502
           D  T A ++ A      V  G   F     + G+         ++D+  + G      KA
Sbjct: 554 DEFTFANMVTAAGNLASVQLGQ-EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKA 612

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAM 561
            D  ++         W S++ + A +G+ K    + E+MM   + P+ + +  +  A + 
Sbjct: 613 FDSAASRD----VVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSH 668

Query: 562 RGRWEAIVRVKKVMRKNGINKVT 584
            G  E  ++  ++M + GI   T
Sbjct: 669 AGLVEDGLKQFELMLRFGIEPET 691



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 198/423 (46%), Gaps = 40/423 (9%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  +  CS ++  C S  +  F   +H +  K      +Y+ N  +D+Y+          
Sbjct: 347 KPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYA---------- 396

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS--- 128
                                K D L  A KVFD     DVV +N+MI GY+  G     
Sbjct: 397 ---------------------KCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWEL 435

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
             AL +F  M+ + +RPS  TF  LL   ++++S    KQIHG M + GL+L ++  G++
Sbjct: 436 HEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNL-DIFAGSA 494

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LID+Y     L  +  VF  M+  D++ WNS+ +G       E AL+ F  ++ S   PD
Sbjct: 495 LIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPD 554

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E+T + ++ A   L ++  G++     +K G   N  + +A +D+++KC   ED+ + F+
Sbjct: 555 EFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFD 614

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEH 364
                D    N +IS+Y  +G G+ AL++ + M+ E I P   T   VLS+      VE 
Sbjct: 615 SAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVED 674

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLT 423
           G +   + ++ G +        ++ +  + G ++ + E+  K+  K   + W +++ G  
Sbjct: 675 GLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCA 734

Query: 424 QNG 426
           + G
Sbjct: 735 KAG 737



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 217/451 (48%), Gaps = 54/451 (11%)

Query: 24  RCLSFKSFD----FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           R L  ++ D    +   +HG +   G    TYL N  ++LYSR G               
Sbjct: 49  RLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAG--------------- 93

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM- 138
                            +  A KVF+++PE ++VSW++M+S     G  + +L +F +  
Sbjct: 94  ----------------GMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFW 137

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGK---------QIHGSMIRSGLSLSNVVLGNSLIDM 189
           + +   P+ +    +LS+   AC G          Q+   +++SG    +V +G  LID 
Sbjct: 138 RTRKDSPNEY----ILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFD-RDVYVGTLLIDF 192

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G + YA  VF  + E   ++W ++ISGC   G   ++L  FY +      PD Y +
Sbjct: 193 YLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYIL 252

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S V++AC+ L  L+ GKQ+ A  ++ G   ++ +++  ID + KC R+  + +LF  +  
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
            +      ++S Y +    + A+ELF  M +  ++P  +  S +L+S   +  +  G+Q 
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG-- 426
           H+  IK+   +++ V +SL++MYAK   +  + ++F      D+V +N ++ G ++ G  
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432

Query: 427 -RAAETLDVFEELLEEGLPPDRITLAAVLLA 456
               E L++F ++    + P  +T  ++L A
Sbjct: 433 WELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 161/298 (54%), Gaps = 9/298 (3%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +HG +I  GL L +  L N LI++Y + G + YA  VF  M E +++SW++++S C + G
Sbjct: 66  VHGQIIVWGLEL-DTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124

Query: 226 YGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGK-QVFALS---VKVGFLSN 280
             E +L  F    R    SP+EY +S  I AC+ L    +G+  VF L    VK GF  +
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRD 182

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V +  ID + K   ++ +  +F+ L          MIS   + G   V+L+LF  ++ 
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 341 EDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           +++ P  + LS VLS+  I P +E G Q H+  ++ G + +A + + L++ Y K G + +
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIA 302

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           + ++F  +  ++++SW T++ G  QN    E +++F  + + GL PD    +++L +C
Sbjct: 303 AHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSC 360



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 6/239 (2%)

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPT 346
           I+L+S+   +  + ++FE++   +    + M+S    +G  E +L +F    R     P 
Sbjct: 86  INLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPN 145

Query: 347 EFTLSCVL---SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           E+ LS  +   S +         Q  S  +KSGFD +  V + L++ Y K G+ID +  +
Sbjct: 146 EYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLV 205

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F  L ++  V+W T++ G  + GR+  +L +F +L+E+ + PD   L+ VL AC+   F+
Sbjct: 206 FDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFL 265

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           + G  + + +   YG+         +ID   + G++  A  + + MP +   S W ++L
Sbjct: 266 EGGKQIHAHIL-RYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIIS-WTTLL 322


>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 616

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 170/557 (30%), Positives = 303/557 (54%), Gaps = 24/557 (4%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS-DYALEM------FSK 137
           N  LR  +K  +LD+A  +FDE+   +VVSWN++I G    GY  ++ +        F K
Sbjct: 55  NKLLRVYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKK 114

Query: 138 MQLQGVRPSGFTFS------ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           M +  V P G TF+      ++L+ V S   G+Q+H  +++ G  L +  +G++++D Y 
Sbjct: 115 MLMGLVDPDGITFNGLFRSCVVLNDVES---GRQLHSFVMKIGFDL-DCFVGSAVVDFYA 170

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G+   A   F  +   D++ WN ++  C  +     A++ F  M+  G+  D++T S 
Sbjct: 171 KCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSS 230

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           +++ C    + + GKQ+  L +K  F  + +V S+ +++++K + L D+ ++F+++   +
Sbjct: 231 LLSLCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPTRN 290

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
                 MI  YG++ +G+ A++LF+ MLR+D  P E T + +LSS           Q HS
Sbjct: 291 SVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCGFTSGASELMQVHS 350

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             IK GF++   + + L+  Y+K G I ++ + F  + + DLV+W +I+ GL   G   +
Sbjct: 351 CLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLALCGLEKD 410

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            + +F+++L  G+ PD+I    VL AC++GGFV  G+  F+ M  +Y ++P  EH  C+I
Sbjct: 411 AVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVPDSEHLTCLI 470

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL--QLPS 548
           DLL +AG L +A D+  +MP + G     + +RA   +G+++L    A+R M+   +   
Sbjct: 471 DLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRTHGNLRL----AKRAMEFASEPDE 526

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
           P+ YSL++  YA  GRW  + R++K++      K  G SW+ I    + F +G+  H   
Sbjct: 527 PVNYSLVSNMYASEGRWSDVARMRKLINDRCEQKTPGLSWVEIAGYNHLFISGDRSHPQS 586

Query: 609 QKIYLVLRLLTWEMEDE 625
             +Y +L LL   M+ +
Sbjct: 587 LDLYAMLGLLLNTMKKD 603



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 202/409 (49%), Gaps = 21/409 (5%)

Query: 148 FTFSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           F+F++L   + V+S      +H  +++ GL ++ + + N L+ +Y K   L  A  +F  
Sbjct: 18  FSFNVLKAAAPVNSIPRDTLLHSLVVKLGL-INELSVQNKLLRVYVKCRDLDSARTLFDE 76

Query: 206 MEELDIISWNSLISGCFNSGY-GELALDQ------FYSMRYSGYSPDEYTISIVINACTK 258
           M   +++SWN++I G  + GY GE  + Q      F  M      PD  T + +  +C  
Sbjct: 77  MARRNVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKKMLMGLVDPDGITFNGLFRSCVV 136

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L +++ G+Q+ +  +K+GF  +  V SA +D ++KC   ED+   F  +   D  + NVM
Sbjct: 137 LNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVLWNVM 196

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGF 377
           +           A+E+F+LM  E  +  +FT S +LS        E G Q H + IK  F
Sbjct: 197 LYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSLCKYKGSGELGKQLHCLLIKQSF 256

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           D + +VASSL+ +YAK  ++  + ++F ++  R+ VSW T+++G  Q+    E + +F  
Sbjct: 257 DLDILVASSLVNVYAKNDNLYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRR 316

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA- 496
           +L +   PD +T A++L +C +     + M V S +     +  G E +  I + L  A 
Sbjct: 317 MLRKDYCPDELTFASLLSSCGFTSGASELMQVHSCL-----IKLGFEAFLSINNGLIYAY 371

Query: 497 ---GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
              G +  A+     +  +P    W SI+   A+ G  K    + ++M+
Sbjct: 372 SKCGIIAAALQCFRLVA-EPDLVTWTSIICGLALCGLEKDAVKLFDKML 419



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 176/399 (44%), Gaps = 47/399 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L   C+     +  + +H  + K+GF+   ++G+  +D Y++ G  +D    F      +
Sbjct: 130 LFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAF------S 183

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           CI +                          D+V WN M+        S  A+E+F  MQL
Sbjct: 184 CILYR-------------------------DLVLWNVMLYCCVFNSLSREAIEVFRLMQL 218

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +G +   FTFS LLS      S   GKQ+H  +I+    L ++++ +SL+++Y K   LY
Sbjct: 219 EGFKGDDFTFSSLLSLCKYKGSGELGKQLHCLLIKQSFDL-DILVASSLVNVYAKNDNLY 277

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M   + +SW ++I G     YG+ A+  F  M    Y PDE T + ++++C 
Sbjct: 278 DARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCG 337

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
                 +  QV +  +K+GF +   + +  I  +SKC  +  +++ F  +   D      
Sbjct: 338 FTSGASELMQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTS 397

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGS-------QFHS 370
           +I      G  + A++LF  ML   IRP +     VLS+       HG         F+ 
Sbjct: 398 IICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSA-----CSHGGFVSMGLHYFNL 452

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           M  +     ++   + L+++  + GS+D + ++   + K
Sbjct: 453 MTNQYQLVPDSEHLTCLIDLLGRAGSLDQAFDLLKSMPK 491



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 127/295 (43%), Gaps = 36/295 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C    S +  K +H  L K  F+    + +  +++Y++     D  ++FDE+P 
Sbjct: 229 SSLLSLCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPT 288

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N +SW                                +MI GY    Y   A+++F +M
Sbjct: 289 RNSVSW-------------------------------TTMIVGYGQHEYGKEAVKLFRRM 317

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +   P   TF+ LLS+    S A    Q+H  +I+ G   + + + N LI  Y K G+
Sbjct: 318 LRKDYCPDELTFASLLSSCGFTSGASELMQVHSCLIKLGFE-AFLSINNGLIYAYSKCGI 376

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  + E D+++W S+I G    G  + A+  F  M   G  PD+     V++A
Sbjct: 377 IAAALQCFRLVAEPDLVTWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSA 436

Query: 256 CTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           C+    +  G   F L + +   + +S  L+  IDL  +   L+ +  L + + +
Sbjct: 437 CSHGGFVSMGLHYFNLMTNQYQLVPDSEHLTCLIDLLGRAGSLDQAFDLLKSMPK 491


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 258/444 (58%), Gaps = 2/444 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            K  HG +IR  L   +V L N LI+ Y K G +  A  VF  M E  ++SWN++I    
Sbjct: 72  AKACHGKIIRIDLE-GDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 130

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     ALD F  MR  G+   E+TIS V++AC    +  + K++  LSVK     N  
Sbjct: 131 RNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLY 190

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +DL++KC  ++D+V++FE +        + M++ Y +    E AL L++   R  
Sbjct: 191 VGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 250

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   +FTLS V+ +   +  +  G Q H++  KSGF SN  VASS ++MYAK GS+  S 
Sbjct: 251 LEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESY 310

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            IF ++ +++L  WNTI+ G  ++ R  E + +FE++ ++G+ P+ +T +++L  C + G
Sbjct: 311 IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTG 370

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            V++G   F  M+  YG+ P   HY+C++D+L +AG L +A ++  ++PF P  SIW S+
Sbjct: 371 LVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSL 430

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +  +Y +++L E  AE++ +L+  +   + LL+  YA   +WE I + +K++R   + 
Sbjct: 431 LASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVK 490

Query: 582 KVTGCSWIGIKNRIYTFNAGELQH 605
           KV G SWI IK++++TF+ GE  H
Sbjct: 491 KVRGKSWIDIKDKVHTFSVGESGH 514



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 173/324 (53%), Gaps = 6/324 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ +    K   ++ A +VFD + E  +VSWN+MI  Y        AL++F +M+ +G +
Sbjct: 92  NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 151

Query: 145 PSGFTFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            S FT S +LS     C     K++H   +++ + L N+ +G +L+D+Y K G++  A  
Sbjct: 152 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDL-NLYVGTALLDLYAKCGMIKDAVQ 210

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M++   ++W+S+++G   +   E AL  +   +      +++T+S VI AC+ L  
Sbjct: 211 VFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 270

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L +GKQ+ A+  K GF SN  V S+ +D+++KC  L +S  +F ++   +  + N +IS 
Sbjct: 271 LIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISG 330

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS-MAIKSGFDS 379
           + ++   +  + LF+ M ++ + P E T S +LS       VE G +F   M    G   
Sbjct: 331 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 390

Query: 380 NAVVASSLMEMYAKTGSIDSSTEI 403
           N V  S ++++  + G +  + E+
Sbjct: 391 NVVHYSCMVDILGRAGLLSEAYEL 414



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 41/312 (13%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H    K   + + Y+G   LDLY++ G   D +Q+F+ +  K+ ++W          
Sbjct: 174 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTW---------- 223

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                +SM++GY      + AL ++ + Q   +  + FT S ++
Sbjct: 224 ---------------------SSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVI 262

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S +++   GKQ+H  + +SG   SNV + +S +DMY K G L  ++ +F  ++E ++
Sbjct: 263 CACSNLAALIEGKQMHAVICKSGFG-SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNL 321

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
             WN++ISG       +  +  F  M+  G  P+E T S +++ C     +++G++ F L
Sbjct: 322 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 381

Query: 272 -SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI--NVMIS--TYGRYG 326
                G   N +  S  +D+  +   L ++  L + +     A I  +++ S   Y    
Sbjct: 382 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLE 441

Query: 327 FGEVALE-LFQL 337
             EVA E LF+L
Sbjct: 442 LAEVAAEKLFEL 453



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 155/342 (45%), Gaps = 6/342 (1%)

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           RYS    +   +  ++  C +   + + K      +++    +  +L+  I+ +SKC  +
Sbjct: 45  RYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFV 104

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           E + ++F+ +        N MI  Y R      AL++F  M  E  + +EFT+S VLS+ 
Sbjct: 105 ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164

Query: 358 PIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
            +        + H +++K+  D N  V ++L+++YAK G I  + ++F  +  +  V+W+
Sbjct: 165 GVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWS 224

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKE 475
           +++ G  QN    E L ++       L  ++ TL++V+ AC N    ++   +     K 
Sbjct: 225 SMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS 284

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
            +G        A  +D+  + G L ++  I S +  +    +W +I+   A +   K   
Sbjct: 285 GFGSNVFVASSA--VDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISGFAKHARPKEVM 341

Query: 536 NVAERM-MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
            + E+M  D   P+ + +S L       G  E   R  K+MR
Sbjct: 342 ILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 383



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 40/227 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C +  +    K +H  + K GF ++ ++ +  +D+Y++ G+  +   +F E+ +
Sbjct: 259 SSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 318

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN   W                               N++ISG+A        + +F KM
Sbjct: 319 KNLELW-------------------------------NTIISGFAKHARPKEVMILFEKM 347

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLG 194
           Q  G+ P+  TFS LLS          G++    ++R+   LS NVV  + ++D+ G+ G
Sbjct: 348 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAG 406

Query: 195 VLYYAFGVFLNMEELDIIS-WNSLISGCF---NSGYGELALDQFYSM 237
           +L  A+ +  ++      S W SL++ C    N    E+A ++ + +
Sbjct: 407 LLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFEL 453


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/538 (30%), Positives = 296/538 (55%), Gaps = 8/538 (1%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPS 146
           L  +   ++++ A ++FDE+ E DV+SW+ MI GY   G +  AL++F +M     +   
Sbjct: 177 LLSMYADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELD 236

Query: 147 GFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           G T   +L   ++      G+ +HG +I  GL   ++ +GNS+IDMY K      AF  F
Sbjct: 237 GITMVSVLKACANTGDISMGRSVHGVVICRGLDY-DLFVGNSIIDMYSKCDDHESAFKAF 295

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   + +SWNS+ISG   +     AL  FYSM  +G+  DE T+  ++ +C    +  
Sbjct: 296 NEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPF 355

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
           + K + ++ ++ G+  N  V+++ ID +SKC+ +E + +LF++L   D    + MI+ + 
Sbjct: 356 QCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFN 415

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAV 382
             G  + A+ LFQ M +   +P   T+  +L +  +      S++ H +AI+ G  +   
Sbjct: 416 HCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVA 475

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V +++++MYAK G I  S + F ++ ++++VSW  ++     NG A + L +  E+   G
Sbjct: 476 VGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHG 535

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           L P+ +T  +VL AC++GG V++G+  F  M +++GV PG EHY+C++D+L +AG+L  A
Sbjct: 536 LKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSA 595

Query: 503 IDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +++   MP   + G  +W ++L A    G+ +L    A R+++L+  S   Y L +  YA
Sbjct: 596 MNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYA 655

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
             G W    R++ +++  G+  V G S + ++++ + F AG+  H    +I+ V+  L
Sbjct: 656 ASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVVEQL 713



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 223/495 (45%), Gaps = 50/495 (10%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
           GF++ T  GN  LD Y + G  D  L +FD +  ++ +SWNI                  
Sbjct: 65  GFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIM----------------- 107

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC--- 161
                         I G+ S G SD  L  F + ++    P+  T  + +    S     
Sbjct: 108 --------------IHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAME 153

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G ++HG +IRSG  L    + NSL+ MY     +  A  +F  M E D+ISW+ +I G 
Sbjct: 154 EGLKMHGYIIRSGF-LDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGY 211

Query: 222 FNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             +G  ++AL  F  M  +     D  T+  V+ AC    ++  G+ V  + +  G   +
Sbjct: 212 VQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYD 271

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V ++ ID++SKC+  E + + F ++   +    N +IS   R      AL LF  M +
Sbjct: 272 LFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGK 331

Query: 341 EDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
              R  E TL  +L S          +F HS+ I+ G++ N  V +SL++ Y+K   I+ 
Sbjct: 332 AGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIEL 391

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           + ++F +L  +D VSW+ ++ G    G+  E + +F+E+ +    P+ +T+ ++L A + 
Sbjct: 392 AWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSV 451

Query: 460 GGFVDK-----GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
              + +     G+ +   +  E  V         I+D+  + G++G +      +P +  
Sbjct: 452 SADLKRSKWAHGIAIRRGLAAEVAVG------TAILDMYAKCGEIGLSRKAFDQIPEKNI 505

Query: 515 CSIWESILRASAIYG 529
            S W +++ A  + G
Sbjct: 506 VS-WGAMIAACGMNG 519



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 178/395 (45%), Gaps = 37/395 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +       +++HG +   G +   ++GN  +D+YS+    +   + F+E+P +N
Sbjct: 243 VLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRN 302

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SWN  + GL++++    AL +F                      YS         M  
Sbjct: 303 TVSWNSIISGLVRTEKHSEALSLF----------------------YS---------MGK 331

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G R    T   LL +          K IH  +IR G  L+  V+ NSLID Y K  ++ 
Sbjct: 332 AGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVI-NSLIDAYSKCDLIE 390

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ +F  ++  D +SW+++I+G  + G  + A+  F  M  +   P+  TI  ++ A +
Sbjct: 391 LAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFS 450

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +L + K    ++++ G  +   V +A +D+++KC  +  S + F+Q+   +      
Sbjct: 451 VSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGA 510

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKS 375
           MI+  G  G    AL L   M    ++P   T   VLS+      VE G S F +M    
Sbjct: 511 MIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDH 570

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
           G +      S +++M ++ G ++S+  +  K+ +R
Sbjct: 571 GVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPER 605


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/480 (32%), Positives = 265/480 (55%), Gaps = 2/480 (0%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI-DMYGKLGVLYYAFGVFLNMEEL 209
           ++LLS  SS    +QIH   IR G+ L+N  +G  LI  +      + YA  +F  ++  
Sbjct: 44  ALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNP 103

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +I +WN++I G   S     AL+ +  M  S   PD +T   ++ A  KL ++ +G++V 
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVH 163

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +++++ GF S   V +  + +++ C   E + +LFE +   +    N +I+ Y   G   
Sbjct: 164 SIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPN 223

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF+ M    + P  FT+  +LS+   +  +  G + H   +K G D N    ++L+
Sbjct: 224 EALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALL 283

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           ++YAK GSI  + ++F +++++ +VSW ++++GL  NG   E L++F+EL  +GL P  I
Sbjct: 284 DLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEI 343

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G VD+G   F  MKEEYG++P  EHY C++DLL +AG + +A +    
Sbjct: 344 TFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN 403

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP QP   +W ++L A  I+G + L E    +++ L+      Y LL+  YA   RW  +
Sbjct: 404 MPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDV 463

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +V++ M + G+ K  G S + ++NR++ F  G+  H   ++IY+ L  +T  ++ EG V
Sbjct: 464 HKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYV 523



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 166/336 (49%), Gaps = 7/336 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A ++F +I  P++ +WN+MI GYA       ALE++ +M +  + P   T+  LL  ++ 
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 160 ---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G+++H   IR+G   S V + N+L+ MY   G    A  +F  M E ++++WNS
Sbjct: 153 LMDVREGEKVHSIAIRNGFE-SLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNS 211

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+G   +G    AL  F  M   G  PD +T+  +++AC +L  L  G++     VKVG
Sbjct: 212 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              N    +A +DL++KC  +  + ++F++++         +I      GFG+ ALELF+
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHG-SQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
            + R+ + P+E T   VL +      V+ G   F  M  + G          ++++  + 
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391

Query: 395 GSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAA 429
           G +  + E    +  + + V W T++   T +G  A
Sbjct: 392 GLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 427



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 10/249 (4%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           ++A K+F+ + E ++V+WNS+I+GYA  G  + AL +F +M L+GV P GFT   LLS  
Sbjct: 192 ESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 251

Query: 158 S---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +   +   G++ H  M++ GL   N+  GN+L+D+Y K G +  A  VF  MEE  ++SW
Sbjct: 252 AELGALALGRRAHVYMVKVGLD-GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSW 310

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA-LSV 273
            SLI G   +G+G+ AL+ F  +   G  P E T   V+ AC+    +D+G   F  +  
Sbjct: 311 TSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE 370

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI----STYGRYGFGE 329
           + G +         +DL  +   ++ +    + +     AV+   +    + +G    GE
Sbjct: 371 EYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGE 430

Query: 330 VA-LELFQL 337
           VA  +L QL
Sbjct: 431 VARAQLLQL 439



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 56/238 (23%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    +  H ++ K+G + + + GN  LDLY++ G+     ++FDE+ +K+
Sbjct: 247 LLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKS 306

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                                S+I G A  G+   ALE+F +++ 
Sbjct: 307 VVSW-------------------------------TSLIVGLAVNGFGKEALELFKELER 335

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LSNVVLGNSLIDM 189
           +G+ PS  TF  +L   S        H  M+  G             +  +     ++D+
Sbjct: 336 KGLMPSEITFVGVLYACS--------HCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDL 387

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGY---GELALDQFYSM--RYSG 241
            G+ G++  A     NM  + + + W +L+  C   G+   GE+A  Q   +  ++SG
Sbjct: 388 LGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSG 445


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/505 (29%), Positives = 283/505 (56%), Gaps = 5/505 (0%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+ +L+ A KVFD I   +VVSW SM+SG    G+++  L +F++M+ + V PS +T + 
Sbjct: 169 KAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMAS 228

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   + + S   G+ +HGS+I+ G+   N  +  +++DMY K G +  A  +F  +  +
Sbjct: 229 VLMACTMLGSLHQGRWVHGSVIKHGMVF-NPFITAAVLDMYVKCGEVEDARRLFDELGFV 287

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ W ++I G   +G    AL  F   ++    P+  TI+ V++A  +LRNL  G+ + 
Sbjct: 288 DLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIH 347

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           A+SVK+  + N +V++A +D+++KC  L ++  +F ++   D    N +I+ Y     G 
Sbjct: 348 AMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGN 407

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF  M  +   P   ++   LS+ + +  +  G  FH+ A+K  F SN  V ++L+
Sbjct: 408 EALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALL 467

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            +Y K   + S+  +F ++ +R+ V+W  ++ G    G +A ++D+  ++L++ + P+ +
Sbjct: 468 NLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEV 527

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              ++L  C++ G V  G + F +M + + + P  +HYAC++D+L +AG L +A++    
Sbjct: 528 VFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQK 587

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP     SIW + L    ++  ++  E    RMM L    P  Y L++  Y   GRW+  
Sbjct: 588 MPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKS 647

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKN 593
           + ++++M++ G+ K+ GCS +G++N
Sbjct: 648 LAIRRLMQERGLVKLPGCSSVGLEN 672



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 195/370 (52%), Gaps = 12/370 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L +A +V DE P PD  ++   +  +A+ G    AL +   M+ +   P      +LLS
Sbjct: 70  DLASARRVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRC--PEAHDDVVLLS 127

Query: 156 TVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
               A        +G+++H + +++G +   V+  N L+DMY K G L  A  VF  +  
Sbjct: 128 LALKASVRSADFRYGRRLHCNAVKAGGADGFVM--NCLVDMYAKAGDLENARKVFDRILG 185

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW S++SGC  +G+ E  L  F  MR     P EYT++ V+ ACT L +L +G+ V
Sbjct: 186 RNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWV 245

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G + N  + +A +D++ KC  +ED+ RLF++L   D  +   MI  Y + G  
Sbjct: 246 HGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSP 305

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             AL LF       I P   T++ VLS S  +  +  G   H+M++K     N VV ++L
Sbjct: 306 LDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNAL 365

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK  ++  +  IF ++  +D+V+WN+++ G  +N    E L +F ++  +G  PD 
Sbjct: 366 VDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDA 425

Query: 448 ITLAAVLLAC 457
           I++   L AC
Sbjct: 426 ISIVNALSAC 435



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 215/469 (45%), Gaps = 48/469 (10%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    S    + +HG + K G   + ++    LD+Y + G  +D                
Sbjct: 233 CTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVED---------------- 276

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                          A ++FDE+   D+V W +MI GY   G    AL +FS  +   + 
Sbjct: 277 ---------------ARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIV 321

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + +LS  +   +   G+ IH   ++  L + N V+ N+L+DMY K   L  A G
Sbjct: 322 PNSVTIATVLSASAQLRNLSLGRLIHAMSVKL-LVIENDVVMNALVDMYAKCKALSEANG 380

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  +   D+++WNSLI+G   +  G  AL  F  MR  G SPD  +I   ++AC  L +
Sbjct: 381 IFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGD 440

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L  GK     +VK  FLSN  V +A ++L++KC  L  + R+F ++   +      MI  
Sbjct: 441 LLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGG 500

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDS 379
           YG  G    +++L   ML+++I+P E   + +LS+      V  G   F SMA       
Sbjct: 501 YGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITP 560

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +    + ++++ A+ G+++ + E   K+    D+  W   + G   + R    L+  EE 
Sbjct: 561 SMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSR----LEFGEEA 616

Query: 439 LEEG--LPPDRITLAAVL--LACNYGGFVDKGMLVFSAMKEEYGV-MPG 482
           +     L PD+     ++  L  +YG + DK + +   M+E   V +PG
Sbjct: 617 INRMMVLHPDKPDFYVLMSNLYTSYGRW-DKSLAIRRLMQERGLVKLPG 664



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 130/263 (49%), Gaps = 8/263 (3%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ AC  L +L   + + A  +  G L      +  +  ++    L  + R+ ++  R D
Sbjct: 29  LLPACATLPSL---RALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPD 85

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLRE--DIRPTEFTLSCVL-SSIPIPPVEHGSQF 368
                V +  +   G    AL L + M R   +       LS  L +S+      +G + 
Sbjct: 86  PYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRL 145

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H  A+K+G  ++  V + L++MYAK G ++++ ++F ++  R++VSW +++ G  QNG A
Sbjct: 146 HCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFA 204

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            E L +F E+ EE + P   T+A+VL+AC   G + +G  V  ++  ++G++      A 
Sbjct: 205 EEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVI-KHGMVFNPFITAA 263

Query: 489 IIDLLCQAGQLGKAIDITSTMPF 511
           ++D+  + G++  A  +   + F
Sbjct: 264 VLDMYVKCGEVEDARRLFDELGF 286


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 163/516 (31%), Positives = 275/516 (53%), Gaps = 9/516 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-V 143
           N  L   +K   L   L++FDE+PE +VVSW+++I+G+   G  + AL +F +M   G +
Sbjct: 254 NHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTI 313

Query: 144 RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            P+ FT    L   S         QI+  ++R G   SNV L N+ +    +   L  A 
Sbjct: 314 MPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYG-SNVFLMNAFLTALIRHEKLLEAL 372

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKL 259
            VF +    D +SWN++++G     Y EL   +F+  M      PD +T + ++     L
Sbjct: 373 EVFESCLSKDTVSWNAMMAGYLQLAYFELP--KFWRRMNLESVKPDNFTFASILTGLAAL 430

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
                G QV    VK G+ ++  V ++  D++ K  +L D  + F+++   D      M 
Sbjct: 431 SEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMA 490

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           +   + G    ALE+   M    +R  +FTL+  L+S   +  +E G +FH + IK G D
Sbjct: 491 AGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTD 550

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  V ++L++MYAK G + S+  +F  +D+R +VSW T++MG   NG+  E L +F+E+
Sbjct: 551 VDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEM 610

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            +    P+ IT   VL AC+ GGF+D+    FS+M  ++G+ P E+HY C+++LL +AG 
Sbjct: 611 RKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGC 670

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           + +A D+   MPFQPG  +W+++L A  ++GD++  +  AE  ++L    P  Y LL+  
Sbjct: 671 IKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNM 730

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
           +A    W+++  ++++M    + KV G SW+    R
Sbjct: 731 FAGGDNWDSVGILRELMETRDVKKVPGSSWMSNMRR 766



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           ++ C +  S +  K  HG   KLG +    + N  LD+Y++ G       +F  + +++ 
Sbjct: 525 LNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSV 584

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +SW   + G   +     AL++FDE+     EP+ +++  +++  +  G+ D A + FS 
Sbjct: 585 VSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSS 644

Query: 138 MQL-QGVRPS 146
           M    G+ PS
Sbjct: 645 MSADHGIAPS 654



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 348 FTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           F   CVL+S       HGS  H+  +K     +    + ++  Y K G +    ++F ++
Sbjct: 221 FLQRCVLTS----DSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEM 276

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACN 458
            +R++VSW+ I+ G  Q+GR  E L +F  +  +G + P+  TL + L AC+
Sbjct: 277 PERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACS 328


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/597 (29%), Positives = 289/597 (48%), Gaps = 73/597 (12%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSS 159
           V   IP+P + S++S+I           ++ +FS+M   G+ P       L    + +S+
Sbjct: 72  VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131

Query: 160 ACHGKQIH---------------GSM----IRSG-----------LSLSNVVLGNSLIDM 189
              GKQIH               GSM    +R G           +S  +VV  ++L+  
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191

Query: 190 YGKLGVLYYAFGVFLNME----ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           Y + G L     +   ME    E +I+SWN ++SG   SGY + A+  F  + + G+ PD
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           + T+S V+ +      L+ G+ +    +K G L +  V+SA ID++ K   +   + LF 
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQL---------------------------- 337
           Q +  +  V N  I+   R G  + ALE+F+L                            
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 338 ---MLRE----DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
              + RE     ++P   T+  +L +   I  + HG   H  A++     N  V S+L++
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALID 431

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G I+ S  +F  +  ++LV WN++M G + +G+A E + +FE L+   L PD I+
Sbjct: 432 MYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFIS 491

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             ++L AC   G  D+G   F  M EEYG+ P  EHY+C+++LL +AG+L +A D+   M
Sbjct: 492 FTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM 551

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PF+P   +W ++L +  +  +V L E  AE++  L+  +P  Y LL+  YA +G W  + 
Sbjct: 552 PFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVD 611

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            ++  M   G+ K  GCSWI +KNR+YT  AG+  H    +I   +  ++ EM   G
Sbjct: 612 SIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSG 668



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 173/379 (45%), Gaps = 43/379 (11%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L   C    +F   K IH      G +   ++      +Y R G   D  ++FD +  K
Sbjct: 121 NLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDK 180

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMF 135
           + ++ +  L    +   L+  +++  E+     E ++VSWN ++SG+   GY   A+ MF
Sbjct: 181 DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMF 240

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            K+   G  P   T S +L +V  +     G+ IHG +I+ GL     V+ +++IDMYGK
Sbjct: 241 QKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI-SAMIDMYGK 299

Query: 193 LGVLYYAFGVFLNME-----------------------------------ELDIISWNSL 217
            G +Y    +F   E                                   EL+++SW S+
Sbjct: 300 SGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I+GC  +G    AL+ F  M+ +G  P+  TI  ++ AC  +  L  G+     +V+V  
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL 419

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
           L N  V SA ID+++KC R+  S  +F  +   +    N +++ +  +G  +  + +F+ 
Sbjct: 420 LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFES 479

Query: 338 MLREDIRPTEFTLSCVLSS 356
           ++R  ++P   + + +LS+
Sbjct: 480 LMRTRLKPDFISFTSLLSA 498



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 149/285 (52%), Gaps = 9/285 (3%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            +  + IHG++ K G      + +  +D+Y + G    ++ LF++         N  + G
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327

Query: 91  LLKSDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
           L ++  +D AL++F    ++  E +VVSW S+I+G A  G    ALE+F +MQ+ GV+P+
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 147 GFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   +L     +++  HG+  HG  +R  L L NV +G++LIDMY K G +  +  VF
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVF 446

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   +++ WNSL++G    G  +  +  F S+  +   PD  + + +++AC ++   D
Sbjct: 447 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 264 KGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +G + F  +S + G        S  ++L  +  +L+++  L +++
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM 551



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/471 (19%), Positives = 190/471 (40%), Gaps = 75/471 (15%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           Q H  +++SG + ++  +   LI  Y        A  V  ++ +  I S++SLI     +
Sbjct: 36  QAHARILKSG-AQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                ++  F  M   G  PD + +  +   C +L     GKQ+  +S   G   ++ V 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVI----------------------------- 315
            +   ++ +C R+ D+ ++F+++   D                                 
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 316 ------NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
                 N ++S + R G+ + A+ +FQ +      P + T+S VL S+     +  G   
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGS-------------------------------I 397
           H   IK G   +  V S++++MY K+G                                +
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 398 DSSTEIFVKLDKR----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           D + E+F    ++    ++VSW +I+ G  QNG+  E L++F E+   G+ P+ +T+ ++
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC     +  G            ++      + +ID+  + G++  +  + + MP + 
Sbjct: 395 LPACGNIAALGHGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK- 452

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
               W S++   +++G  K   ++ E +M  +L P  + ++ L  A    G
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 503



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    ++ HG   ++    + ++G+  +D+Y++ G  +    +F+ +P KN
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFS 136
            + WN  + G          + +F+ +     +PD +S+ S++S     G +D   + F 
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 137 KMQLQ-GVRPSGFTFSILLSTVSSA 160
            M  + G++P    +S +++ +  A
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRA 538


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/626 (28%), Positives = 308/626 (49%), Gaps = 44/626 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    SF   + +HG + K GF+   ++ N  + +YS  G+               
Sbjct: 130 VLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGS--------------- 174

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           L  A  +FD+I   DVVSW++MI  Y   G  D AL++   M +
Sbjct: 175 ----------------LALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHV 218

Query: 141 QGVRPSGF---TFSILLSTVSSACHGKQIHGSMIRSG-LSLSNVVLGNSLIDMYGKLGVL 196
             V+PS     + + +L+ ++    GK +H  ++R+G    S V L  +LIDMY K   L
Sbjct: 219 MRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENL 278

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            YA  VF  + +  IISW ++I+   +       +  F  M   G  P+E T+  ++  C
Sbjct: 279 AYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKEC 338

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L+ GK + A +++ GF  + ++ +A ID++ KC  +  +  +F+     D  + +
Sbjct: 339 GTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWS 398

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKS 375
            MIS+Y +    + A ++F  M    IRP E T+ S ++       +E G   HS   K 
Sbjct: 399 AMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQ 458

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G   + ++ +S ++MYA  G ID++  +F +   RD+  WN ++ G   +G     L++F
Sbjct: 459 GIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELF 518

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
           EE+   G+ P+ IT    L AC++ G + +G  +F  M  E+G  P  EHY C++DLL +
Sbjct: 519 EEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGR 578

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS-L 554
           AG L +A ++  +MP +P  +++ S L A  ++ ++KL E  A++ + L+ P    Y+ L
Sbjct: 579 AGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLE-PHKSGYNVL 637

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           ++  YA   RW  +  +++ M+  GI K  G S I +   ++ F  G+ +H   +K+Y +
Sbjct: 638 MSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEM 697

Query: 615 LRLLTWEMEDEG------CVYLECDK 634
           +  +  ++ED G      CV    DK
Sbjct: 698 IDEMREKLEDAGYTPDVSCVLHNIDK 723



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 119/238 (50%), Gaps = 3/238 (1%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           MR +    D + I  V+ AC  + +   G++V    VK GF  +  V +A I ++S+   
Sbjct: 115 MRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGS 174

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L  +  LF++++  D    + MI +Y R G  + AL+L + M    ++P+E  +  +   
Sbjct: 175 LALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHV 234

Query: 357 IP-IPPVEHGSQFHSMAIKSGF--DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           +  +  ++ G   H+  +++G    S   + ++L++MY K  ++  +  +F  L K  ++
Sbjct: 235 LAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASII 294

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           SW  ++          E + +F ++L EG+ P+ IT+ +++  C   G ++ G L+ +
Sbjct: 295 SWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
           A+ + +I++Y +      A +++  M   D     F +  VL +   IP    G + H  
Sbjct: 90  AIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGF 149

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            +K+GF  +  V ++L+ MY++ GS+  +  +F K++ +D+VSW+T++    ++G   E 
Sbjct: 150 VVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEA 209

Query: 432 LDVFEELLEEGLPPDRITLAAV 453
           LD+  ++    + P  I + ++
Sbjct: 210 LDLLRDMHVMRVKPSEIGMISI 231


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 174/618 (28%), Positives = 316/618 (51%), Gaps = 43/618 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C     +   + +H H+ + GF     + N  + +Y++ G   DV+          
Sbjct: 201 VLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCG---DVV---------- 247

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A KVFD +   D +SWN+MI+G+   G  +  LE+F  M  
Sbjct: 248 ------------------AARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQ 289

Query: 141 QGVRPSGFTF------SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
             V+P+  T       S LLS ++ A   K++HG  ++ G + ++V   NSLI MY  LG
Sbjct: 290 DEVQPNLMTITSVTVASGLLSDITFA---KEMHGLAVKRGFA-TDVAFCNSLIQMYASLG 345

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           ++  A  VF  M+  D +SW ++ISG   +G+ + AL+ +  M  +  SPD+ TI+  + 
Sbjct: 346 MMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALA 405

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L +LD G ++  L+   GF+S  +V +A +++++K  R++ ++ +F+ +   D   
Sbjct: 406 ACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVS 465

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAI 373
            + MI+ +        AL  F+ ML  D++P   T ++ + +      +  G + H+  +
Sbjct: 466 WSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHVL 524

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           + G      + ++L+++Y K G    +   F     +D+VSWN ++ G   +G     L 
Sbjct: 525 RCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALS 584

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            F ++++ G  PD +T  A+L AC+ GG V +G  +F +M ++Y ++P  +HYAC++DLL
Sbjct: 585 FFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLL 644

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            + GQL +A +  + MP  P  ++W ++L    I+  V+L E  A+ +++L+      + 
Sbjct: 645 SRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHV 704

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL   YA  G W+ + RV+K MR+ G++  +GCSW+ +K  ++ F   +  H   ++I  
Sbjct: 705 LLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINT 764

Query: 614 VLRLLTWEMEDEGCVYLE 631
           VL  +   M+  GC  +E
Sbjct: 765 VLEGIYERMKASGCAPVE 782



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 201/370 (54%), Gaps = 6/370 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L  L++      A +VF ++PE DV SWN M+ GY   G  + AL+++ +M   GVR
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TF  +L +   V     G+++H  ++R G +    VL N+L+ MY K G +  A  
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVL-NALMTMYAKCGDVVAARK 251

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M  +D ISWN++I+G F +G     L+ F +M      P+  TI+ V  A   L +
Sbjct: 252 VFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSD 311

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +   K++  L+VK GF ++    ++ I +++    +  +  +F ++D  D      MIS 
Sbjct: 312 ITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISG 371

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSN 380
           Y + GF + ALE++ LM   ++ P + T++  L++      ++ G + H +A   GF S 
Sbjct: 372 YEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSY 431

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            VV ++L+EMYAK+  ID + E+F  + ++D+VSW++++ G   N R  E L  F  +L 
Sbjct: 432 VVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA 491

Query: 441 EGLPPDRITL 450
           + + P+ +T 
Sbjct: 492 D-VKPNSVTF 500



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 186/342 (54%), Gaps = 3/342 (0%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           LGN+++ M  + G  ++A+ VF  M E D+ SWN ++ G   +G  E ALD ++ M ++G
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD YT   V+ +C  + +   G++V A  ++ GF     VL+A + +++KC  +  + 
Sbjct: 191 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAAR 250

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV-LSSIPIP 360
           ++F+ +   D    N MI+ +   G     LELF  ML+++++P   T++ V ++S  + 
Sbjct: 251 KVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLS 310

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +    + H +A+K GF ++    +SL++MYA  G +  +  +F ++D RD +SW  ++ 
Sbjct: 311 DITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMIS 370

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  +NG   + L+V+  +    + PD IT+A+ L AC   G +D G+ +   + E  G M
Sbjct: 371 GYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE-LAESKGFM 429

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
                   ++++  ++ ++ KAI++   MP +   S W S++
Sbjct: 430 SYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVS-WSSMI 470


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/525 (30%), Positives = 271/525 (51%), Gaps = 6/525 (1%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF----SILLSTVSSACHG 163
           P P VVS+ + ISG A       AL  F+ M   G+RP+ FTF        S    +  G
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
            Q+H   +R G    +  +  + +DMY K G L  A  +F  M   ++++WN++++    
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVL 199

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G     ++ ++ +R +G  P+  ++    NAC  + NL  G+Q +    K GF  +  V
Sbjct: 200 DGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSV 259

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            ++ +D + KC  +  +  +F+ +   +      M+  Y + G  E A  ++    R   
Sbjct: 260 SNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGE 319

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            PT+F +S VL++   +  ++ G   H++A++S  DSN  VAS+L++MY K G I+ + +
Sbjct: 320 EPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQ 379

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLACNYGG 461
           +F ++ +R+LV+WN ++ G    G A   L VF+++ + +   P+ ITL  VL AC+ GG
Sbjct: 380 VFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGG 439

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
              +G  +F  MK  +G+ P  EHYAC++DLLC+AG   +A  I   MP +P  S+W ++
Sbjct: 440 LTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGAL 499

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L    ++G  +L    AE++ +L       + LL+   A  GRW     V+K M+  GI 
Sbjct: 500 LGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIK 559

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           K  G SWI  KN ++ F A +  H   ++I  +L  L  +M+  G
Sbjct: 560 KDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAG 604



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 175/392 (44%), Gaps = 41/392 (10%)

Query: 57  LDLYSRFGTSDDVLQLFDEIPQKNCISWNICL-RGLLKSDNLDTALKVFDEIPE---PDV 112
           LD+Y + G      +LFDE+P +N ++WN  +   +L    L+T    F        P+V
Sbjct: 163 LDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNV 222

Query: 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIR 172
           VS  +  +  A  G ++ +L                              G+Q +G + +
Sbjct: 223 VSVCAFFN--ACAGMTNLSL------------------------------GEQFYGFVAK 250

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
            G    +V + NS++D YGK   +  A  VF  M   + +SW S++     +G  E A  
Sbjct: 251 CGFG-KDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFF 309

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            +   R +G  P ++ +S V+  C  L  LD G+ + A++V+    SN  V SA +D++ 
Sbjct: 310 VYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYG 369

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLS 351
           KC  +ED+ ++F ++ + +    N MI  Y   G    AL +F ++++ ++  P   TL 
Sbjct: 370 KCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLV 429

Query: 352 CVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            VL++     +  E    F +M  + G +      + ++++  + G  + + +I   +  
Sbjct: 430 NVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPM 489

Query: 410 RDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
           R  +S W  ++ G   +G+        E+L E
Sbjct: 490 RPSISVWGALLGGCKMHGKTELGRIAAEKLFE 521



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 43/333 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S C+   + C    +    +  +G + K GF     + N  +D Y +            
Sbjct: 223 VSVCA-FFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKC----------- 270

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                 C+                 A  VFD +   + VSW SM+  YA  G  + A  +
Sbjct: 271 -----RCVG---------------KARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFV 310

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   +  G  P+ F  S +L+T +       G+ +H   +RS +  SN+ + ++L+DMYG
Sbjct: 311 YLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCID-SNIFVASALVDMYG 369

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTIS 250
           K G +  A  VF  M + ++++WN++I G  + G    AL  F  M      +P+  T+ 
Sbjct: 370 KCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLV 429

Query: 251 IVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD- 308
            V+ AC++     +G ++F  +  + G        +  +DL  +    E + ++ + +  
Sbjct: 430 NVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPM 489

Query: 309 RWDYAVINVMI---STYGRYGFGEVALE-LFQL 337
           R   +V   ++     +G+   G +A E LF+L
Sbjct: 490 RPSISVWGALLGGCKMHGKTELGRIAAEKLFEL 522


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 167/609 (27%), Positives = 308/609 (50%), Gaps = 45/609 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C   ++ +  + +H HL   GF     L    L +Y++ G+ DD          
Sbjct: 14  TSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDD---------- 63

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VF+ +   D+ +W+S+IS YA  G  + A+ ++ +M
Sbjct: 64  ---------------------AKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRM 102

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P+  TF+  L   ++V+    G+ IH  ++ S +   +V L +SL++MY K   
Sbjct: 103 IAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDV-LQDSLLNMYLKCDE 161

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           +  A  VF  M+  ++ S+ ++IS    +G    AL+ F  M +     P+ YT + ++ 
Sbjct: 162 MVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILG 221

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A   L NL+KG++V       GF +N +V +A + ++ KC    ++ ++F+ +   +   
Sbjct: 222 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 281

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAI 373
              MI+ Y ++G  + AL LF+ M   D+ P+  + S  L++  +   ++ G + H   +
Sbjct: 282 WTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVV 338

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++   S  +  +SL+ MYA+ GS+D +  +F ++  RD  S N ++   TQ+GR  + L 
Sbjct: 339 EAHLASPQM-ETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALR 397

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           ++  + +EG+P D IT  +VL+AC++   V      F ++  ++GV+P  EHY C++D+L
Sbjct: 398 IYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVL 457

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            ++G+LG A ++  TMP+Q     W ++L     +GD+   E  A ++ +L     LPY 
Sbjct: 458 GRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYV 517

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG----ELQHHGGQ 609
            L+  YA   R++   RV+K M + G+      S+I I N ++ F +G    + + H G+
Sbjct: 518 FLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEGHDGR 577

Query: 610 KIYLVLRLL 618
            +  V  LL
Sbjct: 578 TMERVRSLL 586



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 172/372 (46%), Gaps = 32/372 (8%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M   G   D++ ++ ++ ACTKL+ L++G+++    +  GF ++  + +A + +++KC  
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L+D+ R+FE ++  D    + +IS Y R G GE+A+ L++ M+ E + P   T +C L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 357 IP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              +  +  G   H   + S    + V+  SL+ MY K   +  + ++F  +  R++ S+
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 416 NTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKG-------- 466
             ++    Q G  AE L++F  + + E + P+  T A +L A    G ++KG        
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 467 -------MLVFSAMKEEYGVM--PGEEH-------------YACIIDLLCQAGQLGKAID 504
                  ++V +A+   YG    P E               +  +I    Q G   +A++
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   M  +P    + S L A A+ G +     +  R+++  L SP   + L   YA  G 
Sbjct: 301 LFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCGS 360

Query: 565 WEAIVRVKKVMR 576
            +   RV   M+
Sbjct: 361 LDDARRVFNRMK 372


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/597 (29%), Positives = 289/597 (48%), Gaps = 73/597 (12%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSS 159
           V   IP+P + S++S+I           ++ +FS+M   G+ P       L    + +S+
Sbjct: 72  VLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSA 131

Query: 160 ACHGKQIH---------------GSM----IRSG-----------LSLSNVVLGNSLIDM 189
              GKQIH               GSM    +R G           +S  +VV  ++L+  
Sbjct: 132 FKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191

Query: 190 YGKLGVLYYAFGVFLNME----ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           Y + G L     +   ME    E +I+SWN ++SG   SGY + A+  F  + + G+ PD
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           + T+S V+ +      L+ G+ +    +K G L +  V+SA ID++ K   +   + LF 
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQL---------------------------- 337
           Q +  +  V N  I+   R G  + ALE+F+L                            
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 338 ---MLRE----DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
              + RE     ++P   T+  +L +   I  + HG   H  A++     N  V S+L++
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALID 431

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G I+ S  +F  +  ++LV WN++M G + +G+A E + +FE L+   L PD I+
Sbjct: 432 MYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFIS 491

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             ++L AC   G  D+G   F  M EEYG+ P  EHY+C+++LL +AG+L +A D+   M
Sbjct: 492 FTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM 551

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
           PF+P   +W ++L +  +  +V L E  AE++  L+  +P  Y LL+  YA +G W  + 
Sbjct: 552 PFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVD 611

Query: 570 RVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            ++  M   G+ K  GCSWI +KNR+YT  AG+  H    +I   +  ++ EM   G
Sbjct: 612 SIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSG 668



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 173/378 (45%), Gaps = 43/378 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L   C    +F   K IH      G +   ++      +Y R G   D  ++FD +  K+
Sbjct: 122 LFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD 181

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++ +  L    +   L+  +++  E+     E ++VSWN ++SG+   GY   A+ MF 
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241

Query: 137 KMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           K+   G  P   T S +L +V  +     G+ IHG +I+ GL     V+ +++IDMYGK 
Sbjct: 242 KIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI-SAMIDMYGKS 300

Query: 194 GVLYYAFGVFLNME-----------------------------------ELDIISWNSLI 218
           G +Y    +F   E                                   EL+++SW S+I
Sbjct: 301 GHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSII 360

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +GC  +G    AL+ F  M+ +G  P+  TI  ++ AC  +  L  G+     +V+V  L
Sbjct: 361 AGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLL 420

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            N  V SA ID+++KC R+  S  +F  +   +    N +++ +  +G  +  + +F+ +
Sbjct: 421 DNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESL 480

Query: 339 LREDIRPTEFTLSCVLSS 356
           +R  ++P   + + +LS+
Sbjct: 481 MRTRLKPDFISFTSLLSA 498



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 149/285 (52%), Gaps = 9/285 (3%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            +  + IHG++ K G      + +  +D+Y + G    ++ LF++         N  + G
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327

Query: 91  LLKSDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
           L ++  +D AL++F    ++  E +VVSW S+I+G A  G    ALE+F +MQ+ GV+P+
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 147 GFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   +L     +++  HG+  HG  +R  L L NV +G++LIDMY K G +  +  VF
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHL-LDNVHVGSALIDMYAKCGRINLSQIVF 446

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M   +++ WNSL++G    G  +  +  F S+  +   PD  + + +++AC ++   D
Sbjct: 447 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 264 KGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           +G + F  +S + G        S  ++L  +  +L+++  L +++
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM 551



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/471 (19%), Positives = 190/471 (40%), Gaps = 75/471 (15%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           Q H  +++SG + ++  +   LI  Y        A  V  ++ +  I S++SLI     +
Sbjct: 36  QAHARILKSG-AQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                ++  F  M   G  PD + +  +   C +L     GKQ+  +S   G   ++ V 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVI----------------------------- 315
            +   ++ +C R+ D+ ++F+++   D                                 
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 316 ------NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
                 N ++S + R G+ + A+ +FQ +      P + T+S VL S+     +  G   
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGS-------------------------------I 397
           H   IK G   +  V S++++MY K+G                                +
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 398 DSSTEIFVKLDKR----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           D + E+F    ++    ++VSW +I+ G  QNG+  E L++F E+   G+ P+ +T+ ++
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC     +  G            ++      + +ID+  + G++  +  + + MP + 
Sbjct: 395 LPACGNIAALGHGRST-HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK- 452

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
               W S++   +++G  K   ++ E +M  +L P  + ++ L  A    G
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 503



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +  +    ++ HG   ++    + ++G+  +D+Y++ G  +    +F+ +P KN
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFS 136
            + WN  + G          + +F+ +     +PD +S+ S++S     G +D   + F 
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513

Query: 137 KMQLQ-GVRPSGFTFSILLSTVSSA 160
            M  + G++P    +S +++ +  A
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRA 538


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 174/605 (28%), Positives = 302/605 (49%), Gaps = 38/605 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C        ++ IH H+ K  F ++ ++    +D+Y + G  +D            
Sbjct: 59  VLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLED------------ 106

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A  VF E+P  D+ SWN+M+ G+A  G+ D    +   M+L
Sbjct: 107 -------------------AHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRL 147

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+RP   T  +L+ +   V S      ++   IR G+ + +V + N+LI  Y K G L 
Sbjct: 148 SGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHM-DVSVANTLIAAYSKCGNLC 206

Query: 198 YAFGVF--LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            A  +F  +N     ++SWNS+I+   N      A++ +  M   G+SPD  TI  ++++
Sbjct: 207 SAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSS 266

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C + + L  G  V +  VK+G  S+  V++  I ++SKC  +  +  LF  +        
Sbjct: 267 CMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSW 326

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIK 374
            VMIS Y   G+   A+ LF  M     +P   T+  ++S       +E G    + +I 
Sbjct: 327 TVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSIN 386

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +G   N VV ++L++MYAK G  + + E+F  +  R +VSW T++     NG   + L++
Sbjct: 387 NGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALEL 446

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F  +LE G+ P+ IT  AVL AC +GG V++G+  F+ M ++YG+ PG +HY+C++DLL 
Sbjct: 447 FFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLG 506

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G L +A++I  +MPF+P   IW ++L A  ++G +++ + V+E++ +L+    +PY  
Sbjct: 507 RKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVE 566

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           +   YA    WE +  +++ M+   + K  G S I +  +   F   +  H     IY +
Sbjct: 567 MANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIFTVEDRDHPETLYIYDM 626

Query: 615 LRLLT 619
           L  LT
Sbjct: 627 LDGLT 631



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 236/480 (49%), Gaps = 19/480 (3%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQ---IHGSM 170
           +WNS      + G++  AL +F +M+  G+ P+  TF  +L   +   H +    IH  +
Sbjct: 20  TWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHV 79

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           ++S    SN+ +  + +DMY K G L  A  VF+ M   DI SWN+++ G   SG+ +  
Sbjct: 80  LKSCFQ-SNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRL 138

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
                 MR SG  PD  T+ ++I++  ++++L     V++  +++G   +  V +  I  
Sbjct: 139 SCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAA 198

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVI--NVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
           +SKC  L  +  LF++++    +V+  N MI+ Y  +     A+  ++ ML     P   
Sbjct: 199 YSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIS 258

Query: 349 TLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           T+  +LSS   P  + HG   HS  +K G DS+  V ++L+ MY+K G + S+  +F  +
Sbjct: 259 TILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGM 318

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
             +  VSW  ++    + G  +E + +F  +   G  PD +T+ A++  C   G ++ G 
Sbjct: 319 SDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGK 378

Query: 468 LVFSAMKEEYGVMPG--EEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523
            +     + Y +  G  +    C  +ID+  + G    A ++  TM  +   S W +++ 
Sbjct: 379 WI-----DNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMIT 432

Query: 524 ASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVM-RKNGIN 581
           A A+ GDVK    +   M+++ + P+ + +  + QA A  G  E  +    +M +K GIN
Sbjct: 433 ACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGIN 492



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           + +WNS      N G+ + AL  F  M+ SG +P+  T   V+ AC KL +L   + + A
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             +K  F SN  V +AT+D++ KC RLED+  +F ++   D A  N M+  + + GF + 
Sbjct: 78  HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDR 137

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
              L + M    IRP   T+  ++ SI  +  +      +S  I+ G   +  VA++L+ 
Sbjct: 138 LSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIA 197

Query: 390 MYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
            Y+K G++ S+  +F +++   R +VSWN+++       +  + ++ ++ +L+ G  PD 
Sbjct: 198 AYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDI 257

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID-LLCQAGQLG 500
            T+  +L +C     +  G+LV S     +GV  G +   C+++ L+C   + G
Sbjct: 258 STILNLLSSCMQPKALFHGLLVHS-----HGVKLGCDSDVCVVNTLICMYSKCG 306



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 41/327 (12%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L+  C+  K+      +H H  KLG ++   + N  + +YS+ G       LF+ +  K
Sbjct: 262 NLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDK 321

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
            C+SW +                               MIS YA  GY   A+ +F+ M+
Sbjct: 322 TCVSWTV-------------------------------MISAYAEKGYMSEAMTLFNAME 350

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G +P   T   L+S          GK I    I +GL   NVV+ N+LIDMY K G  
Sbjct: 351 AAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLK-DNVVVCNALIDMYAKCGGF 409

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  M    ++SW ++I+ C  +G  + AL+ F+ M   G  P+  T   V+ AC
Sbjct: 410 NDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQAC 469

Query: 257 TKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAV 314
                +++G + F  ++ K G        S  +DL  +   L +++ + + +    D  +
Sbjct: 470 AHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGI 529

Query: 315 INVMIST---YGRYGFGE-VALELFQL 337
            + ++S    +G+   G+ V+ +LF+L
Sbjct: 530 WSALLSACKLHGKMEMGKYVSEQLFEL 556


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 288/551 (52%), Gaps = 11/551 (1%)

Query: 93   KSDNLDTALKVFDEIPEPD--VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
            K  ++  A  VF E+P P   +V+WN M+  YA    S  A     +M   GV P   +F
Sbjct: 485  KCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSF 544

Query: 151  SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
            + +LS+   +   + +   ++ SG    +  L  +LI M+G+   L  A  VF  M+  D
Sbjct: 545  TSVLSSCYCSQEAQVLRMCILESGYR--SACLETALISMHGRCRELEQARSVFNEMDHGD 602

Query: 211  IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            ++SW +++S    +   +   + F  M+  G  PD++T++  ++ C     L  GK + A
Sbjct: 603  VVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHA 662

Query: 271  LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
               ++G  ++  V +A ++++S C    +++  FE +   D    N+M + Y + G  + 
Sbjct: 663  CVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 331  ALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            A+ LF+ M  E ++P + T S  L+ S     V  G  FH++A +SG DS+  VA+ L++
Sbjct: 723  AVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVK 782

Query: 390  MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            +YAK G +D +  +F       +V  N I+  L Q+G + E + +F ++ +EG+ PD  T
Sbjct: 783  LYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 450  LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
            L +++ AC + G V++G   F  MKE +G+ P  EHYAC +DLL +AGQL  A  I   M
Sbjct: 843  LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902

Query: 510  PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW-EAI 568
            PF+    +W S+L    + GD +L E  A+R+++L   +   + +L+  Y   G+W +A 
Sbjct: 903  PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962

Query: 569  VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            V  KK++ +N +    G SW  I  +++ F AG+  H    +IY+VL  L   M   G  
Sbjct: 963  VDRKKMLDEN-VKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAG-- 1019

Query: 629  YLECDK-LDVE 638
              E DK LDVE
Sbjct: 1020 -YEADKGLDVE 1029



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 229/477 (48%), Gaps = 56/477 (11%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGH--LFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           A L   + L+  C+   S D AK  H H  +   G   H +LGN  +++Y R G+ ++  
Sbjct: 23  ADLQEYTALLQSCVD--SNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAH 80

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +F ++ ++N                               VVSW ++IS  A CG    
Sbjct: 81  AIFSKMEERN-------------------------------VVSWTALISANAQCGAFAR 109

Query: 131 ALEMFSKMQLQ-GVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGL---SLSNVVLG 183
           A  +F  M L+    P+ +T   +L+  +++     G+ IH  +   GL   S +  ++G
Sbjct: 110 AFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVG 169

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGELALDQFYSMRYSG 241
           N++I+MY K G L  A  VFL + E D++SW ++ +G +     +   AL  F  M    
Sbjct: 170 NAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAM-AGAYAQERRFYPDALRIFREMLLQP 228

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            +P+  T    + ACT LR+   G  + +L  +     + +  +A I+++ KC   E + 
Sbjct: 229 LAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAY 285

Query: 302 RLFEQL---DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +F+ +      D    N MIS     G    A+ +F+ +  E +RP   TL  +L+++ 
Sbjct: 286 SVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALA 345

Query: 359 IPPVEHGSQ--FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSW 415
              V+ G+   FH    +SG+  + V+ ++++ MYAK G   ++  +F ++  K D++SW
Sbjct: 346 ASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISW 405

Query: 416 NTIMMGLTQNGRA-AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           NT M+G +++ ++  + ++ F  +L  G+ P++++  A+L AC+    +D G  + S
Sbjct: 406 NT-MLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS 461



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 229/475 (48%), Gaps = 24/475 (5%)

Query: 93  KSDNLDTALKVFDEIP---EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           K  + + A  VF  +    E D+VSWN+MIS     G    A+ +F +++L+G+RP+  T
Sbjct: 277 KCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVT 336

Query: 150 FSILLSTVSSA----CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
              +L+ ++++       +  HG +  SG  L +VV+GN++I MY K G    A+ VF  
Sbjct: 337 LITILNALAASGVDFGAARGFHGRIWESGY-LRDVVIGNAIISMYAKCGFFSAAWAVFRR 395

Query: 206 ME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           +  + D+ISWN+++    +       ++ F+ M  +G  P++ +   ++NAC+    LD 
Sbjct: 396 IRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDF 455

Query: 265 GKQVFA--LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI--NVMIS 320
           G+++ +  L+ +  ++ +S+  +  + ++ KC  + ++  +F+++     +++  NVM+ 
Sbjct: 456 GRKIHSLILTRRRDYVESSVA-TMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLG 514

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAI-KSGFDS 379
            Y +    + A      ML+  + P   + + VLSS         +Q   M I +SG+ S
Sbjct: 515 AYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC---YCSQEAQVLRMCILESGYRS 571

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
            A + ++L+ M+ +   ++ +  +F ++D  D+VSW  ++    +N    E  ++F  + 
Sbjct: 572 -ACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQ 630

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
            EG+ PD+ TLA  L  C     +  G ++ + +  E G+         ++++    G  
Sbjct: 631 LEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVT-EIGLEADIAVENALLNMYSNCGDW 689

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
            +A+    TM  +   S W  +   SA Y    L +        +QL    P  L
Sbjct: 690 REALSFFETMKARDLVS-WNIM---SAAYAQAGLAKEAVLLFRQMQLEGVKPDKL 740



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 194/453 (42%), Gaps = 63/453 (13%)

Query: 22   IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
            +D CL+  +    K IH  + ++G  A   + N  L++YS  G   + L  F+ +  ++ 
Sbjct: 645  LDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 82   ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
            +SWNI                               M + YA  G +  A+ +F +MQL+
Sbjct: 705  VSWNI-------------------------------MSAAYAQAGLAKEAVLLFRQMQLE 733

Query: 142  GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            GV+P   TFS  L+    +     GK  H     SGL  S+V +   L+ +Y K G L  
Sbjct: 734  GVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLD-SDVSVATGLVKLYAKCGKLDE 792

Query: 199  AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            A  +F    +  ++  N++I      G+ E A+  F+ M+  G  PD  T+  +I+AC  
Sbjct: 793  AMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGH 852

Query: 259  LRNLDKGKQVFALSVKVGF-LSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVI- 315
               +++G   F L++K  F +S ++   A  +DL  +  +LE + ++  ++   D  ++ 
Sbjct: 853  AGMVEEGCSSF-LTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVW 911

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
              ++ T    G  E+     Q +L  D  P       VLS+I     +       +  K 
Sbjct: 912  TSLLGTCKLQGDAELGERCAQRILELD--PHNSAAHVVLSNIYCATGKWKDA--DVDRKK 967

Query: 376  GFDSNAV---------VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
              D N           +   + E  A   S   + EI+V LDK +L+        + + G
Sbjct: 968  MLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELL--------MRRAG 1019

Query: 427  RAAET-LDVFEELLEE--GLPPDRITLAAVLLA 456
              A+  LDV +EL E+  G   +RI +A  L+A
Sbjct: 1020 YEADKGLDVEDELKEKALGYHSERIAIAFGLIA 1052


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/545 (29%), Positives = 297/545 (54%), Gaps = 16/545 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K+ +L    +VFD + E  VV W  +I+ YA  GYSD A+E+F  M   G +P  +T S 
Sbjct: 201 KNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSS 260

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG---VLYYAFGVFLNM 206
           +LS  +   S   G+Q+H   +R GL  S+  +   L+DMY K      L+ A  VF  M
Sbjct: 261 MLSACTELGSFRLGQQLHSLALRLGLE-SDSCVSCGLVDMYAKSHNGQSLHNAREVFNRM 319

Query: 207 EELDIISWNSLISGCFNSGYGE-LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            + ++++W +L+SG    G  +   +  F  M   G  P+  T S ++ AC  L + D G
Sbjct: 320 PKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSG 379

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           +Q+    VK      ++V +A + ++++   +E++   F+QL   +    +  +   GR 
Sbjct: 380 RQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRS 439

Query: 326 G-FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
             + +  +E  +L +      + FT   ++S+   +  +  G + H++++K+GF S+  +
Sbjct: 440 NTYQDYQIERMELGI------STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAI 493

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +SL+ MY++ G +  + ++F +++  +++SW +++ GL ++G AA  L++F +++  G+
Sbjct: 494 GNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGV 553

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P+ +T  AVL AC++ G V +G   F  M++ +G++P  EHYAC++DLL ++G +  A+
Sbjct: 554 KPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDAL 613

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           D  + MP Q    +W+++L A   + ++ + E  A  ++ L+   P PY LL+  YA  G
Sbjct: 614 DFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAG 673

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            W+ + R++ +MR   + K  G SW+ + N I+ F AG+  H   ++IY  L  L  E++
Sbjct: 674 LWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIK 733

Query: 624 DEGCV 628
             G V
Sbjct: 734 VMGYV 738



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 208/402 (51%), Gaps = 25/402 (6%)

Query: 93  KSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           K   +  A  VFD +P    D+VSW +M S  +  G    AL +F +   +G+ P+ FT 
Sbjct: 96  KCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFT- 154

Query: 151 SILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
              L   + AC         G  + G + + G   ++V +G +LIDM+ K G L     V
Sbjct: 155 ---LCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRV 211

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F  + E  ++ W  LI+    SGY + A++ F  M  +G+ PD+YT+S +++ACT+L + 
Sbjct: 212 FDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSF 271

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR---LEDSVRLFEQLDRWDYAVINVMI 319
             G+Q+ +L++++G  S+S V    +D+++K +    L ++  +F ++ + +      ++
Sbjct: 272 RLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALL 331

Query: 320 STYGRYGFGE-VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
           S Y + G  +   + LF  ML E IRP   T S +L +   +   + G Q H+  +KS  
Sbjct: 332 SGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNL 391

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
               VV ++L+ MYA++GSI+ +   F +L ++++VS++  + G   +GR+    D   E
Sbjct: 392 ADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQDYQIE 448

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYG 478
            +E G+     T  +++ A    G + KG  + + ++K  +G
Sbjct: 449 RMELGIST--FTFGSLISAAASVGMLTKGQRLHALSLKAGFG 488



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 172/320 (53%), Gaps = 12/320 (3%)

Query: 163 GKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDIISWNSLIS 219
           G+ + G ++R+G  L ++ V+ NSL+ +Y K   +  A  VF  M     D++SW ++ S
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC--TKLRNLDKGKQVFALSVKVGF 277
               +G    AL  F      G  P+ +T+     AC  ++L +L  G  V  L  K+GF
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHL-AGGAVLGLVFKLGF 184

Query: 278 LSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
               + V  A ID+F+K   L    R+F+ L      V  ++I+ Y + G+ + A+ELF 
Sbjct: 185 WGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFL 244

Query: 337 LMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            ML    +P ++TLS +LS+   +     G Q HS+A++ G +S++ V+  L++MYAK+ 
Sbjct: 245 DMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSH 304

Query: 396 ---SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG-RAAETLDVFEELLEEGLPPDRITLA 451
              S+ ++ E+F ++ K ++++W  ++ G  Q G +  + + +F ++L EG+ P+ IT +
Sbjct: 305 NGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYS 364

Query: 452 AVLLACNYGGFVDKGMLVFS 471
           ++L AC   G  D G  + +
Sbjct: 365 SMLKACANLGDQDSGRQIHT 384



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 188/412 (45%), Gaps = 49/412 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD---DVLQLFDE 75
           S ++  C    SF   + +H    +LG  + + +    +D+Y++        +  ++F+ 
Sbjct: 259 SSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNR 318

Query: 76  IPQKNCISWNICLRGLLKSDNLDTAL-----KVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           +P+ N ++W   L G ++  + D  +     K+ +E   P+ ++++SM+   A+ G  D 
Sbjct: 319 MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDS 378

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
                                           G+QIH   ++S L+  NVV GN+L+ MY
Sbjct: 379 --------------------------------GRQIHTHCVKSNLADLNVV-GNALVSMY 405

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G +  A   F  + E +++S+    SG  + G G     Q Y +         +T  
Sbjct: 406 AESGSIEEARHAFDQLYEKNMVSF----SGNLD-GDGRSNTYQDYQIERMELGISTFTFG 460

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            +I+A   +  L KG+++ ALS+K GF S+  + ++ + ++S+C  L D+ ++F++++  
Sbjct: 461 SLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDH 520

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQF 368
           +      MIS   ++G+   ALELF  M+   ++P + T   VLS+     +  E    F
Sbjct: 521 NVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHF 580

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
             M    G        + ++++  ++G ++ + +   ++  + D + W T++
Sbjct: 581 RMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLL 632



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 38/231 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI    S       + +H    K GF +   +GN  + +YSR G   D  Q+FDE+   N
Sbjct: 462 LISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHN 521

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            ISW                                SMISG A  GY+  ALE+F  M  
Sbjct: 522 VISW-------------------------------TSMISGLAKHGYAARALELFHDMIA 550

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV+P+  T+  +LS  S A     GK+    M +    +  +     ++D+ G+ G++ 
Sbjct: 551 AGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVE 610

Query: 198 YAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSMRYSGYSP 244
            A      M  ++D + W +L+  C    N   GE+A +    +     +P
Sbjct: 611 DALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAP 661


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 305/610 (50%), Gaps = 41/610 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +     K +HG   KL  +    L N  +D+YS+ G                CI+ 
Sbjct: 302 CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCG----------------CIT- 344

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                          A  +F      +VVSWN+M+ G+++ G +    ++  +M   G  
Sbjct: 345 --------------NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 390

Query: 145 PSGFTFSILLSTVSSACHG------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
                 +IL + V    H       K++H   ++    + N ++ N+ +  Y K G L Y
Sbjct: 391 VKADEVTIL-NAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAKCGSLSY 448

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  +    + SWN+LI G   S    L+LD    M+ SG  PD +T+  +++AC+K
Sbjct: 449 AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK 508

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L++L  GK+V    ++     +  V  + + L+  C  L     LF+ ++       N +
Sbjct: 509 LKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTV 568

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGF 377
           I+ Y + GF + AL +F+ M+   I+    ++  V  +  + P +  G + H+ A+K   
Sbjct: 569 ITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLL 628

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           + +A +A SL++MYAK GSI  S+++F  L ++   SWN ++MG   +G A E + +FEE
Sbjct: 629 EDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEE 688

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           +   G  PD +T   VL ACN+ G + +G+     MK  +G+ P  +HYAC+ID+L +AG
Sbjct: 689 MQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAG 748

Query: 498 QLGKAIDITS-TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           QL KA+ + +  M  +    IW+S+L +  I+ ++++ E VA ++ +L+   P  Y LL+
Sbjct: 749 QLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLS 808

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
             YA  G+WE + +V++ M +  + K  GCSWI +  ++++F  GE    G ++I  +  
Sbjct: 809 NLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWS 868

Query: 617 LLTWEMEDEG 626
           +L  ++   G
Sbjct: 869 ILEMKISKMG 878



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 225/533 (42%), Gaps = 48/533 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C           +HG + K G     ++GN  +  Y   G   D LQLFD +    
Sbjct: 193 VIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM---- 248

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                      PE ++VSWNSMI  ++  G+S+ +  +  +M  
Sbjct: 249 ---------------------------PERNLVSWNSMIRVFSDNGFSEESFLLLGEMME 281

Query: 141 QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +    +       L TV   C        GK +HG  ++  L    +VL N+L+DMY K 
Sbjct: 282 ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLD-KELVLNNALMDMYSKC 340

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISI 251
           G +  A  +F      +++SWN+++ G    G      D    M   G     DE TI  
Sbjct: 341 GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 400

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            +  C     L   K++   S+K  F+ N +V +A +  ++KC  L  + R+F  +    
Sbjct: 401 AVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT 460

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS 370
               N +I  + +     ++L+    M    + P  FT+  +LS+   +  +  G + H 
Sbjct: 461 VNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHG 520

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             I++  + +  V  S++ +Y   G + +   +F  ++ + LVSWNT++ G  QNG    
Sbjct: 521 FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDR 580

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYAC- 488
            L VF +++  G+    I++  V  AC+    +  G    + A+K    ++  +   AC 
Sbjct: 581 ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACS 637

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +ID+  + G + ++  + + +  +   S W +++    I+G  K    + E M
Sbjct: 638 LIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHGLAKEAIKLFEEM 689



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 198/423 (46%), Gaps = 53/423 (12%)

Query: 52  LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD 111
           L  R + +Y+  G+ DD   +FD +  KN   WN  +    +++  D  L+ F       
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETF------- 174

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHG 168
                               +EM S   L    P  FT+  ++     +S    G  +HG
Sbjct: 175 --------------------IEMISTTDLL---PDHFTYPCVIKACAGMSDVGIGLAVHG 211

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            ++++GL + +V +GN+L+  YG  G +  A  +F  M E +++SWNS+I    ++G+ E
Sbjct: 212 LVVKTGL-VEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSE 270

Query: 229 ---LALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
              L L +       G + PD  T+  V+  C + R +  GK V   +VK+      ++ 
Sbjct: 271 ESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLN 330

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR--ED 342
           +A +D++SKC  + ++  +F+  +  +    N M+  +   G      ++ + ML   ED
Sbjct: 331 NALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 390

Query: 343 IRPTEFTLSCVLSSIPI-------PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           ++  E T   +L+++P+       P ++   + H  ++K  F  N +VA++ +  YAK G
Sbjct: 391 VKADEVT---ILNAVPVCFHESFLPSLK---ELHCYSLKQEFVYNELVANAFVASYAKCG 444

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S+  +  +F  +  + + SWN ++ G  Q+     +LD   ++   GL PD  T+ ++L 
Sbjct: 445 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504

Query: 456 ACN 458
           AC+
Sbjct: 505 ACS 507



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 14/312 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G++IH  +  S    ++ VL   +I MY   G    +  VF  +   ++  WN++IS   
Sbjct: 103 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 162

Query: 223 NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +   +  L+ F  M   +   PD +T   VI AC  + ++  G  V  L VK G + + 
Sbjct: 163 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 222

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A +  +     + D+++LF+ +   +    N MI  +   GF E +  L   M+ E
Sbjct: 223 FVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEE 282

Query: 342 D----IRPTEFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           +      P   TL  VL   P+   E     G   H  A+K   D   V+ ++LM+MY+K
Sbjct: 283 NGDGAFMPDVATLVTVL---PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK 339

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE--EGLPPDRITLA 451
            G I ++  IF   + +++VSWNT++ G +  G    T DV  ++L   E +  D +T+ 
Sbjct: 340 CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 399

Query: 452 AVLLACNYGGFV 463
             +  C +  F+
Sbjct: 400 NAVPVCFHESFL 411



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 149/353 (42%), Gaps = 58/353 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S + CS L+  C   KS    K +HG + +       ++    L LY   G    V  LF
Sbjct: 496 SFTVCS-LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 554

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
           D +  K+ +SWN  + G L++                               G+ D AL 
Sbjct: 555 DAMEDKSLVSWNTVITGYLQN-------------------------------GFPDRALG 583

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F +M L G++  G +   +    S   S   G++ H   ++  L   +  +  SLIDMY
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLE-DDAFIACSLIDMY 642

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  +  VF  ++E    SWN++I G    G  + A+  F  M+ +G++PD+ T  
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 702

Query: 251 IVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            V+ AC         LR LD+ K  F L        N    +  ID+  +  +L+ ++R+
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLK------PNLKHYACVIDMLGRAGQLDKALRV 756

Query: 304 F--EQLDRWDYAVINVMIST---YGRYGFGE-VALELFQLMLREDIRPTEFTL 350
              E  +  D  +   ++S+   +     GE VA +LF+L   E  +P  + L
Sbjct: 757 VAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL---EPEKPENYVL 806


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 174/589 (29%), Positives = 301/589 (51%), Gaps = 60/589 (10%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           KS+N+  A K+FDEIP+ +  +W  +ISG+A  G S+    +F +MQ +G  P+ +T S 
Sbjct: 336 KSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSS 395

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE- 208
           +L   S   +   GK +H  M+R+G+ + +VVLGNS++D+Y K  V  YA  +F  M E 
Sbjct: 396 VLKCCSLDNNLQLGKGVHAWMLRNGIDV-DVVLGNSILDLYLKCKVFEYAERLFELMNEG 454

Query: 209 ------------------------------LDIISWNSLISGCFNSGYGELALDQFYSMR 238
                                          D++SWN+++ G    GY   AL+Q Y M 
Sbjct: 455 DVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMV 514

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G      T SI +   + L +++ G+Q+  + +K GF S+  + S+ ++++ KC R++
Sbjct: 515 ECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMD 574

Query: 299 DS----------------VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE- 341
            +                 R+  +  +        M+S Y   G  E  L+ F+LM+RE 
Sbjct: 575 KASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVREL 634

Query: 342 ---DIRPTEFTLS-CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
              DIR     +S C  + I    +E G   H+   K G   +A V SSL++MY+K+GS+
Sbjct: 635 VVVDIRTVTTIISACANAGI----LEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSL 690

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D +  +F + ++ ++V W +++ G   +G+    + +FEE+L +G+ P+ +T   VL AC
Sbjct: 691 DDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNAC 750

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ G +++G   F  MK+ Y + PG EH   ++DL  +AG L K  +           S+
Sbjct: 751 SHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSV 810

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W+S L +  ++ +V++ + V+E ++ +    P  Y LL+   A   RW+   RV+ +M +
Sbjct: 811 WKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQ 870

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            G+ K  G SWI +K++I+TF  G+  H    +IY  L +L   +++ G
Sbjct: 871 RGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIG 919



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 206/421 (48%), Gaps = 28/421 (6%)

Query: 24  RCLSF-KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCI 82
           +C S   +    K +H  + + G +    LGN  LDLY +    +   +LF+ + + + +
Sbjct: 398 KCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVV 457

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
           SWNI +   L++ +++ +L +F  +P  DVVSWN+++ G   CGY  +ALE    M   G
Sbjct: 458 SWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECG 517

Query: 143 VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
              S  TFSI L   SS  H   G+Q+HG +++ G   S+  + +SL++MY K G +  A
Sbjct: 518 TEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFD-SDGFIRSSLVEMYCKCGRMDKA 576

Query: 200 FGVFLNMEELD-----------------IISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
             + L    LD                 I+SW S++SG   +G  E  L  F  M     
Sbjct: 577 -SIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELV 635

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302
             D  T++ +I+AC     L+ G+ V A   K+G   ++ V S+ ID++SK   L+D+  
Sbjct: 636 VVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWM 695

Query: 303 LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP- 361
           +F Q +  +  +   MIS Y  +G G  A+ LF+ ML + I P E T   VL++      
Sbjct: 696 VFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGL 755

Query: 362 VEHGSQFHSMAIKSGFDSNAVV--ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI 418
           +E G ++  M +K  +  N  V   +S++++Y + G +  +     K     L S W + 
Sbjct: 756 IEEGCRYFRM-MKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSF 814

Query: 419 M 419
           +
Sbjct: 815 L 815


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 278/506 (54%), Gaps = 13/506 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +++ A  VFD+  +  V  WNSMI GY + G    AL M+ +MQ +G  P  FTF  +L 
Sbjct: 54  DIEYARTVFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLK 113

Query: 156 TVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             S+     +G+ +H  ++++G  L +V   + L++MY   G L     VF  + + +++
Sbjct: 114 VCSAIDLLVYGQSVHNRIVKTGFEL-DVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 172

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +W SLI+G  N+   + AL  F  M   G  P+E T++  + A  + R++  GK V    
Sbjct: 173 AWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRL 232

Query: 273 VKVG---FLSNS----IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
            ++G   F +NS    I+ +A +D+++KC +L  +  LF+++ + +  V N MIS + +Y
Sbjct: 233 RQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQY 292

Query: 326 GFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G G  AL LF  M      P + T LS + +   +     G   H+  +K+ F     + 
Sbjct: 293 GRGAEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIG 352

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-L 443
           ++LM+MYAK+G  D++ +IF KL K+D+++W T++ GL   G+  E L+VF  + EE  +
Sbjct: 353 TALMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEV 412

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD+IT  AVL AC++ G V++G   F++M E YG+ P  EHY C+IDLL +AG   +A 
Sbjct: 413 APDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAE 472

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           ++   MP QP  +I  SIL    +YG+V L   V   +++L+  S   Y LL+  +A   
Sbjct: 473 ELLVKMPTQPNATILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKAC 532

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWI 589
            WE +   + +++   I K  G S++
Sbjct: 533 NWEEMKLARDILKHKKIGKTLGNSFV 558



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 193/400 (48%), Gaps = 21/400 (5%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYG--KLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           KQIH  MI++ + + N++  + LID     +LG + YA  VF   ++L +  WNS+I G 
Sbjct: 22  KQIHSLMIKTSV-VKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGY 80

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            N G    AL  +  M+  G+ PD +T   V+  C+ +  L  G+ V    VK GF  + 
Sbjct: 81  CNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDV 140

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
              S  ++++  C  L   +++FE + +W+      +I+ +      + AL LF+ M  E
Sbjct: 141 YTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENE 200

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS-GFDS-------NAVVASSLMEMYAK 393
            + P E T++  L++       H  +     ++  G D        N ++A+++M+MYAK
Sbjct: 201 GVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAK 260

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G + ++  +F K+ +R+LV WN+++   +Q GR AE L +F ++   G  P++ T  +V
Sbjct: 261 CGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSV 320

Query: 454 LLACNYGGFVDKGM----LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           + AC +  F   G      V  A   E+  +        ++D+  ++G    A+ I S +
Sbjct: 321 IRACTHLRFRSTGQSLHARVLKANFHEFVAIG-----TALMDMYAKSGDADTALKIFSKL 375

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
             +     W +++   AI G  K   NV  RM +    +P
Sbjct: 376 R-KKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAP 414



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 181/398 (45%), Gaps = 49/398 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +     + +++H  + K GF    Y  +  L++Y   G  +  L++F+ IP+ N ++W
Sbjct: 115 CSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAW 174

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
              + G + +D    AL++F +                               M+ +GV 
Sbjct: 175 TSLIAGFVNNDQPKEALRLFKD-------------------------------MENEGVE 203

Query: 145 PSGFTFSILLSTVSSACHGKQIH-GSMIRSGL-----------SLSNVVLGNSLIDMYGK 192
           P+  T +  L+  +     + IH G ++R  L           S  NV+L  +++DMY K
Sbjct: 204 PNEITMTTALAAAARC---RDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAK 260

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G L  A  +F  M + +++ WNS+IS     G G  AL  F  M  +G+ P++ T   V
Sbjct: 261 CGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSV 320

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I ACT LR    G+ + A  +K  F     + +A +D+++K    + ++++F +L + D 
Sbjct: 321 IRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDV 380

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQ-FH 369
                MIS     G G+ AL +F+ M  E ++ P + T   VL +   +  VE G + F 
Sbjct: 381 MAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFT 440

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           SM    G +        ++++ ++ G  + + E+ VK+
Sbjct: 441 SMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKM 478



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 16/273 (5%)

Query: 55  RCLDLYS----RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
           RC D+++    R+      L  F    + N I     +    K   L TA  +FD++P+ 
Sbjct: 218 RCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQR 277

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GK 164
           ++V WNSMIS ++  G    AL +F  M+L G  P+  TF   LS + +  H      G+
Sbjct: 278 NLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATF---LSVIRACTHLRFRSTGQ 334

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
            +H  ++++      V +G +L+DMY K G    A  +F  + + D+++W ++ISG    
Sbjct: 335 SLHARVLKANFH-EFVAIGTALMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQ 393

Query: 225 GYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSI 282
           G G+ AL+ F  M      +PD+ T   V+ AC+ L  +++G++ F   ++V G      
Sbjct: 394 GKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTME 453

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
                IDL S+    E++  L  ++     A I
Sbjct: 454 HYGCMIDLLSRAGHSEEAEELLVKMPTQPNATI 486



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C   +     +++H  + K  F+    +G   +D+Y++ G +D  L++F ++ +K+
Sbjct: 320 VIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADTALKIFSKLRKKD 379

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPE-----PDVVSWNSMISGYASCGYSDYALEMF 135
            ++W   + GL        AL VF  + E     PD +++ +++   +  G  +   + F
Sbjct: 380 VMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHF 439

Query: 136 -SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL--IDMYGK 192
            S M++ G+ P+   +  ++  +S A H ++    +++     +  +L + L   +MYG 
Sbjct: 440 TSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNATILSSILNGCEMYGN 499

Query: 193 LGV 195
           +G+
Sbjct: 500 VGL 502


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/535 (31%), Positives = 280/535 (52%), Gaps = 46/535 (8%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N D ALKVF  IP P+V  WN +I G         A+  + +M +   RP+ FT+  L  
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFK 140

Query: 156 TVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             S A     G+QIHG +++ G+  S+V + ++ I MY   G L  A  +F + E  D++
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIG-SDVHIKSAGIQMYASFGRLEDARKMFYSGES-DVV 198

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WN++I G    G  E A   F  M          + +++IN   K  NL          
Sbjct: 199 CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG----SWNVMINGLAKGGNLG--------- 245

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
                                     D+ +LF+++   D    + M+  Y   G  + AL
Sbjct: 246 --------------------------DARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           E+FQ M RE+ RP  F LS VL++   I  ++ G   H+   ++    +AV+ ++L++MY
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +D   E+F ++ +R++ +WN ++ GL  +GRA + L++F +L E  + P+ ITL 
Sbjct: 340 AKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLV 399

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            VL AC + GFVDKG+ +F  M+E YGV P  EHY C++DLL ++G   +A D+ ++MP 
Sbjct: 400 GVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM 459

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P  ++W ++L A  I+G+  L E V + +++L+  +   Y LL+  YA  GR++ + ++
Sbjct: 460 KPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKI 519

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +K+M+  GI  V G S + +   ++ F  G+  H   ++IY  L+++   ++  G
Sbjct: 520 RKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAG 574



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 34/282 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ--------- 71
           L   C   ++    + IHGH+ K G  +  ++ +  + +Y+ FG  +D  +         
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDV 197

Query: 72  ---------------------LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
                                LF ++P KN  SWN+ + GL K  NL  A K+FDE+ E 
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIH 167
           D +SW+SM+ GY S G    ALE+F +MQ +  RP  F  S +L   S + +   G+ +H
Sbjct: 258 DEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVH 317

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
             + R+ + L + VLG +L+DMY K G L   + VF  M+E +I +WN++I G    G  
Sbjct: 318 AYLKRNSIKL-DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRA 376

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           E AL+ F  ++     P+  T+  V+ AC     +DKG ++F
Sbjct: 377 EDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 161/395 (40%), Gaps = 97/395 (24%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS--RFGTSDDVLQLFDEIPQKNCISW 84
           S  S  +   +H  + + G     Y+    L  Y+   F   D  L++F  IP  N   W
Sbjct: 42  SITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIW 101

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           NI ++G L+++      K+F                          A+  + +M +   R
Sbjct: 102 NIVIKGCLENN------KLFK-------------------------AIYFYGRMVIDA-R 129

Query: 145 PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSL------------------------ 177
           P+ FT+  L    S A     G+QIHG +++ G+                          
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKM 189

Query: 178 -----SNVVLGNSLIDMYGKLGVLYYAFGVFLN--------------------------- 205
                S+VV  N++ID Y K GVL  A G+F                             
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249

Query: 206 ----MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
               M E D ISW+S++ G  ++G  + AL+ F  M+     P  + +S V+ AC+ +  
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +D+G+ V A   +     ++++ +A +D+++KC RL+    +FE++   +    N MI  
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
              +G  E ALELF  +    ++P   TL  VL++
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTA 404



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 192/425 (45%), Gaps = 46/425 (10%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK--LGVLYYAFGVFLNMEELDIIS 213
           +++S  +  Q+H  ++RSG    + V G +L+  Y         +A  VF ++   ++  
Sbjct: 42  SITSLQYLTQLHALVLRSGHFQDHYVSG-ALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN +I GC  +     A+  FY        P+++T   +  AC+  + + +G+Q+    V
Sbjct: 101 WNIVIKGCLENNKLFKAI-YFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G  S+  + SA I +++   RLED+ ++F   +  D    N MI  Y + G  E A  
Sbjct: 160 KHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKG 218

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           LF  M                      PV++   ++ M                +   AK
Sbjct: 219 LFAQM----------------------PVKNIGSWNVM----------------INGLAK 240

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G++  + ++F ++ +RD +SW++++ G    GR  E L++F+++  E   P R  L++V
Sbjct: 241 GGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSV 300

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC+  G +D+G  V + +K     +      A ++D+  + G+L    ++   M  + 
Sbjct: 301 LAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA-LLDMYAKCGRLDMGWEVFEEMK-ER 358

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVK 572
               W +++   AI+G  +    +  ++ + ++ P+ +    +  A A  G  +  +R+ 
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 573 KVMRK 577
           + MR+
Sbjct: 419 QTMRE 423



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +  + D  + +H +L +        LG   LD+Y++ G  D   ++F+E+ +
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKE 357

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +   +WN  + GL      + AL++F ++ E    P+ ++   +++  A  G+ D  L +
Sbjct: 358 REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRI 417

Query: 135 FSKM-QLQGVRP 145
           F  M +  GV P
Sbjct: 418 FQTMREFYGVDP 429



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 47/264 (17%), Positives = 109/264 (41%), Gaps = 44/264 (16%)

Query: 349 TLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT--GSIDSSTEIFVK 406
           T+  +  S  I  +++ +Q H++ ++SG   +  V+ +L++ YA     + D + ++F  
Sbjct: 33  TVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSS 92

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +   ++  WN ++ G  +N +  + +  +  ++ +   P++ T   +  AC+    V +G
Sbjct: 93  IPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEG 151

Query: 467 MLVFS------------------AMKEEYGVMP--------GEEHYAC---IIDLLCQAG 497
             +                     M   +G +         GE    C   +ID   + G
Sbjct: 152 RQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCG 211

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDV----KLTENVAERMMDLQLPSPLPYS 553
            L  A  + + MP +     W  ++   A  G++    KL + ++ER         + +S
Sbjct: 212 VLEAAKGLFAQMPVK-NIGSWNVMINGLAKGGNLGDARKLFDEMSER-------DEISWS 263

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRK 577
            +   Y   GR++  + + + M++
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQR 287


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 159/522 (30%), Positives = 289/522 (55%), Gaps = 13/522 (2%)

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-----HGKQIHGSMIRS 173
           ++ ++  G    AL  F +M   G RP   TFS++L+ ++         G++IH     S
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           GL L NVV+G ++I MYGK G L  A   F  ++  + ++WN++++     G    AL+ 
Sbjct: 61  GL-LPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 234 FYSM--RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATID 289
           F  M  R     PD+++ SI I AC+ L +L++G+++  +  + G     + +V +A ++
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLN 179

Query: 290 LFSKCNRLEDSVRLFEQLDR-WDYAVINVMISTYGRYGFGEVALELFQLML-REDIRPTE 347
           ++SKC  LE++ ++F+ +    D    N MI+ Y ++G G+ AL+L++ M    D+ P +
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQ 239

Query: 348 FTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            T   V+     +  ++ G   H+    + FD+N +V+++L+ MY K G +D + ++F  
Sbjct: 240 GTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +  +D +SWNTI+     +G + + L +++E+  +G+ P  +T   +L AC++GG V  G
Sbjct: 300 MKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADG 359

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
           +  F  M++++ + P   H+ CIIDLL + G+L +A  +  +MP Q     W S+L A  
Sbjct: 360 LDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACK 419

Query: 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586
            +GD+K     A++++D    +   Y LL+  YA  GRW+ + +++K+M   G+ K  G 
Sbjct: 420 THGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGK 479

Query: 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           SWI I + ++ F +G+  H  G++IY+ L  +  EM+  G V
Sbjct: 480 SWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYV 521



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 161/334 (48%), Gaps = 39/334 (11%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            D  + IH +    G   +  +G   + +Y + G  DD    F+E+  KN ++W      
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTW------ 100

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM--QLQGVRPSGF 148
                                    N+M++ Y   G    ALE+F +M  + +  RP  F
Sbjct: 101 -------------------------NAMMTNYKLDGRDREALELFREMCERSRSARPDKF 135

Query: 149 TFSILL---STVSSACHGKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           +FSI +   S +     G++IH  + R G  L  +VV+G +L++MY K G L  A  VF 
Sbjct: 136 SFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFD 195

Query: 205 NM-EELDIISWNSLISGCFNSGYGELALDQFYSMR-YSGYSPDEYTISIVINACTKLRNL 262
           ++  + D + WN++I+     G G+ ALD + SM   +  +P + T   VI+ C +L  L
Sbjct: 196 SIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSAL 255

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322
            +G+ + A      F +N +V +A + ++ KC  L++++ +F  +   D    N +IS+Y
Sbjct: 256 KQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSY 315

Query: 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
             +G  + AL L+Q M  + ++PTE T   +LS+
Sbjct: 316 AYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSA 349



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 110/265 (41%), Gaps = 55/265 (20%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +ID C    +    + IH  +    F+A+  + N  + +Y + G                
Sbjct: 245 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGC--------------- 289

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           LD AL VF  +   D +SWN++IS YA  G+SD AL ++ +M L
Sbjct: 290 ----------------LDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDL 333

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL-----------SNVVLGNSLIDM 189
           QGV+P+  TF  LLS  S        HG ++  GL              +V     +ID+
Sbjct: 334 QGVKPTEVTFVGLLSACS--------HGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDL 385

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSG---YGELALDQFYSMRYSGYSPD 245
            G+ G L  A  V  +M  + + + W SL+  C   G    G  A DQ    R    S  
Sbjct: 386 LGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVD-RVPWTSGG 444

Query: 246 EYTISIVINACTKLRNLDKGKQVFA 270
              +S +  A  + ++++K +++ A
Sbjct: 445 YVLLSNIYAAAGRWKDVEKIRKIMA 469


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 179/644 (27%), Positives = 309/644 (47%), Gaps = 101/644 (15%)

Query: 16  SYCSQLIDRCLSFKSFDFA-KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +Y   L+ +  + +  +F  K IH H+ K+GF++  Y+ N  +++Y+  G          
Sbjct: 141 NYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCG---------- 190

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                N+  A K+FDE P  D VSWNS+++GY   G  + A  +
Sbjct: 191 ---------------------NMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLI 229

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F +M  +                                     N+V  NS+I + GK+G
Sbjct: 230 FDQMPQR-------------------------------------NIVASNSMIVLLGKMG 252

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A+ +F  M+E D++SW++LISG   +G  E AL  F  M  +G   DE  +  V++
Sbjct: 253 QVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 312

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L  +  GK +  L +++G  S   + +A I ++S    + D+ +LF      D   
Sbjct: 313 ACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQIS 372

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDI------------------------------- 343
            N MIS   + G  E A  LF +M  +DI                               
Sbjct: 373 WNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQI 432

Query: 344 RPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           RP E  L  V+S+   +  ++ G   H+   K+G   N ++ ++L++MY K G ++++ E
Sbjct: 433 RPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALE 492

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F  ++++ + SWN +++GL  NG    +LD+F E+   G+ P+ IT   VL AC + G 
Sbjct: 493 VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 552

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           VD+G   F++M E++G+ P  +HY C++DLL +AG L +A  +  +MP  P  + W ++L
Sbjct: 553 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 612

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A   +GD ++ E V  ++++LQ      + LL+  +A +G WE ++ V+ +M++ G+ K
Sbjct: 613 GACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK 672

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             GCS I     ++ F AG+  H    K+  +L  +   ++ EG
Sbjct: 673 TPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEG 716



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 40/275 (14%)

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L Y+  +F  +E  +   WN+++     S   E AL  +  M  +   PD YT  +V+ A
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 256 CTKLRNLD-KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           C  +R L+  GK++    +KVGF S+  V +  I++++ C  + D+ +LF++    D   
Sbjct: 151 CA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374
            N +++ Y + G  E A  +F  M + +I                               
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNI------------------------------- 238

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
                  V ++S++ +  K G +  + ++F ++D++D+VSW+ ++ G  QNG   E L +
Sbjct: 239 -------VASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVM 291

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           F E+   G+  D + + +VL AC +   V  G ++
Sbjct: 292 FIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMI 326



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSI--DSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           S  I +GF S+   AS L++    +  I  D S +IF +++  +   WNT+M    Q+  
Sbjct: 62  SQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNS 121

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLAC-----NYGGFVDKGMLVFSAMKEEYGVMPG 482
           A + L +++ +++  + PD  T   V+ AC      +GG      ++      +  V   
Sbjct: 122 AEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQ-- 179

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
                 +I++    G +  A  +    P     S W SIL      GDV+  + + ++M
Sbjct: 180 ----NTLINMYAVCGNMRDARKLFDESPVLDSVS-WNSILAGYVKKGDVEEAKLIFDQM 233


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/583 (28%), Positives = 291/583 (49%), Gaps = 66/583 (11%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           ++F   + IH  + + GF +  ++GN  +D+Y++                        C+
Sbjct: 263 RAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTK------------------------CM 298

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           +       +D A+KVFD +P    VSWN +I+G+   G    ALE+ + M+  G  P+  
Sbjct: 299 Q-------MDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEV 351

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           T+S +L++   A           R  LS                      A  +F  +  
Sbjct: 352 TYSNMLASCIKA-----------RDVLS----------------------ARAMFDKISR 378

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             + +WN+L+SG       +  ++ F  M++    PD  T+++++++C++L  LD G QV
Sbjct: 379 PSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQV 438

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            + SV+    ++  V S  +D++SKC ++  +  +F ++   D    N MIS    +   
Sbjct: 439 HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLN 498

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E A + F+ M    + PTE + + +++S   +  V  G Q H+  +K G+D N  V S+L
Sbjct: 499 EEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSAL 558

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G++D +   F  +  +++V+WN ++ G  QNG   + +D+FE +L     PD 
Sbjct: 559 IDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDG 618

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T  AVL  C++ G VD+ +  F++M+  YG+ P  EHY C+ID L +AG+L +   +  
Sbjct: 619 VTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALID 678

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +    +WE +L A A++ + +L E  A+ +  L   +P PY LL+  YA  GR   
Sbjct: 679 NMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGD 738

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN-AGELQHHGGQ 609
              V+ +M   G+ K  G SWI  K+ ++ F  A +LQ  GG+
Sbjct: 739 ASGVRALMSSRGVVKGRGYSWIDHKDGVHAFMVADDLQTDGGE 781



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 247/504 (49%), Gaps = 58/504 (11%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           +   G  A T+L NR ++LYS  G   D L+ F  +P+ N  S+N  L    ++ +LD A
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TV 157
             + DE+P+ +VVSWN++I+  A    +  ALE++  M  +G+ P+ FT + +LS    V
Sbjct: 94  RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           ++   G++ HG  ++ GL   N+ + N+L+ MY K G +  A  +F  M   + +S+ ++
Sbjct: 154 AALDDGRRCHGLAVKVGLD-ENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAM 212

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--------LRNLDKGKQVF 269
           + G   +G  + AL  F  M  SG   D   +S V+ +C +        +R    G+ + 
Sbjct: 213 MGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIH 272

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           AL V+ GF S+  V ++ ID+++KC +++++V++F+ L        N++I+ +G+ G   
Sbjct: 273 ALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYA 332

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            ALE+  LM      P E T S +L+S                                 
Sbjct: 333 KALEVLNLMEESGSEPNEVTYSNMLASC-------------------------------- 360

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
              K   + S+  +F K+ +  + +WNT++ G  Q     +T+++F  +  + + PDR T
Sbjct: 361 --IKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTT 418

Query: 450 LAAVLLACNYGGFVDKGMLVFSA-----MKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           LA +L +C+  G +D G  V SA     +  +  V  G      ++D+  + GQ+G A  
Sbjct: 419 LAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASG------LVDMYSKCGQIGIARI 472

Query: 505 ITSTMPFQPGCSIWESILRASAIY 528
           I + M  +     W S++   AI+
Sbjct: 473 IFNRMT-ERDVVCWNSMISGLAIH 495



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 151/351 (43%), Gaps = 41/351 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C      D    +H    +   +   ++ +  +D+YS+ G       +F+ + +++
Sbjct: 422 ILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERD 481

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN                                MISG A    ++ A + F +M+ 
Sbjct: 482 VVCWNS-------------------------------MISGLAIHSLNEEAFDFFKQMRG 510

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  +++ ++++   +SS   G+QIH  +++ G    NV +G++LIDMY K G + 
Sbjct: 511 NGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYD-QNVYVGSALIDMYAKCGNMD 569

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  M   +I++WN +I G   +G+GE A+D F  M  +   PD  T   V+  C+
Sbjct: 570 DARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCS 629

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI- 315
               +D+    F ++    G    +   +  ID   +  RL +   L + +   D  ++ 
Sbjct: 630 HSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVW 689

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSCVLSSIPIPPVEHG 365
            V+++    +   E+     + + R D + P+ + L   LS+I      HG
Sbjct: 690 EVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVL---LSNIYASLGRHG 737



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 55/244 (22%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY S +I+ C    S    + IH  + K G++ + Y+G+  +D+Y++ G  DD    FD 
Sbjct: 519 SYAS-MINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDC 577

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +  KN ++W                               N MI GYA  G+ + A+++F
Sbjct: 578 MVTKNIVAW-------------------------------NEMIHGYAQNGFGEKAVDLF 606

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLG-----------N 184
             M     RP G TF  +L+  S        H  ++   ++  N +              
Sbjct: 607 EYMLTTEQRPDGVTFIAVLTGCS--------HSGLVDEAIAFFNSMESTYGITPLAEHYT 658

Query: 185 SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSMRYS 240
            LID  G+ G L     +  NM  + D I W  L++ C    N+  GE A    + +   
Sbjct: 659 CLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPK 718

Query: 241 GYSP 244
             SP
Sbjct: 719 NPSP 722


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 179/606 (29%), Positives = 308/606 (50%), Gaps = 48/606 (7%)

Query: 34   AKTIHGHLFKLGFNAHTY-LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             + +H H+ + G N +   +GN  +++Y++ G   D                        
Sbjct: 878  GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD------------------------ 913

Query: 93   KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                   A  VF+ + E D VSWNS+ISG      S+ A E F +M+  G  PS FT   
Sbjct: 914  -------ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFT--- 963

Query: 153  LLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            L+ST+SS         G+QIH   ++ GL  ++V + N+L+ +Y + G       VF  M
Sbjct: 964  LISTLSSCASLGWIMLGEQIHCDGLKLGLD-TDVSVSNALLALYAETGCFTECLKVFSLM 1022

Query: 207  EELDIISWNSLISGCFNSGYG-ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
             E D +SWNS+I    +S      A+  F  M   G+     T   +++A + L   +  
Sbjct: 1023 PEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVS 1082

Query: 266  KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGR 324
             Q+ AL +K     ++ + +A +  + KC  + +  ++F ++ +  D    N MIS Y  
Sbjct: 1083 HQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIH 1142

Query: 325  YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                  A++L   M+++  R   FT + VLS+   +  +E G + H+  I++  +S+ VV
Sbjct: 1143 NELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVV 1202

Query: 384  ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
             S+L++MY+K G ID ++  F  +  R++ SWN+++ G  ++G   + L +F  ++ +G 
Sbjct: 1203 GSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ 1262

Query: 444  PPDRIT-LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
            PPD +  L  VL AC++ GFV++G   F +M E Y + P  EH++C++DLL +AG+L + 
Sbjct: 1263 PPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEV 1322

Query: 503  IDITSTMPFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
             D  ++MP +P   IW ++L A   A   + +L    AE +++L+  + + Y LL   YA
Sbjct: 1323 GDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYA 1382

Query: 561  MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
               +WE + + +  M++  + K  GCSW+ +K+ ++ F AG+  H     IY  LR L  
Sbjct: 1383 SGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNR 1442

Query: 621  EMEDEG 626
            +M D G
Sbjct: 1443 KMRDAG 1448



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 142/517 (27%), Positives = 249/517 (48%), Gaps = 47/517 (9%)

Query: 43   KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
            K GF    Y+G+  +  ++RFG +DD   +F+++  +N +S N  + GL+K    + A K
Sbjct: 783  KSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAK 842

Query: 103  VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
            VF E+   D+V  NS    Y         L  FS+            FS+L         
Sbjct: 843  VFHEM--KDLVGINS--DSYV------VLLSAFSE------------FSVLEEGRRK--- 877

Query: 163  GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            G+++H  +IR+GL+ + V +GN L++MY K G +  A  VF  M E D +SWNSLISG  
Sbjct: 878  GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 937

Query: 223  NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             +   E A + F  MR +G  P  +T+   +++C  L  +  G+Q+    +K+G  ++  
Sbjct: 938  QNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 997

Query: 283  VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV----ALELFQLM 338
            V +A + L+++     + +++F  +  +D    N +I   G     E     A++ F  M
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVI---GALSDSEASVSQAVKYFLEM 1054

Query: 339  LRED---IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            +R      R T   +   +SS+ +  V H  Q H++ +K     +  + ++L+  Y K G
Sbjct: 1055 MRGGWGLSRVTFINILSAVSSLSLHEVSH--QIHALVLKYCLSDDTAIGNALLSCYGKCG 1112

Query: 396  SIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
             ++   +IF ++ + RD VSWN+++ G   N    + +D+   ++++G   D  T A VL
Sbjct: 1113 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVL 1172

Query: 455  LACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
             AC     +++GM V +       E  V+ G    + ++D+  + G++  A      MP 
Sbjct: 1173 SACASVATLERGMEVHACGIRACMESDVVVG----SALVDMYSKCGRIDYASRFFELMPL 1228

Query: 512  QPGCSIWESILRASAIYGDVKLTENVAERMM-DLQLP 547
            +   S W S++   A +G  +    +  RMM D Q P
Sbjct: 1229 RNVYS-WNSMISGYARHGHGEKALKLFTRMMLDGQPP 1264



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 207/453 (45%), Gaps = 61/453 (13%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +H    K GF  + +L N  +++Y R G      +LFDE+  +N ++W  CL     
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTW-ACL----- 616

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                    ISGY   G  D A   F  M   G  P+ + F   
Sbjct: 617 -------------------------ISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSA 651

Query: 154 LSTVS----SACH-GKQIHG--SMIRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVFLN 205
           L        S C  G QIHG  S  R G   S+VV+ N LI MYG  L     A  VF  
Sbjct: 652 LRACQESGPSGCKLGVQIHGLISKTRYG---SDVVVCNVLISMYGSCLDSANDARSVFDR 708

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG----YSPDEYTI-SIVINACTKLR 260
           +   + ISWNS+IS     G    A D F SM+  G    + P+EYT  S++  AC+   
Sbjct: 709 IGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACS--- 765

Query: 261 NLDKG----KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           ++D G    +Q+ A   K GFL +  V SA +  F++    +D+  +FEQ+   +   +N
Sbjct: 766 SVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 825

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-----EHGSQFHSM 371
            ++    +   GE A ++F  M ++ +     +   +LS+     V       G + H+ 
Sbjct: 826 GLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAH 884

Query: 372 AIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            I++G + N V + + L+ MYAK+G+I  +  +F  + ++D VSWN+++ GL QN  + +
Sbjct: 885 VIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSED 944

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
             + F  +   G  P   TL + L +C   G++
Sbjct: 945 AAESFLRMRRTGSMPSNFTLISTLSSCASLGWI 977



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 16/307 (5%)

Query: 146 SGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           S  TF  L++    +C     +++H   I+ G  + N+ L N+LI++Y ++G L  A  +
Sbjct: 543 SSETFESLINRYQGSCCSEEARELHLQSIKYGF-VGNLFLSNTLINIYVRIGDLGSAQKL 601

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--LR 260
           F  M   ++++W  LISG   +G  + A  +F  M  +G+ P+ Y     + AC +    
Sbjct: 602 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPS 661

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAVINVMI 319
               G Q+  L  K  + S+ +V +  I ++  C +   D+  +F+++   +    N +I
Sbjct: 662 GCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSII 721

Query: 320 STYGRYGFGEVALELFQLMLREDI----RPTEFTLSCVLSSIPIPPVEHG----SQFHSM 371
           S Y R G    A +LF  M +E +    +P E+T   ++++     V+ G     Q  + 
Sbjct: 722 SVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITA-ACSSVDFGLCVLEQMLAR 780

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             KSGF  +  V S+L+  +A+ G  D +  IF ++  R++VS N +M+GL +  +    
Sbjct: 781 VEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAA 840

Query: 432 LDVFEEL 438
             VF E+
Sbjct: 841 AKVFHEM 847



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%)

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
           E   + H  +IK GF  N  ++++L+ +Y + G + S+ ++F ++  R+LV+W  ++ G 
Sbjct: 561 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           TQNG+  E    F +++  G  P+     + L AC   G
Sbjct: 621 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 659



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 42/211 (19%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + ++  C S  + +    +H    +    +   +G+  +D+YS+ G  D   + F+ +P 
Sbjct: 1169 ATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPL 1228

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +N  SWN                               SMISGYA  G+ + AL++F++M
Sbjct: 1229 RNVYSWN-------------------------------SMISGYARHGHGEKALKLFTRM 1257

Query: 139  QLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             L G  P     + LL  +S+  H      G +   SM         V   + ++D+ G+
Sbjct: 1258 MLDGQPPD--HVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGR 1315

Query: 193  LGVLYYAFGVFLNMEEL--DIISWNSLISGC 221
             G L    G F+N   +  +++ W +++  C
Sbjct: 1316 AGKL-DEVGDFINSMPMKPNVLIWRTVLGAC 1345


>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 170/593 (28%), Positives = 293/593 (49%), Gaps = 41/593 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    + GF    ++G+  ++LY+R G++                            
Sbjct: 117 EQVHSLAVRAGFVGDAWVGSCLVELYARCGSTR--------------------------- 149

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                A  V   +  PDVV++ S++S     G    A E   +M   GV P+  T + +L
Sbjct: 150 ----AAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSIL 205

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G QIHG MI++     +V   ++L+D Y + G    A  VF N++  ++++W
Sbjct: 206 AACCPLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTW 265

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALSV 273
            +++      G  E AL  F  M   G  SP+E+  SI + AC    ++  G Q+ +L++
Sbjct: 266 CTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGAC---ESIALGSQLHSLAI 322

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G  S+  V +A + ++ +   ++    +F  ++  D       IS Y + G GE A+ 
Sbjct: 323 KHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIA 382

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           L   M  + + P ++  S VLSS   +  ++ G QFH +A+K G D      ++L+ MY+
Sbjct: 383 LLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYS 442

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G I  +   F  +D RD+ SWN+++ G  Q+G     L  F E+   G  P+  TL  
Sbjct: 443 KCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLG 502

Query: 453 VLLACNYGGFVDKGMLVF-SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           VL ACN+ G VD+G+  F SAM   YG      HYAC++D+L ++G+   A+ +   MPF
Sbjct: 503 VLAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPF 562

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +PG  +W+++L +  ++G+++     AE++++L       Y L++  +AM G W     V
Sbjct: 563 EPGVLVWKTLLASCRLHGNLETGRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRDADMV 622

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           ++ M + G+ K  G SW+ ++N ++TF A ++ H     IY +L    WE+ D
Sbjct: 623 RRRMDEAGVRKEAGRSWVEVRNEVHTFVAQDVSHPDSPSIYRML----WELSD 671



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 220/453 (48%), Gaps = 15/453 (3%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L GL+K+  +  AL +FD +P  +VV+W S +SG    G  + A EMF+ M   GV  + 
Sbjct: 36  LDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALND 95

Query: 148 FTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           F  +  L+  ++A       G+Q+H   +R+G  + +  +G+ L+++Y + G    A  V
Sbjct: 96  FACNAALAACAAAGPGALRTGEQVHSLAVRAGF-VGDAWVGSCLVELYARCGSTRAAEAV 154

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
              ME  D++++ SL+S    SG   +A +    M   G  P+E+T++ ++ AC  L   
Sbjct: 155 LARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLV-- 212

Query: 263 DKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
             G Q+    +K    S S+  S+T +D +S+    + +  +F+ L   +      M+  
Sbjct: 213 -LGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQL 271

Query: 322 YGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN 380
           + R G  E AL+LF  M+ E  + P EF  S  L +     +  GSQ HS+AIK G  S+
Sbjct: 272 HIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGA--CESIALGSQLHSLAIKHGLASH 329

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V+++L+ MY + G +     +F  ++  D+VSW   +    QNG   + + +   +  
Sbjct: 330 LRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHS 389

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           +GL P+    ++VL +C     +D+G   F  +  + G          +I++  + GQ+ 
Sbjct: 390 QGLTPNDYAFSSVLSSCADLALLDQGRQ-FHCLALKLGCDVKTCTGNALINMYSKCGQIV 448

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            A      M  +   S W S++   A +G+V +
Sbjct: 449 PARLAFDIMDHRDVTS-WNSLIHGHAQHGEVDM 480



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 143/285 (50%), Gaps = 6/285 (2%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           + VV     +D   K G +  A  +F  M   ++++W S +SG   +G  E A + F  M
Sbjct: 27  AEVVRDCKRLDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADM 86

Query: 238 RYSGYSPDEYTISIVINACTKLRNLD--KGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
             SG + +++  +  + AC          G+QV +L+V+ GF+ ++ V S  ++L+++C 
Sbjct: 87  VESGVALNDFACNAALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCG 146

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
               +  +  +++  D      ++S   R G   +A E    M+   + P E T++ +L+
Sbjct: 147 STRAAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILA 206

Query: 356 SIPIPPVEHGSQFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +    P+  G Q H   IK+ GF  +   +S+L++ Y++ G  D +  +F  L  +++V+
Sbjct: 207 A--CCPLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVT 264

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACN 458
           W T+M    ++GR  + L +F+E++ EG + P+    +  L AC 
Sbjct: 265 WCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGACE 309



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 37/284 (13%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           +S      +H    K G  +H  + N  L +Y R G    +  +F               
Sbjct: 309 ESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMF--------------- 353

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           RG                I +PD+VSW + IS Y   G+ + A+ + S+M  QG+ P+ +
Sbjct: 354 RG----------------IEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDY 397

Query: 149 TFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            FS +LS+ +       G+Q H   ++ G  +     GN+LI+MY K G +  A   F  
Sbjct: 398 AFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCT-GNALINMYSKCGQIVPARLAFDI 456

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M+  D+ SWNSLI G    G  ++ L  F  M  +G  P+E T+  V+ AC     +D+G
Sbjct: 457 MDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEG 516

Query: 266 KQVF--ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              F  A++   G        +  +D+  +  R +D++ L E++
Sbjct: 517 VAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEM 560



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 39/227 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      D  +  H    KLG +  T  GN  +++YS+ G        FD +  
Sbjct: 400 SSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDH 459

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++  SWN  + G  +   +D  LK F E+     EP+  +   +++     G  D  +  
Sbjct: 460 RDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAF 519

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F +  + G+      +   L+    AC                        ++DM G+ G
Sbjct: 520 F-RSAMAGL------YGTFLTPPHYAC------------------------MVDMLGRSG 548

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSG---YGELALDQFYSM 237
               A  +   M  E  ++ W +L++ C   G    G LA ++   +
Sbjct: 549 RFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLAAEKLVEL 595


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 166/614 (27%), Positives = 311/614 (50%), Gaps = 45/614 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C   ++ +  + +H HL   GF     L    L +Y++ G+ DD          
Sbjct: 34  TSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDD---------- 83

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A +VF+ +   D+ +W+S+I+ YA  G  + A+ ++ +M
Sbjct: 84  ---------------------AKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRM 122

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +GV P+  TF+  L   ++V+    G+ IH  ++ S +   +V L +SL++MY K   
Sbjct: 123 IAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDV-LQDSLLNMYLKCDE 181

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVIN 254
           +  A  VF  M+  ++ S+ ++IS    +G    AL+ F  M +     P+ YT + ++ 
Sbjct: 182 MVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILG 241

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A   L NL+KG++V       GF +N +V +A + ++ KC    ++ ++F+ +   +   
Sbjct: 242 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 301

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAI 373
              MI+ Y ++G  + AL LF+ M   D+ P+  + S  L++  +   ++ G + H   +
Sbjct: 302 WTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVV 358

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++   S  +  +SL+ MYA+ GS+D +  +F ++  RD  S N ++   TQ+GR  + L 
Sbjct: 359 EANLASPQM-ETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALR 417

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           ++ ++ +EG+P D IT  +VL+AC++   V        ++  ++GV+P  EHY C++D+L
Sbjct: 418 IYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVL 477

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            ++G+LG A ++  TMP+Q     W ++L     +GD+   E  A ++ +L     LPY 
Sbjct: 478 GRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYV 537

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAG----ELQHHGGQ 609
            L+  YA   R++   RV+K M + G+ +    S+I I N ++ F +G    + + H G+
Sbjct: 538 FLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGR 597

Query: 610 KIYLVLRLLTWEME 623
            +  V  LL   +E
Sbjct: 598 TMERVRSLLVELLE 611



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 212/436 (48%), Gaps = 12/436 (2%)

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSG 174
           MI+     G    ALE++ +M+ +G+    F  + L++    + +   G+++H  +I +G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
              +++ L  +L+ MY K G L  A  VF  ME  D+ +W+S+I+    +G GE+A+  +
Sbjct: 61  FR-TDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLY 119

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M   G  P+  T +  +  C  +  L  G+ +    +      + ++  + ++++ KC
Sbjct: 120 RRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKC 179

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCV 353
           + + ++ ++FE +   +      MIS Y + G    ALELF  M + E I P  +T + +
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 354 LSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           L ++  +  +E G + H      GFD+N VV ++L+ MY K GS   + ++F  +  R++
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           +SW +++    Q+G   E L++F+ +    + P  ++ ++ L AC   G +D+G  +   
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHR 356

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           + E     P  E    ++ +  + G L  A  + + M  +   S   +++ A   +G  K
Sbjct: 357 VVEANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTRDAFSC-NAMIAAFTQHGRKK 413

Query: 533 LTENVAERMMDLQLPS 548
               +  +M    +P+
Sbjct: 414 QALRIYRKMEQEGIPA 429



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 181/392 (46%), Gaps = 32/392 (8%)

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +I+ C   G    AL+ +  M   G   D++ ++ ++ ACTKL+ L++G+++    +  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F ++  + +A + +++KC  L+D+ R+FE ++  D    + +I+ Y R G GE+A+ L++
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M+ E + P   T +C L     +  +  G   H   + S    + V+  SL+ MY K  
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVL 454
            +  + ++F  +  R++ S+  ++    Q G  AE L++F  + + E + P+  T A +L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 455 LACNYGGFVDKG---------------MLVFSAMKEEYGVM--PGEEH------------ 485
            A    G ++KG               ++V +A+   YG    P E              
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 486 -YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
            +  +I    Q G   +A+++   M  +P    + S L A A+ G +     +  R+++ 
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEA 360

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
            L SP   + L   YA  G  +   RV   M+
Sbjct: 361 NLASPQMETSLLSMYARCGSLDDARRVFNRMK 392


>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/593 (28%), Positives = 293/593 (49%), Gaps = 41/593 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    + GF    ++G+  ++LY+R G++                            
Sbjct: 117 EQVHSLAVRAGFVGDAWVGSCLVELYARCGSTR--------------------------- 149

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                A  V   +  PDVV++ S++S     G    A E   +M   GV P+  T + +L
Sbjct: 150 ----AAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSIL 205

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G QIHG MI++     +V   ++L+D Y + G    A  VF N++  ++++W
Sbjct: 206 AACCPLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTW 265

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGY-SPDEYTISIVINACTKLRNLDKGKQVFALSV 273
            +++      G  E AL  F  M   G  SP+E+  SI + AC    ++  G Q+ +L++
Sbjct: 266 CTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGAC---ESIALGSQLHSLAI 322

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G  S+  V +A + ++ +   ++    +F  ++  D       IS Y + G GE A+ 
Sbjct: 323 KHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIA 382

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           L   M  + + P ++  S VLSS   +  ++ G QFH +A+K G D      ++L+ MY+
Sbjct: 383 LLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYS 442

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G I  +   F  +D RD+ SWN+++ G  Q+G     L  F E+   G  P+  TL  
Sbjct: 443 KCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLG 502

Query: 453 VLLACNYGGFVDKGMLVF-SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           VL ACN+ G VD+G+  F SAM   YG      HYAC++D+L ++G+   A+ +   MPF
Sbjct: 503 VLAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPF 562

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +PG  +W+++L +  ++G+++     AE++++L       Y L++  +AM G W     V
Sbjct: 563 EPGVLVWKTLLASCRLHGNLETGRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRDADMV 622

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           ++ M + G+ K  G SW+ ++N ++TF A ++ H     IY +L    WE+ D
Sbjct: 623 RRRMDEAGVRKEAGRSWVEVRNEVHTFVAQDVSHPDSPSIYRML----WELSD 671



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 220/453 (48%), Gaps = 15/453 (3%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L GL+K+  +  AL +FD +P  +VV+W S +SG    G  + A EMF+ M   GV  + 
Sbjct: 36  LDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALND 95

Query: 148 FTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           F  +  L+  ++A       G+Q+H   +R+G  + +  +G+ L+++Y + G    A  V
Sbjct: 96  FACNAALAACAAAGPGALRTGEQVHSLAVRAGF-VGDAWVGSCLVELYARCGSTRAAEAV 154

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
              ME  D++++ SL+S    SG   +A +    M   G  P+E+T++ ++ AC  L   
Sbjct: 155 LARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLV-- 212

Query: 263 DKGKQVFALSVKVGFLSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
             G Q+    +K    S S+  S+T +D +S+    + +  +F+ L   +      M+  
Sbjct: 213 -LGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQL 271

Query: 322 YGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN 380
           + R G  E AL+LF  M+ E  + P EF  S  L +     +  GSQ HS+AIK G  S+
Sbjct: 272 HIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGA--CESIALGSQLHSLAIKHGLASH 329

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V+++L+ MY + G +     +F  ++  D+VSW   +    QNG   + + +   +  
Sbjct: 330 LRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHS 389

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
           +GL P+    ++VL +C     +D+G   F  +  + G          +I++  + GQ+ 
Sbjct: 390 QGLTPNDYAFSSVLSSCADLALLDQGRQ-FHCLALKLGCDVKTCTGNALINMYSKCGQIV 448

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            A      M  +   S W S++   A +G+V +
Sbjct: 449 PARLAFDIMDHRDVTS-WNSLIHGHAQHGEVDM 480



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 143/285 (50%), Gaps = 6/285 (2%)

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           + VV     +D   K G +  A  +F  M   ++++W S +SG   +G  E A + F  M
Sbjct: 27  AEVVRDCKRLDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADM 86

Query: 238 RYSGYSPDEYTISIVINACTKLRNLD--KGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
             SG + +++  +  + AC          G+QV +L+V+ GF+ ++ V S  ++L+++C 
Sbjct: 87  VESGVALNDFACNAALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCG 146

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
               +  +  +++  D      ++S   R G   +A E    M+   + P E T++ +L+
Sbjct: 147 STRAAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILA 206

Query: 356 SIPIPPVEHGSQFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +    P+  G Q H   IK+ GF  +   +S+L++ Y++ G  D +  +F  L  +++V+
Sbjct: 207 A--CCPLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVT 264

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACN 458
           W T+M    ++GR  + L +F+E++ EG + P+    +  L AC 
Sbjct: 265 WCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGACE 309



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 37/284 (13%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           +S      +H    K G  +H  + N  L +Y R G    +  +F               
Sbjct: 309 ESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMF--------------- 353

Query: 89  RGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
           RG                I +PD+VSW + IS Y   G+ + A+ + S+M  QG+ P+ +
Sbjct: 354 RG----------------IEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDY 397

Query: 149 TFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            FS +LS+ +       G+Q H   ++ G  +     GN+LI+MY K G +  A   F  
Sbjct: 398 AFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCT-GNALINMYSKCGQIVPARLAFDI 456

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M+  D+ SWNSLI G    G  ++ L  F  M  +G  P+E T+  V+ AC     +D+G
Sbjct: 457 MDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEG 516

Query: 266 KQVF--ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              F  A++   G        +  +D+  +  R +D++ L E++
Sbjct: 517 VAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEM 560



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 39/227 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      D  +  H    KLG +  T  GN  +++YS+ G        FD +  
Sbjct: 400 SSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDH 459

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEM 134
           ++  SWN  + G  +   +D  LK F E+     EP+  +   +++     G  D  +  
Sbjct: 460 RDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAF 519

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F +  + G+      +   L+    AC                        ++DM G+ G
Sbjct: 520 F-RSAMAGL------YGTFLTPPHYAC------------------------MVDMLGRSG 548

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSG---YGELALDQFYSM 237
               A  +   M  E  ++ W +L++ C   G    G LA ++   +
Sbjct: 549 RFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLAAEKLVEL 595


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 182/622 (29%), Positives = 313/622 (50%), Gaps = 45/622 (7%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           SQL+ +C+  +S    K I   + K GF      G++ +D                    
Sbjct: 51  SQLLRQCIDERSISGIKNIQAQMLKSGFPVELS-GSKLVD-------------------- 89

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                        LK   +  A ++FD +PE  +V+WNS+I+ Y     S  A+EM+  M
Sbjct: 90  -----------ASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLM 138

Query: 139 QLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V P  +T S +    S +S     ++ HG  +  GL +SNV +G++L+DMY K G 
Sbjct: 139 ISNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGK 198

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  V   +EE D++   +LI G    G    A+  F SM      P+EYT + V+ +
Sbjct: 199 TREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLIS 258

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L+++  GK +  L VK GF S     ++ + ++ +C+ ++DS+ +F+ +   +    
Sbjct: 259 CGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTW 318

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             +IS   + G  E AL  F+ M+R+ ++P  FTLS  L     +   E G Q H +  K
Sbjct: 319 TSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSK 378

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GFD +    S L+E+Y K G  D +  +F  L + D++S NT++    QNG   E L++
Sbjct: 379 YGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALEL 438

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FE ++  GL P+ +T+ +VLLACN  G V++G  +F + +++  +M   +HYAC++D+L 
Sbjct: 439 FERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKD-KIMLTNDHYACMVDMLG 497

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A ++  T    P   +W ++L A  ++  V++ E +  +++++         L
Sbjct: 498 RAGRLEEA-EMLITEVTNPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLIL 556

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL-QHHGGQKIYL 613
           L+  YA  G+W+ ++ +K  M++  + K    SW+ I    +TF AG+L  H   ++I  
Sbjct: 557 LSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQILE 616

Query: 614 VLRLLTWE------MEDEGCVY 629
            L  L  +      +ED+ CV+
Sbjct: 617 NLEELIKKAKDLGYVEDKSCVF 638



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 36/309 (11%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +Y S LI  C + K     K IHG + K GF +        L +Y R    DD L +F  
Sbjct: 251 TYASVLIS-CGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKC 309

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           I   N ++W                                S+ISG    G  + AL  F
Sbjct: 310 IKYPNQVTW-------------------------------TSLISGLVQNGREETALIEF 338

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            KM    V+P+ FT S  L   S+      G+Q+HG + + G        G+ LI++YGK
Sbjct: 339 RKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYA-GSGLIELYGK 397

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G    A  VF  + E+D+IS N++I     +G+G  AL+ F  M   G  P++ T+  V
Sbjct: 398 CGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSV 457

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC     +++G ++F    K   +  +   +  +D+  +  RLE++  L  ++   D 
Sbjct: 458 LLACNNSGLVEEGCELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVTNPDL 517

Query: 313 AVINVMIST 321
            +   ++S 
Sbjct: 518 VLWRTLLSA 526


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 268/472 (56%), Gaps = 7/472 (1%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            GK +H  ++ S    +++V+ NS++ MY K G L  A  VF  M   D+++W S+I+G 
Sbjct: 109 QGKLVHTHLMNSKFR-NDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGY 167

Query: 222 FNSGYGE---LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
              GY      AL  F  M   G  P+E+ +S ++  C  L +   GKQ+     K GF 
Sbjct: 168 SQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQ 227

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            N  V S+ +D++++C  L +S  +F++L+  +    N +IS + R G GE AL LF  M
Sbjct: 228 ENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKM 287

Query: 339 LREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            RE    TEFT S +L SS     +E G   H+  +KSG      V ++L+ MYAK+G+I
Sbjct: 288 QREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNI 347

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLA 456
             + ++F +L K D+VS N++++G  Q+G   E +++FEE+ L   + P+ IT  +VL A
Sbjct: 348 CDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTA 407

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G +D+G+  F  MK+ YG+ P   HY  ++DL  +AG L +A      MP +P  +
Sbjct: 408 CSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNAT 466

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           IW ++L AS ++ + ++    A+++++L    P  ++LL+  YA  G+W+ + +V+K M+
Sbjct: 467 IWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMK 526

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +G+ K   CSW+ I+N ++ F+A ++ H    K+Y +   L  ++++ G V
Sbjct: 527 DSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYV 578



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 192/390 (49%), Gaps = 40/390 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++L+ RC         K +H HL    F     + N  L +Y++ G+ +   Q+FDE+  
Sbjct: 95  NKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCV 154

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD---YALEMF 135
           K                               DVV+W SMI+GY+  GY+     AL +F
Sbjct: 155 K-------------------------------DVVTWTSMITGYSQDGYASSATTALVLF 183

Query: 136 SKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +M   G+RP+ F  S L+     + S   GKQIHG   + G    NV +G+SL+DMY +
Sbjct: 184 LEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQ-ENVFVGSSLVDMYAR 242

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G L  +  VF  +E  + +SWN+LISG    G GE AL  F  M+  G+   E+T S +
Sbjct: 243 CGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSAL 302

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + + +   +L++GK + A  +K G      V +  + +++K   + D+ ++F++L + D 
Sbjct: 303 LCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDV 362

Query: 313 AVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
              N M+  Y ++G G+ A+ELF ++ML  +I P + T   VL++      ++ G  +  
Sbjct: 363 VSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFE 422

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           +  K G +      +++++++ + G +D +
Sbjct: 423 LMKKYGLEPKLSHYTTVVDLFGRAGLLDQA 452



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 42/299 (14%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           +SL  C   +  C+        K IHG  +K GF  + ++G+  +D+Y+R G   +   +
Sbjct: 199 SSLVKCCGFLGSCVD------GKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLV 252

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FDE+  KN +SW                               N++ISG+A  G  + AL
Sbjct: 253 FDELESKNEVSW-------------------------------NALISGFARKGEGEEAL 281

Query: 133 EMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F KMQ +G   + FT+S LL   ST  S   GK +H  M++SG  L   V GN+L+ M
Sbjct: 282 GLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYV-GNTLLHM 340

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR-YSGYSPDEYT 248
           Y K G +  A  VF  + ++D++S NS++ G    G G+ A++ F  M  +    P++ T
Sbjct: 341 YAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDIT 400

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
              V+ AC+    LD+G   F L  K G        +  +DLF +   L+ +    E++
Sbjct: 401 FLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEM 459



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 4/234 (1%)

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           PD    + ++  CT L  L +GK V    +   F ++ ++ ++ + +++KC  LE + ++
Sbjct: 89  PDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQV 148

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGE---VALELFQLMLREDIRPTEFTLSCVLSSIP-I 359
           F+++   D      MI+ Y + G+      AL LF  M+R+ +RP EF LS ++     +
Sbjct: 149 FDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFL 208

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
                G Q H    K GF  N  V SSL++MYA+ G +  S  +F +L+ ++ VSWN ++
Sbjct: 209 GSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALI 268

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            G  + G   E L +F ++  EG      T +A+L + +  G +++G  + + M
Sbjct: 269 SGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHM 322



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           ++ G   H+  + S F ++ V+ +S++ MYAK GS++ + ++F ++  +D+V+W +++ G
Sbjct: 107 LKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITG 166

Query: 422 LTQNGRAAE---TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
            +Q+G A+     L +F E++ +GL P+   L++++  C + G    G  +      +YG
Sbjct: 167 YSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCC-WKYG 225

Query: 479 VMPGEEHYACIIDLLCQAGQL 499
                   + ++D+  + G+L
Sbjct: 226 FQENVFVGSSLVDMYARCGEL 246


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 167/535 (31%), Positives = 280/535 (52%), Gaps = 46/535 (8%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           N D ALKVF  IP P+V  WN +I G         A+  + +M +   RP+ FT+  L  
Sbjct: 82  NFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFK 140

Query: 156 TVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             S A     G+QIHG +++ G+  S+V + ++ I MY   G L  A  +F + E  D++
Sbjct: 141 ACSVAQAVQEGRQIHGHVVKHGIG-SDVHIKSAGIHMYASFGRLEDARKMFYSGES-DVV 198

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
            WN++I G    G  E A   F  M          + +++IN   K  NL          
Sbjct: 199 CWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG----SWNVMINGLAKGGNLG--------- 245

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
                                     D+ +LF+++   D    + M+  Y   G  + AL
Sbjct: 246 --------------------------DARKLFDEMSERDEISWSSMVDGYISAGRYKEAL 279

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           E+FQ M RE+ RP  F LS VL++   I  ++ G   H+   ++    +AV+ ++L++MY
Sbjct: 280 EIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMY 339

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +D   E+F ++ +R++ +WN ++ GL  +GRA + L++F +L E  + P+ ITL 
Sbjct: 340 AKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLV 399

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            VL AC + GFVDKG+ +F  M+E YGV P  EHY C++DLL ++G   +A D+ ++MP 
Sbjct: 400 GVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM 459

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P  ++W ++L A  I+G+  L E V + +++L+  +   Y LL+  YA  GR++ + ++
Sbjct: 460 KPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKI 519

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           +K+M+  GI  V G S + +   ++ F  G+  H   ++IY  L+++   ++  G
Sbjct: 520 RKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAG 574



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 34/282 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ--------- 71
           L   C   ++    + IHGH+ K G  +  ++ +  + +Y+ FG  +D  +         
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDV 197

Query: 72  ---------------------LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEP 110
                                LF ++P KN  SWN+ + GL K  NL  A K+FDE+ E 
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIH 167
           D +SW+SM+ GY S G    ALE+F +MQ +  RP  F  S +L   S + +   G+ +H
Sbjct: 258 DEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVH 317

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
             + R+ + L + VLG +L+DMY K G L   + VF  M+E +I +WN++I G    G  
Sbjct: 318 AYLKRNSIKL-DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRA 376

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           E AL+ F  ++     P+  T+  V+ AC     +DKG ++F
Sbjct: 377 EDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 162/395 (41%), Gaps = 97/395 (24%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS--RFGTSDDVLQLFDEIPQKNCISW 84
           S  S  +   +HG + + G     Y+    L  Y+   F   D  L++F  IP  N   W
Sbjct: 42  SITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIW 101

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           NI ++G L+++      K+F                          A+  + +M +   R
Sbjct: 102 NIVIKGCLENN------KLFK-------------------------AIYFYGRMVIDA-R 129

Query: 145 PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSL------------------------ 177
           P+ FT+  L    S A     G+QIHG +++ G+                          
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKM 189

Query: 178 -----SNVVLGNSLIDMYGKLGVLYYAFGVFLN--------------------------- 205
                S+VV  N++ID Y K GVL  A G+F                             
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249

Query: 206 ----MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
               M E D ISW+S++ G  ++G  + AL+ F  M+     P  + +S V+ AC+ +  
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +D+G+ V A   +     ++++ +A +D+++KC RL+    +FE++   +    N MI  
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
              +G  E ALELF  +    ++P   TL  VL++
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTA 404



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 193/425 (45%), Gaps = 46/425 (10%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK--LGVLYYAFGVFLNMEELDIIS 213
           +++S  +  Q+HG ++RSG    + V G +L+  Y         +A  VF ++   ++  
Sbjct: 42  SITSLQYLTQLHGLVLRSGHFQDHYVSG-ALLKCYANPHFSNFDFALKVFSSIPNPNVFI 100

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN +I GC  +     A+  FY        P+++T   +  AC+  + + +G+Q+    V
Sbjct: 101 WNIVIKGCLENNKLFKAI-YFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G  S+  + SA I +++   RLED+ ++F   +  D    N MI  Y + G  E A  
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKG 218

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           LF  M                      PV++   ++ M                +   AK
Sbjct: 219 LFAQM----------------------PVKNIGSWNVM----------------INGLAK 240

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G++  + ++F ++ +RD +SW++++ G    GR  E L++F+++  E   P R  L++V
Sbjct: 241 GGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSV 300

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC+  G +D+G  V + +K     +      A ++D+  + G+L    ++   M  + 
Sbjct: 301 LAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTA-LLDMYAKCGRLDMGWEVFEEMK-ER 358

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVK 572
               W +++   AI+G  +    +  ++ + ++ P+ +    +  A A  G  +  +R+ 
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIF 418

Query: 573 KVMRK 577
           + MR+
Sbjct: 419 QTMRE 423



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +  + D  + +H +L +        LG   LD+Y++ G  D   ++F+E+ +
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKE 357

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +   +WN  + GL      + AL++F ++ E    P+ ++   +++  A  G+ D  L +
Sbjct: 358 REIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRI 417

Query: 135 FSKM-QLQGVRP 145
           F  M +  GV P
Sbjct: 418 FQTMREFYGVDP 429



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/264 (17%), Positives = 108/264 (40%), Gaps = 44/264 (16%)

Query: 349 TLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT--GSIDSSTEIFVK 406
           T+  +  S  I  +++ +Q H + ++SG   +  V+ +L++ YA     + D + ++F  
Sbjct: 33  TVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSS 92

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           +   ++  WN ++ G  +N +  + +  +  ++ +   P++ T   +  AC+    V +G
Sbjct: 93  IPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEG 151

Query: 467 MLVFS------------------AMKEEYGVMP--------GEEHYAC---IIDLLCQAG 497
             +                     M   +G +         GE    C   +ID   + G
Sbjct: 152 RQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCG 211

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDV----KLTENVAERMMDLQLPSPLPYS 553
            L  A  + + MP +     W  ++   A  G++    KL + ++ER         + +S
Sbjct: 212 VLEAAKGLFAQMPVK-NIGSWNVMINGLAKGGNLGDARKLFDEMSER-------DEISWS 263

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRK 577
            +   Y   GR++  + + + M++
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQR 287


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 163/546 (29%), Positives = 298/546 (54%), Gaps = 19/546 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           ++ +L  A +VFD + E   V W  +I+ Y   G +   +E+F  M   G  P G++ S 
Sbjct: 192 RNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSS 251

Query: 153 LLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV---LYYAFGVFLNM 206
           ++S  +   S   G+Q+H   +R GL +S+  +   L+DMY KL +   + +A  VF  M
Sbjct: 252 MISACTELGSVRLGQQLHSVALRLGL-VSDSCVSCGLVDMYAKLKMERSMEHARKVFKTM 310

Query: 207 EELDIISWNSLISGCFNSGYGE---LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
              +++SW +LISG   SG  E   +AL  F  M      P+  T S ++ AC  L + D
Sbjct: 311 PRHNVMSWTALISGYVQSGVQENNVMAL--FREMLNESIRPNHITYSNLLKACANLSDQD 368

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+Q+ A  +K      ++V +A + ++++   +E++ + F+QL   +   ++  + T  
Sbjct: 369 SGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETER 428

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
                   +E        D   + FT + +LS+   +  +  G + H++++K+GF S+  
Sbjct: 429 NNASCSSKIEGM------DDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQG 482

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           +++SL+ MYA+ G ++ +   F ++   +++SW +I+ GL ++G A + L +F +++  G
Sbjct: 483 ISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAG 542

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + P+ +T  AVL AC++ G V +G   F +M++++G++P  EHYACI+DLL ++G + +A
Sbjct: 543 VKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEA 602

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
               + MP +    +W+++L A   YG+ ++ E  A  +++L+   P PY LL+  YA  
Sbjct: 603 RQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADA 662

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           G W+ + R++ +MR   ++K TG SW+ + N I+ F AG+  H     IY  L  L  E+
Sbjct: 663 GLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREI 722

Query: 623 EDEGCV 628
           +D G V
Sbjct: 723 KDIGYV 728



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 233/485 (48%), Gaps = 26/485 (5%)

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI-PEPDVVSWNSMIS 120
           R G +     L  EI   + +  N  L    K   ++ A +VFD++    D+VSW +M S
Sbjct: 57  RLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMAS 116

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC--------HGKQIHGSMIR 172
             A  G    +L +  +M   G+RP+ FT    L   + AC         G  + G +++
Sbjct: 117 CLARNGAERESLRLLGEMLELGLRPNAFT----LCAAARACFPQELFRLAGGVVLGFVLK 172

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
           +G   ++V +G +LIDM+ + G L  A  VF  + E   + W  LI+    +G     ++
Sbjct: 173 TGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVE 232

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            F  M   G+ PD Y++S +I+ACT+L ++  G+Q+ ++++++G +S+S V    +D+++
Sbjct: 233 LFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYA 292

Query: 293 KCN---RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE-VALELFQLMLREDIRPTEF 348
           K      +E + ++F+ + R +      +IS Y + G  E   + LF+ ML E IRP   
Sbjct: 293 KLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHI 352

Query: 349 TLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           T S +L +   +   + G Q H+  +K+      VV ++L+ MYA++G ++ + + F +L
Sbjct: 353 TYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQL 412

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
            + +++S +  +     N   +  +    E +++G+     T A++L A    G + KG 
Sbjct: 413 YETNILSMSPDVETERNNASCSSKI----EGMDDGVST--FTFASLLSAAASVGLLTKGQ 466

Query: 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            +  A+  + G    +     ++ +  + G L  A      M      S W SI+   A 
Sbjct: 467 KLH-ALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVIS-WTSIISGLAK 524

Query: 528 YGDVK 532
           +G  K
Sbjct: 525 HGYAK 529



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 46/321 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C +    D  + IH H+ K        +GN  + +Y+  G  ++  + FD++ +
Sbjct: 355 SNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYE 414

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            N +S +                        PDV +  +     ASC          SK+
Sbjct: 415 TNILSMS------------------------PDVETERN----NASCS---------SKI 437

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +      S FTF+ LLS  +S      G+++H   +++G   S+  + NSL+ MY + G 
Sbjct: 438 EGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFR-SDQGISNSLVSMYARCGY 496

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  A   F  M++ ++ISW S+ISG    GY + AL  F+ M  +G  P++ T   V++A
Sbjct: 497 LEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSA 556

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+ +  + +GK+ F ++    G L      +  +DL ++   +E++ +   ++  + D  
Sbjct: 557 CSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADAL 616

Query: 314 VINVMIS---TYGRYGFGEVA 331
           V   ++S   TYG    GE+A
Sbjct: 617 VWKTLLSACRTYGNTEIGEIA 637



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 38/217 (17%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    K GF +   + N  + +Y+R G  +D  + FDE+   N ISW          
Sbjct: 466 QKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISW---------- 515

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                 S+ISG A  GY+  AL MF  M L GV+P+  T+  +L
Sbjct: 516 ---------------------TSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVL 554

Query: 155 STVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELD 210
           S  S       GK+   SM +    L  +     ++D+  + G++  A      M  + D
Sbjct: 555 SACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKAD 614

Query: 211 IISWNSLISGCF---NSGYGELALDQFYSMRYSGYSP 244
            + W +L+S C    N+  GE+A +   ++     +P
Sbjct: 615 ALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAP 651


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 162/597 (27%), Positives = 307/597 (51%), Gaps = 41/597 (6%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN ASL     ++  C   +   F   +HG + K G ++   LGN  +D+Y +FG     
Sbjct: 175 VNVASLV---SVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFG----- 226

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     +++ ++KVF+ +PE + VSWNS I  + + G   
Sbjct: 227 --------------------------HVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYG 260

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
             L +F  M  +G  P   T S LL  +    +   G+++HG  I+  + L ++ + NSL
Sbjct: 261 DVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMEL-DIFVANSL 319

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +DMY K G L  A  VF  +E  +++SWN++I+    +G    A      M+  G  P+ 
Sbjct: 320 VDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNS 379

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
            T+  ++ AC+++ +L  GKQ+ A S++ G + +  + +A ID+++KC +L  +  +F+ 
Sbjct: 380 ITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD- 438

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
           L   D    N +I  Y +  +   +L LF+ +    I     +    L++   +   + G
Sbjct: 439 LSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQG 498

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
            + H + ++    ++  +A++L+ +Y K G +D++++IF ++ ++D+ SWN ++MG   +
Sbjct: 499 KEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMH 558

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G+      +F+ + + G+  D ++  AVL  C++GG V++G   FS M  +  + P + H
Sbjct: 559 GQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ-NLEPQQMH 617

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           YAC++DLL ++GQL ++++I   MPF     +W ++L A  I+G+++L +  A+ + +L+
Sbjct: 618 YACMVDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELK 677

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
                 YS+L   YA  GRW    +++ +M+   + K    SW+   N++  F  G+
Sbjct: 678 PEHSGYYSVLRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 734



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 237/460 (51%), Gaps = 32/460 (6%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFDE+P  DVVSWNS++S + +    D A +    M   GV  +  +    L +V  
Sbjct: 130 ARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVAS----LVSVVP 185

Query: 160 ACHGKQ-------IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           AC  +Q       +HG ++++GL  S V LGN+L+DMYGK G +  +  VF  M E + +
Sbjct: 186 ACGVEQEGGFGLGVHGLVLKTGLD-SIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEV 244

Query: 213 SWNSLISGCF-NSG-YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           SWNS I GCF N+G YG++ L  F  M   G+ P   T+S ++ A  +L   D G++V  
Sbjct: 245 SWNSAI-GCFLNAGLYGDV-LALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHG 302

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            S+K     +  V ++ +D+++K   LE +  +FE+++  +    N MI+   + G    
Sbjct: 303 YSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESE 362

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A  L   M ++   P   TL  +L +   +  ++ G Q H+ +I++G   +  ++++L++
Sbjct: 363 AFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALID 422

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MYAK G +  +  IF  L ++D VS+NT+++G +Q+  + E+L++F++L   G+  D I+
Sbjct: 423 MYAKCGQLRLAQSIF-DLSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAIS 481

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE---EH---YACIIDLLCQAGQLGKAI 503
               L AC         +  F   KE +GV+       H      ++ L  + G L  A 
Sbjct: 482 FMGALTACT-------NLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTAS 534

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            I + +  +   + W +++    ++G +    ++ + M D
Sbjct: 535 KIFNRIK-EKDVASWNNMIMGYGMHGQIDAAFHLFDLMKD 573



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 191/397 (48%), Gaps = 8/397 (2%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-----HGKQIHGS 169
           WNS+    +S      AL +++ M   GV P   TF   L   ++A       G ++H +
Sbjct: 42  WNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAA 101

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
            +RSG  L++V  GN+L+  Y   G    A  VF  M   D++SWNSL+S    +   + 
Sbjct: 102 ALRSG-HLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDD 160

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
           A     SM  SG   +  ++  V+ AC   +    G  V  L +K G  S   + +A +D
Sbjct: 161 ARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVD 220

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++ K   +E S+++FE +   +    N  I  +   G     L LF+ M      P   T
Sbjct: 221 MYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSIT 280

Query: 350 LSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           LS +L + + +   + G + H  +IK   + +  VA+SL++MYAK GS++ +  +F K++
Sbjct: 281 LSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIE 340

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
            R++VSWN ++  L QNG  +E   +  ++ ++G  P+ ITL  +L AC+    +  G  
Sbjct: 341 VRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQ 400

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           +  A     G+M        +ID+  + GQL  A  I
Sbjct: 401 I-HAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSI 436


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 305/610 (50%), Gaps = 41/610 (6%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            C   +     K +HG   KL  +    L N  +D+YS+ G                CI+ 
Sbjct: 657  CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCG----------------CIT- 699

Query: 85   NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                           A  +F      +VVSWN+M+ G+++ G +    ++  +M   G  
Sbjct: 700  --------------NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 745

Query: 145  PSGFTFSILLSTVSSACHG------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
                  +IL + V    H       K++H   ++    + N ++ N+ +  Y K G L Y
Sbjct: 746  VKADEVTIL-NAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAKCGSLSY 803

Query: 199  AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            A  VF  +    + SWN+LI G   S    L+LD    M+ SG  PD +T+  +++AC+K
Sbjct: 804  AQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSK 863

Query: 259  LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
            L++L  GK+V    ++     +  V  + + L+  C  L     LF+ ++       N +
Sbjct: 864  LKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTV 923

Query: 319  ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGF 377
            I+ Y + GF + AL +F+ M+   I+    ++  V  +  + P +  G + H+ A+K   
Sbjct: 924  ITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLL 983

Query: 378  DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
            + +A +A SL++MYAK GSI  S+++F  L ++   SWN ++MG   +G A E + +FEE
Sbjct: 984  EDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEE 1043

Query: 438  LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
            +   G  PD +T   VL ACN+ G + +G+     MK  +G+ P  +HYAC+ID+L +AG
Sbjct: 1044 MQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAG 1103

Query: 498  QLGKAIDITS-TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
            QL KA+ + +  M  +    IW+S+L +  I+ ++++ E VA ++ +L+   P  Y LL+
Sbjct: 1104 QLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLS 1163

Query: 557  QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
              YA  G+WE + +V++ M +  + K  GCSWI +  ++++F  GE    G ++I  +  
Sbjct: 1164 NLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWS 1223

Query: 617  LLTWEMEDEG 626
            +L  ++   G
Sbjct: 1224 ILEMKISKMG 1233



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 225/533 (42%), Gaps = 48/533 (9%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            +I  C           +HG + K G     ++GN  +  Y   G   D LQLFD +    
Sbjct: 548  VIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIM---- 603

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                       PE ++VSWNSMI  ++  G+S+ +  +  +M  
Sbjct: 604  ---------------------------PERNLVSWNSMIRVFSDNGFSEESFLLLGEMME 636

Query: 141  QGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            +    +       L TV   C        GK +HG  ++  L    +VL N+L+DMY K 
Sbjct: 637  ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLD-KELVLNNALMDMYSKC 695

Query: 194  GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG--YSPDEYTISI 251
            G +  A  +F      +++SWN+++ G    G      D    M   G     DE TI  
Sbjct: 696  GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 755

Query: 252  VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
             +  C     L   K++   S+K  F+ N +V +A +  ++KC  L  + R+F  +    
Sbjct: 756  AVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT 815

Query: 312  YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS 370
                N +I  + +     ++L+    M    + P  FT+  +LS+   +  +  G + H 
Sbjct: 816  VNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHG 875

Query: 371  MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
              I++  + +  V  S++ +Y   G + +   +F  ++ + LVSWNT++ G  QNG    
Sbjct: 876  FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDR 935

Query: 431  TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYAC- 488
             L VF +++  G+    I++  V  AC+    +  G    + A+K    ++  +   AC 
Sbjct: 936  ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH---LLEDDAFIACS 992

Query: 489  IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +ID+  + G + ++  + + +  +   S W +++    I+G  K    + E M
Sbjct: 993  LIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHGLAKEAIKLFEEM 1044



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 198/423 (46%), Gaps = 53/423 (12%)

Query: 52  LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD 111
           L  R + +Y+  G+ DD   +FD +  KN   WN  +    +++  D  L+ F       
Sbjct: 477 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETF------- 529

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHG 168
                               +EM S   L    P  FT+  ++     +S    G  +HG
Sbjct: 530 --------------------IEMISTTDLL---PDHFTYPCVIKACAGMSDVGIGLAVHG 566

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            ++++GL + +V +GN+L+  YG  G +  A  +F  M E +++SWNS+I    ++G+ E
Sbjct: 567 LVVKTGL-VEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSE 625

Query: 229 ---LALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
              L L +       G + PD  T+  V+  C + R +  GK V   +VK+      ++ 
Sbjct: 626 ESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLN 685

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR--ED 342
           +A +D++SKC  + ++  +F+  +  +    N M+  +   G      ++ + ML   ED
Sbjct: 686 NALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGED 745

Query: 343 IRPTEFTLSCVLSSIPI-------PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           ++  E T   +L+++P+       P ++   + H  ++K  F  N +VA++ +  YAK G
Sbjct: 746 VKADEVT---ILNAVPVCFHESFLPSLK---ELHCYSLKQEFVYNELVANAFVASYAKCG 799

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S+  +  +F  +  + + SWN ++ G  Q+     +LD   ++   GL PD  T+ ++L 
Sbjct: 800 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 859

Query: 456 ACN 458
           AC+
Sbjct: 860 ACS 862



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 14/312 (4%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G++IH  +  S    ++ VL   +I MY   G    +  VF  +   ++  WN++IS   
Sbjct: 458 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 517

Query: 223 NSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +   +  L+ F  M   +   PD +T   VI AC  + ++  G  V  L VK G + + 
Sbjct: 518 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 577

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A +  +     + D+++LF+ +   +    N MI  +   GF E +  L   M+ E
Sbjct: 578 FVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEE 637

Query: 342 D----IRPTEFTLSCVLSSIPIPPVEH----GSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           +      P   TL  VL   P+   E     G   H  A+K   D   V+ ++LM+MY+K
Sbjct: 638 NGDGAFMPDVATLVTVL---PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSK 694

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE--EGLPPDRITLA 451
            G I ++  IF   + +++VSWNT++ G +  G    T DV  ++L   E +  D +T+ 
Sbjct: 695 CGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 754

Query: 452 AVLLACNYGGFV 463
             +  C +  F+
Sbjct: 755 NAVPVCFHESFL 766



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 58/353 (16%)

Query: 14   SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
            S + CS L+  C   KS    K +HG + +       ++    L LY   G    V  LF
Sbjct: 851  SFTVCS-LLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALF 909

Query: 74   DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            D +  K+ +SWN  + G L++                               G+ D AL 
Sbjct: 910  DAMEDKSLVSWNTVITGYLQN-------------------------------GFPDRALG 938

Query: 134  MFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
            +F +M L G++  G +   +    S + S   G++ H   ++  L   +  +  SLIDMY
Sbjct: 939  VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLE-DDAFIACSLIDMY 997

Query: 191  GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
             K G +  +  VF  ++E    SWN++I G    G  + A+  F  M+ +G++PD+ T  
Sbjct: 998  AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 1057

Query: 251  IVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
             V+ AC         LR LD+ K  F      G   N    +  ID+  +  +L+ ++R+
Sbjct: 1058 GVLTACNHSGLIHEGLRYLDQMKSSF------GLKPNLKHYACVIDMLGRAGQLDKALRV 1111

Query: 304  F--EQLDRWDYAVINVMIST---YGRYGFGE-VALELFQLMLREDIRPTEFTL 350
               E  +  D  +   ++S+   +     GE VA +LF+L   E  +P  + L
Sbjct: 1112 VAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFEL---EPEKPENYVL 1161


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/540 (29%), Positives = 283/540 (52%), Gaps = 2/540 (0%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
            L  S +L  A  VF++IP P   + NS+I GY +      A+  +  M LQG+ P  FT
Sbjct: 83  ALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFT 142

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           F  L  +    C GKQ+H    + G + S+  + N+L++MY   G L  A  VF  M   
Sbjct: 143 FPSLFKSCGVLCEGKQLHCHSTKLGFA-SDAYIQNTLMNMYSNCGCLVSARKVFDKMVNK 201

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            ++SW ++I           A+  F  M  +   P+E T+  V+ AC + R+L+  KQV 
Sbjct: 202 SVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVH 261

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
               + G   ++++ SA +D++ KC     +  LF ++   +    N+MI+ +      E
Sbjct: 262 KYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYE 321

Query: 330 VALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF  M    ++  + T++ +L +   +  +E G   H    K   + +  + ++L+
Sbjct: 322 EALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALV 381

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MYAK GSI+S+  +F ++ ++D+++W  +++GL   G+  + L++F E+    + PD I
Sbjct: 382 DMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 441

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G V++G+  F++M  +YG+ P  EHY C++D+L +AG++ +A D+   
Sbjct: 442 TFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQN 501

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP  P   +   +L A  I+G++ + E  A+++++L   +   Y LL+  Y+    WEA 
Sbjct: 502 MPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAA 561

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +++++M +  I K  GCS I +   ++ F  G++ H    +IY  L  +   ++  G V
Sbjct: 562 KKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYV 621



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 172/375 (45%), Gaps = 37/375 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H H  KLGF +  Y+ N  +++YS  G      ++FD++  K+ +            
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV------------ 204

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                              SW +MI  YA       A+++F +M++  V+P+  T   +L
Sbjct: 205 -------------------SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVL 245

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  + +      KQ+H  +  +G+   + VL ++L+D+Y K G    A  +F  M E ++
Sbjct: 246 TACARSRDLETAKQVHKYIDETGIGF-HTVLTSALMDVYCKCGCYPLARDLFNKMPEKNL 304

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
             WN +I+G       E AL  F  M+ SG   D+ T++ ++ ACT L  L+ GK +   
Sbjct: 305 FCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVY 364

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             K     +  + +A +D+++KC  +E ++R+F+++   D      +I      G G  A
Sbjct: 365 IEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKA 424

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVVASSLME 389
           LELF  M   +++P   T   VL++     +  E  + F+SM  K G   +      +++
Sbjct: 425 LELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVD 484

Query: 390 MYAKTGSIDSSTEIF 404
           M  + G I  + ++ 
Sbjct: 485 MLGRAGRIAEAEDLI 499



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 150/329 (45%), Gaps = 37/329 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C   +  + AK +H ++ + G   HT L +  +D+Y + G       LF+++P+KN
Sbjct: 244 VLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKN 303

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
              WNI + G ++  + + AL +F+E                               MQL
Sbjct: 304 LFCWNIMINGHVEDSDYEEALSLFNE-------------------------------MQL 332

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV+    T + LL   + + +   GK +H  + +  + + +V LG +L+DMY K G + 
Sbjct: 333 SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV-DVALGTALVDMYAKCGSIE 391

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  M E D+++W +LI G    G G  AL+ F+ M+ S   PD  T   V+ AC+
Sbjct: 392 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVI 315
               +++G   F ++  K G   +       +D+  +  R+ ++  L + +    DY V+
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVL 511

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIR 344
             ++S    +G   VA    Q ++  D +
Sbjct: 512 VGLLSACRIHGNLVVAERAAQQLIELDPK 540



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 109/269 (40%), Gaps = 54/269 (20%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    + +  K +H ++ K        LG   +D+Y++ G+ +  +++F E+P+
Sbjct: 343 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K+ ++W                                ++I G A CG    ALE+F +M
Sbjct: 403 KDVMTW-------------------------------TALIVGLAMCGQGLKALELFHEM 431

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
           Q+  V+P   TF  +L+  S        H  ++  G++  N +               ++
Sbjct: 432 QMSEVKPDAITFVGVLAACS--------HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 483

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           DM G+ G +  A  +  NM    D      L+S C    +G L + +  + +     P  
Sbjct: 484 DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC--RIHGNLVVAERAAQQLIELDPKN 541

Query: 247 -YTISIVINACTKLRNLDKGKQVFALSVK 274
             T  ++ N  + ++N +  K++  L V+
Sbjct: 542 GGTYVLLSNIYSSMKNWEAAKKMRELMVE 570


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 162/516 (31%), Positives = 275/516 (53%), Gaps = 9/516 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-V 143
           N  L   +K   L   L++FDE+PE +VVSW+++I+G+   G  + AL +F +M   G +
Sbjct: 254 NHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTI 313

Query: 144 RPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            P+ FT    L   S         QI+  ++R G   SNV L N+ +    +   L  A 
Sbjct: 314 MPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYG-SNVFLMNAFLTALIRHEKLLEAL 372

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKL 259
            VF +    D +SWN++++G     Y EL   +F+  M      PD +T + ++     L
Sbjct: 373 EVFESCLSKDTVSWNAMMAGYLQLAYFELP--KFWRRMNLESVKPDNFTFASILTGLAAL 430

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
                G QV    VK G+ ++  V ++  D++ K  +L D  + F+++   D      M 
Sbjct: 431 SEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMA 490

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           +   + G    AL++   M    +R  +FTL+  L+S   +  +E G +FH + IK G D
Sbjct: 491 AGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTD 550

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  V ++L++MYAK G + S+  +F  +D+R +VSW T++MG   NG+  E L +F+E+
Sbjct: 551 VDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEM 610

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            +    P+ IT   VL AC+ GGF+D+    FS+M  ++G+ P E+HY C+++LL +AG 
Sbjct: 611 RKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGC 670

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           + +A D+   MPFQPG  +W+++L A  ++GD++  +  AE  ++L    P  Y LL+  
Sbjct: 671 IKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGKRAAEHALNLDRNDPSTYILLSNM 730

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
           +A    W+++  ++++M    + KV G SW+    R
Sbjct: 731 FAGGDNWDSVGILRELMETRDVKKVPGSSWMSNMRR 766



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 35/247 (14%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           +   F     +HG L K G+     +GN   D+Y                          
Sbjct: 429 ALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMY-------------------------- 462

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                +K+  L    K FDE+   DV SW  M +G   CG    AL++  +M+  GVR +
Sbjct: 463 -----VKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLN 517

Query: 147 GFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT +  L++   ++S   GK+ HG  I+ G  + +V + N+L+DMY K G +  A  VF
Sbjct: 518 KFTLATALNSCANLASIEEGKKFHGLRIKLGTDV-DVCVDNALLDMYAKCGCMTSANVVF 576

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            +M+E  ++SW ++I G  ++G  + AL  F  MR     P+  T   V+NAC++   +D
Sbjct: 577 RSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFID 636

Query: 264 KGKQVFA 270
           +  + F+
Sbjct: 637 EAWKYFS 643



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           ++ C +  S +  K  HG   KLG +    + N  LD+Y++ G       +F  + +++ 
Sbjct: 525 LNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSV 584

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +SW   + G   +     AL++FDE+     EP+ +++  +++  +  G+ D A + FS 
Sbjct: 585 VSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSS 644

Query: 138 MQL-QGVRPS 146
           M    G+ PS
Sbjct: 645 MSADHGIAPS 654



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 348 FTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           F   CVL+S       HGS  H+  +K     +    + ++  Y K G +    ++F ++
Sbjct: 221 FLQRCVLTS----DSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEM 276

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACN 458
            +R++VSW+ I+ G  Q+GR  E L +F  +  +G + P+  TL + L AC+
Sbjct: 277 PERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACS 328


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 163/524 (31%), Positives = 266/524 (50%), Gaps = 7/524 (1%)

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH--GK 164
           P VVS+ + ISG A       AL  F+ M   G+RP+ FTF       + A   C   G 
Sbjct: 74  PTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGP 133

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           QIH   +R G    +  +  + +DMY K G L  A  +F  M   ++I+WN++++     
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVID 193

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G        ++ +R +G  P+  ++    NAC     L  G+Q     V  GF  +  V 
Sbjct: 194 GRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVS 253

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A +D + KC     +  +F+ +   +      MI  Y ++G  E AL ++         
Sbjct: 254 NAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEE 313

Query: 345 PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           PT+F +S VL++   +  +  G   H++A++S  D+N  VAS+L++MY K G ++ + ++
Sbjct: 314 PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQV 373

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGF 462
           F+ + +R+LV+WN ++ G    G A   L VF+ ++  G   P+ ITL  V+ AC+ GG 
Sbjct: 374 FLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGL 433

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
              G  +F  M+E +GV P  EHYAC++DLL +AG   +A +I   MP +P  S+W ++L
Sbjct: 434 TKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALL 493

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  ++G  +L    +E++ +L       + LL+   A  GRW     V+K M+  GI K
Sbjct: 494 GACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKK 553

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             GCSWI  KN ++ F A + +H    +I  +L  L  +M+  G
Sbjct: 554 EPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASG 597



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 182/430 (42%), Gaps = 52/430 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C   +       IH    + G+     ++    +D+Y + G      +LF+E+P +N I+
Sbjct: 123 CAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIA 182

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           WN  +   +         K +  + E    P+VV   S+ + + +C     A  MF  + 
Sbjct: 183 WNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVV---SVCAFFNAC-----AGAMFLSL- 233

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
                                  G+Q HG ++  G  + +V + N+++D YGK      A
Sbjct: 234 -----------------------GEQFHGFVVTCGFDM-DVSVSNAMVDFYGKCRCAGKA 269

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF  M   + +SW S+I      G  E AL  +   R +G  P ++ +S V+  C  L
Sbjct: 270 RAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGL 329

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
             L+ G+ + A++V+    +N  V SA +D++ KC  +ED+ ++F  +   +    N MI
Sbjct: 330 LGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMI 389

Query: 320 STYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSMAIKSG 376
             Y   G  + AL +F  M+R     P   TL  V+++     +       F +M  + G
Sbjct: 390 GGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFG 449

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI-----MMGLTQNGRAAE 430
            +      + ++++  + G  + + EI  ++  R  +S W  +     M G T+ GR A 
Sbjct: 450 VEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIAS 509

Query: 431 TLDVFEELLE 440
                E+L E
Sbjct: 510 -----EKLFE 514



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 11/248 (4%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  VFD +   + VSW SMI  YA  G  + AL ++   +  G  P+ F  S +L+T + 
Sbjct: 269 ARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAG 328

Query: 160 AC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
                 G+ +H   +RS +  +N+ + ++L+DMYGK G +  A  VFL+M E ++++WN+
Sbjct: 329 LLGLNFGRALHAVAVRSCID-ANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNA 387

Query: 217 LISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVK 274
           +I G  + G  + AL  F +M R  G SP+  T+  VI AC++      G ++F  +  +
Sbjct: 388 MIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRER 447

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMIST---YGRYGFGEV 330
            G    +   +  +DL  +    E +  + +++  R   +V   ++     +G+   G +
Sbjct: 448 FGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRI 507

Query: 331 ALE-LFQL 337
           A E LF+L
Sbjct: 508 ASEKLFEL 515



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 141/330 (42%), Gaps = 43/330 (13%)

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           L+++Y KL +   A     +     ++S+ + ISG         AL  F +M   G  P+
Sbjct: 51  LVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPN 110

Query: 246 EYTISIVIN--ACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVR 302
           ++T        AC   R    G Q+ AL+++ G+L  +  V  A +D++ K   L  + R
Sbjct: 111 DFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARR 170

Query: 303 LFEQLDR-----WDYAVINVMISTYGRYGFGEVALELFQ--LMLRED------IRPTEFT 349
           LFE++       W+  + N +I   GR       LE F+    LRE       +    F 
Sbjct: 171 LFEEMPNRNVIAWNAVMTNAVID--GR------PLETFKAYFGLREAGGMPNVVSVCAFF 222

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            +C  +      +  G QFH   +  GFD +  V++++++ Y K      +  +F  +  
Sbjct: 223 NACAGAMF----LSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRV 278

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC------NYG--- 460
           R+ VSW ++++   Q+G   + L V+      G  P    +++VL  C      N+G   
Sbjct: 279 RNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRAL 338

Query: 461 ------GFVDKGMLVFSAMKEEYGVMPGEE 484
                   +D  + V SA+ + YG   G E
Sbjct: 339 HAVAVRSCIDANIFVASALVDMYGKCGGVE 368



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 91/218 (41%), Gaps = 40/218 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +F + +H    +   +A+ ++ +  +D+Y + G  +D  Q+F ++P+
Sbjct: 320 SSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPE 379

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI-----PEPDVVSWNSMISGYASCGYSDYALE 133
           +N ++WN  + G     +   AL VFD +       P+ ++  ++I+  +  G +    E
Sbjct: 380 RNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYE 439

Query: 134 MFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +F  M+ + GV P          T   AC                        ++D+ G+
Sbjct: 440 LFDTMRERFGVEP---------RTEHYAC------------------------VVDLLGR 466

Query: 193 LGVLYYAFGVFLNMEELDIIS-WNSLISGCFNSGYGEL 229
            G+   A+ +   M     IS W +L+  C   G  EL
Sbjct: 467 AGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTEL 504


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 164/527 (31%), Positives = 283/527 (53%), Gaps = 18/527 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST--- 156
           A ++FD+IP+P++  WNSM  GYA        + +F +M+   +RP+ FTF ++L +   
Sbjct: 152 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 211

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +++   G+Q+H  +I+ G    N  +G +LIDMY   G +  A+ +F  M E ++++W S
Sbjct: 212 INALIEGEQVHCFLIKCGFR-GNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTS 270

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTI--SIVINACTKLRNLDKGKQVFALSVK 274
           +I+G        L+ D   + R    +P+   +  +I+++   +  ++ + +++F     
Sbjct: 271 MINGYI------LSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPN 324

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
              +  + VL      ++    +E    LFE++   +    N +I  Y   G     L  
Sbjct: 325 RDVMFWNTVLKG----YATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGS 380

Query: 335 FQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           F+ ML E D+ P + TL  VLS+   +  ++ G   H  A  SG   N  V ++LM+MYA
Sbjct: 381 FKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYA 440

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G I+++  +F  +D +DL+SWNT++ GL  + R A+ L++F ++   G  PD IT   
Sbjct: 441 KCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIG 500

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L AC + G V+ G   F +M ++Y +MP  EHY C++D+L +AG+L +A      MP +
Sbjct: 501 ILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVE 560

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
               IW  +L A  IY +V+L E   +R+++L+  +P  Y +L+  Y   GRWE + R+K
Sbjct: 561 ADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLK 620

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
             MR  G  K+ GCS I + + +  F + + +H   ++IY VLR L 
Sbjct: 621 VAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLV 667



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 151/354 (42%), Gaps = 68/354 (19%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C    +    + +H  L K GF  + ++G   +D+YS  GT  D  ++F E+ ++N
Sbjct: 205 VLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERN 264

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ- 139
            ++W   + G + S +L +A ++FD  PE DVV WN M+SGY   G    A ++F +M  
Sbjct: 265 VVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPN 324

Query: 140 ----------------------------------------LQGVRPSGFTFSIL------ 153
                                                   + G   +G  F +L      
Sbjct: 325 RDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRM 384

Query: 154 ------------LSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
                       L TV SAC        GK +H     SGL   NV +GN+L+DMY K G
Sbjct: 385 LSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLK-GNVYVGNALMDMYAKCG 443

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           ++  A  VF  M+  D+ISWN+LI G      G  AL+ F+ M+ +G  PD  T   ++ 
Sbjct: 444 IIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILC 503

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQL 307
           ACT +  ++ G   F        +   I      +D+ ++  RLE +     ++
Sbjct: 504 ACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKM 557



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 155/346 (44%), Gaps = 10/346 (2%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           QI   +I +G    N  +   L+ +   L  + YA  +F  + + +I  WNS+  G   S
Sbjct: 119 QIQAQIIANGFQY-NEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQS 177

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
                 +  F+ M+     P+ +T  +V+ +C K+  L +G+QV    +K GF  N  V 
Sbjct: 178 ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVG 237

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +  ID++S    + D+ ++F ++   +      MI+ Y        A  LF L    D+ 
Sbjct: 238 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 297

Query: 345 PTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
                +S  +    +  VE    F  M      + + +  +++++ YA  G++++   +F
Sbjct: 298 LWNIMVSGYIEGGDM--VEARKLFXEMP-----NRDVMFWNTVLKGYATNGNVEALEGLF 350

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFV 463
            ++ +R++ SWN ++ G   NG   E L  F+ +L E  +PP+  TL  VL AC   G +
Sbjct: 351 EEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGAL 410

Query: 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
           D G  V     E  G+         ++D+  + G +  AI +   M
Sbjct: 411 DLGKWV-HVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 455


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 164/515 (31%), Positives = 267/515 (51%), Gaps = 5/515 (0%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVFDE+   ++VSW  +IS YA  G  + A+ +FS MQ  G+RP+   +  LL +     
Sbjct: 143 KVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPS 202

Query: 162 H---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GKQIH  +IR+ L+ +N+ +  ++ +MY + G L  A  VF  M+  + ++W  L+
Sbjct: 203 FLELGKQIHSHVIRAQLN-ANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
            G   +   E+AL+ F  M   G   DE+  SIV+  C  L + D G+Q+ +  VK+G  
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAE 321

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           S   V +  +D + KC  +E + R F ++   +    + +IS + + G  E  +++F  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSL 381

Query: 339 LREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E +    F  + V  +      +  GSQ H  AIK G  S     S+++ MY+K G +
Sbjct: 382 RSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRL 441

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D +   F  +D+ D V+W  I+ G   +G AAE L  F  +   G+ P+ +T  AVL AC
Sbjct: 442 DYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTAC 501

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ G V +      +M  +YGV P  +HY C+ID   +AG L +A+++ + MPF+P    
Sbjct: 502 SHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMS 561

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W+S+L     + D+KL +  AE +  L       Y LL   Y+  G+WE    V+K+M +
Sbjct: 562 WKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAE 621

Query: 578 NGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
             + K   CSWI +K +++ F  G+  H   + IY
Sbjct: 622 RELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIY 656



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 175/381 (45%), Gaps = 6/381 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ IH  + R+  + S  +  N L+ MY   G       VF  M   +++SW  +IS   
Sbjct: 106 GRLIHDRLRRTVKNPSGSI-ENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYA 164

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G  E A+  F  M+ SG  P+      ++ +C     L+ GKQ+ +  ++    +N  
Sbjct: 165 KNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANIT 224

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A  +++ +C  LE +  +F+ +D  +      ++  Y +    EVALELF  M  E 
Sbjct: 225 VETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEG 284

Query: 343 IRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   EF  S VL     +   + G Q HS  +K G +S   V + L++ Y K G I+S+ 
Sbjct: 285 VELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAY 344

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
             F ++ + + VSW+ ++ G +Q+GR  + + +F  L  EG+  +     +V  AC    
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404

Query: 462 FVDKGMLVF-SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
            ++ G      A+K   G++      + ++ +  + G+L  A     ++  +P    W +
Sbjct: 405 NLNMGSQAHGDAIKR--GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTA 461

Query: 521 ILRASAIYGDVKLTENVAERM 541
           I+   A +G+         RM
Sbjct: 462 IISGYAYHGNAAEALGFFRRM 482



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 65/317 (20%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   + +D  + IH H+ KLG  +   +G   +D Y + G  +   + F  I + N +SW
Sbjct: 299 CCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           +  + G  +S  L+  +K+                               F+ ++ +GV 
Sbjct: 359 SALISGFSQSGRLEDCIKI-------------------------------FTSLRSEGVV 387

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            + F ++ +    ++  +   G Q HG  I+ GL +S +   ++++ MY K G L YA  
Sbjct: 388 LNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGL-VSYLYGESAMVTMYSKCGRLDYARR 446

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            F +++E D ++W ++ISG    G    AL  F  M+  G  P+  T   V+ AC+    
Sbjct: 447 AFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGL 506

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           + + KQ       +G +S    +  TID +                        + MI T
Sbjct: 507 VAEAKQY------LGSMSRDYGVKPTIDHY------------------------DCMIDT 536

Query: 322 YGRYGFGEVALELFQLM 338
           Y R G  + ALEL   M
Sbjct: 537 YSRAGLLQEALELINRM 553



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   LD A + F+ I EPD V+W ++ISGYA  G +  AL  F +MQ  GVRP+  TF  
Sbjct: 437 KCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIA 496

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           +L+  S +      KQ  GSM R       +   + +ID Y + G+L  A  +   M  E
Sbjct: 497 VLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFE 556

Query: 209 LDIISWNSLISGCF 222
            D +SW SL+ GC+
Sbjct: 557 PDAMSWKSLLGGCW 570


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 174/544 (31%), Positives = 287/544 (52%), Gaps = 25/544 (4%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC- 161
           VFD +   +V  WNS+I+GYA     + A ++F++M    V P  FT S L S VSS   
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTL-SKVSSELG 138

Query: 162 ---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GK IHG  IR G  +S+ V+ NS++ MY K G    +  VF  M   +  SWN LI
Sbjct: 139 ALFSGKSIHGKSIRIGF-VSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLI 197

Query: 219 SGCFNSG---YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +G   SG   + E   +    M+     PD YTIS ++  C      DKGK  +   +  
Sbjct: 198 AGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDG----DKGKWDYGRELHC 253

Query: 276 GFLSNSIVLS---------ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
             + N +VL            ID++S+ N++    R+F+++   +      MI+ Y   G
Sbjct: 254 YIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENG 313

Query: 327 FGEVALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
             + AL LF+ M   D I P   +L  VL +      +  G Q H  A++   ++   + 
Sbjct: 314 DSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLC 373

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           ++L++MY+K GS+DS+  +F      +D +SW++++ G   +G+  E + +++++L+ G+
Sbjct: 374 NALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGI 433

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD IT   +L AC+  G V++G+ ++S++  +YG+ P  E +ACI+D+L +AGQL  A+
Sbjct: 434 RPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPAL 493

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           D    MP +PG S+W +++  S I+GD+++ E     ++ L+  +P  Y  ++  YA   
Sbjct: 494 DFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSR 553

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RW+A+  V+++M+   + KV GCSWI I N+ + F   +  H     IY +L  L   M 
Sbjct: 554 RWDAVAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDLLLTMN 613

Query: 624 DEGC 627
           D  C
Sbjct: 614 DAIC 617



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 185/387 (47%), Gaps = 46/387 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K+IHG   ++GF + T + N  + +Y + G  ++  ++FDE+  +N  SWN+       
Sbjct: 143 GKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNV------- 195

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYA---SCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                   +I+GYA   +C + +   E   +MQ+  VRP  +T 
Sbjct: 196 ------------------------LIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTI 231

Query: 151 SILLSTVSSAC----HGKQIHGSMIRSGLSL---SNVVLGNSLIDMYGKLGVLYYAFGVF 203
           S LL           +G+++H  ++++ L L   S+V LG  LIDMY +   +     VF
Sbjct: 232 SSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVF 291

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNL 262
             M+  ++ SW ++I+G   +G  + AL  F  M+   G  P+  ++  V+ AC+    L
Sbjct: 292 DRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGL 351

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMIST 321
             G+Q+   +V+    +   + +A ID++SKC  L+ + R+FE       A+  + MIS 
Sbjct: 352 LSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISG 411

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS-GFDS 379
           YG +G G+ A+ L+  ML+  IRP   T   +LS+      V  G   +S  I   G + 
Sbjct: 412 YGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEP 471

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVK 406
              + + +++M  + G +D + + F+K
Sbjct: 472 TLEIFACIVDMLGRAGQLDPALD-FIK 497



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 194/383 (50%), Gaps = 26/383 (6%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG-CF 222
           +Q H  ++  GLS  N +L   LI  Y      Y++  VF +++  ++  WNSLI+G   
Sbjct: 43  RQSHSRILSLGLS-QNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAK 101

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           N  Y E A   F  M  S   PD++T+S +    ++L  L  GK +   S+++GF+S+++
Sbjct: 102 NRLYNE-AFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTV 160

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY---GRYGFGEVALELFQLML 339
           V ++ + ++ KC   E+S ++F+++   +    NV+I+ Y   G   F E   E  + M 
Sbjct: 161 VANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQ 220

Query: 340 REDIRPTEFTLSCVLSSIPI-----PPVEHGSQFHSMAIKS----GFDSNAVVASSLMEM 390
            +++RP  +T+S +L   P+        ++G + H   +K+    G DS+  +   L++M
Sbjct: 221 MDEVRPDAYTISSLL---PLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDM 277

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRIT 449
           Y+++  +     +F ++  R++ SW  ++ G  +NG + E L +F ++ + +G+ P+R++
Sbjct: 278 YSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVS 337

Query: 450 LAAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--IIDLLCQAGQLGKAIDIT 506
           L +VL AC ++ G +    +   A+++E       E   C  +ID+  + G L  A  + 
Sbjct: 338 LVSVLPACSSFSGLLSGRQIHGFAVRKEL----NNEVSLCNALIDMYSKCGSLDSARRVF 393

Query: 507 STMPFQPGCSIWESILRASAIYG 529
                      W S++    ++G
Sbjct: 394 EDDSLCKDAISWSSMISGYGLHG 416



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 104/203 (51%), Gaps = 4/203 (1%)

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           ++L   +Q  +  + +G   NS++ +  I  ++ C     S  +F+ L   +  + N +I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFD 378
           + Y +      A +LF  M   D+ P +FTLS +   S  +  +  G   H  +I+ GF 
Sbjct: 97  NGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFV 156

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA---AETLDVF 435
           S+ VVA+S+M MY K G+ + S ++F ++  R+  SWN ++ G   +G      ET +  
Sbjct: 157 SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFV 216

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
           +++  + + PD  T++++L  C+
Sbjct: 217 KQMQMDEVRPDAYTISSLLPLCD 239



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 34/199 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C SF      + IHG   +   N    L N  +D+YS+ G+ D   ++F++         
Sbjct: 345 CSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFED--------- 395

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                        D+  K        D +SW+SMISGY   G    A+ ++ KM   G+R
Sbjct: 396 -------------DSLCK--------DAISWSSMISGYGLHGKGQEAILLYDKMLQAGIR 434

Query: 145 PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P   T   +LS  S +     G  I+ S+I        + +   ++DM G+ G L  A  
Sbjct: 435 PDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALD 494

Query: 202 VFLNME-ELDIISWNSLIS 219
               M  E     W +L+S
Sbjct: 495 FIKAMPVEPGPSVWGALVS 513


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 174/581 (29%), Positives = 289/581 (49%), Gaps = 49/581 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    SF      H H+ K G      +GN  L LY + G              
Sbjct: 64  ASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGP------------- 110

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            ++    +VFD +   D +SW SM+SGY +      ALE+F +M
Sbjct: 111 -----------------DMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEM 153

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
              G++P+ FT    LS+   AC        G+  HG +I  G    N V+ ++L  MYG
Sbjct: 154 VSFGLQPNKFT----LSSAVKACFELGEVRLGRCFHGVVITHGFEW-NHVISSTLAYMYG 208

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTIS 250
                  A  VF  M E D+I W +++S    +   E AL  FY+M R  G  PD  T  
Sbjct: 209 VNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFG 268

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ AC  LR L +GK++    +  G  SN +V S+ +D++ K   + ++ ++F  + R 
Sbjct: 269 TVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRK 328

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           +    + ++  Y + G  E A+E+F+ M  +D+    +    VL +   +  V  G + H
Sbjct: 329 NIVSWSALLGGYCQNGEHEKAIEMFREMEEKDL----YCFGTVLKACAGLAAVRLGKEIH 384

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
              ++ G   N +V S+L+++Y K+G ID ++ ++ K+  R++++WN ++  L QNGR  
Sbjct: 385 GQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGE 444

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E +  F +++++G+ PD I+  AVL AC + G V++G   F+ M + YG+ PG EHY+C+
Sbjct: 445 EAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCM 504

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV-KLTENVAERMMDLQLPS 548
           IDLL +AG   +A ++      +   S+W  +L   A   D   + E +A+RMM+L+   
Sbjct: 505 IDLLGRAGLFEEAENLLDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKY 564

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            + Y LL+  Y   GR    ++++K+M + G+ K  G SWI
Sbjct: 565 HMSYVLLSNMYKAIGRHGDALKIRKLMVRRGVAKTVGQSWI 605


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  281 bits (719), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 279/523 (53%), Gaps = 37/523 (7%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           NL  AL +F+ I +P+   WN+MI G +       A++ + +M L GV P+ +TF  LL 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 156 T---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN------- 205
           +   V +   GKQIHG +++ GL  S+  +  SLI+MY + G L YA  VF         
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLE-SDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 206 ---------------------MEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
                                 EE+   D +SWN++I+G   SG  E AL  F  M+ + 
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            +P+E T+  V++AC +  +L+ G  V +     G  SN  +++A ID++SKC  L+ + 
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LFE +   D    NVMI  Y      + AL LF+ M + ++ P + T   +L +   + 
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 361 PVEHGSQFHSMAIKSGFD-SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
            ++ G   H+   K     +N  + +SL++MYAK G+I+++ ++F  +  + L SWN ++
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMI 439

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            GL  +G A   L++F ++ +EG  PD IT   VL AC++ G V+ G   FS+M E+Y +
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDI 499

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  +HY C+IDLL +AG   +A  +   M  +P  +IW S+L A  ++G+V+L E  A+
Sbjct: 500 SPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAK 559

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            + +L+  +P  Y LL+  YA  GRW+ + R++  +   G+ K
Sbjct: 560 HLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 201/410 (49%), Gaps = 16/410 (3%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    K IHGH+ KLG  +  ++    +++Y++ G       +F +   ++
Sbjct: 138 LLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRD 197

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G      LD A ++F+EIP  D VSWN+MI+GYA  G  + AL  F +M+ 
Sbjct: 198 AVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKR 257

Query: 141 QGVRPSGFTFSILLSTVSSAC--HGKQIHGSMIRS-----GLSLSNVVLGNSLIDMYGKL 193
             V P+  T    + TV SAC   G    G+ +RS     GL  SN+ L N+LIDMY K 
Sbjct: 258 ANVAPNEST----MVTVLSACAQSGSLELGNWVRSWIEDHGLG-SNLRLVNALIDMYSKC 312

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  +F  + E DIISWN +I G  +    + AL  F  M+ S   P++ T   ++
Sbjct: 313 GDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSIL 372

Query: 254 NACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
            AC  L  LD GK + A +  K   L+N+ + ++ ID+++KC  +E + ++F  +     
Sbjct: 373 PACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHS 370
              N MIS    +G   +ALELF+ M  E   P + T   VLS+      VE G Q F S
Sbjct: 433 GSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSS 492

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           M               ++++  + G  D +  +   ++ K D   W +++
Sbjct: 493 MVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 205/426 (48%), Gaps = 38/426 (8%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM--YGKLGVLYYAFGVFLNMEELD 210
           LLST  S  + KQIH  +I++GL  +   L + LI+       G L YA  +F ++E+ +
Sbjct: 38  LLSTCKSFQNLKQIHSQIIKTGLHNTQFAL-SKLIEFCAISPFGNLSYALLLFESIEQPN 96

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
              WN++I G   S     A+D +  M   G  P+ YT   ++ +C K+    +GKQ+  
Sbjct: 97  QFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHG 156

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNR-------------------------------LED 299
             +K+G  S+  V ++ I+++++                                  L+D
Sbjct: 157 HVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDD 216

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           + RLFE++   D    N MI+ Y + G  E AL  FQ M R ++ P E T+  VLS+   
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 360 P-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
              +E G+   S     G  SN  + ++L++MY+K G +D + ++F  + ++D++SWN +
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G +      E L +F ++ +  + P+ +T  ++L AC Y G +D G  + + + +++ 
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFL 396

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTM-PFQPGCSIWESILRASAIYGDVKLTENV 537
            +     +  +ID+  + G +  A  + + M P   G   W +++   A++G   +   +
Sbjct: 397 GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS--WNAMISGLAMHGHANMALEL 454

Query: 538 AERMMD 543
             +M D
Sbjct: 455 FRQMRD 460


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 165/538 (30%), Positives = 284/538 (52%), Gaps = 20/538 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A +VFDE+   D VS+N+MI GY      + ++ MF +  L   +P   T    +S+V  
Sbjct: 261 ARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLT----VSSVLR 315

Query: 160 ACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           AC         K I+  M+++G  L + V  N LID+Y K G +  A  VF +ME  D +
Sbjct: 316 ACGHLRDLSLAKYIYNYMLKAGFVLESTV-RNILIDVYAKCGDMITARDVFNSMECKDTV 374

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWNS+ISG   SG    A+  F  M       D  T  ++I+  T+L +L  GK + +  
Sbjct: 375 SWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNG 434

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K G   +  V +A ID+++KC  + DS+++F  +   D    N +IS   R+G     L
Sbjct: 435 IKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGL 494

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP----IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           ++   M + ++ P    ++  L ++P    +     G + H   ++ G++S   + ++L+
Sbjct: 495 QVTTQMRKSEVVPD---MATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALI 551

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           EMY+K G +++S+ +F ++ +RD+V+W  ++      G   + L+ F ++ + G+ PD +
Sbjct: 552 EMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSV 611

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              A++ AC++ G VD+G+  F  MK  Y + P  EHYAC++DLL ++ ++ KA +    
Sbjct: 612 VFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQA 671

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP +P  SIW S+LRA    GD++  E V+ R+++L    P    L + AYA   +W+ +
Sbjct: 672 MPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKV 731

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             ++K ++   I K  G SWI +   ++ F++G+      + IY  L +L   M  EG
Sbjct: 732 SLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEG 789



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 222/457 (48%), Gaps = 38/457 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L+++ V+    ++ S +I  C      +    ++  +  +GF +  ++GN  +D+YSR G
Sbjct: 97  LRESKVSPDKYTFPS-VIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMG 155

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                           L  A +VFDE+P  D+VSWNS+ISGY+S
Sbjct: 156 L-------------------------------LTRARQVFDEMPVRDLVSWNSLISGYSS 184

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVV 181
            GY + ALE++ +++   + P  FT S +L    +      G+ +HG  ++S    S VV
Sbjct: 185 HGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKS-GVNSVVV 243

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N L+ MY K      A  VF  M+  D +S+N++I G       E ++  F       
Sbjct: 244 VNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQ 302

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           + PD  T+S V+ AC  LR+L   K ++   +K GF+  S V +  ID+++KC  +  + 
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITAR 362

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIP 360
            +F  ++  D    N +IS Y + G    A++LF++M+  + +    T   ++S S  + 
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLA 422

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            ++ G   HS  IKSG   +  V+++L++MYAK G +  S +IF  +   D V+WNT++ 
Sbjct: 423 DLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVIS 482

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
              + G  A  L V  ++ +  + PD  T    L  C
Sbjct: 483 ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC 519



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 255/551 (46%), Gaps = 55/551 (9%)

Query: 19  SQLIDRCLSFKS-FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           S  I R LS  S  +  + IH  +  LG ++  +   + +D YS F      L +F  + 
Sbjct: 7   SPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVS 66

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                                         P  +V  WNS+I  ++  G    ALE + K
Sbjct: 67  ------------------------------PAKNVYLWNSIIRAFSKNGLFPEALEFYGK 96

Query: 138 MQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           ++   V P  +TF  ++   +    A  G  ++  ++  G   S++ +GN+L+DMY ++G
Sbjct: 97  LRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFE-SDLFVGNALVDMYSRMG 155

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +L  A  VF  M   D++SWNSLISG  + GY E AL+ ++ ++ S   PD +T+S V+ 
Sbjct: 156 LLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLP 215

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A   L  + +G+ +   ++K G  S  +V +  + ++ K  R  D+ R+F+++D  D   
Sbjct: 216 AFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVS 275

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAI 373
            N MI  Y +    E ++ +F   L +  +P   T+S VL +   +  +      ++  +
Sbjct: 276 YNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYML 334

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+GF   + V + L+++YAK G + ++ ++F  ++ +D VSWN+I+ G  Q+G   E + 
Sbjct: 335 KAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMK 394

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI---- 489
           +F+ ++      D IT   ++L        D   L F       G+  G     CI    
Sbjct: 395 LFKMMMIMEEQADHITY--LMLISVSTRLAD---LKFGKGLHSNGIKSG----ICIDLSV 445

Query: 490 ----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
               ID+  + G++G ++ I S+M      + W +++ A   +GD      V  +M   +
Sbjct: 446 SNALIDMYAKCGEVGDSLKIFSSMGTGDTVT-WNTVISACVRFGDFATGLQVTTQMRKSE 504

Query: 546 LPSPLPYSLLT 556
           +   +   L+T
Sbjct: 505 VVPDMATFLVT 515



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 195/441 (44%), Gaps = 40/441 (9%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   S ++  C   +    AK I+ ++ K GF   + + N  +D+Y++ G       
Sbjct: 304 KPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARD 363

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F+ +  K+ +SWN  + G ++S +L  A+K+F                           
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF--------------------------- 396

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLID 188
            +M   M+ Q       T+ +L+S  +       GK +H + I+SG+ + ++ + N+LID
Sbjct: 397 -KMMMIMEEQA---DHITYLMLISVSTRLADLKFGKGLHSNGIKSGICI-DLSVSNALID 451

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  +  +F +M   D ++WN++IS C   G     L     MR S   PD  T
Sbjct: 452 MYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMAT 511

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
             + +  C  L     GK++    ++ G+ S   + +A I+++SKC  LE+S R+FE++ 
Sbjct: 512 FLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS 571

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-S 366
           R D      MI  YG YG GE ALE F  M +  I P       ++ +      V+ G +
Sbjct: 572 RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLA 631

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQN 425
            F  M      D      + ++++ +++  I  + E    +  K D   W +++     +
Sbjct: 632 CFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691

Query: 426 GRAAETLDVFEELLEEGLPPD 446
           G       V   ++E  L PD
Sbjct: 692 GDMETAERVSRRIIE--LNPD 710



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 54/253 (21%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  +    K IH  L + G+ +   +GN  +++YS+ G                    
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGC------------------- 559

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L+ + +VF+ +   DVV+W  MI  Y   G  + ALE F+ M+  G+ 
Sbjct: 560 ------------LENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIV 607

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLS----LSNVVLGNSLIDMYGKLGVLYYAF 200
           P    F  ++   S        H  ++  GL+    +      + +I+ Y  +  L    
Sbjct: 608 PDSVVFIAIIYACS--------HSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRS 659

Query: 201 GVFLNMEEL--------DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
                 EE         D   W S++  C  SG  E A  +  S R    +PD+   SI+
Sbjct: 660 QKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETA--ERVSRRIIELNPDDPGYSIL 717

Query: 253 I-NACTKLRNLDK 264
             NA   LR  DK
Sbjct: 718 ASNAYAALRKWDK 730


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 166/540 (30%), Positives = 295/540 (54%), Gaps = 12/540 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF-SKMQLQGVRPSGFTFSILL 154
           +++++ +VFD   E ++  WN+MI  Y        ++E+F   +  + +     T+ +  
Sbjct: 266 DIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAA 325

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S VS+      G+Q HG + ++   L  +V+ NSL+ MY + G ++ +FGVFL+M E D+
Sbjct: 326 SAVSALQQVELGRQFHGFVSKNFRELP-IVIVNSLMVMYSRCGSVHKSFGVFLSMRERDV 384

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWN++IS    +G  +  L   Y M+  G+  D  T++ +++A + LRN + GKQ  A 
Sbjct: 385 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAF 444

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGFGE 329
            ++ G     +  S  ID++SK   +  S +LFE       D A  N MIS Y + G  E
Sbjct: 445 LIRQGIQFEGMN-SYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTE 503

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
               +F+ ML ++IRP   T++ +L +   I  V+ G Q H  +I+   D N  VAS+L+
Sbjct: 504 KTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALV 563

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G+I  + ++F +  +R+ V++ T+++G  Q+G     + +F  + E G+ PD I
Sbjct: 564 DMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAI 623

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  AVL AC+Y G +D+G+ +F  M+E Y + P  EHY CI D+L + G++ +A +    
Sbjct: 624 TFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKG 683

Query: 509 MPFQPGCS-IWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--YSLLTQAYAMRGRW 565
           +  +   + +W S+L +  ++G+++L E V+ER+              LL+  YA   +W
Sbjct: 684 LGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKW 743

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           +++ +V++ MR+ G+ K  G S I I   +  F + + +H    +IY V+  L  +M  +
Sbjct: 744 KSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGD 803



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 190/386 (49%), Gaps = 16/386 (4%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG--VRP 145
           L  + +  N   A ++FD IP+P  V WN++I G+        AL  +S+M+        
Sbjct: 46  LSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNC 105

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF-- 200
             +T+S  L   +   +   GK +H  +IR  L  S+ V+ NSL++MY         F  
Sbjct: 106 DAYTYSSTLKACAETKNLKAGKAVHCHLIRC-LQNSSRVVHNSLMNMYVSCLNAPDCFEY 164

Query: 201 ----GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
                VF NM   ++++WN+LIS    +G    A  QF  M      P   +   V  A 
Sbjct: 165 DVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAV 224

Query: 257 TKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +  R++ K    + L +K+G  ++ +  V+S+ I ++++   +E S R+F+     +  V
Sbjct: 225 SISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEV 284

Query: 315 INVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMA 372
            N MI  Y +      ++ELF + +  ++I   E T     S++  +  VE G QFH   
Sbjct: 285 WNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFV 344

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
            K+  +   V+ +SLM MY++ GS+  S  +F+ + +RD+VSWNT++    QNG   E L
Sbjct: 345 SKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGL 404

Query: 433 DVFEELLEEGLPPDRITLAAVLLACN 458
            +  E+ ++G   D IT+ A+L A +
Sbjct: 405 MLVYEMQKQGFKIDYITVTALLSAAS 430



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 233/510 (45%), Gaps = 61/510 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C   K+    K +H HL +   N+   + N  +++Y                  
Sbjct: 111 SSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYV----------------- 153

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            +C++   C          D   KVFD +   +VV+WN++IS Y   G +  A   F  M
Sbjct: 154 -SCLNAPDCFE-------YDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIM 205

Query: 139 QLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLS-LSNVVLGNSLIDMYGKLG 194
               V+PS  +F  +   VS   S       +G M++ G   + ++ + +S I MY +LG
Sbjct: 206 MRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELG 265

Query: 195 VLYYAFGVFLNMEELDIISWNSLI-----SGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
            +  +  VF +  E +I  WN++I     + C      EL L+   S        DE T 
Sbjct: 266 DIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESI-ELFLEAIGSKEIVS---DEVTY 321

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNS------IVLSATIDLFSKCNRLEDSVRL 303
            +  +A + L+ ++ G+Q        GF+S +      +++++ + ++S+C  +  S  +
Sbjct: 322 LLAASAVSALQQVELGRQFH------GFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGV 375

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPV 362
           F  +   D    N MIS + + G  +  L L   M ++  +    T++ +LS+   +   
Sbjct: 376 FLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNK 435

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIMM 420
           E G Q H+  I+ G      + S L++MY+K+G I  S ++F      +RD  +WN+++ 
Sbjct: 436 EIGKQTHAFLIRQGIQFEG-MNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMIS 494

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY--- 477
           G TQNG   +T  VF ++LE+ + P+ +T+A++L AC+  G VD G  +      +Y   
Sbjct: 495 GYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQ 554

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
            V       + ++D+  +AG +  A D+ S
Sbjct: 555 NVFVA----SALVDMYSKAGAIKYAEDMFS 580



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 102/269 (37%), Gaps = 68/269 (25%)

Query: 1   MSSYLKKAHVNKASLSY--------------CSQLIDRCLSFKSFDFAKTIHGHLFKLGF 46
           +S Y +  H  K  L +               + ++  C    S D  K +HG   +   
Sbjct: 493 ISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYL 552

Query: 47  NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           + + ++ +  +D+YS+ G                                +  A  +F +
Sbjct: 553 DQNVFVASALVDMYSKAGA-------------------------------IKYAEDMFSQ 581

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166
             E + V++ +MI GY   G  + A+ +F  MQ  G++P   TF  +LS  S        
Sbjct: 582 TKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACS-------- 633

Query: 167 HGSMIRSGLSL-------SNVVLGNS----LIDMYGKLGVLYYAFGVFLNMEELDIIS-- 213
           +  +I  GL +        N+   +     + DM G++G +  A+     + E   I+  
Sbjct: 634 YSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAEL 693

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGY 242
           W SL+  C    +GEL L +  S R + +
Sbjct: 694 WGSLLGSC--KLHGELELAETVSERLAKF 720


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 169/532 (31%), Positives = 283/532 (53%), Gaps = 9/532 (1%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS--SA 160
           +F +I +P+V SWN M   Y+   +    + +++ M   G  P  ++F  +L   +  S 
Sbjct: 83  LFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSL 142

Query: 161 CH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL--DIISWNSL 217
            H G++IH S ++ G+ L +V + N+LI  +   G +  A  VF  +  L  D++SWNS+
Sbjct: 143 LHKGREIHSSTLKLGVHL-DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSM 201

Query: 218 ISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           ISG   S   ELAL  F+ +   G  SPDE T+   ++ C +L  LD GK++  L    G
Sbjct: 202 ISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSG 261

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           F+ +  V S+ ID++SKC ++ED+ ++F+++   +      MI+ Y +    + A+ELF+
Sbjct: 262 FVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFR 321

Query: 337 LMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M          T++CVLS+      +  G   H    ++  + +    ++L+ MY+K G
Sbjct: 322 EMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCG 381

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVL 454
            I  + EIF  L + D+ SW+ ++ GL  NG + + L +F ++ +   + P+ IT   VL
Sbjct: 382 DIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVL 441

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            ACN+GGFVDKG+  F+AM + Y + PG EHY C++DLL +A  L +A     T+P QP 
Sbjct: 442 CACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPD 501

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             IW S+L A   +G+++L E  A+++ +L+        LL+  YA   RW  + RV+K 
Sbjct: 502 VVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKD 561

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           M    I K  GCS++ I   ++     +  H     IY  +  +   ++ +G
Sbjct: 562 MATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQSKG 613



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 41/342 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-- 78
           ++  C         + IH    KLG +   ++ N  +  +S  G  +    +FD +P   
Sbjct: 133 VLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALV 192

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI-----PEPDVVSWNSMISGYASCGYSDYALE 133
           ++ +SWN  + G L+S   + ALKVF E+       PD V   +++S  + CG       
Sbjct: 193 RDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEV---TLVSALSVCG------- 242

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
              ++ L  +                   GK+IHG    SG  L +V +G+SLIDMY K 
Sbjct: 243 ---RLGLLDL-------------------GKKIHGLFTGSGFVL-DVFVGSSLIDMYSKC 279

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  VF  +   + + W S+I+G   S   + A++ F  M+  G++ D  TI+ V+
Sbjct: 280 GQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVL 339

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           +AC     L +G+ +     +     +    +A I ++SKC  ++ ++ +F  L + D  
Sbjct: 340 SACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIF 399

Query: 314 VINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVL 354
             + +IS     G  + AL LF Q+ +  DIRP E T   VL
Sbjct: 400 SWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVL 441



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 142/338 (42%), Gaps = 38/338 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      D  K IHG     GF    ++G+  +D+YS+ G  +D  ++FD IP +N + W
Sbjct: 241 CGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCW 300

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
              + G  +SD       +F E                        A+E+F +MQ+ G  
Sbjct: 301 TSMIAGYAQSD-------LFKE------------------------AIELFREMQIGGFA 329

Query: 145 PSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               T + +LS      +   G+ IH    R+ + + ++   N+LI MY K G +  A  
Sbjct: 330 ADAATIACVLSACGHWGALAQGRWIHLYCERNSIEM-DLNARNALIGMYSKCGDIQKALE 388

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLR 260
           +F  + + DI SW+++ISG   +G  + AL  F  M   S   P+E T   V+ AC    
Sbjct: 389 IFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGG 448

Query: 261 NLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +DKG   F    ++  L+  I      +DL  + N L ++ +    L      VI   +
Sbjct: 449 FVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSL 508

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
             +     G + L  F     E++ P       +LS++
Sbjct: 509 -LFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNV 545



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS--STEIFVKLDKRDLVSWNTIMMGLT 423
           +Q  S AI SG   + VV+S L+  Y+ +   D   S  +F ++ K ++ SWN +    +
Sbjct: 45  NQILSHAIASGVFRDPVVSSKLL-YYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYS 103

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           ++   AET+ ++  +L  G  PD  +   VL AC     + KG  + S+
Sbjct: 104 RSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSS 152


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 186/607 (30%), Positives = 313/607 (51%), Gaps = 44/607 (7%)

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
           L LF   P+    S  + L    K+++L  A  VFD+IP  +  S+N+M+  Y+      
Sbjct: 50  LILFSVTPENYLASKLVALYS--KTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHG 107

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSS-----ACHGKQIHGSMIRSGLSLSNVVLGN 184
            AL++FS +    +  +  + + LL ++SS        GK++HG ++R+G   ++V + N
Sbjct: 108 DALDLFSSLASSNL-VNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFD-ADVFVEN 165

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYS 243
           +LI  Y K   L  +  VF  M + D++SWNS+ISG    G  E     +  M  +SG+ 
Sbjct: 166 ALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFR 225

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+  T+  V+ AC + ++L  G +V    V      +  V +A I L++KC  L+ +  L
Sbjct: 226 PNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYAREL 285

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM------------------------- 338
           F+++   D      +IS    +G+ + +LELF+ M                         
Sbjct: 286 FDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVL 345

Query: 339 --LRE----DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
             +RE      RP   TLS VLS+I     ++ G + HS AIK G+  N  VA+++++MY
Sbjct: 346 DLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMY 405

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK+G +  +  +F +   R LV W  I+     +G A   L +F E+L++G+ PD +T  
Sbjct: 406 AKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFT 465

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           AVL AC + G VDK   +F +M ++YG+ P  EHYAC++  L +A +L +A +  S MP 
Sbjct: 466 AVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPI 525

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W ++L  ++I  DV+L ++V + + +++  +   Y ++   Y+  GRW+    V
Sbjct: 526 EPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEV 585

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
           ++ M K G+ K+ G SWI     + +F A +      ++I+++L+ L   M DEG V   
Sbjct: 586 RERMNKVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEIHVILKGLLGLMRDEGKVLQ- 644

Query: 632 CDKLDVE 638
            D LD E
Sbjct: 645 -DMLDEE 650



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 115/210 (54%), Gaps = 5/210 (2%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           +++  T+LR   + KQ+ A  +       + + S  + L+SK N L  +  +F+Q+   +
Sbjct: 30  LLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKN 89

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV---LSSIPIPPVEHGSQF 368
               N M+ +Y  +     AL+LF  +   ++     +++C+   LSS  +  V+ G + 
Sbjct: 90  TFSYNAMLISYSLHNRHGDALDLFSSLASSNL-VNNISITCLLKSLSSFTLSDVKLGKEV 148

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H   +++GFD++  V ++L+  Y+K   +D S ++F ++ KRD+VSWN+++ G +Q G  
Sbjct: 149 HGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLY 208

Query: 429 AETLDVFEELLE-EGLPPDRITLAAVLLAC 457
            +   ++ E+++  G  P+ +T+ +VL AC
Sbjct: 209 EDCKTLYREMVDFSGFRPNGVTVVSVLQAC 238



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F S    K IH +  K+G++ + Y+    +D+Y++ G      ++FD+   ++ + W   
Sbjct: 373 FSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAI 432

Query: 88  LRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQG 142
           +       + + AL +F E+     +PD V++ ++++  A CG  D A E+F  M +  G
Sbjct: 433 ISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYG 492

Query: 143 VRP 145
           ++P
Sbjct: 493 IQP 495


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 301/605 (49%), Gaps = 58/605 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H   ++ G  A  ++GN  +  YSR G+                             
Sbjct: 151 RQLHALAWRSGLAADVFVGNALVTAYSRGGS----------------------------- 181

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCG-YSDYALEMFSKMQLQG-VRPSGFTFSI 152
             L  A  VFD++P  D+VSWN++I G A  G      + +F +M   G V+P      I
Sbjct: 182 --LGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPD----RI 235

Query: 153 LLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
            + +V  AC G       +Q+HG  ++ G+    V +GN L+ MY K G    A  +F  
Sbjct: 236 SVCSVIPACGGEGKLELGRQVHGFAVKLGVE-GYVSIGNVLVAMYYKCGAPGSARRLFDA 294

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M E D++SW + IS       GE AL  F  MR  G  P+E T   +++A          
Sbjct: 295 MSERDVVSWTTAISM-----DGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGA 349

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           + V A  +K      +   ++ I +++K  R++D+  +F+ + R +    N +IS Y + 
Sbjct: 350 QMVHAACLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQN 409

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP---IPPVEHGSQFHSMAIKSGFDSNAV 382
           G    ALELF  M R  + P E T + VLS++       + +G  +HS A+  GF  +  
Sbjct: 410 GRCNDALELFSSMAR-CLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEY 468

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           VA +L++MYAK G+++ S + F + ++R L++W  I+    ++G     + +F ++   G
Sbjct: 469 VAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSG 528

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + PD + L AVL AC YGG VD G  +F +M  + GV    EHY+C++D+L +AG+L +A
Sbjct: 529 VAPDGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEA 588

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
            ++   MP  P  S  +S+L A  I+GD ++ E +A  + + +      Y LL+  YA  
Sbjct: 589 EELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADV 648

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWI----GIKNRIYTFNAGELQHHGGQKIYLVLRLL 618
           G W+ + +V++ MR  G+ K  G SW+    G    ++ F++ +  H   ++IY V  +L
Sbjct: 649 GDWDGVAKVRRKMRDRGVKKEIGFSWVDAGAGEALHLHKFSSDDTTHPRTEEIYAVADVL 708

Query: 619 TWEME 623
            WEM+
Sbjct: 709 GWEMK 713



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/467 (25%), Positives = 204/467 (43%), Gaps = 48/467 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L+   V    +S CS +I  C      +  + +HG   KLG   +  +GN  + +Y + G
Sbjct: 225 LRDGDVQPDRISVCS-VIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCG 283

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                 +LFD + ++                               DVVSW + IS    
Sbjct: 284 APGSARRLFDAMSER-------------------------------DVVSWTTAIS---- 308

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK---QIHGSMIRSGLSLSNVV 181
               + AL +F+ M+  GV P+  TF  L+S + + C  +    +H + +++ +S     
Sbjct: 309 -MDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVS-GEAA 366

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             NSLI MY K   +  A  VF  M   +II+WN++ISG   +G    AL+ F SM    
Sbjct: 367 ASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARC- 425

Query: 242 YSPDEYTISIVINACTKLRNLDK--GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
            +P+E T + V++A T +  +    G+   + ++ +GF  +  V  A ID+++K   LE+
Sbjct: 426 LTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEE 485

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           S + F + ++        +IS   R+G     + LF  M R  + P    L  VL++   
Sbjct: 486 SRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRY 545

Query: 360 PP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
              V+ G   F SMA   G +      S +++M  + G +  + E+ +++     VS   
Sbjct: 546 GGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQ 605

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            ++G  +    AE  +    +L E  P +  + A VLL+  Y    D
Sbjct: 606 SLLGACRIHGDAEIGERIARILTEKEPTE--SGAYVLLSNIYADVGD 650



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 24/322 (7%)

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           V P  F+ ++  S  +S      +H   + +GL     V  NSL   Y K G    A GV
Sbjct: 34  VNPIAFSAAVRASDPASL---PALHAVAVTTGLHGFAAVT-NSLAARYAKTGSFPSAVGV 89

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALD-QFYSMRYSGYSPDEYTISIVINACTKLRN 261
           F      D+ S+N+++S   +      ALD   + +R     PD  T ++ ++       
Sbjct: 90  FAAARARDVSSYNTILSAFPDPAE---ALDFASWMLRSGAVRPDAVTCTVALSLAAGRGE 146

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
               +Q+ AL+ + G  ++  V +A +  +S+   L ++  +F+ +   D    N +I  
Sbjct: 147 GFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICG 206

Query: 322 YGRYG--FGEVALELFQLMLRE-DIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIK 374
             + G    EV + +F  MLR+ D++P   +   V S IP       +E G Q H  A+K
Sbjct: 207 LAQDGDCPAEV-IGVFLRMLRDGDVQPDRIS---VCSVIPACGGEGKLELGRQVHGFAVK 262

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G +    + + L+ MY K G+  S+  +F  + +RD+VSW T    ++ +G  A TL  
Sbjct: 263 LGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTT---AISMDGEDALTL-- 317

Query: 435 FEELLEEGLPPDRITLAAVLLA 456
           F  +  +G+PP+ +T  A++ A
Sbjct: 318 FNGMRRDGVPPNEVTFVALMSA 339



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 118/253 (46%), Gaps = 24/253 (9%)

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
           I  +A  +  +      + A++V  G    + V ++    ++K      +V +F      
Sbjct: 37  IAFSAAVRASDPASLPALHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVGVFAAARAR 96

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGS--- 366
           D +  N ++S +        AL+    MLR   +RP   T +  LS      +  G    
Sbjct: 97  DVSSYNTILSAFPDPA---EALDFASWMLRSGAVRPDAVTCTVALS------LAAGRGEG 147

Query: 367 ----QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
               Q H++A +SG  ++  V ++L+  Y++ GS+  +  +F  +  RDLVSWN ++ GL
Sbjct: 148 FLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGL 207

Query: 423 TQNGR-AAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
            Q+G   AE + VF  +L +G + PDRI++ +V+ AC   G ++ G  V       + V 
Sbjct: 208 AQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHG-----FAVK 262

Query: 481 PGEEHYACIIDLL 493
            G E Y  I ++L
Sbjct: 263 LGVEGYVSIGNVL 275



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 12/167 (7%)

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H++A+ +G    A V +SL   YAKTGS  S+  +F     RD+ S+NTI+        
Sbjct: 54  LHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVGVFAAARARDVSSYNTILSAFPD--- 110

Query: 428 AAETLDVFEELLEEG-LPPDRITLAAVL-LACNYGGFVDKGMLV--FSAMKEEYGVMPGE 483
            AE LD    +L  G + PD +T    L LA   G    +G LV    A+    G+    
Sbjct: 111 PAEALDFASWMLRSGAVRPDAVTCTVALSLAAGRG----EGFLVRQLHALAWRSGLAADV 166

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
                ++    + G LG+A  +   MP +   S W +++   A  GD
Sbjct: 167 FVGNALVTAYSRGGSLGEARSVFDDMPARDLVS-WNALICGLAQDGD 212


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/540 (30%), Positives = 282/540 (52%), Gaps = 7/540 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D+ ++A  V    P  +VVSW S+ISG A  G+   AL  F +M+ +GV P+ FTF  
Sbjct: 4   KLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPC 63

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
               V+S      GKQIH   ++ G  L +V +G S  DMY K  +   A  +F  + E 
Sbjct: 64  AFKAVASLRLPVTGKQIHALAVKCGRIL-DVFVGCSAFDMYCKTRLRDDARKLFDEIPER 122

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ +WN+ IS     G    A++ F   R     P+  T    +NAC+   +L+ G Q+ 
Sbjct: 123 NLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLH 182

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L ++ GF ++  V +  ID + KC ++  S  +F ++   +      +++ Y +    E
Sbjct: 183 GLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDE 242

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  L+    ++ +  ++F +S VLS+   +  +E G   H+ A+K+  +    V S+L+
Sbjct: 243 KASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALV 302

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL--PPD 446
           +MY K G I+ S + F ++ +++LV+ N+++ G    G+    L +FEE+   G    P+
Sbjct: 303 DMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPN 362

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T  ++L AC+  G V+ GM +F +M+  YG+ PG EHY+CI+D+L +AG + +A +  
Sbjct: 363 YMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFI 422

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP QP  S+W ++  A  ++G  +L    AE +  L       + LL+  +A  GRW 
Sbjct: 423 KKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWA 482

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V++ ++  GI K  G SWI +KN+++ F A +  H   ++I   L  L  EME  G
Sbjct: 483 EANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAG 542



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 180/414 (43%), Gaps = 40/414 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    K G     ++G    D+Y +    DD  +LFDEIP++N              
Sbjct: 78  KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN-------------- 123

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            + +WN+ IS   + G    A+E F + +     P+  TF   L
Sbjct: 124 -----------------LETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFL 166

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S   H   G Q+HG ++RSG   ++V + N LID YGK   +  +  +F  M   + 
Sbjct: 167 NACSDWLHLNLGMQLHGLVLRSGFD-TDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 225

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW SL++    +   E A   +   R       ++ IS V++AC  +  L+ G+ + A 
Sbjct: 226 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH 285

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK        V SA +D++ KC  +EDS + F+++   +    N +I  Y   G  ++A
Sbjct: 286 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA 345

Query: 332 LELFQLMLREDIRPTE--FTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSL 387
           L LF+ M      PT    T   +LS+      VE+G + F SM    G +  A   S +
Sbjct: 346 LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCI 405

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
           ++M  + G ++ + E   K+  +  +S W  +      +G+    L   E L +
Sbjct: 406 VDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFK 459



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 139/320 (43%), Gaps = 53/320 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S+++C+  ++ C  +   +    +HG + + GF+    + N  +D Y +         +F
Sbjct: 159 SITFCA-FLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIF 217

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            E+  KN                                VSW S+++ Y      + A  
Sbjct: 218 TEMGTKN-------------------------------AVSWCSLVAAYVQNHEDEKASV 246

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSL 186
           ++ + +   V  S F    ++S+V SAC        G+ IH   +++ +  + + +G++L
Sbjct: 247 LYLRSRKDIVETSDF----MISSVLSACAGMAGLELGRSIHAHAVKACVERT-IFVGSAL 301

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM--RYSGYSP 244
           +DMYGK G +  +   F  M E ++++ NSLI G  + G  ++AL  F  M  R  G +P
Sbjct: 302 VDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTP 361

Query: 245 DEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           +  T   +++AC++   ++ G ++F ++    G    +   S  +D+  +   +E +   
Sbjct: 362 NYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEF 421

Query: 304 FEQLDRWDYAVINVMISTYG 323
            +++       I   IS +G
Sbjct: 422 IKKMP------IQPTISVWG 435



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 41/221 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +  ++IH H  K       ++G+  +D+Y + G  +D  Q FDE+P+
Sbjct: 264 SSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPE 323

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI------PEPDVVSWNSMISGYASCGYSDYAL 132
           KN ++ N  + G      +D AL +F+E+      P P+ +++ S++S  +  G  +  +
Sbjct: 324 KNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM 383

Query: 133 EMFSKMQ-LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           ++F  M+   G+ P    +S                                  ++DM G
Sbjct: 384 KIFDSMRSTYGIEPGAEHYSC---------------------------------IVDMLG 410

Query: 192 KLGVLYYAFGVFLNMEELDIIS-WNSLISGCFNSGYGELAL 231
           + G++  A+     M     IS W +L + C   G  +L L
Sbjct: 411 RAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGL 451



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           MY+K    +S+  +      R++VSW +++ GL QNG  +  L  F E+  EG+ P+  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 450 LAAVLLA 456
                 A
Sbjct: 61  FPCAFKA 67


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/540 (30%), Positives = 282/540 (52%), Gaps = 7/540 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D+ ++A  V    P  +VVSW S+ISG A  G+   AL  F +M+ +GV P+ FTF  
Sbjct: 54  KLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPC 113

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
               V+S      GKQIH   ++ G  L +V +G S  DMY K  +   A  +F  + E 
Sbjct: 114 AFKAVASLRLPVTGKQIHALAVKCGRIL-DVFVGCSAFDMYCKTRLRDDARKLFDEIPER 172

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ +WN+ IS     G    A++ F   R     P+  T    +NAC+   +L+ G Q+ 
Sbjct: 173 NLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLH 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L ++ GF ++  V +  ID + KC ++  S  +F ++   +      +++ Y +    E
Sbjct: 233 GLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDE 292

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A  L+    ++ +  ++F +S VLS+   +  +E G   H+ A+K+  +    V S+L+
Sbjct: 293 KASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALV 352

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL--PPD 446
           +MY K G I+ S + F ++ +++LV+ N+++ G    G+    L +FEE+   G    P+
Sbjct: 353 DMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPN 412

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T  ++L AC+  G V+ GM +F +M+  YG+ PG EHY+CI+D+L +AG + +A +  
Sbjct: 413 YMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFI 472

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MP QP  S+W ++  A  ++G  +L    AE +  L       + LL+  +A  GRW 
Sbjct: 473 KKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWA 532

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V++ ++  GI K  G SWI +KN+++ F A +  H   ++I   L  L  EME  G
Sbjct: 533 EANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAG 592



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 180/414 (43%), Gaps = 40/414 (9%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K IH    K G     ++G    D+Y +    DD  +LFDEIP++N              
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN-------------- 173

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            + +WN+ IS   + G    A+E F + +     P+  TF   L
Sbjct: 174 -----------------LETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFL 216

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           +  S   H   G Q+HG ++RSG   ++V + N LID YGK   +  +  +F  M   + 
Sbjct: 217 NACSDWLHLNLGMQLHGLVLRSGFD-TDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNA 275

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SW SL++    +   E A   +   R       ++ IS V++AC  +  L+ G+ + A 
Sbjct: 276 VSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAH 335

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +VK        V SA +D++ KC  +EDS + F+++   +    N +I  Y   G  ++A
Sbjct: 336 AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMA 395

Query: 332 LELFQLMLREDIRPTE--FTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVASSL 387
           L LF+ M      PT    T   +LS+      VE+G + F SM    G +  A   S +
Sbjct: 396 LALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCI 455

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
           ++M  + G ++ + E   K+  +  +S W  +      +G+    L   E L +
Sbjct: 456 VDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFK 509



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 145/303 (47%), Gaps = 1/303 (0%)

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           + SS   G+ +H  ++++  S     L N LI+MY KL     A  V       +++SW 
Sbjct: 18  SASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWT 77

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           SLISG   +G+   AL +F+ MR  G  P+++T      A   LR    GKQ+ AL+VK 
Sbjct: 78  SLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKC 137

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G + +  V  +  D++ K    +D+ +LF+++   +    N  IS     G    A+E F
Sbjct: 138 GRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAF 197

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
               R D  P   T    L++      +  G Q H + ++SGFD++  V + L++ Y K 
Sbjct: 198 IEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKC 257

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
             I SS  IF ++  ++ VSW +++    QN    +   ++    ++ +      +++VL
Sbjct: 258 KQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVL 317

Query: 455 LAC 457
            AC
Sbjct: 318 SAC 320



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 139/320 (43%), Gaps = 53/320 (16%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S+++C+  ++ C  +   +    +HG + + GF+    + N  +D Y +         +F
Sbjct: 209 SITFCA-FLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIF 267

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            E+  KN                                VSW S+++ Y      + A  
Sbjct: 268 TEMGTKN-------------------------------AVSWCSLVAAYVQNHEDEKASV 296

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSL 186
           ++ + +   V  S F    ++S+V SAC        G+ IH   +++ +  + + +G++L
Sbjct: 297 LYLRSRKDIVETSDF----MISSVLSACAGMAGLELGRSIHAHAVKACVERT-IFVGSAL 351

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM--RYSGYSP 244
           +DMYGK G +  +   F  M E ++++ NSLI G  + G  ++AL  F  M  R  G +P
Sbjct: 352 VDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTP 411

Query: 245 DEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           +  T   +++AC++   ++ G ++F ++    G    +   S  +D+  +   +E +   
Sbjct: 412 NYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEF 471

Query: 304 FEQLDRWDYAVINVMISTYG 323
            +++       I   IS +G
Sbjct: 472 IKKMP------IQPTISVWG 485



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 41/221 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +  ++IH H  K       ++G+  +D+Y + G  +D  Q FDE+P+
Sbjct: 314 SSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPE 373

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEI------PEPDVVSWNSMISGYASCGYSDYAL 132
           KN ++ N  + G      +D AL +F+E+      P P+ +++ S++S  +  G  +  +
Sbjct: 374 KNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM 433

Query: 133 EMFSKMQ-LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           ++F  M+   G+ P    +S                                  ++DM G
Sbjct: 434 KIFDSMRSTYGIEPGAEHYSC---------------------------------IVDMLG 460

Query: 192 KLGVLYYAFGVFLNMEELDIIS-WNSLISGCFNSGYGELAL 231
           + G++  A+     M     IS W +L + C   G  +L L
Sbjct: 461 RAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGL 501


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/696 (26%), Positives = 318/696 (45%), Gaps = 110/696 (15%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N   L + + L+ +C        ++ IH  +   G +   +L  R + +Y+ FG   D  
Sbjct: 30  NNDVLDFFNDLLQQC---SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQ 86

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           ++F+  P +       C   LL                      WNS++    + GY + 
Sbjct: 87  RVFEVSPIE-------CFSNLLL---------------------WNSILRANVAHGYCEE 118

Query: 131 ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           ALE++ +M+  GV   GFTF +++   + + S    + +HG ++  G    N+ +GN L+
Sbjct: 119 ALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW-NLHVGNELM 177

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISG------CFNS----------------- 224
            MYGK+G +  A  VF  M     +SWN+++SG      C  +                 
Sbjct: 178 GMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLV 237

Query: 225 ------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
                       G     ++ F  MR  G       +++V++    L   D+GK +    
Sbjct: 238 TWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYV 297

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF----- 327
           VK GF +   V ++ I L+ K   +  +  LF ++   +    N +IS+Y   G+     
Sbjct: 298 VKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAF 357

Query: 328 ----------------------------------GEVALELFQLMLREDIRPTEFTLSCV 353
                                             GE ALELF+ M    ++    T++ V
Sbjct: 358 AIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417

Query: 354 LS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LS    +  +  G + H   ++S  D N +V + L+ MY K+GS      +F K++ +DL
Sbjct: 418 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 477

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           +SWNT++ G   +G     +  F++++++G  PD +T  AVL AC++ G V +G  +F  
Sbjct: 478 ISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDK 537

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M +E+ V P  EHYAC++DLL +AG L +A  +  +MP +P   +W ++L +  ++ + +
Sbjct: 538 MIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTE 597

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           + E  A ++ +L       Y LL+  YA  GRWE   +V+   +  G+ K  G SWI +K
Sbjct: 598 VAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVK 657

Query: 593 NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            ++Y F+AG  QH   +++Y +L+ L  +ME EG +
Sbjct: 658 KKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYI 693


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 265/466 (56%), Gaps = 2/466 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ IH + I+S     ++VL N +++MY K G L  A  +F  M   D++SW  LISG  
Sbjct: 124 GRAIH-AHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYS 182

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            SG    AL  F  M + G+ P+E+T+S ++ A     +   G+Q+ A S+K G+  N  
Sbjct: 183 QSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVH 242

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D++++   + ++  +F  L   +    N +I+ + R G GE  + LF  MLR+ 
Sbjct: 243 VGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQG 302

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             PT FT S VL+      +E G   H+  IKSG    A + ++L++MYAK+GSI  + +
Sbjct: 303 FEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKK 362

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F +L K+D+VSWN+I+ G  Q+G  AE L +FE++L+  + P+ IT  +VL AC++ G 
Sbjct: 363 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 422

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           +D+G   F  MK ++ +     H+  ++DLL +AG+L +A      MP +P  ++W ++L
Sbjct: 423 LDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  ++ ++ L    AE++ +L      P+ LL+  YA  GR     +V+K+M+++G+ K
Sbjct: 482 GACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 541

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
              CSW+ I+N ++ F A +  H   ++I  +   ++ ++++ G V
Sbjct: 542 EPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYV 587



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 201/406 (49%), Gaps = 38/406 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S+++++C   +     + IH H+    F     L N  L++Y++ G+             
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS------------- 155

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             L+ A  +FD++P  D+VSW  +ISGY+  G +  AL +F KM
Sbjct: 156 ------------------LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM 197

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P+ FT S LL    T  S  HG+Q+H   ++ G  + NV +G+SL+DMY +   
Sbjct: 198 LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM-NVHVGSSLLDMYARWAH 256

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F ++   +++SWN+LI+G    G GE  +  F  M   G+ P  +T S V+ A
Sbjct: 257 MREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-A 315

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C    +L++GK V A  +K G    + + +  ID+++K   ++D+ ++F +L + D    
Sbjct: 316 CASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSW 375

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N +IS Y ++G G  AL+LF+ ML+  ++P E T   VL++      ++ G  +  +  K
Sbjct: 376 NSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK 435

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
              ++      +++++  + G ++ + +   ++  K     W  ++
Sbjct: 436 HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 4/287 (1%)

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+    S ++N CT LR L +G+ + A      F  + ++L+  +++++KC  LE++  L
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE 363
           F+++   D     V+IS Y + G    AL LF  ML    +P EFTLS +L +    P +
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD 222

Query: 364 -HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            HG Q H+ ++K G+D N  V SSL++MYA+   +  +  IF  L  +++VSWN ++ G 
Sbjct: 223 HHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGH 282

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            + G     + +F ++L +G  P   T ++V LAC   G +++G  V + + +  G  P 
Sbjct: 283 ARKGEGEHVMRLFXQMLRQGFEPTHFTYSSV-LACASSGSLEQGKWVHAHVIKS-GGQPI 340

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                 +ID+  ++G +  A  +   +  Q   S W SI+   A +G
Sbjct: 341 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVS-WNSIISGYAQHG 386


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 168/582 (28%), Positives = 288/582 (49%), Gaps = 40/582 (6%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
            YL    +  Y+R    D  LQLF E+P K+ +SWN  ++G     +L  A K+FDE+PE
Sbjct: 26  VYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPE 85

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGS 169
             VVSW +MI+G+   G  + A  +F KM  +                            
Sbjct: 86  RSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR---------------------------- 117

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL 229
                    ++   NS+I  Y   G +     +F  M   ++ISW S+I G    G  E 
Sbjct: 118 ---------DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEE 168

Query: 230 ALDQFYSMRYSGY--SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
           AL  F  M   G    P   T   VI AC     L +G Q+ A   K+G+  ++ + +A 
Sbjct: 169 ALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAAL 228

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           I  ++ C ++EDS+R+F      +  +   +++ YG     E AL++F  M+RE + P +
Sbjct: 229 ITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQ 288

Query: 348 FTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            + +  L+S   +  ++ G + H+ A+K G +++  V +SL+ MY + G+++    IF +
Sbjct: 289 SSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 348

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + K+++VSWN++++G  Q+G     L  F +++   + PD IT   +L AC++ G   KG
Sbjct: 349 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 408

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
             +F    E        +HYAC++D+L ++G+L +A ++   MP +    +W  +L A  
Sbjct: 409 RCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACT 468

Query: 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586
           ++  +++ E  A+ ++DL+      Y LL+  YA   RW  + R+++ M++ GI K  G 
Sbjct: 469 MHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGR 528

Query: 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           SWI IK     F +G+  H    +IY  L  L  ++++ G V
Sbjct: 529 SWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYV 570



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 55/311 (17%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V   S +YC  +I  C +  +      IH H+FKLG++   Y+    +  Y+     +D 
Sbjct: 183 VKPTSSTYCC-VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDS 241

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA-SCGYS 128
           L++F      N + W                                ++++GY  +C + 
Sbjct: 242 LRVFHGKLHMNVVIW-------------------------------TALVTGYGLNCKHE 270

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVL 182
           D AL++F +M  +GV P+  +F+   S ++S C       G++IH + ++ GL  ++V +
Sbjct: 271 D-ALKVFGEMMREGVLPNQSSFT---SALNSCCGLEALDWGREIHTAAVKLGLE-TDVFV 325

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242
           GNSLI MY + G L     +F  + + +I+SWNS+I GC   G G  AL  F  M  S  
Sbjct: 326 GNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMV 385

Query: 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV------LSATIDLFSKCNR 296
            PDE T + +++AC+      KG+ +F       F  N          +  +D+  +  +
Sbjct: 386 EPDEITFTGLLSACSHSGMSQKGRCLFKY-----FSENKSAEVKLDHYACMVDILGRSGK 440

Query: 297 LEDSVRLFEQL 307
           LE++  L   +
Sbjct: 441 LEEAEELIRNM 451



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 129/291 (44%), Gaps = 20/291 (6%)

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
            R++++  +F+++   D  +  +MI+ Y R    + AL+LF  M  +D+      +    
Sbjct: 9   QRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCF 68

Query: 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
               +        F  M  +S      V  ++++  + + G I+ +  +F K+  RD+ +
Sbjct: 69  DCADLTMAR--KLFDEMPERS-----VVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAA 121

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR--ITLAAVLLACNYGGFVDKGMLVFSA 472
           WN+++ G   NGR  + L +F+E+      P R  I+  +++   +  G  ++ + +F  
Sbjct: 122 WNSMIYGYCCNGRVEDGLRLFQEM------PCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 473 MKE-EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI--YG 529
           M      V P    Y C+I     A  L + + I + + F+ G S +++ + A+ I  Y 
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHV-FKLGYS-FDAYISAALITFYA 233

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           + K  E+           + + ++ L   Y +  + E  ++V   M + G+
Sbjct: 234 NCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGV 284


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 168/613 (27%), Positives = 303/613 (49%), Gaps = 41/613 (6%)

Query: 22  IDRCLSF--KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           + +C ++  KS   AK  H  L +LG +  TYL                           
Sbjct: 5   LKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYL--------------------------- 37

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                N+ LR  L       A  VF + P P++  +N++I G  S      A+ +++ M+
Sbjct: 38  ----INLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMR 93

Query: 140 LQGVRPSGFTFSILLSTVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             G  P  FTF  +L   +   H    G  +H  +I++G    +V +   L+ +Y K G 
Sbjct: 94  QHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDW-DVFVKTGLVCLYSKNGF 152

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSG-YGELALDQFYSMRYSGYSPDEYTISIVIN 254
           L  A  VF  + E +++SW ++I G   SG +GE AL  F  +   G  PD +T+  ++ 
Sbjct: 153 LTDARKVFDEIPEKNVVSWTAIICGYIESGCFGE-ALGLFRGLLEMGLRPDSFTLVRILY 211

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC+++ +L  G+ +     + G + N  V ++ +D+++KC  +E++ R+F+ +   D   
Sbjct: 212 ACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVC 271

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            + +I  Y   G  + AL++F  M RE++RP  + +  V S+   +  +E G+    +  
Sbjct: 272 WSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMD 331

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
              F SN V+ ++L++ YAK GS+  + E+F  + ++D V +N ++ GL   G       
Sbjct: 332 GDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFG 391

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           VF ++++ G+ PD  T   +L  C + G VD G   FS M   + V P  EHY C++DL 
Sbjct: 392 VFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQ 451

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AG L +A D+  +MP +    +W ++L    ++ D +L E+V +++++L+  +   Y 
Sbjct: 452 ARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYV 511

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL+  Y+   RW+   +++  + + G+ K+ GCSW+ +   ++ F  G+  H    KIY 
Sbjct: 512 LLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYE 571

Query: 614 VLRLLTWEMEDEG 626
            L  L  ++ + G
Sbjct: 572 KLESLFKDLREAG 584


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/696 (26%), Positives = 318/696 (45%), Gaps = 110/696 (15%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N   L + + L+ +C        ++ IH  +   G +   +L  R + +Y+ FG   D  
Sbjct: 30  NNDVLDFFNDLLQQC---SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQ 86

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           ++F+  P +       C   LL                      WNS++    + GY + 
Sbjct: 87  RVFEVSPIE-------CFSNLLL---------------------WNSILRANVAHGYCEE 118

Query: 131 ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           ALE++ +M+  GV   GFTF +++   + + S    + +HG ++  G    N+ +GN L+
Sbjct: 119 ALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW-NLHVGNELM 177

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISG------CFNS----------------- 224
            MYGK+G +  A  VF  M     +SWN+++SG      C  +                 
Sbjct: 178 GMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLV 237

Query: 225 ------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
                       G     ++ F  MR  G       +++V++    L   D+GK +    
Sbjct: 238 TWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYV 297

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF----- 327
           VK GF +   V ++ I L+ K   +  +  LF ++   +    N +IS+Y   G+     
Sbjct: 298 VKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAF 357

Query: 328 ----------------------------------GEVALELFQLMLREDIRPTEFTLSCV 353
                                             GE ALELF+ M    ++    T++ V
Sbjct: 358 AIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417

Query: 354 LS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LS    +  +  G + H   ++S  D N +V + L+ MY K+GS      +F K++ +DL
Sbjct: 418 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 477

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           +SWNT++ G   +G     +  F++++++G  PD +T  AVL AC++ G V +G  +F  
Sbjct: 478 ISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDK 537

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M +E+ V P  EHYAC++DLL +AG L +A  +  +MP +P   +W ++L +  ++ + +
Sbjct: 538 MIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTE 597

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
           + E  A ++ +L       Y LL+  YA  GRWE   +V+   +  G+ K  G SWI +K
Sbjct: 598 VAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVK 657

Query: 593 NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            ++Y F+AG  QH   +++Y +L+ L  +ME EG +
Sbjct: 658 KKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYI 693


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 297/597 (49%), Gaps = 34/597 (5%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C S     + K +HG   K G  ++  L N  L +YS  G S D   +F  +P+
Sbjct: 265 SILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPE 324

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSK 137
           ++ ISWN  L   ++      ALKVF E+      +++ +  S  A+C            
Sbjct: 325 RDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAAC------------ 372

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
                + P  FT            +GK +HG ++  GL    +++GN+LI  YGK   + 
Sbjct: 373 -----LDPEFFT------------NGKILHGFVVVLGLQ-DELIIGNTLITFYGKCHKMA 414

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY-TISIVINAC 256
            A  VF  M +LD ++WN+LI G  N+     A+  F  MR    S  +Y TI  ++ +C
Sbjct: 415 EAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSC 474

Query: 257 TKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
               +L K G  + A +V  GF  +  V S+ I +++KC  L  S  +F+QL     +V 
Sbjct: 475 LTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVW 534

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
           N +I+   RYGFGE AL+L   M    I   +F  S  LS +  +  +E G Q H   IK
Sbjct: 535 NAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIK 594

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GF+ +  + ++ M+MY K G +D +  I  +   R  +SWNT++    ++G+  +  + 
Sbjct: 595 LGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKET 654

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F ++L+ G+ P+ ++   +L AC++GG VD+G+  +++M   YG+ PG EH  C+IDLL 
Sbjct: 655 FHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLG 714

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           ++G+L +A    + MP  P   +W S+L +  IY ++ L    A+ +++L       Y L
Sbjct: 715 RSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVL 774

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
            +  +A  GRWE +  V+  M  + I K    SW+  K  I  F  G+  H   ++I
Sbjct: 775 YSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQI 831



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 190/372 (51%), Gaps = 10/372 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   ++ A  VFD + E +  SWN M+SGY   G    A+  F  +   G++PSGF  + 
Sbjct: 4   KFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIAS 63

Query: 153 LLSTVSS----ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           L++  +     A  G Q HG  I+ GL + +V +G S +  Y   G++  A  +F  M +
Sbjct: 64  LVTACNKSSIMAKEGFQFHGFAIKCGL-IYDVFVGTSFVHFYASYGIVSNAQKMFNEMPD 122

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            +++SW SL+    ++G  +  ++ +  MR+ G   +E  I++VI++C  L ++  G Q+
Sbjct: 123 RNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQL 182

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
              ++K G  +     ++ I +F  C  + ++  +F +++  D    N +IS   +    
Sbjct: 183 LGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLH 242

Query: 329 EVALELFQLM--LREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
           E +   F  M  + E+I  T  TLS +LS    +  ++ G   H +A+K G +SN  + +
Sbjct: 243 EESFRYFHWMRLVHEEINYT--TLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCN 300

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ +Y+  G    +  IF ++ +RDL+SWN+++    Q+GR    L VF E+L      
Sbjct: 301 TLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEI 360

Query: 446 DRITLAAVLLAC 457
           + +T  + L AC
Sbjct: 361 NYVTFTSALAAC 372



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 216/444 (48%), Gaps = 19/444 (4%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           +  A K+F+E+P+ +VVSW S++  Y+  G     +  + +M+ +G+  +    ++++S+
Sbjct: 110 VSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISS 169

Query: 157 VS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
                    G Q+ G  ++ GL  + V   NSLI M+G  G +  A  +F  M E D IS
Sbjct: 170 CGFLMDIILGHQLLGHALKFGLE-TKVSAANSLIFMFGGCGDINEACSIFNEMNERDTIS 228

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+IS    +   E +   F+ MR      +  T+SI+++ C  +  L  GK V  L+V
Sbjct: 229 WNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAV 288

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G  SN  + +  + ++S   R +D+  +F ++   D    N M++ Y + G    AL+
Sbjct: 289 KYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALK 348

Query: 334 LFQLML--REDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +F  ML  +++I    FT S + + +      +G   H   +  G     ++ ++L+  Y
Sbjct: 349 VFAEMLWMKKEINYVTFT-SALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFY 407

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP--DRIT 449
            K   +  + ++F ++ K D V+WN ++ G   N    E +  F +L+ EG     D IT
Sbjct: 408 GKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAF-KLMREGSTSGVDYIT 466

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG---EEHY-ACIIDLLCQAGQLGKAIDI 505
           +  +L +C       + ++ +      + V+ G   ++H  + +I +  + G L  +  I
Sbjct: 467 IVNILGSC----LTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYI 522

Query: 506 TSTMPFQPGCSIWESILRASAIYG 529
              + F+   S+W +I+ A+A YG
Sbjct: 523 FDQLVFKTS-SVWNAIIAANARYG 545



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 6/374 (1%)

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G + YA  VF  M E +  SWN ++SG    G    A+  F  +   G  P  + 
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 249 ISIVINACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           I+ ++ AC K   + K G Q    ++K G + +  V ++ +  ++    + ++ ++F ++
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              +      ++ +Y   G  +  +  ++ M  E I   E  ++ V+SS   +  +  G 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q    A+K G ++    A+SL+ M+   G I+ +  IF ++++RD +SWN+I+    QN 
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              E+   F  +       +  TL+ +L  C    ++  G  V   +  +YG+       
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGV-HGLAVKYGLESNICLC 299

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
             ++ +   AG+   A  I   MP +   S W S+L      G       V   M  L +
Sbjct: 300 NTLLSVYSDAGRSKDAELIFRRMPERDLIS-WNSMLACYVQDGRCLCALKVFAEM--LWM 356

Query: 547 PSPLPYSLLTQAYA 560
              + Y   T A A
Sbjct: 357 KKEINYVTFTSALA 370


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 176/610 (28%), Positives = 307/610 (50%), Gaps = 48/610 (7%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H HL K GF     L N+ L +Y                               LK 
Sbjct: 80  KQLHAHLIKFGFCQVLSLQNQILSVY-------------------------------LKC 108

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD--------YALEMFSKMQLQGVRPS 146
              + A K+F+E+P  +VVSWN MI   AS G +D             F +M L+ + P 
Sbjct: 109 QEAEDAKKLFEELPVRNVVSWNIMIR--ASVGRNDENESSGMRLCFSYFRRMLLEMMVPD 166

Query: 147 GFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             TF+    L +  +    G Q+H   ++ G  L +  +G +L+ +Y K G +  A  VF
Sbjct: 167 HITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDL-DCFVGCALVGLYAKCGFVENARRVF 225

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT--KLRN 261
            ++   D++ WN ++S    +   E A   F SMR    + DE+T S +++  +   L  
Sbjct: 226 CDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEY 285

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
            D GKQV +L ++  F S+ +V SA I++++K   + D+ R+F+++   +    N MI  
Sbjct: 286 YDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVG 345

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSN 380
           +G +G G   ++L + MLRE   P E T+S ++SS      +    Q H+ A+K      
Sbjct: 346 FGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDF 405

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             VA+SL+  Y+K GSI S+ + F    + DLV+W +++     +G A ++ ++FE++L 
Sbjct: 406 LSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLS 465

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G+ PDRI    VL AC + G V KG+  F  M   Y ++P  EHY C++DLL + G + 
Sbjct: 466 YGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLIN 525

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A +I  +MP +       + + +  ++ +++L +  AE++  ++    + Y++++  +A
Sbjct: 526 EAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFA 585

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
            +  W  + R++K M      KV GCSWI I N+I++F + +  H    ++Y+ L +L  
Sbjct: 586 SQKHWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFVSNDKSHPNALEMYVTLNMLLR 645

Query: 621 EMEDEGCVYL 630
            M+++  ++L
Sbjct: 646 PMKEQNGIHL 655



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 160/344 (46%), Gaps = 43/344 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C  F   +    +H    K+GF+   ++G   + LY++ G  ++  ++F ++  ++
Sbjct: 173 LICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRD 232

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN+ +           +  VF+ +PE                     A  +F+ M+L
Sbjct: 233 LVMWNVMV-----------SCYVFNSLPEE--------------------AFRVFNSMRL 261

Query: 141 QGVRPSGFTFSILLSTVSSAC-----HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             V    FTFS LLS +S         GKQ+H  ++R     S+V++ ++LI+MY K   
Sbjct: 262 DVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFD-SDVLVASALINMYAKSEN 320

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M   ++++WN++I G  N G G   +     M   G+ PDE TIS +I++
Sbjct: 321 IIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISS 380

Query: 256 CTKLRNLDKGKQVFALSVKVG---FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           C     + +  QV A +VK+    FLS   V ++ I  +SKC  +  + + FE   + D 
Sbjct: 381 CGYASAITETLQVHAFAVKLSCQDFLS---VANSLISAYSKCGSITSAFKCFELTSQPDL 437

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
                +I  Y  +G  E + E+F+ ML   I+P       VLS+
Sbjct: 438 VTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSA 481



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI-S 320
           L +GKQ+ A  +K GF     + +  + ++ KC   ED+ +LFE+L   +    N+MI +
Sbjct: 76  LPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRA 135

Query: 321 TYGRYGFGE-----VALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIK 374
           + GR    E     +    F+ ML E + P   T + ++        +E G Q H   +K
Sbjct: 136 SVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVK 195

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            GFD +  V  +L+ +YAK G ++++  +F  +  RDLV WN ++     N    E   V
Sbjct: 196 VGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRV 255

Query: 435 FEELLEEGLPPDRITLAAVL 454
           F  +  + +  D  T +++L
Sbjct: 256 FNSMRLDVVNGDEFTFSSLL 275



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 37/245 (15%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           +DF K +H  + +  F++   + +  +++Y++     D  ++FDE+  +N ++W      
Sbjct: 286 YDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAW------ 339

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                    N+MI G+ + G  +  +++  +M  +G  P   T 
Sbjct: 340 -------------------------NTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTI 374

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVV-LGNSLIDMYGKLGVLYYAFGVFLNM 206
           S ++S+    S+     Q+H   ++  LS  + + + NSLI  Y K G +  AF  F   
Sbjct: 375 SSIISSCGYASAITETLQVHAFAVK--LSCQDFLSVANSLISAYSKCGSITSAFKCFELT 432

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D+++W SLI      G  E + + F  M   G  PD      V++AC     + KG 
Sbjct: 433 SQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGL 492

Query: 267 QVFAL 271
             F L
Sbjct: 493 HYFKL 497


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/571 (28%), Positives = 305/571 (53%), Gaps = 31/571 (5%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +  Y   G   +  Q+FDE+P++N +SWN  + G +K+  ++ A  VF+ +PE +VV
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS 173
           SW +M+ GY   G    A  +F +M  +    +  +++++         G  I G  I  
Sbjct: 112 SWTAMVKGYVQEGMVVEAELLFWRMPER----NEVSWTVMF--------GGLIDGGRIDD 159

Query: 174 GLSLSNVVLGNSLI---DMYGKL---GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
              L +++ G  ++   +M G L   G +  A  +F  M E ++I+W ++I+G   +   
Sbjct: 160 ARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRV 219

Query: 228 ELALDQFYSMRYSGYSPDEYTIS--IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
           ++A   F  M      P++  +S   ++   T    ++  ++ F    +V  +   I  +
Sbjct: 220 DVARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFF----EVMPMKPVIACN 269

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           A I    +   +  + R+F+Q++  D A    MI  Y R GF   ALELF  M R+ +RP
Sbjct: 270 AMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRP 329

Query: 346 TEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
           +  +L  +LS    +  +++G Q H+  ++  FD +  VAS LM MY K G +  +  +F
Sbjct: 330 SFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVF 389

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
            +   +D++ WN+I+ G   +G   E L VF E+   G  P+++TL A+L AC+YGG ++
Sbjct: 390 DRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLE 449

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           +G+ +F +M+ ++ V P  EHY+C +D+L +AG++ KA+++ ++M  +P  ++W ++L A
Sbjct: 450 EGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGA 509

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
              +  + L E  A+++ +++  +  PY LL+   A R +W  +  ++K MR   ++K  
Sbjct: 510 CKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFP 569

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
           GCSWI +  +++ F  G +++H  Q + L++
Sbjct: 570 GCSWIEVGKKVHMFTRGGIRNHPEQAMILMM 600



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +  S  + + +H HL +  F+   Y+ +  + +Y + G       +FD  P K+ I W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMW 400

Query: 85  NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  + G       + ALKVF E+P     P+ V+  ++++  +  G  +  LE+F  M+
Sbjct: 401 NSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESME 459



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/428 (18%), Positives = 170/428 (39%), Gaps = 84/428 (19%)

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I    ++G +  A   F ++    I SWNS++SG F +G    A   F  M      P+ 
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEM------PER 77

Query: 247 YTISI--VINACTKLRNLDKGKQVFAL----------SVKVGFLSNSIVLSATI------ 288
             +S   +++   K R +++ + VF +          ++  G++   +V+ A +      
Sbjct: 78  NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMP 137

Query: 289 ---------------------------------DLFSKCN---------RLEDSVRLFEQ 306
                                            D+ +  N         R++++  +F++
Sbjct: 138 ERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDE 197

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVLSSIPIPPVEHG 365
           +   +      MI+ YG+    +VA +LF++M  + ++  T   L   LS      +E  
Sbjct: 198 MRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSG----RIEDA 253

Query: 366 SQFHS-MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
            +F   M +K     NA++ +       + G I  +  +F +++ RD  +W  ++    +
Sbjct: 254 EEFFEVMPMKPVIACNAMIVA-----LGEVGEIVKARRVFDQMEDRDNATWRGMIKAYER 308

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
            G   E L++F ++  +G+ P   +L ++L  C     +  G  V + +        G+ 
Sbjct: 309 KGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR--CQFDGDV 366

Query: 485 HYACII-DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           + A ++  +  + G+L KA  +    P +    +W SI+   A +G   L E   +   +
Sbjct: 367 YVASVLMTMYVKCGELVKAKLVFDRFPSK-DIIMWNSIISGYASHG---LGEEALKVFHE 422

Query: 544 LQLPSPLP 551
           + L   +P
Sbjct: 423 MPLSGTMP 430


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 312/613 (50%), Gaps = 54/613 (8%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAH-----TYLGNR 55
           +++Y ++  V++A   + S      +S+ +      +H  +F +    H         N 
Sbjct: 124 ITAYHRRNMVDEAFELFSSMPQRNSVSYATM-ITGFVHAGMFDMAEKLHREKPVIVSSNV 182

Query: 56  CLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSW 115
            ++ YS+ G  +D +++FD + +K+ +SW+  + GL +   +  A K+FD++P+ +VV+W
Sbjct: 183 LINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTW 242

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIR 172
             MI GY    +      +F  M+ +GV  +  T ++LL    S      G QIHG ++ 
Sbjct: 243 TLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLS 302

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
            G  + +  L NS+I MY +   +  A   F  M + DI++WNSLI+G   SG  E A+ 
Sbjct: 303 LGFDV-DAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVF 361

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            F +M      P +  +S     C                   GF S             
Sbjct: 362 LFENM------PQKDVVSWTTLIC-------------------GFASEG----------- 385

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
              R+++ + LF+ +   D      +IS        E+A   F  ML+  I+P  FTLSC
Sbjct: 386 ---RIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSC 442

Query: 353 VLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           VLS+   +  +  G Q H++  K   +++  + +SL+ MY+K G++D + ++F  +   +
Sbjct: 443 VLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPN 502

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           +V++NTI+ GL QNG   E L++F ++ ++ L P+ IT   VL AC + G V++G   F 
Sbjct: 503 VVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFD 562

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            M+  Y + P  +HYAC++DLLC+AG   +A+ + S+MPF P   +W ++L AS  +  +
Sbjct: 563 LMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRL 622

Query: 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRG--RWEAIVRVKKVMRKNGINKVTGCSWI 589
            + E  A+ + +L+  S  PY +L+  +++ G  R   ++R+ K  R  G+ K  GCSWI
Sbjct: 623 DVAELAAQNLFELEPNSATPYVILSNLHSISGDERKHELIRLMKKSR--GLKKSPGCSWI 680

Query: 590 GIKNRIYTFNAGE 602
            +K+ ++ F+AG 
Sbjct: 681 ILKDEVHLFHAGH 693



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 374 KSGFDSNAVVASSLMEMY--------AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
           +  FDS     SS   +Y         + G I  +  IF ++  ++ VSW  ++    +N
Sbjct: 40  RGNFDSATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAEN 99

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
               +  +VF ++ +    P+  +  A++ A +    VD+   +FS+M +   V      
Sbjct: 100 SEINKAREVFNKIPD----PNVASYNAMITAYHRRNMVDEAFELFSSMPQRNSV-----S 150

Query: 486 YACIIDLLCQAGQLGKAIDITSTMP 510
           YA +I     AG    A  +    P
Sbjct: 151 YATMITGFVHAGMFDMAEKLHREKP 175


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 295/605 (48%), Gaps = 76/605 (12%)

Query: 6   KKAHVNKASLSYCSQLIDR--CLSFKSFD----FAKTIHGH-----LFKLGFNAHTYLGN 54
            + HV+  SLS    +  R  C  F   D     +  +HG        K GF +  +L N
Sbjct: 232 NRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNN 291

Query: 55  RCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVS 114
             LD+Y++ G                               N+D+A  +F  +PE  VVS
Sbjct: 292 SLLDMYAKNG-------------------------------NMDSAEMIFVNMPEVSVVS 320

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG 174
           WN MI+GY     S  A+E   +MQ  G  P   T+  +L     AC         I+SG
Sbjct: 321 WNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV----AC---------IKSG 367

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
               ++  G  + D                 M    + SWN+++SG   +   + A+  F
Sbjct: 368 ----DIEAGRQMFD----------------GMSSPSLSSWNTILSGYSQNENHKEAVKLF 407

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M++    PD  T++I++++   +  L+ G+QV A+S K  F ++  + S  I ++SKC
Sbjct: 408 REMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKC 467

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
            ++E + R+F+++   D    N M++        + A   F+ M  + + P++F+ + VL
Sbjct: 468 GKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVL 527

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           S    +  +  G Q HS   + G+ ++A V S+L++MY+K G +D++  +F  +  ++ V
Sbjct: 528 SCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTV 587

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           +WN ++ G  QNG   E + ++E+++  G  PD IT  AVL AC++ G VD G+ +F++M
Sbjct: 588 TWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSM 647

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
           ++E+GV P  +HY CIID L +AG+L +A  +   MP +    IWE +L +  +Y DV L
Sbjct: 648 QQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSL 707

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
               AE +  L   +  PY LL   Y+  GRW+    V+++M  N + K  G SWI  KN
Sbjct: 708 ARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKN 767

Query: 594 RIYTF 598
            +  F
Sbjct: 768 GMQAF 772



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/572 (25%), Positives = 261/572 (45%), Gaps = 88/572 (15%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +Y + L+  C+  K+    K IH H+ +   +  T+L NR ++ Y++    D   +LFD+
Sbjct: 6   TYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +P+++  +WN  L    K+  L+ A  +F E+PE ++VSWN++IS     G+   AL ++
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVY 125

Query: 136 SKMQLQGVRPSGFTFSILLST----VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
            +M  +G  P+ FT + +LS     V   C G++ HG  I+ GL  +N+ +GN+L+ MY 
Sbjct: 126 YRMSREGFVPTHFTLASVLSACGALVDVEC-GRRCHGISIKIGLD-NNIYVGNALLGMYA 183

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +  A   F ++ E + +S+ +++ G  +S     A   F  M  +    D  ++S 
Sbjct: 184 KCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSS 243

Query: 252 VINACTK--------------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           V+  C++              L +   G+QV  L++K GF S+  + ++ +D+++K   +
Sbjct: 244 VLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNM 303

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSS 356
           + +  +F  +        NVMI+ YG+      A+E  Q M      P E T ++ +++ 
Sbjct: 304 DSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVAC 363

Query: 357 IPIPPVEHGSQ-FHSMA---------IKSGFDSN-------------------------A 381
           I    +E G Q F  M+         I SG+  N                         A
Sbjct: 364 IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLA 423

Query: 382 VVASS-------------------------------LMEMYAKTGSIDSSTEIFVKLDKR 410
           ++ SS                               L+ MY+K G ++ +  IF ++ + 
Sbjct: 424 IILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAEL 483

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D+V WN++M GL+ N    E    F+++ E+G+ P + + A VL  C     + +G  V 
Sbjct: 484 DIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVH 543

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           S +  E G M      + +ID+  + G +  A
Sbjct: 544 SQIARE-GYMNDAFVGSALIDMYSKCGDVDAA 574


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 195/645 (30%), Positives = 319/645 (49%), Gaps = 61/645 (9%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V    L+Y S +++ C S     +   +HG + K G  A T L N  +  Y + G     
Sbjct: 221 VAPTELTYAS-VVNACGSSGEEKYGAMVHGRIIKAGLEA-TNLWNSLVTFYGKCG----- 273

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                     NL  A ++F+ I   DVVSWN+MI+     G  +
Sbjct: 274 --------------------------NLQHASQLFERISRKDVVSWNAMIAANEQRGEGE 307

Query: 130 YALEMFSKMQL--QGVRPSGFTFSILLSTVS--SACH-GKQIHGSMIRSGLSLSNVVLGN 184
            AL +F +M      V+P+  TF  LLS VS  SA   G++IH  + R  L + +  + N
Sbjct: 308 NALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEV-DTSITN 366

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           SLI  Y K   +  A  +F  +   DIISWNS+++G   +       D F  M  SG  P
Sbjct: 367 SLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEP 426

Query: 245 DEYTISIVINACTK----LRNLDKGKQVFAL---SVKVGFLSNSIVLSATIDLFSKCNRL 297
           D ++++I+ NA ++    L    +GK++       +  G +S S V +A + +++K NR+
Sbjct: 427 DSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLS-VSNAILKMYAKFNRI 485

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            D+ ++F+ +   D    N M+  Y R    E  L +F  +L++       +LS +L+S 
Sbjct: 486 ADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSC 545

Query: 358 -PIPPVEHGSQFHSMAIK-------SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
             +  ++ G QFH++  K          DS   + ++L+ MY+K GSI  + ++F+K+++
Sbjct: 546 GRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMER 605

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           +D+ SW  ++ G   +G A E L +FE +  +G+ P+++T  A+L+AC +GG V +G   
Sbjct: 606 KDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYY 665

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA-----IDITSTMPFQPGC-SIWESILR 523
           F +M  +YG+ P  EHYAC+IDL  ++GQ  +A       IT   P+     ++W+ +L 
Sbjct: 666 FDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLG 725

Query: 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583
           A      + L    A ++++L+      Y LL   YA  G WE  ++V+K MR  G+ K 
Sbjct: 726 ACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKE 785

Query: 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            GCSWI   NR + F AG++ H   ++IY  L  L +     G V
Sbjct: 786 VGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYV 830



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 205/404 (50%), Gaps = 19/404 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           + + L  A ++FD  P  DV+SW+++I+ Y+ CG    A  +F KM  +G++P+GF+ + 
Sbjct: 67  EHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLAS 126

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--LNME 207
           LL    S       +Q+HG  IR+G  L + +   + I MY + GVL  A  VF   ++ 
Sbjct: 127 LLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRA-AWITMYSRCGVLEDAQRVFDETSLL 185

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGK 266
            LDI+ WNS+I+     G     L  F  M   G  +P E T + V+NAC        G 
Sbjct: 186 ALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGA 245

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
            V    +K G L  + + ++ +  + KC  L+ + +LFE++ R D    N MI+   + G
Sbjct: 246 MVHGRIIKAG-LEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRG 304

Query: 327 FGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            GE AL LF+ ML+ +  ++P   T   +LS++  +  +  G + H+   +   + +  +
Sbjct: 305 EGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSI 364

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            +SL+  Y+K   +  + EIF +L  RD++SWN+++ G  QN +     D+F+ ++  G+
Sbjct: 365 TNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGI 424

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG-----VMPG 482
            PD  +L  +    N       G++ F   KE +G     + PG
Sbjct: 425 EPDSHSLTIIF---NAASRDSSGLIYFRRGKEIHGYILRRITPG 465



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 210/436 (48%), Gaps = 44/436 (10%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +HG   + GF   + +    + +YSR G  +D  ++FDE                   
Sbjct: 141 RQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDE------------------- 181

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSIL 153
               T+L         D++ WNS+I+ Y   G     L +F KM   G V P+  T++ +
Sbjct: 182 ----TSLLAL------DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASV 231

Query: 154 LSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           ++   S+    +G  +HG +I++GL  +N  L NSL+  YGK G L +A  +F  +   D
Sbjct: 232 VNACGSSGEEKYGAMVHGRIIKAGLEATN--LWNSLVTFYGKCGNLQHASQLFERISRKD 289

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRY--SGYSPDEYTISIVINACTKLRNLDKGKQV 268
           ++SWN++I+     G GE AL  F  M        P+  T   +++A + L  L  G+++
Sbjct: 290 VVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREI 349

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A   ++    ++ + ++ I  +SKC  +  +  +FE+L   D    N M++ Y +    
Sbjct: 350 HAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQ 409

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLS-----SIPIPPVEHGSQFHSMAIK--SGFDSNA 381
               ++F+ M+   I P   +L+ + +     S  +     G + H   ++  +    + 
Sbjct: 410 GRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSL 469

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V++++++MYAK   I  + +IF  +  RD  SWN +M G ++N +  + L +F ++L++
Sbjct: 470 SVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQ 529

Query: 442 GLPPDRITLAAVLLAC 457
           G P D ++L+ +L +C
Sbjct: 530 GFPLDHVSLSILLTSC 545


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 188/673 (27%), Positives = 311/673 (46%), Gaps = 108/673 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+    S+ +    + +H    K G  N+   + NR L LYSR     D   LFDE+PQ 
Sbjct: 6   LVRTLQSWSTLREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQT 65

Query: 80  NC-------------------------------ISWNICLRGLLKSDNLDTALKVFDEIP 108
           N                                 SWN+ +    KS +L  A  +F+ +P
Sbjct: 66  NSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMP 125

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF--SILLSTVSSACH---- 162
             + + WNS+I  Y+  G+   AL +F  M L    PS   +  + +L+T   AC     
Sbjct: 126 SKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLD---PSQIVYRDAFVLATALGACADSLA 182

Query: 163 ---GKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS----- 213
              GKQ+H  +   G+ L  + VL +SLI++YGK G L  A  +   + ++D  S     
Sbjct: 183 LNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALI 242

Query: 214 --------------------------WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
                                     WNS+ISG  ++G    A++ F +M  +G   D  
Sbjct: 243 SGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDAS 302

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            ++ +++A + L  ++  KQ+   + K G   + +V S+ +D +SKC    ++ +LF +L
Sbjct: 303 AVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSEL 362

Query: 308 DRWDYAVINVMISTYGRYGFGE-------------------------------VALELFQ 336
             +D  ++N MI+ Y   G  E                                AL +F 
Sbjct: 363 KEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFS 422

Query: 337 LMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            M + D++   F+ + V+S+      +E G Q    AI  G +S+ ++++SL++ Y K G
Sbjct: 423 QMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCG 482

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            ++   ++F  + K D VSWNT++MG   NG   E L +F E+   G+ P  IT   VL 
Sbjct: 483 FVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLS 542

Query: 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           AC++ G V++G  +F  MK  Y + PG EH++C++DL  +AG   +A+D+   MPFQ   
Sbjct: 543 ACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADA 602

Query: 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575
           ++W S+LR    +G+  + +  AE+++ L+  +   Y  L+   A  G WE    V+++M
Sbjct: 603 NMWLSVLRGCIAHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELM 662

Query: 576 RKNGINKVTGCSW 588
           R     K+ GCSW
Sbjct: 663 RDKHFQKIPGCSW 675



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 38/227 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +I  C    S +  + + G    +G  +   +    +D Y + G  +   ++FD + +
Sbjct: 437 ASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVK 496

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + +SWN  L                                GYA+ GY   AL +F +M
Sbjct: 497 TDEVSWNTMLM-------------------------------GYATNGYGIEALTLFCEM 525

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              GV PS  TF+ +LS    +     G+ +  +M  S      +   + ++D++ + G 
Sbjct: 526 TYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGY 585

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMR 238
              A  +   M  + D   W S++ GC    N   G++A +Q   + 
Sbjct: 586 FEEAMDLIEEMPFQADANMWLSVLRGCIAHGNKTIGKMAAEQIIQLE 632


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 177/585 (30%), Positives = 300/585 (51%), Gaps = 47/585 (8%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           NL+ A K+F  I  P ++ +N +I  +A  G     L +FSK++  G+ P  FT+  +  
Sbjct: 86  NLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFK 145

Query: 156 TVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +         +++ G + ++GL     V  NSLIDMY +L +      +F  M + D+I
Sbjct: 146 AIGYLGEVSKAEKLRGLVTKTGLEFDTYV-RNSLIDMYAQLALTDVMKMLFDEMPDRDVI 204

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQV--- 268
           SWN +ISG       E A++ F  M+  SG  PDE T+   ++ACT L+ L+ GK++   
Sbjct: 205 SWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY 264

Query: 269 ---------------FALSVKVGFLS------------NSIVLSATIDLFSKCNRLEDSV 301
                            +  K G LS            N I  +  +  ++ C  LE++ 
Sbjct: 265 VRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEAR 324

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LFE     D  +   MI+ Y ++   + A+ LF+ M    ++P +F +  +L+      
Sbjct: 325 ELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTG 384

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G   H    ++    +AVV ++L+EMYAK G I+ + EIF  L  +D  SW +I+ 
Sbjct: 385 AIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIIC 444

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           GL  NG+ ++ L++F ++ + G+ PD IT   VL AC++GG V++G   F++M+ EY + 
Sbjct: 445 GLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIK 504

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC---SIWESILRASAIYGDVKLTENV 537
           P  EHY C++DLL +AG L +A ++   +P +       ++ S+L A  IYG+V++ E V
Sbjct: 505 PKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERV 564

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A++++  +      ++LL   YA   RWE + +V++ M+  G+ K  GCS I + + I+ 
Sbjct: 565 AKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHE 624

Query: 598 FNAGELQHHGGQKIYLVLRLLTW--------EMEDEGCVYLECDK 634
           F +G   H   ++IY +L ++          EME E  V +  D+
Sbjct: 625 FFSGHPSHPEMREIYYMLNIMAKPLLGSAKNEMEGEDLVGMTFDE 669



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + K  +  K IH H  +        +GN  LD+Y + G       +F+E+P KN I W
Sbjct: 249 CTALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICW 307

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
              + G      L+ A ++F+  P  DVV W +MI+GY      D A+ +F +MQ++ V+
Sbjct: 308 TTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVK 367

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  F    LL+  +       GK IH  +  + + +  VV G +LI+MY K G +  A  
Sbjct: 368 PDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVV-GTALIEMYAKCGFIEKALE 426

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F  +   D  SW S+I G   +G    AL+ F  M+ +G  PD+ T   V++AC+    
Sbjct: 427 IFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGL 486

Query: 262 LDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +++G++ F  S+++ +     V      +DL  +   L ++  L +++   + A+
Sbjct: 487 VEEGRKFFN-SMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAI 540



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 181/412 (43%), Gaps = 72/412 (17%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ + G + K G    TY+ N  +D+Y++   +D +  LFDE+P ++ ISWN+ + G +K
Sbjct: 156 AEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVK 215

Query: 94  SDNLDTALKVFDEIPE-----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGF 148
               + A+ VF  + E     PD  +  S +S          A     +++L        
Sbjct: 216 CRRFEDAINVFCRMQEESGLMPDEATVVSTLS----------ACTALKRLEL-------- 257

Query: 149 TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
                         GK+IH   +R  +  + ++ GN+L+DMY K G L  A  VF  M  
Sbjct: 258 --------------GKKIH-HYVRDNVKFTPII-GNALLDMYCKCGCLSIARAVFEEMPS 301

Query: 209 LDIISWNSLISGCFNSGYGELALDQF----------YSMRYSGY---------------- 242
            ++I W +++SG  N G  E A + F          ++   +GY                
Sbjct: 302 KNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREM 361

Query: 243 -----SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
                 PD++ +  ++  C +   +++GK +     +     +++V +A I++++KC  +
Sbjct: 362 QIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFI 421

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           E ++ +F  L   D A    +I      G    ALELF  M +  +RP + T   VLS+ 
Sbjct: 422 EKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSAC 481

Query: 358 PIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
                VE G + F+SM ++            L+++  + G ++ + E+  K+
Sbjct: 482 SHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKI 533



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 177/413 (42%), Gaps = 43/413 (10%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI----DMYGKLGVLYYAFGVFLNMEEL 209
           L +  S  H KQIH  + R GL   ++V  N L+    D +   G L YA  +F  +   
Sbjct: 44  LKSCKSMTHLKQIHAQIFRVGLH-QDIVSLNKLMAFCTDPFN--GNLNYAEKMFKYIRYP 100

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            ++ +N +I      G  +  L  F  +R  G  PD +T   V  A   L  + K +++ 
Sbjct: 101 CLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLR 160

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L  K G   ++ V ++ ID++++    +    LF+++   D    NVMIS Y +    E
Sbjct: 161 GLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFE 220

Query: 330 VALELFQLMLRED-IRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            A+ +F  M  E  + P E T+   LS+   +  +E G + H   ++       ++ ++L
Sbjct: 221 DAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPIIGNAL 279

Query: 388 MEMYAK-------------------------------TGSIDSSTEIFVKLDKRDLVSWN 416
           ++MY K                                G ++ + E+F     RD+V W 
Sbjct: 280 LDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWT 339

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
            ++ G  Q  R  E + +F E+    + PD+  + ++L  C   G +++G  +   + E 
Sbjct: 340 AMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDEN 399

Query: 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
              +      A +I++  + G + KA++I   +  +   S W SI+   A+ G
Sbjct: 400 RIPIDAVVGTA-LIEMYAKCGFIEKALEIFYGLRVKDTAS-WTSIICGLAMNG 450



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 54/216 (25%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    + +  K IH  + +        +G   +++Y++ G  +  L++F  +  K+
Sbjct: 376 LLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKD 435

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             SW                                S+I G A  G +  ALE+FSKM+ 
Sbjct: 436 TASW-------------------------------TSIICGLAMNGKTSKALELFSKMKQ 464

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSN-----------VVLGNSLIDM 189
            GVRP   TF  +LS  S        HG ++  G    N           V     L+D+
Sbjct: 465 AGVRPDDITFIGVLSACS--------HGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDL 516

Query: 190 YGKLGVLYYAFGVFLNMEE----LDIISWNSLISGC 221
            G+ G+L  A  +   + +    + +  + SL+S C
Sbjct: 517 LGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSAC 552



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 351 SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK--TGSIDSSTEIFVKLD 408
           SC+        + H  Q H+   + G   + V  + LM        G+++ + ++F  + 
Sbjct: 39  SCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIR 98

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
              L+ +N I+    + G    TL +F +L E+GL PD  T   V  A  Y G V K 
Sbjct: 99  YPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKA 156


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 180/616 (29%), Positives = 299/616 (48%), Gaps = 38/616 (6%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           + CS L+  C S   F     IH    +   ++   + N  +++YS  G   D   LF  
Sbjct: 248 TLCS-LMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-- 304

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                   WN+  R                     D++SWN+MIS Y     S  AL+  
Sbjct: 305 --------WNMSRR---------------------DLISWNTMISSYVQNCNSTDALKTL 335

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            ++      P+  TFS  L   SS      GK +H  +++  L   N+++GNSLI MYGK
Sbjct: 336 GQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ-RNLLVGNSLITMYGK 394

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              +  A  VF +M   D++S+N LI G      G  A+  F  +R +G  P+  T+  +
Sbjct: 395 CNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454

Query: 253 INACTKLRNLDK-GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
             + T   +L   G+ + A  ++ GFLS+  V ++ I +++KC  LE S  +F  +   +
Sbjct: 455 HGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKN 514

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHGSQFHS 370
               N +I+   + G GE AL+LF  M     +     L+ C+ S   +  +E G Q H 
Sbjct: 515 IVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHG 574

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + +KSG DS++ V ++ M+MY K G ++   ++      R    WNT++ G  + G   E
Sbjct: 575 LGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKE 634

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
             + F++++  G  PD +T  A+L AC++ G VDKG+  +++M   +GV PG +H  CI+
Sbjct: 635 AEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIV 694

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL + G+  +A      MP  P   IW S+L +S  + ++++    A+++++L      
Sbjct: 695 DLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDS 754

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y LL+  YA   RW  + +++  M+   INK   CSW+ +KN + TF  G+  H   +K
Sbjct: 755 AYVLLSNLYATNARWVDVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEK 814

Query: 611 IYLVLRLLTWEMEDEG 626
           IY  L  +  ++ + G
Sbjct: 815 IYAKLDEMLLKLREVG 830



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 226/450 (50%), Gaps = 8/450 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A K+FD + E D +S N+MIS Y+  G       +FS M+  G+RP   T   L+S  +S
Sbjct: 199 AEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 258

Query: 160 A---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           A    HG  IH   +RS L  S+V + N+L++MY   G L  A  +F NM   D+ISWN+
Sbjct: 259 ADHFSHGSGIHSLCLRSSLD-SSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT 317

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +IS    +     AL     + ++   P+  T S  + AC+    L  GK V A+ +++ 
Sbjct: 318 MISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLS 377

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
              N +V ++ I ++ KCN +ED+ ++F+ +   D    NV+I  Y     G  A+++F 
Sbjct: 378 LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFS 437

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEH--GSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
            +    I+P   T+  +  S       H  G   H+  I++GF S+  VA+SL+ MYAK 
Sbjct: 438 WIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKC 497

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G+++SST IF  +  +++VSWN I+    Q G   E L +F ++   G   DR+ LA  L
Sbjct: 498 GNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECL 557

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            +C     +++GM +   +  + G+          +D+  + G++ + + +      +P 
Sbjct: 558 SSCASLASLEEGMQLH-GLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQ 616

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDL 544
              W +++   A YG  K  E   ++M+ +
Sbjct: 617 -QCWNTLISGYAKYGYFKEAEETFKQMVAM 645



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 12/374 (3%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS------- 159
           +P+    +W + +SG   CG    A E+   M+ +GV  SGF  + L++           
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
           AC G  IH    R+GL + NV +G +L+ +YG  G++  A  +F  M E +++SW +L+ 
Sbjct: 61  AC-GAAIHALTHRAGL-MGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMV 118

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
              ++GY E  L  +  MR  G   +    + V++ C  L N   G QV +  +  G  +
Sbjct: 119 ALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQN 178

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
              V ++ I +F    R++D+ +LF++++  D    N MIS Y   G       +F  M 
Sbjct: 179 QVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMR 238

Query: 340 REDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
              +RP   TL C L S+        HGS  HS+ ++S  DS+  V ++L+ MY+  G +
Sbjct: 239 HHGLRPDATTL-CSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKL 297

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             +  +F  + +RDL+SWNT++    QN  + + L    +L      P+ +T ++ L AC
Sbjct: 298 SDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGAC 357

Query: 458 NYGGFVDKGMLVFS 471
           +  G +  G +V +
Sbjct: 358 SSPGALIDGKMVHA 371



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 91/214 (42%), Gaps = 37/214 (17%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           NK      ++ +  C S  S +    +HG   K G ++ +Y+ N  +D+Y + G  +++L
Sbjct: 546 NKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEML 605

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           Q+   +P                    D A++     P+     WN++ISGYA  GY   
Sbjct: 606 QM---VP--------------------DQAIR-----PQQ---CWNTLISGYAKYGYFKE 634

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           A E F +M   G +P   TF  LLS  S A     G   + SM  S      +     ++
Sbjct: 635 AEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIV 694

Query: 188 DMYGKLGVLYYAFGVFLNMEEL--DIISWNSLIS 219
           D+ G+LG    A      M  L  D+I W SL+S
Sbjct: 695 DLLGRLGRFAEAERFIEEMPVLPNDLI-WRSLLS 727


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 157/536 (29%), Positives = 287/536 (53%), Gaps = 10/536 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           +D+AL+VF EI + D +SWNSM+S Y        A++ F +M   G  P       LLS 
Sbjct: 315 VDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 157 VSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           V       +G+++H   ++  L  S++ + N+L+DMY K   +  +  VF  M   D +S
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLD-SDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVS 433

Query: 214 WNSLISGCF--NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           W ++I+ C+  +S Y E A+ +F + +  G   D   +  ++ AC+ L+++   KQV + 
Sbjct: 434 WTTIIA-CYAQSSRYSE-AIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSY 491

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +++ G L + I+ +  ID++ +C  +  ++ +FE LD+ D      M++ +   G    A
Sbjct: 492 AIRNGLL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEA 550

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           + LF  ML   I+P    L  +L +I  +  +  G + H   I+  F     V SSL++M
Sbjct: 551 VALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDM 610

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y+  GS++ + ++F +   +D+V W  ++     +G   + + +F+ +LE G+ PD ++ 
Sbjct: 611 YSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSF 670

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            A+L AC++   VD+G      M  +Y + P +EHYAC++DLL ++GQ  +A     +MP
Sbjct: 671 LALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMP 730

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +P   +W ++L A  I+ + +L     +++++L+  +P  Y L++  +A  G+W  +  
Sbjct: 731 LEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKE 790

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           ++  M + G+ K   CSWI I N ++TF A +  H   Q I+L L  +T ++  EG
Sbjct: 791 IRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREG 846



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 213/432 (49%), Gaps = 37/432 (8%)

Query: 35  KTIHGHLFK---LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           + +H H      LG +   +L  + L +Y + G   D  +LFD +P +   SWN  +   
Sbjct: 75  RQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGAC 134

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           L S     A+ V+  +   + V+                           G  P G T +
Sbjct: 135 LSSGGAGEAVGVYRAMRASEPVA---------------------------GAAPDGCTLA 167

Query: 152 ILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            +L    +   G+   ++HG  ++SGL  S +V  N+L+ MY K G+L  A  VF  M +
Sbjct: 168 SVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLV-ANALVGMYAKCGLLDSALRVFEWMRD 226

Query: 209 -LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D+ SWNS ISGC  +G    ALD F  M+  G+S + YT   V+  C +L  L+ G++
Sbjct: 227 GRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRE 286

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           + A  +K G   N I  +A + ++++C  ++ ++R+F ++   DY   N M+S Y +   
Sbjct: 287 LHAALLKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRL 345

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
              A++ F  M++    P    +  +LS++  +  + +G + H+ A+K   DS+  +A++
Sbjct: 346 YAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANT 405

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           LM+MY K  S++ S  +F ++  +D VSW TI+    Q+ R +E +  F    +EG+  D
Sbjct: 406 LMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVD 465

Query: 447 RITLAAVLLACN 458
            + + ++L AC+
Sbjct: 466 PMMMGSILEACS 477



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 240/472 (50%), Gaps = 17/472 (3%)

Query: 97  LDTALKVFDEIPE-PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           LD+AL+VF+ + +  DV SWNS ISG    G    AL++F +MQ  G   + +T   +L 
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQ 273

Query: 156 TVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             +      HG+++H ++++ G   +  +  N+L+ MY + G +  A  VF  + + D I
Sbjct: 274 VCAELAQLNHGRELHAALLKCGTEFN--IQCNALLVMYARCGWVDSALRVFREIGDKDYI 331

Query: 213 SWNSLISGCF--NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           SWNS++S C+  N  Y E A+D F  M  +G++PD   I  +++A   L  L  G++V A
Sbjct: 332 SWNSMLS-CYVQNRLYAE-AIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHA 389

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
            +VK    S+  + +  +D++ KC  +E S R+F+++   D+     +I+ Y +      
Sbjct: 390 YAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSE 449

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+  F+   +E I+     +  +L +   +  +    Q HS AI++G   + ++ + +++
Sbjct: 450 AIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIID 508

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
           +Y + G +  +  IF  LDK+D+V+W +++    +NG   E + +F ++L  G+ PD + 
Sbjct: 509 IYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVA 568

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH-YACIIDLLCQAGQLGKAIDITST 508
           L  +L A      + KG  +   +    G  P E    + ++D+    G +  A+ +   
Sbjct: 569 LVGILGAIAGLSSLTKGKEIHGFLIR--GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDE 626

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
              +    +W +++ A+ ++G  K    + +RM++  + SP   S L   YA
Sbjct: 627 AKCKD-VVLWTAMINATGMHGHGKQAIYIFKRMLETGV-SPDHVSFLALLYA 676



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 169/327 (51%), Gaps = 9/327 (2%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVV--LGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L++   +   G+Q+H   + +G    +    L   L+ MYGK G L  A  +F  M    
Sbjct: 64  LVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPART 123

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYS----GYSPDEYTISIVINACTKLRNLDKGK 266
           + SWN+LI  C +SG    A+  + +MR S    G +PD  T++ V+ AC    +   G 
Sbjct: 124 VFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGS 183

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRY 325
           +V  L+VK G   +++V +A + +++KC  L+ ++R+FE + D  D A  N  IS   + 
Sbjct: 184 EVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQN 243

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G    AL+LF+ M  +      +T   VL     +  + HG + H+  +K G + N +  
Sbjct: 244 GMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQC 302

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+ MYA+ G +DS+  +F ++  +D +SWN+++    QN   AE +D F E+++ G  
Sbjct: 303 NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFN 362

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS 471
           PD   + ++L A  + G +  G  V +
Sbjct: 363 PDHACIVSLLSAVGHLGRLINGREVHA 389



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 37/291 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C   KS    K +H +  + G      L NR +D+Y   G              + 
Sbjct: 472 ILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECG--------------EV 516

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C + NI                 F+ + + D+V+W SM++ +A  G    A+ +F KM  
Sbjct: 517 CYALNI-----------------FEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 141 QGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P       +L  +   SS   GK+IHG +IR    +   V+ +SL+DMY   G + 
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVV-SSLVDMYSGCGSMN 618

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  VF   +  D++ W ++I+     G+G+ A+  F  M  +G SPD  +   ++ AC+
Sbjct: 619 YALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678

Query: 258 KLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             + +D+GK    + V K          +  +DL  +  + E++ +  + +
Sbjct: 679 HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSM 729



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 230 ALDQFYSMRYSGYSP---DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN---SIV 283
           AL Q  +    G +P   D Y    V++     R + +G+Q+ A +V  G L +     +
Sbjct: 38  ALRQLAARSARGRAPPPTDHY--GWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFL 95

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED- 342
            +  + ++ KC RL D+ RLF+ +        N +I      G    A+ +++ M   + 
Sbjct: 96  ATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEP 155

Query: 343 ---IRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
                P   TL+ VL +         GS+ H +A+KSG D + +VA++L+ MYAK G +D
Sbjct: 156 VAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLD 215

Query: 399 SSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           S+  +F  + D RD+ SWN+ + G  QNG   E LD+F  +  +G   +  T   VL  C
Sbjct: 216 SALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 458 NYGGFVDKGMLVFSAM 473
                ++ G  + +A+
Sbjct: 276 AELAQLNHGRELHAAL 291



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +++ ALKVFDE    DVV W +MI+     G+   A+ +F +M   GV P   +F  LL 
Sbjct: 616 SMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLY 675

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLG------NSLIDMYGKLGVLYYAFGVFLNME-E 208
             S   H K +        + +S   L         ++D+ G+ G    A+    +M  E
Sbjct: 676 ACS---HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLE 732

Query: 209 LDIISWNSLISGCFNSGYGELAL 231
              + W +L+  C      ELA+
Sbjct: 733 PKSVVWCALLGACRIHKNHELAM 755


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/535 (29%), Positives = 286/535 (53%), Gaps = 6/535 (1%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
            ++ A +VF  +   D VSWN+++SG         A+  F  MQ  G +P   +   +++
Sbjct: 301 QMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIA 360

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
               + +   G ++H   I+ G+  SN+ +GNSLIDMYGK   + Y    F  M E D+I
Sbjct: 361 ASGRSANLLAGMEVHAYAIKHGID-SNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLI 419

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW ++I+G   +     AL+    ++      D   I  ++ AC+ L++    K++    
Sbjct: 420 SWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYV 479

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K G L++ ++ +A ++++ +   ++ +  +FE ++  D      MI+     G    AL
Sbjct: 480 LK-GGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEAL 538

Query: 333 ELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           ELF  ++  +I P   TL  VL ++  +  ++ G + H   I+ GF    ++A+SL++MY
Sbjct: 539 ELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMY 598

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           A+ G+++++  IF  + +RDL+ W +++     +G   + +D+F ++ +E + PD IT  
Sbjct: 599 ARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFL 658

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           A+L AC++ G V +G   F  MK EY + P  EHYAC++DLL ++  L +A      MP 
Sbjct: 659 ALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPI 718

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W ++L A  I+ +  L E  A++++ L   +   Y L++  +A  GRW  +  V
Sbjct: 719 EPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEV 778

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           + +M+ N + K  GCSWI ++N+I+TF A +  H     IYL L   T  ++++G
Sbjct: 779 RSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKG 833



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 142/555 (25%), Positives = 255/555 (45%), Gaps = 52/555 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +FK       IHG   K G+    ++ N  + +Y++ G       LFD      
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDS----- 208

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                    GL++ D               D VSWNS+IS +   G S  AL +F +MQ 
Sbjct: 209 ---------GLMEKD---------------DPVSWNSIISAHVGEGESLEALSLFRRMQE 244

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV  + +TF   L           G+ IH  +++S    ++V + N+LI MY   G + 
Sbjct: 245 VGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSN-HFTDVYVSNALIAMYANCGQME 303

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF +M   D +SWN+L+SG   +     A++ F  M+ SG  PD+ ++  +I A  
Sbjct: 304 DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +  NL  G +V A ++K G  SN  + ++ ID++ KC  ++     FE +   D      
Sbjct: 364 RSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTT 423

Query: 318 MISTYGRYGFGEVALELFQLMLRE--DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
           +I+ Y +      AL L + +  E  D+ P     S +L+   +   +   + H   +K 
Sbjct: 424 IIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIG-SILLACSGLKSEKLIKEIHGYVLKG 482

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G  ++ ++ ++++ +Y +   +D +  +F  ++ +D+VSW +++     NG A E L++F
Sbjct: 483 GL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELF 541

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY------ACI 489
             L+E  + PD ITL +VL A      + KG       KE +G +  +  +        +
Sbjct: 542 NSLIETNIEPDLITLVSVLYAAAALSSLKKG-------KEIHGFLIRKGFFLEGLIANSL 594

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPS 548
           +D+  + G +  A +I + +  Q    +W S++ A+ ++G  K   ++  +M D   LP 
Sbjct: 595 VDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPD 653

Query: 549 PLPYSLLTQAYAMRG 563
            + +  L  A +  G
Sbjct: 654 HITFLALLYACSHSG 668



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 210/447 (46%), Gaps = 39/447 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKL-GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           SQ ++ C S K+    + +H H  K   +    +L  + + +Y + G+  D         
Sbjct: 50  SQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYD--------- 100

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                                 A+KVFD++ E  + +WN+MI    S G    A+E++ +
Sbjct: 101 ----------------------AVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKE 138

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M++ GV    FTF  +L    +      G +IHG  ++ G     V + N+LI MY K G
Sbjct: 139 MRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYG-GFVFVCNALIAMYAKCG 197

Query: 195 VLYYAFGVFLN--MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            L  A  +F +  ME+ D +SWNS+IS     G    AL  F  M+  G   + YT    
Sbjct: 198 DLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSA 257

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           + AC     +  G+ + A+ +K    ++  V +A I +++ C ++ED+ R+F+ +   D 
Sbjct: 258 LQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSM 371
              N ++S   +      A+  FQ M     +P + + L+ + +S     +  G + H+ 
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAY 377

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK G DSN  + +SL++MY K   +      F  + ++DL+SW TI+ G  QN    + 
Sbjct: 378 AIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDA 437

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACN 458
           L++  ++  E +  D + + ++LLAC+
Sbjct: 438 LNLLRKVQLEKMDVDPMMIGSILLACS 464



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 160/313 (51%), Gaps = 3/313 (0%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G+Q+H   +++   L +V L    + MYGK G  Y A  VF  M E  I +WN++I  C
Sbjct: 64  QGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGAC 123

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            ++G    A++ +  MR  G S D +T   V+ AC   +    G ++  ++VK G+    
Sbjct: 124 VSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFV 183

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
            V +A I +++KC  L  +  LF+   +++ D    N +IS +   G    AL LF+ M 
Sbjct: 184 FVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQ 243

Query: 340 REDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
              +    +T    L +   P  ++ G   H++ +KS   ++  V+++L+ MYA  G ++
Sbjct: 244 EVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQME 303

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F  +  +D VSWNT++ G+ QN   ++ ++ F+++ + G  PD++++  ++ A  
Sbjct: 304 DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363

Query: 459 YGGFVDKGMLVFS 471
               +  GM V +
Sbjct: 364 RSANLLAGMEVHA 376


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 295/605 (48%), Gaps = 76/605 (12%)

Query: 6   KKAHVNKASLSYCSQLIDR--CLSFKSFD----FAKTIHGH-----LFKLGFNAHTYLGN 54
            + HV+  SLS    +  R  C  F   D     +  +HG        K GF +  +L N
Sbjct: 203 NRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNN 262

Query: 55  RCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVS 114
             LD+Y++ G                               N+D+A  +F  +PE  VVS
Sbjct: 263 SLLDMYAKNG-------------------------------NMDSAEMIFVNMPEVSVVS 291

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG 174
           WN MI+GY     S  A+E   +MQ  G  P   T+  +L     AC         I+SG
Sbjct: 292 WNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV----AC---------IKSG 338

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
               ++  G  + D                 M    + SWN+++SG   +   + A+  F
Sbjct: 339 ----DIEAGRQMFD----------------GMSSPSLSSWNTILSGYSQNENHKEAVKLF 378

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M++    PD  T++I++++   +  L+ G+QV A+S K  F ++  + S  I ++SKC
Sbjct: 379 REMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKC 438

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
            ++E + R+F+++   D    N M++        + A   F+ M  + + P++F+ + VL
Sbjct: 439 GKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVL 498

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           S    +  +  G Q HS   + G+ ++A V S+L++MY+K G +D++  +F  +  ++ V
Sbjct: 499 SCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTV 558

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           +WN ++ G  QNG   E + ++E+++  G  PD IT  AVL AC++ G VD G+ +F++M
Sbjct: 559 TWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSM 618

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
           ++E+GV P  +HY CIID L +AG+L +A  +   MP +    IWE +L +  +Y DV L
Sbjct: 619 QQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSL 678

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
               AE +  L   +  PY LL   Y+  GRW+    V+++M  N + K  G SWI  KN
Sbjct: 679 ARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKN 738

Query: 594 RIYTF 598
            +  F
Sbjct: 739 GMQAF 743



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/571 (23%), Positives = 247/571 (43%), Gaps = 115/571 (20%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           +Y + L+  C+  K+    K IH H+ +   +  T+L NR ++ Y++    D   +LFD+
Sbjct: 6   TYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY---ASCGYSDYAL 132
           +P+++  +WN  L    K+  L+ A  +F E+PE ++VSWN++IS      +CG      
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACG------ 119

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
                                 + V   C G++ HG  I+ GL  +N+ +GN+L+ MY K
Sbjct: 120 ----------------------ALVDVEC-GRRCHGISIKIGLD-NNIYVGNALLGMYAK 155

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              +  A   F ++ E + +S+ +++ G  +S     A   F  M  +    D  ++S V
Sbjct: 156 CRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSV 215

Query: 253 INACTK--------------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
           +  C++              L +   G+QV  L++K GF S+  + ++ +D+++K   ++
Sbjct: 216 LGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMD 275

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSI 357
            +  +F  +        NVMI+ YG+      A+E  Q M      P E T ++ +++ I
Sbjct: 276 SAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACI 335

Query: 358 PIPPVEHGSQ-FHSMA---------IKSGFDSN-------------------------AV 382
               +E G Q F  M+         I SG+  N                         A+
Sbjct: 336 KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAI 395

Query: 383 VASS-------------------------------LMEMYAKTGSIDSSTEIFVKLDKRD 411
           + SS                               L+ MY+K G ++ +  IF ++ + D
Sbjct: 396 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 455

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           +V WN++M GL+ N    E    F+++ E+G+ P + + A VL  C     + +G  V S
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 515

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
            +  E G M      + +ID+  + G +  A
Sbjct: 516 QIARE-GYMNDAFVGSALIDMYSKCGDVDAA 545



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 25/384 (6%)

Query: 148 FTFSILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           +  S+L + +    H  GK IH  M+RS LS  +  L N LI+ Y K   +  +  +F  
Sbjct: 7   YLASLLQTCIDKKAHLAGKLIHAHMLRSRLS-DDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN--ACTKLRNLD 263
           M + DI +WN+++     +   E A   F  M           IS +    AC  L +++
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVE 125

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G++   +S+K+G  +N  V +A + +++KC  + D+++ F  +   +      M+    
Sbjct: 126 CGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLA 185

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVL---------------SSIPIPPVEHGSQF 368
                  A  LF+LMLR  I     +LS VL               S+  +    HG Q 
Sbjct: 186 DSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQV 245

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H + IK GF+S+  + +SL++MYAK G++DS+  IFV + +  +VSWN ++ G  Q  ++
Sbjct: 246 HCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQS 305

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
           ++ ++  + +   G  PD IT   +L+AC   G ++ G  +F  M       P    +  
Sbjct: 306 SKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS-----PSLSSWNT 360

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQ 512
           I+    Q     +A+ +   M F+
Sbjct: 361 ILSGYSQNENHKEAVKLFREMQFR 384


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/480 (32%), Positives = 260/480 (54%), Gaps = 2/480 (0%)

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV-LYYAFGVFLNMEEL 209
           S+L    SS    KQIH   IR G+SL+N  +G  LI     L   + YA+ VF  +   
Sbjct: 22  SLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNP 81

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ +WN++I G   S     A   +  M  S   PD +T   ++ A +K  N+ +G+ + 
Sbjct: 82  NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIH 141

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +++++ GF S   V ++ + +++ C   E + ++FE +   D    N MI+ +   G   
Sbjct: 142 SVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPN 201

Query: 330 VALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL LF+ M  E + P  FT+  +LS S  +  +E G + H   +K G   N+ V +SL+
Sbjct: 202 EALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLL 261

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           ++YAK G+I  +  +F ++ +R+ VSW ++++GL  NG   E L++F+E+  +GL P  I
Sbjct: 262 DLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEI 321

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T   VL AC++ G +D+G   F  MKEE G++P  EHY C++DLL +AG + +A +    
Sbjct: 322 TFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQN 381

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP QP   IW ++L A  I+G + L E     +++L+      Y LL+  YA   RW  +
Sbjct: 382 MPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDV 441

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             +++ M K+G+ K  G S + + NR+Y F  G+  H   Q +Y +L  +T  ++ EG V
Sbjct: 442 QVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYV 501



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 167/340 (49%), Gaps = 7/340 (2%)

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
           S  +  A  VF  I  P+V +WN++I GYA       A   + +M +  V P   T+  L
Sbjct: 65  SAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFL 124

Query: 154 LSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L  +S + +   G+ IH   IR+G   S V + NSL+ +Y   G    A+ VF  M+E D
Sbjct: 125 LKAISKSLNVREGEAIHSVTIRNGFE-SLVFVQNSLLHIYAACGDTESAYKVFELMKERD 183

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +++WNS+I+G   +G    AL  F  M   G  PD +T+  +++A  +L  L+ G++V  
Sbjct: 184 LVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHV 243

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             +KVG   NS V ++ +DL++KC  + ++ R+F ++   +      +I      GFGE 
Sbjct: 244 YLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEE 303

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVVASSLM 388
           ALELF+ M  + + P+E T   VL +     +  E    F  M  + G          ++
Sbjct: 304 ALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMV 363

Query: 389 EMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGR 427
           ++ ++ G +  + E    +  + + V W T++   T +G 
Sbjct: 364 DLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 9/242 (3%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           ++A KVF+ + E D+V+WNSMI+G+A  G  + AL +F +M ++GV P GFT   LLS  
Sbjct: 170 ESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSAS 229

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G+++H  +++ GLS  N  + NSL+D+Y K G +  A  VF  M E + +SW
Sbjct: 230 AELGALELGRRVHVYLLKVGLS-KNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSW 288

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSV 273
            SLI G   +G+GE AL+ F  M   G  P E T   V+ AC+    LD+G + F  +  
Sbjct: 289 TSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKE 348

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI----STYGRYGFGE 329
           + G +         +DL S+   ++ +    + +     AVI   +    + +G  G GE
Sbjct: 349 ECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGE 408

Query: 330 VA 331
           +A
Sbjct: 409 IA 410



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 99/229 (43%), Gaps = 56/229 (24%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + +  + +H +L K+G + ++++ N  LDLY++ G   +  ++F E+ ++N +SW     
Sbjct: 234 ALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSW----- 288

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                      S+I G A  G+ + ALE+F +M+ QG+ PS  T
Sbjct: 289 --------------------------TSLIVGLAVNGFGEEALELFKEMEGQGLVPSEIT 322

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLS-----------LSNVVLGNSLIDMYGKLGVLYY 198
           F  +L   S        H  M+  G             +  +     ++D+  + G++  
Sbjct: 323 FVGVLYACS--------HCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQ 374

Query: 199 AFGVFLNME-ELDIISWNSLISGCFNSGY---GELALDQFYSM--RYSG 241
           A+    NM  + + + W +L+  C   G+   GE+A     ++  ++SG
Sbjct: 375 AYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSG 423


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/577 (29%), Positives = 294/577 (50%), Gaps = 38/577 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++ I  C      DF   +H  + KLGF+ + Y+    +D+Y +                
Sbjct: 72  TKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGK---------------- 115

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                W+I       SD    A KVFDE+  P VV+WNS+++GY   GY   A+ +F +M
Sbjct: 116 ----CWSI-------SD----AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEM 160

Query: 139 QLQGVRPSGFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G+ P+ F+ S   +  S +     G Q+H   ++   S SNVV+G  LIDMY K   
Sbjct: 161 LKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFS-SNVVVGTGLIDMYSKCCN 219

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +  VF  M   ++ +W S+ISG   +     A+     M +    P+  T + ++++
Sbjct: 220 LQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSS 279

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAV 314
            +  R+ DK KQ+    +  G+ SN+ +    +  +S+C   LED  ++   +   D   
Sbjct: 280 FSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQIS 339

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAI 373
            N +I+ +   G GE ALE F  M RE      FT + +  +I +   +E G Q H +  
Sbjct: 340 WNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVY 399

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+G+  N  V + L+ MYA++G+I  S  +F  +++ DL+SWN+++ G   +G   E +D
Sbjct: 400 KTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAID 459

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-EHYACIIDL 492
           +FE++    + PD  +  AVL AC++ G +DKG+  F  M+    V P + EHYA ++DL
Sbjct: 460 LFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDL 519

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
             +AG+L +A     ++P +PG SI++++L A  I+G+  +    A+++++L    P  Y
Sbjct: 520 FGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATY 579

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            +L+ A    G W+    ++++M   G+ K  G SW+
Sbjct: 580 IMLSNALGRDGYWDDAASIRRLMSNRGVKKEPGFSWM 616



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 168/325 (51%), Gaps = 4/325 (1%)

Query: 145 PSGFTFSILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           P   T +I + T S+    G Q+H ++I+ G SL N  +  +L+DMYGK   +  A  VF
Sbjct: 68  PPILTKTISICTKSTLLDFGIQVHSTIIKLGFSL-NPYIFTALVDMYGKCWSISDAHKVF 126

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M    +++WNSL++G   +GY  +A+  F  M   G  P  +++S  +  C++L+  D
Sbjct: 127 DEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGD 186

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G Q+ A+S+K+ F SN +V +  ID++SKC  L+DS R+F+ +   +      MIS Y 
Sbjct: 187 LGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYA 246

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAV 382
           R      A+ L + ML  ++ P   T + +LSS   P   +   Q H   I  G++SN  
Sbjct: 247 RNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNY 306

Query: 383 VASSLMEMYAK-TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           +A +L+  Y++  GS++   ++   +   D +SWN ++ G T  G   E L+ F ++  E
Sbjct: 307 IAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRRE 366

Query: 442 GLPPDRITLAAVLLACNYGGFVDKG 466
               D  T  ++  A      +++G
Sbjct: 367 KFDVDFFTFTSIFKAIGMTSALEEG 391



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 120/215 (55%), Gaps = 1/215 (0%)

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G  P    ++  I+ CTK   LD G QV +  +K+GF  N  + +A +D++ KC  + D+
Sbjct: 63  GSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDA 122

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPI 359
            ++F+++        N +++ Y + G+  +A+ LF  ML++ I PT F+LS  ++    +
Sbjct: 123 HKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQL 182

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
              + GSQ H+M++K  F SN VV + L++MY+K  ++  S  +F  +  +++ +W +++
Sbjct: 183 QKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMI 242

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            G  +N    E + +  E+L   L P+ +T  ++L
Sbjct: 243 SGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLL 277


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 312/613 (50%), Gaps = 54/613 (8%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAH-----TYLGNR 55
           +++Y ++  V++A   + S      +S+ +      +H  +F +    H         N 
Sbjct: 116 ITAYHRRNMVDEAFELFSSMPQRNSVSYATM-ITGFVHAGMFDMAEKLHREKPVIVSSNV 174

Query: 56  CLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSW 115
            ++ YS+ G  +D +++FD + +K+ +SW+  + GL +   +  A K+FD++P+ +VV+W
Sbjct: 175 LINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTW 234

Query: 116 NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIR 172
             MI GY    +      +F  M+ +GV  +  T ++LL    S      G QIHG ++ 
Sbjct: 235 TLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLS 294

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
            G  + +  L NS+I MY +   +  A   F  M + DI++WNSLI+G   SG  E A+ 
Sbjct: 295 LGFDV-DAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVF 353

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            F +M      P +  +S     C                   GF S             
Sbjct: 354 LFENM------PQKDVVSWTTLIC-------------------GFASEG----------- 377

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
              R+++ + LF+ +   D      +IS        E+A   F  ML+  I+P  FTLSC
Sbjct: 378 ---RIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSC 434

Query: 353 VLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
           VLS+   +  +  G Q H++  K   +++  + +SL+ MY+K G++D + ++F  +   +
Sbjct: 435 VLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPN 494

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           +V++NTI+ GL QNG   E L++F ++ ++ L P+ IT   VL AC + G V++G   F 
Sbjct: 495 VVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFD 554

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            M+  Y + P  +HYAC++DLLC+AG   +A+ + S+MPF P   +W ++L AS  +  +
Sbjct: 555 LMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRL 614

Query: 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRG--RWEAIVRVKKVMRKNGINKVTGCSWI 589
            + E  A+ + +L+  S  PY +L+  +++ G  R   ++R+ K  R  G+ K  GCSWI
Sbjct: 615 DVAELAAQNLFELEPNSATPYVILSNLHSISGDERKHELIRLMKKSR--GLKKSPGCSWI 672

Query: 590 GIKNRIYTFNAGE 602
            +K+ ++ F+AG 
Sbjct: 673 ILKDEVHLFHAGH 685



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 374 KSGFDSNAVVASSLMEMY--------AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
           +  FDS     SS   +Y         + G I  +  IF ++  ++ VSW  ++    +N
Sbjct: 32  RGNFDSATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAEN 91

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
               +  +VF ++ +    P+  +  A++ A +    VD+   +FS+M +   V      
Sbjct: 92  SEINKAREVFNKIPD----PNVASYNAMITAYHRRNMVDEAFELFSSMPQRNSV-----S 142

Query: 486 YACIIDLLCQAGQLGKAIDITSTMP 510
           YA +I     AG    A  +    P
Sbjct: 143 YATMITGFVHAGMFDMAEKLHREKP 167


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 302/556 (54%), Gaps = 11/556 (1%)

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
           IC+    K   ++ A+KV  + P+ DV  W S+ISG+        A+     M+L G+ P
Sbjct: 261 ICMYA--KCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILP 318

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-VLYYAFG 201
           + FT++ LL+  SS      G+Q H  +I  GL   ++ +GN+L+DMY K          
Sbjct: 319 NNFTYASLLNASSSVLSLELGEQFHSRVIMVGLE-GDIYVGNALVDMYMKCSHTTTNGVK 377

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            F  +   ++ISW SLI+G    G+ E ++  F  M+ +G  P+ +T+S ++ AC+K+++
Sbjct: 378 AFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKS 437

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           + + K++    +K     +  V +A +D ++     +++  +   ++  D      + + 
Sbjct: 438 IIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAAR 497

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
             + G  E+AL +   M  ++++  EF+L+  +S+   +  +E G Q H  + KSGF+  
Sbjct: 498 LNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERC 557

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V++SL+  Y+K GS+  +  +F  + + D VSWN ++ GL  NG  ++ L  F+++  
Sbjct: 558 NSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRL 617

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500
            G+ PD +T  +++ AC+ G  +++G+  F +M++ Y + P  +HY C++DLL + G+L 
Sbjct: 618 AGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLE 677

Query: 501 KAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
           +A+ +  TMPF+P   I++++L A  ++G+V L E++A R ++L    P  Y LL   Y 
Sbjct: 678 EAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYD 737

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             G  +   + +K+MR+ G+ +     W+ +K++IY F+A E    G  +I   L  L  
Sbjct: 738 NAGLPDFGDKTRKLMRERGLRRSPRQCWMEVKSKIYLFSARE--KIGNDEINEKLESLIT 795

Query: 621 EMEDEGCVYLEC-DKL 635
           E+++ G  Y E  DKL
Sbjct: 796 EIKNRGYPYQESEDKL 811



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 215/448 (47%), Gaps = 41/448 (9%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C Q++  C S ++      +H  + K+G     YL N  L LY++         LFDE+P
Sbjct: 20  CLQVLSLCNS-QTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMP 78

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            ++ +SW   L    ++ +   AL++FD            M+ G   C            
Sbjct: 79  HRDVVSWTTLLSAHTRNKHHFEALQLFD------------MMLGSGQC------------ 114

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
                  P+ FT S  L + S+      G +IH S+++ GL L N VLG +L+D+Y K  
Sbjct: 115 -------PNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLEL-NHVLGTTLVDLYTKCD 166

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
                  +   +++ D++SW ++IS    +     AL  +  M  +G  P+E+T   ++ 
Sbjct: 167 CTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLG 226

Query: 255 ACTKLRNLDK--GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
             + L  L K  GK + +  +  G   N ++ +A I +++KC R+ED++++ +Q  ++D 
Sbjct: 227 MPSFL-GLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDV 285

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSM 371
            +   +IS + +      A+     M    I P  FT + +L +S  +  +E G QFHS 
Sbjct: 286 CLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSR 345

Query: 372 AIKSGFDSNAVVASSLMEMYAK-TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            I  G + +  V ++L++MY K + +  +  + F  +   +++SW +++ G  ++G   E
Sbjct: 346 VIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEE 405

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACN 458
           ++ +F E+   G+ P+  TL+ +L AC+
Sbjct: 406 SVQLFAEMQAAGVQPNSFTLSTILGACS 433



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 204/454 (44%), Gaps = 38/454 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C +   F+F   IH  + KLG   +  LG   +DLY+                 
Sbjct: 121 SSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYT----------------- 163

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K D      K+   + + DVVSW +MIS          AL+++ KM
Sbjct: 164 --------------KCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKM 209

Query: 139 QLQGVRPSGFTFSILLSTVS----SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
              G+ P+ FTF  LL   S       +GK +H  +I  G+ + N++L  ++I MY K  
Sbjct: 210 IEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEM-NLMLKTAIICMYAKCR 268

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  V     + D+  W S+ISG   +     A++    M  SG  P+ +T + ++N
Sbjct: 269 RMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLN 328

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR-LEDSVRLFEQLDRWDYA 313
           A + + +L+ G+Q  +  + VG   +  V +A +D++ KC+    + V+ F  +   +  
Sbjct: 329 ASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVI 388

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMA 372
               +I+ +  +GF E +++LF  M    ++P  FTLS +L +   +  +    + H   
Sbjct: 389 SWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYI 448

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           IK+  D +  V ++L++ YA  G  D +  +   ++ RD++++ T+   L Q G     L
Sbjct: 449 IKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMAL 508

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            V   +  + +  D  +LA+ + A    G ++ G
Sbjct: 509 RVITHMCNDEVKMDEFSLASFISAAAGLGIMETG 542



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 135/321 (42%), Gaps = 44/321 (13%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   KS    K +HG++ K   +    +GN  +D Y+  G +D+   +   +  
Sbjct: 426 STILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNH 485

Query: 79  KNCISWNICLRGLLKSDNLDTALKVF-----DEIPEPDVVSWNSMISGYASCGYSDYALE 133
           ++ I++      L +  + + AL+V      DE+ + D  S  S IS  A  G  +    
Sbjct: 486 RDIITYTTLAARLNQQGDHEMALRVITHMCNDEV-KMDEFSLASFISAAAGLGIMET--- 541

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
                                        GKQ+H    +SG    N V  NSL+  Y K 
Sbjct: 542 -----------------------------GKQLHCYSFKSGFERCNSV-SNSLVHSYSKC 571

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A+ VF ++ E D +SWN LISG  ++G    AL  F  MR +G  PD  T   +I
Sbjct: 572 GSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLI 631

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQL----D 308
            AC++   L++G   F    K   ++  +      +DL  +  RLE+++ + E +    D
Sbjct: 632 FACSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPD 691

Query: 309 RWDYAVINVMISTYGRYGFGE 329
              Y  +    + +G    GE
Sbjct: 692 SVIYKTLLNACNLHGNVPLGE 712



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 85/214 (39%), Gaps = 57/214 (26%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +H + FK GF     + N  +  YS+ G+  D                         
Sbjct: 542 GKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRD------------------------- 576

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                 A +VF +I EPD VSWN +ISG AS G    AL  F  M+L GV+P   TF  L
Sbjct: 577 ------AYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSL 630

Query: 154 LSTVSSACHGKQIHGSMIRSGL--------------SLSNVVLGNSLIDMYGKLGVLYYA 199
           +   S         GS++  GL               L + V    L+D+ G+ G L  A
Sbjct: 631 IFACS--------QGSLLNQGLDYFYSMEKTYHITPKLDHYV---CLVDLLGRGGRLEEA 679

Query: 200 FGVFLNME-ELDIISWNSLISGCFNSGYGELALD 232
            GV   M  + D + + +L++ C   G   L  D
Sbjct: 680 MGVIETMPFKPDSVIYKTLLNACNLHGNVPLGED 713



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 345 PTEFTLSC--VLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           P  F  +C  VLS      ++ G+  HS  IK G   +  ++++L+ +YAK   +  +  
Sbjct: 13  PCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARH 72

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F ++  RD+VSW T++   T+N    E L +F+ +L  G  P+  TL++ L +C+  G 
Sbjct: 73  LFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGE 132

Query: 463 VDKGMLVFSAM 473
            + G  + +++
Sbjct: 133 FEFGAKIHASV 143


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 170/611 (27%), Positives = 301/611 (49%), Gaps = 71/611 (11%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDV-LQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
           + K GF +   +G   L++Y+R  ++ D+ ++ FD + ++N  +W+  +  L     +D 
Sbjct: 249 VLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDA 308

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A+ V+   P   + S  ++++G A CG    A  +F ++      P              
Sbjct: 309 AIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQI------PDPI----------- 351

Query: 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS 219
                               VV  N++I  Y + G++  A  +F  M   + ISW  +I+
Sbjct: 352 --------------------VVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIA 391

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS 279
           G   +G  E ALD   ++  +G  P   +++    AC+ +  L+ G+QV +L+VK G   
Sbjct: 392 GYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQF 451

Query: 280 NSIVLSATIDLFSKC-------------------------------NRLEDSVRLFEQLD 308
           NS V +A I ++ KC                               N LED+  +F+ + 
Sbjct: 452 NSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNML 511

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
             D      +IS Y +   G+ A+E F+ ML E  +P    L+ +LS    +   + G Q
Sbjct: 512 SRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQ 571

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H++AIK G DS  +VA++LM MY K G  DS  ++F  +++RD+ +WNT + G  Q+G 
Sbjct: 572 IHTVAIKHGMDSELIVANALMSMYFKCGCADSH-KVFDSMEERDIFTWNTFITGCAQHGL 630

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             E + ++E +   G+ P+ +T   +L AC++ G VD+G   F +M  +YG+ P  EHYA
Sbjct: 631 GREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYA 690

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           C++DLL + G +  A      MP +P   IW ++L A  I+ + ++    AE++   +  
Sbjct: 691 CMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPS 750

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           +   Y +L+  Y+  G W  +  ++K+M++ G++K  GCSW+ I+N++++F  G+ QH  
Sbjct: 751 NAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEK 810

Query: 608 GQKIYLVLRLL 618
            ++I   L+ L
Sbjct: 811 IEEIDYTLQDL 821



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 133/248 (53%), Gaps = 5/248 (2%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    + +  + +H    K G   ++Y+ N  + +Y +    + V Q+F+ +  K+ +SW
Sbjct: 428 CSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSW 487

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  +  L++++ L+ A  +FD +   DVVSW ++IS YA     D A+E F  M  +  +
Sbjct: 488 NSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEK 547

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+    +ILLS    + SA  G+QIH   I+ G+  S +++ N+L+ MY K G    +  
Sbjct: 548 PNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMD-SELIVANALMSMYFKCGCA-DSHK 605

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +MEE DI +WN+ I+GC   G G  A+  +  M   G  P+E T   ++NAC+    
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 262 LDKGKQVF 269
           +D+G Q F
Sbjct: 666 VDEGWQFF 673



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 206/440 (46%), Gaps = 30/440 (6%)

Query: 49  HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP 108
           +T   N  +  Y + G      +LFD +P ++  SWN  + G   S  +  A  +F ++P
Sbjct: 125 NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMP 184

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHG 168
           + ++V+W  MISGY          ++F  M  +G  P    F+ +LS V+    G Q  G
Sbjct: 185 QRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVT----GLQDLG 240

Query: 169 SM-------IRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVFLNMEELDIISWNSLISG 220
            +       +++G   S+VV+G S++++Y +    L  A   F  M E +  +W+++I+ 
Sbjct: 241 VLEVLRPLVLKTGFE-SDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAA 299

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             + G  + A+  +      G  P    +  + +    L  L +  ++    +    + +
Sbjct: 300 LSHGGRIDAAIAVY------GRDP----VKSIPSQTALLTGLARCGRITEARILFEQIPD 349

Query: 281 SIVLS--ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            IV+S  A I  + +   ++++  LF+++   +      MI+ Y + G  E AL+L Q +
Sbjct: 350 PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQAL 409

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            R  + P+  +L+    +   I  +E G Q HS+A+K+G   N+ V ++L+ MY K  ++
Sbjct: 410 HRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNM 469

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           +   ++F ++  +D VSWN+ +  L QN    +   +F+ +L      D ++   ++ A 
Sbjct: 470 EYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR----DVVSWTTIISAY 525

Query: 458 NYGGFVDKGMLVFSAMKEEY 477
                 D+ +  F  M  E+
Sbjct: 526 AQAERGDEAVEFFKTMLHEH 545



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 198/430 (46%), Gaps = 73/430 (16%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           +R L +   L  A +VFD +P  D+++WNSMIS Y + G  + A  +F  +    VR   
Sbjct: 40  IRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR--- 96

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            T +ILLS  +    G+ +    +  G+   N V  N+++  Y + G +  A  +F  M 
Sbjct: 97  -TATILLSGYARL--GRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMP 153

Query: 208 ELDIISWNSLISG-CFN-------------------------SGYGEL-----ALDQFYS 236
             D+ SWNS+++G C +                         SGY  +       D F  
Sbjct: 154 SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRM 213

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK-CN 295
           M + G SPD+   + V++A T L++L   + +  L +K GF S+ ++ ++ ++++++  +
Sbjct: 214 MHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDAS 273

Query: 296 RLEDSVRLFE-QLDRWDY------------AVINVMISTYGRYGFGEVALELFQLM-LRE 341
            L+ +++ F+  ++R +Y              I+  I+ YGR     +  +   L  L  
Sbjct: 274 ALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLAR 333

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
             R TE  +  +   IP P V                   V  ++++  Y + G +D + 
Sbjct: 334 CGRITEARI--LFEQIPDPIV-------------------VSWNAMITGYMQNGMVDEAK 372

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F ++  R+ +SW  ++ G  QNGR+ E LD+ + L   G+ P   +L +  LAC++ G
Sbjct: 373 ELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIG 432

Query: 462 FVDKGMLVFS 471
            ++ G  V S
Sbjct: 433 ALETGRQVHS 442


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 179/593 (30%), Positives = 297/593 (50%), Gaps = 71/593 (11%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A K+FDE+P  D V+WNSMI+ Y+  G+   AL +F +M+    +P  FTF+  LS  + 
Sbjct: 24  ARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHFTFTATLSACAG 83

Query: 160 ACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           A     G +IH  +I  G   S++ + NSLIDMYGK    + A  VF  M +++ +SW S
Sbjct: 84  AGSFPFGTKIHALVIILGYH-SSLPVNNSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCS 142

Query: 217 LISGCFNSG-----------------------------YGE--LALDQFYSMRYSGYSPD 245
           L+    NSG                             YGE  L LD F  MR S   PD
Sbjct: 143 LLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEPD 202

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           ++T S +I+ACT+      G  +  L ++ G+ S     ++ + L++K   L D++++ E
Sbjct: 203 QWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVE 262

Query: 306 QLDR-----WDYAVINV---------------------------MISTYGRYGFGEVALE 333
              R     W+ A+I+                            MI+ Y R G+GE AL 
Sbjct: 263 STGRLTQVSWN-AIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALR 321

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F  M      P +FT   VL +   +  + HG   H  AI++GF +   V + L+ MYA
Sbjct: 322 FFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGNGLVNMYA 381

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G +D S   F  +  +DLVS+N ++     +G+A+E L ++E+++  G  PD++T   
Sbjct: 382 KCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIG 441

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS--TMP 510
           +L+ C++ G +++G L F++MK  +G+    +H AC++D+L + G L +A ++    +  
Sbjct: 442 LLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKELVKKYSKT 501

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
                S  E++L A + +G+V++   + + +  L+    + Y L +  Y +RG+W+    
Sbjct: 502 SDVEASSCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEISYVLQSNLYCVRGQWKEAEM 561

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           V+K M   G+ K+ GCSWI ++N++  F AG   +    ++Y  L  L +EM 
Sbjct: 562 VRKAMVDEGLKKMPGCSWIEVRNKVTAFVAGNHLYPYTDELYKTLYFLEFEMR 614



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 242/540 (44%), Gaps = 84/540 (15%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C    SF F   IH  +  LG+++   + N  +D+Y +   +    Q+F E+   N 
Sbjct: 78  LSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEMGDINE 137

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SW   L     S     A ++F+ +P    ++WN+MI+G    G  +  L+MF +M+  
Sbjct: 138 VSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRES 197

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLS----NVVLG----------- 183
            + P  +T+S L+S  + +     G  +HG +IRSG S +    N +L            
Sbjct: 198 LLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDA 257

Query: 184 ---------------NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
                          N++ID Y K+G +  A+ +F ++ E +I+SW S+I+G   +GYGE
Sbjct: 258 LKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGE 317

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            AL  F +M  + + PD++T   V++AC+ L  L  G+ V   +++ GF +   V +  +
Sbjct: 318 EALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGNGLV 377

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
           ++++KC  L+ S+  F  +   D    N ++  +G +G    AL+L++ M+    +P + 
Sbjct: 378 NMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKM 437

Query: 349 T-----LSCVLSSIPIPPVEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           T     ++C  S +    +E G   F+SM    G    A   + +++M  + G +  + E
Sbjct: 438 TFIGLLMTCSHSGL----IEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKE 493

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +  K  K                     T DV           +  +  A+L AC+  G 
Sbjct: 494 LVKKYSK---------------------TSDV-----------EASSCEALLGACSAHGE 521

Query: 463 VDKGMLVFSAMKEEYGVMPGEE-HYACIIDLLCQAGQLGKAIDITSTMPFQ-----PGCS 516
           V+ G  +   +K    + P +E  Y    +L C  GQ  +A  +   M  +     PGCS
Sbjct: 522 VEMGTYLGKTLKT---LEPNKEISYVLQSNLYCVRGQWKEAEMVRKAMVDEGLKKMPGCS 578



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 146/295 (49%), Gaps = 5/295 (1%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI  C     F     +HG + + G+++     N  L LY++FG+ +D L++ +   +
Sbjct: 207 SALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVESTGR 266

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
              +SWN  +   +K   ++ A  +F  +PE ++VSW SMI+GYA  GY + AL  F  M
Sbjct: 267 LTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAM 326

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                 P  FTF  +L   SS     HG+ +HG  IR+G S + + +GN L++MY K G 
Sbjct: 327 ASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFS-TYLYVGNGLVNMYAKCGD 385

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +   F ++   D++S+N+L+      G    AL  +  M   G  PD+ T   ++  
Sbjct: 386 LDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIGLLMT 445

Query: 256 CTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           C+    +++G+  F     V  LS  +  ++  +D+  +   L ++  L ++  +
Sbjct: 446 CSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKELVKKYSK 500



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 156/391 (39%), Gaps = 98/391 (25%)

Query: 143 VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           +R + F  +  +S + S+  G  +H   +   +   + V  NS+I  Y +L         
Sbjct: 1   MRSNLFRITSKISALGSS--GYIVHARKLFDEMPNRDTVAWNSMITSYSQL--------- 49

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
                                 G+ + AL  FY MR +   PD +T +  ++AC    + 
Sbjct: 50  ----------------------GFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAGSF 87

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKC---------------------------- 294
             G ++ AL + +G+ S+  V ++ ID++ KC                            
Sbjct: 88  PFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEMGDINEVSWCSLLFAY 147

Query: 295 ---NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
               R  ++  +F  + R      N MI+  GRYG  E+ L++F+ M    + P ++T S
Sbjct: 148 TNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYS 207

Query: 352 CVLSSIPIPPVE--HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI------ 403
            ++S+     +E   G   H + I+SG+ S     +S++ +YAK GS++ + ++      
Sbjct: 208 ALISAC-TESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVESTGR 266

Query: 404 -------------------------FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
                                    F  L ++++VSW +++ G  +NG   E L  F  +
Sbjct: 267 LTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAM 326

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
                 PD  T  AVL AC+    +  G +V
Sbjct: 327 ASNCFLPDDFTFGAVLHACSSLAVLGHGRMV 357



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 139/337 (41%), Gaps = 47/337 (13%)

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           SN   +++ I        +  + +LF+++   D    N MI++Y + GF + AL +F  M
Sbjct: 3   SNLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQM 62

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK---- 393
              + +P  FT +  LS+         G++ H++ I  G+ S+  V +SL++MY K    
Sbjct: 63  RNTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDA 122

Query: 394 ---------------------------TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
                                      +G    ++EIF  + ++  ++WNT++ GL + G
Sbjct: 123 FSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYG 182

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACN-----YGGFVDKGMLVFSAMKEEYGVMP 481
                LD+F E+ E  L PD+ T +A++ AC        G +  G+++ S      G   
Sbjct: 183 EIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRS------GWSS 236

Query: 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
             E    I+ L  + G L  A+ +  +       S W +I+ A   Y  V          
Sbjct: 237 AMEAKNSILSLYAKFGSLNDALKVVESTGRLTQVS-WNAIIDA---YMKVGYVNEAYLMF 292

Query: 542 MDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
             L   + + ++ +   YA  G  E  +R    M  N
Sbjct: 293 QSLPEKNIVSWTSMITGYARNGYGEEALRFFVAMASN 329


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 183/575 (31%), Positives = 297/575 (51%), Gaps = 41/575 (7%)

Query: 94  SDNLDTALKVFDEIPEP---DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           S +L  AL +F+E  +    +V  WNS+I GY+       +L +FS+M   GV+P+  TF
Sbjct: 75  SGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTF 134

Query: 151 SILLS--TVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN-- 205
             L    T + A H GKQ+H   ++  L   N  +  S+I MY  +G + +A  VF    
Sbjct: 135 PFLFKSCTKAKATHEGKQLHAHALKLALHF-NPHVHTSVIHMYASVGEMDFARLVFDKSS 193

Query: 206 --------------------------MEEL---DIISWNSLISGCFNSGYGELALDQFYS 236
                                      +E+   D++SWN++ISG   SG  E A+  FY 
Sbjct: 194 LRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYE 253

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M+ +   P++ T+ +V++AC   R+ + GK + +     GF SN  + +A ID++ KC  
Sbjct: 254 MQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE 313

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            + +  LF+ ++  D    N MI  Y      E AL LF++MLR +++P + T   +L +
Sbjct: 314 TDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHA 373

Query: 357 IP-IPPVEHGSQFHSMAIKSGFDS-NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
              +  ++ G   H+   K+  +S NA + +SL++MYAK G I+++  +F  +  R+L S
Sbjct: 374 CACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS 433

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGL-PPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           WN ++ G   +G A   L +F E++ +GL  PD IT   VL AC   G VD G   F +M
Sbjct: 434 WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSM 493

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            ++YG+ P  +HY C+IDLL +A +  +A  +   M  +P  +IW S+L A   +G V+ 
Sbjct: 494 IQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEF 553

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E VAER+  L+  +   + LL+  YA  GRW+ + R++  +   G+ KV GC+ I I  
Sbjct: 554 GEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDG 613

Query: 594 RIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            ++ F  G+  H     IY +L  +   +E+ G V
Sbjct: 614 DVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFV 648



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 219/449 (48%), Gaps = 12/449 (2%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L   C   K+    K +H H  KL  + + ++    + +Y+  G  D    +FD+   ++
Sbjct: 137 LFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRD 196

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +S+   + G +    LD A ++FDEIP  DVVSWN+MISGY   G  + A+  F +MQ 
Sbjct: 197 AVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQE 256

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V P+  T  ++LS      S   GK I GS +R     SN+ L N+LIDMY K G   
Sbjct: 257 ANVLPNKSTMVVVLSACGHTRSGELGKWI-GSWVRDNGFGSNLQLTNALIDMYCKCGETD 315

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  +EE D+ISWN++I G       E AL  F  M  S   P++ T   +++AC 
Sbjct: 316 IARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACA 375

Query: 258 KLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            L  LD GK V A +   +   SN+ + ++ ID+++KC  +E + R+F  +   + A  N
Sbjct: 376 CLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWN 435

Query: 317 VMISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAI 373
            M+S +  +G  E AL LF  M+ + + RP + T   VLS+      V+ G Q F SM  
Sbjct: 436 AMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQ 495

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETL 432
             G          ++++ A+    + +  +   ++ + D   W +++     +GR     
Sbjct: 496 DYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGE 555

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGG 461
            V E L +  L P+    A VLL+  Y G
Sbjct: 556 YVAERLFQ--LEPENAG-AFVLLSNIYAG 581



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 40/284 (14%)

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF---SKCNRLEDSVRLFE---Q 306
           +N   K +N++  KQ+ +L +K G L+N++ + + +  F   S    L  ++ LFE   Q
Sbjct: 32  LNLLEKCKNINTFKQIHSLIIKTG-LNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQ 90

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-G 365
             + +  + N +I  Y        +L LF  ML   ++P   T   +  S       H G
Sbjct: 91  HHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEG 150

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGS----------------------------- 396
            Q H+ A+K     N  V +S++ MYA  G                              
Sbjct: 151 KQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQ 210

Query: 397 --IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
             +D +  +F ++  +D+VSWN ++ G  Q+GR  E +  F E+ E  + P++ T+  VL
Sbjct: 211 GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVL 270

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            AC +    + G  + S +++  G     +    +ID+ C+ G+
Sbjct: 271 SACGHTRSGELGKWIGSWVRDN-GFGSNLQLTNALIDMYCKCGE 313


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 283/556 (50%), Gaps = 16/556 (2%)

Query: 71  QLFD----EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
           + FD    +I +   + WN  L   +K   L  ALK+FDE+P  DV+S N +  G+    
Sbjct: 76  EFFDPVDADIHRNALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNR 135

Query: 127 YSDYALEMFSKMQLQGVRPSGF---TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNV 180
            ++    +  +M   G    GF   T +I+LS   +       K IH   I SG     +
Sbjct: 136 ETESGFVLLKRMLGSG----GFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYD-KEI 190

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            +GN LI  Y K G       VF  M   ++I+W ++ISG   +   E  L  F  MR  
Sbjct: 191 SVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRG 250

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              P+  T    + AC+  + + +G+Q+ AL  K G  S   + SA +D++SKC  +ED+
Sbjct: 251 LVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDA 310

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPI 359
            ++FE     D   + V++    + G  E A++ F  ML+  +      +S +L  S   
Sbjct: 311 WKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVD 370

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             +  G Q HS+ IK  F  N  V + L+ MY+K G +  S  +F ++ KR+ VSWN+++
Sbjct: 371 NSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMI 430

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
               ++G     L ++EE+    + P  +T  ++L AC++ G +DKG  + + MKE +G+
Sbjct: 431 AAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGI 490

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            P  EHY CIID+L +AG + +A     ++P +P C IW+++L A + +GD ++ E  AE
Sbjct: 491 KPRTEHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAE 550

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
           ++ +    S   + L+   Y+ RG+W+   +  K M++ G+ K TG SWI ++ + ++F 
Sbjct: 551 QLFETAPDSSAAHILMANIYSSRGKWKERAKTIKRMKEMGVTKETGISWIEMEKKTHSFV 610

Query: 600 AGELQHHGGQKIYLVL 615
             +  H   + IY VL
Sbjct: 611 VEDKMHPQAEAIYDVL 626



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 198/433 (45%), Gaps = 43/433 (9%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IH      G++    +GN+ +  Y + G S     +F E+  +N I+W   + GL++
Sbjct: 174 TKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIE 233

Query: 94  SDNLDTALKVF----DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           ++  +  L++F      +  P+ V++   +S  A+C  S   +E                
Sbjct: 234 NELHEDGLRLFCLMRRGLVHPNSVTY---LSALAACSGSQMIVE---------------- 274

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
                        G+QIH  + + G+  S + + ++L+DMY K G +  A+ +F + +E+
Sbjct: 275 -------------GQQIHALLWKFGIE-SELCIESALMDMYSKCGSIEDAWKIFESSQEV 320

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +S   ++ G   +G  E A+  F  M  +G   D   +S ++       +L  GKQ+ 
Sbjct: 321 DEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLH 380

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +L +K  F  N+ V +  I+++SKC  L DS  +F ++ + +Y   N MI+ + R+G G 
Sbjct: 381 SLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGL 440

Query: 330 VALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQ-FHSMAIKSGFDSNAVVASSL 387
            AL+L++ M   +++PT+ T LS + +   +  ++ G +  + M    G        + +
Sbjct: 441 AALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCI 500

Query: 388 MEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           ++M  + G +  +      L  K D   W  ++   + +G         E+L E    PD
Sbjct: 501 IDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFETA--PD 558

Query: 447 RITLAAVLLACNY 459
             + A +L+A  Y
Sbjct: 559 S-SAAHILMANIY 570



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 148/341 (43%), Gaps = 42/341 (12%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++  V+  S++Y S L   C   +     + IH  L+K G  +   + +  +D+YS+ G
Sbjct: 247 MRRGLVHPNSVTYLSALA-ACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCG 305

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           + +D                               A K+F+   E D VS   ++ G A 
Sbjct: 306 SIED-------------------------------AWKIFESSQEVDEVSMTVILVGLAQ 334

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVV 181
            G  + A++ F +M   GV       S +L      +S   GKQ+H  +I+      N  
Sbjct: 335 NGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFC-GNTF 393

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N LI+MY K G L  +  VF  M + + +SWNS+I+     G+G  AL  +  M    
Sbjct: 394 VNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLE 453

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDS 300
             P + T   +++AC+ +  +DKG+++     +V G    +   +  ID+  +   ++++
Sbjct: 454 VKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEA 513

Query: 301 VRLFEQLD-RWDYAVINVMI---STYGRYGFGEVALE-LFQ 336
               + L  + D  +   ++   S +G    GE A E LF+
Sbjct: 514 KSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFE 554



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 53/236 (22%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    K +H  + K  F  +T++ N  +++YS+ G   D   +F  +P++N +SW     
Sbjct: 372 SLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSW----- 426

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                     NSMI+ +A  G+   AL+++ +M    V+P+  T
Sbjct: 427 --------------------------NSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVT 460

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSN---VVLG--------NSLIDMYGKLGVLYY 198
           F  LL   S        H  +I  G  L N    V G          +IDM G+ G++  
Sbjct: 461 FLSLLHACS--------HVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKE 512

Query: 199 AFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           A     ++  + D   W +L+  C  S +G+  + ++ + +    +PD     I++
Sbjct: 513 AKSFIDSLPLKPDCKIWQALLGAC--SFHGDTEVGEYAAEQLFETAPDSSAAHILM 566


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 287/551 (52%), Gaps = 11/551 (1%)

Query: 93   KSDNLDTALKVFDEIPEPD--VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
            K  ++  A  VF E+P P   +V+WN M+  YA    S  A     +M   GV P   +F
Sbjct: 485  KCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSF 544

Query: 151  SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
            + +LS+   +   + +   ++ SG    +  L  +LI M+G+   L  A  VF  M+  D
Sbjct: 545  TSVLSSCYCSQEAQVLRMCILESGYR--SACLETALISMHGRCRELEQARSVFDEMDHGD 602

Query: 211  IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            ++SW +++S    +   +     F  M+  G  PD++T++  ++ C     L  GK + A
Sbjct: 603  VVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHA 662

Query: 271  LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
               ++G  ++  V +A ++++S C    +++  FE +   D    N+M + Y + G  + 
Sbjct: 663  CVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 331  ALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            A+ LF+ M  E ++P + T S  L+ S     V  G  FH +A +SG DS+  VA+ L++
Sbjct: 723  AVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVK 782

Query: 390  MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            +YAK G +D +  +F    +  +V  N I+  L Q+G + E + +F ++ +EG+ PD  T
Sbjct: 783  LYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 450  LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
            L +++ AC + G V++G   F  MKE +G+ P  EHYAC +DLL +AGQL  A  I   M
Sbjct: 843  LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902

Query: 510  PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW-EAI 568
            PF+    +W S+L    + GD +L E  A+R+++L   +   + +L+  Y   G+W +A 
Sbjct: 903  PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962

Query: 569  VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            V  KK++ +N +    G SW+ I  +++ F AG+  H    +IY+VL  L   M   G  
Sbjct: 963  VDRKKLLDQN-VKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAG-- 1019

Query: 629  YLECDK-LDVE 638
              E DK LD E
Sbjct: 1020 -YEADKGLDAE 1029



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 225/475 (47%), Gaps = 52/475 (10%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A L   + L+  C+        K  H  +   G   H +LGN  +++Y R G+       
Sbjct: 23  ADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGS------- 75

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
                                   L+ A  +F ++ E +VVSW ++IS  A  G    A 
Sbjct: 76  ------------------------LEEAHAIFSKMEERNVVSWTALISANAQSGAFARAF 111

Query: 133 EMFSKMQLQ-GVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGL---SLSNVVLGNS 185
            +F  M L+    P+ +T   +L+  +++     G+ IH  +   GL   S +  ++GN+
Sbjct: 112 ALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNA 171

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF--NSGYGELALDQFYSMRYSGYS 243
           +I+MY K G    A  VFL + E D++SW ++ +G +     +   AL  F  M     +
Sbjct: 172 MINMYAKCGSPEDAIAVFLTIPEKDVVSWTAM-AGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+  T    + ACT LR+   G  + +L  + G   + +  +A I+++ KC   E +  +
Sbjct: 231 PNVITFITALGACTSLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGV 287

Query: 304 FEQL---DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
           F+ +      D    N MIS     G    A+ +F+ +  E +RP   TL  +L+++   
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS 347

Query: 361 PVEHGS--QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNT 417
            V+ G+  +FH    +SG+  + VV ++++ MYAK G   ++  +F ++  K D++SWNT
Sbjct: 348 GVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNT 407

Query: 418 IMMGLTQNGRA-AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            M+G +++ ++  + ++ F  +L  G+ P++++  A+L AC+    +D G  + S
Sbjct: 408 -MLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS 461



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 223/464 (48%), Gaps = 21/464 (4%)

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
            K      E D+VSWN+MIS     G    A+ +F +++L+G+RP+  T   +L+ ++++
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS 347

Query: 161 ----CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWN 215
                  ++ HG +  SG  L +VV+GN++I MY K G    A+ VF  +  + D+ISWN
Sbjct: 348 GVDFGAARKFHGRIWESGY-LRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWN 406

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA--LSV 273
           +++    +       ++ F+ M  +G  P++ +   ++NAC+    LD G+++ +  L+ 
Sbjct: 407 TMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTR 466

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI--NVMISTYGRYGFGEVA 331
           +  ++ +S+  +  + ++ KC  + ++  +F+++     +++  NVM+  Y +    + A
Sbjct: 467 RRDYVESSVA-TMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEA 525

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAI-KSGFDSNAVVASSLMEM 390
                 ML+  + P   + + VLSS         +Q   M I +SG+ S A + ++L+ M
Sbjct: 526 FGALMEMLQGGVLPDALSFTSVLSSC---YCSQEAQVLRMCILESGYRS-ACLETALISM 581

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           + +   ++ +  +F ++D  D+VSW  ++    +N    E   +F  +  EG+ PD+ TL
Sbjct: 582 HGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTL 641

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           A  L  C     +  G ++ + +  E G+         ++++    G   +A+    TM 
Sbjct: 642 ATTLDTCLDSTTLGLGKIIHACVT-EIGLEADIAVENALLNMYSNCGDWREALSFFETMK 700

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
            +   S W  +   SA Y    L +        +QL    P  L
Sbjct: 701 ARDLVS-WNIM---SAAYAQAGLAKEAVLLFRHMQLEGVKPDKL 740



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 12/372 (3%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK+ H  +  +GL   ++ LGN LI+MY + G L  A  +F  MEE +++SW +LIS   
Sbjct: 44  GKRAHELIANAGLE-QHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANA 102

Query: 223 NSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF---- 277
            SG    A   F +M   S  +P+ YT+  ++NAC   R+L  G+ + A+  ++G     
Sbjct: 103 QSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERES 162

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR-YGFGEVALELFQ 336
            + ++V +A I++++KC   ED++ +F  +   D      M   Y +   F   AL +F+
Sbjct: 163 TTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFR 222

Query: 337 LMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            ML + + P   T    L +     +  G+  HS+  ++G   + +  ++L+ MY K G 
Sbjct: 223 EMLLQPLAPNVITFITALGA--CTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGD 280

Query: 397 IDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            + +  +F  +  R   DLVSWN ++    + GR  + + +F  L  EG+ P+ +TL  +
Sbjct: 281 WEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITI 340

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L A    G        F     E G +        II +  + G    A  +   + ++ 
Sbjct: 341 LNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKC 400

Query: 514 GCSIWESILRAS 525
               W ++L AS
Sbjct: 401 DVISWNTMLGAS 412



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 192/453 (42%), Gaps = 63/453 (13%)

Query: 22   IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
            +D CL   +    K IH  + ++G  A   + N  L++YS  G   + L  F+ +  ++ 
Sbjct: 645  LDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 82   ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
            +SWNI                               M + YA  G +  A+ +F  MQL+
Sbjct: 705  VSWNI-------------------------------MSAAYAQAGLAKEAVLLFRHMQLE 733

Query: 142  GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            GV+P   TFS  L+    +     GK  HG    SGL  S+V +   L+ +Y K G L  
Sbjct: 734  GVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLD-SDVSVATGLVKLYAKCGKLDE 792

Query: 199  AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            A  +F    +  ++  N++I      G+ E A+  F+ M+  G  PD  T+  +I+AC  
Sbjct: 793  AISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGH 852

Query: 259  LRNLDKGKQVFALSVKVGF-LSNSIVLSAT-IDLFSKCNRLEDSVRLFEQLDRWDYAVI- 315
               +++G   F L++K  F +S ++   A  +DL  +  +LE + ++  ++   D  ++ 
Sbjct: 853  AGMVEEGCSSF-LTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVW 911

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375
              ++ T    G  E+     Q +L  D  P       VLS+I     +       +  K 
Sbjct: 912  TSLLGTCKLQGDAELGERCAQRILELD--PHNSAAHVVLSNIYCATGKWKDA--DVDRKK 967

Query: 376  GFDSNAV---------VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
              D N           +   + E  A   S   + EI+V LDK +L+        + + G
Sbjct: 968  LLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELL--------MRRAG 1019

Query: 427  RAAET-LDVFEELLEE--GLPPDRITLAAVLLA 456
              A+  LD  +EL E+  G   +RI +A  L+A
Sbjct: 1020 YEADKGLDAEDELKEKALGYHSERIAIAFGLIA 1052


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/565 (29%), Positives = 289/565 (51%), Gaps = 67/565 (11%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +  K IH    +LGF    +L N  L++Y+                              
Sbjct: 266 ELGKQIHCLALRLGFGGDLHLNNSLLEIYA------------------------------ 295

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
            K+ +++ A  +F E+PE +VVSWN MI G+     SD ++E  ++M+  G +P+  T  
Sbjct: 296 -KNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCI 354

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            +L             G+  RSG    +V  G                  +F ++ +  +
Sbjct: 355 SVL-------------GACFRSG----DVETGRR----------------IFSSIPQPSV 381

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            +WN+++SG  N  + E A+  F  M++    PD+ T+S+++++C +LR L+ GKQ+  +
Sbjct: 382 SAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGV 441

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ-LDRWDYAVINVMISTYGRYGFGEV 330
            ++     NS ++S  I ++S+C ++E S  +F+  ++  D A  N MIS +        
Sbjct: 442 VIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTK 501

Query: 331 ALELFQLMLREDIR-PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           AL LF+ M +  +  P E + + VLSS   +  + HG QFH + +KSG+ S++ V ++L 
Sbjct: 502 ALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALT 561

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G IDS+ + F  + +++ V WN ++ G   NGR  E + ++ +++  G  PD I
Sbjct: 562 DMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGI 621

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +VL AC++ G V+ G+ + S+M+  +G+ P  +HY CI+D L +AG+L  A  +   
Sbjct: 622 TFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEA 681

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
            P++    +WE +L +  ++GDV L   VAE++M L   S   Y LL+  Y+   +W+  
Sbjct: 682 TPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDS 741

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKN 593
             ++ +M KN ++K  G SW    N
Sbjct: 742 AALQGLMNKNRVHKTPGQSWTTYGN 766



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 212/446 (47%), Gaps = 48/446 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K IHG + ++G  + TYL NR LDLY   G  D   ++FDE+  ++  SWN  L    K
Sbjct: 25  GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
             +L  A +VFD +PE DVVSWN+MIS     G+ + AL ++ +M   G  PS FT + +
Sbjct: 85  VGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASV 144

Query: 154 LSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-VLYYAFGVFLNMEEL 209
           LS  S       G + HG  +++GL   N+ +GN+L+ MY K G ++ Y   VF ++ + 
Sbjct: 145 LSACSKVLDGVFGMRCHGVAVKTGLD-KNIFVGNALLSMYAKCGFIVDYGVRVFESLSQP 203

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN------ACTKLRNL- 262
           + +S+ ++I G         A+  F  M   G   D   +S +++       C  L  + 
Sbjct: 204 NEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIY 263

Query: 263 --DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
             + GKQ+  L++++GF  +  + ++ +++++K   +  +  +F ++   +    N+MI 
Sbjct: 264 GNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIV 323

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN 380
            +G+    + ++E    M     +P E T   VL          G+ F            
Sbjct: 324 GFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVL----------GACF------------ 361

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
                       ++G +++   IF  + +  + +WN ++ G +      E +  F ++  
Sbjct: 362 ------------RSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQF 409

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKG 466
           + L PD+ TL+ +L +C    F++ G
Sbjct: 410 QNLKPDKTTLSVILSSCARLRFLEGG 435



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 178/355 (50%), Gaps = 43/355 (12%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMY-------------------------------G 191
           GK IHG ++R G+  S+  L N L+D+Y                                
Sbjct: 25  GKVIHGFIVRMGMK-SDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRC 83

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K+G L  A  VF  M E D++SWN++IS     G+ E AL  +  M   G+ P  +T++ 
Sbjct: 84  KVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLAS 143

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED-SVRLFEQLDRW 310
           V++AC+K+ +   G +   ++VK G   N  V +A + +++KC  + D  VR+FE L + 
Sbjct: 144 VLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQP 203

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIP---------IP 360
           +      +I    R      A+++F+LM  + ++     LS +LS S P         I 
Sbjct: 204 NEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIY 263

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
             E G Q H +A++ GF  +  + +SL+E+YAK   ++ +  IF ++ + ++VSWN +++
Sbjct: 264 GNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIV 323

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
           G  Q  R+ ++++    + + G  P+ +T  +VL AC   G V+ G  +FS++ +
Sbjct: 324 GFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQ 378



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 152/331 (45%), Gaps = 39/331 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +  +  K IHG + +   + ++++ +  + +YS                 
Sbjct: 420 SVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYS----------------- 462

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDE-IPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                         + + ++ +  +FD+ I E D+  WNSMISG+        AL +F +
Sbjct: 463 --------------ECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRR 508

Query: 138 MQLQGVR-PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           M    V  P+  +F+ +LS+ S  C   HG+Q HG +++SG  +S+  +  +L DMY K 
Sbjct: 509 MHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGY-VSDSFVETALTDMYCKC 567

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A   F  +   + + WN +I G  ++G G+ A+  +  M  SG  PD  T   V+
Sbjct: 568 GEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVL 627

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
            AC+    ++ G ++ +   ++  +   +      +D   +  RLED+ +L E       
Sbjct: 628 TACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSS 687

Query: 313 AVI-NVMISTYGRYGFGEVALELFQLMLRED 342
           +V+  +++S+   +G   +A  + + ++R D
Sbjct: 688 SVLWEILLSSCRVHGDVSLARRVAEKLMRLD 718



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS CS+L        S    +  HG + K G+ + +++     D+Y + G  D   Q FD
Sbjct: 526 LSSCSRLC-------SLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFD 578

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDY 130
            + +KN + WN  + G   +   D A+ ++ ++     +PD +++ S+++  +  G  + 
Sbjct: 579 AVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVET 638

Query: 131 ALEMFSKMQ-LQGVRP 145
            LE+ S MQ + G+ P
Sbjct: 639 GLEILSSMQRIHGIEP 654


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 181/639 (28%), Positives = 320/639 (50%), Gaps = 65/639 (10%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K IHG  F+ G +  T+  N  + +Y++ G  DD   L                    
Sbjct: 134 LGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSL-------------------- 172

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                   L +F++    D+V+WNSMIS ++       AL     M L+GV+P G TF+ 
Sbjct: 173 --------LVLFED---RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFAS 221

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L   S       GK+IH   +R+   + N  +G++L+DMY   G +     VF ++ + 
Sbjct: 222 VLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDR 281

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQV 268
            I  WN++I+G   S + E AL  F  M  + G   +  T+S ++ A  +   + + + +
Sbjct: 282 KIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGI 341

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K G  +N  + +A ID++S+   ++ S R+F+ ++  D    N +I++Y   G  
Sbjct: 342 HGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRS 401

Query: 329 EVALELFQLMLRED----------------IRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
             AL L   M R +                 +P   TL  VL     +  +  G + H+ 
Sbjct: 402 SDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAY 461

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AI++   S   V S+L++MYAK G ++ +  +F ++  R++++WN I+M    +G+  E+
Sbjct: 462 AIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKES 521

Query: 432 LDVFEELLEEG-----LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
           L++FE+++ EG     + P  +T  A+  +C++ G VD+G+ +F  MK E+G+ P  +HY
Sbjct: 522 LELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHY 581

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQ-PGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545
           ACI+DL+ +AG++ +A  + +TMP        W S+L A  IY ++++ E  AE ++ LQ
Sbjct: 582 ACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQ 641

Query: 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                 Y LL+  Y+  G W+  + +++ M+  G+ K  GCSWI   + ++ F AG+L H
Sbjct: 642 PDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSH 701

Query: 606 HGGQKIYLVLRLLTWEMEDEG------CVYLECDKLDVE 638
              +K++  L  L+  ++ EG      CV  + D+ + E
Sbjct: 702 PQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKE 740



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 152/548 (27%), Positives = 252/548 (45%), Gaps = 84/548 (15%)

Query: 33  FAKTIHGHLFKLGFNAHT--YLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
             K IH H+FK G+ + +   + N  +++Y + G                          
Sbjct: 28  LGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCG-------------------------- 61

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY--ALEMFSKMQLQGVRPSGF 148
                 L  A KVFD I E D VSWNS+IS  A C + ++  A++ F  M ++G  PS F
Sbjct: 62  -----GLGDAYKVFDRITERDQVSWNSIIS--ALCRFEEWEVAIKAFRLMLMEGFEPSSF 114

Query: 149 TFSILLSTVSSACH----------GKQIHGSMIRSG--LSLSNVVLGNSLIDMYGKLGVL 196
           T    L +++ AC           GKQIHG   R G   + SN    N+L+ MY KLG L
Sbjct: 115 T----LVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN----NALMAMYAKLGRL 166

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  + +  E+ D+++WNS+IS    +     AL     M   G  PD  T + V+ AC
Sbjct: 167 DDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPAC 226

Query: 257 TKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           + L  L  GK++ A +++    + NS V SA +D++  C ++E    +F+ +      + 
Sbjct: 227 SHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLW 286

Query: 316 NVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAI 373
           N MI+ Y +    E AL LF ++     +     T+S ++ + +    +      H   I
Sbjct: 287 NAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVI 346

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K G ++N  + ++L++MY++ G I +S  IF  ++ RD+VSWNTI+      GR+++ L 
Sbjct: 347 KRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALL 406

Query: 434 VFEELL--------------EEGLP--PDRITLAAVLLACNYGGFVDKGMLVFS-AMKEE 476
           +  E+               E+ +P  P+ ITL  VL  C     + KG  + + A++  
Sbjct: 407 LLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL 466

Query: 477 YG--VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
               V  G    + ++D+  + G L  A  +   MP +     W  I+ A  ++G  K +
Sbjct: 467 LASQVTVG----SALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGKGKES 521

Query: 535 ENVAERMM 542
             + E M+
Sbjct: 522 LELFEDMV 529



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 175/354 (49%), Gaps = 27/354 (7%)

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSAT-IDLFSKCNRL 297
           SG+SPD +    V+ A   ++ L  GKQ+ A   K G+ S +S+ +  T ++++ KC  L
Sbjct: 4   SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSS 356
            D+ ++F+++   D    N +IS   R+   EVA++ F+LML E   P+ FTL S  L+ 
Sbjct: 64  GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC 123

Query: 357 IPIPPVEH---GSQFHSMAIKSG----FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
             +   +    G Q H    + G    F +NA     LM MYAK G +D +  + V  + 
Sbjct: 124 SNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNA-----LMAMYAKLGRLDDAKSLLVLFED 178

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           RDLV+WN+++   +QN R  E L     ++ EG+ PD +T A+VL AC++   +  G  +
Sbjct: 179 RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEI 238

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQL--GKAIDITSTMPFQPGCSIWESILRASAI 527
            +       V+      + ++D+ C  GQ+  G+ +   S +  + G  +W +++   A 
Sbjct: 239 HAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLV-FDSVLDRKIG--LWNAMI---AG 292

Query: 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           Y   +  E      ++++  +     L + A  M     A VR + + RK GI+
Sbjct: 293 YAQSEHDEKALMLFIEMEAAA----GLYSNATTMSSIVPAYVRCEGISRKEGIH 342



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 11/325 (3%)

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLY 197
           G  P  F F  +L  V+       GKQIH  + + G  S S+V + N+L++MYGK G L 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ VF  + E D +SWNS+IS        E+A+  F  M   G+ P  +T+  +  AC+
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 258 KLRNLDK---GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            LR  D    GKQ+     + G    +   +A + +++K  RL+D+  L    +  D   
Sbjct: 125 NLRKRDGLWLGKQIHGCCFRKGHW-RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAI 373
            N MIS++ +      AL   +LM+ E ++P   T + VL +   +  +  G + H+ A+
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243

Query: 374 KS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           ++     N+ V S+L++MY   G ++S   +F  +  R +  WN ++ G  Q+    + L
Sbjct: 244 RTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKAL 303

Query: 433 DVFEEL-LEEGLPPDRITLAAVLLA 456
            +F E+    GL  +  T+++++ A
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPA 328



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 189/411 (45%), Gaps = 62/411 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           + ++  C         K IH +  +      ++++G+  +D+Y   G  +    +FD + 
Sbjct: 220 ASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVL 279

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
            +    WN                               +MI+GYA   + + AL +F +
Sbjct: 280 DRKIGLWN-------------------------------AMIAGYAQSEHDEKALMLFIE 308

Query: 138 MQ-LQGVRPSGFTFSILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           M+   G+  +  T S ++      C G    + IHG +I+ GL  +N  L N+LIDMY +
Sbjct: 309 MEAAAGLYSNATTMSSIVPAYVR-CEGISRKEGIHGYVIKRGLE-TNRYLQNALIDMYSR 366

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR-------YSG---- 241
           +G +  +  +F +ME+ DI+SWN++I+     G    AL   + M+       Y G    
Sbjct: 367 MGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYND 426

Query: 242 -----YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
                + P+  T+  V+  C  L  L KGK++ A +++    S   V SA +D+++KC  
Sbjct: 427 EKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGC 486

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE-----DIRPTEFTLS 351
           L  + R+F+Q+   +    NV+I  YG +G G+ +LELF+ M+ E     +++PTE T  
Sbjct: 487 LNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFI 546

Query: 352 CVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            + +S      V+ G S FH M  + G +      + ++++  + G ++ +
Sbjct: 547 ALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEA 597



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 60/235 (25%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  +    K IH +  +    +   +G+  +D+Y++ G  +   ++FD++P +N I+W
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITW 505

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-- 142
           N+                               +I  Y   G    +LE+F  M  +G  
Sbjct: 506 NV-------------------------------IIMAYGMHGKGKESLELFEDMVAEGAK 534

Query: 143 ---VRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS-----------LID 188
              V+P+  TF  L ++ S        H  M+  GLSL + +               ++D
Sbjct: 535 GGEVKPTEVTFIALFASCS--------HSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVD 586

Query: 189 MYGKLGVLYYAFGVFLNMEE-LDII-SWNSLISGC---FNSGYGELALDQFYSMR 238
           + G+ G +  A+G+   M    D + +W+SL+  C    N   GE+A +    ++
Sbjct: 587 LVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQ 641


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 176/601 (29%), Positives = 299/601 (49%), Gaps = 51/601 (8%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG   K G N+ + + N  L +Y +F    D                            
Sbjct: 229 LHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTD---------------------------- 260

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              A +VFDE+   D V++N+MI GY      + +++MF +  L   +P   T    +++
Sbjct: 261 ---ARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDILT----VTS 312

Query: 157 VSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           V  AC         K I+  M+R+G  L + V  N LID+Y K G +  A  VF +ME  
Sbjct: 313 VLCACGHLRDLSLAKYIYNYMLRAGFVLESTV-KNILIDVYAKCGDMITARDVFNSMECK 371

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +SWNS+ISG   SG    A+  F  M       D  T  ++I+  T+L +L  GK + 
Sbjct: 372 DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLH 431

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           +  +K G   +  V +A ID+++KC  + DS+++F  +   D    N +IS   R+G   
Sbjct: 432 SNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFA 491

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP----IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
             L++   M +  + P    ++  L ++P    +     G + H   ++ G++S   + +
Sbjct: 492 TGLQVTTQMRKNKVVPD---MATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGN 548

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+EMY+K G ++SS  +F ++ +RD+V+W  ++      G   + L+ F ++ + G+ P
Sbjct: 549 ALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVP 608

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           D +   A++ AC++ G V+KG+  F  MK  Y + P  EHYAC++DLL ++ ++ KA + 
Sbjct: 609 DSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEF 668

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP +P  SIW S+LRA    GD++  E V+ R+++L    P    L + AYA   +W
Sbjct: 669 IQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKW 728

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           + +  ++K +R   I K  G SWI I  +++ F +G+      + I+  L +L   M  E
Sbjct: 729 DKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKE 788

Query: 626 G 626
           G
Sbjct: 789 G 789



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/555 (25%), Positives = 261/555 (47%), Gaps = 43/555 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L+++ V+    ++ S +I  C      +    ++  + ++GF +  Y+GN  +D+YSR G
Sbjct: 97  LRESKVSPDKYTFPS-VIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMG 155

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                           L  A +VFDE+P  D+VSWNS+ISGY+S
Sbjct: 156 L-------------------------------LSRARQVFDEMPVRDLVSWNSLISGYSS 184

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVV 181
            GY + ALE++ +++   + P  FT S +L   ++      G+ +HG  ++SG++  +VV
Sbjct: 185 HGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVV 244

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             N L+ MY K      A  VF  M   D +++N++I G       E ++  F       
Sbjct: 245 -NNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQ 302

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           + PD  T++ V+ AC  LR+L   K ++   ++ GF+  S V +  ID+++KC  +  + 
Sbjct: 303 FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITAR 362

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIP 360
            +F  ++  D    N +IS Y + G    A++LF++M+  + +    T   ++S S  + 
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLA 422

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            ++ G   HS  IKSG   +  V+++L++MYAK G +  S +IF  +   D V+WNT++ 
Sbjct: 423 DLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVIS 482

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
              + G  A  L V  ++ +  + PD  T    L  C        G  +   +   +G  
Sbjct: 483 ACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLL-RFGYE 541

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
              +    +I++  + G L  +  +   M  +     W  ++ A  +YG+    E   E 
Sbjct: 542 SELQIGNALIEMYSKCGCLESSFRVFERMS-RRDVVTWTGMIYAYGMYGE---GEKALES 597

Query: 541 MMDLQLPSPLPYSLL 555
            +D++    +P S++
Sbjct: 598 FVDMEKSGIVPDSVV 612



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 136/550 (24%), Positives = 258/550 (46%), Gaps = 53/550 (9%)

Query: 19  SQLIDRCLSFKS-FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           S  I R LS  S  +  + IH  +  LG +   +   + +D YS F      L +F  + 
Sbjct: 7   SAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVS 66

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                                         P  +V  WNS+I  ++  G+   ALE + K
Sbjct: 67  ------------------------------PAKNVYIWNSIIRAFSKNGWFPKALEFYGK 96

Query: 138 MQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           ++   V P  +TF  ++   +    A  G  ++  ++  G   S++ +GN+L+DMY ++G
Sbjct: 97  LRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFE-SDLYVGNALVDMYSRMG 155

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           +L  A  VF  M   D++SWNSLISG  + GY E AL+ ++ +R S   PD +T+S V+ 
Sbjct: 156 LLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLP 215

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A   L  + +G+ +   ++K G  S S+V +  + ++ K +R  D+ R+F+++   D   
Sbjct: 216 AFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVT 275

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAI 373
            N MI  Y +    E ++++F   L +  +P   T++ VL +   +  +      ++  +
Sbjct: 276 YNTMICGYLKLEMVEESVKMFLENL-DQFKPDILTVTSVLCACGHLRDLSLAKYIYNYML 334

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           ++GF   + V + L+++YAK G + ++ ++F  ++ +D VSWN+I+ G  Q+G   E + 
Sbjct: 335 RAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMK 394

Query: 434 VFEELLEEGLPPDRIT------LAAVLLACNYG-GFVDKGMLVFSAMKEEYGVMPGEEHY 486
           +F+ ++      D IT      L+  L    +G G    G+        + G+       
Sbjct: 395 LFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGI--------KSGIYIDLSVS 446

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
             +ID+  + G++G ++ I ++M      + W +++ A   +GD      V  +M   ++
Sbjct: 447 NALIDMYAKCGEVGDSLKIFNSMGTLDTVT-WNTVISACVRFGDFATGLQVTTQMRKNKV 505

Query: 547 PSPLPYSLLT 556
              +   L+T
Sbjct: 506 VPDMATFLVT 515



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 189/429 (44%), Gaps = 42/429 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +    AK I+ ++ + GF   + + N  +D+Y++ G       +F+ +  K+ +SW
Sbjct: 317 CGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSW 376

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G ++S +L  A+K+F                            +M   M+ Q   
Sbjct: 377 NSIISGYIQSGDLMEAMKLF----------------------------KMMMIMEEQADH 408

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            +      L + ++    GK +H + I+SG+ + ++ + N+LIDMY K G +  +  +F 
Sbjct: 409 ITYLMLISLSTRLADLKFGKGLHSNGIKSGIYI-DLSVSNALIDMYAKCGEVGDSLKIFN 467

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           +M  LD ++WN++IS C   G     L     MR +   PD  T  + +  C  L     
Sbjct: 468 SMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRL 527

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK++    ++ G+ S   + +A I+++SKC  LE S R+FE++ R D      MI  YG 
Sbjct: 528 GKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGM 587

Query: 325 YGFGEVALELFQLMLREDIRPTEFTL-----SCVLSSIPIPPVEHG-SQFHSMAIKSGFD 378
           YG GE ALE F  M +  I P          +C  S +    VE G + F  M      D
Sbjct: 588 YGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGL----VEKGLACFEKMKTHYKID 643

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
                 + ++++ +++  I  + E    +  + D   W +++     +G       V   
Sbjct: 644 PMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRR 703

Query: 438 LLEEGLPPD 446
           ++E  L PD
Sbjct: 704 IIE--LNPD 710


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 261/448 (58%), Gaps = 6/448 (1%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L N LI+MY K G+L+ A  VF  M + +++SW ++IS    +   + AL+    M   G
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             P+ +T S V+ AC  L NL   +Q+    +K+G  S+  V SA ID++S+   LE+++
Sbjct: 62  VRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENAL 118

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           R+F+++   D  V + +I+ + +   G+ AL LF+ M R      + TL+ VL +   + 
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G Q H   +K  +D + ++ ++L++MY K GS++ +  +FV++ ++D++SW+T++ 
Sbjct: 179 LLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIA 236

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           GL QNG + E L +FE +   G+ P+ +T+  VL AC++ G V++G+  F +MKE +G+ 
Sbjct: 237 GLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGID 296

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           PG EHY C+IDLL +AG+L +A+D+ + M  +P    W ++L A  ++ +V +  + A++
Sbjct: 297 PGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQ 356

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNA 600
           ++ L       Y LL+  YA   RW  +  V++ M   GI K  GCSWI +  +I+ F  
Sbjct: 357 ILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFIL 416

Query: 601 GELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           G+  H   ++I + L  L +++   G V
Sbjct: 417 GDRSHPQIREINIQLNQLIYKLMGVGYV 444



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 184/338 (54%), Gaps = 6/338 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           NI +   +K   L  A  VFD++P+ +VVSW +MIS Y++   +D ALE    M  +GVR
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           P+ FT+S +L       + +Q+H  +I+ GL  S+V + ++LID+Y + G L  A  VF 
Sbjct: 64  PNMFTYSSVLRACDGLFNLRQLHCCIIKIGLD-SDVFVRSALIDVYSRWGELENALRVFD 122

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            M   D++ W+S+I+G   +  G+ AL  F  M+ +G+   + T++ V+ ACT L  L+ 
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+QV    +K  +  + I+ +A +D++ KC  LED+  +F ++   D    + MI+   +
Sbjct: 183 GRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAV 382
            G+ + AL+LF+ M    I+P   T+  VL +      VE G   FHSM    G D    
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
               ++++  + G +  + ++  +++ + D V+W  ++
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALL 338


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 179/616 (29%), Positives = 306/616 (49%), Gaps = 41/616 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNA-HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L++  +S       +TIH H+ +       ++L N  +++YS+                 
Sbjct: 12  LLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKL---------------- 55

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                          D L++A  V        VV+W S+ISG         AL  F+ M+
Sbjct: 56  ---------------DLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMR 100

Query: 140 LQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              V+P+ FTF  +      V     GKQIHG  ++ G+ + +V +G S  DMY K G  
Sbjct: 101 RDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGM-IYDVFVGCSCFDMYCKTGFR 159

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  M + ++ +WN+ IS          A+  F         P+  T    +NAC
Sbjct: 160 GDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNAC 219

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVI 315
             +  L+ G+Q+ A  V+ G+  +  V +  ID + KC  +  +  +F ++ +R +    
Sbjct: 220 VDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSW 279

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             M++   +    E A  +F L  R+++ PT+F +S VLS+   +  +E G   H++A+K
Sbjct: 280 CSMLAALVQNHEEERACMVF-LQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVK 338

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +  + N  V S+L++MY K GSI+++ ++F +L +R+LV+WN ++ G    G     L +
Sbjct: 339 ACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRL 398

Query: 435 FEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           FEE+     G+ P  +TL ++L  C+  G V++G+ +F +M+  YG+ PG EH+AC++DL
Sbjct: 399 FEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDL 458

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L ++G + +A +    M  QP  S+W ++L A  ++G  +L +  AE++ +L       +
Sbjct: 459 LGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNH 518

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            +L+   A  GRWE    V+K M+  GI K  G SWI +KNRI+ F A +  H    +I 
Sbjct: 519 VVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQ 578

Query: 613 LVLRLLTWEMEDEGCV 628
            +L  L   M++ G V
Sbjct: 579 AMLGKLRGGMKEAGYV 594



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 195/406 (48%), Gaps = 13/406 (3%)

Query: 143 VRPSGFTFSILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           + P     S+L S VS+ C   G+ IH  +IR+ ++     L N L++MY KL +L  A 
Sbjct: 3   IHPQNLLGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQ 62

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            V        +++W SLISGC ++     AL  F +MR     P+++T   V  A   ++
Sbjct: 63  HVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQ 122

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
               GKQ+  L++K G + +  V  +  D++ K     D+  +F+++ + + A  N  IS
Sbjct: 123 IPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYIS 182

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDS 379
              +      A+  F+  L     P   T    L++ + +  +  G Q H+  ++ G+  
Sbjct: 183 NAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKE 242

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           +  VA+ L++ Y K G I S+  +F ++ +++++VSW +++  L QN        VF + 
Sbjct: 243 DVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQA 302

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKE--EYGVMPGEEHYACIIDLLCQ 495
            +E  P D   +++VL AC   G ++ G  V + A+K   E  +  G    + ++D+  +
Sbjct: 303 RKEVEPTD-FMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVG----SALVDMYGK 357

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
            G +  A  + S +P +     W +++   A  GD+ +   + E M
Sbjct: 358 CGSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMALRLFEEM 402



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 155/345 (44%), Gaps = 54/345 (15%)

Query: 9   HVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDD 68
           H    S+++C+  ++ C+     +  + +H  + + G+     + N  +D Y + G    
Sbjct: 204 HGEPNSITFCA-FLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVS 262

Query: 69  VLQLFDEI-PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
              +F+ I  +KN +SW   L  L+++   + A  VF +  +                  
Sbjct: 263 AEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE----------------- 305

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNV 180
                          V P+ F    ++S+V SAC        G+ +H   +++ +   N+
Sbjct: 306 ---------------VEPTDF----MISSVLSACAELGGLELGRSVHALAVKACVE-DNI 345

Query: 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240
            +G++L+DMYGK G +  A  VF  + E ++++WN++I G  + G  ++AL  F  M   
Sbjct: 346 FVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLG 405

Query: 241 --GYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRL 297
             G  P   T+  +++ C+++  +++G Q+F ++ +  G    +   +  +DL  +   +
Sbjct: 406 SHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLV 465

Query: 298 EDSVRLFEQLD-RWDYAVINVMIST---YGRYGFGEVALE-LFQL 337
           + +    + +  +   +V   ++     +G+   G++A E LF+L
Sbjct: 466 DRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFEL 510


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 167/612 (27%), Positives = 311/612 (50%), Gaps = 76/612 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IH  +F  G ++   L N  + +Y+RFG+  D  ++F  +  +               
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR--------------- 171

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                           D  SWN++I  ++  G    AL +F +M+   ++P+  T+  ++
Sbjct: 172 ----------------DETSWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVI 214

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  S+      G++IH  ++ +G   S++V+  +LI+MYGK G  + A  VF  M++ D+
Sbjct: 215 SGFSTPEVLPEGRKIHAEIVANGFD-SDLVVATALINMYGKCGSSHEAREVFDKMKKRDM 273

Query: 212 ISWNSLISGCF--NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +SWN +I GC+  N  + E AL+ +  +   G+   + T   ++ AC+ ++ L +G+ V 
Sbjct: 274 VSWNVMI-GCYVQNGDFHE-ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVH 331

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF------------------------- 304
           +  ++ G  S   V +A +++++KC  LE++ ++F                         
Sbjct: 332 SHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGK 391

Query: 305 ---------EQLDRWDYAVINVMISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVL 354
                    ++L   D    N MI+TY + G    A+++F+ M     ++P   T   VL
Sbjct: 392 DARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVL 451

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +   +  +      H+   +S  +SN VV ++L+ MYA+ GS++ +  +F    ++ +V
Sbjct: 452 EACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVV 511

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SW  ++   +Q GR AE LD+F+E+  EG+ PD +T  ++L  C +GG +++G   F+ M
Sbjct: 512 SWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDM 571

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            E +G+ P  +H+A ++DLL ++G+L  A ++  +MPF+P    W + L A  I+G ++L
Sbjct: 572 AELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLEL 631

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E  AER+ +L   S  PY  ++  YA  G WE +  V+K M + G+ K+ G S+I +  
Sbjct: 632 GEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG 691

Query: 594 RIYTFNAGELQH 605
           +++ F++G   H
Sbjct: 692 KLHEFSSGGKYH 703



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 208/415 (50%), Gaps = 12/415 (2%)

Query: 93  KSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           K D+L  A  VF+ +   + +VVSWN+MI+ YA  G+S  AL ++ +M LQG+     TF
Sbjct: 54  KCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTF 113

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
             +L   SS   G++IH  +  SGL  S   L N+L+ MY + G +  A  +F +++  D
Sbjct: 114 VSVLGACSSLAQGREIHNRVFYSGLD-SFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
             SWN++I     SG    AL  F  M+     P+  T   VI+  +    L +G+++ A
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             V  GF S+ +V +A I+++ KC    ++  +F+++ + D    NVMI  Y + G    
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE 291

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ALEL+Q +  E  + T+ T   +L +   +  +  G   HS  ++ G DS   VA++L+ 
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG---RAAETLDVFEELLEEGLPPD 446
           MYAK GS++ + ++F  +  RD V+W+T++     NG    A +   VF+ L       D
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR----D 407

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
            I   A++      G     M +F  M    G+ P    +  +++     G+L +
Sbjct: 408 TICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 207/407 (50%), Gaps = 16/407 (3%)

Query: 144 RPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +P   TF  +L + SS      G+ +H   IR      + ++GN+LI MYGK   L  A 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALH-ERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 201 GVFLNME--ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            VF +M+  + +++SWN++I+    +G+   AL  ++ M   G   D  T   V+ AC+ 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS- 121

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
             +L +G+++       G  S   + +A + ++++   + D+ R+F+ L   D    N +
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGF 377
           I  + + G    AL +F+ M + D++P   T   V+S    P V   G + H+  + +GF
Sbjct: 180 ILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           DS+ VVA++L+ MY K GS   + E+F K+ KRD+VSWN ++    QNG   E L+++++
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           L  EG    + T  ++L AC+    + +G LV S + E  G+         ++++  + G
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCG 357

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYG---DVKLTENVAERM 541
            L +A  + + M  +   + W +++ A A  G   D +    V +R+
Sbjct: 358 SLEEARKVFNAMKNRDAVA-WSTLIGAYASNGYGKDARKARKVFDRL 403



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 15/326 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S K+    + +H H+ + G ++   +    +++Y++ G+ ++  ++F+ +  ++
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373

Query: 81  CISWNICLRGLLKSD----NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++W+  L G   S+    +   A KVFD +   D + WN+MI+ Y   G +  A+++F 
Sbjct: 374 AVAWST-LIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFR 432

Query: 137 KMQ-LQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +M    G++P   TF  +L   +S       K +H  +  S L  SNVV+ N+LI+MY +
Sbjct: 433 EMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELE-SNVVVTNTLINMYAR 491

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G L  A  +F   +E  ++SW ++++     G    ALD F  M   G  PD+ T + +
Sbjct: 492 CGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSI 551

Query: 253 INACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL---- 307
           +  CT   +L++G + F    ++ G    +   +A +DL  +  RL D+  L E +    
Sbjct: 552 LFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEP 611

Query: 308 DRWDYAVINVMISTYGRYGFGEVALE 333
           D   +         +G+   GE A E
Sbjct: 612 DPVAWMTFLTACRIHGKLELGEAAAE 637


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 174/620 (28%), Positives = 313/620 (50%), Gaps = 49/620 (7%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L  C  L+D           + IH  +FKLGF    ++    + +YSRFG          
Sbjct: 182 LKACQTLVD----------GRKIHCWVFKLGFQWDVFVAASLIHMYSRFG---------- 221

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                          G+ +S        +FD++P  D+ SWN+MISG    G +  AL++
Sbjct: 222 -------------FVGIARS--------LFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 260

Query: 135 FSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
             +M+L+G+     T + +L   + +        IH  +I+ GL    + + N+LI+MY 
Sbjct: 261 LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFE-LFVSNALINMYA 319

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G L  A  VF  M   D++SWNS+I+    +     A   F+ M+ +G  PD  T+  
Sbjct: 320 KFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVS 379

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRW 310
           + +   + R+    + V    ++ G+L  ++V+ +A +D+++K   ++ + ++F  +   
Sbjct: 380 LASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK 439

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
           D    N +IS Y + G    A+E++++M    +I+  + T   +L++   +  ++ G + 
Sbjct: 440 DVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRI 499

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H   IK+    +  V + L+++Y K G +  +  +F ++ +   V WN I+     +G  
Sbjct: 500 HGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHG 559

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            + L +F E+ +EG+ PD +T  ++L AC++ G VD+G   F  M +EYG+ P  +HY C
Sbjct: 560 EKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPSLKHYGC 618

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           ++DLL +AG L  A D    MP  P  SIW ++L A  I+G+++L +  ++R+ ++   +
Sbjct: 619 MVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSEN 678

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
              Y LL+  YA  G+WE + +V+ + R+ G+ K  G S I +  R+  F  G   H   
Sbjct: 679 VGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKC 738

Query: 609 QKIYLVLRLLTWEMEDEGCV 628
           ++IY  LR+LT +M+  G +
Sbjct: 739 KEIYAELRILTAKMKSLGYI 758



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 222/448 (49%), Gaps = 15/448 (3%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL-QGVRPSGFTFSILLSTVSSACH 162
           FD+I   DV +WNSMIS Y   G+   A++ F ++ L    +   +TF  +L    +   
Sbjct: 131 FDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD 190

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G++IH  + + G    +V +  SLI MY + G +  A  +F +M   D+ SWN++ISG  
Sbjct: 191 GRKIHCWVFKLGFQW-DVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G    ALD    MR  G + D  T++ ++  C +L ++     +    +K G      
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A I++++K   L D+ ++F+Q+   D    N +I+ Y +      A   F  M    
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 343 IRPTEFTLSCVLSSIPIPPVEHGS--QFHSMAIKSGFDSNAVV-ASSLMEMYAKTGSIDS 399
           + P   TL   L+SI     ++ +    H   ++ G+   AVV  +++M+MYAK G IDS
Sbjct: 370 LEPDLLTL-VSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDS 428

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLACN 458
           + ++F  +  +D+VSWNT++ G TQNG A+E ++V+  + E   +  ++ T  ++L A  
Sbjct: 429 AHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYA 488

Query: 459 YGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515
           + G + +GM +   + +      V  G     C+IDL  + G+L  A+ +   +P +   
Sbjct: 489 HVGALQQGMRIHGHLIKTNLHLDVFVG----TCLIDLYGKCGRLVDAMCLFYQVPRESSV 544

Query: 516 SIWESILRASAIYGDVKLTENVAERMMD 543
             W +I+    I+G  +    +   M D
Sbjct: 545 P-WNAIISCHGIHGHGEKALKLFREMQD 571



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 153/315 (48%), Gaps = 6/315 (1%)

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           Q  +     F+ L  + +     K++H  ++ SG   SN +    L+++Y  LG +  + 
Sbjct: 70  QPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFI-SIRLVNLYASLGDVSLSR 128

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKL 259
           G F  ++  D+ +WNS+IS    +G+   A+D FY  +  + +  D YT   V+ AC  L
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL 188

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +   G+++     K+GF  +  V ++ I ++S+   +  +  LF+ +   D    N MI
Sbjct: 189 VD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMI 245

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFD 378
           S   + G    AL++   M  E I     T++ +L     +  +   +  H   IK G +
Sbjct: 246 SGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLE 305

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
               V+++L+ MYAK G++  + ++F ++  RD+VSWN+I+    QN         F ++
Sbjct: 306 FELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKM 365

Query: 439 LEEGLPPDRITLAAV 453
              GL PD +TL ++
Sbjct: 366 QLNGLEPDLLTLVSL 380



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 138/285 (48%), Gaps = 16/285 (5%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           +E   + + ++CTK       K++ AL V  G + ++ +    ++L++    +  S   F
Sbjct: 75  EEIDFNSLFDSCTKTL---LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTF 131

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIPIPPVE 363
           +Q+ R D    N MIS Y R G    A++ F QL+L    +   +T   VL +     + 
Sbjct: 132 DQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT--LV 189

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G + H    K GF  +  VA+SL+ MY++ G +  +  +F  +  RD+ SWN ++ GL 
Sbjct: 190 DGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           QNG AA+ LDV +E+  EG+  D +T+A++L  C   G +    L+       Y +  G 
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLI-----HLYVIKHGL 304

Query: 484 EH----YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
           E        +I++  + G LG A  +   M  +   S W SI+ A
Sbjct: 305 EFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVS-WNSIIAA 348


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 165/565 (29%), Positives = 289/565 (51%), Gaps = 67/565 (11%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +  K IH    +LGF    +L N  L++Y+                              
Sbjct: 232 ELGKQIHCLALRLGFGGDLHLNNSLLEIYA------------------------------ 261

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
            K+ +++ A  +F E+PE +VVSWN MI G+     SD ++E  ++M+  G +P+  T  
Sbjct: 262 -KNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCI 320

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            +L             G+  RSG    +V  G                  +F ++ +  +
Sbjct: 321 SVL-------------GACFRSG----DVETGRR----------------IFSSIPQPSV 347

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            +WN+++SG  N  + E A+  F  M++    PD+ T+S+++++C +LR L+ GKQ+  +
Sbjct: 348 SAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGV 407

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ-LDRWDYAVINVMISTYGRYGFGEV 330
            ++     NS ++S  I ++S+C ++E S  +F+  ++  D A  N MIS +        
Sbjct: 408 VIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTK 467

Query: 331 ALELFQLMLREDIR-PTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           AL LF+ M +  +  P E + + VLSS   +  + HG QFH + +KSG+ S++ V ++L 
Sbjct: 468 ALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALT 527

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G IDS+ + F  + +++ V WN ++ G   NGR  E + ++ +++  G  PD I
Sbjct: 528 DMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGI 587

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  +VL AC++ G V+ G+ + S+M+  +G+ P  +HY CI+D L +AG+L  A  +   
Sbjct: 588 TFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEA 647

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
            P++    +WE +L +  ++GDV L   VAE++M L   S   Y LL+  Y+   +W+  
Sbjct: 648 TPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDS 707

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKN 593
             ++ +M KN ++K  G SW    N
Sbjct: 708 AALQGLMNKNRVHKTPGQSWTTYGN 732



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 206/436 (47%), Gaps = 48/436 (11%)

Query: 44  LGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKV 103
           +G  + TYL NR LDLY   G  D   ++FDE+  ++  SWN  L    K  +L  A +V
Sbjct: 1   MGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEV 60

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS---A 160
           FD +PE DVVSWN+MIS     G+ + AL ++ +M   G  PS FT + +LS  S     
Sbjct: 61  FDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDG 120

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-VLYYAFGVFLNMEELDIISWNSLIS 219
             G + HG  +++GL   N+ +GN+L+ MY K G ++ Y   VF ++ + + +S+ ++I 
Sbjct: 121 VFGMRCHGVAVKTGLD-KNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 179

Query: 220 GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN------ACTKLRNL---DKGKQVFA 270
           G         A+  F  M   G   D   +S +++       C  L  +   + GKQ+  
Sbjct: 180 GLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHC 239

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L++++GF  +  + ++ +++++K   +  +  +F ++   +    N+MI  +G+    + 
Sbjct: 240 LALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDK 299

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           ++E    M     +P E T   VL          G+ F                      
Sbjct: 300 SVEFLTRMRDSGFQPNEVTCISVL----------GACF---------------------- 327

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
             ++G +++   IF  + +  + +WN ++ G +      E +  F ++  + L PD+ TL
Sbjct: 328 --RSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTL 385

Query: 451 AAVLLACNYGGFVDKG 466
           + +L +C    F++ G
Sbjct: 386 SVILSSCARLRFLEGG 401



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQF 234
           +S+ +V   N+ +    K+G L  A  VF  M E D++SWN++IS     G+ E AL  +
Sbjct: 33  MSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVY 92

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
             M   G+ P  +T++ V++AC+K+ +   G +   ++VK G   N  V +A + +++KC
Sbjct: 93  KRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKC 152

Query: 295 NRLED-SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
             + D  VR+FE L + +      +I    R      A+++F+LM  + ++     LS +
Sbjct: 153 GFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNI 212

Query: 354 LS-SIP---------IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           LS S P         I   E G Q H +A++ GF  +  + +SL+E+YAK   ++ +  I
Sbjct: 213 LSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELI 272

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++ + ++VSWN +++G  Q  R+ ++++    + + G  P+ +T  +VL AC   G V
Sbjct: 273 FAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDV 332

Query: 464 DKGMLVFSAMKE 475
           + G  +FS++ +
Sbjct: 333 ETGRRIFSSIPQ 344



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 151/331 (45%), Gaps = 39/331 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +  +  K IHG + +   + ++++ +  + +YS                 
Sbjct: 386 SVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYS----------------- 428

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDE-IPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                         + + ++ +  +FD+ I E D+  WNSMISG+        AL +F +
Sbjct: 429 --------------ECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRR 474

Query: 138 MQLQGVR-PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           M    V  P+  +F+ +LS+ S  C   HG+Q HG +++SG  +S+  +  +L DMY K 
Sbjct: 475 MHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGY-VSDSFVETALTDMYCKC 533

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A   F  +   + + WN +I G  ++G G+ A+  +  M  SG  PD  T   V+
Sbjct: 534 GEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVL 593

Query: 254 NACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
            AC+    ++ G ++ +   ++ G           +D   +  RLED+ +L E       
Sbjct: 594 TACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSS 653

Query: 313 AVI-NVMISTYGRYGFGEVALELFQLMLRED 342
           +V+  +++S+   +G   +A  + + ++R D
Sbjct: 654 SVLWEILLSSCRVHGDVSLARRVAEKLMRLD 684



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS CS+L        S    +  HG + K G+ + +++     D+Y + G  D   Q FD
Sbjct: 492 LSSCSRLC-------SLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFD 544

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDY 130
            + +KN + WN  + G   +   D A+ ++ ++     +PD +++ S+++  +  G  + 
Sbjct: 545 AVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVET 604

Query: 131 ALEMFSKMQ-LQGVRP 145
            LE+ S MQ + G+ P
Sbjct: 605 GLEILSSMQRIHGIEP 620


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 266/470 (56%), Gaps = 7/470 (1%)

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           + ACHGK +   +        +V L N LI+ Y K G +  A  VF  M E  ++SWN++
Sbjct: 82  AKACHGKTMRMEL------QGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTM 135

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
           I     +     ALD F+ MR  G+   E+TIS V++AC    +  + K++  LS+K   
Sbjct: 136 IGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSL 195

Query: 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337
             N  V +A +DL++KC  + D+V++FE +        + M++ Y +    E AL L++ 
Sbjct: 196 DLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRR 255

Query: 338 MLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
             R  +   +FTLS V+ +   +  +  G Q H++  KSGF SN  VASS ++MYAK GS
Sbjct: 256 AQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGS 315

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +  S  IF ++ ++++  WNTI+ G  ++ R  E + +FE++ ++G+ P+ +T +++L  
Sbjct: 316 LRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSV 375

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C + G V++G   F  M+  YG+ P   HY+C++D+L +AG L +A ++  ++PF+P  S
Sbjct: 376 CGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTAS 435

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           IW S+L +  +  +++L E  A+++ +L+  +   + LL+  YA   +WE I + +K++R
Sbjct: 436 IWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLR 495

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
              + KV G SWI IK++++ F  GE  H   ++I  +L  L  E+   G
Sbjct: 496 DCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFG 545



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 174/324 (53%), Gaps = 6/324 (1%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N+ +    K   ++ A +VFD + E  +VSWN+MI  Y        AL++F +M+ +G +
Sbjct: 102 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFK 161

Query: 145 PSGFTFSILLSTVSSACHG---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            S FT S +LS   + C     K++H   +++ L L N+ +G +L+D+Y K G++  A  
Sbjct: 162 FSEFTISSVLSACGANCDALECKKLHCLSMKTSLDL-NLYVGTALLDLYAKCGMINDAVQ 220

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M++   ++W+S+++G   S   E AL  +   +      +++T+S VI AC+ L  
Sbjct: 221 VFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAA 280

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           L +GKQ+ A+  K GF SN  V S+ +D+++KC  L +S  +F ++   +  + N +IS 
Sbjct: 281 LIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISG 340

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHS-MAIKSGFDS 379
           + ++   +  + LF+ M ++ + P E T S +LS       VE G +F   M    G   
Sbjct: 341 FAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSP 400

Query: 380 NAVVASSLMEMYAKTGSIDSSTEI 403
           N V  S ++++  + G +  + E+
Sbjct: 401 NVVHYSCMVDILGRAGLLSEAYEL 424



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 129/277 (46%), Gaps = 36/277 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H    K   + + Y+G   LDLY++ G  +D +Q+F+ +  K+ ++W          
Sbjct: 184 KKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTW---------- 233

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                +SM++GY      + AL ++ + Q   +  + FT S ++
Sbjct: 234 ---------------------SSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVI 272

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S +++   GKQ+H  + +SG   SNV + +S +DMY K G L  ++ +F  ++E +I
Sbjct: 273 CACSNLAALIEGKQMHAVIRKSGFG-SNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNI 331

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
             WN++ISG       +  +  F  M+  G  P+E T S +++ C     +++G++ F L
Sbjct: 332 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL 391

Query: 272 -SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
                G   N +  S  +D+  +   L ++  L + +
Sbjct: 392 MRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 428



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 153/327 (46%), Gaps = 4/327 (1%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++  C +   + + K     ++++    +  + +  I+ +SKC  +E + ++F+ +    
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHS 370
               N MI  Y R      AL++F  M  E  + +EFT+S VLS+           + H 
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHC 188

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           +++K+  D N  V ++L+++YAK G I+ + ++F  +  +  V+W++++ G  Q+    E
Sbjct: 189 LSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEE 248

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L ++       L  ++ TL++V+ AC+    + +G  + + +++  G        +  +
Sbjct: 249 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKS-GFGSNVFVASSAV 307

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM-MDLQLPSP 549
           D+  + G L ++  I S +  +    +W +I+   A +   K    + E+M  D   P+ 
Sbjct: 308 DMYAKCGSLRESYIIFSEVQ-EKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNE 366

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           + +S L       G  E   R  K+MR
Sbjct: 367 VTFSSLLSVCGHTGLVEEGRRFFKLMR 393



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 37/217 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C +  +    K +H  + K GF ++ ++ +  +D+Y++ G+  +   +F E+ +
Sbjct: 269 SSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 328

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN   W                               N++ISG+A        + +F KM
Sbjct: 329 KNIELW-------------------------------NTIISGFAKHARPKEVMILFEKM 357

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLS-NVVLGNSLIDMYGKLG 194
           Q  G+ P+  TFS LLS          G++    ++R+   LS NVV  + ++D+ G+ G
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAG 416

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           +L  A+ +  ++  E     W SL++ C      ELA
Sbjct: 417 LLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELA 453


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 183/696 (26%), Positives = 318/696 (45%), Gaps = 110/696 (15%)

Query: 11   NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            N   L + + L+ +C        ++ IH  +   G +   +L  R + +Y+ FG   D  
Sbjct: 868  NNDVLDFFNDLLQQC---SKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQ 924

Query: 71   QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            ++F+  P +       C   LL                      WNS++    + GY + 
Sbjct: 925  RVFEVSPIE-------CFSNLLL---------------------WNSILRANVAHGYCEE 956

Query: 131  ALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
            ALE++ +M+  GV   GFTF +++   + + S    + +HG ++  G    N+ +GN L+
Sbjct: 957  ALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW-NLHVGNELM 1015

Query: 188  DMYGKLGVLYYAFGVFLNMEELDIISWNSLISG------CFNS----------------- 224
             MYGK+G +  A  VF  M     +SWN+++SG      C  +                 
Sbjct: 1016 GMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLV 1075

Query: 225  ------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
                        G     ++ F  MR  G       +++V++    L   D+GK +    
Sbjct: 1076 TWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYV 1135

Query: 273  VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF----- 327
            VK GF +   V ++ I L+ K   +  +  LF ++   +    N +IS+Y   G+     
Sbjct: 1136 VKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAF 1195

Query: 328  ----------------------------------GEVALELFQLMLREDIRPTEFTLSCV 353
                                              GE ALELF+ M    ++    T++ V
Sbjct: 1196 AIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 1255

Query: 354  LS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
            LS    +  +  G + H   ++S  D N +V + L+ MY K+GS      +F K++ +DL
Sbjct: 1256 LSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDL 1315

Query: 413  VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
            +SWNT++ G   +G     +  F++++++G  PD +T  AVL AC++ G V +G  +F  
Sbjct: 1316 ISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDK 1375

Query: 473  MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
            M +E+ V P  EHYAC++DLL +AG L +A  +  +MP +P   +W ++L +  ++ + +
Sbjct: 1376 MIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTE 1435

Query: 533  LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIK 592
            + E  A ++ +L       Y LL+  YA  GRWE   +V+   +  G+ K  G SWI +K
Sbjct: 1436 VAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVK 1495

Query: 593  NRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             ++Y F+AG  QH   +++Y +L+ L  +ME EG +
Sbjct: 1496 KKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYI 1531


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/549 (28%), Positives = 286/549 (52%), Gaps = 6/549 (1%)

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           I  N  L    K   +D+AL+VF +I E D +SWNSM+S Y    +   A++ F +M   
Sbjct: 302 IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQH 361

Query: 142 GVRPSG---FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G +P      + S  L  +S   +G++ H   I+  L  +++ +GN+L+DMY K G +  
Sbjct: 362 GFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLH-TDLQVGNTLMDMYIKCGSIEC 420

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +  VF +M   D ISW ++++    S     AL+    ++  G   D   I  ++  C  
Sbjct: 421 SAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCG 480

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L+++   KQV   +++ G L + I+ +  ID++ +C   + S+ LF+++++ D      M
Sbjct: 481 LKSISLLKQVHCYAIRNGLL-DLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSM 539

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
           I+     G    A+ LF  M + +I+P    L  +L +I  +  +  G Q H   I+  F
Sbjct: 540 INCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNF 599

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
                V SSL++MY+  GS++ +  +F +   +D+V W  ++     +G   + +D+F+ 
Sbjct: 600 PIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKR 659

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           +L+ GL PD ++  A+L AC++   V++G      M  +Y + P +EHYAC++D+L ++G
Sbjct: 660 MLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSG 719

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           Q  +A +   TMP  P  ++W ++L A  ++ +  L    A ++++L+  +P  Y L++ 
Sbjct: 720 QTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSN 779

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            +A  G+W      +  M + G+ K   CSWI I N I+TF +G+  H   + I+L L  
Sbjct: 780 VFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSE 839

Query: 618 LTWEMEDEG 626
           +T  +  EG
Sbjct: 840 ITEMLRREG 848



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 203/374 (54%), Gaps = 11/374 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ---GVRPSGFT 149
           +   +D A ++F+ +P   V SWN+++  Y S G +  A+ ++  M+     G  P G T
Sbjct: 107 RCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCT 166

Query: 150 FSILLSTVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF--L 204
            + +L    +   G+   ++HG  ++ GL  S +V  N+LI MY K G+L  A  VF  L
Sbjct: 167 LASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLV-ANALIGMYAKCGLLDSALRVFEWL 225

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
             +  D+ SWNS++SGC  +G    AL  F  M+ +G+  + YT   V+  C +L  L  
Sbjct: 226 QQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSL 285

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+++ A  +K G   N I  +A + +++K  R++ ++R+F Q+   DY   N M+S Y +
Sbjct: 286 GRELHAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQ 344

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVV 383
             F   A++ F  ML+   +P    +  + S++  +  + +G +FH+ AIK    ++  V
Sbjct: 345 NSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQV 404

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++LM+MY K GSI+ S ++F  +  RD +SW TI+    Q+ R +E L++  EL +EG+
Sbjct: 405 GNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGI 464

Query: 444 PPDRITLAAVLLAC 457
             D + + ++L  C
Sbjct: 465 MVDSMMIGSILETC 478



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 11/220 (5%)

Query: 264 KGKQVFALSVKVGFLS---NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +G+QV A +V  G L+   +  + +  + ++ +C R++D+ RLF  +        N ++ 
Sbjct: 75  EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG-----SQFHSMAIKS 375
            Y   G    A+ ++  M R    P      C L+S+       G      + H +A+K 
Sbjct: 135 AYLSSGSAGEAMRVYGAM-RASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKV 193

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIF--VKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           G D + +VA++L+ MYAK G +DS+  +F  ++ D RD+ SWN+++ G  QNGR  E L 
Sbjct: 194 GLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALA 253

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           +F  +   G P +  T  AVL  C   G +  G  + +A+
Sbjct: 254 LFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAAL 293



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 36/256 (14%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C   KS    K +H +  + G      L NR +D+Y   G  D  L LF  + +K+
Sbjct: 474 ILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKD 532

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                                SMI+   + G  + A+ +F++MQ 
Sbjct: 533 IVSW-------------------------------TSMINCCTNNGRLNGAVFLFTEMQK 561

Query: 141 QGVRPSGFTF-SILLST--VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             ++P      SIL++   +SS   GKQ+HG +IR    +   V+ +SL+DMY   G + 
Sbjct: 562 ANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVV-SSLVDMYSGCGSMN 620

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           YA  VF   +  D++ W ++I+     G+G+ A+D F  M  +G +PD  +   ++ AC+
Sbjct: 621 YAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACS 680

Query: 258 KLRNLDKGKQVFALSV 273
             + +++GK    + V
Sbjct: 681 HSKLVEEGKHYLDIMV 696


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 172/630 (27%), Positives = 309/630 (49%), Gaps = 82/630 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C + +  +  K IH  + + G + +  L N  L  + + G      + F  + ++
Sbjct: 185 KILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDER 244

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPE------------------------------ 109
           + +SWN+ + G  +  N D A ++ D +                                
Sbjct: 245 DGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLK 304

Query: 110 ---------PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
                    PDV +W SMISG++       AL+ F KM L GV P+    +I +++ +SA
Sbjct: 305 KKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPN----TITIASATSA 360

Query: 161 C-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           C       +G +IH   I+ G++   +V GNSLIDMY K G L  A  VF  + E D+ +
Sbjct: 361 CASLKSLQNGLEIHCFAIKMGIARETLV-GNSLIDMYSKCGKLEAARHVFDTILEKDVYT 419

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I G   +GYG  A + F  +R S   P+  T + +I+ C +  + D+   +F +  
Sbjct: 420 WNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIME 479

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G +                              + + A  N +I+ Y + G    AL 
Sbjct: 480 KDGGV------------------------------KRNTASWNSLIAGYHQLGEKNKALA 509

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG-SQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F+ M   +  P   T+  +L +      E    + H   ++   +S   VA+SL++ YA
Sbjct: 510 IFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYA 569

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K+G+I  S  +F  +  +D+++WN+I+ G   +G +     +F+++   G+ P+R TLA+
Sbjct: 570 KSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLAS 629

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           ++ A    G VDKG  VFS++ EE+ ++P  +HY  ++DL  ++G+L  AI+    MP +
Sbjct: 630 IIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIE 689

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P  SIW S+L A   +G++ L    A+R+ +L+  + + Y LL QAYA+ G++E  ++V+
Sbjct: 690 PDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVR 749

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           K+ +++ + K T   W+ ++N+++ F  G+
Sbjct: 750 KLGKESAMKKCTAQCWVEVRNKVHLFVTGD 779



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 208/448 (46%), Gaps = 42/448 (9%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A KVFD + E ++ +W++MI  Y+        +E+F  M   GV P  F F  +L  
Sbjct: 130 LKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQA 189

Query: 157 VSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + C      K IH  +IR GLS   + L NS++  + K G L  A   F NM+E D +
Sbjct: 190 CGN-CEDLETVKLIHSLVIRCGLSCY-MRLSNSILTAFVKCGKLSLARKFFGNMDERDGV 247

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN +I+G    G G+ A     +M   G+ P   T +I+I + ++L + D         
Sbjct: 248 SWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCD--------- 298

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
                          IDL  K     +SV L   +  W       MIS + +      AL
Sbjct: 299 -------------LVIDLKKKM----ESVGLAPDVYTW-----TSMISGFSQSSRISQAL 336

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           + F+ M+   + P   T++   S+   +  +++G + H  AIK G     +V +SL++MY
Sbjct: 337 DFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMY 396

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K G ++++  +F  + ++D+ +WN+++ G  Q G   +  ++F  L E  + P+ +T  
Sbjct: 397 SKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWN 456

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP- 510
           A++  C   G  D+ M +F  M+++ GV      +  +I    Q G+  KA+ I   M  
Sbjct: 457 AMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQS 516

Query: 511 --FQPGCSIWESILRASA-IYGDVKLTE 535
             F P      SIL A A +  + K+ E
Sbjct: 517 LNFSPNSVTILSILPACANVMAEKKIKE 544



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 201/473 (42%), Gaps = 60/473 (12%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGL-SLSNVVLGNSL 186
           A+     +  +G + S  T+  LL T   V S   G+++H   +R GL    N  +   L
Sbjct: 64  AITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH---VRMGLVHRVNPFVETKL 120

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + MY K G L  A  VF  M+E ++ +W+++I         +  ++ F+ M   G  PD 
Sbjct: 121 VSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDA 180

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGF-----LSNSIVLSATIDLFSKCNRLEDSV 301
           +    ++ AC    +L+  K + +L ++ G      LSNSI+ +     F KC +L  + 
Sbjct: 181 FLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTA-----FVKCGKLSLAR 235

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           + F  +D  D    NVMI+ Y + G G+ A  L   M  +  +P   T + +++S     
Sbjct: 236 KFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIAS----- 290

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK----RDLVSWNT 417
                                        Y++ G  D   ++  K++      D+ +W +
Sbjct: 291 -----------------------------YSQLGDCDLVIDLKKKMESVGLAPDVYTWTS 321

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G +Q+ R ++ LD F++++  G+ P+ IT+A+   AC     +  G+ +      + 
Sbjct: 322 MISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIH-CFAIKM 380

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA--SAIYGDVKLTE 535
           G+         +ID+  + G+L  A  +  T+  +     W S++     A YG  K  E
Sbjct: 381 GIARETLVGNSLIDMYSKCGKLEAARHVFDTI-LEKDVYTWNSMIGGYCQAGYGG-KAYE 438

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
                     +P+ + ++ +       G  +  + + ++M K+G  K    SW
Sbjct: 439 LFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASW 491


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/559 (29%), Positives = 291/559 (52%), Gaps = 46/559 (8%)

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
             FD  P+K+ +SWN  L   +++  ++ A  +F+   E DV+SWN+++SGY   G    
Sbjct: 27  HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 86

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A E+F +M  + V     +++I++S    A  G  +    +     + +V    +++  Y
Sbjct: 87  ARELFDRMPGRDV----VSWNIMVS--GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGY 140

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G+L  A  VF  M E + +SWN++++                               
Sbjct: 141 AQNGMLEEARRVFDAMPERNAVSWNAMVA------------------------------- 169

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
               A  + R +D+ K++F +       S + +L+     +++   LE++  +F+ + + 
Sbjct: 170 ----AYIQRRMMDEAKELFNMMPCRNVASWNTMLTG----YAQAGMLEEAKAVFDTMPQK 221

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D      M++ Y + G  E  L+LF  M R          +CVLS+   I  +E G Q H
Sbjct: 222 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLH 281

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
              I++G+     V ++L+ MY K G+++ +   F ++++RD+VSWNT++ G  ++G   
Sbjct: 282 GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGK 341

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E L++F+ +      PD ITL  VL AC++ G V+KG+  F +M  ++GV    EHY C+
Sbjct: 342 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCM 401

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           IDLL +AG+L +A D+   MPF+P  ++W ++L AS I+ + +L  + AE++ +L+  + 
Sbjct: 402 IDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENA 461

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y LL+  YA  G+W    +++ +M + G+ KV G SWI ++N+++TF+AG+  H   +
Sbjct: 462 GMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKE 521

Query: 610 KIYLVLRLLTWEMEDEGCV 628
           KIY  L  L   M+  G V
Sbjct: 522 KIYAFLEDLDMRMKKAGYV 540



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 176/370 (47%), Gaps = 11/370 (2%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +  Y ++G   +  +LFD +P ++ +SWNI + G  +  ++  A ++FD  P  DV 
Sbjct: 72  NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 131

Query: 114 SWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIR 172
           +W +++SGYA  G  + A  +F  M +   V  +    + +   +      K++   M  
Sbjct: 132 TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMD--EAKELFNMM-- 187

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232
                 NV   N+++  Y + G+L  A  VF  M + D +SW ++++     G  E  L 
Sbjct: 188 ---PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 244

Query: 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
            F  M   G   +    + V++ C  +  L+ G Q+    ++ G+     V +A + ++ 
Sbjct: 245 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 304

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
           KC  +ED+   FE+++  D    N MI+ Y R+GFG+ ALE+F +M     +P + TL  
Sbjct: 305 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 364

Query: 353 VLSSIPIPP-VEHG-SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-K 409
           VL++      VE G S F+SM    G  +     + ++++  + G +  + ++   +  +
Sbjct: 365 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 424

Query: 410 RDLVSWNTIM 419
            D   W  ++
Sbjct: 425 PDSTMWGALL 434



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 54/221 (24%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+++ + C  ++  C    + +    +HG L + G+    ++GN  L +Y + G  +D 
Sbjct: 256 VNRSAFA-C--VLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 312

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+E+ +++ +SWN                               +MI+GYA  G+  
Sbjct: 313 RNAFEEMEERDVVSWN-------------------------------TMIAGYARHGFGK 341

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LS 178
            ALE+F  M+    +P   T   +L+  S        H  ++  G+S            +
Sbjct: 342 EALEIFDMMRTTSTKPDDITLVGVLAACS--------HSGLVEKGISYFYSMHHDFGVTA 393

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
                  +ID+ G+ G L  A  +  +M  E D   W +L+
Sbjct: 394 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 434


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 172/577 (29%), Positives = 294/577 (50%), Gaps = 38/577 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           ++ I  C      DF   +H  + KLGF+ + Y+    +D+Y +                
Sbjct: 72  TKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGK---------------- 115

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                W+I       SD    A KVFDE+  P VV+WNS+++GY   GY   A+ +F +M
Sbjct: 116 ----CWSI-------SD----AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEM 160

Query: 139 QLQGVRPSGFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G+ P+ F+ S   +  S +     G Q+H   ++   S SNVV+G  LIDMY K   
Sbjct: 161 LKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFS-SNVVVGTGLIDMYSKCCN 219

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L  +  VF  M   ++ +W S+ISG   +     A+     M +    P+  T + ++++
Sbjct: 220 LQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSS 279

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC-NRLEDSVRLFEQLDRWDYAV 314
            +  R+ DK KQ+    +  G+ SN+ +    +  +S+C   LED  ++   +   D   
Sbjct: 280 FSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQIS 339

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAI 373
            N +I+ +   G GE ALE F  M RE      FT + +  +I +   +E G Q H +  
Sbjct: 340 WNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVY 399

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K+G+  N  V + L+ MYA++G+I  S  +F  +++ DL+SWN+++ G   +G   E +D
Sbjct: 400 KTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAID 459

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-EHYACIIDL 492
           +FE++    + PD  +  AVL AC++ G +DKG+  F  M+    V P + EHYA ++DL
Sbjct: 460 LFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDL 519

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
             +AG+L +A     ++P +PG SI++++L A  I+G+  +    A+++++L    P  Y
Sbjct: 520 FGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATY 579

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            +L+ A    G W+    ++++M   G+ K  G SW+
Sbjct: 580 IMLSNALGRDGYWDDAASIRRLMSNRGVKKEPGFSWM 616



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 169/325 (52%), Gaps = 4/325 (1%)

Query: 145 PSGFTFSILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           P   T +I + T S+    G Q+H ++I+ G SL N  +  +L+DMYGK   +  A  VF
Sbjct: 68  PPILTKTISICTKSTLLDFGIQVHSTIIKLGFSL-NPYIFTALVDMYGKCWSISDAHKVF 126

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M    +++WNSL++G   +GY  +A+  F  M   G  P  +++S  +  C++L+  D
Sbjct: 127 DEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGD 186

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G Q+ A+S+K+ F SN +V +  ID++SKC  L+DS R+F+ +   +      MIS Y 
Sbjct: 187 LGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYA 246

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAV 382
           R      A+ L + ML  +++P   T + +LSS   P   +   Q H   I  G++SN  
Sbjct: 247 RNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNY 306

Query: 383 VASSLMEMYAK-TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
           +A +L+  Y++  GS++   ++   +   D +SWN ++ G T  G   E L+ F ++  E
Sbjct: 307 IAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRRE 366

Query: 442 GLPPDRITLAAVLLACNYGGFVDKG 466
               D  T  ++  A      +++G
Sbjct: 367 KFDVDFFTFTSIFKAIGMTSALEEG 391



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 120/215 (55%), Gaps = 1/215 (0%)

Query: 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           G  P    ++  I+ CTK   LD G QV +  +K+GF  N  + +A +D++ KC  + D+
Sbjct: 63  GSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDA 122

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPI 359
            ++F+++        N +++ Y + G+  +A+ LF  ML++ I PT F+LS  ++    +
Sbjct: 123 HKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQL 182

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
              + GSQ H+M++K  F SN VV + L++MY+K  ++  S  +F  +  +++ +W +++
Sbjct: 183 QKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMI 242

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
            G  +N    E + +  E+L   L P+ +T  ++L
Sbjct: 243 SGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLL 277


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 318/605 (52%), Gaps = 45/605 (7%)

Query: 35  KTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           + +HGH+ + G  +    L N  +++Y++ G                             
Sbjct: 394 REVHGHILRTGLIDLKIALSNGLVNMYAKCGA---------------------------- 425

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              +D A +VF  +   D VSWN++IS     G+ + A+  +  M+   + PS F     
Sbjct: 426 ---IDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISG 482

Query: 154 LSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           LS+ +S      G+Q+H   ++ GL L   V  N+L+ MYG  G    ++ +F +M E D
Sbjct: 483 LSSCASLRLLTAGQQVHCDAVKWGLDLDTSV-SNALVKMYGDCGARSESWEIFNSMAEHD 541

Query: 211 IISWNSLISGCFNSGYGELA--LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           I+SWNS++ G   S +   A  ++ F +M  SG +P++ T   +++A + L  L+ GKQV
Sbjct: 542 IVSWNSIM-GVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQV 600

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGF 327
            A+ +K G + ++ V +A +  ++K   ++   +LF  +  R D    N MIS Y   G 
Sbjct: 601 HAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGH 660

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
            +  ++   LM+  +      T S VL++   +  +E G + H+  I+S  +S+ VV S+
Sbjct: 661 LQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESA 720

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L++MY+K G ID ++++F  + +++  SWN+++ G  ++G   + L++FEE+   G  PD
Sbjct: 721 LLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPD 780

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            +T  +VL AC++ G VD+G+  F  M E++G++P  EHY+C+IDLL +AG+L K  +  
Sbjct: 781 HVTFVSVLSACSHAGLVDRGLDYFEMM-EDHGILPHIEHYSCVIDLLGRAGKLLKIQEYI 839

Query: 507 STMPFQPGCSIWESILRASAIYGD---VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
           + MP +P   IW ++L A     D   + L +  +  +++L+  +P+ Y L +  YA  G
Sbjct: 840 NRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATG 899

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RWE   + +  M    + K  G SW+ + + ++TF AG+  H   ++IY  L  L  +++
Sbjct: 900 RWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIK 959

Query: 624 DEGCV 628
           + G V
Sbjct: 960 NAGYV 964



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 250/532 (46%), Gaps = 61/532 (11%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +   + K G ++  Y+G+  +  ++R G  D+   +F  + ++N ++ N  + GL+K   
Sbjct: 292 VFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHC 351

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
            + A+ +F    +  VV+ +                                TF +LLS 
Sbjct: 352 SEEAVGIFMGTRDSFVVNTD--------------------------------TFVVLLSA 379

Query: 157 VSS-------ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           V+           G+++HG ++R+GL    + L N L++MY K G +  A  VF  +   
Sbjct: 380 VAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCAR 439

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D +SWN++IS    +G+ E A+  +  MR    SP  +     +++C  LR L  G+QV 
Sbjct: 440 DRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVH 499

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY----AVINVMISTYGRY 325
             +VK G   ++ V +A + ++  C    +S  +F  +   D     +++ VM+S++   
Sbjct: 500 CDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPT 559

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVA 384
                ++E+F  M+R  + P + T   +LS++ P+  +E G Q H++ +K G   +  V 
Sbjct: 560 A---ESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVD 616

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
           ++LM  YAK+G +DS  ++F  +  +RD VSWN+++ G   NG   ET+D    ++    
Sbjct: 617 NALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQ 676

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQL 499
             D  T + VL AC     +++GM + +     +G+    E      + ++D+  + G++
Sbjct: 677 MLDCCTFSIVLNACASVAALERGMEMHA-----FGIRSQLESDVVVESALLDMYSKCGRI 731

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
             A  + ++M  +   S W S++   A +G   L E   E   ++Q     P
Sbjct: 732 DYASKVFNSMSQKNEFS-WNSMISGYARHG---LGEKALEIFEEMQRNGACP 779



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 199/426 (46%), Gaps = 46/426 (10%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S +     + +H    K G +  T + N  + +Y   G   +             
Sbjct: 483 LSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSE------------- 529

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNS----MISGYASCGYSDYALEMFSK 137
            SW I                 F+ + E D+VSWNS    M+S +A    S   +E+FS 
Sbjct: 530 -SWEI-----------------FNSMAEHDIVSWNSIMGVMVSSHAPTAES---VEVFSN 568

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G+ P+  TF  LLS +S       GKQ+H  +++ G    N V  N+L+  Y K G
Sbjct: 569 MMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAV-DNALMSCYAKSG 627

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            +     +F +M    D +SWNS+ISG   +G+ +  +D  + M +S    D  T SIV+
Sbjct: 628 DMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVL 687

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
           NAC  +  L++G ++ A  ++    S+ +V SA +D++SKC R++ + ++F  + + +  
Sbjct: 688 NACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEF 747

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMA 372
             N MIS Y R+G GE ALE+F+ M R    P   T   VLS+      V+ G  +  M 
Sbjct: 748 SWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMM 807

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAET 431
              G   +    S ++++  + G +    E   ++  K + + W T+++   Q+ +  + 
Sbjct: 808 EDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQS-KDGDR 866

Query: 432 LDVFEE 437
           +D+ +E
Sbjct: 867 IDLGKE 872



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 186/414 (44%), Gaps = 56/414 (13%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  L K G     +L N  ++LY++        Q+FD + ++N +SW  CL      
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWT-CL------ 128

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG---VRPSGFTFS 151
                                   +SGY   G +D A  +F  M  +G    RP+ FTF 
Sbjct: 129 ------------------------VSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFG 164

Query: 152 ILLSTVSSA-----CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK--LGVLYYAFGVFL 204
            +L     A         Q+HG ++   +  SN  + N+LI MYG   +G+   A  VF 
Sbjct: 165 SVLRACQDAGPDLLAFAVQVHG-LVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFD 223

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS----PDEYTISIVINACTKLR 260
                D+I+WN+L+S     GY       F +M +   +    P+E+T   +I A T L 
Sbjct: 224 TTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITA-TSLS 282

Query: 261 NLDKG--KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           +   G   QVFA  +K G  S+  V SA +  F++   L+++  +F  L   +   +N +
Sbjct: 283 SCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGL 342

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-----SIPIPPVEHGSQFHSMAI 373
           I    +    E A+ +F +  R+       T   +LS     SIP   +  G + H   +
Sbjct: 343 IVGLVKQHCSEEAVGIF-MGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHIL 401

Query: 374 KSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           ++G  D    +++ L+ MYAK G+ID ++ +F  L  RD VSWNTI+  L QNG
Sbjct: 402 RTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNG 455



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 24/290 (8%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           +++H  +++ GL+  ++ L N L+++Y K   L  A  VF  M E + +SW  L+SG   
Sbjct: 76  ERLHLELVKRGLT-HDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVL 134

Query: 224 SGYGELALDQFYSMRYSGYS---PDEYTISIVINACTKLRNLDKGKQVFALSVKVG---- 276
           SG  + A   F +M + G     P  +T   V+ AC      D G  + A +V+V     
Sbjct: 135 SGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQ-----DAGPDLLAFAVQVHGLVS 189

Query: 277 ---FLSNSIVLSATIDLFSKCN--RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
              + SN+ V +A I ++  C+      + ++F+     D    N ++S Y + G+    
Sbjct: 190 KTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVST 249

Query: 332 LELFQLMLRED----IRPTEFTLSCVLSSIPIPPVEHG--SQFHSMAIKSGFDSNAVVAS 385
             LF  ML +D    +RP E T   ++++  +     G   Q  +  +KSG  S+  V S
Sbjct: 250 FTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGS 309

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           +L+  +A+ G +D + +IF+ L +R+ V+ N +++GL +   + E + +F
Sbjct: 310 ALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF 359



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           FLSN +V     +L++K +RL  + ++F+ +   +      ++S Y   G  + A  +F+
Sbjct: 92  FLSNHLV-----NLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFK 146

Query: 337 LMLREDI---RPTEFTLSCVLSSIP-IPP--VEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            ML E     RPT FT   VL +     P  +    Q H +  K+ + SN  V ++L+ M
Sbjct: 147 AMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISM 206

Query: 391 YAK--TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG----LP 444
           Y     G    + ++F     RDL++WN +M    + G    T  +F  +L +     L 
Sbjct: 207 YGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELR 266

Query: 445 PDRITLAAVLLA 456
           P+  T  +++ A
Sbjct: 267 PNEHTFGSLITA 278



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C S  + +    +H    +    +   + +  LD+YS+ G  D   ++F+ + Q
Sbjct: 684 SIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQ 743

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           KN  SWN  + G  +    + AL++F+E+      PD V++ S++S  +  G  D  L+ 
Sbjct: 744 KNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDY 803

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSA 160
           F  M+  G+ P    +S ++  +  A
Sbjct: 804 FEMMEDHGILPHIEHYSCVIDLLGRA 829



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H   +K G   +  +++ L+ +YAK   + ++ ++F  + +R+ VSW  ++ G   +G
Sbjct: 77  RLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSG 136

Query: 427 RAAETLDVFEELLEEGLP---PDRITLAAVLLACNYGG 461
              E   VF+ +L EG     P   T  +VL AC   G
Sbjct: 137 ITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 266/466 (57%), Gaps = 2/466 (0%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            GK  H  ++  GL  ++++  N LI+MY K G + +A  VF  M    ++SWN++I   
Sbjct: 82  QGKACHAQILLMGLK-TDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSL 140

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G    ALD    M+  G    E+TIS V+ AC     L + + + A ++K     N 
Sbjct: 141 TQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNV 200

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A +D+++KC  ++D+V +FE +        + M + Y +    E AL LF+     
Sbjct: 201 FVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWET 260

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            ++  +F +S V+ +   +  +  G Q +++  KSGF SN  VASSL++MYAK G I+ S
Sbjct: 261 GLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEES 320

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F  ++KR++V WN ++ GL+++ R+ E + +FE++ + GL P+ +T  +VL AC + 
Sbjct: 321 YKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHM 380

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G V KG   F  M +E+ + P   HY+C++D L +AGQ+ +A D+ S +PF    S+W S
Sbjct: 381 GLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGS 440

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L +   +G+++L E  A+++ D++  +   Y LL+  YA  G+W+ + +++K+++++ +
Sbjct: 441 LLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDV 500

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            K  G SWI IK++++ F  GE  H    +IY  L  +  E++  G
Sbjct: 501 KKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLG 546



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 197/422 (46%), Gaps = 38/422 (9%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N   +S+  +++  C   K     K  H  +  +G        N  +++YS+ G+     
Sbjct: 60  NATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGS----- 114

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                     +D A +VFDE+P   +VSWN+MI      G  + 
Sbjct: 115 --------------------------VDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENE 148

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL++  +MQ +G   S FT S +L   ++ C     + +H   I++ + L NV +  +L+
Sbjct: 149 ALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDL-NVFVATALL 207

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D+Y K G++  A  VF +M +  +++W+S+ +G   +   E AL  F     +G   D++
Sbjct: 208 DVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF 267

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +S VI AC  L  + +GKQ+ AL  K GF SN  V S+ ID+++KC  +E+S ++F  +
Sbjct: 268 LMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDV 327

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGS 366
           ++ +  + N MIS   R+      + LF+ M +  + P + T   VLS+   +  V  G 
Sbjct: 328 EKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQ 387

Query: 367 QFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQ 424
           ++  +  K      N    S +++  ++ G I  + ++  KL      S W +++     
Sbjct: 388 KYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 425 NG 426
           +G
Sbjct: 448 HG 449


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 266/466 (57%), Gaps = 2/466 (0%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            GK  H  ++  GL  ++++  N LI+MY K G + +A  VF  M    ++SWN++I   
Sbjct: 82  QGKACHAQILLMGLK-TDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSL 140

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +G    ALD    M+  G    E+TIS V+ AC     L + + + A ++K     N 
Sbjct: 141 TQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNV 200

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A +D+++KC  ++D+V +FE +        + M + Y +    E AL LF+     
Sbjct: 201 FVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWET 260

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            ++  +F +S V+ +   +  +  G Q +++  KSGF SN  VASSL++MYAK G I+ S
Sbjct: 261 GLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEES 320

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F  ++KR++V WN ++ GL+++ R+ E + +FE++ + GL P+ +T  +VL AC + 
Sbjct: 321 YKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHM 380

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G V KG   F  M +E+ + P   HY+C++D L +AGQ+ +A D+ S +PF    S+W S
Sbjct: 381 GLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGS 440

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L +   +G+++L E  A+++ D++  +   Y LL+  YA  G+W+ + +++K+++++ +
Sbjct: 441 LLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDV 500

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            K  G SWI IK++++ F  GE  H    +IY  L  +  E++  G
Sbjct: 501 KKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLG 546



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 198/422 (46%), Gaps = 38/422 (9%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N   +S+  +++  C   K     K  H  +  +G        N  +++YS+ G+     
Sbjct: 60  NATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGS----- 114

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                     +D A +VFDE+P   +VSWN+MI      G  + 
Sbjct: 115 --------------------------VDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENE 148

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL++  +MQ +G   S FT S +L   ++ C     + +H   I++ + L NV +  +L+
Sbjct: 149 ALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDL-NVFVATALL 207

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D+Y K G++  A  VF +M +  +++W+S+ +G   +   E AL  F     +G   D++
Sbjct: 208 DVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQF 267

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +S VI AC  L  + +GKQV AL  K GF SN  V S+ ID+++KC  +E+S ++F  +
Sbjct: 268 LMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDV 327

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGS 366
           ++ +  + N MIS   R+      + LF+ M +  + P + T   VLS+   +  V+ G 
Sbjct: 328 EKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQ 387

Query: 367 QFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQ 424
           ++  +  K      N    S +++  ++ G I  + ++  KL      S W +++     
Sbjct: 388 KYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 425 NG 426
           +G
Sbjct: 448 HG 449


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 180/620 (29%), Positives = 307/620 (49%), Gaps = 46/620 (7%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + L+  C +    +     H  + K     + ++GN  +D+Y++ G  +D  Q+F+ +  
Sbjct: 432  TSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM-- 489

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                    C R                     D V+WN++I  Y        A ++F +M
Sbjct: 490  --------CDR---------------------DNVTWNTIIGSYVQDENESEAFDLFKRM 520

Query: 139  QLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
             L G+   G   + L ST+ +  H      GKQ+H   ++ GL   ++  G+SLIDMY K
Sbjct: 521  NLCGIVSDG---ACLASTLKACTHVHGLYQGKQVHCLSVKCGLD-RDLHTGSSLIDMYSK 576

Query: 193  LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
             G++  A  VF ++ E  ++S N+LI+G ++    E A+  F  M   G +P E T + +
Sbjct: 577  CGIIKDARKVFSSLPEWSVVSMNALIAG-YSQNNLEEAVVLFQEMLTRGVNPSEITFATI 635

Query: 253  INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSKCNRLEDSVRLFEQLDRWD 311
            + AC K  +L  G Q      K GF S    L  ++  ++     + ++  LF +L    
Sbjct: 636  VEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPK 695

Query: 312  YAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFH 369
              V+   M+S + + GF E AL+ ++ M  + + P + T   VL    +   +  G   H
Sbjct: 696  SIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIH 755

Query: 370  SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNGRA 428
            S+      D + + +++L++MYAK G +  S+++F ++ +R ++VSWN+++ G  +NG A
Sbjct: 756  SLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYA 815

Query: 429  AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
             + L +F+ + +  + PD IT   VL AC++ G V  G  +F  M  +YG+    +H AC
Sbjct: 816  EDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVAC 875

Query: 489  IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
            ++DLL + G L +A D       +P   +W S+L A  I+GD    E  AE++++L+  +
Sbjct: 876  MVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQN 935

Query: 549  PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
               Y LL+  YA +G WE    ++KVMR  G+ KV G SWI ++ R + F AG+  H   
Sbjct: 936  SSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEI 995

Query: 609  QKIYLVLRLLTWEMEDEGCV 628
             KI + L  L   M+D+  V
Sbjct: 996  GKIEMFLEDLYDLMKDDAVV 1015



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/479 (27%), Positives = 235/479 (49%), Gaps = 41/479 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C    + +F + IH  + K+G   ++Y G   +D+Y++     D  ++F+ I  
Sbjct: 164 SIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVD 223

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFD--------------------------------- 105
            N + W     G +K+   + A+ VF+                                 
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLL 283

Query: 106 --EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH- 162
             E+  PDVV+WN MISG+   G    A+E F  M+   V+ +  T   +LS +    + 
Sbjct: 284 FGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANL 343

Query: 163 --GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             G  +H   I+ GL+ SN+ +G+SL+ MY K   +  A  VF  +EE + + WN++I G
Sbjct: 344 DLGLVVHAEAIKLGLA-SNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             ++G     ++ F  M+ SGY+ D++T + +++ C    +L+ G Q  ++ +K     N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V +A +D+++KC  LED+ ++FE++   D    N +I +Y +      A +LF+ M  
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
             I      L+  L +   +  +  G Q H +++K G D +    SSL++MY+K G I  
Sbjct: 523 CGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKD 582

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           + ++F  L +  +VS N ++ G +QN    E + +F+E+L  G+ P  IT A ++ AC+
Sbjct: 583 ARKVFSSLPEWSVVSMNALIAGYSQNN-LEEAVVLFQEMLTRGVNPSEITFATIVEACH 640



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 212/460 (46%), Gaps = 68/460 (14%)

Query: 24  RCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           R LS+ S D  + I+GH+       H  L   CL     F +     ++FDE+PQ+  ++
Sbjct: 21  RRLSY-SPDLGRRIYGHVLPSHDQIHQRLLEICLGQCKLFKSR----KVFDEMPQRLALA 75

Query: 84  WNI--------CLRGLLKSDNLDTAL--------------KVFDEIPEPDVVSWNSMISG 121
             I         + G+     L  A+              K FD + E DV +WNSM+S 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSM 134

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLS 178
           Y+S G     L  F  +    + P+ FTFSI+LST +   +   G+QIH SMI+ GL   
Sbjct: 135 YSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLE-R 193

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           N   G +L+DMY K   +  A  VF  + + + + W  L SG   +G  E A+  F  MR
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G+ PD      VIN   +L                                    +L+
Sbjct: 254 DEGHRPDHLAFVTVINTYIRL-----------------------------------GKLK 278

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           D+  LF ++   D    NVMIS +G+ G   VA+E F  M +  ++ T  TL  VLS+I 
Sbjct: 279 DARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIG 338

Query: 359 I-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
           I   ++ G   H+ AIK G  SN  V SSL+ MY+K   ++++ ++F  L++++ V WN 
Sbjct: 339 IVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNA 398

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++ G   NG + + +++F ++   G   D  T  ++L  C
Sbjct: 399 MIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTC 438


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 166/591 (28%), Positives = 297/591 (50%), Gaps = 45/591 (7%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +    +  + +HG   K G++A   + N  +D+Y++ G   D    F E P       
Sbjct: 175 CAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPG----- 229

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ--G 142
                                     +VVSWN M+ GYA  G +  A  +  +MQ++  G
Sbjct: 230 -----------------------AGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERG 266

Query: 143 VRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           V        I + +V   C G       +++H  ++R GL L+  ++ N+LI  YG+ G 
Sbjct: 267 VPAD----EITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGC 322

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVIN 254
           L +A  VF  +    + SWN+LI     +G    A++ F  M  + G  PD ++I  ++ 
Sbjct: 323 LLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLL 382

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L++L  GK      ++ G   +S +  + + ++ +C R   +  LF+ ++  D   
Sbjct: 383 ACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVS 442

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIR--PTEFT-LSCVLSSIPIPPVEHGSQFHSM 371
            N MI+ Y + G    +L+LF+ M  +     P+     S +++   +P V  G + H  
Sbjct: 443 WNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCF 502

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           A+K+    ++ ++SS+++MY+K GS+D +   F +L  +D VSW  ++ G   NGR  E 
Sbjct: 503 ALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEA 562

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           + +++++  EG+ PD  T   +L+AC + G ++ G+  F  M+    +    EHYAC+I 
Sbjct: 563 VGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIG 622

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           +L +AG+   A+ +   MP +P   I  S+L A  ++G+V+L + VA+++++L+      
Sbjct: 623 MLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEH 682

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           Y L +  YA   +W+ + +V+K++R  G+ K  GCSWI I  ++Y+F AGE
Sbjct: 683 YVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGE 733



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 201/445 (45%), Gaps = 54/445 (12%)

Query: 32  DFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           D  + +H    KLG  +   ++GN  + +Y R G  DD  ++F+ +  +N          
Sbjct: 80  DDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRN---------- 129

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                +VSWN++++  A        LE+F    L+ +  +    
Sbjct: 130 ---------------------LVSWNALMAAVAD---PRRGLELFRDC-LEDLGGTAAPD 164

Query: 151 SILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
              L TV   C        G+ +HG  ++SG   +  V  N L+DMY K G +  A   F
Sbjct: 165 EATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRV-SNVLVDMYAKCGEMADAECAF 223

Query: 204 LNMEE---LDIISWNSLISGCFNSGYGELALDQFYSMRYS--GYSPDEYTISIVINACTK 258
           L        +++SWN ++ G   +G    A      M+    G   DE T+  V+  C+ 
Sbjct: 224 LEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSG 283

Query: 259 LRNLDKGKQVFALSVKVGF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           L  L K +++ A  V+ G  L+  +V +A I  + +C  L  + R+F+ +     +  N 
Sbjct: 284 LPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNA 343

Query: 318 MISTYGRYGFGEVALELFQLMLRE-DIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKS 375
           +I  + + G    A+ELF+ M      +P  F++ S +L+   +  + HG   H   +++
Sbjct: 344 LIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRN 403

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
           G + ++ +  SL+ +Y + G    +  +F  ++++D VSWNT++ G +QNG   E+L +F
Sbjct: 404 GLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLF 463

Query: 436 EELLEE--GLPPDRITLAAVLLACN 458
            E+  +  G  P  +   + L+AC+
Sbjct: 464 REMQSKKGGHWPSLLAATSALVACS 488



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 173/358 (48%), Gaps = 19/358 (5%)

Query: 115 WNSMISGYASCGYSDYALEMFSKM--QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIR 172
           WN +++  +  G    AL +  ++     GV P  FT    L +      G+Q+H    +
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGD-DGRQVHAVAAK 91

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG-ELAL 231
            GL+  +  +GNSL+ MYG+ G +  A  VF  M   +++SWN+L++   +   G EL  
Sbjct: 92  LGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRGLELFR 151

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           D    +  +  +PDE T+  V+  C  L   + G+ V  L+VK G+ +   V +  +D++
Sbjct: 152 DCLEDLGGTA-APDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMY 210

Query: 292 SKCNRLEDSVRLF-EQLDRWDYAVI--NVMISTYGRYGFGEVALELFQLMLRED--IRPT 346
           +KC  + D+   F E        V+  NVM+  Y R G    A  L + M  E+  +   
Sbjct: 211 AKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPAD 270

Query: 347 EFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFD-SNAVVASSLMEMYAKTGSIDSST 401
           E T+   LS +P+    P +    + H+  ++ G   +  +V ++L+  Y + G +  + 
Sbjct: 271 EITM---LSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHAC 327

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDRITLAAVLLACN 458
            +F  +  + + SWN ++    QNG A+  +++F E+    G  PD  ++ ++LLAC 
Sbjct: 328 RVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACG 385



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 47/338 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C + K     K  HG + + G    +++    L +Y + G       LFD + +K+
Sbjct: 380 LLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKD 439

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                               N+MI+GY+  G    +L++F +MQ 
Sbjct: 440 EVSW-------------------------------NTMIAGYSQNGLPGESLQLFREMQS 468

Query: 141 QGVRPSGFTFSILLSTVSS--ACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +     G  +  LL+  S+  AC        GK++H   +++ L   +  L +S+IDMY 
Sbjct: 469 K----KGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLC-EDSFLSSSIIDMYS 523

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A   F  ++  D +SW  +I+G   +G G+ A+  +  M   G  PD +T   
Sbjct: 524 KCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLG 583

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFEQL-DR 309
           ++ AC     L+ G   F     +  +   +   A  I + S+  R  D+V L E + + 
Sbjct: 584 LLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEE 643

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
            D  +++ ++S    +G  E+  ++   +L  +    E
Sbjct: 644 PDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAE 681



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 15/194 (7%)

Query: 316 NVMISTYGRYGFGEVALELFQLML--REDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAI 373
           N +++   R G    AL +   +L   + + P  FTL   L S      + G Q H++A 
Sbjct: 34  NGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCR---GDDGRQVHAVAA 90

Query: 374 KSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           K G  D +  V +SL+ MY + G +D + ++F  +  R+LVSWN +M  +    R    L
Sbjct: 91  KLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRRG---L 147

Query: 433 DVFEELLEE---GLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYAC 488
           ++F + LE+      PD  TL  VL  C    + + G  V   A+K  +   P   +   
Sbjct: 148 ELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNV-- 205

Query: 489 IIDLLCQAGQLGKA 502
           ++D+  + G++  A
Sbjct: 206 LVDMYAKCGEMADA 219


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 291/557 (52%), Gaps = 46/557 (8%)

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD  P+K+ +SWN  L   +++  ++ A  +F+   E DV+SWN+++SGY   G    A 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           E+F +M  + V     +++I++S    A  G  +    +     + +V    +++  Y +
Sbjct: 214 ELFDRMPGRDV----VSWNIMVS--GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G+L  A  VF  M E + +SWN++++                                 
Sbjct: 268 NGMLEEARRVFDAMPERNAVSWNAMVA--------------------------------- 294

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
             A  + R +D+ K++F +       S + +L+     +++   LE++  +F+ + + D 
Sbjct: 295 --AYIQRRMMDEAKELFNMMPCRNVASWNTMLTG----YAQAGMLEEAKAVFDTMPQKDA 348

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
                M++ Y + G  E  L+LF  M R          +CVLS+   I  +E G Q H  
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            I++G+     V ++L+ MY K G+++ +   F ++++RD+VSWNT++ G  ++G   E 
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L++F+ +      PD ITL  VL AC++ G V+KG+  F +M  ++GV    EHY C+ID
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG+L +A D+   MPF+P  ++W ++L AS I+ + +L  + AE++ +L+  +   
Sbjct: 529 LLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGM 588

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL+  YA  G+W    +++ +M + G+ KV G SWI ++N+++TF+AG+  H   +KI
Sbjct: 589 YVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKI 648

Query: 612 YLVLRLLTWEMEDEGCV 628
           Y  L  L   M+  G V
Sbjct: 649 YAFLEDLDMRMKKAGYV 665



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 182/412 (44%), Gaps = 36/412 (8%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
           H F L         N  L  Y R G  ++   LF+   + + ISWN  + G ++   +  
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A ++FD +P  DVVSWN M+SGYA  G    A  +F    ++ V    FT++ ++S  + 
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQ 267

Query: 159 ----------------------SACHGKQIHGSMIRSGLSL------SNVVLGNSLIDMY 190
                                 +A     I   M+     L       NV   N+++  Y
Sbjct: 268 NGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGY 327

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G+L  A  VF  M + D +SW ++++     G  E  L  F  M   G   +    +
Sbjct: 328 AQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFA 387

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V++ C  +  L+ G Q+    ++ G+     V +A + ++ KC  +ED+   FE+++  
Sbjct: 388 CVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQF 368
           D    N MI+ Y R+GFG+ ALE+F +M     +P + TL  VL++      VE G S F
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +SM    G  +     + ++++  + G +  + ++   +  + D   W  ++
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 54/221 (24%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+++ + C  ++  C    + +    +HG L + G+    ++GN  L +Y + G  +D 
Sbjct: 381 VNRSAFA-C--VLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+E+ +++ +SWN                               +MI+GYA  G+  
Sbjct: 438 RNAFEEMEERDVVSWN-------------------------------TMIAGYARHGFGK 466

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LS 178
            ALE+F  M+    +P   T   +L+  S        H  ++  G+S            +
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACS--------HSGLVEKGISYFYSMHHDFGVTA 518

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
                  +ID+ G+ G L  A  +  +M  E D   W +L+
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 168/535 (31%), Positives = 280/535 (52%), Gaps = 40/535 (7%)

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMI 171
           VV  NS+IS Y  CG    A+++F +M             I   T+S       + G  +
Sbjct: 84  VVIMNSLISMYDRCGKLPDAVKVFDEM-------------ITRDTIS----WNALIGGFV 126

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
           R+G S             Y K G +     VF  M E ++I+W ++ISG   +GY E +L
Sbjct: 127 RNGNS-------------YFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSL 173

Query: 232 DQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
             F  M  Y    P+  T   ++ AC+ L  L +G Q+  L +K+G  S+  + SA +D+
Sbjct: 174 KLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDM 233

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           +SK  R+ ++ ++FE  +  D   + V+++ +   G  E A+++F  ML+  I      +
Sbjct: 234 YSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVV 293

Query: 351 SCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           S VL        +  G Q HS  +K  F  N  V++ L+ MY+K G++D S ++F ++ +
Sbjct: 294 SVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRE 353

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           R+ V+WN+++    ++G A + L ++E++  EG  P  +T  ++L AC++ G V KGM  
Sbjct: 354 RNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEF 413

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
             +M +++G+ P  EH+AC++D+L +AG L +A +    +P QPG  +W+++L A ++YG
Sbjct: 414 LKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYG 473

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           D K+ +  AE +      SP+PY LL   Y+  G W+   R  + M++ G  K TG SWI
Sbjct: 474 DSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWI 533

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV--------YLECDKLD 636
            I  ++++F  G+  H   + IY VL  L   M DEG V        YL+ D+ D
Sbjct: 534 EIDKKVHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYVPDKKFILYYLDDDRRD 588



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 235/459 (51%), Gaps = 22/459 (4%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLG----NRCLDLYSRFGTSDDVLQLFD 74
           S L+  C    +     ++H  + K    ++ Y G    N  + +Y R G   D +++FD
Sbjct: 49  SFLLSICGREGNLHLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFD 108

Query: 75  EIPQKNCISWNICLRGLLKSDN-------LDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           E+  ++ ISWN  + G +++ N       +   ++VF E+ E +V++W ++ISG A  GY
Sbjct: 109 EMITRDTISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGY 168

Query: 128 SDYALEMFSKMQLQG-VRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLG 183
            +++L++F +M   G V P+  T+  LL+  S   +   G QIHG +++ G+  S++ +G
Sbjct: 169 HEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQ-SDLCIG 227

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           ++L+DMY K G +  A+ +F   EELD++S   +++G  ++G  E A+  F  M   G  
Sbjct: 228 SALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIE 287

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            D   +S+V+       +L  G+QV +  VK  F+ N  V +  I+++SKC  L++S+++
Sbjct: 288 IDGNVVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKV 347

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-V 362
           F+++   +    N MI+ + R+G    AL+L++ M  E  +PT+ T   +L +      V
Sbjct: 348 FDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLV 407

Query: 363 EHGSQF-HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD-LVSWNTIMM 420
           + G +F  SM    G +  +   + +++M  + G +  +     KL ++  L+ W  ++ 
Sbjct: 408 KKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLG 467

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
             +  G +       E L  E   PD   +  VLLA  Y
Sbjct: 468 ACSLYGDSKIGKYAAEHLFSE--TPDS-PVPYVLLANIY 503



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 132/302 (43%), Gaps = 37/302 (12%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V   SL+Y S L+  C   ++      IHG + KLG  +   +G+  +D+YS        
Sbjct: 185 VEPNSLTYLS-LLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYS-------- 235

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
                                  KS  +  A K+F+   E D+VS   +++G+   G  +
Sbjct: 236 -----------------------KSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEE 272

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSL 186
            A+++F KM   G+   G   S++L    +      G+Q+H  +++    + N  + N L
Sbjct: 273 EAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKKNF-ICNPFVSNGL 331

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           I+MY K G L  +  VF  M E + ++WNS+I+     G    AL  +  M+  G  P +
Sbjct: 332 INMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTD 391

Query: 247 YTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            T   +++AC+    + KG +   +++   G    S   +  +D+  +   L ++    E
Sbjct: 392 VTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIE 451

Query: 306 QL 307
           +L
Sbjct: 452 KL 453



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 365 GSQFHSMAIKSGFDSN----AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
           GS  H+  IKS   SN     V+ +SL+ MY + G +  + ++F ++  RD +SWN ++ 
Sbjct: 64  GSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRDTISWNALIG 123

Query: 421 GLTQNGRA-------AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           G  +NG +          + VF E+ E  +    IT  AV+      G+ +  + +F  M
Sbjct: 124 GFVRNGNSYFKCGCVGLGMQVFYEMGERNV----ITWTAVISGLAQNGYHEHSLKLFKEM 179

Query: 474 KEEYGVMPGEEHYACII 490
                V P    Y  ++
Sbjct: 180 MSYGSVEPNSLTYLSLL 196


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 178/638 (27%), Positives = 305/638 (47%), Gaps = 56/638 (8%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            + L+  C      D  K +H  +   G+     +    + +Y++ G+ ++          
Sbjct: 406  ASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEE---------- 455

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                 A KVF+++PE +V+SWN+ IS          A + F +M
Sbjct: 456  ---------------------ARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQM 494

Query: 139  QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            +   V P   TF  LL++ +S      G+ IHG + + G+ LSN  + N+LI MYG+ G 
Sbjct: 495  RRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGM-LSNNHVANALISMYGRCGN 553

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            L  A  VF  +   D+ SWN++I+     G    A D F   R  G   D+YT   V+ A
Sbjct: 554  LADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRA 613

Query: 256  CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
               L +LD G+ +  L  K GF  +  VL+  I ++SKC  L D+  +F  +   D    
Sbjct: 614  VANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCW 673

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            N M++ Y     G+ AL+LFQ M  E + P   T S  L++   +  VEHG + H+   +
Sbjct: 674  NAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKE 733

Query: 375  SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            +G +++  V++SL+EMY++ G + S+ ++F K+  RD+ SWN ++ G  QNG+    L+ 
Sbjct: 734  AGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEY 793

Query: 435  FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
            +E +L   + P++ T  ++L +    G  ++      ++K+E+ + P E+HYA ++  L 
Sbjct: 794  YELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALG 853

Query: 495  QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYS 553
            +AG L +A +    +  +    +WES+L A  I+ +V+L E   E ++D +   SP    
Sbjct: 854  RAGLLKEAEEFIEEISAESAALMWESLLVACRIHLNVELAETAVEHLLDAKAQASPAVCE 913

Query: 554  LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
             L   YA  GRWE +  +K  M++ G+  +  C+ I + +  + F A  L    G  +  
Sbjct: 914  QLMSIYAAAGRWEDVSVLKTTMQEAGLVALKSCT-IEVNSEFHNFIANHLSPQIG--VQC 970

Query: 614  VLRLLTWEMEDEG----------------CVYLECDKL 635
             +  L  +M D G                C++ +C +L
Sbjct: 971  KIEELVRKMTDRGFSLDPQYASNDSREKECLFFQCPEL 1008



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 263/522 (50%), Gaps = 39/522 (7%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           +A+L++ ++ + +C+  KS    K +H H+    F    YL N  + +YS+ G+ +D   
Sbjct: 97  QANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIED--- 153

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                       A  VF  + + DVVSWN+MISGYA  G    A
Sbjct: 154 ----------------------------ANNVFQAMEDKDVVSWNAMISGYALHGRDQEA 185

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLID 188
            ++F +MQ +G++P+  TF  +LS   S      G+QIH  + ++G   S+V +  +LI+
Sbjct: 186 ADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYE-SDVNVSTALIN 244

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G L  A  VF  M E +++SW ++ISG    G    AL  F  +  SG  P++ +
Sbjct: 245 MYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVS 304

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            + ++ ACT   +L +G ++ A   + G     +V +A I ++S+C  L ++ ++F+ L 
Sbjct: 305 FASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLR 364

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQ 367
             +    N MI+ YG  G  E A  LF+ M ++  +P +FT + +L+       ++ G +
Sbjct: 365 SLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKE 423

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS    +G+ ++  VA++L+ MYAK GS + + ++F ++ +R+++SWN  +    ++  
Sbjct: 424 LHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDL 483

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             E    F+++  + + PD IT   +L +C     +++G  +   +  ++G++       
Sbjct: 484 GKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKIN-QWGMLSNNHVAN 542

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            +I +  + G L  A ++   +  +   S W +++ A+  +G
Sbjct: 543 ALISMYGRCGNLADAREVFYRIRRRDLGS-WNAMIAANVQHG 583



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/535 (25%), Positives = 249/535 (46%), Gaps = 40/535 (7%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H ++ + G      +GN  + +YSR G+                               
Sbjct: 324 LHAYIKQAGLEQEVLVGNALISMYSRCGS------------------------------- 352

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A +VFD +   +  +WN+MI+GY   G  + A  +F  M+ +G +P  FT++ LL+ 
Sbjct: 353 LANARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAI 411

Query: 157 VSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
            +       GK++H  +  +G   +++ +  +LI MY K G    A  VF  M E ++IS
Sbjct: 412 CADRADLDRGKELHSQIASTGWQ-TDLTVATALISMYAKCGSPEEARKVFNQMPERNVIS 470

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WN+ IS C     G+ A   F  MR    +PD  T   ++N+CT   +L++G+ +     
Sbjct: 471 WNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKIN 530

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           + G LSN+ V +A I ++ +C  L D+  +F ++ R D    N MI+   ++G    A +
Sbjct: 531 QWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFD 590

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF+    E  +  ++T   VL ++  +  ++ G   H +  K GF  +  V ++L++MY+
Sbjct: 591 LFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYS 650

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K GS+  +  +F  + ++D+V WN ++     + R  + L +F+++  EG+ PD  T + 
Sbjct: 651 KCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYST 710

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
            L AC     V+ G  + + +KE  G+         +I++  + G L  A  +   M   
Sbjct: 711 ALNACARLTAVEHGKKIHAQLKEA-GMETDTRVSNSLIEMYSRCGCLCSAKQVFEKM-LS 768

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWE 566
              + W +++      G   +     E M+   + P+   ++ +  +YA  G  E
Sbjct: 769 RDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEE 823



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN  S +Y S  ++ C    + +  K IH  L + G    T + N  +++YSR G     
Sbjct: 701 VNPDSSTY-STALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSA 759

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASC 125
            Q+F+++  ++  SWN  + G  ++   + AL+ ++ +      P+  ++ S++S YA  
Sbjct: 760 KQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQL 819

Query: 126 GYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVSSA 160
           G  + A +    ++ +  + PS   ++ +++ +  A
Sbjct: 820 GEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRA 855


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 291/557 (52%), Gaps = 46/557 (8%)

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD  P+K+ +SWN  L   +++  ++ A  +F+   E DV+SWN+++SGY   G    A 
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           E+F +M  + V     +++I++S    A  G  +    +     + +V    +++  Y +
Sbjct: 214 ELFDRMPGRDV----VSWNIMVSGY--ARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G+L  A  VF  M E + +SWN++++                                 
Sbjct: 268 NGMLEEARRVFDAMPERNAVSWNAMVA--------------------------------- 294

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
             A  + R +D+ K++F +       S + +L+     +++   LE++  +F+ + + D 
Sbjct: 295 --AYIQRRMMDEAKELFNMMPCRNVASWNTMLTG----YAQAGMLEEAKAVFDTMPQKDA 348

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
                M++ Y + G  E  L+LF  M R          +CVLS+   I  +E G Q H  
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGR 408

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            I++G+     V ++L+ MY K G+++ +   F ++++RD+VSWNT++ G  ++G   E 
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
           L++F+ +      PD ITL  VL AC++ G V+KG+  F +M  ++GV    EHY C+ID
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           LL +AG+L +A D+   MPF+P  ++W ++L AS I+ + +L  + AE++ +L+  +   
Sbjct: 529 LLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGM 588

Query: 552 YSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKI 611
           Y LL+  YA  G+W    +++ +M + G+ KV G SWI ++N+++TF+AG+  H   +KI
Sbjct: 589 YVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKI 648

Query: 612 YLVLRLLTWEMEDEGCV 628
           Y  L  L   M+  G V
Sbjct: 649 YAFLEDLDMRMKKAGYV 665



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 182/412 (44%), Gaps = 36/412 (8%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
           H F L         N  L  Y R G  ++   LF+   + + ISWN  + G ++   +  
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A ++FD +P  DVVSWN M+SGYA  G    A  +F    ++ V    FT++ ++S  + 
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQ 267

Query: 159 ----------------------SACHGKQIHGSMIRSGLSL------SNVVLGNSLIDMY 190
                                 +A     I   M+     L       NV   N+++  Y
Sbjct: 268 NGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGY 327

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G+L  A  VF  M + D +SW ++++     G  E  L  F  M   G   +    +
Sbjct: 328 AQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFA 387

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V++ C  +  L+ G Q+    ++ G+     V +A + ++ KC  +ED+   FE+++  
Sbjct: 388 CVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQF 368
           D    N MI+ Y R+GFG+ ALE+F +M     +P + TL  VL++      VE G S F
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +SM    G  +     + ++++  + G +  + ++   +  + D   W  ++
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 54/221 (24%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+++ + C  ++  C    + +    +HG L + G+    ++GN  L +Y + G  +D 
Sbjct: 381 VNRSAFA-C--VLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+E+ +++ +SWN                               +MI+GYA  G+  
Sbjct: 438 RNAFEEMEERDVVSWN-------------------------------TMIAGYARHGFGK 466

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LS 178
            ALE+F  M+    +P   T   +L+  S        H  ++  G+S            +
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACS--------HSGLVEKGISYFYSMHHDFGVTA 518

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
                  +ID+ G+ G L  A  +  +M  E D   W +L+
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 260/461 (56%), Gaps = 2/461 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK  HG +IR GL  ++ +  N L++MY K G++  A  VF  + E  ++SWN +I  C 
Sbjct: 17  GKACHGQVIRLGLE-TDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCV 75

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G  E A+D F  M+  G    E+T+S V+ AC    ++   +Q+ A ++K    ++  
Sbjct: 76  QNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVF 135

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A ID+++KC  +ED+  +FE +   +    + +++ + +    E  L LF       
Sbjct: 136 VGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMG 195

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   +F +S V+ +   +  +  G Q H++  ++GF  N  VAS+L++MYAK GSI+ + 
Sbjct: 196 LENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAY 255

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  ++K+++V WN I+ G  ++  ++E +++FEE+ + G+ PD +T  AVL AC + G
Sbjct: 256 VLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVG 315

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VDKG   F  M  E+ V P   HY+C++D+L + G + +A ++ + MPF    S+W S+
Sbjct: 316 LVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSL 375

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +  I+G+++L E  A+ + +++      Y LL   YA   +WE   + +K ++ + I 
Sbjct: 376 LASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEIL 435

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           K  G SWI IK++++TF AGE  H     IYL L  L  EM
Sbjct: 436 KERGKSWIEIKDKVHTFMAGERTHPRITDIYLELNNLLEEM 476



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 205/437 (46%), Gaps = 48/437 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   +     K  HG + +LG    T   N  +++YS+ G      ++FDEIP+++
Sbjct: 4   LLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERS 63

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SWNI                               MI      G  + A+++F +MQ 
Sbjct: 64  MVSWNI-------------------------------MIGTCVQNGEEEKAIDIFLEMQR 92

Query: 141 QGVRPSGFTFSILLSTVSSACHGK-------QIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           +G   S FT    +S+V  AC  K       Q+H   I++ +  ++V +G +LID+Y K 
Sbjct: 93  EGSPCSEFT----VSSVVCACAAKGDVFFCRQLHAFAIKAVVD-ADVFVGTALIDVYAKC 147

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  VF  M E + ++W+S+++G   +   E  L  F   +  G   +++ IS VI
Sbjct: 148 GSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVI 207

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  L  L +G+QV A+  + GF  N+ V SA +D+++KC  +E++  LF  +++ +  
Sbjct: 208 RACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVV 267

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG-SQFHSM 371
           + N +IS + ++      + LF+ M +  ++P E T   VLS+ + +  V+ G S F  M
Sbjct: 268 LWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLM 327

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAE 430
             +     N +  S ++++  + G +  + E+  K+      S W +++     +G    
Sbjct: 328 TREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLEL 387

Query: 431 TLDVFEELLEEGLPPDR 447
                + L E  + PDR
Sbjct: 388 AEIAAKNLFE--MEPDR 402



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 141/297 (47%), Gaps = 44/297 (14%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C +     F + +H    K   +A  ++G   +D+Y++ G+ +D   +F+ +P+
Sbjct: 103 SSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPE 162

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N ++                               W+S+++G+      +  L +F++ 
Sbjct: 163 RNDVT-------------------------------WSSIVAGFVQNELYEEGLVLFARG 191

Query: 139 QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +  G+  + F    ++S+V  AC        G+Q+H  + R+G   +N V  ++L+DMY 
Sbjct: 192 KEMGLENNQF----MISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFV-ASALVDMYA 246

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K G +  A+ +F N+E+ +++ WN++ISG          ++ F  M+ +G  PDE T   
Sbjct: 247 KCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVA 306

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           V++AC  +  +DKG+  F L  +   +S N +  S  +D+  +   + ++  L  ++
Sbjct: 307 VLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKM 363



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C    +    + +H  + + GF  + ++ +  +D+Y++ G+ ++   LF  I +
Sbjct: 204 SSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEK 263

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN + WN                               ++ISG+A    S   + +F +M
Sbjct: 264 KNVVLWN-------------------------------AIISGFAKHACSSEVMNLFEEM 292

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G++P   T+  +LS    V     G+     M R      NV+  + ++D+ G+ G+
Sbjct: 293 QQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGL 352

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGCFNSGYGELA 230
           ++ A  +   M      S W SL++ C   G  ELA
Sbjct: 353 VHEAHELMTKMPFAATASMWGSLLASCRIHGNLELA 388


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/573 (30%), Positives = 308/573 (53%), Gaps = 14/573 (2%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CL+ +SF+  K  +  L K GF     + ++ L   +     D+  ++  +I +      
Sbjct: 130 CLNNESFEVIK-FYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFD- 187

Query: 85  NICLRGLL----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N+ L GLL    K   + ++ KVF++I   +VV W SMI+GY      +  L +F++M+ 
Sbjct: 188 NVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRE 247

Query: 141 QGVRPSGFTFSILLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V  + +T+  L+   +   A H GK  HG +I+SG+ LS+ ++  SL+DMY K G + 
Sbjct: 248 NSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLV-TSLLDMYVKCGDIS 306

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF     +D++ W ++I G  ++G    AL  F  M   G  P+  TI+ V++ C 
Sbjct: 307 NARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCG 366

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            + NL+ G+ +  LS+KVG    ++  +A + +++KC +  D+  +FE     D    N 
Sbjct: 367 LVGNLELGRSIHGLSIKVGIWDTNVA-NALVHMYAKCYQNRDAKYVFEMESEKDIVAWNS 425

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +IS + + G    AL LF  M  E + P   T++ + S+   +  +  GS  H+ ++K G
Sbjct: 426 IISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLG 485

Query: 377 F--DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           F   S+  V ++L++ YAK G  +S+  IF  +++++ ++W+ ++ G  + G    +L++
Sbjct: 486 FLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLEL 545

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FEE+L++   P+  T  +VL AC++ G V++G   FS+M ++Y   P  +HY C++D+L 
Sbjct: 546 FEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLA 605

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A+DI   MP QP    + + L    ++    L E V ++M+DL       Y L
Sbjct: 606 RAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVL 665

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587
           ++  YA  GRW     V+ +M++ G++K+ G S
Sbjct: 666 VSNLYASDGRWSQAKEVRNLMKQRGLSKIAGHS 698



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 206/434 (47%), Gaps = 43/434 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C   ++    K  HG L K G    + L    LD+Y + G                
Sbjct: 260 LVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCG---------------- 303

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          ++  A +VF+E    D+V W +MI GY   G  + AL +F KM  
Sbjct: 304 ---------------DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSG 348

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P+  T + +LS    V +   G+ IHG  I+ G+  +NV   N+L+ MY K     
Sbjct: 349 VGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNV--ANALVHMYAKCYQNR 406

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF    E DI++WNS+ISG   +G    AL  F+ M      P+  T++ + +AC 
Sbjct: 407 DAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACA 466

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVL--SATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L +L  G  + A SVK+GFL++S V   +A +D ++KC   E +  +F+ ++  +    
Sbjct: 467 SLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITW 526

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAI 373
           + MI  YG+ G  + +LELF+ ML++  +P E T + VLS+      V  G + F SM  
Sbjct: 527 SAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYK 586

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETL 432
              F  +    + +++M A+ G ++ + +I  K+  + D+  +   + G   + R     
Sbjct: 587 DYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGE 646

Query: 433 DVFEELLEEGLPPD 446
            V +++L+  L PD
Sbjct: 647 IVIKKMLD--LHPD 658



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 17/183 (9%)

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           +D+ S+C++LE  V + + L     AV+ +   T+           + +L L ED   + 
Sbjct: 4   VDVESECSKLEIDVVVMDYLS----AVMRMRCFTF---------TTIQELNLPEDNDESS 50

Query: 348 FTLS----CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
              +    C L       ++   Q H +   +G   +  +A+ L+ +Y   G    +  +
Sbjct: 51  LNYAASRPCFLLLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLV 110

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++ + D   W  I+     N  + E +  ++ L++ G   D I  +  L AC     +
Sbjct: 111 FDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDL 170

Query: 464 DKG 466
           D G
Sbjct: 171 DNG 173


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 163/533 (30%), Positives = 275/533 (51%), Gaps = 21/533 (3%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           ++  A +VFD   E D VSWN+++SGY   G  D  L +F+ M+  G+  + F     L 
Sbjct: 164 DMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFA----LG 219

Query: 156 TVSSACHGKQ---------IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           +V   C G           +HG ++++G   S+V L ++++ MY K G L  A  +F ++
Sbjct: 220 SVIKCCAGSDDPVMDIAAAVHGCVVKAGFD-SDVFLASAMVGMYAKKGALSEAVALFKSV 278

Query: 207 EELDIISWNSLISG------CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            + +++ +N++I+G         +     AL  +  ++  G  P E+T S VI AC    
Sbjct: 279 LDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAG 338

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           +++ GKQ+    +K  F  +  + SA IDL+     +ED  R F  + + D      MIS
Sbjct: 339 DIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMIS 398

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDS 379
              +    E AL LF  +L   ++P  FT+S V+++     V   G Q    A KSGF  
Sbjct: 399 GCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGR 458

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
              + +S + MYA++G + ++   F +++  D+VSW+ ++    Q+G A + L  F E++
Sbjct: 459 FTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMV 518

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
           +  + P+ IT   VL AC++GG VD+G+  +  MKEEY + P  +H  C++DLL +AG+L
Sbjct: 519 DAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRL 578

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
             A        F     IW S+L +  I+ D++  + VA+R+M+LQ  S   Y  L   Y
Sbjct: 579 ADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIY 638

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
              G      +++ VM++ G+ K  G SWI +++ +++F AG+  H     IY
Sbjct: 639 LDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIY 691



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 187/371 (50%), Gaps = 14/371 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSILLSTVS 158
           A ++ DE+P  + VS+N +I  Y+  G  + +LE F++ +   GVR   FT++  L+  S
Sbjct: 66  ARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACS 125

Query: 159 SACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
            A     GK +H   +  G++   V + NSL+ MY + G +  A  VF   +E D +SWN
Sbjct: 126 RAGRLREGKAVHALSVLEGIA-GGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWN 184

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN--LDKGKQVFALSV 273
           +L+SG   +G  +  L  F  MR SG   + + +  VI  C    +  +D    V    V
Sbjct: 185 ALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVV 244

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG----- 328
           K GF S+  + SA + +++K   L ++V LF+ +   +  V N MI+   R         
Sbjct: 245 KAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDV 304

Query: 329 -EVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASS 386
              AL L+  +    + PTEFT S V+ +  +   +E G Q H   +K  F  +  + S+
Sbjct: 305 LREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSA 364

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+++Y  +G ++     F  + K+D+V+W  ++ G  QN      L +F ELL  GL PD
Sbjct: 365 LIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPD 424

Query: 447 RITLAAVLLAC 457
             T+++V+ AC
Sbjct: 425 PFTISSVMNAC 435



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 165/333 (49%), Gaps = 37/333 (11%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
            D A  +HG + K GF++  +L +  + +Y++ G   + + LF  +   N + +N  + G
Sbjct: 233 MDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAG 292

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           L + D       V  E                        AL ++S++Q +G+ P+ FTF
Sbjct: 293 LCR-DEAAVGTDVLRE------------------------ALSLYSEVQSRGMEPTEFTF 327

Query: 151 SILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
               S+V  AC+       GKQIHG +++      + + G++LID+Y   G +   F  F
Sbjct: 328 ----SSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFI-GSALIDLYLNSGCMEDGFRCF 382

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
            ++ + D+++W ++ISGC  +   E AL  F+ +  +G  PD +TIS V+NAC  L    
Sbjct: 383 TSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVAR 442

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+Q+   + K GF   + + ++ I ++++   +  +VR F++++  D    + +IS++ 
Sbjct: 443 TGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHA 502

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           ++G    AL  F  M+   + P E T   VL++
Sbjct: 503 QHGCARDALRFFNEMVDAKVVPNEITFLGVLTA 535



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 181/370 (48%), Gaps = 16/370 (4%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           L + S+  H   +H  ++R+  S S + L N+L+  Y +LG   +A  +   M   + +S
Sbjct: 24  LRSCSAPRHAAAVHAHIVRAHPSPS-LFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVS 80

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +N LI     +G  E +L+ F   R S G   D +T +  + AC++   L +GK V ALS
Sbjct: 81  FNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALS 140

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V  G      V ++ + ++++C  +  + ++F+  D  D    N ++S Y R G  +  L
Sbjct: 141 VLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDML 200

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP---IPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            +F +M R  I    F L  V+        P ++  +  H   +K+GFDS+  +AS+++ 
Sbjct: 201 RVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVG 260

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA------ETLDVFEELLEEGL 443
           MYAK G++  +  +F  +   ++V +N ++ GL ++  A       E L ++ E+   G+
Sbjct: 261 MYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGM 320

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-ACIIDLLCQAGQLGKA 502
            P   T ++V+ ACN  G ++ G  +   + +      G++   + +IDL   +G +   
Sbjct: 321 EPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKH--CFQGDDFIGSALIDLYLNSGCMEDG 378

Query: 503 IDITSTMPFQ 512
               +++P Q
Sbjct: 379 FRCFTSVPKQ 388



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 36/286 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C      +F K IHG + K  F    ++G+  +DLY   G  +D  + F  +P+
Sbjct: 328 SSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPK 387

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++W   + G ++++  + AL +F E+                               
Sbjct: 388 QDVVTWTAMISGCVQNELFERALTLFHELLGA---------------------------- 419

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  FT S +++  +S   A  G+QI     +SG       +GNS I MY + G 
Sbjct: 420 ---GLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFG-RFTAMGNSCIHMYARSGD 475

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           ++ A   F  ME  DI+SW+++IS     G    AL  F  M  +   P+E T   V+ A
Sbjct: 476 VHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTA 535

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDS 300
           C+    +D+G + +    +   LS +I   +  +DL  +  RL D+
Sbjct: 536 CSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADA 581


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 173/546 (31%), Positives = 300/546 (54%), Gaps = 34/546 (6%)

Query: 100 ALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQL----QGVRPSGF---TF 150
           A +VFDE+PE   DVVSW ++IS Y+S G  D A + F +M+      G    G    + 
Sbjct: 106 AAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSL 165

Query: 151 SILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF- 203
             L+S  +  C       G  +HG +++ G  +S   LGNS++ MY     +  A+ VF 
Sbjct: 166 GALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTH-LGNSMVHMYSACKDVGGAWRVFN 224

Query: 204 -LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS---PDEYTISIVINACTKL 259
            + +E+ D++SWNSLISG   +G  E AL  F  M   G S   P+  T+  ++ +C +L
Sbjct: 225 GIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAEL 284

Query: 260 RNLDKGKQVFA-LSVKVGFL---SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
             ++    V   +S +   L    + +VL+A +D+ ++C  L  +  +F+ ++  +    
Sbjct: 285 GCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCW 344

Query: 316 NVMISTYGRYGFGEVALELFQLMLRE------DIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
           + MI+ Y +    E AL LF+ ML E      +++P   TL  V+++   +      S  
Sbjct: 345 SAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMI 404

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNG 426
           H  A+ +G D +A +AS+L++M AK G I+   ++F ++D+  R +VSW++++     +G
Sbjct: 405 HKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHG 464

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
                L++F E+   G  P+ IT  +VL AC++ G V++G   F++M+++YG+ P  +HY
Sbjct: 465 EGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHY 524

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC++DLL +AG L +A ++   MP +   ++W S+L A  ++G+ KL E V ++++ L  
Sbjct: 525 ACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDS 584

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            S   + LL   Y   GRW+ +VR++  +R++G+ K+ G S+I I N +Y+F A +  H 
Sbjct: 585 NSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHP 644

Query: 607 GGQKIY 612
             + IY
Sbjct: 645 ESEMIY 650



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 220/463 (47%), Gaps = 45/463 (9%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---G 163
           I   D   WNS+I+  A+      AL  F++MQ   V  + FTF  LL   ++       
Sbjct: 13  ISHKDTFHWNSLIAKNAT-QNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDIISWNSLISGC 221
            Q+H  + R GL+ ++     +L+D YGK G  YYA  VF  M E  +D++SW +LIS  
Sbjct: 72  LQVHAYLTRLGLA-ADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 222 FNSGYGELALDQFYSMRY-SGYSPDE------YTISIVINACT---KLRNLDKGKQVFAL 271
            ++G  + A   F  MR+  G+   E       ++  +++AC        L +G  V  L
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE--QLDRWDYAVINVMISTYGRYGFGE 329
            VK GF  ++ + ++ + ++S C  +  + R+F    +++ D    N +IS +   G  E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 330 VALELFQLMLRED---IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS-----N 380
            AL  F+ M+ E    + P   T+  +L S   +  VE  S  H   I S   S     +
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEY-ISSRHSSLLVAKD 309

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            VV ++L++M+A+ G++  + EIF  ++ +++V W+ ++ G  Q     E L +F ++L 
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 441 EG------LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA----CII 490
           EG      + P+ +TL +V+ AC+  G         ++M  +Y V  G +  A     +I
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRS-----ASMIHKYAVATGLDQDARIASALI 424

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSI-WESILRASAIYGDVK 532
           D+  + G +     + S M       + W S++ A  I+G+ K
Sbjct: 425 DMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGK 467



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 13/220 (5%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG------VRPS 146
           +  NL  A ++FD +   +VV W++MI+GY      + AL +F +M ++G      V+P+
Sbjct: 322 RCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPN 381

Query: 147 GFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   +++  S   ++     IH   + +GL   +  + ++LIDM  K G + +   VF
Sbjct: 382 AVTLVSVIAACSRLGASRSASMIHKYAVATGLD-QDARIASALIDMCAKCGDIEHGRQVF 440

Query: 204 LNMEE--LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
             M+E    ++SW+S+I      G G+ AL+ F  MR  GY P+E T   V++AC+    
Sbjct: 441 SEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGL 500

Query: 262 LDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           +++GK  F ++    G        +  +DL  +   L+++
Sbjct: 501 VEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEA 540


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 164/529 (31%), Positives = 284/529 (53%), Gaps = 9/529 (1%)

Query: 108 PEPDVVSWNSMISGYASCGYS-DYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHG 163
           P P+  ++N MI    +  ++   AL +F +M    + P  FTF       + ++S  H 
Sbjct: 82  PHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHA 141

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
              H  + +  L  S+    +SLI  Y + G++  A  VF  +   D +SWNS+I+G   
Sbjct: 142 CAAHSLLFKLALH-SDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAK 200

Query: 224 SGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           +G    A++ F  M R  G+ PDE ++  ++ AC +L +L+ G+ V    V+ G   NS 
Sbjct: 201 AGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSY 260

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           + SA I +++KC  LE + R+F+ +   D    N +IS Y + G  + A+ LF  M  + 
Sbjct: 261 IGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDC 320

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   + TL+ VLS+   I  ++ G Q    A + GF  +  VA++L++MYAK+GS+D++ 
Sbjct: 321 VTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQ 380

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAAVLLACNY 459
            +F  + +++  SWN ++  L  +G+A E L +F+ + +EG    P+ IT   +L AC +
Sbjct: 381 RVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVH 440

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
            G VD+G  +F  M   +G++P  EHY+C++DLL +AG L +A D+   MP +P      
Sbjct: 441 AGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLG 500

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           ++L A     +V + E V   ++++   +   Y + ++ YA    WE   R++ +MR+ G
Sbjct: 501 ALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKG 560

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           I K  GCSWI ++N ++ F+AG+        +  ++ LL  E++ EG V
Sbjct: 561 ITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIIDLLYEELKREGYV 609



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 38/293 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C      +  + + G + + G   ++Y+G+  + +Y++ G  +   ++FD +  ++
Sbjct: 230 LLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARD 289

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            I+WN                               ++ISGYA  G +D A+ +F  M+ 
Sbjct: 290 VITWN-------------------------------AVISGYAQNGMADEAILLFHGMKE 318

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V  +  T + +LS   T+ +   GKQI     + G    ++ +  +LIDMY K G L 
Sbjct: 319 DCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQ-HDIFVATALIDMYAKSGSLD 377

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM--RYSGYSPDEYTISIVINA 255
            A  VF +M + +  SWN++IS     G  + AL  F  M     G  P++ T   +++A
Sbjct: 378 NAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSA 437

Query: 256 CTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C     +D+G ++F  +S   G +      S  +DL ++   L ++  L  ++
Sbjct: 438 CVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKM 490



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 124/296 (41%), Gaps = 68/296 (22%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
            NK +L+    ++  C +  + D  K I  +  + GF    ++    +D+Y++ G+ D+ 
Sbjct: 323 ANKITLT---AVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNA 379

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
            ++F ++PQKN  SW                               N+MIS  A+ G + 
Sbjct: 380 QRVFKDMPQKNEASW-------------------------------NAMISALAAHGKAK 408

Query: 130 YALEMFSKMQLQ--GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
            AL +F  M  +  G RP+  TF  LL    SAC    +H  ++  G           L 
Sbjct: 409 EALSLFQHMSDEGGGARPNDITFVGLL----SAC----VHAGLVDEGY---------RLF 451

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DM   L      FG+   +E      ++ ++     +G+   A D    M      PD+ 
Sbjct: 452 DMMSTL------FGLVPKIEH-----YSCMVDLLARAGHLYEAWDLIRKM---PEKPDKV 497

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           T+  ++ AC   +N+D G++V  + ++V   SNS     +  +++  N  EDS R+
Sbjct: 498 TLGALLGACRSKKNVDIGERVMRMILEVD-PSNSGNYIISSKIYANLNMWEDSARM 552


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 167/565 (29%), Positives = 297/565 (52%), Gaps = 21/565 (3%)

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           D   LFDE+P ++ +++N+ +        +  A   FD  PE D VSWN M++ Y   G 
Sbjct: 118 DARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGR 177

Query: 128 SDYALEMF-SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSL 186
            + A  +F S+ +   +     +++ L+S       GK      +   +   +VV  N +
Sbjct: 178 VEEARGLFNSRTEWDAI-----SWNALMSGYVQ--WGKMSEARELFDRMPGRDVVSWNIM 230

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           +  Y + G +  A  +F      D+ +W +++SG   +G  E A   F +M      P+ 
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PER 284

Query: 247 YTIS--IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
             +S   ++ A  + R +D+ K++F +       S + +L+     +++   LE++  +F
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG----YAQAGMLEEAKAVF 340

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVE 363
           + + + D      M++ Y + G  E  L+LF  M R          +CVLS+   I  +E
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
            G Q H   I++G+     V ++L+ MY K G+++ +   F ++++RD+VSWNT++ G  
Sbjct: 401 CGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           ++G   E L++F+ +      PD ITL  VL AC++ G V+KG+  F +M  ++GV    
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           EHY C+IDLL +AG+L +A D+   MPF+P  ++W ++L AS I+ + +L  + AE++ +
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           L+  +   Y LL+  YA  G+W    +++ +M + G+ KV G SWI ++N+++TF+AG+ 
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDC 640

Query: 604 QHHGGQKIYLVLRLLTWEMEDEGCV 628
            H   +KIY  L  L   M+  G V
Sbjct: 641 VHPEKEKIYAFLEDLDMRMKKAGYV 665



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 182/412 (44%), Gaps = 36/412 (8%)

Query: 40  HLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99
           H F L         N  L  Y R G  ++   LF+   + + ISWN  + G ++   +  
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSE 211

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS- 158
           A ++FD +P  DVVSWN M+SGYA  G    A  +F    ++ V    FT++ ++S  + 
Sbjct: 212 ARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQ 267

Query: 159 ----------------------SACHGKQIHGSMIRSGLSL------SNVVLGNSLIDMY 190
                                 +A     I   M+     L       NV   N+++  Y
Sbjct: 268 NGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGY 327

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G+L  A  VF  M + D +SW ++++     G  E  L  F  M   G   +    +
Sbjct: 328 AQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFA 387

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V++ C  +  L+ G Q+    ++ G+     V +A + ++ KC  +ED+   FE+++  
Sbjct: 388 CVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQF 368
           D    N MI+ Y R+GFG+ ALE+F +M     +P + TL  VL++      VE G S F
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
           +SM    G  +     + ++++  + G +  + ++   +  + D   W  ++
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 54/221 (24%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           VN+++ + C  ++  C    + +    +HG L + G+    ++GN  L +Y + G  +D 
Sbjct: 381 VNRSAFA-C--VLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
              F+E+ +++ +SWN                               +MI+GYA  G+  
Sbjct: 438 RNAFEEMEERDVVSWN-------------------------------TMIAGYARHGFGK 466

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LS 178
            ALE+F  M+    +P   T   +L+  S        H  ++  G+S            +
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACS--------HSGLVEKGISYFYSMHHDFGVTA 518

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
                  +ID+ G+ G L  A  +  +M  E D   W +L+
Sbjct: 519 KPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559


>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 172/630 (27%), Positives = 309/630 (49%), Gaps = 82/630 (13%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +++  C + +  +  K IH  + + G + +  L N  L  + + G      + F  + ++
Sbjct: 185 KILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDER 244

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPE------------------------------ 109
           + +SWN+ + G  +  N D A ++ D +                                
Sbjct: 245 DGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLK 304

Query: 110 ---------PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
                    PDV +W SMISG++       AL+ F KM L GV P+    +I +++ +SA
Sbjct: 305 KKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPN----TITIASATSA 360

Query: 161 C-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           C       +G +IH   I+ G++   +V GNSLIDMY K G L  A  VF  + E D+ +
Sbjct: 361 CASLKSLQNGLEIHCFAIKMGIARETLV-GNSLIDMYSKCGKLEAARHVFDTILEKDVYT 419

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           WNS+I G   +GYG  A + F  +R S   P+  T + +I+ C +  + D+   +F +  
Sbjct: 420 WNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIME 479

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K G +                              + + A  N +I+ Y + G    AL 
Sbjct: 480 KDGGV------------------------------KRNTASWNSLIAGYHQLGEKNKALA 509

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG-SQFHSMAIKSGFDSNAVVASSLMEMYA 392
           +F+ M   +  P   T+  +L +      E    + H   ++   +S   VA+SL++ YA
Sbjct: 510 IFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYA 569

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K+G+I  S  +F  +  +D+++WN+I+ G   +G +     +F+++   G+ P+R TLA+
Sbjct: 570 KSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLAS 629

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           ++ A    G VDKG  VFS++ EE+ ++P  +HY  ++DL  ++G+L  AI+    MP +
Sbjct: 630 IIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIE 689

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P  SIW S+L A   +G++ L    A+R+ +L+  + + Y LL QAYA+ G++E  ++V+
Sbjct: 690 PDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVR 749

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           K+ +++ + K T   W+ ++N+++ F  G+
Sbjct: 750 KLGKESAMKKCTAQCWVEVRNKVHLFVTGD 779



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 208/448 (46%), Gaps = 42/448 (9%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           L  A KVFD + E ++ +W++MI  Y+        +E+F  M   GV P  F F  +L  
Sbjct: 130 LKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQA 189

Query: 157 VSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             + C      K IH  +IR GLS   + L NS++  + K G L  A   F NM+E D +
Sbjct: 190 CGN-CEDLETVKLIHSLVIRCGLSCY-MRLSNSILTAFVKCGKLSLARKFFGNMDERDGV 247

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SWN +I+G    G G+ A     +M   G+ P   T +I+I + ++L + D         
Sbjct: 248 SWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCD--------- 298

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
                          IDL  K     +SV L   +  W       MIS + +      AL
Sbjct: 299 -------------LVIDLKKKM----ESVGLAPDVYTW-----TSMISGFSQSSRISQAL 336

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           + F+ M+   + P   T++   S+   +  +++G + H  AIK G     +V +SL++MY
Sbjct: 337 DFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMY 396

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           +K G ++++  +F  + ++D+ +WN+++ G  Q G   +  ++F  L E  + P+ +T  
Sbjct: 397 SKCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWN 456

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP- 510
           A++  C   G  D+ M +F  M+++ GV      +  +I    Q G+  KA+ I   M  
Sbjct: 457 AMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQS 516

Query: 511 --FQPGCSIWESILRASA-IYGDVKLTE 535
             F P      SIL A A +  + K+ E
Sbjct: 517 LNFSPNSVTILSILPACANVMAEKKIKE 544



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 106/473 (22%), Positives = 201/473 (42%), Gaps = 60/473 (12%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGL-SLSNVVLGNSL 186
           A+     +  +G + S  T+  LL T   V S   G+++H   +R GL    N  +   L
Sbjct: 64  AITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH---VRMGLVHRVNPFVETKL 120

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246
           + MY K G L  A  VF  M+E ++ +W+++I         +  ++ F+ M   G  PD 
Sbjct: 121 VSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDA 180

Query: 247 YTISIVINACTKLRNLDKGKQVFALSVKVGF-----LSNSIVLSATIDLFSKCNRLEDSV 301
           +    ++ AC    +L+  K + +L ++ G      LSNSI+ +     F KC +L  + 
Sbjct: 181 FLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTA-----FVKCGKLSLAR 235

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP 361
           + F  +D  D    NVMI+ Y + G G+ A  L   M  +  +P   T + +++S     
Sbjct: 236 KFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIAS----- 290

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK----RDLVSWNT 417
                                        Y++ G  D   ++  K++      D+ +W +
Sbjct: 291 -----------------------------YSQLGDCDLVIDLKKKMESVGLAPDVYTWTS 321

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ G +Q+ R ++ LD F++++  G+ P+ IT+A+   AC     +  G+ +      + 
Sbjct: 322 MISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEI-HCFAIKM 380

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA--SAIYGDVKLTE 535
           G+         +ID+  + G+L  A  +  T+  +     W S++     A YG  K  E
Sbjct: 381 GIARETLVGNSLIDMYSKCGKLEAARHVFDTI-LEKDVYTWNSMIGGYCQAGYGG-KAYE 438

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
                     +P+ + ++ +       G  +  + + ++M K+G  K    SW
Sbjct: 439 LFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASW 491


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 174/618 (28%), Positives = 314/618 (50%), Gaps = 43/618 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C     +   + +H H+ + GF     + N  + +Y++ G   DV+          
Sbjct: 195 VLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCG---DVM---------- 241

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                              A KVFD +   D +SWN+MI+G+   G  +  LE+F  M  
Sbjct: 242 ------------------AARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLH 283

Query: 141 QGVRPSGFTF------SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
             V+P+  T       S LLS V+ A   K++HG  ++ G +  +V   NSLI MY  LG
Sbjct: 284 DEVQPNLMTITSVTVASGLLSDVTFA---KEMHGLAVKRGFA-GDVAFCNSLIQMYASLG 339

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
           ++  A  VF  M+  D ++W ++ISG   +G+ + AL+ +  M  +  SPD+ TI+  + 
Sbjct: 340 MMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALA 399

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           AC  L +LD G ++  L+   GF+S  +V +A +++++K  R++ ++ +F+ +   D   
Sbjct: 400 ACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVS 459

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAI 373
            + MI+ +        AL  F+ ML  D++P   T ++ + +      +  G + H+  +
Sbjct: 460 WSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHVL 518

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           + G +    + ++L+++Y K G    +   F     +D+VSWN ++ G   +G     L 
Sbjct: 519 RCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALS 578

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
            F ++++ G  PD +T  A+L AC+ GG V +G  +F +M E+Y ++P  +HYAC++DLL
Sbjct: 579 FFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLL 638

Query: 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553
            +AGQL +A +  + MP  P  ++W ++L    I+  V+L E  A+ ++ L+      + 
Sbjct: 639 SRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHV 698

Query: 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYL 613
           LL   YA    W+ + RV+K MR+ G++  +GCSW+ +K  ++ F   +  H   ++I  
Sbjct: 699 LLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINT 758

Query: 614 VLRLLTWEMEDEGCVYLE 631
           VL  +   M+  G   +E
Sbjct: 759 VLEGIYERMKASGYAPVE 776



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 224/426 (52%), Gaps = 15/426 (3%)

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  L  L++      A +VF ++PE DV SWN M+ GY   G  D AL+++ +M   GVR
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TF  +L +   V     G+++H  ++R G      VL N+L+ MY K G +  A  
Sbjct: 187 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVL-NALMTMYAKCGDVMAARK 245

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M  +D ISWN++I+G F +G     L+ F +M +    P+  TI+ V  A   L +
Sbjct: 246 VFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSD 305

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +   K++  L+VK GF  +    ++ I +++    +  +  +F ++D  D      MIS 
Sbjct: 306 VTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISG 365

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSN 380
           Y + GF + ALE++ LM   ++ P + T++  L++      ++ G + H +A   GF S 
Sbjct: 366 YEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISY 425

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            VV ++++EMYAK+  ID + E+F  + ++D+VSW++++ G   N R  E L  F  +L 
Sbjct: 426 IVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA 485

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EY-GVMPGEEHYACIIDLLCQA 496
           + + P+ +T  A L AC   G +  G  + + +     EY G +P       +IDL  + 
Sbjct: 486 D-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPN-----ALIDLYVKC 539

Query: 497 GQLGKA 502
           GQ G A
Sbjct: 540 GQTGYA 545



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 177/329 (53%), Gaps = 2/329 (0%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           LGN+++ M  + G  ++A+ VF  M E D+ SWN ++ G   SG  + ALD ++ M ++G
Sbjct: 125 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAG 184

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD YT   V+ +C  + +   G++V A  ++ GF     VL+A + +++KC  +  + 
Sbjct: 185 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAAR 244

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV-LSSIPIP 360
           ++F+ +   D    N MI+ +   G     LELF  ML ++++P   T++ V ++S  + 
Sbjct: 245 KVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLS 304

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            V    + H +A+K GF  +    +SL++MYA  G +  +  +F ++D RD ++W  ++ 
Sbjct: 305 DVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMIS 364

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  +NG   + L+V+  +    + PD IT+A+ L AC   G +D G+ +   + E  G +
Sbjct: 365 GYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHE-LAESKGFI 423

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTM 509
                   I+++  ++ ++ KAI++   M
Sbjct: 424 SYIVVTNAILEMYAKSKRIDKAIEVFKCM 452


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 286/536 (53%), Gaps = 12/536 (2%)

Query: 103 VFDEI-PEPDVVSWNSMISGYASCGYSDY--ALEMFSKMQLQGVRPSGFTFSILL---ST 156
           +F  I P P+  ++N M+    +  + DY   L ++ +M+   + P+ FTF  +    + 
Sbjct: 71  IFSHITPHPNDYAFNIMLRA-TTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACAN 129

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +      +  H  + + GL   +  + NS++ MY + G    A  VF  + E D++SWNS
Sbjct: 130 LEEIRMARLAHCEVFKLGLDNDHHTV-NSMVTMYFRCGENGVARKVFDEITEKDLVSWNS 188

Query: 217 LISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           L+SG    G+   A++ F  +R  SG+ PDE ++  V+ AC +L +L+ G+ V    V+ 
Sbjct: 189 LLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER 248

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G   NS + SA I ++SKC  L  S R+F+ +   D+   N  IS Y + G  + A+ LF
Sbjct: 249 GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLF 308

Query: 336 QLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M    + P + TL+ VLS+   I  ++ G Q    A   G   +  VA++L++MYAK 
Sbjct: 309 HSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKC 368

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAA 452
           GS++S+  +F  + +++  SWN ++  L  +G+A E L +FE + +EG    P+ IT  +
Sbjct: 369 GSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVS 428

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L AC + G VD+G  +F  M   +G++P  EHY+C++DLL +AG L +A D+   MP +
Sbjct: 429 LLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK 488

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P      ++  A     +V + E V + +++L   +   Y + ++ Y     W+   R++
Sbjct: 489 PDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMR 548

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            +MR+NG+ K  GCSWI + N++  F +G+        +  ++ LL  E++ EG V
Sbjct: 549 ALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYV 604



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 211/461 (45%), Gaps = 78/461 (16%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + +    A+  H  +FKLG +   +  N  + +Y R G +                  
Sbjct: 127 CANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENG----------------- 169

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GV 143
                          A KVFDEI E D+VSWNS++SGYA  G++  A+E+F +++ + G 
Sbjct: 170 --------------VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF 215

Query: 144 RPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            P   +    L +V  AC        G+ + G ++  G+ + N  +G++LI MY K G L
Sbjct: 216 EPDEMS----LVSVLGACGELGDLELGRWVEGFVVERGMKV-NSYIGSALISMYSKCGEL 270

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  M   D I+WN+ IS    +G  + A+  F+SM+ +G  P++ T++ V++AC
Sbjct: 271 VSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             +  LD GKQ+   +   G   +  V +A ID+++KC  LE + R+F  + R + A  N
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390

Query: 317 VMISTYGRYGFGEVALELFQLMLRE--DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374
            MIS    +G  + AL LF+ M  E    RP + T   +LS+            H+  + 
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC----------VHAGLVD 440

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G+         L +M +    +    E            ++ ++  L++ G   E  DV
Sbjct: 441 EGY--------RLFDMMSTLFGLVPKIE-----------HYSCMVDLLSRAGHLYEAWDV 481

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
            E++ E+   PD +TL A+  AC     VD G  V   + E
Sbjct: 482 IEKMPEK---PDNVTLGALHSACQRKKNVDIGERVIQMLLE 519



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 39/325 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      +  + + G + + G   ++Y+G+  + +YS+ G                    
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCG-------------------- 268

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L ++ ++FD +P  D ++WN+ IS YA  G +D A+ +F  M+  GV 
Sbjct: 269 -----------ELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + +LS  +S      GKQ+       GL   ++ +  +LIDMY K G L  A  
Sbjct: 318 PNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQ-HDIFVATALIDMYAKCGSLESAQR 376

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISIVINACTKL 259
           VF +M   +  SWN++IS   + G  + AL  F  M   G S  P++ T   +++AC   
Sbjct: 377 VFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHA 436

Query: 260 RNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINV 317
             +D+G ++F  +S   G +      S  +DL S+   L ++  + E++ ++ D   +  
Sbjct: 437 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGA 496

Query: 318 MISTYGRYGFGEVALELFQLMLRED 342
           + S   R    ++   + Q++L  D
Sbjct: 497 LHSACQRKKNVDIGERVIQMLLELD 521


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 160/570 (28%), Positives = 296/570 (51%), Gaps = 7/570 (1%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS--DNLDTALKVFDEIPEPDVVSWNS 117
           + + GT D + Q    +           L  LL+S   +L   L +FD +  P +  WN+
Sbjct: 15  FHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATKDLGYTLLLFDRLATPYIFLWNT 74

Query: 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK--QIHGSMIRSGL 175
           ++  +++       L  +S+++  GV P   TF +LL   S   +    Q +  +++ GL
Sbjct: 75  IVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVKFGL 134

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
                V  NSL+  +   G +  +  +F+   + D++SW +LI+GC  +G    AL+ F 
Sbjct: 135 DFDAFV-QNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFV 193

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSNSIVLSATIDLFSKC 294
            MR SG   DE T+  V+ A   LR++  G+ V    V+ G  + +  V SA +D++SKC
Sbjct: 194 EMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKC 253

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
              +D+V++F ++   +      +I+ Y +    + AL++FQ M+ E I P + T++  L
Sbjct: 254 GYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSAL 313

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           ++   +  ++ G   H    +S    N+ + ++L++MY+K G +D +  +F KL  +D+ 
Sbjct: 314 TACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVY 373

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            W  ++ GL   G A  +L++F +++   + P+ +T   VL AC +GG VD+G+ +F  M
Sbjct: 374 PWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLM 433

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
             +Y + P  +HY C++DLL +AG+L +AI    +MP +P   +W ++     I+   +L
Sbjct: 434 ICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFEL 493

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E++   ++ LQ      Y LL   Y+   +WEA   V+++M+  G++K   CSWI +  
Sbjct: 494 GEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNG 553

Query: 594 RIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            I+ F A +  H     +Y++L  +T +++
Sbjct: 554 VIHEFIAFDKSHIESINVYMMLGSVTAQLK 583



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 37/280 (13%)

Query: 33  FAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           F + +HG   + G      Y+G+  +D+YS+ G  DD +++F+E+P +N +SW   + G 
Sbjct: 222 FGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGY 281

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           ++ +    ALKVF E                               M ++G+ P+  T +
Sbjct: 282 VQCNRYKEALKVFQE-------------------------------MIIEGIEPNQSTVT 310

Query: 152 ILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
             L+  +   S   G+ +H  + RS L L N  LG +L+DMY K G +  A  VF  +  
Sbjct: 311 SALTACAQLGSLDQGRWLHEYVDRSKLGL-NSKLGTALVDMYSKCGCVDEALLVFEKLPA 369

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D+  W ++I+G    G    +L+ F  M  S   P+  T   V++AC     +D+G ++
Sbjct: 370 KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLEL 429

Query: 269 FALSV-KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           F L +       N       +DL  +  RLE++++  E +
Sbjct: 430 FRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM 469



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 61/274 (22%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           S  +  +  C    S D  + +H ++ +     ++ LG   +D+YS+ G  D+ L +F++
Sbjct: 307 STVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEK 366

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +P K+   W                                +MI+G A  G +  +L +F
Sbjct: 367 LPAKDVYPW-------------------------------TAMINGLAMRGDALSSLNLF 395

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL-----------SNVVLGN 184
           S+M    V+P+G TF  +L    SAC     HG ++  GL L            NV    
Sbjct: 396 SQMIRSRVQPNGVTFLGVL----SAC----AHGGLVDEGLELFRLMICDYRLEPNVDHYG 447

Query: 185 SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA---------LDQF 234
            ++D+ G+ G L  A     +M  E     W +L SGC      EL          L   
Sbjct: 448 CMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPH 507

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           +S RY   + + Y+      A   +R L KGK V
Sbjct: 508 HSGRYILLA-NLYSRCQKWEAAANVRRLMKGKGV 540


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 190/698 (27%), Positives = 324/698 (46%), Gaps = 108/698 (15%)

Query: 8    AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSD 67
            + V   +L  C++++D  L  +       IHG L K GF+   YL    ++ Y R    +
Sbjct: 674  SEVYSVALKTCTRVMDIWLGME-------IHGCLIKRGFDLDVYLRCALMNFYGRCWGLE 726

Query: 68   DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
               Q+F E+P    + WN  +   L+S+ L                              
Sbjct: 727  KANQVFHEMPNPEALLWNEAIILNLQSEKLQK---------------------------- 758

Query: 128  SDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGN 184
                +E+F KMQ   ++    T   +L     + +    KQIHG + R GL  S+V L N
Sbjct: 759  ---GVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLD-SDVSLCN 814

Query: 185  SLIDMYGKLGVLYYAFGVFLNME-----------------------------------EL 209
             LI MY K G L  A  VF +ME                                   + 
Sbjct: 815  PLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKP 874

Query: 210  DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
            DI++WN L+SG F  GY E  L+    M+  G+ P+  +++ V+ A ++L  L+ GK+  
Sbjct: 875  DIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETH 934

Query: 270  ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
               ++ GF  +  V ++ ID++ K + L  +  +F+ +   +    N ++S Y   G  E
Sbjct: 935  GYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 994

Query: 330  VALELFQLMLREDIRPTEFT------------------------LSCVLSS-IPIPPVEH 364
             AL L   M +E I+P   T                        ++C+L +   +  ++ 
Sbjct: 995  DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQK 1054

Query: 365  GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
            G + H ++I++GF  +  VA++L++MY+K+ S+ ++ ++F ++  + L SWN ++MG   
Sbjct: 1055 GKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAI 1114

Query: 425  NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
             G   E + VF E+ + G+ PD IT  A+L AC   G + +G   F +M  +Y ++P  E
Sbjct: 1115 FGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLE 1174

Query: 485  HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
            HY C++DLL +AG L +A D+  TMP +P  +IW ++L +  I+ ++   E  A+ +  L
Sbjct: 1175 HYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKL 1234

Query: 545  QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
            +  +   Y L+   Y++  RWE +  ++++M   G+      SWI I  R++ F++ E  
Sbjct: 1235 EPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKP 1294

Query: 605  HHGGQKIYLVLRLLTWEME------DEGCVYLECDKLD 636
            H    KIY  L  L  EM+      D  CVY   D+++
Sbjct: 1295 HPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVE 1332



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 202/445 (45%), Gaps = 53/445 (11%)

Query: 75   EIPQKNCISWN--ICLRGLLKS-----DNLDTALKVFDEIPEPDVVSWNSMISGY-ASCG 126
            ++PQK    WN     + L+ S     D    A+  +  +P  + + WNS +  + +S G
Sbjct: 599  KLPQK----WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPR-NYLKWNSFVEEFKSSAG 653

Query: 127  YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLG 183
                 LE+F ++  +GV      +S+ L T +       G +IHG +I+ G  L +V L 
Sbjct: 654  SLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDL-DVYLR 712

Query: 184  NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
             +L++ YG+   L  A  VF  M   + + WN  I     S   +  ++ F  M++S   
Sbjct: 713  CALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLK 772

Query: 244  PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
             +  TI  V+ AC K+  L+  KQ+     + G  S+  + +  I ++SK  +LE + R+
Sbjct: 773  AETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRV 832

Query: 304  FEQLDRWDYAVINVMISTYGR-----------------------------------YGFG 328
            F+ ++  + +  N MIS+Y                                     +G+ 
Sbjct: 833  FDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK 892

Query: 329  EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            E  L + Q M  E  +P   +++ VL +I  +  +  G + H   +++GFD +  V +SL
Sbjct: 893  EEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 952

Query: 388  MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
            ++MY K  S+ S+  +F  +  R++ +WN+++ G +  G   + L +  ++ +EG+ PD 
Sbjct: 953  IDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 1012

Query: 448  ITLAAVLLACNYGGFVDKGMLVFSA 472
            +T   ++      G   K  +  SA
Sbjct: 1013 VTWNGMISGYAMWGCARKAFMPNSA 1037


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 288/539 (53%), Gaps = 21/539 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +  ++  A +VFD   E D VSWNS++SGY   G  +  L +F+ M+   +  + F    
Sbjct: 161 RCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFA--- 217

Query: 153 LLSTVSSACHG---------KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            L +V   C G         + +HG ++++GL  +++ L ++++DMY K G L  A  +F
Sbjct: 218 -LGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLD-TDLFLASAMVDMYAKRGALSEAVALF 275

Query: 204 LNMEELDIISWNSLISG-CFNSG--YGEL---ALDQFYSMRYSGYSPDEYTISIVINACT 257
            ++ + +++ +N++I+G C +    + E+   AL  +  ++  G  P E+T S VI AC 
Sbjct: 276 KSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACN 335

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +++ GKQ+    +K  F  +  + SA IDL+     +ED  R F  + + D      
Sbjct: 336 LAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTA 395

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           MIS   +    E AL LF  +L   ++P  FT+S V+++   +  V  G Q    A KSG
Sbjct: 396 MISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSG 455

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           FD    + +S + MYA++G+++++ + F +++  D+VSW+ I+    Q+G A + L  F 
Sbjct: 456 FDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFN 515

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           E++   + P+ IT   VL AC++GG VD+G+  +  MK EYG+ P  +H  C++DLL +A
Sbjct: 516 EMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRA 575

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G+L  A        F     +W+S+L +  I+ D++  + VA+R+M+LQ  S   Y  L 
Sbjct: 576 GRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLY 635

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVL 615
             Y   G      +++ +M++ G+ K  G SWI +++ I++F AG+  H     IY  L
Sbjct: 636 NMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYTKL 694



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 228/520 (43%), Gaps = 53/520 (10%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S   A  +HGH+ +   +   +L N  L  Y R G  D                   
Sbjct: 22  SCASLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDT------------------ 63

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF-SKMQLQGVRP 145
                        A ++ DE+P  + VS+N +I  Y+  G ++ +LE F    +   V+ 
Sbjct: 64  -----------HQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKA 112

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
             FT++  L+  S A     GK +H   +  GL+   V + NSL+ MY + G +  A  V
Sbjct: 113 DRFTYAAALAACSRAGRLKEGKVVHALAVLEGLA-EGVFVSNSLVSMYARCGDMGEARRV 171

Query: 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262
           F   EE D +SWNSL+SG    G  E  L  F  MR      + + +  VI  C+     
Sbjct: 172 FDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGS 231

Query: 263 DKG--KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            +G  + V    VK G  ++  + SA +D+++K   L ++V LF+ +   +  V N MI+
Sbjct: 232 VRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIA 291

Query: 321 TYGRYGFG---EV---ALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAI 373
              R       EV   AL L+  +    + PTEFT S V+ +  +   +E G Q H   +
Sbjct: 292 GLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVL 351

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           K  F  +  + S+L+++Y  +  ++     F  + K+D+V+W  ++ G  QN      L 
Sbjct: 352 KHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALA 411

Query: 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI---- 489
           +F ELL  GL PD  T+++V+ AC     V  G        + +    G + +  +    
Sbjct: 412 LFHELLGVGLKPDPFTISSVMNACASLAVVRTG-----EQMQCFATKSGFDRFTAMGNSC 466

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           I +  ++G +  AI     M      S W +I+ + A +G
Sbjct: 467 IHMYARSGNVEAAIQRFQEMESHDVVS-WSAIISSHAQHG 505



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 161/330 (48%), Gaps = 23/330 (6%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV--LYYAFGVFLNMEELDI 211
           L + +S      +HG + R+  S S + L N+L+  Y +LG    + A  +   M   + 
Sbjct: 20  LRSCASLPQAAAVHGHIARAHPSPS-LFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNA 78

Query: 212 ISWNSLISGCFNSGYGELALDQF-YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +S+N LI     +G  E +L+ F ++ R +    D +T +  + AC++   L +GK V A
Sbjct: 79  VSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHA 138

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           L+V  G      V ++ + ++++C  + ++ R+F+  +  D    N ++S Y R G  E 
Sbjct: 139 LAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEE 198

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIP--------IPPVEHGSQFHSMAIKSGFDSNAV 382
            L +F LM R  +    F L  V+            I    HG       +K+G D++  
Sbjct: 199 MLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGC-----VVKAGLDTDLF 253

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA------ETLDVFE 436
           +AS++++MYAK G++  +  +F  +   ++V +N ++ GL ++  A       E L ++ 
Sbjct: 254 LASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYS 313

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           EL   G+ P   T ++V+ ACN  G ++ G
Sbjct: 314 ELQSRGMEPTEFTFSSVIRACNLAGDIEFG 343



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 36/286 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C      +F K IHG + K  F    ++G+  +DLY      +D  + F  +P+
Sbjct: 328 SSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPK 387

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++W   + G ++++  + AL +F E+                               
Sbjct: 388 QDVVTWTAMISGCVQNELFERALALFHELLGV---------------------------- 419

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++P  FT S +++  +S      G+Q+     +SG       +GNS I MY + G 
Sbjct: 420 ---GLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFD-RFTAMGNSCIHMYARSGN 475

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  ME  D++SW+++IS     G    AL  F  M  +   P+E T   V+ A
Sbjct: 476 VEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTA 535

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           C+    +D+G + +  + ++ G        +  +DL  +  RL D+
Sbjct: 536 CSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADA 581



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 51/215 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C S       + +     K GF+  T +GN C+ +Y+R G              
Sbjct: 429 SSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSG-------------- 474

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            N++ A++ F E+   DVVSW+++IS +A  G +  AL+ F++M
Sbjct: 475 -----------------NVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEM 517

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS-----------LSNVVLGNSLI 187
               V P+  TF  +L+  S        HG ++  GL               V     ++
Sbjct: 518 VGAKVVPNEITFLGVLTACS--------HGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVV 569

Query: 188 DMYGKLGVLYYAFGVFLN-MEELDIISWNSLISGC 221
           D+ G+ G L  A     + +   + + W SL+  C
Sbjct: 570 DLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSC 604


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 166/612 (27%), Positives = 310/612 (50%), Gaps = 76/612 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + IH  +F  G ++   L N  + +Y+RFG+  D  ++F  +  +               
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR--------------- 171

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                           D  SWN++I  ++  G    AL +F +M+   V+P+  T+  ++
Sbjct: 172 ----------------DETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVI 214

Query: 155 STVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S  S+      G++IH  ++ +G   +++V+  +LI+MYGK G  + A  VF  M++ D+
Sbjct: 215 SGFSTPEVLPEGRKIHAEIVANGFD-TDLVVATALINMYGKCGSSHEAREVFDKMKKRDM 273

Query: 212 ISWNSLISGCF--NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +SWN +I GC+  N  + E AL+ +  +   G+   + T   ++ AC+ ++ L +G+ V 
Sbjct: 274 VSWNVMI-GCYVLNGDFHE-ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVH 331

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF------------------------- 304
           +  ++ G  S   V +A +++++KC  LE++ ++F                         
Sbjct: 332 SHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGK 391

Query: 305 ---------EQLDRWDYAVINVMISTYGRYGFGEVALELFQLML-REDIRPTEFTLSCVL 354
                    ++L   D    N MI+TY + G    A+++F+ M     ++P   T   VL
Sbjct: 392 DARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVL 451

Query: 355 SSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
            +   +  +      H+   +S  +SN VV ++L+ MYA+ GS++ +  +F    ++ +V
Sbjct: 452 EACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVV 511

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           SW  ++   +Q GR AE LD+F+E+  EG+ PD +T  ++L  C +GG +++G   F+ M
Sbjct: 512 SWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDM 571

Query: 474 KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKL 533
            E + + P  +H+A ++DLL ++G+L  A ++  +MPF+P    W + L A  I+G ++L
Sbjct: 572 AELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLEL 631

Query: 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
            E  AER+ +L   S  PY  ++  YA  G WE +  V+K M + G+ K+ G S+I +  
Sbjct: 632 GEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG 691

Query: 594 RIYTFNAGELQH 605
           +++ F++G   H
Sbjct: 692 KLHEFSSGGKYH 703



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 198/403 (49%), Gaps = 40/403 (9%)

Query: 93  KSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150
           K D+L  A  VF+ +   + +VVSWN+MI+ YA  G+S  AL ++ +M LQG+     TF
Sbjct: 54  KCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTF 113

Query: 151 SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
             +L   SS   G++IH  +  SGL  S   L N+L+ MY + G +  A  +F +++  D
Sbjct: 114 VSVLGACSSLAQGREIHNRVFYSGLD-SFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
             SWN++I     SG    AL  F  M+     P+  T   VI+  +    L +G+++ A
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
             V  GF ++ +V +A I+++ KC    ++  +F+++ + D    NVMI  Y   G    
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE 291

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           ALEL+Q +  E  + T+ T   +L +   +  +  G   HS  ++ G DS   VA++L+ 
Sbjct: 292 ALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVN 351

Query: 390 MYAKTGSIDSSTEIFV----------------------------------KLDKRDLVSW 415
           MYAK GS++ + ++F                                   +L  RD +SW
Sbjct: 352 MYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISW 411

Query: 416 NTIMMGLTQNGRAAETLDVFEELL-EEGLPPDRITLAAVLLAC 457
           N ++    QNG A   + +F E+    GL PD +T  AVL AC
Sbjct: 412 NAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEAC 454



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 206/407 (50%), Gaps = 16/407 (3%)

Query: 144 RPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +P   TF  +L + SS      G+ +H   IR      + ++GN+LI MYGK   L  A 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALH-ERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 201 GVFLNME--ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
            VF +M+  + +++SWN++I+    +G+   AL  ++ M   G   D  T   V+ AC+ 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS- 121

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
             +L +G+++       G  S   + +A + ++++   + D+ R+F+ L   D    N +
Sbjct: 122 --SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGF 377
           I  + + G    AL +F+ M + D++P   T   V+S    P V   G + H+  + +GF
Sbjct: 180 ILAHSQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF 238

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           D++ VVA++L+ MY K GS   + E+F K+ KRD+VSWN ++     NG   E L+++++
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQK 298

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           L  EG    + T  ++L AC+    + +G LV S + E  G+         ++++  + G
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCG 357

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYG---DVKLTENVAERM 541
            L +A  + + M  +   + W +++ A A  G   D +    V +R+
Sbjct: 358 SLEEARKVFNAMKNRDAVA-WSTLIGAYASNGYGKDARKARKVFDRL 403



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 161/326 (49%), Gaps = 15/326 (4%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S K+    + +H H+ + G ++   +    +++Y++ G+ ++  ++F+ +  ++
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373

Query: 81  CISWNICLRGLLKSD----NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++W+  L G   S+    +   A KVFD +   D +SWN+MI+ Y   G +  A+++F 
Sbjct: 374 AVAWST-LIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFR 432

Query: 137 KMQ-LQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
           +M    G++P   TF  +L   +S       K +H  +  S L  SNVV+ N+LI+MY +
Sbjct: 433 EMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELE-SNVVVTNTLINMYAR 491

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
            G L  A  +F   +E  ++SW ++++     G    ALD F  M   G  PD+ T + +
Sbjct: 492 CGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSI 551

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQL---- 307
           +  CT   +L++G + F    ++  L+ +    +A +DL  +  RL D+  L E +    
Sbjct: 552 LFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEP 611

Query: 308 DRWDYAVINVMISTYGRYGFGEVALE 333
           D   +         +G+   GE A E
Sbjct: 612 DPVAWMTFLTACRIHGKLELGEAAAE 637


>gi|302816163|ref|XP_002989761.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
 gi|300142538|gb|EFJ09238.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
          Length = 749

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 169/535 (31%), Positives = 281/535 (52%), Gaps = 49/535 (9%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG--VRPSGFTFSIL 153
           +L  A KVFD  P+P++ SWN M++ YA  G+S+ AL +  +M+  G  V P   T+ IL
Sbjct: 214 SLIDARKVFDRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVVPDRVTYVIL 273

Query: 154 L---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L   S + +   G+ IH S+I SG+  SNVV+  ++++MYGK G +  A  VF  M   D
Sbjct: 274 LHACSNLGALREGRMIHASVIVSGME-SNVVVATAIVNMYGKCGSMGDAKMVFDKMPAKD 332

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           +I WNS+IS    +G G+ ALD +  MR+S   PD  T    ++AC+ L +L+ GK++ A
Sbjct: 333 VICWNSMISAYALNGLGKSALDLYARMRHSCVRPDAGTFVAALDACSVLNSLEDGKKIHA 392

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-----RW------------DYA 313
                    N +V +A + ++ KC  LE S+ +F  ++      W            D A
Sbjct: 393 AISASKLEWNVMVATALVSMYGKCGCLERSIAVFRAMEVRNLISWTAMLGALAHNGRDAA 452

Query: 314 VI----------------NVMISTYGRYGFGEVALELFQLMLRED------IRPTEFTLS 351
            +                N +I+ Y   G    AL L+  M+  +      +RP   T +
Sbjct: 453 ALELFARMRDEGREALLWNALIAAYTARGHPREALRLYAEMILAERRGAPPVRPDRNTFA 512

Query: 352 CVLS---SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
            VL    SI    +  G   H+ AI    D++ +VAS+L+ MY+K GS+  +  IF +L 
Sbjct: 513 AVLEACGSIGTAALGEGRMIHTQAIARACDTDVIVASALIAMYSKCGSLGDAVAIFRELS 572

Query: 409 -KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
            KR +V   T++     +G+    L++F E+ + GL P+RIT  ++L +C+    + + +
Sbjct: 573 RKRSVVLVTTMIAAYGHHGKLELALELFWEMAQRGLKPNRITFVSLLSSCSAANSLREAV 632

Query: 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
             F  M  +  + PG EHY  +IDLL ++G++ +A ++ ++MPF PGC  W S+L A   
Sbjct: 633 FYFQIMIHDCDIQPGAEHYHFVIDLLGRSGKVAQAEELINSMPFAPGCGAWMSLLAACER 692

Query: 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
           +  V+L    A+R+ +++  + L Y +L + Y   G W+ ++++KK+M   G+ +
Sbjct: 693 HSKVELGRRAADRVFEMEPKNALAYLMLGKIYVAAGMWDELLQLKKLMEDRGLKR 747



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 161/641 (25%), Positives = 271/641 (42%), Gaps = 101/641 (15%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLG--FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           + L+  C +       + IH  +  L        +L N  +D+Y + G   +   +FD I
Sbjct: 2   ANLLRSCGNSGDLSAGRRIHKRVLDLQRQHGQDVFLLNLVIDMYGKCGGLGEARAVFDAI 61

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
              N  S+NI +     +  L+ A K+F  +P  +VVSWN+M+S  A  G    A    +
Sbjct: 62  EHPNVFSFNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFLA 121

Query: 137 KMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVV------------ 181
           ++  Q   P G TF  +L+  S       G++   S I S   +   V            
Sbjct: 122 RIP-QHSLPDGITFVTILTGCSHLGLVSRGREFFRS-IESAFGMKPGVEHYCCMVDVLGR 179

Query: 182 ---------------------LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
                                L N LI MYG+ G L  A  VF    + +I SWN +++ 
Sbjct: 180 AKHLEEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAA 239

Query: 221 CFNSGYGELALDQFYSMRYSGYS--PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
             ++G+   AL     M+ SG +  PD  T  I+++AC+ L  L +G+ + A  +  G  
Sbjct: 240 YAHNGHSNEALVLSQRMKDSGATVVPDRVTYVILLHACSNLGALREGRMIHASVIVSGME 299

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           SN +V +A ++++ KC  + D+  +F+++   D    N MIS Y   G G+ AL+L+  M
Sbjct: 300 SNVVVATAIVNMYGKCGSMGDAKMVFDKMPAKDVICWNSMISAYALNGLGKSALDLYARM 359

Query: 339 LREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
               +RP   T    L +  +   +E G + H+    S  + N +VA++L+ MY K G +
Sbjct: 360 RHSCVRPDAGTFVAALDACSVLNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGCL 419

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--------------- 442
           + S  +F  ++ R+L+SW  ++  L  NGR A  L++F  + +EG               
Sbjct: 420 ERSIAVFRAMEVRNLISWTAMLGALAHNGRDAAALELFARMRDEGREALLWNALIAAYTA 479

Query: 443 ------------------------LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
                                   + PDR T AAVL AC        G +  +A+ E   
Sbjct: 480 RGHPREALRLYAEMILAERRGAPPVRPDRNTFAAVLEAC--------GSIGTAALGEGRM 531

Query: 479 VMPGEEHYACIIDLLC---------QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           +       AC  D++          + G LG A+ I   +  +    +  +++ A   +G
Sbjct: 532 IHTQAIARACDTDVIVASALIAMYSKCGSLGDAVAIFRELSRKRSVVLVTTMIAAYGHHG 591

Query: 530 DVKLTENVAERMMDLQL-PSPLPY-SLLTQAYAMRGRWEAI 568
            ++L   +   M    L P+ + + SLL+   A     EA+
Sbjct: 592 KLELALELFWEMAQRGLKPNRITFVSLLSSCSAANSLREAV 632



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 9/207 (4%)

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
           F  N ++AS     YA  G ++ + +IF  +  R++VSWNT++    Q G  +    +F 
Sbjct: 67  FSFNILIAS-----YASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRA-KIFL 120

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
             + +   PD IT   +L  C++ G V +G   F +++  +G+ PG EHY C++D+L +A
Sbjct: 121 ARIPQHSLPDGITFVTILTGCSHLGLVSRGREFFRSIESAFGMKPGVEHYCCMVDVLGRA 180

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
             L +A ++           +   +++     G +     V +R  D   P+   ++++ 
Sbjct: 181 KHLEEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPD---PNIFSWNIML 237

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKV 583
            AYA  G     + + + M+ +G   V
Sbjct: 238 AAYAHNGHSNEALVLSQRMKDSGATVV 264


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 269/485 (55%), Gaps = 11/485 (2%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           A+     M+  GV     T+S L+   S+      GK++H  +   G      V+ N+L+
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVV-NTLL 97

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           +MY K  +L  A  +F  M E +++SW ++IS  +++   + AL     M   G  P+ +
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISA-YSNKLNDKALKCLILMFREGVRPNMF 156

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S V+ AC  L NL   +Q+    +K G  S+  V SA ID++SK + L++++ +F+++
Sbjct: 157 TYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEM 213

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              D  V N +I  + +   G  AL LF+ M R      + TL+ VL +   +  +E G 
Sbjct: 214 PTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGR 273

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H   +K  FD + ++ ++L++MY K GS++ +   F ++ ++D++SW+T++ GL QNG
Sbjct: 274 QVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNG 331

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
            + + L++FE + E G  P+ IT+  VL AC++ G V+KG   F +MK+ +GV PG EHY
Sbjct: 332 YSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHY 391

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C+IDLL +AG+L +A+ +   M  +P    W ++L A  ++ +V L    A+++++L+ 
Sbjct: 392 GCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEP 451

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
                Y LL+  YA   RWE +  V+K M   GI K  GCSWI +  +I+ F  G+  H 
Sbjct: 452 EDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHP 511

Query: 607 GGQKI 611
             ++I
Sbjct: 512 KIEEI 516



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 203/404 (50%), Gaps = 38/404 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S+LI  C +  +    K +H H+F  G+    ++ N  L++Y +F   ++   LFDE+P+
Sbjct: 59  SELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPE 118

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N                               VVSW +MIS Y++   +D AL+    M
Sbjct: 119 RN-------------------------------VVSWTTMISAYSN-KLNDKALKCLILM 146

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
             +GVRP+ FT+S +L       + +Q+H  +I++GL  S+V + ++LID+Y K   L  
Sbjct: 147 FREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLE-SDVFVRSALIDVYSKWSDLDN 205

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A GVF  M   D++ WNS+I G   +  G  AL+ F  M+ +G+  D+ T++ V+ ACT 
Sbjct: 206 ALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTG 265

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L  L+ G+QV    +K  F  + I+ +A ID++ KC  LED+   F ++   D    + M
Sbjct: 266 LALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTM 323

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIKSG 376
           ++   + G+   ALELF+ M     RP   T+  VL +      VE G   F SM    G
Sbjct: 324 VAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFG 383

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
            D        L+++  + G +D + ++  +++ + D V+W T++
Sbjct: 384 VDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 43/216 (19%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A  +  + ++  C      +  + +H H+ K  F+    L N  +D+Y + G+ +D    
Sbjct: 251 ADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLED---- 304

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
                                      A   F  + E DV+SW++M++G A  GYS  AL
Sbjct: 305 ---------------------------ANSAFSRMVEKDVISWSTMVAGLAQNGYSRQAL 337

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGS--MIRSGLSLSNVVLGNS----L 186
           E+F  M+  G RP+  T   +L  + +  H   +       RS   L  V  G      L
Sbjct: 338 ELFESMKESGSRPNYIT---VLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCL 394

Query: 187 IDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           ID+ G+ G L  A  +   ME E D ++W +L+  C
Sbjct: 395 IDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGAC 430


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 178/632 (28%), Positives = 320/632 (50%), Gaps = 44/632 (6%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++  V    ++Y + +++ C S +S      IHG + + GF    ++G   +++Y++ G
Sbjct: 96  MQEEDVMPTKVTYVA-ILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCG 154

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +                      +RG   S         F  +   DVVSW +MI+  A 
Sbjct: 155 S----------------------VRGAWDS---------FKRLEHRDVVSWTAMIA--AC 181

Query: 125 CGYSDYALE--MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSN 179
             +  +AL   ++ +MQL GV P+  T   + +      +   GK ++G ++ SG+  S+
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYG-LVSSGVMESD 240

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS-GCFNSGYGELALDQFYSMR 238
           V + NS ++M+G  G+L  A  +F +M + D+++WN +I+    N  +GE A+  F  ++
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGE-AVRLFGRLQ 299

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G   ++ T  +++N  T L +L KGK +  L  + G+  +++V +A + L+ +C    
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            + ++F  +   D     VM   Y + GF + AL+LFQ M  E  RPT  TL  VL +  
Sbjct: 360 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 419

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +  ++ G Q HS  I++ F    VV ++L+ MY K G +  +  +F K+ KRD++ WN+
Sbjct: 420 HLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNS 479

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++    Q+G   ETL +F ++  +G+  D ++  +VL A ++ G V  G   F AM +++
Sbjct: 480 MLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 539

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTEN 536
            + P  E Y C++DLL +AG++ +A+DI   +    P   +W ++L A   +      + 
Sbjct: 540 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 599

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            AE++++        Y +L+  YA  G W+ + R++K+MR  G+ K  G S I I NR++
Sbjct: 600 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 659

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            F  G+  H     IY  L +L  EM   G +
Sbjct: 660 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI 691



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 255/524 (48%), Gaps = 42/524 (8%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K   ++   L+ RC S K+ D  + +H H+   GF  +  +    + +Y++ G+      
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGS------ 54

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
               +P+                     A +VF+ +   DV +W  MI  Y   G  D A
Sbjct: 55  ----VPE---------------------AQQVFEILERKDVFAWTRMIGIYCQQGDYDRA 89

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L MF +MQ + V P+  T+  +L+  +S      G +IHG +++ G    +V +G +LI+
Sbjct: 90  LGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFE-GDVFVGTALIN 148

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A+  F  +E  D++SW ++I+ C       LA   +  M+  G  P++ T
Sbjct: 149 MYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKIT 208

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQL 307
           +  V NA      L +GK V+ L V  G + + + V+++ +++F     L D+ RLFE +
Sbjct: 209 LYTVFNAYGDPNYLSEGKFVYGL-VSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM 267

Query: 308 DRWDYAVINVMISTY-GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHG 365
              D    N++I+ Y     FGE A+ LF  + ++ ++  + T   +L+    +  +  G
Sbjct: 268 VDRDVVTWNIVITLYVQNENFGE-AVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKG 326

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
              H +  ++G+D +AVVA++LM +Y +  +   + +IFV +  +D+++W  + +   QN
Sbjct: 327 KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQN 386

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
           G   E L +F+E+  EG  P   TL AVL  C +   + KG  + S + E    M     
Sbjct: 387 GFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE 446

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            A +I++  + G++ +A+ +   M  +    +W S+L A A +G
Sbjct: 447 TA-LINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHG 488



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 9/219 (4%)

Query: 346 TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           T F ++ +        V+HG + H      GF+ N +V   L++MYA+ GS+  + ++F 
Sbjct: 4   TAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFE 63

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
            L+++D+ +W  ++    Q G     L +F ++ EE + P ++T  A+L AC     +  
Sbjct: 64  ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKD 123

Query: 466 GMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           GM +   + +   E  V  G      +I++  + G +  A D    +  +   S W +++
Sbjct: 124 GMEIHGQILQQGFEGDVFVG----TALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAMI 178

Query: 523 RASAIYGDVKLTENVAERM-MDLQLPSPLPYSLLTQAYA 560
            A   +    L   +  RM +D  +P+ +    +  AY 
Sbjct: 179 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYG 217


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 161/506 (31%), Positives = 276/506 (54%), Gaps = 7/506 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   ++ + +VFDEI + +VV W SMI GY         L +F++M+   V  + +T   
Sbjct: 184 KCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGS 243

Query: 153 LLSTVSS--ACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           L++  +   A H GK +HG +I+SG  L N  L   L+D+Y K G +  AF VF  +  +
Sbjct: 244 LVTACTKLGALHQGKWVHGYVIKSGFDL-NSFLVTPLLDLYFKCGDIRDAFSVFDELSTI 302

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++SW ++I G    GY   AL  F   R+    P+  T S V++AC +  +L+ G+ V 
Sbjct: 303 DLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVH 362

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L +K+G   ++   +A +D+++KC+ + D+  +FE +   D    N +IS Y + G+  
Sbjct: 363 CLGIKLGS-EDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAY 421

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASSL 387
            ALELF  M  + + P   TL  VLS+   +     GS  H  AIK+G  S +V V ++L
Sbjct: 422 EALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTAL 481

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +  YAK G  +S+  IF ++ +++ ++W+ ++ G    G  + +L++F ++L+E L P+ 
Sbjct: 482 LNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNE 541

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +    +L AC++ G + +G   F+ M + Y  +P  +HYAC++DLL +AG+L +A+D   
Sbjct: 542 VIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIE 601

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            +P QP  S+  + L    ++    L E    RM++L       Y L++  YA  GRW  
Sbjct: 602 KIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQ 661

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKN 593
             +V ++M++ G+ K+ G S + I+ 
Sbjct: 662 ANQVMELMKQRGLAKLPGWSLVDIET 687



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 234/476 (49%), Gaps = 14/476 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGY-ASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
           +++ A  +FD I  PD+ SW  MI  Y  +  YS+      ++++          FSI+L
Sbjct: 86  HVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVL 145

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S +     G+++H  +++ G   S V+ G  L+DMY K   +  +  VF  + + ++
Sbjct: 146 KACSELRETDEGRKLHCQIVKVGSPDSFVLTG--LVDMYAKCREVEDSRRVFDEILDRNV 203

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           + W S+I G   +   +  L  F  MR      ++YT+  ++ ACTKL  L +GK V   
Sbjct: 204 VCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGY 263

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            +K GF  NS +++  +DL+ KC  + D+  +F++L   D      MI  Y + G+   A
Sbjct: 264 VIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREA 323

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L+LF     +D+ P   T S VLS+      +  G   H + IK G   +A   ++L++M
Sbjct: 324 LKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDM 382

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YAK   I  +  +F  +  +D+++WN+I+ G TQNG A E L++F+++  + + PD ITL
Sbjct: 383 YAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITL 442

Query: 451 AAVLLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-CIIDLLCQAGQLGKAIDITST 508
            +VL AC + G +     L   A+K   G++ G  +    +++   + G    A  I   
Sbjct: 443 VSVLSACASVGAYRVGSSLHGYAIKA--GLLSGSVYVGTALLNFYAKCGDAESARVIFDE 500

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRG 563
           M  +     W +++    I GD   +  +   M+  +L P+ + ++ +  A +  G
Sbjct: 501 MG-EKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSG 555



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 187/382 (48%), Gaps = 20/382 (5%)

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           F+   +  TVSS    ++IH  ++  GLS  +++    L+ +YG  G +  A  +F  + 
Sbjct: 43  FSLLGICKTVSSL---RKIHALLVVHGLS-EDLLCETKLVSLYGSFGHVECARLMFDRIR 98

Query: 208 ELDIISWNSLISGCF-NSGYGELALDQFYSMRYSG--YSPDEYTISIVINACTKLRNLDK 264
             D+ SW  +I   F N  Y E+   QFY+ R        D    SIV+ AC++LR  D+
Sbjct: 99  NPDLYSWKVMIRWYFLNDSYSEIV--QFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE 156

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+++    VKVG   +S VL+  +D+++KC  +EDS R+F+++   +      MI  Y +
Sbjct: 157 GRKLHCQIVKVGS-PDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 215

Query: 325 YGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVV 383
               +  L LF  M    +   ++TL S V +   +  +  G   H   IKSGFD N+ +
Sbjct: 216 NDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL 275

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            + L+++Y K G I  +  +F +L   DLVSW  +++G  Q G   E L +F +   + L
Sbjct: 276 VTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDL 335

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA---CIIDLLCQAGQLG 500
            P+ +T ++VL AC   G ++ G  V        G+  G E       ++D+  +   +G
Sbjct: 336 LPNTVTTSSVLSACAQTGSLNMGRSVHC-----LGIKLGSEDATFENALVDMYAKCHMIG 390

Query: 501 KAIDITSTMPFQPGCSIWESIL 522
            A  +  T+ F      W SI+
Sbjct: 391 DARYVFETV-FDKDVIAWNSII 411



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 185/393 (47%), Gaps = 39/393 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    +    K +HG++ K GF+ +++L    LDLY + G   D   +FDE+   +
Sbjct: 244 LVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTID 303

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW                                +MI GYA  GY   AL++F+  + 
Sbjct: 304 LVSW-------------------------------TAMIVGYAQRGYPREALKLFTDERW 332

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + + P+  T S +LS  +   S   G+ +H   I+  L   +    N+L+DMY K  ++ 
Sbjct: 333 KDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK--LGSEDATFENALVDMYAKCHMIG 390

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  + + D+I+WNS+ISG   +GY   AL+ F  MR     PD  T+  V++AC 
Sbjct: 391 DARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACA 450

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +     G  +   ++K G LS S+ V +A ++ ++KC   E +  +F+++   +    +
Sbjct: 451 SVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWS 510

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIK 374
            MI  YG  G    +LELF  ML+E + P E   + +LS+     +  E    F++M   
Sbjct: 511 AMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQV 570

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
             F  +    + ++++ A+ G ++ + +   K+
Sbjct: 571 YNFVPSMKHYACMVDLLARAGRLEEALDFIEKI 603


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/524 (31%), Positives = 276/524 (52%), Gaps = 14/524 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K ++L  A  +FD I    ++ WN++I  Y    +S   + +F ++ +    P  FT   
Sbjct: 59  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPC 117

Query: 153 LL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           ++   + +     GKQIHG  ++ G   S+V +  SL++MY K G +  A  VF  M + 
Sbjct: 118 VIKGCARLGVVQEGKQIHGLALKIGFG-SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDK 176

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D++ WNSLI G    G  ++AL  F  M       D ++ +++++  +K   ++  +++F
Sbjct: 177 DVVLWNSLIDGYARCGEIDIALQLFEEMP----ERDAFSWTVLVDGLSKCGKVESARKLF 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
                     N +  +A I+ + K    + ++ LF Q+  WD    N+MI+ Y   G   
Sbjct: 233 DQMP----CRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFM 288

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A+++F +ML+   RP+  TL  VLS++  +  +  G   HS   K+GF+ + ++ +SL+
Sbjct: 289 DAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLI 348

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           EMYAK G I+S+  +F  + K+ +  W  I++GL  +G A   L +F E+ + GL P+ I
Sbjct: 349 EMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAI 408

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
               VL ACN+ G VD G   F  M  EY + P  EHY C++D+LC+AG L +A +    
Sbjct: 409 IFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIEN 468

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP  P   IW S+L  S  +G + + E  A+R++++   +   Y LL+  YA  G WE +
Sbjct: 469 MPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKV 528

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
             V+++M K G  K  GCS +  K  ++ F  G++ H   ++IY
Sbjct: 529 SHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIY 572



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 177/404 (43%), Gaps = 52/404 (12%)

Query: 52  LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD 111
           L N  +D Y+R G  D  LQLF+E+P+++  SW + + GL K   +++A K+FD++P  +
Sbjct: 180 LWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRN 239

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQ------------------------------ 141
           +VSWN+MI+GY   G  D ALE+F +M +                               
Sbjct: 240 LVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLK 299

Query: 142 -GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G RPS  T   +LS VS       G+ IH  M ++G  L   +LG SLI+MY K G + 
Sbjct: 300 LGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDG-ILGTSLIEMYAKCGCIE 358

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  +++  +  W ++I G    G    AL  F  M  +G  P+      V+NAC 
Sbjct: 359 SALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACN 418

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
               +D G+Q F + +    +  ++      +D+  +   LE++    E +      VI 
Sbjct: 419 HAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIW 478

Query: 317 VMI----STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP--VEHGSQFHS 370
           + +      +G+   GE A +        ++ P       +LS++       E  S    
Sbjct: 479 MSLLGGSRNHGKIDIGEYAAQRVI-----EVAPETIGCYILLSNMYAASGMWEKVSHVRE 533

Query: 371 MAIKSGFDSNAVVAS-----SLMEMYAKTGSIDSSTEIFVKLDK 409
           M  K GF  +   +S     +L E      S   + EI+ K+ +
Sbjct: 534 MMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSE 577


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 173/546 (31%), Positives = 299/546 (54%), Gaps = 34/546 (6%)

Query: 100 ALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMFSKMQL----QGVRPSGF---TF 150
           A +VFDE+PE   DVVSW ++IS Y+S G  D A   F +M+      G    G    + 
Sbjct: 106 AAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSL 165

Query: 151 SILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF- 203
             L+S  +  C       G  +HG +++ G  +S   LGNS++ MY     +  A+ VF 
Sbjct: 166 GALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTH-LGNSMVHMYSACKDVGGAWRVFN 224

Query: 204 -LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS---PDEYTISIVINACTKL 259
            + +E+ D++SWNSLISG   +G  E AL  F  M   G S   P+  T+  ++ +C +L
Sbjct: 225 GIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAEL 284

Query: 260 RNLDKGKQVFA-LSVKVGFL---SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
             ++    V   +S +   L    + +VL+A +D+ ++C  L  +  +F+ ++  +    
Sbjct: 285 GCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCW 344

Query: 316 NVMISTYGRYGFGEVALELFQLMLRE------DIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
           + MI+ Y +    E AL LF+ ML E      +++P   TL  V+++   +      S  
Sbjct: 345 SAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMI 404

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNG 426
           H  A+ +G D +A +AS+L++M AK G I+   ++F ++D+  R +VSW++++     +G
Sbjct: 405 HKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHG 464

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
                L++F E+   G  P+ IT  +VL AC++ G V++G   F++M+++YG+ P  +HY
Sbjct: 465 EGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHY 524

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC++DLL +AG L +A ++   MP +   ++W S+L A  ++G+ KL E V ++++ L  
Sbjct: 525 ACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDS 584

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            S   + LL   Y   GRW+ +VR++  +R++G+ K+ G S+I I N +Y+F A +  H 
Sbjct: 585 NSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHP 644

Query: 607 GGQKIY 612
             + IY
Sbjct: 645 ESEMIY 650



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 220/463 (47%), Gaps = 45/463 (9%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---G 163
           I   D   WNS+I+  A+      AL  F++MQ   V  + FTF  LL   ++       
Sbjct: 13  ISHKDTFHWNSLIAKNAT-QNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDIISWNSLISGC 221
            Q+H  + R GL+ ++     +L+D YGK G  YYA  VF  M E  +D++SW +LIS  
Sbjct: 72  LQVHAYLTRLGLA-ADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 222 FNSGYGELALDQFYSMRY-SGYSPDE------YTISIVINACT---KLRNLDKGKQVFAL 271
            ++G  + A   F  MR+  G+   E       ++  +++AC        L +G  V  L
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE--QLDRWDYAVINVMISTYGRYGFGE 329
            VK GF  ++ + ++ + ++S C  +  + R+F    +++ D    N +IS +   G  E
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 330 VALELFQLMLRED---IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS-----N 380
            AL  F+ M+ E    + P   T+  +L S   +  VE  S  H   I S   S     +
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEY-ISSRHSSLLVAKD 309

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
            VV ++L++M+A+ G++  + EIF  ++ +++V W+ ++ G  Q     E L +F ++L 
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 441 EG------LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA----CII 490
           EG      + P+ +TL +V+ AC+  G         ++M  +Y V  G +  A     +I
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRS-----ASMIHKYAVATGLDQDARIASALI 424

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSI-WESILRASAIYGDVK 532
           D+  + G +     + S M       + W S++ A  I+G+ K
Sbjct: 425 DMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGK 467



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 13/220 (5%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG------VRPS 146
           +  NL  A ++FD +   +VV W++MI+GY      + AL +F +M ++G      V+P+
Sbjct: 322 RCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPN 381

Query: 147 GFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             T   +++  S   ++     IH   + +GL   +  + ++LIDM  K G + +   VF
Sbjct: 382 AVTLVSVIAACSRLGASRSASMIHKYAVATGLD-QDARIASALIDMCAKCGDIEHGRQVF 440

Query: 204 LNMEE--LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
             M+E    ++SW+S+I      G G+ AL+ F  MR  GY P+E T   V++AC+    
Sbjct: 441 SEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGL 500

Query: 262 LDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
           +++GK  F ++    G        +  +DL  +   L+++
Sbjct: 501 VEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEA 540


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 159/511 (31%), Positives = 274/511 (53%), Gaps = 6/511 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVS 158
           A KVFD +PE +VVSW +M+ GY + G+    L++F  M      RP+ F  +++  + S
Sbjct: 88  ARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCS 147

Query: 159 SACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           S+     GKQ HG  ++SGL +S+  + N+L+ MY        A  V  ++   D+  ++
Sbjct: 148 SSGRIEEGKQFHGCFLKSGL-MSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFS 206

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           S +SG    G  +   +    M       D  T    +  C+ LR+L+  +Q+ +  V++
Sbjct: 207 SALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRL 266

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           GF S      A I+++ KC ++  + R+F+     +  +   ++  Y +    E AL LF
Sbjct: 267 GFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLF 326

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M  +++ P E+T +  L+SI  +  ++HG   H + +KSG+ ++ +V ++L+ MYAK+
Sbjct: 327 SKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKS 386

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           GSI+ + + F  +  RD+V+WNT++ G + +G   E L+ F+ ++  G  P+RIT   VL
Sbjct: 387 GSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVL 446

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ GFV++G+  F+ + +++ V P  +HY CI+ LL +AG    A D   T P +  
Sbjct: 447 QACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWD 506

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
              W ++L A  +  + +L + VAE  +         Y LL+  +A    WE +  V+ +
Sbjct: 507 VVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSL 566

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
           M K G+ K  G SWIGI+N+ + F A E QH
Sbjct: 567 MNKRGVKKEPGVSWIGIRNQTHVFLAEENQH 597


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/589 (28%), Positives = 291/589 (49%), Gaps = 67/589 (11%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           + GF +  ++GN  +D+Y++                  C+              +D A+K
Sbjct: 1   RKGFGSDQHVGNSLIDMYTK------------------CVE-------------MDEAVK 29

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
           VF+ +P   +VSWN +I+G+   G    A+E+ S MQ  G  P+  T+S LL++   A  
Sbjct: 30  VFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKA-- 87

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
            + +H                               A  +F  +    + +WN+L+SG  
Sbjct: 88  -RDVHS------------------------------ARAMFDKISRPSVTTWNTLLSGYC 116

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
                +  ++ F  M++    PD  T+++++++C+KL  LD G+QV + SV+    ++  
Sbjct: 117 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 176

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S  +D++SKC ++  +  +F ++   D    N +IS    +   + A + F+ M    
Sbjct: 177 VASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 236

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           I PTE + + +++S   +  + HG Q H+  +K G+D N  V S+L++MYAK G++D + 
Sbjct: 237 IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR 296

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
             F  +  +++V+WN ++ G  QNG   + +++FE +L     PD +T  AVL  C++ G
Sbjct: 297 LFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSG 356

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VDK M  F++M+  YG++P  EHY C+ID L +AG+  +   +   MP +    IWE +
Sbjct: 357 LVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVL 416

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ + +L +  AE +  +   +P PY LL+  YA  GR      V+ +M   G+ 
Sbjct: 417 LAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVV 476

Query: 582 KVTGCSWIGIKNRIYTFN-AGELQHHGGQ-KIYLVLRLLTWEMEDEGCV 628
           K  G SWI  K+ +  F  A +L   GG+  ++     +    +DE CV
Sbjct: 477 KGRGYSWIDQKDGVRAFMVADDLGADGGELTMFSNEDSIPQVHQDENCV 525



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C      DF + +H    +   +   ++ +  +D+YS+ G       +F+++ +++
Sbjct: 146 ILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 205

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN                                +ISG      +  A + F +M+ 
Sbjct: 206 VVCWNS-------------------------------IISGLTIHSLNKEAFDFFKQMRE 234

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  +++ ++   S +SS  HG+QIH  +++ G    NV +G++LIDMY K G + 
Sbjct: 235 NGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYD-QNVYVGSALIDMYAKCGNMD 293

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  M   +I++WN +I G   +G G+ A++ F  M  +   PD  T   V+  C+
Sbjct: 294 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 353

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
               +DK    F ++    G +  +   +  ID   +  R  +   L  ++   D  +I
Sbjct: 354 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPII 412



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY S +I+ C    S    + IH  + K G++ + Y+G+  +D+Y++ G  DD    FD 
Sbjct: 243 SYAS-MINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 301

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYA 131
           +  KN ++WN  + G  ++   D A+++F+ +     +PD V++ ++++G +  G  D A
Sbjct: 302 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 361

Query: 132 LEMFSKMQLQ-GVRPSGFTFSILLSTVSSA 160
           +  F+ M+   G+ P    ++ L+  +  A
Sbjct: 362 MAFFNSMENSYGIIPLAEHYTCLIDALGRA 391


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 172/546 (31%), Positives = 286/546 (52%), Gaps = 11/546 (2%)

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
           +K+    N+ +   +K   +  A K+FD +P  +++SW +++SGY        A+E+F+ 
Sbjct: 281 EKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTS 340

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M   G++P  F  S +L++ +S      G Q+H   I++ L  ++  + NSLIDMY K  
Sbjct: 341 MPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLG-NDSYVTNSLIDMYAKCD 399

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYG-EL--ALDQFYSMRYSGYSPDEYTISI 251
            L  A  VF      D++ +N++I G    G   EL  AL+ F+ MR+    P   T   
Sbjct: 400 CLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVS 459

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ A   L +L   KQ+  L  K G   +    SA I ++S C  L+DS  +F+++   D
Sbjct: 460 LLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKD 519

Query: 312 YAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFH 369
             + N M S Y +    E AL LF +L L  D RP EFT +  V ++  +  ++ G +FH
Sbjct: 520 LVIWNSMFSGYVQQSENEEALNLFLELQLSRD-RPDEFTFVDMVTAAGNLASLQLGQEFH 578

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
              +K G + N  + ++L++MYAK GS + + + F     RD+V WN+++     +G   
Sbjct: 579 CQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGR 638

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           + L + E+++ EG+ P+ IT   VL AC++ G V+ G+  F  M   +G+ P  EHY C+
Sbjct: 639 KALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCM 697

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           + LL +AG+L +A ++   MP +P   +W S+L   A  G+V+L E  AE  +       
Sbjct: 698 VSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDS 757

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             ++LL+  YA +G W    +V++ M+  G+ K  G SWI I   ++ F + +  H    
Sbjct: 758 GSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKAN 817

Query: 610 KIYLVL 615
           +IY VL
Sbjct: 818 QIYEVL 823



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 233/527 (44%), Gaps = 69/527 (13%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +   L K  F+   Y+G   +D Y + G  D    +FD +P+K+ ++W   + G +K   
Sbjct: 170 LQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGR 229

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              +L++F ++ E +VV                               P G+    +LST
Sbjct: 230 SYVSLQLFYQLMEGNVV-------------------------------PDGY----ILST 254

Query: 157 VSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           V SAC        GKQIH  ++R G    +  L N LID Y K G +  A  +F  M   
Sbjct: 255 VLSACSILPFLEGGKQIHAHILRYGHE-KDASLMNVLIDSYVKCGRVRAAHKLFDGMPNK 313

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +IISW +L+SG   +   + A++ F SM   G  PD +  S ++ +C  L  L+ G QV 
Sbjct: 314 NIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVH 373

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG- 328
           A ++K    ++S V ++ ID+++KC+ L ++ ++F+     D  + N MI  Y R G   
Sbjct: 374 AYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQW 433

Query: 329 --EVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL +F  M    IRP+  T   +L +S  +  +    Q H +  K G + +    S
Sbjct: 434 ELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGS 493

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445
           +L+ +Y+    +  S  +F ++  +DLV WN++  G  Q     E L++F EL      P
Sbjct: 494 ALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRP 553

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC-------IIDLLCQAGQ 498
           D  T   ++ A         G L    + +E+     +    C       ++D+  + G 
Sbjct: 554 DEFTFVDMVTAA--------GNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605

Query: 499 ---LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
                KA D  ++         W S++ + A +G+ +    + E+MM
Sbjct: 606 PEDAHKAFDSAASRD----VVCWNSVISSYANHGEGRKALQMLEKMM 648



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 218/451 (48%), Gaps = 54/451 (11%)

Query: 24  RCLSFKSFD----FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           R L  ++ D    +   +HG +   G    TYL N  ++LYSR G               
Sbjct: 49  RLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAG--------------- 93

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM- 138
                            +  A KVF+++PE ++V+W++M+S     G+ + +L +F    
Sbjct: 94  ----------------GMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFW 137

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGK---------QIHGSMIRSGLSLSNVVLGNSLIDM 189
           + +   P+ +    +LS+   AC G          Q+   +++S     +V +G  LID 
Sbjct: 138 RTRKNSPNEY----ILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFD-RDVYVGTLLIDF 192

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G + YA  VF  + E   ++W ++ISGC   G   ++L  FY +      PD Y +
Sbjct: 193 YLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYIL 252

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S V++AC+ L  L+ GKQ+ A  ++ G   ++ +++  ID + KC R+  + +LF+ +  
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPN 312

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
            +      ++S Y +    + A+ELF  M +  ++P  F  S +L+S   +  +E G+Q 
Sbjct: 313 KNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQV 372

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H+  IK+   +++ V +SL++MYAK   +  + ++F      D+V +N ++ G ++ G  
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQ 432

Query: 429 AE---TLDVFEELLEEGLPPDRITLAAVLLA 456
            E    L++F ++    + P  +T  ++L A
Sbjct: 433 WELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 196/423 (46%), Gaps = 40/423 (9%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  +  CS ++  C S  + +F   +H +  K      +Y+ N  +D+Y+          
Sbjct: 347 KPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYA---------- 396

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS--- 128
                                K D L  A KVFD     DVV +N+MI GY+  G     
Sbjct: 397 ---------------------KCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWEL 435

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
             AL +F  M+ + +RPS  TF  LL   ++++S    KQIHG M + GL+L ++  G++
Sbjct: 436 HDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNL-DIFAGSA 494

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI +Y     L  +  VF  M+  D++ WNS+ SG       E AL+ F  ++ S   PD
Sbjct: 495 LIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPD 554

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E+T   ++ A   L +L  G++     +K G   N  + +A +D+++KC   ED+ + F+
Sbjct: 555 EFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFD 614

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEH 364
                D    N +IS+Y  +G G  AL++ + M+ E I P   T   VLS+      VE 
Sbjct: 615 SAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVED 674

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLT 423
           G +   + ++ G +        ++ +  + G ++ + E+  K+  K   + W +++ G  
Sbjct: 675 GLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCA 734

Query: 424 QNG 426
           + G
Sbjct: 735 KAG 737



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 159/296 (53%), Gaps = 5/296 (1%)

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +HG +I SGL L +  L N L+++Y + G + YA  VF  M E ++++W++++S C + G
Sbjct: 66  VHGQIIVSGLEL-DTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHG 124

Query: 226 YGELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGK--QVFALSVKVGFLSNSI 282
           + E +L  F    R    SP+EY +S  I AC+ L    +    Q+ +  VK  F  +  
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVY 184

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +  ID + K   ++ +  +F+ L          MIS   + G   V+L+LF  ++  +
Sbjct: 185 VGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGN 244

Query: 343 IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           + P  + LS VLS+  I P +E G Q H+  ++ G + +A + + L++ Y K G + ++ 
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAH 304

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++F  +  ++++SW T++ G  QN    E +++F  + + GL PD    +++L +C
Sbjct: 305 KLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSC 360



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 12/242 (4%)

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR-EDIRPT 346
           ++L+S+   +  + ++FE++   +    + M+S    +GF E +L +F    R     P 
Sbjct: 86  MNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPN 145

Query: 347 EFTLSCVLSSIPIPPVEHGS------QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           E+ LS   S I       GS      Q  S  +KS FD +  V + L++ Y K G+ID +
Sbjct: 146 EYILS---SFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYA 202

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
             +F  L ++  V+W T++ G  + GR+  +L +F +L+E  + PD   L+ VL AC+  
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSIL 262

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
            F++ G  + + +   YG          +ID   + G++  A  +   MP +   S W +
Sbjct: 263 PFLEGGKQIHAHIL-RYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIIS-WTT 320

Query: 521 IL 522
           +L
Sbjct: 321 LL 322


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 287/534 (53%), Gaps = 7/534 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  VFD + E D++SWNS+I+G A  G    A+ +F ++   G++P  +T + +L   SS
Sbjct: 369 ARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428

Query: 160 ACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
              G    KQ+H   I+   ++S+  +  +LID Y +   +  A  +       D+++WN
Sbjct: 429 LPEGLSLSKQVHVHAIKIN-NVSDSFVSTALIDAYSRNRCMKEA-EILFERHNFDLVAWN 486

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           ++++G   S  G   L  F  M   G   D++T++ V   C  L  +++GKQV A ++K 
Sbjct: 487 AMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS 546

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G+  +  V S  +D++ KC  +  +   F+ +   D      MIS     G  E A  +F
Sbjct: 547 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVF 606

Query: 336 QLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M    + P EFT++ +  +S  +  +E G Q H+ A+K    ++  V +SL++MYAK 
Sbjct: 607 SQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKC 666

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           GSID +  +F +++  ++ +WN +++GL Q+G   ETL +F+++   G+ PD++T   VL
Sbjct: 667 GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVL 726

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G V +      +M  +YG+ P  EHY+C+ D L +AG + +A ++  +M  +  
Sbjct: 727 SACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEAS 786

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
            S++ ++L A  + GD +  + VA ++++L+      Y LL+  YA   +W+ +   + +
Sbjct: 787 ASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTM 846

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           M+ + + K  G SWI +KN+I+ F   +  +   + IY  ++ +  +++ EG V
Sbjct: 847 MKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYV 900



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 152/570 (26%), Positives = 274/570 (48%), Gaps = 49/570 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  CL       +++ HG+  K+G +   ++    +++Y +FG   +   LF+E+P 
Sbjct: 149 SPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPY 208

Query: 79  KNCISWNICLRGLL----KSDNLDTA--------------LKVFDEIPEPD--------- 111
           ++ + WN+ L+  L    K + +D +              L++   I   D         
Sbjct: 209 RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSF 268

Query: 112 -----------VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---V 157
                      ++  N  +S Y   G     L+ F+ M    V     TF ++L+T   V
Sbjct: 269 ANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKV 328

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
            S   G+Q+H   ++ GL L  + + NSLI+MY KL    +A  VF NM E D+ISWNS+
Sbjct: 329 DSLALGQQVHCMALKLGLDLM-LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSV 387

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL-RNLDKGKQVFALSVKVG 276
           I+G   +G    A+  F  +   G  PD+YT++ V+ A + L   L   KQV   ++K+ 
Sbjct: 388 IAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKIN 447

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            +S+S V +A ID +S+   ++++  LFE+ + +D    N M++ Y +   G   L+LF 
Sbjct: 448 NVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FDLVAWNAMMAGYTQSHDGHKTLKLFA 506

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           LM ++  R  +FTL+ V  +   +  +  G Q H+ AIKSG+D +  V+S +++MY K G
Sbjct: 507 LMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCG 566

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            + ++   F  +   D V+W T++ G  +NG       VF ++   G+ PD  T+A +  
Sbjct: 567 DMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAK 626

Query: 456 ACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
           A +    +++G  + + A+K      P       ++D+  + G +  A  +   +     
Sbjct: 627 ASSCLTALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-N 683

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDL 544
            + W ++L   A +G+ K T  + ++M  L
Sbjct: 684 ITAWNAMLVGLAQHGEGKETLQLFKQMKSL 713



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 184/432 (42%), Gaps = 67/432 (15%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K  H  +     N   +L N  + +YS+ G+     ++FD++P ++ +SWN  L    
Sbjct: 57  LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116

Query: 93  KS-----DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           +S     +N+  A  +F  I   DVV                Y   M     L+    SG
Sbjct: 117 QSSECVVENIQQAFLLF-RILRQDVV----------------YTSRMTLSPMLKLCLHSG 159

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           + ++            +  HG   + GL     V G +L+++Y K G +     +F  M 
Sbjct: 160 YVWA-----------SESFHGYACKIGLDGDEFVAG-ALVNIYLKFGKVKEGKVLFEEMP 207

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D++ WN ++      G+ E A+D   +   SG +P+E T+ ++               
Sbjct: 208 YRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLAR------------- 254

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
                     +S     +  +  F+  N   D+  + E + R      N  +S Y   G 
Sbjct: 255 ----------ISGDDSDAGQVKSFANGN---DASSVSEIIFR------NKGLSEYLHSGQ 295

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASS 386
               L+ F  M+  D+   + T   +L +++ +  +  G Q H MA+K G D    V++S
Sbjct: 296 YSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNS 355

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MY K      +  +F  + +RDL+SWN+++ G+ QNG   E + +F +LL  GL PD
Sbjct: 356 LINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPD 415

Query: 447 RITLAAVLLACN 458
           + T+ +VL A +
Sbjct: 416 QYTMTSVLKAAS 427



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 35/226 (15%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H +  K G++   ++ +  LD+Y + G        FD IP  + ++W          
Sbjct: 537 KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAW---------- 586

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                 +MISG    G  + A  +FS+M+L GV P  FT + L 
Sbjct: 587 ---------------------TTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLA 625

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S +++   G+QIH + ++   + ++  +G SL+DMY K G +  A+ +F  +E ++I
Sbjct: 626 KASSCLTALEQGRQIHANALKLNCT-NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI 684

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +WN+++ G    G G+  L  F  M+  G  PD+ T   V++AC+
Sbjct: 685 TAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 8/187 (4%)

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV-----ALELFQLMLRED 342
           I ++SKC  L  + R+F+++   D    N +++ Y +     V     A  LF+++ ++ 
Sbjct: 81  ISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDV 140

Query: 343 IRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +  +  TLS +L   +    V     FH  A K G D +  VA +L+ +Y K G +    
Sbjct: 141 VYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGK 200

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F ++  RD+V WN ++    + G   E +D+       GL P+ ITL   LLA   G 
Sbjct: 201 VLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLR--LLARISGD 258

Query: 462 FVDKGML 468
             D G +
Sbjct: 259 DSDAGQV 265



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 13/149 (8%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CL+  + +  + IH +  KL      ++G   +D+Y++ G+ DD   LF  I   N  +W
Sbjct: 630 CLT--ALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 687

Query: 85  NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  L GL +       L++F ++     +PD V++  ++S   +C +S    E +  M+ 
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLS---ACSHSGLVSEAYKHMRS 744

Query: 141 Q----GVRPSGFTFSILLSTVSSACHGKQ 165
                G++P    +S L   +  A   KQ
Sbjct: 745 MHGDYGIKPEIEHYSCLADALGRAGLVKQ 773


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/534 (30%), Positives = 285/534 (53%), Gaps = 12/534 (2%)

Query: 103 VFDEI-PEPDVVSWNSMISGYASCGYSDY--ALEMFSKMQLQGVRPSGFTFSILL---ST 156
           +F  I P P+  ++N M+    +  + DY   L ++ +M+   + P+ FTF  +    + 
Sbjct: 71  IFSHITPHPNDYAFNIMLRA-TTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACAN 129

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +      +  H  + + GL   +  + NS++ MY + G    A  VF  + E D++SWNS
Sbjct: 130 LEEIRMARLAHCEVFKLGLDNDHHTV-NSMVTMYFRCGENGVARKVFDEITEKDLVSWNS 188

Query: 217 LISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           L+SG    G+   A++ F  +R  SG+ PDE ++  V+ AC +L +L+ G+ V    V+ 
Sbjct: 189 LLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER 248

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G   NS + SA I ++SKC  L  S R+F+ +   D+   N  IS Y + G  + A+ LF
Sbjct: 249 GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLF 308

Query: 336 QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M    + P + TL+ VLS+   I  ++ G Q    A   G   +  VA++L++MYAK 
Sbjct: 309 HSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKC 368

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRITLAA 452
           GS++S+  +F  + +++  SWN ++  L  +G+A E L +FE + +EG    P+ IT  +
Sbjct: 369 GSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVS 428

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L AC + G VD+G  +F  M   +G++P  EHY+C++DLL +AG L +A D+   MP +
Sbjct: 429 LLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK 488

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P      ++  A     +V + E V + +++L   +   Y + ++ Y     W+   R++
Sbjct: 489 PDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMR 548

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            +MR+NG+ K  GCSWI + N++  F +G+        +  ++ LL  E++ EG
Sbjct: 549 ALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEG 602



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 211/461 (45%), Gaps = 78/461 (16%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C + +    A+  H  +FKLG +   +  N  + +Y R G +                  
Sbjct: 127 CANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENG----------------- 169

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GV 143
                          A KVFDEI E D+VSWNS++SGYA  G++  A+E+F +++ + G 
Sbjct: 170 --------------VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF 215

Query: 144 RPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            P   +    L +V  AC        G+ + G ++  G+ + N  +G++LI MY K G L
Sbjct: 216 EPDEMS----LVSVLGACGELGDLELGRWVEGFVVERGMKV-NSYIGSALISMYSKCGEL 270

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             +  +F  M   D I+WN+ IS    +G  + A+  F+SM+ +G  P++ T++ V++AC
Sbjct: 271 VSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSAC 330

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             +  LD GKQ+   +   G   +  V +A ID+++KC  LE + R+F  + R + A  N
Sbjct: 331 ASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWN 390

Query: 317 VMISTYGRYGFGEVALELFQLMLRE--DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374
            MIS    +G  + AL LF+ M  E    RP + T   +LS+            H+  + 
Sbjct: 391 AMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC----------VHAGLVD 440

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G+         L +M +    +    E            ++ ++  L++ G   E  DV
Sbjct: 441 EGY--------RLFDMMSTLFGLVPKIE-----------HYSCMVDLLSRAGHLYEAWDV 481

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
            E++ E+   PD +TL A+  AC     VD G  V   + E
Sbjct: 482 IEKMPEK---PDNVTLGALHSACQRKKNVDIGERVIQMLLE 519



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 39/325 (12%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C      +  + + G + + G   ++Y+G+  + +YS+ G                    
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCG-------------------- 268

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L ++ ++FD +P  D ++WN+ IS YA  G +D A+ +F  M+  GV 
Sbjct: 269 -----------ELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + +LS  +S      GKQ+       GL   ++ +  +LIDMY K G L  A  
Sbjct: 318 PNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQ-HDIFVATALIDMYAKCGSLESAQR 376

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISIVINACTKL 259
           VF +M   +  SWN++IS   + G  + AL  F  M   G S  P++ T   +++AC   
Sbjct: 377 VFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHA 436

Query: 260 RNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINV 317
             +D+G ++F  +S   G +      S  +DL S+   L ++  + E++ ++ D   +  
Sbjct: 437 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGA 496

Query: 318 MISTYGRYGFGEVALELFQLMLRED 342
           + S   R    ++   + Q++L  D
Sbjct: 497 LHSACQRKKNVDIGERVIQMLLELD 521


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 180/572 (31%), Positives = 291/572 (50%), Gaps = 53/572 (9%)

Query: 114 SW-NSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH-GKQIHGSMI 171
           SW  S+IS + +  + +   E  S   L  + PS   F + +       H G  +H S+I
Sbjct: 16  SWVTSLISPFRNQFHQNPFPETSSTFVLNHLDPS---FLLSICGREGNLHLGSSLHASII 72

Query: 172 RSGLSLSN----VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI--------- 218
           +S   LSN    VV+ NSLI MY + G L  A  VF  M   D ISWN+LI         
Sbjct: 73  KS-FELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMVTRDTISWNALIGGFVRNGKF 131

Query: 219 ------------------------SGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVI 253
                                   SG   +GY E +L  F  M  Y    P+  T   ++
Sbjct: 132 FAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLL 191

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC+ L  L +G Q+  L +K+G  S+  + SA +D++SK  R+ ++ ++FE  +  D  
Sbjct: 192 TACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMV 251

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMA 372
            + V+++ +   G  E A+++F  ML+  I      +S VL        +  G Q HS  
Sbjct: 252 SLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFV 311

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K  F  N  V++ L+ MY+K G++D S ++F ++ +R+ V+WN+++    ++G A + L
Sbjct: 312 VKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKAL 371

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
            ++E++  EG  P  +T  ++L AC++ G V KGM    +M +++G+ P  EH+AC++D+
Sbjct: 372 QLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDM 431

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552
           L +AG L +A +    +P QPG  +W+++L A ++YGD K+ +  AE +      SP+PY
Sbjct: 432 LGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLFSETPDSPVPY 491

Query: 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            LL   Y+  G W+   R  + M++ G  K TG SWI I  ++++F  G+  H   + IY
Sbjct: 492 VLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEIDKKVHSFTVGDKMHPQTEMIY 551

Query: 613 LVLRLLTWEMEDEGCV--------YLECDKLD 636
            VL  L   M DEG V        YL+ D+ D
Sbjct: 552 GVLWELFILMVDEGYVPDKKFILYYLDDDRRD 583



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 220/415 (53%), Gaps = 13/415 (3%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL--KVFDEIPEPD 111
           N  + +Y R G   D +++FDE+  ++ ISWN  + G +++      L  +VF E+ E +
Sbjct: 88  NSLISMYDRCGKLPDAVKVFDEMVTRDTISWNALIGGFVRNGKFFAGLGMQVFYEMGERN 147

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVS---SACHGKQIH 167
           V++W ++ISG A  GY +++L++F +M   G V P+  T+  LL+  S   +   G QIH
Sbjct: 148 VITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIH 207

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
           G +++ G+  S++ +G++L+DMY K G +  A+ +F   EELD++S   +++G  ++G  
Sbjct: 208 GLIMKLGIQ-SDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCE 266

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
           E A+  F  M   G   D   +S+V+       +L  G+QV +  VK  F+ N  V +  
Sbjct: 267 EEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGL 326

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           I+++SKC  L++S+++F+++   +    N MI+ + R+G    AL+L++ M  E  +PT+
Sbjct: 327 INMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTD 386

Query: 348 FT-LSCVLSSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
            T LS + +      V+ G +F  SM    G +  +   + +++M  + G +  +     
Sbjct: 387 VTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIE 446

Query: 406 KLDKRD-LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           KL ++  L+ W  ++   +  G +       E L  E   PD   +  VLLA  Y
Sbjct: 447 KLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLFSE--TPDS-PVPYVLLANIY 498


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 283/538 (52%), Gaps = 8/538 (1%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR-PSGFTFSILLST---VS 158
           +F  + E D +SW S+I+G+A  G    AL++F +M  +G+  P+ F F  + S    + 
Sbjct: 199 LFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLG 258

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
           S  +G+QIH   ++  L   N   G SL DMY +   L  A  VF  ++  D++SWNS+I
Sbjct: 259 SLEYGEQIHSLSVKYRLD-HNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSII 317

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           + C   G    A+     MR SG  PD  T+  ++ AC     +  G+ + +  VK+G  
Sbjct: 318 NACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLD 377

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +  V ++ + ++++C     ++ +F +    D    N +++   ++   EV  +LF L+
Sbjct: 378 GDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLL 437

Query: 339 LREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            R        +L+ VLS S  +   E   Q H+   K G  ++ ++++ L++ YAK GS+
Sbjct: 438 QRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSL 497

Query: 398 DSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           D + ++F  +    D+ SW+++++G  Q+G   + LD+F  +   G+ P+ +T   VL A
Sbjct: 498 DDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTA 557

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C+  G VD+G   +S M+ E+GV+P  EH +C+IDLL +AG+L +A      MPF+P   
Sbjct: 558 CSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPFEPDIV 617

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576
           +W+++L  S  + DV++    AE ++++       Y LL   Y+  G W    R+KK MR
Sbjct: 618 MWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARLKKAMR 677

Query: 577 KNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV-YLECD 633
            +G+ K  G SW+ +K  +  F   +  H   ++IY +L L+  EM   G V  L C+
Sbjct: 678 SSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYTMLELVGMEMIKAGYVPKLSCN 735



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 222/456 (48%), Gaps = 15/456 (3%)

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
           ++A  VFDE+P  + VSW S+I+ +A    S  AL +FS M   G  P  F    L STV
Sbjct: 93  ESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFA---LGSTV 149

Query: 158 SSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            +         G+Q+H   ++S  + S++++ N+L+ MY K G++   F +F  M E D 
Sbjct: 150 RACAELGDIGVGRQVHAQAMKSE-NGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDP 208

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ISW S+I+G    G    AL  F  M   G + P+E+    V +AC  L +L+ G+Q+ +
Sbjct: 209 ISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHS 268

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           LSVK     NS    +  D++++C +LE + R+F  +D  D    N +I+     G    
Sbjct: 269 LSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSE 328

Query: 331 ALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
           A+ L   M    +RP   T+  +L + +    ++HG   HS  +K G D +  V +SL+ 
Sbjct: 329 AMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLS 388

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRI 448
           MYA+     S+ ++F +   RD+V+WN+I+    Q+        +F  LL+  LP  DRI
Sbjct: 389 MYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLF-NLLQRSLPSLDRI 447

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           +L  VL A    G+ +    V +    + G++        +ID   + G L  A+ +   
Sbjct: 448 SLNNVLSASAELGYFEMVKQVHTC-TFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEM 506

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           M        W S++   A  G  +   ++  RM +L
Sbjct: 507 MGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNL 542



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 165/321 (51%), Gaps = 4/321 (1%)

Query: 155 STVSSACHGKQIHGSMIRSGLS--LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           S + + C G  +H  ++ S     + N VL N LI MYG+      A  VF  M   + +
Sbjct: 49  SRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPV 108

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           SW S+I+    +     AL  F SM  SG +PD++ +   + AC +L ++  G+QV A +
Sbjct: 109 SWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQA 168

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           +K    S+ IV +A + ++SK   + D   LF ++   D      +I+ + + G    AL
Sbjct: 169 MKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEAL 228

Query: 333 ELFQLMLREDI-RPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           ++F+ M+ E +  P EF    V S+  +   +E+G Q HS+++K   D N+    SL +M
Sbjct: 229 QIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDM 288

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YA+   ++S+  +F  +D  DLVSWN+I+   +  G  +E + +  E+   GL PD IT+
Sbjct: 289 YARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITV 348

Query: 451 AAVLLACNYGGFVDKGMLVFS 471
             +L AC     +  G L+ S
Sbjct: 349 RGLLCACVGCDAIQHGRLMHS 369



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 39/293 (13%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C+   +    + +H +L KLG +    + N  L +Y+R       + +F E   ++
Sbjct: 351 LLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRD 410

Query: 81  CISWNICLRGLLKSDNLDTALKVFD----EIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            ++WN  L   ++  +L+   K+F+     +P  D +S N+++S  A  GY     EM  
Sbjct: 411 VVTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGY----FEMV- 465

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                      KQ+H    + GL +++ +L N LID Y K G L
Sbjct: 466 ---------------------------KQVHTCTFKVGL-VNDTMLSNGLIDTYAKCGSL 497

Query: 197 YYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  +F  M    D+ SW+SLI G   SGY   ALD F  MR  G  P+  T   V+ A
Sbjct: 498 DDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTA 557

Query: 256 CTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+++  +D+G   ++ +  + G L      S  IDL ++  RL ++ +  +Q+
Sbjct: 558 CSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQM 610


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/501 (30%), Positives = 262/501 (52%), Gaps = 43/501 (8%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI---- 218
           G+ +    +   +S+ N+   N ++  Y KLG +  A  +F  M E D++SWN+++    
Sbjct: 112 GRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYA 171

Query: 219 -SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
             GCFN   G      +   R      + ++ + V+  C KL+ L   KQV    +  GF
Sbjct: 172 KQGCFNEAIG-----LYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGF 226

Query: 278 LSNSIVLSATIDLFSKCNRLE-------------------------------DSVRLFEQ 306
           LSN ++ S+ +D +SKC  +                                 +  LF Q
Sbjct: 227 LSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQ 286

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHG 365
           +   +    + +IS Y R   G  AL+ F  M++  I P ++T S C+ +   I  ++HG
Sbjct: 287 MPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHG 346

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQ 424
            Q H   I++ F  N +V SSL++MY+K G +++S  +F  + +K+D+V WNT++  L Q
Sbjct: 347 KQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQ 406

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           NG   + + +F +++E GL PDRIT   +L AC++ G V +G+  F AM  ++GV P +E
Sbjct: 407 NGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQE 466

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HYAC+IDLL +AG   + ++    M  +P   +W ++L    I+ +++L   VAER+++L
Sbjct: 467 HYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL 526

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +  S   Y  L   YA  G+WE++ +V+++M +  I K  G SWI + N+ ++F A +  
Sbjct: 527 KPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRL 586

Query: 605 HHGGQKIYLVLRLLTWEMEDE 625
           H   ++IYL+L  L    E++
Sbjct: 587 HPLKEEIYLLLEQLARHTEED 607



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 186/372 (50%), Gaps = 37/372 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+  C   K F   K +H HL   GF    T + N  + +Y   G   +  ++FD++  +
Sbjct: 68  LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVR 127

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  SWN  L G  K  +++ A K+FD + E DVVSWN+++  YA  G  + A+ ++   +
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187

Query: 140 LQGVRPSGFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              +  + F+F+   IL   +      KQ+HG ++ +G  LSN+VL +S++D Y K G +
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGF-LSNLVLSSSIVDAYSKCGEM 246

Query: 197 ------------------------YYAFG-------VFLNMEELDIISWNSLISGCFNSG 225
                                   Y  +G       +F  M E + +SW++LISG   + 
Sbjct: 247 RCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
            G  ALD F  M   G +P++YT S  + AC  +  L  GKQV    ++  F  N+IV+S
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366

Query: 286 ATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           + ID++SKC  LE S  +F  + ++ D  V N MIS   + G GE A+++F  M+   ++
Sbjct: 367 SLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLK 426

Query: 345 PTEFTLSCVLSS 356
           P   T   +LS+
Sbjct: 427 PDRITFIVILSA 438



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 153/274 (55%), Gaps = 6/274 (2%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C+  K    AK +HG +   GF ++  L +  +D YS+ G       LFDE+  K+  +W
Sbjct: 205 CVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAW 264

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
              + G  K  ++++A ++F ++PE + VSW+++ISGYA       AL+ F+KM   G+ 
Sbjct: 265 TTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGIN 324

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P  +TFS  L   +++++  HGKQ+HG +IR+    + +V+ +SLIDMY K G+L  +  
Sbjct: 325 PEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVV-SSLIDMYSKCGMLEASCC 383

Query: 202 VFLNM-EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
           VF  M  + D++ WN++IS    +G+GE A+  F  M  SG  PD  T  ++++AC+   
Sbjct: 384 VFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSG 443

Query: 261 NLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSK 293
            + +G + F A++   G   +    +  IDL  +
Sbjct: 444 LVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGR 477



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 6/142 (4%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK-NCIS 83
           C S  +    K +HG+L +  F  +T + +  +D+YS+ G  +    +F  +  K + + 
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVV 396

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           WN  +  L ++ + + A+++F+++ E    PD +++  ++S  +  G     L  F  M 
Sbjct: 397 WNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMT 456

Query: 140 L-QGVRPSGFTFSILLSTVSSA 160
              GV P    ++ L+  +  A
Sbjct: 457 YDHGVFPDQEHYACLIDLLGRA 478


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 161/550 (29%), Positives = 291/550 (52%), Gaps = 25/550 (4%)

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F E+PQ+N ++ +  + G  K   LD A KVFD + + +  SW S+ISGY SCG  + A
Sbjct: 118 VFKEMPQRNVVAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEA 177

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           L +F +M      P     S  +  +  A +G   H       +   N++   +++  Y 
Sbjct: 178 LHLFDQM------PERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYL 231

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS- 250
             G    A+ +FL M E ++ SWN +ISGC  +   + A+  F SM      PD   +S 
Sbjct: 232 DNGCFSEAYKLFLEMPERNVRSWNIMISGCLRANRVDEAIGLFESM------PDRNHVSW 285

Query: 251 -IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             +++   + + +   ++ F L       + + +++A +D       ++++ +LF+Q+  
Sbjct: 286 TAMVSGLAQNKMIGIARKYFDLMPYKDMAAWTAMITACVDE----GLMDEARKLFDQIPE 341

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFH 369
            +    N MI  Y R  +   AL LF LMLR   RP E T++ V++S     +    Q H
Sbjct: 342 KNVGSWNTMIDGYARNSYVGEALNLFVLMLRSCFRPNETTMTSVVTSCD--GMVELMQAH 399

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           +M I  GF+ N  + ++L+ +Y+K+G + S+  +F +L  +D+VSW  +++  + +G   
Sbjct: 400 AMVIHLGFEHNTWLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGH 459

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
             L VF  +L  G+ PD +T   +L AC++ G V +G  +F ++K  Y + P  EHY+C+
Sbjct: 460 HALQVFARMLVSGIKPDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCL 519

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGC---SIWESILRASAIYGDVKLTENVAERMMDLQL 546
           +D+L +AG + +A+D+ +T+P  P     ++  ++L A  ++GDV +  ++ E++++L+ 
Sbjct: 520 VDILGRAGLVDEAMDVVATIP--PSARDEAVLVALLGACRLHGDVAIANSIGEKLLELEP 577

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            S   Y LL   YA  G+W+   +V+K MR+  + ++ G S I I  + + F  GE  H 
Sbjct: 578 SSSGGYVLLANTYAAEGQWDEFAKVRKRMRERNVKRIPGYSQIQITGKNHVFVVGERSHP 637

Query: 607 GGQKIYLVLR 616
             ++IY +L+
Sbjct: 638 QIEEIYRLLQ 647



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 50/176 (28%)

Query: 38  HGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97
           H  +  LGF  +T+L N  + LYS+ G                    ++C          
Sbjct: 399 HAMVIHLGFEHNTWLTNALITLYSKSG--------------------DLC---------- 428

Query: 98  DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV 157
            +A  VF+++   DVVSW +MI  Y++ G+  +AL++F++M + G++P   TF  LLS  
Sbjct: 429 -SARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSAC 487

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLG-----------NSLIDMYGKLGVLYYAFGV 202
           S        H  ++  G  L + + G           + L+D+ G+ G++  A  V
Sbjct: 488 S--------HVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDV 535


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 163/528 (30%), Positives = 285/528 (53%), Gaps = 8/528 (1%)

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHG 163
           +P+ ++VSW +MISG +       A+  F  M++ G  P+ F FS  +   +++ S   G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           KQ+H   ++ G+  S + +G++L DMY K G ++ A  VF  M   D +SW ++I G   
Sbjct: 61  KQMHCLALKFGIG-SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G  E AL  F  M     + D++ +   + AC  L+    G+ V +  VK+GF S+  V
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQLMLRE 341
            +A  D++SK   +E +  +F  +D     V++   +I  Y      E  L +F  + R+
Sbjct: 180 GNALTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I P EFT S ++ +      +E G+Q H+  +K  FD +  V+S L++MY K G ++ +
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQA 298

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            + F ++     ++WN+++    Q+G   + + +FE +++ G+ P+ IT  ++L  C++ 
Sbjct: 299 IQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G V++G+  F +M + YGV+PGEEHY+C+IDLL +AG+L +A +  + MPF+P    W S
Sbjct: 359 GLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCS 418

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
            L A  I+GD ++ +  AE+++ L+  +     LL+  YA   +WE +  V+  MR   +
Sbjct: 419 FLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNV 478

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            K+ G SW+ +  + + F A +  H     IY  L  L  +++  G V
Sbjct: 479 KKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV 526



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 188/394 (47%), Gaps = 36/394 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  I  C S  S +  K +H    K G  +  ++G+   D+YS+ G   D  ++F+E+P 
Sbjct: 45  SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 104

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSK 137
           K+ +SW   + G  K    + AL  F ++ + +V +  + + S   +CG    AL+    
Sbjct: 105 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG----ALK---- 156

Query: 138 MQLQGVRPSGFTFSILLSTVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
                                 AC  G+ +H S+++ G   S++ +GN+L DMY K G +
Sbjct: 157 ----------------------ACKFGRSVHSSVVKLGFE-SDIFVGNALTDMYSKAGDM 193

Query: 197 YYAFGVF-LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
             A  VF ++ E  +++S+  LI G   +   E  L  F  +R  G  P+E+T S +I A
Sbjct: 194 ESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 253

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C     L++G Q+ A  +K+ F  +  V S  +D++ KC  LE +++ F+++        
Sbjct: 254 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAW 313

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAI 373
           N ++S +G++G G+ A+++F+ M+   ++P   T   +L+       VE G   F+SM  
Sbjct: 314 NSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDK 373

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
             G        S ++++  + G +  + E   ++
Sbjct: 374 TYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM 407


>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 921

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/637 (28%), Positives = 296/637 (46%), Gaps = 71/637 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    S   A  +H H+ KL   A T + N  +D+Y + G       +F  I   +   W
Sbjct: 152 CGCLASTRLALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETIFLNIESPSLFCW 211

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  +      AL VF  +PE D VSWN++IS ++  G+    L  F +M   G +
Sbjct: 212 NSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFK 271

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T+  +LS  +S      G  +H  ++R   SL +  LG+ LIDMY K G L  A  
Sbjct: 272 PNFMTYGSVLSACASISDLKWGAHLHARILRMEHSL-DAFLGSGLIDMYAKCGCLALARR 330

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++ E + +SW   ISG    G G+ AL  F  MR +    DE+T++ ++  C+    
Sbjct: 331 VFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATILGVCSGQNY 390

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE----------------------- 298
              G+ +   ++K G  S+  V +A I ++++C   E                       
Sbjct: 391 AASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITA 450

Query: 299 -------DSVR-LFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
                  D  R  F+ +   +    N M+STY ++GF E  ++L+ LM  + ++P   T 
Sbjct: 451 FSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTF 510

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           +  + +   +  ++ G+Q  S   K G  S+  VA+S++ MY++ G I  + ++F  +  
Sbjct: 511 ATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHV 570

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           ++L+SWN +M    QNG   + ++ +E +L     PD I+  AVL               
Sbjct: 571 KNLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPDHISYVAVL--------------- 615

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                                DLL +AG L +A ++   MPF+P  ++W ++L A  I+ 
Sbjct: 616 --------------------SDLLGRAGLLNQAKNLIDGMPFKPNATVWGALLGACRIHH 655

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           D  L E  A+++M+L +     Y LL   YA  G  E +  ++K+M+  GI K  GCSWI
Sbjct: 656 DSILAETAAKKLMELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCSWI 715

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            + NR++ F   E  H    K+Y+ L  +  ++ED G
Sbjct: 716 EVDNRVHVFTVDETSHPQINKVYVKLEEMMKKIEDTG 752



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 152/590 (25%), Positives = 258/590 (43%), Gaps = 60/590 (10%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +H  L   G +A  +L N  L +YS  G  DD  ++F E    N  +WN  L     
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHVYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 94  SDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKM------QLQGVRP 145
           S  +  A  +FDE+P    D VSW +MISGY   G   ++++ F  M       +Q   P
Sbjct: 83  SGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSIKTFMSMLRDSNHDIQNCDP 142

Query: 146 SGFTFSI-LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             +T ++     ++S     Q+H  +I+  L  +   + NSL+DMY K G +  A  +FL
Sbjct: 143 FSYTCTMKACGCLASTRLALQLHAHVIKLHLG-AQTCIQNSLVDMYIKCGAITLAETIFL 201

Query: 205 NME-------------------------------ELDIISWNSLISGCFNSGYGELALDQ 233
           N+E                               E D +SWN+LIS     G+G   L  
Sbjct: 202 NIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLST 261

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M   G+ P+  T   V++AC  + +L  G  + A  +++    ++ + S  ID+++K
Sbjct: 262 FVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAK 321

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  L  + R+F  L   +       IS   ++G G+ AL LF  M +  +   EFTL+ +
Sbjct: 322 CGCLALARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATI 381

Query: 354 LSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           L           G   H  AIKSG DS+  V ++++ MYA+ G  + ++  F  +  RD 
Sbjct: 382 LGVCSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDT 441

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           +SW  ++   +QNG        F+ + E  +    IT  ++L      GF ++GM ++  
Sbjct: 442 ISWTAMITAFSQNGDIDRARQCFDMMPERNV----ITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP---FQPGCSIWESILRASAIYG 529
           M+ +  V P    +A  I        +     + S +         S+  SI+   +  G
Sbjct: 498 MRSK-AVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCG 556

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG-------RWEAIVRVK 572
            +K    V +    + + + + ++ +  A+A  G        +EA++R +
Sbjct: 557 QIKEARKVFD---SIHVKNLISWNAMMAAFAQNGLGNKAIETYEAMLRTE 603



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 66/371 (17%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S     +   +H  + ++  +   +LG+  +D+Y++ G      ++F+ + ++N
Sbjct: 280 VLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQN 339

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW   + G+                               A  G  D AL +F++M+ 
Sbjct: 340 QVSWTCFISGV-------------------------------AQFGLGDDALALFNQMRQ 368

Query: 141 QGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG--- 194
             V    FT + +L   S    A  G+ +HG  I+SG+  S+V +GN++I MY + G   
Sbjct: 369 ASVVLDEFTLATILGVCSGQNYAASGELLHGYAIKSGMD-SSVPVGNAIITMYARCGDTE 427

Query: 195 ------------------VLYYAFG----------VFLNMEELDIISWNSLISGCFNSGY 226
                              +  AF            F  M E ++I+WNS++S     G+
Sbjct: 428 KASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGF 487

Query: 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
            E  +  +  MR     PD  T +  I AC  L  +  G QV +   K G  S+  V ++
Sbjct: 488 SEEGMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANS 547

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            + ++S+C +++++ ++F+ +   +    N M++ + + G G  A+E ++ MLR + +P 
Sbjct: 548 IVTMYSRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPD 607

Query: 347 EFTLSCVLSSI 357
             +   VLS +
Sbjct: 608 HISYVAVLSDL 618


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 280/508 (55%), Gaps = 8/508 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +S  L  A  +FD++P    V+WN++I G+A     D A+  F++M   GV P+  + S 
Sbjct: 59  RSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSS 118

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L     + +A  G  +H   +R G   ++VV+G +L+DMY K   L  A  VF  MEE 
Sbjct: 119 VLVACVRLENAGAGAMLHSVGLRCGF-FASVVVGTALVDMYAKCRRLGAAQQVFGEMEEK 177

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ ++ +L++G   S     A+     M  SG +P+  T S ++++     ++D GKQV 
Sbjct: 178 NVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVH 237

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G   +  VLSA + ++SKC   ED V++   +   D    N +IS     G G+
Sbjct: 238 CAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGK 297

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A + F  M R       FT + +L +I     +  G Q H++ +K G+DS   V +SL+
Sbjct: 298 EAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLI 357

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYA+ G+I  S  +F+ ++  +LVSWN++M G  Q+G   E +++FE++    + PD I
Sbjct: 358 SMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHI 417

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE-YGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           T  +VL AC++ G VDKG+  F+ MK++ Y V    +HYAC++DLL +AG L +A  + +
Sbjct: 418 TFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLIN 477

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +PG S++ ++L A  I+G++++   V++R+M+L       +  L+ A+A  GRW  
Sbjct: 478 GMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGN 537

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRI 595
              +++ M   GI K    SW  I++++
Sbjct: 538 AAEIRETMSGKGIVKEP--SWSRIEDQM 563



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 188/384 (48%), Gaps = 5/384 (1%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           Q H +  + G S SN     +L+  Y +   L  A  +F  M     ++WN+LI G   S
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
              +LA+  F  M  +G SP   ++S V+ AC +L N   G  + ++ ++ GF ++ +V 
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVG 151

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A +D+++KC RL  + ++F +++  + A    +++ +        A+ L + M R  + 
Sbjct: 152 TALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVA 211

Query: 345 PTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T S +LSS   P  ++HG Q H   +K G + +  V S+L+ MY+K G  +   ++
Sbjct: 212 PNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKV 271

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
            + +  +D VS+N+++ GL+  GR  E    F E+   G   D  T A++L A      +
Sbjct: 272 QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSL 331

Query: 464 DKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            +G  V +  +K  Y  +   ++   +I +  + G +G++  +  +M   P    W S++
Sbjct: 332 LEGRQVHTLILKIGYDSVVDVQN--SLISMYARHGAIGESNGVFISME-APNLVSWNSLM 388

Query: 523 RASAIYGDVKLTENVAERMMDLQL 546
              A +G  K    + E+M  L +
Sbjct: 389 SGCAQHGHGKEVVEMFEQMRRLHV 412



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 169/353 (47%), Gaps = 36/353 (10%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A V+  + S  S L+  C+  ++      +H    + GF A   +G   +D+Y++    
Sbjct: 106 RAGVSPTASSVSSVLVA-CVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRL 164

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
               Q+F E+ +KN                               V ++ ++++G+    
Sbjct: 165 GAAQQVFGEMEEKN-------------------------------VATFTALVTGFVLSR 193

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLG 183
               A+ +  +M+  GV P+  T+S LLS+ +S     HGKQ+H ++++ GL     VL 
Sbjct: 194 RPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVL- 252

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           ++L+ MY K G+      V +++   D +S+NS+ISG    G G+ A   F  MR  G  
Sbjct: 253 SALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTD 312

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            D +T + ++ A     +L +G+QV  L +K+G+ S   V ++ I ++++   + +S  +
Sbjct: 313 MDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGV 372

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           F  ++  +    N ++S   ++G G+  +E+F+ M R  ++P   T   VL++
Sbjct: 373 FISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTA 425



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  + K+G+++   + N  + +Y+R G   +   +F  +   N +SWN  + G  + 
Sbjct: 335 RQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQH 394

Query: 95  DNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
            +    +++F+++     +PD +++ S+++  +  G  D  LE F+ M+ +G
Sbjct: 395 GHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 446


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 280/508 (55%), Gaps = 8/508 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +S  L  A  +FD++P    V+WN++I G+A     D A+  F++M   GV P+  + S 
Sbjct: 59  RSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVSPTASSVSS 118

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L     + +A  G  +H   +R G   ++VV+G +L+DMY K   L  A  VF  MEE 
Sbjct: 119 VLVACVRLENAGAGAMLHSVGLRCGF-FASVVVGTALVDMYAKCRRLGAAQQVFGEMEEK 177

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ ++ +L++G   S     A+     M  SG +P+  T S ++++     ++D GKQV 
Sbjct: 178 NVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVH 237

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G   +  VLSA + ++SKC   ED V++   +   D    N +IS     G G+
Sbjct: 238 CAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGK 297

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A + F  M R       FT + +L +I     +  G Q H++ +K G+DS   V +SL+
Sbjct: 298 EAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLI 357

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYA+ G+I  S  +F+ ++  +LVSWN++M G  Q+G   E +++FE++    + PD I
Sbjct: 358 SMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHI 417

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE-YGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           T  +VL AC++ G VDKG+  F+ MK++ Y V    +HYAC++DLL +AG L +A  + +
Sbjct: 418 TFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLIN 477

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +PG S++ ++L A  I+G++++   V++R+M+L       +  L+ A+A  GRW  
Sbjct: 478 GMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGN 537

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRI 595
              +++ M   GI K    SW  I++++
Sbjct: 538 AAEIRETMSGKGIVKEP--SWSRIEDQM 563



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 188/384 (48%), Gaps = 5/384 (1%)

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
           Q H +  + G S SN     +L+  Y +   L  A  +F  M     ++WN+LI G   S
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
              +LA+  F  M  +G SP   ++S V+ AC +L N   G  + ++ ++ GF ++ +V 
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVG 151

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           +A +D+++KC RL  + ++F +++  + A    +++ +        A+ L + M R  + 
Sbjct: 152 TALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVA 211

Query: 345 PTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           P   T S +LSS   P  ++HG Q H   +K G + +  V S+L+ MY+K G  +   ++
Sbjct: 212 PNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKV 271

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
            + +  +D VS+N+++ GL+  GR  E    F E+   G   D  T A++L A      +
Sbjct: 272 QMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSL 331

Query: 464 DKGMLVFS-AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            +G  V +  +K  Y  +   ++   +I +  + G +G++  +  +M   P    W S++
Sbjct: 332 LEGRQVHTLILKIGYDSVVDVQN--SLISMYARHGAIGESNGVFISME-APNLVSWNSLM 388

Query: 523 RASAIYGDVKLTENVAERMMDLQL 546
              A +G  K    + E+M  L +
Sbjct: 389 SGCAQHGHGKEVVEMFEQMRRLHV 412



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 169/353 (47%), Gaps = 36/353 (10%)

Query: 7   KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +A V+  + S  S L+  C+  ++      +H    + GF A   +G   +D+Y++    
Sbjct: 106 RAGVSPTASSVSSVLVA-CVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRL 164

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
               Q+F E+ +KN                               V ++ ++++G+    
Sbjct: 165 GAAQQVFGEMEEKN-------------------------------VATFTALVTGFVLSR 193

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLG 183
               A+ +  +M+  GV P+  T+S LLS+ +S     HGKQ+H ++++ GL     VL 
Sbjct: 194 RPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVL- 252

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           ++L+ MY K G+      V +++   D +S+NS+ISG    G G+ A   F  MR  G  
Sbjct: 253 SALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTD 312

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            D +T + ++ A     +L +G+QV  L +K+G+ S   V ++ I ++++   + +S  +
Sbjct: 313 MDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGV 372

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           F  ++  +    N ++S   ++G G+  +E+F+ M R  ++P   T   VL++
Sbjct: 373 FISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTA 425



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  + K+G+++   + N  + +Y+R G   +   +F  +   N +SWN  + G  + 
Sbjct: 335 RQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQH 394

Query: 95  DNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
            +    +++F+++     +PD +++ S+++  +  G  D  LE F+ M+ +G
Sbjct: 395 GHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 446


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/658 (26%), Positives = 306/658 (46%), Gaps = 110/658 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C +  + D  +  HG   K+G + + ++ N  L +Y++ G+  D ++LFD    
Sbjct: 146 ASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFD---- 201

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                W                      +  P+ VS+ +M+ G A  G  D AL +F++M
Sbjct: 202 -----W----------------------MSSPNEVSFTAMMGGLAQSGAVDDALRLFARM 234

Query: 139 QLQGVRPSGFTFSILLSTVSSACHG-----------KQIHGSMIRSGLSLSNVVLGNSLI 187
               +R      S +L   + AC G           + IH  ++R G   S+  +GNSLI
Sbjct: 235 SRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFD-SDQHVGNSLI 293

Query: 188 DM-------------------------------YGKLGVLYYAFGVFLNMEE----LDII 212
           DM                               YG+LG    A  V   M+E     + +
Sbjct: 294 DMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEV 353

Query: 213 SWNSLISGCFN--------------------------SGYGELALDQ-----FYSMRYSG 241
           +++++++ C                            SGYG+  L Q     F  M++  
Sbjct: 354 TYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQN 413

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PD  T++++++ C++L  L+ GKQV + SVK+   ++  V S  ID++SKC ++  + 
Sbjct: 414 VQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQ 473

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            +F  +   D    N MIS    +   E A + F+ M    + PTE + + +++S   + 
Sbjct: 474 IIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLS 533

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +  G Q H+  +K G+D N  V SSL++MYAK G++D +   F  +  +++V+WN ++ 
Sbjct: 534 SIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIH 593

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G  QNG   + +++FE +L     PD +T  AVL  C++ G VD+ +  F++M+  YG+ 
Sbjct: 594 GYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIR 653

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           P  EHY C+ID L +AG+  + + +   MP++    +WE +L A  ++ + +L E  A+ 
Sbjct: 654 PLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHHNAELGEFAAKH 713

Query: 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTF 598
           +  L   +P PY LL+  YA  GR      V+ +M   G+ K  G SW+  K+    F
Sbjct: 714 LFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGARAF 771



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 235/504 (46%), Gaps = 58/504 (11%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           +   G  A T+L NR ++LYS  G     L+ F  +P+ N  S+N  +    ++ +L  A
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TV 157
             +   +P+ + VSWN++I+  A       ALEM+  M  +G+ P+ FT + +LS    V
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
           ++   G++ HG  ++ GL   N  + N L+ MY K G +  A  +F  M   + +S+ ++
Sbjct: 156 AALDDGRRCHGLAVKVGLD-GNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK--------LRNLDKGKQVF 269
           + G   SG  + AL  F  M  S    D   +S V+ AC +         R +   + + 
Sbjct: 215 MGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIH 274

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           AL V+ GF S+  V ++ ID+++K  ++++++++FE +        N++++ YG+ G  E
Sbjct: 275 ALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYE 334

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
            ALE+  LM      P E T S +L+S                                 
Sbjct: 335 RALEVLDLMQESGFEPNEVTYSNMLASC-------------------------------- 362

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
              K   + S+  +F K+ K  + +WNT++ G  Q     +T+++F  +  + + PDR T
Sbjct: 363 --IKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTT 420

Query: 450 LAAVLLACNYGGFVDKGMLVFSA-----MKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           LA +L  C+  G ++ G  V SA     +  +  V  G      +ID+  + GQ+G A  
Sbjct: 421 LAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASG------LIDMYSKCGQVGIA-Q 473

Query: 505 ITSTMPFQPGCSIWESILRASAIY 528
           I   M  +     W S++   AI+
Sbjct: 474 IIFNMMTERDVVCWNSMISGLAIH 497



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 55/244 (22%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY S +I+ C    S    + IH  + K G++ + Y+G+  +D+Y++ G  DD    F+ 
Sbjct: 521 SYAS-MINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNC 579

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
           +  KN ++W                               N MI GYA  G+ + A+E+F
Sbjct: 580 MIVKNIVAW-------------------------------NEMIHGYAQNGFGEKAVELF 608

Query: 136 SKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN----------- 184
             M     +P   TF  +L+  S        H  ++   ++  N +  N           
Sbjct: 609 EYMLTTKQKPDSVTFIAVLTGCS--------HSGLVDEAIAYFNSMESNYGIRPLVEHYT 660

Query: 185 SLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYS 240
            LID  G+ G       V   M  + D I W  L++ C    N+  GE A    + +   
Sbjct: 661 CLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPK 720

Query: 241 GYSP 244
             SP
Sbjct: 721 NPSP 724


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/505 (30%), Positives = 271/505 (53%), Gaps = 12/505 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +   +DTA ++F EI   D+V+W+++I+ +   GY   AL +F  MQ +G++ +     I
Sbjct: 35  RCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKV---I 91

Query: 153 LLST------VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           LLS+      VSS   GK +H   +++ + L ++ +G +L+ MY K G    A  +F  M
Sbjct: 92  LLSSLPACAEVSSLKLGKSMHCCAVKANVDL-DISVGTALVSMYAKCGFFALALTLFNRM 150

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
              D+++WN++I+G    G    AL+ F+ ++ S  +P+  T+  ++ A   L +LD+G 
Sbjct: 151 PCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGS 210

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRY 325
            +    +K GF S   V +A ID+++KC  L  +  LF +   R D    NVMI+ Y   
Sbjct: 211 CIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHS 270

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G    A   F  M  E+I+P   T+  VL ++  +  +  G   H+  I+ GF S   V 
Sbjct: 271 GHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVG 330

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           + L++MYAK G +D S +IF ++  +D VSWN ++ G   +GR +  +++F  + +  + 
Sbjct: 331 NCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIR 390

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D  +   VL AC + G + +G  +F +M +++ + P  EHYAC+ DLL +AG   + +D
Sbjct: 391 LDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLD 450

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +  +MP +P   +W ++L AS ++ +V+L E     +  L+  +   Y+ L+  YA  GR
Sbjct: 451 LIKSMPMEPDAGVWGALLGASTMHSNVQLAEFALHHLDKLEHKNLTHYAALSNTYARSGR 510

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWI 589
           W  +   +  + K G+ K  G SW+
Sbjct: 511 WADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 186/386 (48%), Gaps = 5/386 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G +IH    + G+  S+V +   ++ MY + G +  A  +F  ++  D+++W+++I+   
Sbjct: 7   GTEIHDFARQQGID-SDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFV 65

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            SGY + AL  F SM+  G   ++  +   + AC ++ +L  GK +   +VK     +  
Sbjct: 66  QSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDIS 125

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A + +++KC     ++ LF ++   D    N MI+ Y + G    ALE+F  +   +
Sbjct: 126 VGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSE 185

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           + P   T+  +L +   +  ++ GS  H   IK GF+S   V ++L++MYAK GS+  + 
Sbjct: 186 LNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAE 245

Query: 402 EIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            +F +   ++D VSWN ++ G   +G A +    F ++  E + P+ +T+  VL A  + 
Sbjct: 246 FLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHL 305

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
             +  GM    A     G         C+ID+  + G L  +  I   M  +   S W  
Sbjct: 306 SALRAGM-TLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVS-WNV 363

Query: 521 ILRASAIYGDVKLTENVAERMMDLQL 546
           +L   A++G       +  RM D ++
Sbjct: 364 MLAGYAVHGRGSCAIELFSRMQDSEI 389



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 36/243 (14%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP-QKNCISWNICLR 89
            D    IHG + K GF +  ++    +D+Y++ G+      LF     +K+ +SWN+   
Sbjct: 206 LDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNV--- 262

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                       MI+GY   G++  A   F +M+L+ ++P+  T
Sbjct: 263 ----------------------------MIAGYMHSGHAIDAFSAFCQMKLENIQPNIVT 294

Query: 150 FSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
              +L  V   S+   G  +H  +IR G   S   +GN LIDMY K G L ++  +F  M
Sbjct: 295 IVTVLPAVAHLSALRAGMTLHAYVIRMGFQ-SKTPVGNCLIDMYAKCGWLDHSEKIFHEM 353

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
           +  D +SWN +++G    G G  A++ F  M+ S    D ++   V++AC     + +G+
Sbjct: 354 KNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGR 413

Query: 267 QVF 269
           ++F
Sbjct: 414 KIF 416



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 111/212 (52%), Gaps = 7/212 (3%)

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           +R L +G ++   + + G  S+  V +  + ++++C  ++ + +LF+++   D    + +
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP----IPPVEHGSQFHSMAIK 374
           I+ + + G+ + AL LF+ M  E ++  +  L   LSS+P    +  ++ G   H  A+K
Sbjct: 61  IAAFVQSGYPQEALSLFRSMQNEGLQANKVIL---LSSLPACAEVSSLKLGKSMHCCAVK 117

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +  D +  V ++L+ MYAK G    +  +F ++  +D+V+WN ++ G  Q G     L++
Sbjct: 118 ANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEM 177

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           F +L    L P+  T+  +L A      +D+G
Sbjct: 178 FHKLQLSELNPNSGTMVGLLPAFALLNDLDQG 209



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 35/187 (18%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           T+H ++ ++GF + T +GN  +D+Y++ G  D   ++F E+  K+ +SWN+         
Sbjct: 313 TLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNV--------- 363

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
                                 M++GYA  G    A+E+FS+MQ   +R   F+F  +LS
Sbjct: 364 ----------------------MLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLS 401

Query: 156 TVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDI 211
               A     G++I  SM +      ++     + D+ G+ G+      +  +M  E D 
Sbjct: 402 ACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDA 461

Query: 212 ISWNSLI 218
             W +L+
Sbjct: 462 GVWGALL 468


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/513 (31%), Positives = 282/513 (54%), Gaps = 12/513 (2%)

Query: 85  NICLRGLL----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N+ L GLL    K   + +A KVF++I   +VV W SMI+GY      +  L +F++M+ 
Sbjct: 176 NVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRE 235

Query: 141 QGVRPSGFTFSILL--STVSSACH-GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V  + +T+  L+   T  SA H GK  HG +++SG+ LS+ ++  SL+DMY K G + 
Sbjct: 236 NNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLV-TSLLDMYVKCGDIS 294

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF     +D++ W ++I G  ++G    AL  F  M+     P+  TI+ V++ C 
Sbjct: 295 NARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCG 354

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            + NL+ G+ V  LS+KVG    ++  +A + +++KC +  D+  +FE     D    N 
Sbjct: 355 LIENLELGRSVHGLSIKVGIWDTNVA-NALVHMYAKCYQNRDAKYVFEMESEKDIVAWNS 413

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +IS + + G    AL LF  M  E + P   T++ + S+   +  +  GS  H+ ++K G
Sbjct: 414 IISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLG 473

Query: 377 F--DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           F   S+  V ++L++ YAK G   S+  IF  +++++ ++W+ ++ G  + G    +L++
Sbjct: 474 FLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLEL 533

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           FEE+L++   P+  T  ++L AC + G V++G   FS+M ++Y   P  +HY C++D+L 
Sbjct: 534 FEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLA 593

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG+L +A+DI   MP QP    + + L    ++    L E V ++M+DL       Y L
Sbjct: 594 RAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVL 653

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587
           ++  YA  GRW     V+ +M++ G++K+ G S
Sbjct: 654 VSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHS 686



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 205/434 (47%), Gaps = 43/434 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI  C    +    K  HG L K G    + L    LD+Y + G                
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCG---------------- 291

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          ++  A +VF+E    D+V W +MI GY   G  + AL +F KM+ 
Sbjct: 292 ---------------DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKG 336

Query: 141 QGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             ++P+  T + +LS    + +   G+ +HG  I+ G+  +NV   N+L+ MY K     
Sbjct: 337 VEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNV--ANALVHMYAKCYQNR 394

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF    E DI++WNS+ISG   +G    AL  F+ M     +P+  T++ + +AC 
Sbjct: 395 DAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACA 454

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVL--SATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            L +L  G  + A SVK+GFL++S V   +A +D ++KC   + +  +F+ ++  +    
Sbjct: 455 SLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITW 514

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQ-FHSMAI 373
           + MI  YG+ G    +LELF+ ML++  +P E T + +LS+      V  G + F SM  
Sbjct: 515 SAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYK 574

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETL 432
              F  +    + +++M A+ G ++ + +I  K+  + D+  +   + G   + R     
Sbjct: 575 DYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGE 634

Query: 433 DVFEELLEEGLPPD 446
            V +++L+  L PD
Sbjct: 635 IVIKKMLD--LHPD 646


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/541 (30%), Positives = 279/541 (51%), Gaps = 27/541 (4%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-----KQIHG 168
           SW   I   AS G   +A+ +F +M+      S    S+  +  S A  G       +H 
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG--------------------VFLNMEE 208
             IRSG S ++    N+L+++  KL   ++ FG                    VF  M E
Sbjct: 74  LAIRSG-SFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 132

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D +SWN+LI GC      + AL     M   G+ PD +T+S V+    +  ++ +G  V
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 192

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
              ++K GF ++  V S+ ID+++ C +++ S+++F+     D  + N M++ Y + G  
Sbjct: 193 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 252

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E AL +F+ ML+  +RP   T S ++ +   +  +  G Q H+  I++ F+ N  ++SSL
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSL 312

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MY K G++D +  +F  +   D+VSW  ++MG   +G   E   +FE +    + P+ 
Sbjct: 313 IDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNH 372

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           IT  AVL AC++ G VD G   F++M  +YG +P  EH A + D L +AG L +A +  S
Sbjct: 373 ITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFIS 432

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            M  +P  S+W ++LRA  ++ +  L E VA+++ +L+  S   + +L+  Y+  GRW  
Sbjct: 433 EMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNE 492

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
             +++K MR  G+ K   CSWI +KN+++ F A +  H    +I   L + + +M  +G 
Sbjct: 493 AAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGY 552

Query: 628 V 628
           V
Sbjct: 553 V 553



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 173/357 (48%), Gaps = 7/357 (1%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G L+S   ++  KVFDE+ E D VSWN++I G A       AL M  +M   G  P  FT
Sbjct: 113 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFT 172

Query: 150 FSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S +L   +       G  +HG  I++G   ++V +G+SLIDMY     + Y+  VF + 
Sbjct: 173 LSTVLPIFAECADIKRGMVVHGYAIKNGFD-NDVFVGSSLIDMYANCTQMDYSMKVFDSF 231

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D + WNS+++G   +G  E AL  F  M  +G  P   T S +I A   L  L  GK
Sbjct: 232 SDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGK 291

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  ++  F  N  + S+ ID++ KC  ++ + R+F  +   D      MI  Y  +G
Sbjct: 292 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 351

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVA 384
               A  LF+ M   +++P   T   VL++      V++G + F+SM+ + GF  +    
Sbjct: 352 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 411

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
           ++L +   + G +D +     ++  +   S W+T++     +       +V +++ E
Sbjct: 412 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFE 468



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 36/276 (13%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
            +HG+  K GF+   ++G+  +D+Y+     D  +++FD     + + WN          
Sbjct: 191 VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWN---------- 240

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
                                SM++GYA  G  + AL +F +M   GVRP   TFS L+ 
Sbjct: 241 ---------------------SMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP 279

Query: 156 T---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
               +S    GKQ+H  +IR+  +  N+ + +SLIDMY K G +  A  VF  ++  DI+
Sbjct: 280 AFGNLSLLRLGKQLHAYLIRARFN-DNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIV 338

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-AL 271
           SW ++I G    G    A   F  M      P+  T   V+ AC+    +D G + F ++
Sbjct: 339 SWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSM 398

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           S + GF+ +    +A  D   +   L+++     ++
Sbjct: 399 SNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEM 434



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 35/193 (18%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
             K +H +L +  FN + ++ +  +D+Y + G  D   ++F+ I                
Sbjct: 289 LGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQS-------------- 334

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                            PD+VSW +MI GYA  G +  A  +F +M+L  V+P+  TF  
Sbjct: 335 -----------------PDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLA 377

Query: 153 LLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L+  S A    +G +   SM      + ++    +L D  G+ G L  A+     M+  
Sbjct: 378 VLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIK 437

Query: 210 DIIS-WNSLISGC 221
              S W++L+  C
Sbjct: 438 PTSSVWSTLLRAC 450


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 179/614 (29%), Positives = 308/614 (50%), Gaps = 41/614 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  CLS       + +H  + K+GF    Y+    + LYSRFG                
Sbjct: 156 VLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGA--------------- 197

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           ++ A KVF ++P  DV SWN+MISG+   G    AL +  +M+ 
Sbjct: 198 ----------------VEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKT 241

Query: 141 QGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           + V+    T S +L   + +     G  +H  +I+ GL  S+V + N+LI+MY K G L 
Sbjct: 242 EEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLE-SDVFVSNALINMYSKFGRLQ 300

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF  ME  D++SWNS+I+    +     AL  F  M + G  PD  T+  + +   
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVL-SATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           +L +   G+ V    V+  +L   IV+ +A +++++K   ++ +  +FEQL   D    N
Sbjct: 361 QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWN 420

Query: 317 VMISTYGRYGFGEVALELFQLMLR-EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            +I+ Y + G    A++ + +M     I P + T   +L +   +  ++ G + H   IK
Sbjct: 421 TLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK 480

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           +    +  VA+ L++MY K G ++ +  +F ++ +   V WN I+  L  +G   + L +
Sbjct: 481 NCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQL 540

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++  +G+  D IT  ++L AC++ G VD+    F  M++EY + P  +HY C++DL  
Sbjct: 541 FKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFG 600

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           +AG L KA ++ S MP Q   SIW ++L A  I+G+ +L    ++R++++   +   Y L
Sbjct: 601 RAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVL 660

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           L+  YA  G+WE  V+V+ + R  G+ K  G S + + + +  F AG   H    +IY  
Sbjct: 661 LSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEE 720

Query: 615 LRLLTWEMEDEGCV 628
           LR+L  +M+  G V
Sbjct: 721 LRVLNAKMKSLGYV 734



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/440 (29%), Positives = 227/440 (51%), Gaps = 11/440 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCG-YSDYALEMFSKMQLQGVRPSGFTFSILL 154
           +L  +   F  I   ++ SWNSM+S Y   G Y D    +   + L GVRP  +TF  +L
Sbjct: 98  DLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVL 157

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
               S   G+++H  +++ G    +V +  SLI +Y + G +  A  VF++M   D+ SW
Sbjct: 158 KACLSLADGEKMHCWVLKMGFE-HDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSW 216

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++ISG   +G    AL     M+      D  T+S ++  C +  ++  G  V    +K
Sbjct: 217 NAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK 276

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G  S+  V +A I+++SK  RL+D+ R+F+ ++  D    N +I+ Y +      AL  
Sbjct: 277 HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGF 336

Query: 335 FQLMLREDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMY 391
           F+ ML   +RP   T+   L+SI   +     G   H   ++  + + + V+ ++L+ MY
Sbjct: 337 FKEMLFVGMRPDLLTV-VSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMY 395

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDRIT 449
           AK GSID +  +F +L  RD++SWNT++ G  QNG A+E +D +  ++EEG  + P++ T
Sbjct: 396 AKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIVPNQGT 454

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
             ++L A ++ G + +GM +   + +   +        C+ID+  + G+L  A+ +   +
Sbjct: 455 WVSILPAYSHVGALQQGMKIHGRLIKN-CLFLDVFVATCLIDMYGKCGRLEDAMSLFYEI 513

Query: 510 PFQPGCSIWESILRASAIYG 529
           P Q     W +I+ +  I+G
Sbjct: 514 P-QETSVPWNAIISSLGIHG 532



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 163/321 (50%), Gaps = 14/321 (4%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           F+++  + ++    KQ+H  ++  G +  +VVL   L+ +Y  LG L  +   F +++  
Sbjct: 54  FNLVFRSCTNINVAKQLHALLLVLGKA-QDVVLLTQLVTLYATLGDLSLSSTTFKHIQRK 112

Query: 210 DIISWNSLISGCFNSGYGELALDQFYS-MRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           +I SWNS++S     G    ++D     +  SG  PD YT   V+ AC  L +   G+++
Sbjct: 113 NIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKM 169

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
               +K+GF  +  V ++ I L+S+   +E + ++F  +   D    N MIS + + G  
Sbjct: 170 HCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNV 229

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVA 384
             AL +   M  E+++    T+S   S +PI      V  G   H   IK G +S+  V+
Sbjct: 230 AEALRVLDRMKTEEVKMDTVTVS---SMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVS 286

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+ MY+K G +  +  +F  ++ RDLVSWN+I+    QN      L  F+E+L  G+ 
Sbjct: 287 NALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMR 346

Query: 445 PDRITLAAVLLACNYGGFVDK 465
           PD +T+  V LA  +G   D+
Sbjct: 347 PDLLTV--VSLASIFGQLSDR 365



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 6/178 (3%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
             Q H++ +  G   + V+ + L+ +YA  G +  S+  F  + ++++ SWN+++    +
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 425 NGRAAETLDVFEELLE-EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
            GR  +++D   ELL   G+ PD  T   VL AC      +K       M  E+ V    
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVA- 185

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
              A +I L  + G +  A  +   MP +   S W +++      G+V     V +RM
Sbjct: 186 ---ASLIHLYSRFGAVEVAHKVFVDMPVRDVGS-WNAMISGFCQNGNVAEALRVLDRM 239


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 291/552 (52%), Gaps = 30/552 (5%)

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           D L LFD++PQ+N +S+N  + G +K+  +  A KVFD +PE +VVSW SM+ GY   G 
Sbjct: 70  DALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGM 129

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL------SNVV 181
            + A ++F +M  + V     ++++++        G  +  S I     L       +VV
Sbjct: 130 VEEAEKLFWEMPRRNV----VSWTVMI--------GGLLKESRIDDAKKLFDMIPEKDVV 177

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +  ++I  Y ++G L  A  +F  M+  ++ +W +++SG   +G  ++A   F  M    
Sbjct: 178 VVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP--- 234

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              +E + + ++   T+   + +  ++F A+ VK     N ++L      F     +  +
Sbjct: 235 -ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQ-----FGLAGEMHRA 288

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPI 359
             +FE +   D    N MI  + R G    AL LF  M RE +     ++  VLS    +
Sbjct: 289 RMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASL 348

Query: 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             ++HG Q H+  ++S FD +  VAS L+ MY K G +  +  IF +   +D+V WN+++
Sbjct: 349 ASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMI 408

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            G +Q+G   E L+VF ++   G+ PD +T   VL AC+Y G V +G  +F AMK  Y V
Sbjct: 409 TGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQV 468

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539
            PG EHYAC++DLL +AG++ +A+++   MP +P   +W ++L A   +  + L E   E
Sbjct: 469 EPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVE 528

Query: 540 RMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599
           ++  L+  +  PY LL+  YA +GRW  +  ++K + +  I K  GCSWI ++ +++ F 
Sbjct: 529 KLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVEKKVHMFT 587

Query: 600 AGELQHHGGQKI 611
            G+ + H  Q +
Sbjct: 588 GGDSKSHPEQHM 599



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 42/229 (18%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  S D  + +H  L +  F+   Y+ +  + +Y + G       +F+    K+ + W
Sbjct: 345 CASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMW 404

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               SMI+GY+  G  + AL +F  M   GV+
Sbjct: 405 N-------------------------------SMITGYSQHGLGEEALNVFHDMCSSGVQ 433

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----SLIDMYGKLGVLYYA 199
           P   TF  +LS  S +  GK   G  I   +  +  V         ++D+ G+ G +  A
Sbjct: 434 PDEVTFIGVLSACSYS--GKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEA 491

Query: 200 FGVFLNME-ELDIISWNSLISGCFNS---GYGELALDQFYSMRYSGYSP 244
             +   M  E D I W +L+  C N       E+A+++   +      P
Sbjct: 492 MELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGP 540


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/609 (27%), Positives = 302/609 (49%), Gaps = 49/609 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++   ++  +   A  +H   +KLG + + ++G+  +D YS      D   +F+ I +
Sbjct: 166 TTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVR 225

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           K                               D V W +M+S Y+     + A       
Sbjct: 226 K-------------------------------DAVVWTAMVSCYSENDCPENA------- 247

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
                    F  +   S ++ +C  + IHG  I++ L+ +   +G +L+DMY K G +  
Sbjct: 248 ---------FRCAQSCSLLAISCARQGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKD 297

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A   F  +   D+I  + +IS    S   E A + F  +  S   P+EY++S V+ ACT 
Sbjct: 298 ARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN 357

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           +  LD GKQ+   ++K+G  S+  V +A +D ++KCN ++ S+++F  L   +    N +
Sbjct: 358 MVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTI 417

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGF 377
           +  + + G GE AL +F  M    +  T+ T S VL +      + H  Q H    KS F
Sbjct: 418 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 477

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEE 437
           +++ V+ +SL++ YAK G I  + ++F  L +RD++SWN I+ G   +G+AA+ L++F+ 
Sbjct: 478 NNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR 537

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497
           + +  +  + IT  A+L  C   G V+ G+ +F +M+ ++G+ P  EHY CI+ LL +AG
Sbjct: 538 MNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAG 597

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557
           +L  A+     +P  P   +W ++L +  I+ +V L    AE++++++      Y LL+ 
Sbjct: 598 RLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSN 657

Query: 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRL 617
            YA  G  + +  ++K MR  G+ KV G SW+ IK  I+ F+ G + H   + I  +L  
Sbjct: 658 MYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEW 717

Query: 618 LTWEMEDEG 626
           L  +   EG
Sbjct: 718 LNLKTSREG 726



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 125/533 (23%), Positives = 243/533 (45%), Gaps = 65/533 (12%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT--YLGNRCLDLYSRFGTSDDVLQLFDE 75
           C++ +  C++       + +HGH+ + G       +  N  L++Y + G           
Sbjct: 62  CARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP---------- 111

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135
                                L +A ++FD +PE ++VS+ +++  +A  G  + A  +F
Sbjct: 112 ---------------------LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF 150

Query: 136 SKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
            +++ +G   + F  + +L     + +A     +H    + G    N  +G+ LID Y  
Sbjct: 151 RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHD-HNAFVGSGLIDAYSL 209

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
             ++  A  VF  +   D + W +++S C++    +   + F   +         + S++
Sbjct: 210 CSLVSDAEHVFNGIVRKDAVVWTAMVS-CYSE--NDCPENAFRCAQ---------SCSLL 257

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
             +C +       + +   ++K    +   V  A +D+++KC  ++D+   FE +   D 
Sbjct: 258 AISCAR-------QGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDV 310

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSM 371
            +++ MIS Y +    E A ELF  ++R  + P E++LS VL +   +  ++ G Q H+ 
Sbjct: 311 ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNH 370

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
           AIK G +S+  V ++LM+ YAK   +DSS +IF  L   + VSWNTI++G +Q+G   E 
Sbjct: 371 AIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEA 430

Query: 432 LDVFEELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMKEEYG--VMPGEEHYAC 488
           L VF E+    +P  ++T ++VL AC +       G +  S  K  +    + G      
Sbjct: 431 LSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNS---- 486

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +ID   + G +  A+ +   +  +   S W +I+   A++G       + +RM
Sbjct: 487 LIDTYAKCGYIRDALKVFQHLMERDIIS-WNAIISGYALHGQAADALELFDRM 538


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/593 (29%), Positives = 305/593 (51%), Gaps = 46/593 (7%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           L  C++  D+ +       A+ +H +  K+G    H  +GN  +D+Y + G+        
Sbjct: 247 LPVCAETEDKVM-------ARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEK------ 293

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                     + KVFDEI E +V+SWN++I+ ++  G    AL+
Sbjct: 294 -------------------------ASKKVFDEIDERNVISWNAIITSFSFRGKYMDALD 328

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           +F  M  +G+RP+  T S +L  +        G ++HG  ++  +  S+V + NSLIDMY
Sbjct: 329 VFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIE-SDVFISNSLIDMY 387

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G    A  +F  M   +I+SWN++I+    +     A++    M+  G +P+  T +
Sbjct: 388 AKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFT 447

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ AC +L  L+ GK++ A  ++VG   +  V +A  D++SKC  L  +  +F    R 
Sbjct: 448 NVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVR- 506

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           D    N++I  Y R      +L LF  M    +RP   +   V+S+   +  +  G + H
Sbjct: 507 DEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIH 566

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
            + ++  F ++  VA+SL+++Y + G ID +T++F  +  +D+ SWNT+++G    G   
Sbjct: 567 GLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELD 626

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
             +++FE + E+G+  D ++  AVL AC++GG ++KG   F  M  +  + P   HYAC+
Sbjct: 627 TAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMC-DLNIEPTHTHYACM 685

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG + +A D+   +   P  +IW ++L A  I+G+++L    AE + +L+    
Sbjct: 686 VDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHC 745

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
             Y LL+  YA   RW+   +V+++M+  G  K  GCSW+ + + ++ F  GE
Sbjct: 746 GYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGE 798



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/531 (25%), Positives = 245/531 (46%), Gaps = 52/531 (9%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C  F      + +HG  FKLGF+   ++GN  L  Y   G   D                
Sbjct: 147 CSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGD---------------- 190

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM--QLQG 142
                          A+KVFDE+PE D VSWN++I   +  G+ + AL  F  M     G
Sbjct: 191 ---------------AMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPG 235

Query: 143 VRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           ++P   T   +L   +        + +H   ++ GL   +V +GN+L+D+YGK G    +
Sbjct: 236 IQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKAS 295

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             VF  ++E ++ISWN++I+     G    ALD F  M   G  P+  TIS ++    +L
Sbjct: 296 KKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGEL 355

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
                G +V   S+K+   S+  + ++ ID+++K      +  +F ++   +    N MI
Sbjct: 356 GLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMI 415

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           + + R      A+EL + M  +   P   T + VL +   +  +  G + H+  I+ G  
Sbjct: 416 ANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSS 475

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
            +  V+++L +MY+K G ++ +  +F  +  RD VS+N +++G ++   + E+L +F E+
Sbjct: 476 LDLFVSNALTDMYSKCGCLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEM 534

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA------CIIDL 492
              G+ PD ++   V+ AC    F+ +G       KE +G++  +  +        ++DL
Sbjct: 535 RLLGMRPDIVSFMGVVSACANLAFIRQG-------KEIHGLLVRKLFHTHLFVANSLLDL 587

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
             + G++  A  +   +  +   S W +++    + G++    N+ E M +
Sbjct: 588 YTRCGRIDLATKVFYCIQNKDVAS-WNTMILGYGMRGELDTAINLFEAMKE 637



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 165/342 (48%), Gaps = 32/342 (9%)

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-----VLYYA 199
           P+      L  T+S     KQ+H   +  G    +V L  SLI  Y   G     +L + 
Sbjct: 38  PNLLQLCTLCDTLSQT---KQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQ 94

Query: 200 FGVFLNMEELDIISWNSLI-----SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
             V  +        WN+LI     +G F+ G+G      + +M  +G  PDE T   V+ 
Sbjct: 95  HSVAYSRSAF---LWNTLIRANSIAGVFD-GFG-----TYNTMVRAGVKPDECTYPFVLK 145

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            C+    + KG++V  ++ K+GF  +  V +  +  +  C    D++++F+++   D   
Sbjct: 146 VCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVS 205

Query: 315 INVMISTYGRYGFGEVALELFQLML--REDIRPTEFTLSCVLSSIPIPPVEHGSQF---- 368
            N +I     +GF E AL  F++M+  +  I+P    L  V+S +P+             
Sbjct: 206 WNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQP---DLVTVVSVLPVCAETEDKVMARIV 262

Query: 369 HSMAIKSGFDSNAV-VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
           H  A+K G     V V ++L+++Y K GS  +S ++F ++D+R+++SWN I+   +  G+
Sbjct: 263 HCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGK 322

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
             + LDVF  +++EG+ P+ +T++++L      G    GM V
Sbjct: 323 YMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEV 364


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/553 (29%), Positives = 294/553 (53%), Gaps = 13/553 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           ++ +A+++FD +P P++VSW +++SG         AL  FS M   G+ P+ F  S    
Sbjct: 68  DVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAAR 127

Query: 156 TVSSACHGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             ++        Q+H   +R G   + + + ++L DMY K G+L  A  VF  M + D +
Sbjct: 128 AAAALAARHAGAQLHCVGVRLGFD-AELFVASNLADMYSKSGLLVEACRVFDQMPQKDAV 186

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +W ++I G   +G  E A+  F  MR  G    D++ +  V++A   L++    + + + 
Sbjct: 187 AWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSC 246

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV--MISTYGRYGFGE 329
            +K GF     V +A  D+++K   ++++ R+  ++D+    V++   +I  Y      E
Sbjct: 247 VMKSGFEQEVAVRNALTDMYAKAADMDNAARVV-KIDQGSLNVVSATSLIDGYIETDCIE 305

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLM 388
            AL +F  + R+ + P EFT S ++    +  + E G+Q H+  IK+   S++ V+S+L+
Sbjct: 306 KALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLL 365

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY K G I  S ++F +++    ++WN  +  L Q+G   E +  F+ +   G+ P+ I
Sbjct: 366 DMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHI 425

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           T  ++L AC++ G VD+G+  F +MK+ +G+ P  EHY+CIID+  +AG+L +A      
Sbjct: 426 TFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGE 485

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568
           MP +P    W S+L A  + G+ +L E  A+ MM L+  +   +  L+  YA  G+WE +
Sbjct: 486 MPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDV 545

Query: 569 VRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             V+K+MR N I K+ G SW+    + + F + +  H   +KIY  L  L   +++EG V
Sbjct: 546 KAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYV 605

Query: 629 ----YLECDKLDV 637
               +L C+  D 
Sbjct: 606 PDTRFLPCNLEDT 618



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 180/388 (46%), Gaps = 32/388 (8%)

Query: 43  KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102
           +LGF+A  ++ +   D+YS+ G   +  ++FD++PQK+ ++W   + G  K+ NL+ A+ 
Sbjct: 147 RLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVI 206

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH 162
            F ++    +V  +  +              + S +   G    G+              
Sbjct: 207 AFRDMRREGLVGADQHV--------------LCSVLSASGGLKDGWL------------- 239

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-LNMEELDIISWNSLISGC 221
            + IH  +++SG     V + N+L DMY K   +  A  V  ++   L+++S  SLI G 
Sbjct: 240 ARAIHSCVMKSGFE-QEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGY 298

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +   E AL  F  +R  G  P+E+T S +I  C     L++G Q+ A  +K   +S+S
Sbjct: 299 IETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDS 358

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V S  +D++ KC  +  S++LF++++       N  I+   ++G G  A+  F  M   
Sbjct: 359 FVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSS 418

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
            IRP   T   +L++      V+ G + F+SM    G +      S +++MY + G +D 
Sbjct: 419 GIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDE 478

Query: 400 STEIFVKLD-KRDLVSWNTIMMGLTQNG 426
           + +   ++  K +   W +++      G
Sbjct: 479 AEKFIGEMPVKPNAYGWCSLLGACRMRG 506



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 5/308 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ +H  ++ SG + ++  L N LI MY     +  A  +F  M   +++SW +L+SG  
Sbjct: 36  GRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLT 95

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     AL  F SM  +G  P ++ +S    A   L     G Q+  + V++GF +   
Sbjct: 96  QNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELF 155

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S   D++SK   L ++ R+F+Q+ + D      MI  Y + G  E A+  F+ M RE 
Sbjct: 156 VASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREG 215

Query: 343 -IRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            +   +  L  VLS S  +         HS  +KSGF+    V ++L +MYAK   +D++
Sbjct: 216 LVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNA 275

Query: 401 TEIFVKLDKRDL--VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             + VK+D+  L  VS  +++ G  +     + L +F EL  +G+ P+  T ++++  C 
Sbjct: 276 ARV-VKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCA 334

Query: 459 YGGFVDKG 466
               +++G
Sbjct: 335 MQALLEQG 342



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 129/280 (46%), Gaps = 37/280 (13%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            A+ IH  + K GF     + N   D+Y+                               
Sbjct: 239 LARAIHSCVMKSGFEQEVAVRNALTDMYA------------------------------- 267

Query: 93  KSDNLDTALKVFD-EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           K+ ++D A +V   +    +VVS  S+I GY      + AL MF +++ QGV P+ FTFS
Sbjct: 268 KAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFS 327

Query: 152 ILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            ++   +       G Q+H  +I++ L +S+  + ++L+DMYGK G++  +  +F  +E 
Sbjct: 328 SMIKGCAMQALLEQGAQLHAEVIKTSL-ISDSFVSSTLLDMYGKCGLISLSIQLFKEIEY 386

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG-KQ 267
              I+WN+ I+     G+G  A+  F  M  SG  P+  T   ++ AC+    +D+G K 
Sbjct: 387 HTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKY 446

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            +++    G        S  ID++ +  RL+++ +   ++
Sbjct: 447 FYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEM 486



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 47/245 (19%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C      +    +H  + K    + +++ +  LD+Y + G     +QLF EI  
Sbjct: 327 SSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEY 386

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEM 134
              I+WN  +  L +  +   A++ FD +      P+ +++ S+++  +  G  D  L+ 
Sbjct: 387 HTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKY 446

Query: 135 FSKMQ-LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           F  M+   G+ P G  +S                                  +IDMYG+ 
Sbjct: 447 FYSMKDHHGIEPKGEHYSC---------------------------------IIDMYGRA 473

Query: 194 GVLYYAFGVFLNME-ELDIISWNSLISGCF---NSGYGELALDQFYSMRYSGYSPDEYTI 249
           G L  A      M  + +   W SL+  C    N   GE+A D    +      PD   +
Sbjct: 474 GRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKL-----EPDNTGV 528

Query: 250 SIVIN 254
            + ++
Sbjct: 529 HVSLS 533


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 183/608 (30%), Positives = 308/608 (50%), Gaps = 48/608 (7%)

Query: 34  AKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            + +HGH+   G  +    +GN  +++Y++ G+  D                        
Sbjct: 332 GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIAD------------------------ 367

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                  A +VF  + + D VSWNSMI+G    G    A+E +  M+   + P  FT   
Sbjct: 368 -------ARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLIS 420

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            LS+ +S   A  G+QIHG  ++ G+ L NV + N+L+ +Y + G L     +F +M E 
Sbjct: 421 SLSSCASLKWAKLGQQIHGESLKLGIDL-NVSVSNALMTLYAETGYLNECRKIFSSMPEH 479

Query: 210 DIISWNSLISGCFNSGYGELALDQ----FYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           D +SWNS+I     S   E +L +    F + + +G   +  T S V++A + L   + G
Sbjct: 480 DQVSWNSIIGALARS---ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELG 536

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGR 324
           KQ+  L++K      +   +A I  + KC  ++   ++F ++ +R D    N MIS Y  
Sbjct: 537 KQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIH 596

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                 AL+L   ML+   R   F  + VLS+   +  +E G + H+ ++++  +S+ VV
Sbjct: 597 NELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVV 656

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG- 442
            S+L++MY+K G +D +   F  +  R+  SWN+++ G  ++G+  E L +FE +  +G 
Sbjct: 657 GSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQ 716

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
            PPD +T   VL AC++ G +++G   F +M + YG+ P  EH++C+ D+L +AG+L K 
Sbjct: 717 TPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKL 776

Query: 503 IDITSTMPFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
            D    MP +P   IW ++L A   A     +L +  AE +  L+  + + Y LL   YA
Sbjct: 777 EDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYA 836

Query: 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
             GRWE +V+ +K M+   + K  G SW+ +K+ ++ F AG+  H     IY  L+ L  
Sbjct: 837 AGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNR 896

Query: 621 EMEDEGCV 628
           +M D G V
Sbjct: 897 KMRDAGYV 904



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 230/516 (44%), Gaps = 66/516 (12%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+  H  L+K   +   YL N  ++ Y   G S    ++FDE+P +NC            
Sbjct: 20  ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNC------------ 67

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                              VSW  ++SGY+  G    AL     M  +G+  + + F  +
Sbjct: 68  -------------------VSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSV 108

Query: 154 LSTVSSACH---------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVF 203
           L     AC          G+QIHG M +   ++ + V+ N LI MY K +G + YA   F
Sbjct: 109 L----RACQEIGSVGILFGRQIHGLMFKLSYAV-DAVVSNVLISMYWKCIGSVGYALCAF 163

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI-SIVINACT----K 258
            ++E  + +SWNS+IS    +G    A   F SM+Y G  P EYT  S+V  AC+     
Sbjct: 164 GDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPD 223

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           +R L+   Q+     K G L++  V S  +  F+K   L  + ++F Q++  +   +N +
Sbjct: 224 VRLLE---QIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGL 280

Query: 319 ISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIPIPP------VEHGSQFHSM 371
           +    R  +GE A +LF  M    D+ P  + +  +LSS P         ++ G + H  
Sbjct: 281 MVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI--LLSSFPEYSLAEEVGLKKGREVHGH 338

Query: 372 AIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            I +G  D    + + L+ MYAK GSI  +  +F  +  +D VSWN+++ GL QNG   E
Sbjct: 339 VITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIE 398

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            ++ ++ +    + P   TL + L +C    +   G  +      + G+         ++
Sbjct: 399 AVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGE-SLKLGIDLNVSVSNALM 457

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
            L  + G L +   I S+MP     S W SI+ A A
Sbjct: 458 TLYAETGYLNECRKIFSSMPEHDQVS-WNSIIGALA 492



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 202/431 (46%), Gaps = 45/431 (10%)

Query: 33  FAKTIHGHLFKLGFNAHTYLGNRCLDLYSR-FGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           F + IHG +FKL +     + N  + +Y +  G+    L  F +I  KN +SW       
Sbjct: 122 FGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSW------- 174

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
                                   NS+IS Y+  G    A  +FS MQ  G RP+ +TF 
Sbjct: 175 ------------------------NSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFG 210

Query: 152 ILLSTVSSACHG-----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            L++T  S         +QI  ++ +SGL L+++ +G+ L+  + K G L YA  VF  M
Sbjct: 211 SLVTTACSLTEPDVRLLEQIMCTIQKSGL-LTDLFVGSGLVSAFAKSGSLSYARKVFNQM 269

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYS-GYSPDEYTI---SIVINACTKLRNL 262
           E  + ++ N L+ G     +GE A   F  M      SP+ Y I   S    +  +   L
Sbjct: 270 ETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGL 329

Query: 263 DKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
            KG++V    +  G +   + + +  +++++KC  + D+ R+F  +   D    N MI+ 
Sbjct: 330 KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITG 389

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSN 380
             + G    A+E ++ M R DI P  FTL   LSS   +   + G Q H  ++K G D N
Sbjct: 390 LDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLN 449

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA-AETLDVFEELL 439
             V+++LM +YA+TG ++   +IF  + + D VSWN+I+  L ++ R+  E +  F    
Sbjct: 450 VSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQ 509

Query: 440 EEGLPPDRITL 450
             G   +RIT 
Sbjct: 510 RAGQKLNRITF 520



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 227/471 (48%), Gaps = 23/471 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ-LQGVRPSGFTFS 151
           KS +L  A KVF+++   + V+ N ++ G     + + A ++F  M  +  V P  +   
Sbjct: 255 KSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYV-- 312

Query: 152 ILLSTVSSAC--------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
           ILLS+              G+++HG +I +GL    V +GN L++MY K G +  A  VF
Sbjct: 313 ILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF 372

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M + D +SWNS+I+G   +G    A++++ SMR     P  +T+   +++C  L+   
Sbjct: 373 YFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAK 432

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            G+Q+   S+K+G   N  V +A + L+++   L +  ++F  +   D    N +I    
Sbjct: 433 LGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALA 492

Query: 324 RYGFG-EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNA 381
           R       A+  F    R   +    T S VLS++      E G Q H +A+K+     A
Sbjct: 493 RSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEA 552

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
              ++L+  Y K G +D   +IF ++ ++RD V+WN+++ G   N   A+ LD+   +L+
Sbjct: 553 TTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQ 612

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAG 497
            G   D    A VL A      +++GM V +       E  V+ G    + ++D+  + G
Sbjct: 613 TGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVG----SALVDMYSKCG 668

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM-MDLQLP 547
           +L  A+   +TMP +   S W S++   A +G  +    + E M +D Q P
Sbjct: 669 RLDYALRFFNTMPVRNSYS-WNSMISGYARHGQGEEALKLFETMKLDGQTP 718



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 145/347 (41%), Gaps = 83/347 (23%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S K     + IHG   KLG + +  + N  + LY+  G  ++  ++F  +P+ + 
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 82  ISWNICLRGLLKSD-----------NLDTALKVFDEIP---------------------- 108
           +SWN  +  L +S+           N   A +  + I                       
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 541

Query: 109 -------EPDVVSWNSMISGYASCGYSDYALEMFSKM----------------------- 138
                    +  + N++I+ Y  CG  D   ++FS+M                       
Sbjct: 542 LALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLA 601

Query: 139 --------QLQ-GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSL 186
                    LQ G R   F ++ +LS  +S      G ++H   +R+ L  S+VV+G++L
Sbjct: 602 KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE-SDVVVGSAL 660

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PD 245
           +DMY K G L YA   F  M   +  SWNS+ISG    G GE AL  F +M+  G + PD
Sbjct: 661 VDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPD 720

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292
             T   V++AC+    L++G + F        +S+S  L+  I+ FS
Sbjct: 721 HVTFVGVLSACSHAGLLEEGFKHFE------SMSDSYGLAPRIEHFS 761


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 174/610 (28%), Positives = 301/610 (49%), Gaps = 38/610 (6%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   +  DF + +H  + K+ F    Y+    L +Y++ G+ +D                
Sbjct: 254 CSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVED---------------- 297

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                          A KVFD++ + +V   N+MIS +   G +  AL +++KM+     
Sbjct: 298 ---------------AKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETP 342

Query: 145 PSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              FT S LLS    V S   G+ +H  +I+  +  SNV + ++L+ MY K G    A  
Sbjct: 343 VDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQ-SNVAIQSALLTMYYKCGSTEDADS 401

Query: 202 VFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
           VF  M+E D+++W S+I+G C N  + + ALD F +M   G   D   ++ VI+A   L 
Sbjct: 402 VFYTMKERDVVAWGSMIAGFCQNRRFKD-ALDLFRAMEKEGVKADSDVMTSVISAGLGLE 460

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           N++ G  +   ++K G  S+  V  + +D++SK    E +  +F  +   +    N MIS
Sbjct: 461 NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMIS 520

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS 379
            Y   G  E+++ L   +L+        +++ VL ++  +  +  G   H+  I+    S
Sbjct: 521 CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPS 580

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           +  V ++L++MY K G +  +  IF  + +R+LV+WN+++ G   +G   E + +F+E+ 
Sbjct: 581 DLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMK 640

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
                PD +T  A++ +C++ G V++G+ +F  M+ EYGV P  EHYA ++DLL +AG+L
Sbjct: 641 RSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRL 700

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
             A      MP     S+W  +L A   + +++L E VA+ ++ ++      Y  L   Y
Sbjct: 701 DDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLY 760

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
                W+    ++  M+  G+ K  GCSWI +KNR+  F +G+       +IY  L  L 
Sbjct: 761 GEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLK 820

Query: 620 WEMEDEGCVY 629
             ME +GC Y
Sbjct: 821 SNMEGKGCSY 830



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 240/526 (45%), Gaps = 51/526 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C S  +    +TIH  +  +G  +  Y+    +++Y + G     LQ+FD++    
Sbjct: 61  LLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM---- 116

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                        S++ D+A         PD+  WN +I GY   G+ +  L  F +MQ 
Sbjct: 117 -------------SESRDSA---------PDITVWNPVIDGYFKYGHFEEGLAQFCRMQ- 153

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
                           +S    G+QIHG +IR+     +  L  +LI MY        A+
Sbjct: 154 ---------------ELSWYMAGRQIHGYIIRNMFE-GDPYLETALIGMYSSCSRPMEAW 197

Query: 201 GVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
            +F  +E   +I++WN +I G   +G  E +L+ +   +         + +    AC+  
Sbjct: 198 SLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHG 257

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
             LD G+QV    +K+ F  +  V ++ + +++K   +ED+ ++F+Q+   +  + N MI
Sbjct: 258 EVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMI 317

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFD 378
           S +   G    AL L+  M   +     FT+S +LS    +   + G   H+  IK    
Sbjct: 318 SAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQ 377

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           SN  + S+L+ MY K GS + +  +F  + +RD+V+W +++ G  QN R  + LD+F  +
Sbjct: 378 SNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAM 437

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMKEEYGVMPGEEHYAC-IIDLLCQA 496
            +EG+  D   + +V+ A      V+ G L+   A+K     +  +   AC ++D+  + 
Sbjct: 438 EKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRG---LESDVFVACSLVDMYSKF 494

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           G    A  + S+MP       W S++   +  G  +++ N+  +++
Sbjct: 495 GFAESAEMVFSSMP-NKNLVAWNSMISCYSWNGLPEMSINLLPQIL 539



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 30/368 (8%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSM 170
           S NS I      G    ALE+ SK     +  + FTF  LL T +S     HG+ IH S+
Sbjct: 22  SINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASI 81

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-----LDIISWNSLISGCFNSG 225
           +  GL  S+  +  SLI+MY K G+L  A  VF  M E      DI  WN +I G F  G
Sbjct: 82  VTMGLQ-SDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYG 140

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
           + E  L QF  M+                   +L     G+Q+    ++  F  +  + +
Sbjct: 141 HFEEGLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRNMFEGDPYLET 181

Query: 286 ATIDLFSKCNRLEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           A I ++S C+R  ++  LF +L+ R +    NVMI  +   G  E +LEL+ L   E+ +
Sbjct: 182 ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCK 241

Query: 345 PTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
               + +   ++     V + G Q H   IK  F  +  V +SL+ MYAK+GS++ + ++
Sbjct: 242 LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 301

Query: 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463
           F ++  +++   N ++     NGRA + L ++ ++     P D  T++++L  C+  G  
Sbjct: 302 FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 361

Query: 464 DKGMLVFS 471
           D G  V +
Sbjct: 362 DFGRTVHA 369



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 190/388 (48%), Gaps = 39/388 (10%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C    S+DF +T+H  + K    ++  + +  L +Y + G+++D   +F  + +
Sbjct: 349 SSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKE 408

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ ++W                                SMI+G+        AL++F  M
Sbjct: 409 RDVVAW-------------------------------GSMIAGFCQNRRFKDALDLFRAM 437

Query: 139 QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           + +GV+      + ++S    + +   G  IHG  I+ GL  S+V +  SL+DMY K G 
Sbjct: 438 EKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLE-SDVFVACSLVDMYSKFGF 496

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFN-SGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
              A  VF +M   ++++WNS+IS C++ +G  E++++    +   G+  D  +I+ V+ 
Sbjct: 497 AESAEMVFSSMPNKNLVAWNSMIS-CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLV 555

Query: 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           A + +  L KGK + A  +++   S+  V +A ID++ KC  L+ +  +FE + R +   
Sbjct: 556 AVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVT 615

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMA 372
            N MI+ YG +G  E A+ LF+ M R +  P E T   +++S      VE G + F  M 
Sbjct: 616 WNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMR 675

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           I+ G +      +S++++  + G +D +
Sbjct: 676 IEYGVEPRMEHYASVVDLLGRAGRLDDA 703



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 36/293 (12%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           KA     + +I   L  ++ +    IHG   K G  +  ++    +D+YS+FG ++    
Sbjct: 443 KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 502

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
           +F  +P KN                               +V+WNSMIS Y+  G  + +
Sbjct: 503 VFSSMPNKN-------------------------------LVAWNSMISCYSWNGLPEMS 531

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           + +  ++   G      + + +L  VSS      GK +H   IR  +  S++ + N+LID
Sbjct: 532 INLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIP-SDLQVENALID 590

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G L YA  +F NM   ++++WNS+I+G  + G  E A+  F  M+ S  +PDE T
Sbjct: 591 MYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVT 650

Query: 249 ISIVINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              +I +C+    +++G  +F L  ++ G        ++ +DL  +  RL+D+
Sbjct: 651 FLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDA 703


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 280/521 (53%), Gaps = 12/521 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFS 151
           K + +  A  +FD +PE +VVSW+++++GY   G+S   + +   M  +G V P+ +  +
Sbjct: 78  KVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILA 137

Query: 152 ILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           I    +SS C       G+Q HG ++++G S  N V  N+L+ MY K  ++  A GV+  
Sbjct: 138 I---AISSCCDRGRVEEGRQCHGLLLKTGFSFHNYV-RNALVSMYSKCSIVQDAMGVWNE 193

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           +   DI+++NS++S    +GY    L+   SM       D+ T     + C  L++L  G
Sbjct: 194 VPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLG 253

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
             V    +      ++ V SA I+++ KC +   +  +F+ L   +  +   ++++  + 
Sbjct: 254 LHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQN 313

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
           G  E AL LF  M +E+++  EFT + +L++   +    +GS  H  + KSGF  + +V 
Sbjct: 314 GCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVG 373

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+ MYAK+G I+++ ++F  +  RD+++WN ++ G + +G   + L VF+++L     
Sbjct: 374 NALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEH 433

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           P+ +T   VL AC + G V +G      + +++GV PG EHY CI+ LL + GQL +A +
Sbjct: 434 PNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARN 493

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
              T P +     W ++L A  ++ +  L   VAE ++++       Y+LL+  YA   R
Sbjct: 494 FMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKR 553

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
           W+ +V+V+K+MR   I K  G SWI I N  + F + + +H
Sbjct: 554 WDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKH 594



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 185/404 (45%), Gaps = 38/404 (9%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C      +  +  HG L K GF+ H Y+ N  + +YS+     D + +++E+P  + 
Sbjct: 140 ISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVND- 198

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                         +V++NS++S     GY    LE+   M  +
Sbjct: 199 ------------------------------IVAYNSILSSLVENGYLREGLEVLRSMVSE 228

Query: 142 GVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            V+    TF    S  +S      G  +HG M+ S +   +  + +++I+MYGK G    
Sbjct: 229 SVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVE-CDAYVSSAIINMYGKCGKSLM 287

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A GVF  ++  +++ W ++++ CF +G  E AL+ F  M       +E+T ++++NAC  
Sbjct: 288 ARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAG 347

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L     G  +   S K GF  + +V +A I++++K   +E + ++F  +   D    N M
Sbjct: 348 LSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAM 407

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQF-HSMAIKSG 376
           I  +  +G G+ AL +FQ ML  +  P   T + VLS+   +  V+ G  + H +  + G
Sbjct: 408 ICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFG 467

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
                   + ++ + +KTG ++ +         K D+V+W T++
Sbjct: 468 VQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLL 511



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 10/353 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLG-NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           GK IH  +I +  +  N ++  NSLI+ Y K+  +  A  +F  M E +++SW++L++G 
Sbjct: 48  GKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGY 107

Query: 222 FNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             +G+    +     M   G  SP+EY ++I I++C     +++G+Q   L +K GF  +
Sbjct: 108 LLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFH 167

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
           + V +A + ++SKC+ ++D++ ++ ++   D    N ++S+    G+    LE+ + M+ 
Sbjct: 168 NYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVS 227

Query: 341 EDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E ++  + T     S    +  +  G   H   + S  + +A V+S+++ MY K G    
Sbjct: 228 ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLM 287

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           +  +F  L  R++V W  +M    QNG   E L++F ++ +E +  +  T A +L AC  
Sbjct: 288 ARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAG 347

Query: 460 GGFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
                 G L+    ++   ++ VM G      +I++  ++G +  A  + S M
Sbjct: 348 LSARRNGSLLHGHSEKSGFKHHVMVGN----ALINMYAKSGDIEAAKKVFSDM 396



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S +++ +V     +Y + L++ C    +      +HGH  K GF  H  +GN  +++Y++
Sbjct: 324 SKMEQENVKSNEFTY-AVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAK 382

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSM 118
            G  +   ++F ++  ++ I+WN  + G         AL VF ++      P+ V++  +
Sbjct: 383 SGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGV 442

Query: 119 ISGYASCGYSDYALEMF----SKMQLQGVRPSGFTFSILLSTVS 158
           +S   +CG+     E F      M+  GV+P    ++ ++S +S
Sbjct: 443 LS---ACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLS 483


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 185/699 (26%), Positives = 311/699 (44%), Gaps = 113/699 (16%)

Query: 8   AHVNKASLSYC-SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           +HV+   L Y       RC + +    A+ +H  L     +   +L  R + +Y+RF   
Sbjct: 23  SHVHNDELIYSFHAFFQRCFTLQQ---ARQLHSQLVLTTAHRLPFLAARLIAVYARFAFL 79

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
               ++FD IP ++                               ++ WNS+I    S G
Sbjct: 80  SHARKVFDAIPLESL----------------------------HHLLLWNSIIRANVSHG 111

Query: 127 YSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLG 183
           Y  +ALE++ +M+  G  P GFT  +++   S++ S+   + +H   ++ G   +++ + 
Sbjct: 112 YHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFR-NHLHVV 170

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG-CFNS------------------ 224
           N L+ MYGKLG +  A  +F  M    I+SWN+++SG   N                   
Sbjct: 171 NELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQ 230

Query: 225 ----------------GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
                           G  +  L+ F  MR  G       +++V++ C  +  +D GK++
Sbjct: 231 PNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEI 290

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF- 327
               VK G+     V +A I  + K   + D+ ++F ++   +    N +IS+Y   G  
Sbjct: 291 HGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLC 350

Query: 328 ----------------------------------------GEVALELFQLMLREDIRPTE 347
                                                   GE +LELF+ M    +    
Sbjct: 351 DEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANC 410

Query: 348 FTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            T+S VLS    +  +  G + H  AI++    N +V + L+ MY K G       +F  
Sbjct: 411 VTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDN 470

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           ++ RDL+SWN+++ G   +G     L  F E++   + PD IT  A+L AC++ G V  G
Sbjct: 471 IEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAG 530

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
             +F  M  E+ + P  EHYAC++DLL +AG L +A DI   MP +P   +W ++L +  
Sbjct: 531 RNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCR 590

Query: 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586
           +Y D+ + E  A +++ L+      + LL+  YA  GRW+   RV+   R  G+ K+ G 
Sbjct: 591 MYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQ 650

Query: 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           SWI ++ ++YTF+AG L H G + IY++L  L   M  E
Sbjct: 651 SWIEVRKKVYTFSAGNLVHFGLEDIYVILEELNLHMASE 689


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 174/610 (28%), Positives = 301/610 (49%), Gaps = 38/610 (6%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            C   +  DF + +H  + K+ F    Y+    L +Y++ G+ +D                
Sbjct: 659  CSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVED---------------- 702

Query: 85   NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                           A KVFD++ + +V   N+MIS +   G +  AL +++KM+     
Sbjct: 703  ---------------AKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETP 747

Query: 145  PSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
               FT S LLS    V S   G+ +H  +I+  +  SNV + ++L+ MY K G    A  
Sbjct: 748  VDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQ-SNVAIQSALLTMYYKCGSTEDADS 806

Query: 202  VFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            VF  M+E D+++W S+I+G C N  + + ALD F +M   G   D   ++ VI+A   L 
Sbjct: 807  VFYTMKERDVVAWGSMIAGFCQNRRFKD-ALDLFRAMEKEGVKADSDVMTSVISAGLGLE 865

Query: 261  NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
            N++ G  +   ++K G  S+  V  + +D++SK    E +  +F  +   +    N MIS
Sbjct: 866  NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMIS 925

Query: 321  TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDS 379
             Y   G  E+++ L   +L+        +++ VL ++  +  +  G   H+  I+    S
Sbjct: 926  CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPS 985

Query: 380  NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
            +  V ++L++MY K G +  +  IF  + +R+LV+WN+++ G   +G   E + +F+E+ 
Sbjct: 986  DLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMK 1045

Query: 440  EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
                 PD +T  A++ +C++ G V++G+ +F  M+ EYGV P  EHYA ++DLL +AG+L
Sbjct: 1046 RSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRL 1105

Query: 500  GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
              A      MP     S+W  +L A   + +++L E VA+ ++ ++      Y  L   Y
Sbjct: 1106 DDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLY 1165

Query: 560  AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
                 W+    ++  M+  G+ K  GCSWI +KNR+  F +G+       +IY  L  L 
Sbjct: 1166 GEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLK 1225

Query: 620  WEMEDEGCVY 629
              ME +GC Y
Sbjct: 1226 SNMEGKGCSY 1235



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 214/441 (48%), Gaps = 32/441 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C S  +    +TIH  +  +G  +  Y+    +++Y + G     LQ+FD++    
Sbjct: 447 LLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM---- 502

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                        S++ D+A         PD+  WN +I GY   G+ +  L  F +MQ 
Sbjct: 503 -------------SESRDSA---------PDITVWNPVIDGYFKYGHFEEGLAQFCRMQE 540

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+RP G++ SI+L   + +S    G+QIHG +IR+     +  L  +LI MY       
Sbjct: 541 LGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFE-GDPYLETALIGMYSSCSRPM 599

Query: 198 YAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            A+ +F  +E   +I++WN +I G   +G  E +L+ +   +         + +    AC
Sbjct: 600 EAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTAC 659

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
           +    LD G+QV    +K+ F  +  V ++ + +++K   +ED+ ++F+Q+   +  + N
Sbjct: 660 SHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRN 719

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            MIS +   G    AL L+  M   +     FT+S +LS    +   + G   H+  IK 
Sbjct: 720 AMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKR 779

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
              SN  + S+L+ MY K GS + +  +F  + +RD+V+W +++ G  QN R  + LD+F
Sbjct: 780 SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLF 839

Query: 436 EELLEEGLPPDRITLAAVLLA 456
             + +EG+  D   + +V+ A
Sbjct: 840 RAMEKEGVKADSDVMTSVISA 860



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 181/356 (50%), Gaps = 11/356 (3%)

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVL 182
           G    ALE+ SK     +  + FTF  LL T +S     HG+ IH S++  GL  S+  +
Sbjct: 420 GKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQ-SDPYI 478

Query: 183 GNSLIDMYGKLGVLYYAFGVFLNMEE-----LDIISWNSLISGCFNSGYGELALDQFYSM 237
             SLI+MY K G+L  A  VF  M E      DI  WN +I G F  G+ E  L QF  M
Sbjct: 479 ATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRM 538

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           +  G  PD Y++SIV+  C +L     G+Q+    ++  F  +  + +A I ++S C+R 
Sbjct: 539 QELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRP 598

Query: 298 EDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            ++  LF +L+ R +    NVMI  +   G  E +LEL+ L   E+ +    + +   ++
Sbjct: 599 MEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTA 658

Query: 357 IPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
                V + G Q H   IK  F  +  V +SL+ MYAK+GS++ + ++F ++  +++   
Sbjct: 659 CSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELR 718

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           N ++     NGRA + L ++ ++     P D  T++++L  C+  G  D G  V +
Sbjct: 719 NAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHA 774



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/500 (23%), Positives = 230/500 (46%), Gaps = 37/500 (7%)

Query: 35   KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
            + IHG++ +  F    YL    + +YS      +   LF ++  ++              
Sbjct: 567  RQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRS-------------- 612

Query: 95   DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                            ++V+WN MI G+   G  + +LE++S  + +  +    +F+   
Sbjct: 613  ----------------NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAF 656

Query: 155  STVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
            +  S       G+Q+H  +I+      +  +  SL+ MY K G +  A  VF  + + ++
Sbjct: 657  TACSHGEVLDFGRQVHCDVIKMNFQ-DDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEV 715

Query: 212  ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
               N++IS    +G    AL  +  M+      D +TIS +++ C+ + + D G+ V A 
Sbjct: 716  ELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAE 775

Query: 272  SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
             +K    SN  + SA + ++ KC   ED+  +F  +   D      MI+ + +    + A
Sbjct: 776  VIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDA 835

Query: 332  LELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            L+LF+ M +E ++     ++ V+S+ + +  VE G   H  AIK G +S+  VA SL++M
Sbjct: 836  LDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDM 895

Query: 391  YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
            Y+K G  +S+  +F  +  ++LV+WN+++   + NG    ++++  ++L+ G   D +++
Sbjct: 896  YSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSI 955

Query: 451  AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
              VL+A +    + KG     A +    +    +    +ID+  + G L  A  I   MP
Sbjct: 956  TTVLVAVSSVAALLKGK-TLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMP 1014

Query: 511  FQPGCSIWESILRASAIYGD 530
             +     W S++     +G+
Sbjct: 1015 -RRNLVTWNSMIAGYGSHGN 1033



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 190/388 (48%), Gaps = 39/388 (10%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            S L+  C    S+DF +T+H  + K    ++  + +  L +Y + G+++D   +F  + +
Sbjct: 754  SSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKE 813

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            ++ ++W                                SMI+G+        AL++F  M
Sbjct: 814  RDVVAW-------------------------------GSMIAGFCQNRRFKDALDLFRAM 842

Query: 139  QLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            + +GV+      + ++S    + +   G  IHG  I+ GL  S+V +  SL+DMY K G 
Sbjct: 843  EKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLE-SDVFVACSLVDMYSKFGF 901

Query: 196  LYYAFGVFLNMEELDIISWNSLISGCFN-SGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               A  VF +M   ++++WNS+IS C++ +G  E++++    +   G+  D  +I+ V+ 
Sbjct: 902  AESAEMVFSSMPNKNLVAWNSMIS-CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLV 960

Query: 255  ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            A + +  L KGK + A  +++   S+  V +A ID++ KC  L+ +  +FE + R +   
Sbjct: 961  AVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVT 1020

Query: 315  INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMA 372
             N MI+ YG +G  E A+ LF+ M R +  P E T   +++S      VE G + F  M 
Sbjct: 1021 WNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMR 1080

Query: 373  IKSGFDSNAVVASSLMEMYAKTGSIDSS 400
            I+ G +      +S++++  + G +D +
Sbjct: 1081 IEYGVEPRMEHYASVVDLLGRAGRLDDA 1108



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 36/293 (12%)

Query: 12   KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
            KA     + +I   L  ++ +    IHG   K G  +  ++    +D+YS+FG ++    
Sbjct: 848  KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 907

Query: 72   LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
            +F  +P KN                               +V+WNSMIS Y+  G  + +
Sbjct: 908  VFSSMPNKN-------------------------------LVAWNSMISCYSWNGLPEMS 936

Query: 132  LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
            + +  ++   G      + + +L  VSS      GK +H   IR  +  S++ + N+LID
Sbjct: 937  INLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIP-SDLQVENALID 995

Query: 189  MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
            MY K G L YA  +F NM   ++++WNS+I+G  + G  E A+  F  M+ S  +PDE T
Sbjct: 996  MYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVT 1055

Query: 249  ISIVINACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
               +I +C+    +++G  +F L  ++ G        ++ +DL  +  RL+D+
Sbjct: 1056 FLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDA 1108


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 156/509 (30%), Positives = 277/509 (54%), Gaps = 9/509 (1%)

Query: 115 WNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMI 171
           +NS+I+GY    +   A+ ++ +M   G  P  FTF +LL   S  S +  G+Q+HG ++
Sbjct: 73  FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132

Query: 172 RSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELAL 231
           + GL L++  + NSLI  YG  G    A  VF  M   D++SWNSLISG   +G+ + A+
Sbjct: 133 KLGL-LADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAI 191

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
             F+ M      P   T+  V+ AC +  +L  GK +  + ++  F  N ++ +A +D++
Sbjct: 192 SVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHGV-IERRFKVNLVLGNAMLDMY 247

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
            K     ++  +F++L   D     +MI+   +    + +LELF +M    I P    L+
Sbjct: 248 VKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILT 307

Query: 352 CVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            VLS+   +  ++ G+  H    + G   +  + +++++MYAK G I+ + +IF  + +R
Sbjct: 308 SVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQR 367

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           +  +WN ++ GL  +G   E L++FE ++  G+ P+ IT  A+L AC + G VD+G   F
Sbjct: 368 NTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYF 427

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
             M + Y ++P  EHY C+IDL C+AG L +A+++  TMP +P   IW  +L A    G+
Sbjct: 428 DNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGN 487

Query: 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIG 590
           ++L+  + + +++L       + LL+   A+  RW  + R++++M+  G+ K  G S I 
Sbjct: 488 IELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIE 547

Query: 591 IKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           +  + + F  G++ H   ++IY VL L+ 
Sbjct: 548 VDGKAHEFVVGDISHLQTEEIYKVLNLIN 576



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 199/426 (46%), Gaps = 42/426 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C +F      + +HG + KLG  A  Y+ N  +  Y   G                
Sbjct: 111 LLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACG---------------- 154

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +   A KVFDE+   DVVSWNS+ISG+   G+ D A+ +F +M  
Sbjct: 155 ---------------DFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD- 198

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
             V PS  T   +L+  +     C GK IHG + R      N+VLGN+++DMY K G  Y
Sbjct: 199 --VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR--FKVNLVLGNAMLDMYVKNGCFY 254

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  +   DI+SW  +I+G   S + + +L+ F  MR  G SPD   ++ V++AC 
Sbjct: 255 EAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACA 314

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L  LD G  V     + G   +  + +A +D+++KC  +E ++++F  + + +    N 
Sbjct: 315 SLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNA 374

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQ-FHSMAIKS 375
           ++     +G    AL LF++M+   ++P E T   +L++      V+ G + F +M+   
Sbjct: 375 LLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLY 434

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDV 434
                      +++++ + G ++ + E+   +  K D++ W  ++   T  G    +  +
Sbjct: 435 NLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRI 494

Query: 435 FEELLE 440
            + +LE
Sbjct: 495 QDYILE 500



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 145/322 (45%), Gaps = 56/322 (17%)

Query: 1   MSSYLKKAHVNKA-----------SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAH 49
           +S ++K  H ++A           S++    ++  C         K IHG + +  F  +
Sbjct: 178 ISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHG-VIERRFKVN 236

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
             LGN  LD+Y + G   +   +FDE+P ++ +SW I + GL++SD+   +L++F     
Sbjct: 237 LVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELF----- 291

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------H 162
                                     S M+  G+ P     +I+L++V SAC        
Sbjct: 292 --------------------------SMMRTLGISPD----AIILTSVLSACASLGTLDF 321

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G  +H  + + G+   ++ +G +++DMY K G +  A  +F +M + +  +WN+L+ G  
Sbjct: 322 GTWVHEYINQRGIKW-DIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLA 380

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNS 281
             G    AL+ F  M  SG  P+E T   ++ AC     +D+G++ F  +S     L   
Sbjct: 381 MHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKL 440

Query: 282 IVLSATIDLFSKCNRLEDSVRL 303
                 IDLF +   LE++V L
Sbjct: 441 EHYGCMIDLFCRAGLLEEAVEL 462


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 165/605 (27%), Positives = 303/605 (50%), Gaps = 28/605 (4%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H HLF  G + H     + ++ Y++ G  +   ++FD  P+ +   W + ++  +    
Sbjct: 367 LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGF 426

Query: 97  LDTALKVFDEIPEPDVVSWNSMI--------SGYASC------GYSDYALEMFSKMQLQG 142
            + A+ ++ E+   D    ++ +        SG+         G +   L+MFS+M  + 
Sbjct: 427 FEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEA 486

Query: 143 VRPSGFTF-----------SILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           V P   T            S+ L  +     G+ +HG +IR  +      LG +L+++Y 
Sbjct: 487 VEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYA 546

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
             G L     VF  ++E  I+SWN+LIS    +G  E AL  F  M+  G  PD Y+++ 
Sbjct: 547 DTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLAS 606

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            ++AC  +     G Q+    +K G   N  V +A ID+++KC  +  + ++FE++    
Sbjct: 607 SLSACGTISFSQLGAQIHGYIIKTGNF-NDFVQNALIDMYAKCGFVHSANKMFEKIKEKS 665

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHS 370
               N MI  + + G+   A+ LF  M    ++  + T LS + +   +  +E G   H 
Sbjct: 666 LVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHH 725

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             I  G   ++ + ++L +MY+K G +  +  +F ++ +R +VSW+ ++ G   +G+   
Sbjct: 726 KLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINA 785

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
           T+ +F ++L  G+ P+ IT   +L AC++ G V++G L F++M E +GV P  +H+AC++
Sbjct: 786 TISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMV 844

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
           DLL +AG L  A  I +++PF    SIW ++L    I+  + + +++ + ++D+      
Sbjct: 845 DLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTG 904

Query: 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQK 610
            Y+LL+  YA  G W+   +V+ +M+  G+ KV G S I I  +IY F  G+  H   + 
Sbjct: 905 YYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKD 964

Query: 611 IYLVL 615
           IY  L
Sbjct: 965 IYRFL 969



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 36/205 (17%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C      +  K +H  L   G    +YL     D+YS+ G       +FD + +++
Sbjct: 707 VIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERS 766

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW++                               MI+GY   G  +  + +F++M  
Sbjct: 767 IVSWSV-------------------------------MIAGYGMHGQINATISLFNQMLG 795

Query: 141 QGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G++P+  TF  +LS  S A     GK    SM   G+   +      ++D+  + G L 
Sbjct: 796 SGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFA-CMVDLLSRAGDLN 854

Query: 198 YAFGVFLNME-ELDIISWNSLISGC 221
            A+ +  ++    +   W +L++GC
Sbjct: 855 GAYQIITSLPFPANSSIWGALLNGC 879



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 45/148 (30%)

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM------ 419
           +Q H+    +G   +   ++ L+E YA+ G  +SS  +F    K D   W  ++      
Sbjct: 365 TQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWG 424

Query: 420 ---------------MGLTQ------------------------NGRAAETLDVFEELLE 440
                             TQ                        NG+A+E LD+F +++ 
Sbjct: 425 GFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMIS 484

Query: 441 EGLPPDRITLAAVLLACNYGGFVDKGML 468
           E + PD +T+ +V  AC+  G +  G L
Sbjct: 485 EAVEPDSVTMLSVTEACSELGSLRLGRL 512


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 289/534 (54%), Gaps = 7/534 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSS 159
           A  VF+ + E D++SWNS+I+G A       A+ +F ++   G++P  +T + +L   SS
Sbjct: 376 ARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASS 435

Query: 160 ACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
              G    KQIH   I++  ++++  +  +LID Y +   +  A  V       D+++WN
Sbjct: 436 LPEGLSLSKQIHVHAIKTN-NVADSFVSTALIDAYSRNRCMKEA-EVLFGRNNFDLVAWN 493

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +++SG   S  G   L+ F  M   G   D++T++ V+  C  L  +++GKQV A ++K 
Sbjct: 494 AMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS 553

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G+  +  V S  +D++ KC  +  +   F+ +   D      +IS     G  E AL +F
Sbjct: 554 GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVF 613

Query: 336 QLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M    + P EFT++ +  +S  +  +E G Q H+ A+K    S+  V +SL++MYAK 
Sbjct: 614 SQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKC 673

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           GSID +  +F +++  ++ +WN +++GL Q+G   E L +F+++   G+ PD++T   VL
Sbjct: 674 GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVL 733

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G V +      +M  +YG+ P  EHY+C+ D L +AG + +A ++  +M  +  
Sbjct: 734 SACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEAS 793

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
            S++ ++L A  + GD +  + VA ++++L+      Y LL+  YA   +W+ +   + +
Sbjct: 794 ASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTM 853

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           M+ + + K  G SWI +KN+I+ F   +  +   + IY  ++ +  +++ EG V
Sbjct: 854 MKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYV 907



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/481 (28%), Positives = 237/481 (49%), Gaps = 45/481 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  CL       +++ HG+  K+G +   ++    +++Y +FG   +   LF+E+P 
Sbjct: 156 SPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPY 215

Query: 79  KNCISWNICLRGLL----KSDNLDTA--------------LKVFDEIPEPD--------- 111
           ++ + WN+ L+  L    K + +D +              L++   I   D         
Sbjct: 216 RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSF 275

Query: 112 -----------VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---V 157
                      ++S N ++SGY   G     L+ F  M    +     TF ++L+T   +
Sbjct: 276 ENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRL 335

Query: 158 SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
            S   G+Q+H   ++ GL L  + + NSLI+MY KL  +  A  VF NM E D+ISWNS+
Sbjct: 336 DSLALGQQVHCMALKLGLDLM-LTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSV 394

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL-RNLDKGKQVFALSVKVG 276
           I+G   S     A+  F  +   G  PD YT++ V+ A + L   L   KQ+   ++K  
Sbjct: 395 IAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTN 454

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
            +++S V +A ID +S+   ++++  LF + + +D    N M+S Y +   G   LELF 
Sbjct: 455 NVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFA 513

Query: 337 LMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           LM ++  R  +FTL+ VL +   +  +  G Q H+ AIKSG+D +  V+S +++MY K G
Sbjct: 514 LMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCG 573

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
            + ++   F  +   D V+W T++ G  +NG     L VF ++   G+ PD  T+A +  
Sbjct: 574 DMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAK 633

Query: 456 A 456
           A
Sbjct: 634 A 634



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 188/450 (41%), Gaps = 73/450 (16%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C   +   +S       K  H  +  L  N   +L N  + +YS+ G+            
Sbjct: 49  CFGFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGS------------ 96

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS-----DYAL 132
                              L  A +VFD++PE D+VSWNS+++ YA            A 
Sbjct: 97  -------------------LTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAF 137

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F  ++   V  S  T S +L     +   C  +  HG   + GL   + V G +L+++
Sbjct: 138 LLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAG-ALVNI 196

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +     +F  M   D++ WN ++      G+ E A+D   +   SG  P+E T 
Sbjct: 197 YLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT- 255

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
                    LR L +     + + +V    N    SA  ++ S+                
Sbjct: 256 ---------LRLLSRISGDDSEAGQVKSFENGNDASAVSEIISR---------------- 290

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQF 368
                 N ++S Y   G     L+ F  M+  D+   + T   VL++ + +  +  G Q 
Sbjct: 291 ------NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQV 344

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H MA+K G D    V++SL+ MY K   I  +  +F  + +RDL+SWN+++ G+ Q+   
Sbjct: 345 HCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLE 404

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACN 458
            E + +F +LL  GL PD  T+ +VL A +
Sbjct: 405 VEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 35/226 (15%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H +  K G++   ++ +  LD+Y + G        FD IP  + ++W          
Sbjct: 544 KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAW---------- 593

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
                                 ++ISG    G  + AL +FS+M+L GV P  FT + L 
Sbjct: 594 ---------------------TTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLA 632

Query: 155 ---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
              S +++   G+QIH + ++   + S+  +G SL+DMY K G +  A+ +F  +E ++I
Sbjct: 633 KASSCLTALEQGRQIHANALKLNCT-SDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI 691

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            +WN+++ G    G G+ AL  F  M   G  PD+ T   V++AC+
Sbjct: 692 TAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACS 737



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           CL+  + +  + IH +  KL   +  ++G   +D+Y++ G+ DD   LF  I   N  +W
Sbjct: 637 CLT--ALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 694

Query: 85  NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  L GL +      AL++F ++     +PD V++  ++S  +  G    A +    M  
Sbjct: 695 NAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHR 754

Query: 141 Q-GVRPSGFTFSILLSTVSSA 160
             G++P    +S L   +  A
Sbjct: 755 DYGIKPEIEHYSCLADALGRA 775



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA-----ETLDVFEE 437
           + ++L+ MY+K GS+  +  +F K+ +RDLVSWN+I+    Q+         E   +F  
Sbjct: 83  LVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRI 142

Query: 438 LLEEGLPPDRITLAAVLLACNYGGFV 463
           L ++ +   R+TL+ +L  C + G+V
Sbjct: 143 LRQDVVYTSRMTLSPMLKLCLHSGYV 168


>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 520

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 269/497 (54%), Gaps = 45/497 (9%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           L+  ++   S +Y S ++  C     +D+ + IH HL K GF                  
Sbjct: 21  LQYPYLQPDSFTYPS-VLKACGGLGRYDYGRMIHTHLIKSGF------------------ 61

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                  +FD +   + +S +       K +    A+++FDE+PE DV  WN++IS Y  
Sbjct: 62  -------VFDIVVASSLVSLHA------KCNLFGYAIQLFDEMPERDVACWNTVISCYYQ 108

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSL 177
            G ++ ALEMF KM+  G  P+    S+ L+TV S+C        GK+IH  ++++G+ L
Sbjct: 109 DGKAEKALEMFGKMRDSGFEPN----SVTLTTVISSCARLLDLERGKEIHREVMQNGMVL 164

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
              V G++L+DMYGK G L  A  +F  M +  +++WNSLI+G  ++   +  ++ F+ M
Sbjct: 165 DGFV-GSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRM 223

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
              G  P   T+S ++ AC++  +L  G+ +   +V+     +  V S  I+L+ KC ++
Sbjct: 224 NMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKV 283

Query: 298 EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
           + +  +F  L + +  + NVMIS Y   G    AL+++  M    ++P   T S +LS+ 
Sbjct: 284 QSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSAC 343

Query: 358 P-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWN 416
             +  +E G + H+   K+  ++N +V  +L++MYAK G++D +  +F KL +RDL+SW 
Sbjct: 344 SQLAALEKGKEIHNCITKNDLETNEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWT 403

Query: 417 TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476
           +I+     +G+A E L +FEEL +    PD +T  AVL AC++ G VDKG   F+ M   
Sbjct: 404 SIISAYGSHGQALEALRLFEELQQSKASPDAVTFLAVLSACSHAGLVDKGYYYFNQMITN 463

Query: 477 YGVMPGEEHYACIIDLL 493
           YG+ PG EHY+C+IDLL
Sbjct: 464 YGIKPGLEHYSCLIDLL 480



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 223/415 (53%), Gaps = 17/415 (4%)

Query: 124 SCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGL 175
           +C Y++ ALE+F ++ Q   ++P  FT+     +V  AC       +G+ IH  +I+SG 
Sbjct: 7   NCMYTE-ALELFDRLLQYPYLQPDSFTYP----SVLKACGGLGRYDYGRMIHTHLIKSGF 61

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
              ++V+ +SL+ ++ K  +  YA  +F  M E D+  WN++IS  +  G  E AL+ F 
Sbjct: 62  VF-DIVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFG 120

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            MR SG+ P+  T++ VI++C +L +L++GK++    ++ G + +  V SA +D++ K  
Sbjct: 121 KMRDSGFEPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFG 180

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            L+ +  +FEQ+ +      N +I+ Y      +  +ELF  M  E  +PT  TLS +L 
Sbjct: 181 CLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILL 240

Query: 356 SIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +      ++HG   H  A+++    +  V+S L+E+Y K G + S+  IF  L K ++V 
Sbjct: 241 ACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVL 300

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           WN ++ G    G   + LD+++E+    + PD +T +++L AC+    ++KG  + + + 
Sbjct: 301 WNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCIT 360

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           +   +   E     ++D+  + G + +A+ + + +P +   S W SI+ A   +G
Sbjct: 361 KN-DLETNEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLS-WTSIISAYGSHG 413



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 29/135 (21%)

Query: 80  NCISWN------ICLRGLL----KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
           NCI+ N      I +  LL    K   +D AL VF+++PE D++SW S+IS Y S G + 
Sbjct: 357 NCITKNDLETNEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQAL 416

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN----- 184
            AL +F ++Q     P   TF  +LS  S        H  ++  G    N ++ N     
Sbjct: 417 EALRLFEELQQSKASPDAVTFLAVLSACS--------HAGLVDKGYYYFNQMITNYGIKP 468

Query: 185 ------SLIDMYGKL 193
                  LID+ G++
Sbjct: 469 GLEHYSCLIDLLGRI 483


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 155/519 (29%), Positives = 268/519 (51%), Gaps = 35/519 (6%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   +D A+KVF+ +P   +VSWN +I+G+   G    A+E+ S MQ  G  P+  T+S 
Sbjct: 4   KCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSN 63

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
           LL++   A   + +H                               A  +F  +    + 
Sbjct: 64  LLASCIKA---RDVHS------------------------------ARAMFDKISRPSVT 90

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           +WN+L+SG       +  ++ F  M++    PD  T+++++++C+KL  LD G+QV + S
Sbjct: 91  TWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSAS 150

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           V+    ++  V S  +D++SKC ++  +  +F ++   D    N +IS    +   + A 
Sbjct: 151 VRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAF 210

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           + F+ M    I PTE + + +++S   +  + HG Q H+  +K G+D N  V S+L++MY
Sbjct: 211 DFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMY 270

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G++D +   F  +  +++V+WN ++ G  QNG   + +++FE +L     PD +T  
Sbjct: 271 AKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFI 330

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           AVL  C++ G VDK M  F++M+  YG++P  EHY C+ID L +AG+  +   +   MP 
Sbjct: 331 AVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPC 390

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +    IWE +L A  ++ + +L +  AE +  +   +P PY LL+  YA  GR      V
Sbjct: 391 KDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAV 450

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFN-AGELQHHGGQ 609
           + +M   G+ K  G SWI  K+ +  F  A +L   GG+
Sbjct: 451 RALMSNRGVVKGRGYSWIDQKDGVRAFMVADDLGADGGE 489



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 172/335 (51%), Gaps = 39/335 (11%)

Query: 59  LYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL--------------------------- 91
           +Y++    D+ +++F+ +P    +SWNI + G                            
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 92  --------LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
                   +K+ ++ +A  +FD+I  P V +WN+++SGY         +E+F +MQ Q V
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNV 120

Query: 144 RPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           +P   T +++LS+ S       G+Q+H + +R  L  +++ + + L+DMY K G +  A 
Sbjct: 121 QPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLH-NDMFVASGLVDMYSKCGQIGIAR 179

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F  M E D++ WNS+ISG       + A D F  MR +G  P E + + +IN+C++L 
Sbjct: 180 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLS 239

Query: 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           ++  G+Q+ A  +K G+  N  V SA ID+++KC  ++D+   F+ +   +    N MI 
Sbjct: 240 SIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIH 299

Query: 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            Y + G G+ A+ELF+ ML  + +P   T   VL+
Sbjct: 300 GYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLT 334



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C      DF + +H    +   +   ++ +  +D+YS+ G       +F+++ +++
Sbjct: 130 ILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 189

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            + WN                                +ISG      +  A + F +M+ 
Sbjct: 190 VVCWNS-------------------------------IISGLTIHSLNKEAFDFFKQMRE 218

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P+  +++ ++   S +SS  HG+QIH  +++ G    NV +G++LIDMY K G + 
Sbjct: 219 NGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYD-QNVYVGSALIDMYAKCGNMD 277

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A   F  M   +I++WN +I G   +G G+ A++ F  M  +   PD  T   V+  C+
Sbjct: 278 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 337

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
               +DK    F ++    G +  +   +  ID   +  R  +   L  ++   D  +I
Sbjct: 338 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPII 396



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 46/244 (18%)

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           +++KC  ++++V++FE L        N++I+ +G+ G    A+E+  LM      P E T
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
            S +L+S                                    K   + S+  +F K+ +
Sbjct: 61  YSNLLASC----------------------------------IKARDVHSARAMFDKISR 86

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
             + +WNT++ G  Q  +  +T+++F  +  + + PDR TLA +L +C+  G +D G  V
Sbjct: 87  PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQV 146

Query: 470 FSA-----MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
            SA     +  +  V  G      ++D+  + GQ+G A  I + M  +     W SI+  
Sbjct: 147 HSASVRFLLHNDMFVASG------LVDMYSKCGQIGIARSIFNKMT-ERDVVCWNSIISG 199

Query: 525 SAIY 528
             I+
Sbjct: 200 LTIH 203



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 16  SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE 75
           SY S +I+ C    S    + IH  + K G++ + Y+G+  +D+Y++ G  DD    FD 
Sbjct: 227 SYAS-MINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 285

Query: 76  IPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGYSDYA 131
           +  KN ++WN  + G  ++   D A+++F+ +     +PD V++ ++++G +  G  D A
Sbjct: 286 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 345

Query: 132 LEMFSKMQLQ-GVRPSGFTFSILLSTVSSA 160
           +  F+ M+   G+ P    ++ L+  +  A
Sbjct: 346 MAFFNSMENSYGIIPLAEHYTCLIDALGRA 375


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 175/600 (29%), Positives = 305/600 (50%), Gaps = 44/600 (7%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+T+HG     G+ A T++ +    LY +    DD                         
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDD------------------------- 167

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSI 152
                 A KVFD +P PD + WN++++G         ALE F +M   G VRP   T + 
Sbjct: 168 ------ARKVFDTVPSPDTILWNTLLAGLPG----SEALEAFVRMVDAGRVRPDSTTLAS 217

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLS-LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
            L   + A H   G+ +HG  ++ GL+   +VV G  L+ +Y K G +  A  +F  M+ 
Sbjct: 218 SLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTG--LMSLYSKCGDMDSAQFLFDRMDN 275

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D++++N+LISG   +G  E +++ F  +  SG+ P+  T+  VI   +   +    + +
Sbjct: 276 PDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCL 335

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            A  VK    ++++V +A   L+ + N +E +  +F+ +        N MIS Y + G  
Sbjct: 336 HAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLT 395

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E+A+ LFQLM   +++P   T+S  LS+   +  +  G   H +  K   + N  V ++L
Sbjct: 396 EMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTAL 455

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK GSI  +  IF ++D +++VSWN ++ G   +G+ AE L +++++L+  + P  
Sbjct: 456 IDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTS 515

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
            T  +V+ AC++GG VD+G  VF  M  EY + PG EH  C++DLL +AG+L +A+++ S
Sbjct: 516 STFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELIS 575

Query: 508 TMPFQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             P    G  +W ++L A  ++ +  L +  ++++ +L   +   Y LL+  Y  +  + 
Sbjct: 576 EFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYS 635

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
               V++  +   + K  GC+ I I +R + F AG+  H   + IY  L  LT +M + G
Sbjct: 636 EAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAG 695



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 220/478 (46%), Gaps = 45/478 (9%)

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV--- 157
           L++F   P PD    N+++    S            +  L    P  F+F+   +++   
Sbjct: 74  LRLFRAFPCPDRFLRNALLRSLPSL-----------RPHLLFPSPDSFSFAFAATSLSSS 122

Query: 158 -----SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
                + A   + +HG  + +G + ++  + ++L  +Y KL     A  VF  +   D I
Sbjct: 123 CSSRGNDAAAARTLHGLSVAAGYA-ADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTI 181

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            WN+L++G      G  AL+ F  M  +G   PD  T++  + A  +  ++  G+ V   
Sbjct: 182 LWNTLLAGL----PGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGY 237

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            VK G   +  V++  + L+SKC  ++ +  LF+++D  D    N +IS Y   G  E +
Sbjct: 238 GVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESS 297

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEH---GSQFHSMAIKSGFDSNAVVASSL 387
           +ELF+ +     RP   TL  V   IP+  P  H       H+  +K+  D++A+V+++L
Sbjct: 298 VELFKELTASGWRPNSSTLVAV---IPVYSPFGHELLARCLHAFVVKARLDADALVSTAL 354

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
             +Y +   ++S+  IF  + ++ + SWN ++ G  QNG     + +F+ + E  + P+ 
Sbjct: 355 TTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNP 414

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEE-----YGVMPGEEHYACIIDLLCQAGQLGKA 502
           IT+++ L AC + G +  G  V   + +E       VM        +ID+  + G + +A
Sbjct: 415 ITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVM------TALIDMYAKCGSIAEA 468

Query: 503 IDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
             I   M  +   S W +++    ++G       + + M+D ++  P   + L+  YA
Sbjct: 469 RSIFDRMDNKNVVS-WNAMISGYGLHGQGAEALKLYKDMLDARI-LPTSSTFLSVIYA 524



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 56/268 (20%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S  +  C    +    K +H  + K     + Y+    +D+Y++ G+  +   +FD +  
Sbjct: 418 SSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDN 477

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN +SW                               N+MISGY   G    AL+++  M
Sbjct: 478 KNVVSW-------------------------------NAMISGYGLHGQGAEALKLYKDM 506

Query: 139 QLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
               + P+  TF   LS + +  H      G+++   M         +     ++D+ G+
Sbjct: 507 LDARILPTSSTF---LSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGR 563

Query: 193 LGVLYYAFGVFLNMEELDIIS--WNSLISGCF---NSGYGELALDQFYSM--RYSGY--- 242
            G L  A  +     +  I    W +L+  C    NS   +LA  + + +    +GY   
Sbjct: 564 AGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVL 623

Query: 243 ------SPDEYTISIVINACTKLRNLDK 264
                 S   Y+ + V+    K R L K
Sbjct: 624 LSNLYTSKKHYSEAAVVRQEAKTRKLVK 651


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 192/656 (29%), Positives = 328/656 (50%), Gaps = 71/656 (10%)

Query: 36  TIHGHLFKLGFNAHTYLG-----NRCLDLYSRFGTSDDVLQLFDEIPQKN-----CISWN 85
           T+ G LF LGF+  +Y         C   +S        L     +  KN       S N
Sbjct: 270 TVGGLLF-LGFSVSSYFYPPLWLQSCSLFHSTISNGPPPLGTLHALSVKNGSLQTLNSAN 328

Query: 86  ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145
             L   +KS N+D A K+FDEIP+ +  +W  +ISG++  G S+   ++F +M+ +G  P
Sbjct: 329 YLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACP 388

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202
           + +T S L    S   +   GK +H  M+R+G+  ++VVLGNS++D+Y K  V  YA  V
Sbjct: 389 NQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGID-ADVVLGNSILDLYLKCKVFEYAERV 447

Query: 203 FLNMEELDIISWNSLIS-------------------------------GCFNSGYGELAL 231
           F  M E D++SWN +IS                               G    GY   AL
Sbjct: 448 FELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQAL 507

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           +Q Y M   G      T SI +   + L  ++ G+Q+  + +K GF  +  + S+ ++++
Sbjct: 508 EQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMY 567

Query: 292 SKCNRLEDSVRLFEQ-----LDRWDYAVI-----------NVMISTYGRYGFGEVALELF 335
            KC R++++  + +      L   +  V             +M+S Y   G  E  L+ F
Sbjct: 568 CKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTF 627

Query: 336 QLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
           +LM+RE +     T++ ++S+     + E G   H+   K G   +A V SSL++MY+K+
Sbjct: 628 RLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKS 687

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           GS+D +  IF + ++ ++V W +++ G   +G+  + + +FEE+L +G+ P+ +T   VL
Sbjct: 688 GSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVL 747

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC + G +++G   F  MK+ Y + PG EH   ++DL  +AG L +    T    F+ G
Sbjct: 748 NACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTE----TKNFIFENG 803

Query: 515 ----CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
                S+W+S L +  ++ +V++ + V+E ++ +    P  Y LL+   A   RW+   R
Sbjct: 804 ISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAAR 863

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           V+ +M + GI K  G SWI +K++I+TF  G+  H   ++IY  L +L   +++ G
Sbjct: 864 VRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIG 919



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 198/405 (48%), Gaps = 26/405 (6%)

Query: 24  RCLSFK-SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCI 82
           +C S   +    K +H  + + G +A   LGN  LDLY +    +   ++F+ + + + +
Sbjct: 398 KCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVV 457

Query: 83  SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
           SWNI +   L++ +++ +L +F  +P  DVVSWN+++ G    GY   ALE    M   G
Sbjct: 458 SWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECG 517

Query: 143 VRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
              S  TFSI L   SS      G+Q+HG +++ G      +  +SL++MY K G +  A
Sbjct: 518 TEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIR-SSLVEMYCKCGRMDNA 576

Query: 200 ----------------FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
                            GV     +  I+SW  ++SG   +G  E  L  F  M      
Sbjct: 577 SIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVV 636

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
            D  T++ +I+AC     L+ G+ V A + K+G   ++ V S+ ID++SK   L+D+  +
Sbjct: 637 VDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTI 696

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPV 362
           F Q +  +      MIS    +G G+ A+ LF+ ML + I P E T   VL++      +
Sbjct: 697 FRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLL 756

Query: 363 EHGSQFHSMAIKSGFDSNAVV--ASSLMEMYAKTGSIDSSTEIFV 405
           E G ++  M +K  +  N  V   +S++++Y + G + + T+ F+
Sbjct: 757 EEGCRYFRM-MKDAYCINPGVEHCTSMVDLYGRAGHL-TETKNFI 799


>gi|242051244|ref|XP_002463366.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
 gi|241926743|gb|EER99887.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
          Length = 745

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 169/544 (31%), Positives = 291/544 (53%), Gaps = 28/544 (5%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGY-SDYALEMFSKMQLQG-VRPSGFTFSILL 154
           +D A KVF+E+P  D+VSWN+++ G A  G  S   + +F +M  QG VRP      I +
Sbjct: 199 MDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGDVRPD----RISV 254

Query: 155 STVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +V  AC        G+QIHG  ++ G+   +V + N L+ MY K G    A  +F  M 
Sbjct: 255 CSVIPACGAEGKLELGRQIHGFAVKLGVE-GHVSIANVLVAMYYKCGTPGCARRLFEFMG 313

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           E D+ISW +++S       GE A+  F  MR  G +P+E T   ++++        +G+ 
Sbjct: 314 ERDVISWTTVMSM-----DGEDAVSLFNGMRRDGVAPNEVTFVAMLSSMPGDCPAREGQM 368

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           + A+ +K      +   ++ I +++K  R++D+  +F  +   +    N +IS Y +   
Sbjct: 369 IHAVCLKTSLSDKAAAANSLITMYAKLRRMDDARMIFSLMPHSEIIAWNALISGYAQNEM 428

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP---IPPVEHGSQFHSMAIKSGFDSNAVVA 384
            + ALE F  M++  ++P E T + +LS++       + +G  +H  A+K G  ++  V+
Sbjct: 429 CQDALEAFLAMMK-IMKPNETTFASILSAVTAVETVSMAYGQMYHCQALKLGLGASEYVS 487

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
            +L++MYAK GS++ S + F +   R L++W  I+   +++G     + +F +++  G+ 
Sbjct: 488 GALIDMYAKRGSLEESWKAFGETVHRSLIAWTAIISANSKHGNYDAVVSLFNDMVGSGVA 547

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD + L +VL AC Y GFV  G  +F +M  ++G     EHYAC++D+L +AG+L +A +
Sbjct: 548 PDGVVLLSVLTACRYSGFVSLGREIFDSMAAKHGAELWPEHYACVVDMLGRAGRLEEAEE 607

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   MP  P  S  +S+L A  I+G+  + E VA  + + +      Y LL+  YA +G 
Sbjct: 608 LMLQMPSGPSVSALQSLLGACRIHGNTDVGERVASVLTETEPTESGAYVLLSNIYAEKGD 667

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWI-----GIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           W A+ RV++ MR+ G+ K  G SW+     G    +Y F++ +  H   ++IY V   L 
Sbjct: 668 WGAVARVRRQMRERGVKKEVGFSWVDAGGAGDSLHLYKFSSDDTTHPQSEEIYRVAEGLG 727

Query: 620 WEME 623
           WEM+
Sbjct: 728 WEMK 731



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 189/424 (44%), Gaps = 46/424 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           LK+  V    +S CS +I  C +    +  + IHG   KLG   H  + N  + +Y + G
Sbjct: 242 LKQGDVRPDRISVCS-VIPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCG 300

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           T     +LF+ + +++ ISW      ++  D  D                          
Sbjct: 301 TPGCARRLFEFMGERDVISWTT----VMSMDGED-------------------------- 330

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
                 A+ +F+ M+  GV P+  TF  +LS++   C    G+ IH   +++ LS     
Sbjct: 331 ------AVSLFNGMRRDGVAPNEVTFVAMLSSMPGDCPAREGQMIHAVCLKTSLS-DKAA 383

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             NSLI MY KL  +  A  +F  M   +II+WN+LISG   +   + AL+ F +M    
Sbjct: 384 AANSLITMYAKLRRMDDARMIFSLMPHSEIIAWNALISGYAQNEMCQDALEAFLAM-MKI 442

Query: 242 YSPDEYTISIVINACTKLRNLDK--GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299
             P+E T + +++A T +  +    G+     ++K+G  ++  V  A ID+++K   LE+
Sbjct: 443 MKPNETTFASILSAVTAVETVSMAYGQMYHCQALKLGLGASEYVSGALIDMYAKRGSLEE 502

Query: 300 SVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI 359
           S + F +           +IS   ++G  +  + LF  M+   + P    L  VL++   
Sbjct: 503 SWKAFGETVHRSLIAWTAIISANSKHGNYDAVVSLFNDMVGSGVAPDGVVLLSVLTACRY 562

Query: 360 PP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
              V  G + F SMA K G +      + +++M  + G ++ + E+ +++     VS   
Sbjct: 563 SGFVSLGREIFDSMAAKHGAELWPEHYACVVDMLGRAGRLEEAEELMLQMPSGPSVSALQ 622

Query: 418 IMMG 421
            ++G
Sbjct: 623 SLLG 626



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 12/228 (5%)

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
           AL+V  G  + + V ++    ++K N    + R+F      D    N ++S        +
Sbjct: 73  ALAVASGLAAFAPVTNSLAARYAKGNSFPAAARVFAAARSRDTRSYNTILSATPD---PD 129

Query: 330 VALELFQLMLRE-DIRPTEFTLSCVLSSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSL 387
            AL     MLR  D+RP   T +  LS        H   Q H++A ++G  ++  V ++L
Sbjct: 130 DALAFAARMLRTGDVRPDAVTFTVTLSLAAGRGEAHLVRQLHALASRAGIATDVFVGNAL 189

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR-AAETLDVFEELLEEG-LPP 445
           +  Y++ G +D++ ++F ++  RDLVSWN ++ GL Q+G  +AE + VF  +L++G + P
Sbjct: 190 VTAYSRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGDVRP 249

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493
           DRI++ +V+ AC   G ++ G  +       + V  G E +  I ++L
Sbjct: 250 DRISVCSVIPACGAEGKLELGRQIHG-----FAVKLGVEGHVSIANVL 292


>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 836

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 178/637 (27%), Positives = 298/637 (46%), Gaps = 71/637 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    S  FA  +H H+ KL   A T + N  +D+Y + G       +F  I   +   W
Sbjct: 152 CGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPSLFCW 211

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N  + G  +      AL VF  +PE D VSWN++IS ++  G+    L  F +M   G +
Sbjct: 212 NSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFK 271

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T+  +LS  +S      G  +H  ++R   SL +  LG+ LIDMY K G L  A  
Sbjct: 272 PNFMTYGSVLSACASISDLKWGAHLHARILRMEHSL-DAFLGSGLIDMYAKCGCLALARR 330

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF ++ E + +SW  LISG    G  + AL  F  MR +    DE+T++ ++  C+    
Sbjct: 331 VFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNY 390

Query: 262 LDKGKQVFALSVKVGF-------------------------------LSNSIVLSATIDL 290
              G+ +   ++K G                                L ++I  +A I  
Sbjct: 391 AATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMITA 450

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           FS+   ++ + + F+ +   +    N M+STY ++GF E  ++L+ LM  + ++P   T 
Sbjct: 451 FSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWVTF 510

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
           +  + +   +  ++ G+Q  S   K G  S+  VA+S++ MY++ G I  + ++F  +  
Sbjct: 511 ATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSIHV 570

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           ++L+SWN +M    QNG   + ++ +E++L     PD I+  AVL               
Sbjct: 571 KNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYVAVL--------------- 615

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                                DLL +AG L +A ++   MPF+P  ++W ++L A  I+ 
Sbjct: 616 --------------------SDLLGRAGLLDQAKNLIDGMPFKPNATVWGALLGACRIHH 655

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           D  L E  A+++M+L +     Y LL   YA  G  E +  ++K+M+  GI K  GCSWI
Sbjct: 656 DSILAETAAKKLMELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCSWI 715

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            + NR++ F   E  H    ++Y+ L  +  ++ED G
Sbjct: 716 EVDNRVHVFTVDETSHPQINEVYVKLEEMMKKIEDTG 752



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 149/574 (25%), Positives = 250/574 (43%), Gaps = 53/574 (9%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A+ +H  L   G +A  +L N  L +YS  G  DD  ++F E    N  +WN  L     
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 94  SDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKM------QLQGVRP 145
           S  +  A  +FDE+P    D VSW +MISGY   G   ++++ F  M       +Q   P
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 146 SGFTFSI-LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             +T ++     ++S     Q+H  +I+  L  +   + NSL+DMY K G +  A  VFL
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLG-AQTCIQNSLVDMYIKCGAITLAETVFL 201

Query: 205 NME-------------------------------ELDIISWNSLISGCFNSGYGELALDQ 233
           N+E                               E D +SWN+LIS     G+G   L  
Sbjct: 202 NIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLST 261

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M   G+ P+  T   V++AC  + +L  G  + A  +++    ++ + S  ID+++K
Sbjct: 262 FVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAK 321

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  L  + R+F  L   +      +IS   ++G  + AL LF  M +  +   EFTL+ +
Sbjct: 322 CGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATI 381

Query: 354 LSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           L           G   H  AIKSG DS   V ++++ MYA+ G  + ++  F  +  RD 
Sbjct: 382 LGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDT 441

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           +SW  ++   +QNG        F+ + E  +    IT  ++L      GF ++GM ++  
Sbjct: 442 ISWTAMITAFSQNGDIDRARQCFDMMPERNV----ITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP---FQPGCSIWESILRASAIYG 529
           M+ +  V P    +A  I        +     + S +         S+  SI+   +  G
Sbjct: 498 MRSK-AVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCG 556

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
            +K    V +    + + + + ++ +  A+A  G
Sbjct: 557 QIKEARKVFD---SIHVKNLISWNAMMAAFAQNG 587



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 164/368 (44%), Gaps = 60/368 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S     +   +H  + ++  +   +LG+  +D+Y++ G      ++F+ + ++N
Sbjct: 280 VLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQN 339

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW   + G+ +    D AL +F+++ +  VV                  L+ F+   +
Sbjct: 340 QVSWTCLISGVAQFGLRDDALALFNQMRQASVV------------------LDEFTLATI 381

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG------ 194
            GV           S  + A  G+ +HG  I+SG+  S V +GN++I MY + G      
Sbjct: 382 LGV----------CSGQNYAATGELLHGYAIKSGMD-SFVPVGNAIITMYARCGDTEKAS 430

Query: 195 ---------------VLYYAFG----------VFLNMEELDIISWNSLISGCFNSGYGEL 229
                           +  AF            F  M E ++I+WNS++S     G+ E 
Sbjct: 431 LAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEE 490

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
            +  +  MR     PD  T +  I AC  L  +  G QV +   K G  S+  V ++ + 
Sbjct: 491 GMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVT 550

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
           ++S+C +++++ ++F+ +   +    N M++ + + G G  A+E ++ MLR + +P   +
Sbjct: 551 MYSRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHIS 610

Query: 350 LSCVLSSI 357
              VLS +
Sbjct: 611 YVAVLSDL 618


>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420
 gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana]
 gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 794

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 175/611 (28%), Positives = 313/611 (51%), Gaps = 45/611 (7%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           +++++   +V   S ++ S L+  C   +      +++  + KLG++ +  +    L +Y
Sbjct: 186 LTTHMAFEYVKPNSSTFTS-LVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMY 244

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMIS 120
           S  G                               +L++A ++FD +   D V+WN+MI 
Sbjct: 245 SSCG-------------------------------DLESARRIFDCVNNRDAVAWNTMIV 273

Query: 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSL 177
           G       +  L  F  M + GV P+ FT+SI+L   S + S   GK IH  +I S  SL
Sbjct: 274 GSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSD-SL 332

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
           +++ L N+L+DMY   G +  AF VF  +   +++SWNS+ISGC  +G+GE A+  +  +
Sbjct: 333 ADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRL 392

Query: 238 -RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
            R S   PDEYT S  I+A  +      GK +     K+G+  +  V +  + ++ K   
Sbjct: 393 LRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNRE 452

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            E + ++F+ +   D  +   MI  + R G  E+A++ F  M RE  R   F+LS V+ +
Sbjct: 453 AESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGA 512

Query: 357 IP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              +  +  G  FH +AI++GFD    V  +L++MY K G  +++  IF      DL  W
Sbjct: 513 CSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKCW 572

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
           N+++   +Q+G   + L  FE++LE G  PD +T  ++L AC++ G   +G  +++ MKE
Sbjct: 573 NSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKFLWNQMKE 632

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG---CSIWESILRASAIYGDVK 532
           + G+  G +HY+C+++L+ +AG + +A+++    P  PG     +W ++L A     +++
Sbjct: 633 Q-GIKAGFKHYSCMVNLVSKAGLVDEALELIEQSP--PGNNQAELWRTLLSACVNTRNLQ 689

Query: 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI- 591
           +    AE+++ L       + LL+  YA+ GRWE +  +++ +R    +K  G SWI + 
Sbjct: 690 IGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGLASSKDPGLSWIEVN 749

Query: 592 KNRIYTFNAGE 602
            N    F++G+
Sbjct: 750 NNNTQVFSSGD 760



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 177/400 (44%), Gaps = 49/400 (12%)

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
           N+LI MY +   L  A  VF  M + +I++            +G  A+ ++ SM  S +S
Sbjct: 26  NNLISMYVRCSSLEQARKVFDKMPQRNIVTL-----------FGLSAVFEYVSMGSSLHS 74

Query: 244 P---------------DEYTISIV--INACTKLRNLDKGKQVFALSVKVG--------FL 278
                           +E   S+V     C  +  L + +Q+ AL +  G        + 
Sbjct: 75  QIIKLGSFQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYA 134

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY-GFGEVALELFQL 337
           +N++     I ++ +C  LE + ++F+++   +    N + S Y R   F   A  L   
Sbjct: 135 NNNL-----ISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTH 189

Query: 338 MLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
           M  E ++P   T + ++    +   V  GS  +S  IK G+  N VV +S++ MY+  G 
Sbjct: 190 MAFEYVKPNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGD 249

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           ++S+  IF  ++ RD V+WNT+++G  +N +  + L  F  +L  G+ P + T + VL  
Sbjct: 250 LESARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNG 309

Query: 457 CNYGGFVDKGMLVFSAM--KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
           C+  G    G L+ + +   +    +P +     ++D+ C  G + +A  +   +   P 
Sbjct: 310 CSKLGSYSLGKLIHARIIVSDSLADLPLDN---ALLDMYCSCGDMREAFYVFGRI-HNPN 365

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
              W SI+   +  G  +    +  R++ +  P P  Y+ 
Sbjct: 366 LVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTF 405


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 327/621 (52%), Gaps = 52/621 (8%)

Query: 24  RCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           R L   S  FA   HG++F+ GF+A   + N  L LY+      +V   F          
Sbjct: 159 RELKIYSQGFA--FHGYIFRSGFSAILSVQNSLLSLYA------EVHMYF---------- 200

Query: 84  WNICLRGLLKSDNLDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ- 141
                           A K+F E+    DVVSW+ MI G+   G  +    MF  M  + 
Sbjct: 201 ----------------AYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEA 244

Query: 142 GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G+ P G T   +L   + +     G  +HG +I  GL   ++ +GNSLIDMY K   ++ 
Sbjct: 245 GIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLE-DDLFVGNSLIDMYSKCFNVHS 303

Query: 199 AFGVFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           AF  F  + E +IISWN ++S    N  + E AL    +M   G   DE T++ V+    
Sbjct: 304 AFKAFKEIPEKNIISWNLMLSAYILNESHLE-ALALLGTMVREGAEKDEVTLANVLQIAK 362

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +  K + V  + ++ G+ SN ++L++ ID ++KCN +E +  +F+ +++ D    + 
Sbjct: 363 HFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWST 422

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSG 376
           MI+ + R G  + A+ +F+ M  E++ P   ++  ++ +  +      S++ H +A++ G
Sbjct: 423 MIAGFARNGKPDEAISVFKQM-NEEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRG 481

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S   + +S+++MY+K G I++S   F ++ ++++V W+ ++     NG A E L +FE
Sbjct: 482 LASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFE 541

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++ + G  P+ +T  ++L AC++GG +++G+  F++M +++G+ PG EHY+CI+D+L +A
Sbjct: 542 KIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRA 601

Query: 497 GQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           G+  +A+++   +P   + G SIW ++L +   YG++ L    A R++ L+  S   Y L
Sbjct: 602 GKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYML 661

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
            +  YA  G      +++++ ++ G+  V G S + I ++ + F AG++ +    +IYL+
Sbjct: 662 ASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINSQTWRFVAGDVLNPRADEIYLM 721

Query: 615 LRLLTWEMEDEGCVYLECDKL 635
           ++ L       G + ++C KL
Sbjct: 722 VKKL------HGVMKIDCLKL 736



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 209/469 (44%), Gaps = 47/469 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C + K       +HG +   G     ++GN  +D+YS+        + F EIP+KN
Sbjct: 256 VLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKN 315

Query: 81  CISWNICLRG-LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
            ISWN+ L   +L   +L+                                AL +   M 
Sbjct: 316 IISWNLMLSAYILNESHLE--------------------------------ALALLGTMV 343

Query: 140 LQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G      T + +L        +   + +HG +IR G   SN +L NS+ID Y K  ++
Sbjct: 344 REGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYE-SNELLLNSVIDAYAKCNLV 402

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  M + D+++W+++I+G   +G  + A+  F  M      P+  +I  ++ AC
Sbjct: 403 ELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEE-VIPNNVSIMNLMEAC 461

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L + K    ++V+ G  S   + ++ ID++SKC  +E S+R F Q+ + +    +
Sbjct: 462 AVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWS 521

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQFHSMAIK 374
            MIS +   G    AL LF+ + +   +P   T   +LS+      +E G S F SM  K
Sbjct: 522 AMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQK 581

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G +      S +++M ++ G  + + E+  KL K ++ +  +I   L  + R+   + +
Sbjct: 582 HGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPK-EMEAGASIWGTLLSSCRSYGNISL 640

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA----MKEEYGV 479
                   L  + ++ A  +LA N   + + G+++ SA    + +E GV
Sbjct: 641 GSGAASRVLQLEPLSSAGYMLASNL--YANCGLMIDSAKMRRLAKEKGV 687



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 65/273 (23%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L++ C        +K  HG   + G  +   +G   +D+YS+ G  +  ++ F++IPQK
Sbjct: 456 NLMEACAVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQK 515

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N                               VV W++MIS +   G +  AL +F K++
Sbjct: 516 N-------------------------------VVCWSAMISAFRINGLAHEALMLFEKIK 544

Query: 140 LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS-----------LID 188
             G +P+  T   LLS  S        HG +I  GLS    ++              ++D
Sbjct: 545 QNGTKPNAVTALSLLSACS--------HGGLIEEGLSFFTSMVQKHGIEPGLEHYSCIVD 596

Query: 189 MYGKLGVLYYAFGVFLNME---ELDIISWNSLISGCFNSGYGELALD--------QFYSM 237
           M  + G    A  +   +    E     W +L+S C    YG ++L         Q   +
Sbjct: 597 MLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSC--RSYGNISLGSGAASRVLQLEPL 654

Query: 238 RYSGY--SPDEYTISIVINACTKLRNLDKGKQV 268
             +GY  + + Y    ++    K+R L K K V
Sbjct: 655 SSAGYMLASNLYANCGLMIDSAKMRRLAKEKGV 687


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 168/588 (28%), Positives = 302/588 (51%), Gaps = 38/588 (6%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L+    SF    + K +H HL   G   +  L    +D+YS+                 
Sbjct: 223 KLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSK----------------- 265

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                  C R       +  A+KV +  PE DV  W ++ISG+        A+ +F  M+
Sbjct: 266 -------CRR-------MVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDME 311

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG-V 195
           L G+ P+ FT+S LL+  SS      G+Q H  +I  GL   ++ +GN+L+DMY K   +
Sbjct: 312 LSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLE-DDLYIGNALVDMYMKCSHI 370

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF  +   +++ W SLI+G F     E +   F  M+ +G  P+ +T+S ++ A
Sbjct: 371 TTNAVKVFREITSPNVMCWTSLIAG-FAEKRLEDSFQLFAEMQAAGVRPNSFTMSAILGA 429

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+K R+L     +    +K     +  V +A +D ++    ++++  +   ++  D    
Sbjct: 430 CSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDSITY 489

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
             + +   + G   +AL++   M  + I+  EF+L+  LS+   +  +E G Q H  ++K
Sbjct: 490 TCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVK 549

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           SGF     V++SL+ +Y+K GSI  +   F  + + D  SWN ++ G + NG  +  L  
Sbjct: 550 SGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALST 609

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           F+++   G+ PD ITL +++ AC++GG ++ G+  F +M++EY + P  +HY C++DLL 
Sbjct: 610 FDDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLG 669

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           + G+L +A+ +   M F+P   I +++L A  ++G+V L E++A R ++L    P  Y L
Sbjct: 670 RGGRLEEAMGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLL 729

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           L   Y   G  +   + +++MR+ G+ +  G  W+ I++R++ F+AGE
Sbjct: 730 LANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGE 777



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 215/455 (47%), Gaps = 43/455 (9%)

Query: 14  SLSYCSQLIDRCLSF---KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           SLS   +   R LSF    S      IH  + KLG     YL N  L LY+         
Sbjct: 10  SLSRFQETCLRVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYA--------- 60

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                 K+  +  A  +FDE+P  DVVSW +++S +    +   
Sbjct: 61  ----------------------KTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSD 98

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           AL++F  M   G  P+ FT S  L +   +     G QIH S ++ GL + N  +G SL+
Sbjct: 99  ALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEM-NRFVGTSLV 157

Query: 188 DMYGKLGVLYYAFGVFLNM--EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           + Y K G         L++  +  D++SW +++S    +G    A + +  M  SG  P+
Sbjct: 158 EFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPN 217

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           E+T   ++ A +    L  GK + A  +  G   N ++ +A +D++SKC R+ D++++  
Sbjct: 218 EFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSN 277

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPIPPVEH 364
               +D  +   +IS + +      A+ +F+ M    + P  FT S +L +S  I  ++ 
Sbjct: 278 LTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDL 337

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS-STEIFVKLDKRDLVSWNTIMMGLT 423
           G QFHS  I  G + +  + ++L++MY K   I + + ++F ++   +++ W +++ G  
Sbjct: 338 GEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFA 397

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
           +  R  ++  +F E+   G+ P+  T++A+L AC+
Sbjct: 398 EK-RLEDSFQLFAEMQAAGVRPNSFTMSAILGACS 431



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 40/319 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C   +S      +HGH+ K   +    + N  +D Y+  G  D+   +   +  
Sbjct: 424 SAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNL 483

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           ++ I++  CL   L                                 G+   AL++   M
Sbjct: 484 RDSITYT-CLAARLNQK------------------------------GHHGMALKVLIHM 512

Query: 139 QLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G++   F+ +  LS  +   +   GKQ+H   ++SG    + V  NSL+ +Y K G 
Sbjct: 513 CNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSV-SNSLVHLYSKCGS 571

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           ++ A   F ++ E D  SWN LISG   +G    AL  F  MR +G  PD  T+  +I+A
Sbjct: 572 IHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISA 631

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLD-RWDYA 313
           C+    L+ G + F    K   ++  +      +DL  +  RLE+++ + E++  + D  
Sbjct: 632 CSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFKPDSL 691

Query: 314 VINVMIST---YGRYGFGE 329
           +   +++    +G    GE
Sbjct: 692 ICKTLLNACNLHGNVALGE 710



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 336 QLMLREDIRPTEFTLSC--VLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           Q++  +    + F  +C  VLS      ++ G   HS  IK G   +  + ++L+ +YAK
Sbjct: 2   QMLCTKTFSLSRFQETCLRVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAK 61

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
           T  +  +  +F ++  RD+VSW TI+   T+    ++ L +F+ ++  G  P+  TL++ 
Sbjct: 62  TFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSA 121

Query: 454 LLACNYGGFVDKGMLVF-SAMK 474
           L +C   G  ++GM +  SA+K
Sbjct: 122 LRSCFALGEFERGMQIHCSAVK 143


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 174/559 (31%), Positives = 281/559 (50%), Gaps = 12/559 (2%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           +I +   + WN  L    K   L  A+K+FDE+P  DV+S N +  G+     ++    +
Sbjct: 84  DIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVL 143

Query: 135 FSKMQLQGVRPSGF---TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
             +M   G    GF   T +I+LS   +       K IH   I SG     + +GN LI 
Sbjct: 144 LKRMLGSG----GFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYD-KEISVGNKLIT 198

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
            Y K G      GVF  M   ++I+  ++ISG   +   E  L  F  MR     P+  T
Sbjct: 199 SYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVT 258

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
               + AC+  + + +G+Q+ AL  K G  S   + SA +D++SKC  +ED+  +FE   
Sbjct: 259 YLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTT 318

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQ 367
             D   + V++    + G  E A++ F  ML+  +      +S VL  S     +  G Q
Sbjct: 319 EVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQ 378

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS+ IK  F  N  V + L+ MY+K G +  S  +F ++ KR+ VSWN+++    ++G 
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGH 438

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
               L ++EE+    + P  +T  ++L AC++ G +DKG  + + MKE +G+ P  EHY 
Sbjct: 439 GLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYT 498

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           CIID+L +AG L +A     ++P +P C IW+++L A + +GD ++ E  AE++      
Sbjct: 499 CIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPD 558

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           S   + L+   Y+ RG+W+   +  K M+  G+ K TG S I I+++ ++F   +  H  
Sbjct: 559 SSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQ 618

Query: 608 GQKIYLVLRLLTWEMEDEG 626
            + IY VL  L   M DEG
Sbjct: 619 AEAIYDVLSGLFPVMVDEG 637



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 42/343 (12%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S +++  V+  S++Y S L   C   +     + IH  L+K G  +   + +  +D+YS+
Sbjct: 245 SLMRRGLVHPNSVTYLSALA-ACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSK 303

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G+ +D              +W I                 F+   E D VS   ++ G 
Sbjct: 304 CGSIED--------------AWTI-----------------FESTTEVDEVSMTVILVGL 332

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSN 179
           A  G  + A++ F +M   GV       S +L      +S   GKQ+H  +I+   S  N
Sbjct: 333 AQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFS-GN 391

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
             + N LI+MY K G L  +  VF  M + + +SWNS+I+     G+G  AL  +  M  
Sbjct: 392 TFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTT 451

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLE 298
               P + T   +++AC+ +  +DKG+++     +V G    +   +  ID+  +   L+
Sbjct: 452 LEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLK 511

Query: 299 DSVRLFEQLD-RWDYAVINVMI---STYGRYGFGEVALE-LFQ 336
           ++    + L  + D  +   ++   S +G    GE A E LFQ
Sbjct: 512 EAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQ 554



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 53/236 (22%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    K +H  + K  F+ +T++ N  +++YS+ G   D   +F  +P++N +SW     
Sbjct: 372 SLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSW----- 426

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                     NSMI+ +A  G+   AL+++ +M    V+P+  T
Sbjct: 427 --------------------------NSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVT 460

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSN---VVLG--------NSLIDMYGKLGVLYY 198
           F  LL   S        H  +I  G  L N    V G          +IDM G+ G+L  
Sbjct: 461 FLSLLHACS--------HVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKE 512

Query: 199 AFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           A     ++  + D   W +L+  C  S +G+  + ++ + +    +PD  +  I+I
Sbjct: 513 AKSFIDSLPLKPDCKIWQALLGAC--SFHGDTEVGEYAAEQLFQTAPDSSSAHILI 566


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 174/559 (31%), Positives = 281/559 (50%), Gaps = 12/559 (2%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           +I +   + WN  L    K   L  A+K+FDE+P  DV+S N +  G+     ++    +
Sbjct: 84  DIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVL 143

Query: 135 FSKMQLQGVRPSGF---TFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
             +M   G    GF   T +I+LS   +       K IH   I SG     + +GN LI 
Sbjct: 144 LKRMLGSG----GFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYD-KEISVGNKLIT 198

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
            Y K G      GVF  M   ++I+  ++ISG   +   E  L  F  MR     P+  T
Sbjct: 199 SYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVT 258

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
               + AC+  + + +G+Q+ AL  K G  S   + SA +D++SKC  +ED+  +FE   
Sbjct: 259 YLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTT 318

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQ 367
             D   + V++    + G  E A++ F  ML+  +      +S VL  S     +  G Q
Sbjct: 319 EVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQ 378

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS+ IK  F  N  V + L+ MY+K G +  S  +F ++ KR+ VSWN+++    ++G 
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGH 438

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
               L ++EE+    + P  +T  ++L AC++ G +DKG  + + MKE +G+ P  EHY 
Sbjct: 439 GLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYT 498

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547
           CIID+L +AG L +A     ++P +P C IW+++L A + +GD ++ E  AE++      
Sbjct: 499 CIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPD 558

Query: 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG 607
           S   + L+   Y+ RG+W+   +  K M+  G+ K TG S I I+++ ++F   +  H  
Sbjct: 559 SSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQ 618

Query: 608 GQKIYLVLRLLTWEMEDEG 626
            + IY VL  L   M DEG
Sbjct: 619 AEAIYDVLSGLFPVMVDEG 637



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 150/343 (43%), Gaps = 42/343 (12%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           S +++  V+  S++Y S L   C   +     + IH  L+K G  +   + +  +D+YS+
Sbjct: 245 SLMRRGLVHPNSVTYLSALA-ACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSK 303

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G+ +D              +W I                 F+   E D VS   ++ G 
Sbjct: 304 CGSIED--------------AWTI-----------------FESTTEVDEVSMTVILVGL 332

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSN 179
           A  G  + A++ F +M   GV       S +L      +S   GKQ+H  +I+   S  N
Sbjct: 333 AQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFS-GN 391

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239
             + N LI+MY K G L  +  VF  M + + +SWNS+I+     G+G  AL  +  M  
Sbjct: 392 TFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTT 451

Query: 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLE 298
               P + T   +++AC+ +  +DKG+++     +V G    +   +  ID+  +   L+
Sbjct: 452 LEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLK 511

Query: 299 DSVRLFEQLD-RWDYAVINVMI---STYGRYGFGEVALE-LFQ 336
           ++    + L  + D  +   ++   S +G    GE A E LFQ
Sbjct: 512 EAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQ 554



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 53/236 (22%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           S    K +H  + K  F+ +T++ N  +++YS+ G   D   +F  +P++N +SW     
Sbjct: 372 SLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSW----- 426

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
                                     NSMI+ +A  G+   AL+++ +M    V+P+  T
Sbjct: 427 --------------------------NSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVT 460

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSN---VVLG--------NSLIDMYGKLGVLYY 198
           F  LL   S        H  +I  G  L N    V G          +IDM G+ G+L  
Sbjct: 461 FLSLLHACS--------HVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKE 512

Query: 199 AFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           A     ++  + D   W +L+  C  S +G+  + ++ + +    +PD  +  I+I
Sbjct: 513 AKSFIDSLPLKPDCKIWQALLGAC--SFHGDTEVGEYAAEQLFQTAPDSSSAHILI 566


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 184/646 (28%), Positives = 334/646 (51%), Gaps = 69/646 (10%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IH      GF +H  + N  +++Y + G  D  L +F+ +   + +SWN  L G  +SD+
Sbjct: 100 IHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRSDD 159

Query: 97  -LDTALKV------FDEIPEPDVVSW-----------------------------NSMIS 120
            L+ AL++      FD +    V+++                             N++I+
Sbjct: 160 ALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALIT 219

Query: 121 GYASC--------GYSDY-ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK------Q 165
            Y+ C        G S   A+ +F +M  +G++    +F+     +S+  HGK      Q
Sbjct: 220 MYSRCCRLVEARRGNSGLEAILVFLEMLKEGMKLDHVSFT---GAISACGHGKEFELGRQ 276

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           IH   ++ G   ++V + N LI  Y K   +  A  VF ++ + +++SW ++IS      
Sbjct: 277 IHSLAVKIGYD-THVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISIS---- 331

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
             E A   F  MR  G  P++ T   +I+A T    +++G+ +  + VK  FLS   V +
Sbjct: 332 -EEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSN 390

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
           + I +++K   + DS+++FE+L+  +    N +IS Y + G  + AL+ F   L E  RP
Sbjct: 391 SLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RP 449

Query: 346 TEFTLSCVLSSIPIP---PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            EFT   VLSSI       + HG + HS  +K G ++N +V+S+L++MYAK GSI  S  
Sbjct: 450 NEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLG 509

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           +F +   ++ V+W  I+    ++G     +++F+++  EG+ PD IT  AV+ AC   G 
Sbjct: 510 VFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGM 569

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           VD G  +F++M +++ + P  EHY+ ++D+L +AG+L +A +    +P   G S+ +S+L
Sbjct: 570 VDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLL 629

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  I+G+V + + VA+ +++++      Y L++  YA +G WE + +++K MR+ G+ K
Sbjct: 630 GACRIHGNVDMAKRVADDLIEMEPMGSGSYVLMSNLYAEKGEWEKVAKIRKGMRERGVRK 689

Query: 583 VTGCSWIGIKNR-----IYTFNAGELQHHGGQKIYLVLRLLTWEME 623
             G SW+ + +      ++ F++ +  H   ++IY +   L  EM+
Sbjct: 690 EIGFSWVDVGDADGSLYLHGFSSDDKFHPQSEEIYRMAETLGLEMK 735



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 178/388 (45%), Gaps = 45/388 (11%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C   K F+  + IH    K+G++ H  + N  +  YS+    +D   +F+ I  +N 
Sbjct: 262 ISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNV 321

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SW   +                  I E D  S                   +F++M+  
Sbjct: 322 VSWTTMI-----------------SISEEDATS-------------------LFNEMRRD 345

Query: 142 GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           GV P+  TF  L+  ++       G+ IHG  +++   LS + + NSLI MY K   +  
Sbjct: 346 GVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSF-LSELNVSNSLITMYAKFESMSD 404

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN--AC 256
           +  VF  +   +IISWNSLISG   +G  + AL  F S       P+E+T   V++  A 
Sbjct: 405 SMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIAS 463

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +  ++  G++  +  +K+G  +N IV SA +D+++K   + +S+ +F +    +     
Sbjct: 464 AEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWT 523

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIK 374
            +IS + R+G  E  + LF+ M RE ++P   T   V+++      V+ G Q F+SM   
Sbjct: 524 AIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKD 583

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTE 402
              + +    SS+++M  + G +  + E
Sbjct: 584 HLIEPSPEHYSSMVDMLGRAGRLKEAEE 611



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 134/523 (25%), Positives = 229/523 (43%), Gaps = 97/523 (18%)

Query: 104 FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SA 160
            D+ P+  + S N  +        S  AL++F K QLQ     GF  +I   TV+    A
Sbjct: 35  LDQSPQTTIASLNRSMLTALRRNLSLEALDLFKK-QLQW----GFVGNIDQVTVAIVLKA 89

Query: 161 CHGK-----QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
           C G      QIH   I SG  +S+V + NSL++MY K G+   A  VF N+   DI+SWN
Sbjct: 90  CCGDSKLGCQIHAFAISSGF-ISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWN 148

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
           +++SG   S   + AL+    M ++G + D  T + V+  C+       G Q+ +  +K 
Sbjct: 149 TVLSGFQRS---DDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKC 205

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVR-------------LFEQLDRWDYA--------- 313
           G      V +A I ++S+C RL ++ R             + ++  + D+          
Sbjct: 206 GLDCEVFVGNALITMYSRCCRLVEARRGNSGLEAILVFLEMLKEGMKLDHVSFTGAISAC 265

Query: 314 --------------------------VINVMISTYGRYGFGEVALELFQLML-------- 339
                                     V NV+ISTY +    E A  +F+ ++        
Sbjct: 266 GHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWT 325

Query: 340 -----------------RED-IRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSN 380
                            R D + P + T   ++ +I +   VE G   H + +K+ F S 
Sbjct: 326 TMISISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSE 385

Query: 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440
             V++SL+ MYAK  S+  S ++F +L+ R+++SWN+++ G  QNG   E L  F   L 
Sbjct: 386 LNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALM 445

Query: 441 EGLPPDRITLAAVL--LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
           E   P+  T  +VL  +A      +  G    S +  + G+       + ++D+  + G 
Sbjct: 446 ES-RPNEFTFGSVLSSIASAEAISMRHGQRCHSHIL-KLGLNTNPIVSSALLDMYAKRGS 503

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           + +++ + S  P +   + W +I+ A A +GD +   N+ + M
Sbjct: 504 ICESLGVFSETPLKNEVA-WTAIISAHARHGDYEAVMNLFKDM 545


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 175/638 (27%), Positives = 303/638 (47%), Gaps = 72/638 (11%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           + KS    K +H  +  LGF  H  +  + +  Y+           FD +   + I+ N 
Sbjct: 105 NLKSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTN----------FDLLADAHTITEN- 153

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                               I  P  + WN +IS Y   G    AL  + +M  +G+RP 
Sbjct: 154 ------------------SNILHP--LPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPD 193

Query: 147 GFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
            FT+  +L           GK++H S+  S L   N+ + NSL+ MY K G L  A  +F
Sbjct: 194 KFTYPSVLKACGEKLDIAFGKKLHASINASCLGW-NLFVHNSLVSMYAKTGELSTARCLF 252

Query: 204 LNMEELDIISWNSLIS-----------------------------------GCFNSGYGE 228
            NM E D +SWN++IS                                   GC  SG  E
Sbjct: 253 ENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFE 312

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            AL+    MR  G   D     I + AC+ +  +  G+++   +++  +     V +A I
Sbjct: 313 EALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALI 372

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
            ++S+C  L  +  LF+     +    N M+S Y      E A  LF+ ML   I P   
Sbjct: 373 TMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYV 432

Query: 349 TLSCVLS-SIPIPPVEHGSQFHSMAI-KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
           T++ +L     +  ++HG +FH   + ++GF    ++ +SL++MYA++G +  +  +F  
Sbjct: 433 TIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDS 492

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           + +RD V++ +++ G    G   E L +F+E+ +  + PD +T+ AVL AC++ G V +G
Sbjct: 493 ISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEG 552

Query: 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526
           + +F  M   YG++P  EH+AC++DL  +AG L KA ++ + MP++P  ++W ++L A  
Sbjct: 553 IKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACR 612

Query: 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586
           I+G+ ++ E  AE++++++  +   Y L+   YA  G W  + +V+  MR  G+ K  GC
Sbjct: 613 IHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGC 672

Query: 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624
           +W+ + +  + F   +       K+Y +L  LT  M+D
Sbjct: 673 AWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELMKD 710



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 168/407 (41%), Gaps = 62/407 (15%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L+G     NL  A K F            S+I  +ASC  SD             V  S 
Sbjct: 60  LKGFASQGNLLKAFKTF------------SLIQRHASCSTSD-----------DVVLHSV 96

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            +  +    + S   GKQ+H  +I  G     +++   L+  Y    +L  A  +  N  
Sbjct: 97  SSLLLSCVNLKSLSQGKQLHTLIISLGFEQHPIIV-PKLVTFYTNFDLLADAHTITENSN 155

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
            L  + WN LIS    +G    AL  +  M + G  PD++T   V+ AC +  ++  GK+
Sbjct: 156 ILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKK 215

Query: 268 VFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           + A S+    L  N  V ++ + +++K   L  +  LFE +   D    N MIS Y   G
Sbjct: 216 LHA-SINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKG 274

Query: 327 FGEVALELFQLMLREDI------------------------------RPTEFTLSCVLSS 356
             + A ELF  M  E I                              R     +  V + 
Sbjct: 275 MWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATI 334

Query: 357 IPIPPVEH------GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
           I +    H      G + H  AI+S +D    V ++L+ MY++   +  +  +F     +
Sbjct: 335 IGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTK 394

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           ++++WN+++ G T   R+ E   +F E+L  G+ P+ +T+A++L  C
Sbjct: 395 NIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLC 441



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 136/329 (41%), Gaps = 45/329 (13%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +    + IHG   +  ++    + N  + +YSR         LF     KN I+W
Sbjct: 340 CSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITW 399

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           N                               SM+SGY     S+ A  +F +M L G+ 
Sbjct: 400 N-------------------------------SMLSGYTHMDRSEEASFLFREMLLSGIE 428

Query: 145 PSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  T + +L   + V++  HGK+ H  ++R       ++L NSL+DMY + G +  A  
Sbjct: 429 PNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKR 488

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F ++   D +++ SLI+G    G G  AL  F  M+     PD  T+  V++AC+    
Sbjct: 489 LFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGL 548

Query: 262 LDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIS 320
           + +G ++F L     G +      +  +DLF +   L  +    E + R  Y   + M +
Sbjct: 549 VTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAK---EMITRMPYRPSSAMWA 605

Query: 321 T-------YGRYGFGEVALELFQLMLRED 342
           T       +G    GE A E    M  E+
Sbjct: 606 TLLGACRIHGNAEIGEWAAEKLLEMRPEN 634


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 152/501 (30%), Positives = 262/501 (52%), Gaps = 43/501 (8%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI---- 218
           G+ +    +   +S+ N+   N ++  Y KLG +  A  +F  M E D++SWN+++    
Sbjct: 112 GRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYA 171

Query: 219 -SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF 277
             GCFN   G      +   R      + ++ + V+  C KL+ L   KQV    +  GF
Sbjct: 172 KQGCFNEAIG-----LYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGF 226

Query: 278 LSNSIVLSATIDLFSKCNRLE-------------------------------DSVRLFEQ 306
           LSN ++ S+ +D ++KC  +                                 +  LF Q
Sbjct: 227 LSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQ 286

Query: 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS-CVLSSIPIPPVEHG 365
           +   +    + +IS Y R   G  AL+ F  M++  I P ++T S C+ +   I  ++HG
Sbjct: 287 MPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHG 346

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-DKRDLVSWNTIMMGLTQ 424
            Q H   I++ F  N +V SSL++MY+K G +++S  +F  + +K+D+V WNT++  L Q
Sbjct: 347 KQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQ 406

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           NG   + + +F +++E GL PDRIT   +L AC++ G V +G+  F AM  ++GV P +E
Sbjct: 407 NGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQE 466

Query: 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544
           HY+C+IDLL +AG   + ++    M  +P   +W ++L    I+ +++L   VAER+++L
Sbjct: 467 HYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL 526

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +  S   Y  L   YA  G+WE++ +V+++M +  I K  G SWI + N+ ++F A +  
Sbjct: 527 KPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRL 586

Query: 605 HHGGQKIYLVLRLLTWEMEDE 625
           H   ++IYL+L  L    E++
Sbjct: 587 HPLKEEIYLLLEQLARHTEED 607



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 202/413 (48%), Gaps = 39/413 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFN-AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           L+  C   K F   K +H HL   GF    T + N  + +Y   G   +  ++FD++  +
Sbjct: 68  LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVR 127

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  SWN  L G  K  +++ A K+FD + E DVVSWN+++  YA  G  + A+ ++   +
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187

Query: 140 LQGVRPSGFTFS---ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
              +  + F+F+   IL   +      KQ+HG ++ +G  LSN+VL +S++D Y K G +
Sbjct: 188 RLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGF-LSNLVLSSSIVDAYAKCGEM 246

Query: 197 ------------------------YYAFG-------VFLNMEELDIISWNSLISGCFNSG 225
                                   Y  +G       +F  M E + +SW++LISG   + 
Sbjct: 247 RCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNS 306

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
            G  ALD F  M   G +P++YT S  + AC  +  L  GKQV    ++  F  N+IV+S
Sbjct: 307 LGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVS 366

Query: 286 ATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344
           + ID++SKC  LE S  +F  + ++ D  V N MIS   + G GE A+++F  M+   ++
Sbjct: 367 SLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLK 426

Query: 345 PTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTG 395
           P   T   +LS+      V+ G + F +M    G   +    S L+++  + G
Sbjct: 427 PDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAG 479


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 184/611 (30%), Positives = 299/611 (48%), Gaps = 46/611 (7%)

Query: 25   CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
            C   ++  F + IH  + K+G +   Y+    L +YS+ G   +   +F      +C+  
Sbjct: 781  CSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVF------SCV-- 832

Query: 85   NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                        +D  L++           WN+M++ Y        ALE+F  M+ + V 
Sbjct: 833  ------------VDKRLEI-----------WNAMVAAYVENDNGYSALELFGFMRQKSVL 869

Query: 145  PSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            P  FT    LS V S C       +GK +H  + +  +  S   + ++L+ +Y K G   
Sbjct: 870  PDSFT----LSNVISCCSMFGLYDYGKSVHAELFKRPIQ-STPAIESALLTLYSKCGCDT 924

Query: 198  YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS--PDEYTISIVINA 255
             A+ VF +MEE D+++W SLISG   +G  + AL  F  M+    S  PD   ++ VINA
Sbjct: 925  DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINA 984

Query: 256  CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            C  L  L  G QV    +K G + N  V S+ IDL+SKC   E ++++F  +   +    
Sbjct: 985  CAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAW 1044

Query: 316  NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
            N MIS Y R    E+++ELF LML + I P   +++ VL +I     +  G   H   ++
Sbjct: 1045 NSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 1104

Query: 375  SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
             G  S+  + ++L++MY K G    +  IF K+  + L++WN ++ G   +G     L +
Sbjct: 1105 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSL 1164

Query: 435  FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
            F+EL + G  PD +T  +++ ACN+ GFV++G   F  MK++YG+ P  EHYA ++DLL 
Sbjct: 1165 FDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLG 1224

Query: 495  QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
            +AG+L +A      MP +   SIW  +L AS  + +V+L    AE+++ ++      Y  
Sbjct: 1225 RAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQ 1284

Query: 555  LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
            L   Y   G      ++   M++ G+ K  GCSWI + +    F +G        +I+ V
Sbjct: 1285 LINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSDISNVFFSGGSSSPIKAEIFKV 1344

Query: 615  LRLLTWEMEDE 625
            L  L   M  E
Sbjct: 1345 LNRLKSNMVTE 1355



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 238/501 (47%), Gaps = 43/501 (8%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            L+  C S  +    KTIHG +  LG+    ++    +++Y + G  D  +Q+FD   Q  
Sbjct: 567  LLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSG 626

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                      +   DV   NSMI GY         +  F +M +
Sbjct: 627  --------------------------VSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLV 660

Query: 141  QGVRPSGFTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             GVRP  F+ SI++S +    +     GKQIHG M+R+ L   +  L  +LIDMY K G+
Sbjct: 661  LGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLD-GDSFLKTALIDMYFKFGL 719

Query: 196  LYYAFGVFLNMEEL-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
               A+ VF+ +E+  +++ WN +I G   S   E +L+ +   + +       + +  + 
Sbjct: 720  STDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALG 779

Query: 255  ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
            AC++  N   G+Q+    VK+G  ++  V ++ + ++SKC  + ++  +F  +      +
Sbjct: 780  ACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEI 839

Query: 315  INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAI 373
             N M++ Y     G  ALELF  M ++ + P  FTLS V+S   +  + ++G   H+   
Sbjct: 840  WNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELF 899

Query: 374  KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
            K    S   + S+L+ +Y+K G    +  +F  ++++D+V+W +++ GL +NG+  E L 
Sbjct: 900  KRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALK 959

Query: 434  VFEELL--EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM---KEEYGVMPGEEHYAC 488
            VF ++   ++ L PD   + +V+ AC     +  G+ V  +M    +   V  G    + 
Sbjct: 960  VFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVG----SS 1015

Query: 489  IIDLLCQAGQLGKAIDITSTM 509
            +IDL  + G    A+ + ++M
Sbjct: 1016 LIDLYSKCGLPEMALKVFTSM 1036



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 215/439 (48%), Gaps = 37/439 (8%)

Query: 34   AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
             K IHG++ +   +  ++L    +D+Y +FG S D  ++F EI  K+             
Sbjct: 688  GKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKS------------- 734

Query: 94   SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                             +VV WN MI G+      + +LE++   +   V+    +F+  
Sbjct: 735  -----------------NVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGA 777

Query: 154  LSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
            L   S   ++  G+QIH  +++ GL  ++  +  SL+ MY K G++  A  VF  + +  
Sbjct: 778  LGACSQSENSAFGRQIHCDVVKMGLD-NDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKR 836

Query: 211  IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
            +  WN++++    +  G  AL+ F  MR     PD +T+S VI+ C+     D GK V A
Sbjct: 837  LEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHA 896

Query: 271  LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
               K    S   + SA + L+SKC    D+  +F+ ++  D      +IS   + G  + 
Sbjct: 897  ELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKE 956

Query: 331  ALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
            AL++F  M  +D  ++P    ++ V+++   +  +  G Q H   IK+G   N  V SSL
Sbjct: 957  ALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSL 1016

Query: 388  MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
            +++Y+K G  + + ++F  +   ++V+WN+++   ++N     ++++F  +L +G+ PD 
Sbjct: 1017 IDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDS 1076

Query: 448  ITLAAVLLACNYGGFVDKG 466
            +++ +VL+A +    + KG
Sbjct: 1077 VSITSVLVAISSTASLLKG 1095



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 188/391 (48%), Gaps = 43/391 (10%)

Query: 19   SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
            S +I  C  F  +D+ K++H  LFK    +   + +  L LYS+ G   D   +F  + +
Sbjct: 876  SNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEE 935

Query: 79   KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            K+ ++W   + GL K+     ALKVF ++ + D                           
Sbjct: 936  KDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD--------------------------- 968

Query: 139  QLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
                ++P     S ++++V +AC        G Q+HGSMI++G  L NV +G+SLID+Y 
Sbjct: 969  --DSLKPD----SDIMTSVINACAGLEALSFGLQVHGSMIKTGQVL-NVFVGSSLIDLYS 1021

Query: 192  KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
            K G+   A  VF +M   +I++WNS+IS    +   EL+++ F  M   G  PD  +I+ 
Sbjct: 1022 KCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITS 1081

Query: 252  VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            V+ A +   +L KGK +   ++++G  S++ + +A ID++ KC   + +  +F+++    
Sbjct: 1082 VLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKS 1141

Query: 312  YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
                N+MI  YG +G    AL LF  + +    P + T   ++S+      VE G  F  
Sbjct: 1142 LITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFE 1201

Query: 371  -MAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
             M    G +      ++++++  + G ++ +
Sbjct: 1202 IMKQDYGIEPKMEHYANMVDLLGRAGRLEEA 1232



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 137/532 (25%), Positives = 224/532 (42%), Gaps = 67/532 (12%)

Query: 114  SWNSMISGYASCGYSDYALEMFSKMQLQGVRP---SGFTFSILLSTVSSACH---GKQIH 167
            S NS I      G    AL +++K    G  P   S FTF  LL   SS  +   GK IH
Sbjct: 527  SVNSGIRALIQKGEYLQALHLYTKHD--GSSPLWTSVFTFPSLLKACSSLTNLSSGKTIH 584

Query: 168  GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF-----LNMEELDIISWNSLISGCF 222
            GS+I  G    +  +  SL++MY K G L YA  VF       +   D+   NS+I G F
Sbjct: 585  GSIIVLGWRY-DPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYF 643

Query: 223  NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK--GKQVFALSVKVGFLSN 280
                 +  +  F  M   G  PD +++SIV++   K  N  +  GKQ+    ++     +
Sbjct: 644  KFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGD 703

Query: 281  SIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLML 339
            S + +A ID++ K     D+ R+F ++ D+ +  + NVMI  +G     E +LEL+ L  
Sbjct: 704  SFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAK 763

Query: 340  REDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
               ++    + +  L +         G Q H   +K G D++  V++SL+ MY+K G + 
Sbjct: 764  SNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVG 823

Query: 399  SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
             +  +F  +  + L  WN ++    +N      L++F  + ++ + PD  TL+ V+  C+
Sbjct: 824  EAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCS 883

Query: 459  YGGFVDKGM-----------------------------------LVFSAMKEEYGVMPGE 483
              G  D G                                    LVF +M+E+  V  G 
Sbjct: 884  MFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGS 943

Query: 484  EHYACIIDLLCQAGQLGKAIDITSTMP-----FQPGCSIWESILRASAIYGDVKLTENVA 538
                 +I  LC+ G+  +A+ +   M       +P   I  S++ A A    +     V 
Sbjct: 944  -----LISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVH 998

Query: 539  ERMMDL-QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI---NKVTGC 586
              M+   Q+ +    S L   Y+  G  E  ++V   MR   I   N +  C
Sbjct: 999  GSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISC 1050


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 168/594 (28%), Positives = 299/594 (50%), Gaps = 37/594 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           IHG + K    A  Y+ N  + +Y++ G  +D                            
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYAKCGRMED---------------------------- 301

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
              A +VF+ +   D VSWN+++SG         AL  F  MQ  G +P   +   L++ 
Sbjct: 302 ---AGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAA 358

Query: 157 VSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              + +   GK++H   IR+GL  SN+ +GN+L+DMY K   + Y    F  M E D+IS
Sbjct: 359 SGRSGNLLKGKEVHAYAIRNGLD-SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLIS 417

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W ++I+G   + +   A++ F  ++  G   D   I  V+ AC+ L++ +  +++     
Sbjct: 418 WTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVF 477

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           K   L++ ++ +A ++++ +   ++ + R FE +   D      MI+     G    ALE
Sbjct: 478 KRD-LADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           LF  + + +I+P    +   LS+   +  ++ G + H   I+ GF     +ASSL++MYA
Sbjct: 537 LFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYA 596

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
             G++++S ++F  + +RDL+ W +++     +G   + + +F+++ ++ + PD IT  A
Sbjct: 597 CCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLA 656

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           +L AC++ G + +G   F  MK  Y + P  EHYAC++DLL ++  L +A      MP +
Sbjct: 657 LLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIK 716

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P   IW ++L A  I+ + +L E  A+ ++     +   Y+L++  +A  GRW  +  V+
Sbjct: 717 PSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVR 776

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
             M+ NG+ K  GCSWI + N+I+TF A +  H     IYL L   T  +E +G
Sbjct: 777 LRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKG 830



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 213/446 (47%), Gaps = 40/446 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+D C++ K+    + +H  L K   +A  +L  + + +Y + G+  D          
Sbjct: 50  SLLLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRD---------- 97

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                                A+KVFDE+ E  + SWN+++  + S G    A+E++  M
Sbjct: 98  ---------------------AVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDM 136

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           ++ GV     TF  +L    +      G +IHG  ++ G     V + N+LI MYGK G 
Sbjct: 137 RVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYG-EFVFVCNALIAMYGKCGD 195

Query: 196 LYYAFGVF--LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           L  A  +F  + ME+ D +SWNS+IS     G    AL  F  M+  G + + YT    +
Sbjct: 196 LGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAAL 255

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
                   +  G  +    +K    ++  V +A I +++KC R+ED+ R+FE +   DY 
Sbjct: 256 QGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYV 315

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMA 372
             N ++S   +      AL  F+ M     +P + + L+ + +S     +  G + H+ A
Sbjct: 316 SWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYA 375

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           I++G DSN  + ++L++MYAK   +      F  + ++DL+SW TI+ G  QN    E +
Sbjct: 376 IRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAI 435

Query: 433 DVFEELLEEGLPPDRITLAAVLLACN 458
           ++F ++  +G+  D + + +VL AC+
Sbjct: 436 NLFRKVQVKGMDVDPMMIGSVLRACS 461



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 230/513 (44%), Gaps = 37/513 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C +         IHG   K G+    ++ N  + +Y + G       LFD I    
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGI---- 206

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                     + + D VSWNS+IS + + G    AL +F +MQ 
Sbjct: 207 -------------------------MMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQE 241

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            GV  + +TF   L  V        G  IHG++++S    ++V + N+LI MY K G + 
Sbjct: 242 VGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSN-HFADVYVANALIAMYAKCGRME 300

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF +M   D +SWN+L+SG   +     AL+ F  M+ SG  PD+ ++  +I A  
Sbjct: 301 DAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASG 360

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
           +  NL KGK+V A +++ G  SN  + +  +D+++KC  ++     FE +   D      
Sbjct: 361 RSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTT 420

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           +I+ Y +  F   A+ LF+ +  + +      +  VL +   +       + H    K  
Sbjct: 421 IIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRD 480

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             ++ ++ ++++ +Y + G ID +   F  +  +D+VSW +++     NG   E L++F 
Sbjct: 481 L-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            L +  + PD I + + L A      + KG  +   +  +   + G    + ++D+    
Sbjct: 540 SLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI-ASSLVDMYACC 598

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           G +  +  +  ++  Q    +W S++ A+ ++G
Sbjct: 599 GTVENSRKMFHSVK-QRDLILWTSMINANGMHG 630



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 6/313 (1%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G+Q+H  +++S LS     L   L+ MYGK G L  A  VF  M E  I SWN+L+   
Sbjct: 64  QGQQLHALLLKSHLS---AFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAF 120

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            +SG    A++ +  MR  G + D  T   V+ AC  L     G ++  ++VK G+    
Sbjct: 121 VSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFV 180

Query: 282 IVLSATIDLFSKCNRLEDSVRLFE--QLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
            V +A I ++ KC  L  +  LF+   +++ D    N +IS +   G    AL LF+ M 
Sbjct: 181 FVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQ 240

Query: 340 REDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
              +    +T    L  +  P  V+ G   H   +KS   ++  VA++L+ MYAK G ++
Sbjct: 241 EVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRME 300

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F  +  RD VSWNT++ GL QN   ++ L+ F ++   G  PD++++  ++ A  
Sbjct: 301 DAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASG 360

Query: 459 YGGFVDKGMLVFS 471
             G + KG  V +
Sbjct: 361 RSGNLLKGKEVHA 373



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 125/288 (43%), Gaps = 39/288 (13%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   KS +F + IHG++FK    A   L N  +++Y   G  D   + F+ I  K     
Sbjct: 460 CSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSK----- 513

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                                     D+VSW SMI+     G    ALE+F  ++   ++
Sbjct: 514 --------------------------DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547

Query: 145 PSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P        LS    +SS   GK+IHG +IR G  L   +  +SL+DMY   G +  +  
Sbjct: 548 PDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI-ASSLVDMYACCGTVENSRK 606

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           +F ++++ D+I W S+I+     G G  A+  F  M      PD  T   ++ AC+    
Sbjct: 607 MFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGL 666

Query: 262 LDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDSVRLFEQL 307
           + +GK+ F + +K G+         +  +DL S+ N LE++      +
Sbjct: 667 MVEGKRFFEI-MKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNM 713



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 32/156 (20%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           LK+ ++   S++  S L     +  S    K IHG L + GF     + +  +D+Y+  G
Sbjct: 541 LKQTNIQPDSIAIISAL-SATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCG 599

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           T ++  ++F  + Q+                               D++ W SMI+    
Sbjct: 600 TVENSRKMFHSVKQR-------------------------------DLILWTSMINANGM 628

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
            G  + A+ +F KM  Q V P   TF  LL   S +
Sbjct: 629 HGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHS 664


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 267/479 (55%), Gaps = 3/479 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK  HG  I  GL +++ +  N LI++Y K G    A  VF  M    I+SWN++I+G  
Sbjct: 76  GKSCHGLAIHFGL-VTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYT 134

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           +SG    AL  F  M   G    E+T+S  I AC     +++ KQ+  +++K+   SNS 
Sbjct: 135 HSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSF 194

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D+++KCN ++D+  +FE++        + + + Y + G  E AL LF+   RE 
Sbjct: 195 VGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREG 254

Query: 343 IRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +  TEFTLS +LS+     ++  G Q H++ +K GF  N  VA+SL+++YA+ G I+ + 
Sbjct: 255 VELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAY 314

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  ++ +++V WN ++   +++  + E + +FE++ + G+ P+ +T  +VL  C++ G
Sbjct: 315 ALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAG 374

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            V+KG   FS +  +  V P   HY+C++D+L ++G+  +A ++ + MPF+P  S+W S+
Sbjct: 375 LVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSL 434

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +   Y +++L    AE++  L+  +   + LL+  YA  G WE ++  +K ++ +G  
Sbjct: 435 LGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAK 494

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED-EGCVYLECDKLDVEG 639
           K  G SWI  K +++ F  GE +H     IY  L  +  EM        +ECD  DV  
Sbjct: 495 KEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHA 553



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 204/445 (45%), Gaps = 46/445 (10%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N   +S  SQ +  C   KS    K+ HG     G    T   N  ++LY++ G +D   
Sbjct: 53  NLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRND--- 109

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                           C R             VFD +    +VSWN+MI+GY   G    
Sbjct: 110 ----------------CAR------------LVFDIMHVRSIVSWNTMIAGYTHSGEDVQ 141

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-------KQIHGSMIRSGLSLSNVVLG 183
           AL++FS+M  +G   S FT    LS+   AC         KQ+H   ++  L  SN  +G
Sbjct: 142 ALKLFSRMHREGTHMSEFT----LSSTICACAAKYAINECKQLHTIALKLALD-SNSFVG 196

Query: 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS 243
            +++D+Y K  ++  A  VF  M E  +++W+SL +G   +G  E AL  F   +  G  
Sbjct: 197 TAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVE 256

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
             E+T+S +++AC  L    +G Q+ A+ +K GF  N  V ++ +D++++C ++E +  L
Sbjct: 257 LTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYAL 316

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-V 362
           F  ++  +  + N MI+++ R+     A+ LF+ M +  I P E T   VLS       V
Sbjct: 317 FAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLV 376

Query: 363 EHGSQFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           E G  + S+ +     + N +  S ++++  ++G  D + E+  K+      S    ++G
Sbjct: 377 EKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLG 436

Query: 422 LTQNGRAAETLDVFEELLEEGLPPD 446
             +N        +  E L + L PD
Sbjct: 437 SCRNYNNIRLARIAAEQLFQ-LEPD 460



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D   IS  +  C K ++L  GK    L++  G +++++  +  I+L++KC R + +  +F
Sbjct: 56  DVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVF 115

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVE 363
           + +        N MI+ Y   G    AL+LF  M RE    +EFTLS  + +      + 
Sbjct: 116 DIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAIN 175

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
              Q H++A+K   DSN+ V ++++++YAK   I  +  +F K+ +R LV+W+++  G  
Sbjct: 176 ECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYV 235

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           QNG   E L +F     EG+     TL+A+L AC       +G+ + + +  + G     
Sbjct: 236 QNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVIL-KCGFHGNF 294

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
              A ++D+  + GQ+ KA  + + M       IW +++ + + +        + E+M  
Sbjct: 295 FVAASLVDVYARCGQIEKAYALFAYME-HKNVVIWNAMIASFSRHAHSWEAMILFEKMQQ 353

Query: 544 LQL-PSPLPY 552
           L + P+ + Y
Sbjct: 354 LGIFPNEVTY 363


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 170/564 (30%), Positives = 282/564 (50%), Gaps = 50/564 (8%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG---- 163
           P  +V  WNS+I      G    AL ++S+ Q   ++P  +TF     +V +AC G    
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFP----SVINACAGLLDF 131

Query: 164 ---KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
              K IH  ++  G   S++ +GN+LIDMY +   L  A  VF  M   D++SWNSLISG
Sbjct: 132 EMAKSIHDRVLDMGFG-SDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 221 CFNSGYGELALDQFYSM------RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
              +GY   AL+ +Y          + + PD  TI+ ++ AC  L +L+ GK V    + 
Sbjct: 191 YNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 250

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            G+  ++   +  I++++KC  L  S  +F  +   D    N MI+ Y + G    +L++
Sbjct: 251 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKV 310

Query: 335 FQLMLREDIRP-TEFTLSCVLSS------------------------IPIPPV------- 362
           F+ M   DI        SCV S                         + I PV       
Sbjct: 311 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 370

Query: 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
             G + H    K G +S+  V + L+EMY+K GS+ +S ++F  +  +D+V+W  ++   
Sbjct: 371 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 430

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
              G   + +  F E+   G+ PD +   A++ AC++ G V++G+  F  MK++Y + P 
Sbjct: 431 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 490

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
            EHYAC++DLL ++  L KA D   +MP +P  SIW ++L A  + GD ++ E V+ER++
Sbjct: 491 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII 550

Query: 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           +L       Y L++  YA  G+W+ +  ++K ++  G+ K  GCSW+ I+N++Y F  G 
Sbjct: 551 ELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGT 610

Query: 603 LQHHGGQKIYLVLRLLTWEMEDEG 626
                 +++  +L +L   M  EG
Sbjct: 611 KFFEQFEEVNKLLGMLAGLMAKEG 634



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 206/439 (46%), Gaps = 17/439 (3%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I+ C     F+ AK+IH  +  +GF +  Y+GN  +D+Y RF   D   ++F+E+P ++
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180

Query: 81  CISWNICLRGLLKSDNLDTAL-------KVFDEIP---EPDVVSWNSMISGYASCGYSDY 130
            +SWN  + G   +   + AL       K+F E+    +PD+++  S++      G  ++
Sbjct: 181 VVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEF 240

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
              +   M   G        +IL++  +    G  +    + SG+   + V  NS+I++Y
Sbjct: 241 GKYVHDYMITSGYECDTTASNILINMYAKC--GNLLASQEVFSGMKCKDSVSWNSMINVY 298

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            + G +  +  VF NM+  DII+WN++I+ C +S    L L     MR  G +PD  T+ 
Sbjct: 299 IQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATML 358

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            ++  C+ L    +GK++     K+G  S+  V +  I+++SKC  L +S ++F+ +   
Sbjct: 359 SILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK 418

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHG-SQF 368
           D      +IS  G YG G+ A+  F  M    I P       ++ +      VE G + F
Sbjct: 419 DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYF 478

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGR 427
           H M      +      + ++++ +++  +D + +  + +  K D   W  ++     +G 
Sbjct: 479 HRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGD 538

Query: 428 AAETLDVFEELLEEGLPPD 446
                 V E ++E  L PD
Sbjct: 539 TEIAERVSERIIE--LNPD 555



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 140/264 (53%), Gaps = 10/264 (3%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K  L   + ++  C      +F K +H ++   G+   T   N  +++Y++ G      +
Sbjct: 219 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 278

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD-- 129
           +F  +  K+ +SWN  +   +++  +  +LKVF+ +   D+++WN++I   ASC +S+  
Sbjct: 279 VFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTII---ASCVHSEDC 335

Query: 130 -YALEMFSKMQLQGVRPSGFT-FSIL--LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185
              L M S+M+ +GV P   T  SIL   S +++   GK+IHG + + GL  S+V +GN 
Sbjct: 336 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE-SDVPVGNV 394

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI+MY K G L  +F VF  M+  D+++W +LIS C   G G+ A+  F  M  +G  PD
Sbjct: 395 LIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPD 454

Query: 246 EYTISIVINACTKLRNLDKGKQVF 269
                 +I AC+    +++G   F
Sbjct: 455 HVAFVAIIFACSHSGLVEEGLNYF 478


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 174/574 (30%), Positives = 290/574 (50%), Gaps = 49/574 (8%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS--DNLDTALKVFDE-IPEP 110
           N+ +   +R G      ++FD +  ++ +SWN  L  L ++   +L  A ++FDE +P  
Sbjct: 19  NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSM 170
           DVVSWNS+I+G  + G  D A   F+    + V     T++ +L+ +     G+ +    
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPERNV----ATWNAMLAGLVRL--GRVVDAQR 132

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           +   +   NVV   +++D   + G +  A  VF +M + +++SW ++ISGC  +G    A
Sbjct: 133 LFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEA 192

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
            + F +M      P++  +     ACT                            A I  
Sbjct: 193 RELFEAM------PEKNVV-----ACT----------------------------AMITG 213

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
             K   ++ + RLF+ +   D    N MI+ Y   G GE A+ L  LM RE ++P   TL
Sbjct: 214 HCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATL 273

Query: 351 SCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
             VL++   +  +  G   H++AIK+  +S    +++LM MY+K G++  S  +F+ L  
Sbjct: 274 IAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRT 333

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           +D+VSWNTI+    Q+G+  + + +F E+   GL PD IT  +VL AC + G VD  + +
Sbjct: 334 KDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKL 393

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           F  M  +Y + P  EHYACI+D+L +AGQL KA      MP +   ++W S+L A  I+G
Sbjct: 394 FDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHG 453

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           +V+L E  A+ ++     S  PY +L+  YA  G W  + +++  M++ G+ K  G SW 
Sbjct: 454 NVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPGYSWT 513

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            I N ++ F  G+  H   +KI   LR +++ M 
Sbjct: 514 EIGNEVHMFVGGDASHPEMRKIISELRKISFHMR 547



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 16/296 (5%)

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL-AL 231
           + L+   ++  N  I    + G +  A  VF  M   D++SWN+L++  + +G   L A 
Sbjct: 8   ASLAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAA 67

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
            + +       S D  + + +I  C    +LD     FA + +    + + +L+  + L 
Sbjct: 68  RRLFDEAMP--SRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRL- 124

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
               R+ D+ RLF+++   +      M+    R G  E A E+F  M   ++      +S
Sbjct: 125 ---GRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMIS 181

Query: 352 -CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            CV + +    VE    F +M  K     N V  ++++  + K G +DS+  +F  +  +
Sbjct: 182 GCVENGM---FVEARELFEAMPEK-----NVVACTAMITGHCKQGDVDSARRLFDGIRAK 233

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           D++SWN ++ G   NG   E + +   +  EG+ PD  TL AVL AC+    + +G
Sbjct: 234 DVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQG 289



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +       K+ H    K    +     N  + +YS+ G   +   +F  +  K+ +SW
Sbjct: 280 CSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSW 339

Query: 85  NICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  +    +       + +F E+      PD +++ S++S     G  D +L++F  M  
Sbjct: 340 NTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSS 399

Query: 141 Q-GVRPSGFTFSILLSTVSSA 160
           +  + P    ++ ++  +S A
Sbjct: 400 KYAISPRAEHYACIVDILSRA 420


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 285/581 (49%), Gaps = 49/581 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C    SF      H H+ K G      +GN  L LY + G              
Sbjct: 65  ASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGP------------- 111

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +    +VFD     D +SW SM+SGY +      ALE+F +M
Sbjct: 112 -----------------GMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEM 154

Query: 139 QLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
              G+  + FT    LS+   AC        G+  HG +I  G    N  + ++L  +YG
Sbjct: 155 VSFGLDANEFT----LSSAVKACSELGEVRLGRCFHGVVITHGFEW-NHFISSTLAYLYG 209

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTIS 250
                  A  VF  M E D+I W +++S    +   E AL  FY+M R  G  PD  T  
Sbjct: 210 VNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFG 269

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+ AC  LR L +GK++    +  G  SN +V S+ +D++ KC  + ++ ++F  + + 
Sbjct: 270 TVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKK 329

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
           +    + ++  Y + G  E A+E+F+ M  +D+    +    VL +   +  V  G + H
Sbjct: 330 NSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL----YCFGTVLKACAGLAAVRLGKEIH 385

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
              ++ G   N +V S+L+++Y K+G IDS++ ++ K+  R++++WN ++  L QNGR  
Sbjct: 386 GQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGE 445

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E +  F +++++G+ PD I+  A+L AC + G VD+G   F  M + YG+ PG EHY+C+
Sbjct: 446 EAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCM 505

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV-KLTENVAERMMDLQLPS 548
           IDLL +AG   +A ++      +   S+W  +L   A   D  ++ E +A+RMM+L+   
Sbjct: 506 IDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKY 565

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
            + Y LL+  Y   GR    + ++K+M + G+ K  G SWI
Sbjct: 566 HMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWI 606


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 277/478 (57%), Gaps = 4/478 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H  MI +    + V LG  L+ MY + G L  A  V   M E  ++SW ++ISG  
Sbjct: 29  GRQVHARMITARYRPA-VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS 87

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     ALD F  M  +G  P+EYT++ V+ +C+  +++ +GKQV +L VK  F S+  
Sbjct: 88  QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D+++K   ++++ R+F+ L   D      +IS Y + G  E AL+LF+ +  E 
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++    T + +++++  +  +++G Q H++ ++        + +SL++MY+K G +  S 
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 267

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  + +R +VSWN ++MG  ++G   E + +F++L +E + PD +TL AVL  C++GG
Sbjct: 268 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGG 326

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VD+G+ +F  + +E   +    HY CIIDLL ++G+L KA+++   MPF+   SIW S+
Sbjct: 327 LVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSL 386

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ +V + E VA+++++++  +   Y +L+  YA  G W+ + +V+K+M +  + 
Sbjct: 387 LGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVT 446

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVY-LECDKLDVE 638
           K  G SWI +   I+TF++ E  H   + I   ++ +  +++  G V  L C   DV+
Sbjct: 447 KEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVD 504



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 36/337 (10%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C+  ++    + +H  +    +    +LG R + +Y R G  DD             
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDD------------- 63

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                             A  V D +PE  VVSW +MISGY+       AL++F KM   
Sbjct: 64  ------------------ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRA 105

Query: 142 GVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G  P+ +T + +L++ S   S   GKQ+H  ++++    S++ +G+SL+DMY K   +  
Sbjct: 106 GCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE-SHMFVGSSLLDMYAKSENIQE 164

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  + E D++S  ++ISG    G  E ALD F  +   G   +  T + ++ A + 
Sbjct: 165 ARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSG 224

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L +LD GKQV AL ++        + ++ ID++SKC +L  S R+F+ +        N M
Sbjct: 225 LASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAM 284

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           +  YGR+G G   + LF+  L ++++P   TL  VLS
Sbjct: 285 LMGYGRHGLGHEVISLFK-DLHKEVKPDSVTLLAVLS 320



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 37/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C   +S    K +H  L K  F +H ++G+  LD+Y+                 
Sbjct: 115 ATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA----------------- 157

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         KS+N+  A +VFD +PE DVVS  ++ISGYA  G  + AL++F ++
Sbjct: 158 --------------KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL 203

Query: 139 QLQGVRPSGFTFSIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++ +  TF+ L   LS ++S  +GKQ+H  ++R  L    V L NSLIDMY K G 
Sbjct: 204 YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFF-VALQNSLIDMYSKCGK 262

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L Y+  VF NM E  ++SWN+++ G    G G   +  F  + +    PD  T+  V++ 
Sbjct: 263 LLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSG 321

Query: 256 CTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    +D+G  +F   VK    L ++      IDL  +  RLE ++ L E +
Sbjct: 322 CSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 374



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 1/236 (0%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M   G S   +     I AC + R L +G+QV A  +   +     + +  + ++ +C  
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L+D+  + +++          MIS Y +      AL+LF  MLR    P E+TL+ VL+S
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 357 IPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              P  +  G Q HS+ +K+ F+S+  V SSL++MYAK+ +I  +  +F  L +RD+VS 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
             I+ G  Q G   E LD+F +L  EG+  + +T   ++ A +    +D G  V +
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHA 236


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 170/574 (29%), Positives = 287/574 (50%), Gaps = 40/574 (6%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
            KS      IHG + +  F    Y+ N  L +Y  FG                       
Sbjct: 130 LKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFG----------------------- 166

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                    ++ A  VFD +   DV+SWN+MISGY   GY + AL MF  M  +GV P  
Sbjct: 167 --------RVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDH 218

Query: 148 FTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            T   +L     +     G+ +H  +    L    + + N+L++MY K G +  A  VF 
Sbjct: 219 ATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLG-DKIEVKNALVNMYLKCGRMDEARFVFG 277

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  D+I+W  +I+G    G  E AL+    M++ G  P+  TI+ +++AC     L+ 
Sbjct: 278 RMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLND 337

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           GK +   +++    S+ I+ ++ I +++KC  ++   R+F    R      + +I+   +
Sbjct: 338 GKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQ 397

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVV 383
                 AL+LF+ M RED+ P   TL+ +L +   +  +      H    K+GF S+   
Sbjct: 398 NELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDA 457

Query: 384 ASSLMEMYAKTGSIDSSTEIF----VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439
           A+ L+ +Y+K G+++S+ +IF     K   +D+V W  ++ G   +G     L VF E++
Sbjct: 458 ATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMV 517

Query: 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499
             G+ P+ IT  + L AC++ G V++G+ +FS M E Y  +    HY CI+DLL +AG+L
Sbjct: 518 RSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRL 577

Query: 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559
            +A ++ +T+PF+P  +IW ++L A   + +V+L E  A ++ +L+  +   Y LL   Y
Sbjct: 578 DEAYNLITTIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIY 637

Query: 560 AMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN 593
           A  GRW+ + +V+ +M   G+ K  G S I I++
Sbjct: 638 AALGRWKDMEKVRNMMENVGLRKKPGHSTIEIRS 671



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 219/442 (49%), Gaps = 15/442 (3%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR--PSGFTFSILLST- 156
           A K+FDE+P+  ++S+N +I  Y   G    A+ +F +M  +G++  P G+T+  +    
Sbjct: 68  ARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAA 127

Query: 157 --VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
             + S   G  IHG ++RS   +   V  N+L+ MY   G +  A  VF  M+  D+ISW
Sbjct: 128 GELKSISLGLVIHGRILRSWFGMDKYV-QNALLAMYMNFGRVEMARNVFDVMKNRDVISW 186

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N++ISG + +GY   AL  F  M   G  PD  TI  ++  C  L+ L+ G+ V  L V+
Sbjct: 187 NTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKL-VE 245

Query: 275 VGFLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
              L + I V +A ++++ KC R++++  +F +++R D      MI+ Y   G  E ALE
Sbjct: 246 EKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALE 305

Query: 334 LFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           L +LM  E +RP   T++ ++S+      +  G   H  AI+    S+ ++ +SL+ MYA
Sbjct: 306 LCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYA 365

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K   ID    +F    +     W+ I+ G  QN    + LD+F+ +  E + P+  TL +
Sbjct: 366 KCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNS 425

Query: 453 VLLACNYGGFVD-KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +L A  Y    D +  +       + G M   +    ++ +  + G L  A  I + +  
Sbjct: 426 LLPA--YATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQE 483

Query: 512 QPGCS---IWESILRASAIYGD 530
           +       +W +++    ++GD
Sbjct: 484 KHKSKDVVLWGALISGYGMHGD 505



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 145/300 (48%), Gaps = 11/300 (3%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           K +H  +I  G    +++  ++L   Y   G + YA  +F  M +  ++S+N +I     
Sbjct: 35  KALHCHVITGGRVSGHIL--STLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVR 92

Query: 224 SGYGELALDQFYSMRYSGYS--PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
            G    A++ F  M   G    PD YT   V  A  +L+++  G  +    ++  F  + 
Sbjct: 93  DGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDK 152

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V +A + ++    R+E +  +F+ +   D    N MIS Y R G+   AL +F  M+ E
Sbjct: 153 YVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNE 212

Query: 342 DIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
            + P   T   ++S +P+      +E G   H +  +        V ++L+ MY K G +
Sbjct: 213 GVDPDHAT---IVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D +  +F ++++RD+++W  ++ G  ++G     L++   +  EG+ P+ +T+A+++ AC
Sbjct: 270 DEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSAC 329



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++N     +++ K K +    +  G +S  I+ + ++  ++ C  +  + +LF+++ +  
Sbjct: 21  LLNHYAATQSISKTKALHCHVITGGRVSGHILSTLSVT-YALCGHIAYARKLFDEMPQSS 79

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIR--PTEFTLSCVLSSI-PIPPVEHGSQF 368
               N++I  Y R G    A+ +F  M+ E I+  P  +T   V  +   +  +  G   
Sbjct: 80  LLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVI 139

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H   ++S F  +  V ++L+ MY   G ++ +  +F  +  RD++SWNT++ G  +NG  
Sbjct: 140 HGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYM 199

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488
            + L +F+ ++ EG+ PD  T+ ++L  C +   ++ G  V   + EE  +    E    
Sbjct: 200 NDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHK-LVEEKRLGDKIEVKNA 258

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE--RMMDLQL 546
           ++++  + G++ +A  +   M  +   + W  ++      GDV   EN  E  R+M  + 
Sbjct: 259 LVNMYLKCGRMDEARFVFGRMERRDVIT-WTCMINGYIEDGDV---ENALELCRLMQFEG 314

Query: 547 PSP 549
             P
Sbjct: 315 VRP 317


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 177/653 (27%), Positives = 309/653 (47%), Gaps = 72/653 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C   KS    + +HGH+  LGF  H  L  + +  YS F               
Sbjct: 104 SSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAF--------------- 148

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                 N+ +   + ++N +    +    P      WN +IS Y   G+   AL  + +M
Sbjct: 149 ------NLLVDAHVITENSN----ILHPFP------WNLLISSYVRNGFCQKALSAYKQM 192

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G+RP  FT+  +L           GK++H S+  S +  S +++ N+LI MYGK G 
Sbjct: 193 VKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWS-LIVHNALISMYGKCGK 251

Query: 196 LYYAFGVFLNMEELDIISWNSLIS-----------------------------------G 220
           +  A  +F  + E D +SWNS+IS                                   G
Sbjct: 252 VGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGG 311

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +G  + AL+    MR  G   D   + I + AC+ + +   GK++ + +++  F   
Sbjct: 312 YLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEV 371

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V +A I ++S+C  L+ +  LF+ ++       N +IS        E A  L + ML 
Sbjct: 372 DTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLL 431

Query: 341 EDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS-MAIKSGFDSNAVVASSLMEMYAKTGSID 398
             I P   T++ VL     +  ++HG +FH  M  +  F  + ++ ++L++MYA++G + 
Sbjct: 432 FGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVL 491

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F  L +RD +++ +++ G    G     L +FEE+    + PD IT+ AVL AC+
Sbjct: 492 EARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACS 551

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           + G V +G L+F  M+  YG+ P  EH+AC+ DL  +AG L KA +I   MP++P  ++W
Sbjct: 552 HSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMW 611

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            +++ A  I+ + ++ E  AE++++++  +P  Y L+   YA  G W  + +V+  MR  
Sbjct: 612 ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDL 671

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
           G+ K  GC+W+ +      F   +  +    +IY +L  LT  M++ G +  E
Sbjct: 672 GVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGYISSE 724


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 277/478 (57%), Gaps = 4/478 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H  MI +    + V LG  L+ MY + G L  A  V   M E  ++SW ++ISG  
Sbjct: 61  GRQVHARMITARYRPA-VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS 119

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     ALD F  M  +G  P+EYT++ V+ +C+  +++ +GKQV +L VK  F S+  
Sbjct: 120 QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 179

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D+++K   ++++ R+F+ L   D      +IS Y + G  E AL+LF+ +  E 
Sbjct: 180 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 239

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++    T + +++++  +  +++G Q H++ ++        + +SL++MY+K G +  S 
Sbjct: 240 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 299

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  + +R +VSWN ++MG  ++G   E + +F++L +E + PD +TL AVL  C++GG
Sbjct: 300 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGG 358

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VD+G+ +F  + +E   +    HY CIIDLL ++G+L KA+++   MPF+   SIW S+
Sbjct: 359 LVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSL 418

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ +V + E VA+++++++  +   Y +L+  YA  G W+ + +V+K+M +  + 
Sbjct: 419 LGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVT 478

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVY-LECDKLDVE 638
           K  G SWI +   I+TF++ E  H   + I   ++ +  +++  G V  L C   DV+
Sbjct: 479 KEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVD 536



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 36/337 (10%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C+  ++    + +H  +    +    +LG R + +Y R G  DD             
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDD------------- 95

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                             A  V D +PE  VVSW +MISGY+       AL++F KM   
Sbjct: 96  ------------------ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRA 137

Query: 142 GVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G  P+ +T + +L++ S   S   GKQ+H  ++++    S++ +G+SL+DMY K   +  
Sbjct: 138 GCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE-SHMFVGSSLLDMYAKSENIQE 196

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  + E D++S  ++ISG    G  E ALD F  +   G   +  T + ++ A + 
Sbjct: 197 ARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSG 256

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L +LD GKQV AL ++        + ++ ID++SKC +L  S R+F+ +        N M
Sbjct: 257 LASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAM 316

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           +  YGR+G G   + LF+  L ++++P   TL  VLS
Sbjct: 317 LMGYGRHGLGHEVISLFK-DLHKEVKPDSVTLLAVLS 352



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 37/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C   +S    K +H  L K  F +H ++G+  LD+Y+                 
Sbjct: 147 ATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA----------------- 189

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         KS+N+  A +VFD +PE DVVS  ++ISGYA  G  + AL++F ++
Sbjct: 190 --------------KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL 235

Query: 139 QLQGVRPSGFTFSIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++ +  TF+ L   LS ++S  +GKQ+H  ++R  L    V L NSLIDMY K G 
Sbjct: 236 YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFF-VALQNSLIDMYSKCGK 294

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L Y+  VF NM E  ++SWN+++ G    G G   +  F  + +    PD  T+  V++ 
Sbjct: 295 LLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSG 353

Query: 256 CTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    +D+G  +F   VK    L ++      IDL  +  RLE ++ L E +
Sbjct: 354 CSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 406



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 1/236 (0%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M   G S   +     I AC + R L +G+QV A  +   +     + +  + ++ +C  
Sbjct: 33  MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 92

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L+D+  + +++          MIS Y +      AL+LF  MLR    P E+TL+ VL+S
Sbjct: 93  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 152

Query: 357 IPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              P  +  G Q HS+ +K+ F+S+  V SSL++MYAK+ +I  +  +F  L +RD+VS 
Sbjct: 153 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 212

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
             I+ G  Q G   E LD+F +L  EG+  + +T   ++ A +    +D G  V +
Sbjct: 213 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHA 268


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 265/467 (56%), Gaps = 3/467 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ IH + I+S     ++VL N +++MY K G L  A  +F  M   D++SW  LISG  
Sbjct: 124 GRAIH-AHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYS 182

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            SG    AL  F  M + G+ P+E+T+S ++ A     +   G+Q+ A S+K G+  N  
Sbjct: 183 QSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVH 242

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D++++   + ++  +F  L   +    N +I+ + R G GE  + LF  MLR+ 
Sbjct: 243 VGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQG 302

Query: 343 IRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
             PT FT S V ++      +E G   H+  IKSG    A + ++L++MYAK+GSI  + 
Sbjct: 303 FEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAK 362

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           ++F +L K+D+VSWN+I+ G  Q+G  AE L +FE++L+  + P+ IT  +VL AC++ G
Sbjct: 363 KVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSG 422

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   F  MK ++ +     H+  ++DLL +AG+L +A      MP +P  ++W ++
Sbjct: 423 LLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGAL 481

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +  ++ ++ L    AE++ +L      P+ LL+  YA  GR     +V+K+M+++G+ 
Sbjct: 482 LGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVK 541

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           K   CSW+ I+N ++ F A +  H   ++I  +   ++ ++++ G V
Sbjct: 542 KEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYV 588



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 200/406 (49%), Gaps = 37/406 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S+++++C   +     + IH H+    F     L N  L++Y++ G+             
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS------------- 155

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             L+ A  +FD++P  D+VSW  +ISGY+  G +  AL +F KM
Sbjct: 156 ------------------LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKM 197

Query: 139 QLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
              G +P+ FT S LL    T  S  HG+Q+H   ++ G  + NV +G+SL+DMY +   
Sbjct: 198 LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM-NVHVGSSLLDMYARWAH 256

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  +F ++   +++SWN+LI+G    G GE  +  F  M   G+ P  +T S V  A
Sbjct: 257 MREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTA 316

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C    +L++GK V A  +K G    + + +  ID+++K   ++D+ ++F +L + D    
Sbjct: 317 CASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSW 376

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N +IS Y ++G G  AL+LF+ ML+  ++P E T   VL++      ++ G  +  +  K
Sbjct: 377 NSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK 436

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIM 419
              ++      +++++  + G ++ + +   ++  K     W  ++
Sbjct: 437 HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 149/287 (51%), Gaps = 3/287 (1%)

Query: 244 PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           P+    S ++N CT LR L +G+ + A      F  + ++L+  +++++KC  LE++  L
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDL 162

Query: 304 FEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE 363
           F+++   D     V+IS Y + G    AL LF  ML    +P EFTLS +L +    P +
Sbjct: 163 FDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD 222

Query: 364 -HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL 422
            HG Q H+ ++K G+D N  V SSL++MYA+   +  +  IF  L  +++VSWN ++ G 
Sbjct: 223 HHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGH 282

Query: 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482
            + G     + +F ++L +G  P   T ++V  AC   G +++G  V + + +  G  P 
Sbjct: 283 ARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKS-GGQPI 341

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                 +ID+  ++G +  A  +   +  Q   S W SI+   A +G
Sbjct: 342 AYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVS-WNSIISGYAQHG 387



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 3/206 (1%)

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           ++ G   H+    S F+ + V+ + ++ MYAK GS++ + ++F K+  +D+VSW  ++ G
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481
            +Q+G+A+E L +F ++L  G  P+  TL+++L A   G     G  +  A   +YG   
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL-HAFSLKYGYDM 239

Query: 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
                + ++D+  +   + +A  I +++  +   S W +++   A  G+ +    +  +M
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS-WNALIAGHARKGEGEHVMRLFLQM 298

Query: 542 MDLQL-PSPLPYSLLTQAYAMRGRWE 566
           +     P+   YS +  A A  G  E
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLE 324


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 250/451 (55%), Gaps = 1/451 (0%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           + V  N+++  + + G L     VF  M E ++I+W ++ISG   +   E +L  F  MR
Sbjct: 22  DTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMR 81

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
                P+  T    + AC+ L+ L+KG+Q+  L  K+G  SN  + SA +DL+SKC  LE
Sbjct: 82  CGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLE 141

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
           D+ R+FE     D   + V++  + + GF E A+E F  M+          +S VL +  
Sbjct: 142 DARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACG 201

Query: 359 I-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
           +   +  G Q HS+ IK    SN  V + L+ MY+K G +  S ++F  L  R+ VSWN+
Sbjct: 202 VDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNS 261

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++    ++G     L ++EE+++EG  P  +T  ++L AC++ G VDKGM    +M + Y
Sbjct: 262 MIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVY 321

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537
           G+ P  EHYAC++D+L +AG L +A  +   +  +P   IW+++L A +I GD ++ +  
Sbjct: 322 GISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYA 381

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           AE+++ L+   P PY LL   Y+ +GRW+   R  K M++ G+ K TG SWI I+ ++++
Sbjct: 382 AEQLLLLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEIEKKVHS 441

Query: 598 FNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           F   + +H   + IY VL  L   M DEG V
Sbjct: 442 FVVEDKKHPQAEIIYGVLAELFRLMIDEGYV 472



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 220/407 (54%), Gaps = 17/407 (4%)

Query: 59  LYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSM 118
           +Y + G   D +++FD++P ++ +SWN  + G L++ +LDT  +VFDE+ E +V++W ++
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGL 175
           ISG +     + +L +F +M+   + P+  T+   L+  S   +   G+QIHG + + G+
Sbjct: 61  ISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGI 120

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
             SN+ + ++L+D+Y K G L  A  VF +  ELD +S   ++ G   +G+ E A++ F 
Sbjct: 121 Q-SNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFV 179

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M   G   D   +S V+ AC    +L  GKQ+ +L +K    SN  V +  I+++SKC 
Sbjct: 180 KMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCG 239

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVL 354
            L++S+++F  L   +    N MI+ + R+G G  AL L++ M++E   PT+ T LS + 
Sbjct: 240 ELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLH 299

Query: 355 SSIPIPPVEHGSQF-HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDL 412
           +   +  V+ G +F  SM    G    A   + +++M  + G ++ +  +  +L  K D+
Sbjct: 300 ACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDV 359

Query: 413 VSWNTIM-----MGLTQNGR-AAETLDVFEELLEEGLPPDRITLAAV 453
           + W  ++      G T+ G+ AAE L     LLE   P   + LA +
Sbjct: 360 LIWQALLGACSIRGDTEIGKYAAEQL----LLLEPKKPAPYVLLANI 402



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 157/350 (44%), Gaps = 55/350 (15%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L+Y S L   C   ++ +  + IHG ++KLG  ++  + +  +DLYS+ G+ +D      
Sbjct: 90  LTYLSSLT-ACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLED------ 142

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                                    A +VF+   E D VS   ++ G+   G+ + A+E 
Sbjct: 143 -------------------------ARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEF 177

Query: 135 FSKMQLQG--VRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNS 185
           F KM   G  V P+      ++S V  AC        GKQIH  +I+  L  SN  +GN 
Sbjct: 178 FVKMVNIGTEVDPN------MVSAVLGACGVDTSLGLGKQIHSLVIKRSLG-SNPFVGNG 230

Query: 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           LI+MY K G L  +  VF  +   + +SWNS+I+     G G  AL  +  M   G  P 
Sbjct: 231 LINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPT 290

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           + T   +++AC+ +  +DKG +      KV G    +   +  +D+  +   L ++  L 
Sbjct: 291 DLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLI 350

Query: 305 EQLD-RWDYAVINVMI---STYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           E+L  + D  +   ++   S  G    G+ A E  QL+L E  +P  + L
Sbjct: 351 ERLSIKPDVLIWQALLGACSIRGDTEIGKYAAE--QLLLLEPKKPAPYVL 398


>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 764

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 173/600 (28%), Positives = 304/600 (50%), Gaps = 42/600 (7%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K + S  + L+  C   +       +H  + KLG++ +  +    L +YS  G       
Sbjct: 109 KPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCG------- 161

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                   +L++A ++F+ +   D V+WN+MI G       +  
Sbjct: 162 ------------------------DLESARRIFECVNGGDAVAWNTMIVGIFRNDKIEDG 197

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACH-----GKQIHGSMIRSGLSLSNVVLGNSL 186
           L +F  M + GV P+ FT+S++L+  S         GK IH  MI S + L+++ + N+L
Sbjct: 198 LMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDI-LADLPVENAL 256

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPD 245
           +DMY   G +  AF VF  +   +++SWNS+ISGC  +G+GE A+  +  + R S   PD
Sbjct: 257 LDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGFGEQAILMYRRLLRISTPRPD 316

Query: 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           EYT S  I A  +      GK +     K+G+  +  V +  + ++ K    E + ++F 
Sbjct: 317 EYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNGEAESAQKVFG 376

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEH 364
            +   D  +   MI    R G  E A++LF  M RE  R   F+LS VL +   +  +  
Sbjct: 377 VITERDVVLWTEMIVGESRVGNSECAVQLFIEMYREKNRTDGFSLSSVLGACSDMAMLRQ 436

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G  FHS+AIK+GFD+   V+ +L++MY K G  +++  IF  +   DL  WN+++   +Q
Sbjct: 437 GQVFHSLAIKTGFDNVMSVSGALVDMYGKNGKYETAESIFSLVSNPDLKCWNSMLGAYSQ 496

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
           +G   +    FE++LE G  PD +T  ++L AC++ G   +G  +++ MKE+ G+  G +
Sbjct: 497 HGMVEKAQSFFEQILENGFTPDAVTYLSLLAACSHKGSTQEGKFLWNQMKEQ-GITAGFK 555

Query: 485 HYACIIDLLCQAGQLGKAID-ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           HY+C++ L+ +AG LG+A++ I  + P      +W ++L A     ++++    A++++ 
Sbjct: 556 HYSCMVSLVSKAGLLGEALELIKQSPPENNQAELWRTLLSACVNARNLQIGLYAADQILK 615

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI-KNRIYTFNAGE 602
           L       + LL+  YA+ GRW+ +  +++ +R     K  G SWI +  N  + F++G+
Sbjct: 616 LDPEDTATHILLSNLYAVNGRWKDVAEMRRKIRGLASAKDPGLSWIEVNNNNTHVFSSGD 675



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 153/312 (49%), Gaps = 10/312 (3%)

Query: 152 ILLSTVSSACHGKQIHGSMIRSGL--SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           + ++ +  AC   Q+H  ++ +G   +  +    N+LI MY + G L  A  +F  M E 
Sbjct: 18  VSITALKRAC---QLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPER 74

Query: 210 DIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
           +++S+N+L S    N  Y   A      M      P+  T + ++  CT L ++  G  +
Sbjct: 75  NVVSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGSLL 134

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            +  +K+G+  N +V ++ + ++S C  LE + R+FE ++  D    N MI    R    
Sbjct: 135 HSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRNDKI 194

Query: 329 EVALELFQLMLREDIRPTEFTLSCVL---SSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385
           E  L LF+ ML   + PT+FT S VL   S +       G   H+  I S   ++  V +
Sbjct: 195 EDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILADLPVEN 254

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP- 444
           +L++MY   G +  +  +F K+   +LVSWN+I+ G ++NG   + + ++  LL    P 
Sbjct: 255 ALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGFGEQAILMYRRLLRISTPR 314

Query: 445 PDRITLAAVLLA 456
           PD  T +A + A
Sbjct: 315 PDEYTFSAAIPA 326



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 143/312 (45%), Gaps = 21/312 (6%)

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNS---IVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           C  +  L +  Q+ A+ +  G  S S      +  I ++ +C  LE + +LF+++   + 
Sbjct: 17  CVSITALKRACQLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPERNV 76

Query: 313 AVINVMISTYGR-YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHS 370
              N + S Y R   +   A  L   M  E ++P   T + ++    +   V  GS  HS
Sbjct: 77  VSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGSLLHS 136

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
             IK G+  N VV +S++ MY+  G ++S+  IF  ++  D V+WNT+++G+ +N +  +
Sbjct: 137 QIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRNDKIED 196

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLAC--------NYGGFVDKGMLVFSAMKEEYGVMPG 482
            L +F  +L  G+ P + T + VL AC        + G  +   M+V   + +    +P 
Sbjct: 197 GLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILAD----LPV 252

Query: 483 EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542
           E     ++D+ C  G + +A  +   +   P    W SI+   +  G  +    +  R++
Sbjct: 253 EN---ALLDMYCSCGDMKEAFYVFGKI-HNPNLVSWNSIISGCSENGFGEQAILMYRRLL 308

Query: 543 DLQLPSPLPYSL 554
            +  P P  Y+ 
Sbjct: 309 RISTPRPDEYTF 320


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 179/632 (28%), Positives = 318/632 (50%), Gaps = 44/632 (6%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +++  V    ++Y + +++ C S +S      IHG + + GF    ++G   +++Y++ G
Sbjct: 97  MQEEDVMPTKVTYVA-ILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCG 155

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
           +                      +RG   S         F  +   DVVSW +MI+  A 
Sbjct: 156 S----------------------VRGAWDS---------FKRLEHRDVVSWTAMIA--AC 182

Query: 125 CGYSDYALE--MFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSN 179
             +  +AL   ++ +MQL GV P+  T   + +      +   GK I+ S++ S +  S+
Sbjct: 183 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIY-SLVSSRVMESD 241

Query: 180 VVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF-NSGYGELALDQFYSMR 238
           V + NS ++M+G  G+L  A  +F +M + D+++WN +I+    N  +GE A+  F  ++
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGE-AVRLFGRLQ 300

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
             G   ++ T  +++N  T L +L KGK +  L  + G+  + +V +A + L+ +C    
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            + ++F  +   D     VM   Y + GF + AL+LFQ M  E  RPT  TL  VL +  
Sbjct: 361 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 420

Query: 359 -IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT 417
            +  ++ G Q HS  I++GF    VV ++L+ MY K G +  +  +F K+ KRD++ WN+
Sbjct: 421 HLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNS 480

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++    Q+G   ETL +F ++  +G   D ++  +VL A ++ G V  G   F AM +++
Sbjct: 481 MLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 540

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTEN 536
            + P  E Y C++DLL +AG++ +A+DI   +    P   +W ++L A   +      + 
Sbjct: 541 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 600

Query: 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIY 596
            AE++++        Y +L+  YA  G W+ + R++K+MR  G+ K  G S I I NR++
Sbjct: 601 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 660

Query: 597 TFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            F  G+  H     IY  L +L  EM   G +
Sbjct: 661 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI 692



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 251/523 (47%), Gaps = 40/523 (7%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K   ++   L+ RC S K+ D  + +H H+   GF  +  +    + +Y++ G+      
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGS------ 55

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
               +P+                     A +VF+ +   DV +W  MI  Y   G  D A
Sbjct: 56  ----VPE---------------------AQQVFEILERKDVFAWTRMIGIYCQQGDYDRA 90

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L MF +MQ + V P+  T+  +L+  +S      G +IHG +++ G    +V +G +LI+
Sbjct: 91  LGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFE-GDVFVGTALIN 149

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G +  A+  F  +E  D++SW ++I+ C       LA   +  M+  G  P++ T
Sbjct: 150 MYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKIT 209

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
           +  V NA      L +GK +++L       S+  V+++ +++F     L D+ RLFE + 
Sbjct: 210 LYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMV 269

Query: 309 RWDYAVINVMISTY-GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGS 366
             D    N++I+ Y     FGE A+ LF  + ++ I+  + T   +L+    +  +  G 
Sbjct: 270 DRDVVTWNIVITFYVQNENFGE-AVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGK 328

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H +  ++G+D + VVA++LM +Y +  +   + +IFV +  +D+++W  + +   QNG
Sbjct: 329 VIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNG 388

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              E L +F+E+  EG  P   TL AVL  C +   + KG  + S + E    M      
Sbjct: 389 FRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVET 448

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           A +I++  + G++ +A  +   M  +    +W S+L A A +G
Sbjct: 449 A-LINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHG 489



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 134/267 (50%), Gaps = 12/267 (4%)

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
           + PD      ++  C+  +N+D G++V       GF  N++V    I ++++C  + ++ 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
           ++FE L+R D      MI  Y + G  + AL +F  M  ED+ PT+ T   +L++     
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            ++ G + H   ++ GF+ +  V ++L+ MY K GS+  + + F +L+ RD+VSW  ++ 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-----AMKE 475
              Q+ + A    ++  +  +G+ P++ITL  V  A     ++ +G  ++S      M+ 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKA 502
           +  VM         +++   AG LG A
Sbjct: 241 DVRVMNSA------MNMFGNAGLLGDA 261



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 9/219 (4%)

Query: 346 TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405
           T F ++ +        V+HG + H      GF+ N +V   L++MYA+ GS+  + ++F 
Sbjct: 5   TAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFE 64

Query: 406 KLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
            L+++D+ +W  ++    Q G     L +F ++ EE + P ++T  A+L AC     +  
Sbjct: 65  ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKD 124

Query: 466 GMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           GM +   + +   E  V  G      +I++  + G +  A D    +  +   S W +++
Sbjct: 125 GMEIHGQILQQGFEGDVFVG----TALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAMI 179

Query: 523 RASAIYGDVKLTENVAERM-MDLQLPSPLPYSLLTQAYA 560
            A   +    L   +  RM +D  +P+ +    +  AY 
Sbjct: 180 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYG 218


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 176/574 (30%), Positives = 287/574 (50%), Gaps = 49/574 (8%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS--DNLDTALKVFDE-IPEP 110
           N+ +   +R G      ++FD +P ++ +SWN  L  L ++   +L  A ++FDE +P  
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSM 170
           DVVSWNS+I+G  + G  D A   F+    + V       + LL  +  A    ++ G M
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLR-LGRADDADRLFGEM 137

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
            +      NVV   +++D   + G +  A  VF  M + +++SW ++ISG   +G    A
Sbjct: 138 PKR-----NVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEA 192

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290
              F +M      P++  +     ACT                            A I  
Sbjct: 193 TKLFEAM------PEKNVV-----ACT----------------------------AMITS 213

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           + K   +E + RLF+ +   D    N MI+ Y   G GE A+ L  +M RE ++P   TL
Sbjct: 214 YCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATL 273

Query: 351 SCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409
             VL++   +  +  G   H++AIK+  +S    +++LM MY+K G++  S  +F+ L  
Sbjct: 274 IAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRT 333

Query: 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469
           +D+VSWNTI+    Q+G+  + + +F E+   GL PD IT  +VL AC + G VD  + +
Sbjct: 334 KDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKL 393

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           F  M  +Y + P  EHYACI+D+L +AGQL KA      MP +   ++W S+L A  ++G
Sbjct: 394 FDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHG 453

Query: 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
           +V+L E  A+ ++     S  PY +L+  YA  G W  + +V+  M++ G+ K  G SW 
Sbjct: 454 NVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWT 513

Query: 590 GIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
            I N ++ F  G+  H   +KI   LR +++ M 
Sbjct: 514 EIANEVHMFVGGDASHPEMRKIISELRKISFHMR 547



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 150/324 (46%), Gaps = 40/324 (12%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K +++  + ++   L     D A  + G + K    ++T +    +D  +R G      +
Sbjct: 108 KRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTM----VDGLARRGEVARARE 163

Query: 72  LFDEIPQKNCISWNICLRGLL-------------------------------KSDNLDTA 100
           +FD +P +N +SW   + G +                               K  ++++A
Sbjct: 164 VFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESA 223

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
            ++FD I   DV+SWN+MI+GY   G+ + A+ + + M  +GV+P   T   +L+  S+ 
Sbjct: 224 RRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSAL 283

Query: 161 C---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSL 217
                GK  H   I++ L  S +   N+L+ MY K G +  +  VF+N+   DI+SWN++
Sbjct: 284 ALLRQGKSTHAIAIKAMLE-SGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTI 342

Query: 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL-SVKVG 276
           I+     G  +  +  F+ M  +G  PD+ T   V++AC  +  +D   ++F L S K  
Sbjct: 343 IAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYA 402

Query: 277 FLSNSIVLSATIDLFSKCNRLEDS 300
               +   +  +D+ S+  +LE +
Sbjct: 403 ISPRAEHYACIVDILSRAGQLEKA 426



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGEL-AL 231
           + L+   ++  N  I    + G +  A  VF  M   D++SWN+L++  + +G   L A 
Sbjct: 8   ASLAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAA 67

Query: 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
            + +       S D  + + +I  C    +LD     FA + K    + + +L+  + L 
Sbjct: 68  RRLFDEAMP--SRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRL- 124

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
               R +D+ RLF ++ + +      M+    R G    A E+F  M   ++      +S
Sbjct: 125 ---GRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMIS 181

Query: 352 CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
             + +     VE    F +M  K     N V  ++++  Y K G ++S+  +F  +  +D
Sbjct: 182 GYVENGMF--VEATKLFEAMPEK-----NVVACTAMITSYCKQGDVESARRLFDGIRAKD 234

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
           ++SWNT++ G   NG   E + +   +  EG+ PD  TL AVL AC+    + +G
Sbjct: 235 VISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQG 289


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 277/478 (57%), Gaps = 4/478 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+Q+H  MI +    + V LG  L+ MY + G L  A  V   M E  ++SW ++ISG  
Sbjct: 29  GRQVHARMITARYRPA-VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYS 87

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +     ALD F  M  +G  P+EYT++ V+ +C+  +++ +GKQV +L VK  F S+  
Sbjct: 88  QTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D+++K   ++++ R+F+ L   D      +IS Y + G  E AL+LF+ +  E 
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++    T + +++++  +  +++G Q H++ ++        + +SL++MY+K G +  S 
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 267

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  + +R +VSWN ++MG  ++G   E + +F++L +E + PD +TL AVL  C++GG
Sbjct: 268 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGG 326

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VD+G+ +F  + +E   +    HY CIIDLL ++G+L KA+++   MPF+   SIW S+
Sbjct: 327 LVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSL 386

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  ++ +V + E VA+++++++  +   Y +L+  YA  G W+ + +V+K+M +  + 
Sbjct: 387 LGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVT 446

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVY-LECDKLDVE 638
           K  G SWI +   I+TF++ E  H   + I   ++ +  +++  G V  L C   DV+
Sbjct: 447 KEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVD 504



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 36/337 (10%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C+  ++    + +H  +    +    +LG R + +Y R G  DD             
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDD------------- 63

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                             A  V D +PE  VVSW +MISGY+       AL++F KM   
Sbjct: 64  ------------------ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRA 105

Query: 142 GVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G  P+ +T + +L++ S   S   GKQ+H  ++++    S++ +G+SL+DMY K   +  
Sbjct: 106 GCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE-SHMFVGSSLLDMYAKSENIQE 164

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  VF  + E D++S  ++ISG    G  E ALD F  +   G   +  T + ++ A + 
Sbjct: 165 ARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSG 224

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
           L +LD GKQV AL ++        + ++ ID++SKC +L  S R+F+ +        N M
Sbjct: 225 LASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAM 284

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           +  YGR+G G   + LF+  L ++++P   TL  VLS
Sbjct: 285 LMGYGRHGLGHEVISLFK-DLHKEVKPDSVTLLAVLS 320



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 37/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C   +S    K +H  L K  F +H ++G+  LD+Y+                 
Sbjct: 115 ATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYA----------------- 157

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         KS+N+  A +VFD +PE DVVS  ++ISGYA  G  + AL++F ++
Sbjct: 158 --------------KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL 203

Query: 139 QLQGVRPSGFTFSIL---LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G++ +  TF+ L   LS ++S  +GKQ+H  ++R  L    V L NSLIDMY K G 
Sbjct: 204 YSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFF-VALQNSLIDMYSKCGK 262

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L Y+  VF NM E  ++SWN+++ G    G G   +  F  + +    PD  T+  V++ 
Sbjct: 263 LLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPDSVTLLAVLSG 321

Query: 256 CTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    +D+G  +F   VK    L ++      IDL  +  RLE ++ L E +
Sbjct: 322 CSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 374



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 134/265 (50%), Gaps = 4/265 (1%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M   G S   +     I AC + R L +G+QV A  +   +     + +  + ++ +C  
Sbjct: 1   MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGA 60

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L+D+  + +++          MIS Y +      AL+LF  MLR    P E+TL+ VL+S
Sbjct: 61  LDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 357 IPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              P  +  G Q HS+ +K+ F+S+  V SSL++MYAK+ +I  +  +F  L +RD+VS 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMK 474
             I+ G  Q G   E LD+F +L  EG+  + +T   ++ A +    +D G  V +  ++
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQL 499
           +E       ++   +ID+  + G+L
Sbjct: 241 KELPFFVALQN--SLIDMYSKCGKL 263


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 185/606 (30%), Positives = 306/606 (50%), Gaps = 44/606 (7%)

Query: 34  AKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL 92
            + +HGH+   G  +    +GN  +++Y++ G+  D                        
Sbjct: 52  GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIAD------------------------ 87

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
                  A +VF  + E D VSWNSMI+G    G    A+E +  M+   + P  FT   
Sbjct: 88  -------ARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLIS 140

Query: 153 LLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            LS+ +S   A  G+QIHG  ++ G+ L NV + N+L+ +Y + G L     +F +M E 
Sbjct: 141 SLSSCASLKWAKLGQQIHGESLKLGIDL-NVSVSNALMTLYAETGYLNECRKIFSSMPEH 199

Query: 210 DIISWNSLISGCFNSGYGEL--ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           D +SWNS+I G   S    L  A+  F +   +G   +  T S V++A + L   + GKQ
Sbjct: 200 DQVSWNSII-GALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQ 258

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-DRWDYAVINVMISTYGRYG 326
           +  L++K      +   +A I  + KC  ++   ++F ++ +R D    N MIS Y    
Sbjct: 259 IHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNE 318

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVAS 385
               AL+L   ML+   R   F  + VLS+   +  +E G + H+ ++++  +S+ VV S
Sbjct: 319 LLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGS 378

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LP 444
           +L++MY+K G +D +   F  +  R+  SWN+++ G  ++G+  E L +F  +  +G  P
Sbjct: 379 ALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTP 438

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
           PD +T   VL AC++ G +++G   F +M + YG+ P  EH++C+ DLL +AG+L K  D
Sbjct: 439 PDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLED 498

Query: 505 ITSTMPFQPGCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562
               MP +P   IW ++L A   A     +L +  AE +  L+  + + Y LL   YA  
Sbjct: 499 FIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAG 558

Query: 563 GRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
           GRWE +V+ +K M+   + K  G SW+ +K+ ++ F AG+  H     IY  L+ L  +M
Sbjct: 559 GRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKM 618

Query: 623 EDEGCV 628
            D G V
Sbjct: 619 RDAGYV 624



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 148/358 (41%), Gaps = 81/358 (22%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +  C S K     + IHG   KLG + +  + N  + LY+  G  ++  ++F  +P+ + 
Sbjct: 142 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 201

Query: 82  ISWNICLRGLLKSDN--------LDTALKV--------------------FDEIPEP--- 110
           +SWN  +  L  S+            AL+                     F E+ +    
Sbjct: 202 VSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 261

Query: 111 ---------DVVSWNSMISGYASCGYSDYALEMFSKMQ---------------------- 139
                    +  + N++I+ Y  CG  D   ++FS+M                       
Sbjct: 262 LALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLA 321

Query: 140 ---------LQ-GVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSL 186
                    LQ G R   F ++ +LS  +S      G ++H   +R+ L  S+VV+G++L
Sbjct: 322 KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE-SDVVVGSAL 380

Query: 187 IDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PD 245
           +DMY K G L YA   F  M   +  SWNS+ISG    G GE AL  F +M+  G + PD
Sbjct: 381 VDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPD 440

Query: 246 EYTISIVINACTKLRNLDKG-KQVFALSVKVGFLSNSIVLSATIDLFSKC---NRLED 299
             T   V++AC+    L++G K   ++S   G        S   DL  +    ++LED
Sbjct: 441 HVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLED 498


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 188/628 (29%), Positives = 323/628 (51%), Gaps = 29/628 (4%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + ++H+ K S S  S ++  C   +     K IH  + K G  +   +G+  L  Y+   
Sbjct: 129 MHRSHM-KLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCF 187

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              +  ++FD + ++N + W++ L G +  + +D AL VF ++P  DVV+W ++ISG++ 
Sbjct: 188 EIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSK 247

Query: 125 CGYS-DYALEMFSKMQLQG-VRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGL 175
            G     ALEMF  M   G   P+ FTF      V  AC        G+ +HG +++ GL
Sbjct: 248 NGDGCGKALEMFRLMMRSGETTPNEFTFD----CVVRACGRLGILSVGRTVHGLLMKCGL 303

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
              +  +G +L++ Y +   +  A  V   +    + + NSLI G  + G  E A   F 
Sbjct: 304 EY-DPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFN 362

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKC 294
            M  +  +P  Y  +++I        +D  K++F  +  +  F SN++     I ++S+ 
Sbjct: 363 GM--TEMNPVSY--NLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTM-----ISVYSRN 413

Query: 295 NRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
             ++ ++ LFE+  +  D    N MIS Y   G  E AL+L+  M R  I+ T  T S +
Sbjct: 414 GEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSAL 473

Query: 354 LSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
             +   +  ++ G   H+  IK+ F+SN  V +SL++MY+K GSI  +   FV +   ++
Sbjct: 474 FHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNV 533

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
            +W  ++ G   +G  +E + +F+ ++E+GL P+  T   VL AC+  G V++GM +F +
Sbjct: 534 AAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHS 593

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M+  Y V P  EHYAC++DLL ++G + +A +    MP +    +W ++L A   + D++
Sbjct: 594 MERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLE 653

Query: 533 LTENVAERMMDLQLPSPL-PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
           + E VAE+M     P P+  Y +L+  YA  GRW   + V+K++R   + K  GCSWI +
Sbjct: 654 VGERVAEKMFSFD-PKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIEL 712

Query: 592 KNRIYTFNAGELQHHGGQKIYLVLRLLT 619
            N+I+ F+  +  H     IY  L  LT
Sbjct: 713 NNKIHVFSIEDRSHPYCNMIYATLEHLT 740



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 226/487 (46%), Gaps = 51/487 (10%)

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           IS NI +    K   LD A ++FD++P+  VVSWN+MIS Y+  G    AL +   M   
Sbjct: 73  ISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRS 132

Query: 142 GVRPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSG------------------------ 174
            ++ S  TFS +LS  +   C   GK IH  +++SG                        
Sbjct: 133 HMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEA 192

Query: 175 ------LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG- 227
                 L   N VL + ++  Y    V+  A  VF+ M   D+++W +LISG   +G G 
Sbjct: 193 RRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGC 252

Query: 228 ELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
             AL+ F  M  SG  +P+E+T   V+ AC +L  L  G+ V  L +K G   +  +  A
Sbjct: 253 GKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGA 312

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            ++ + +C  ++D++R+ + +       +N +I      G  E A  +F  M   ++ P 
Sbjct: 313 LVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM--TEMNPV 370

Query: 347 EFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            + L     ++     +    F  M  ++ F SN +++     +Y++ G ID + E+F +
Sbjct: 371 SYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMIS-----VYSRNGEIDKALELFEE 425

Query: 407 L-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
             +++D V+WN+++ G   +G+  E L ++  +    +   R T +A+  AC+  G + +
Sbjct: 426 TKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQ 485

Query: 466 GMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           G L+ + + +   E  V  G      +ID+  + G + +A   +    F P  + W +++
Sbjct: 486 GQLLHAHLIKTPFESNVYVGTS----LIDMYSKCGSIMEA-QTSFVSIFSPNVAAWTALI 540

Query: 523 RASAIYG 529
              A +G
Sbjct: 541 NGHAYHG 547



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 47/383 (12%)

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
           +LS ++  N  I  Y K   L  A  +F  M +  ++SWN++IS     G    AL   Y
Sbjct: 68  NLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVY 127

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK-- 293
           SM  S     E T S V++ C +LR L  GK +  L +K G  S  +V SA +  ++   
Sbjct: 128 SMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCF 187

Query: 294 -----------------------------CNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
                                        CN ++D++ +F ++ R D      +IS + +
Sbjct: 188 EIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSK 247

Query: 325 YGFG-EVALELFQLMLRE-DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNA 381
            G G   ALE+F+LM+R  +  P EFT  CV+ +   +  +  G   H + +K G + + 
Sbjct: 248 NGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDP 307

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            +  +L+E Y +  +ID +  +   +    L + N+++ GL   GR  +   VF  + E 
Sbjct: 308 SIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE- 366

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA--CIIDLLCQAGQL 499
            + P  ++   ++     GG +D    +F         MP    ++   +I +  + G++
Sbjct: 367 -MNP--VSYNLMIKGYAVGGQMDDSKRLFEK-------MPCRTIFSSNTMISVYSRNGEI 416

Query: 500 GKAIDITSTMPFQPGCSIWESIL 522
            KA+++      +     W S++
Sbjct: 417 DKALELFEETKNEKDPVTWNSMI 439


>gi|302763041|ref|XP_002964942.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
 gi|300167175|gb|EFJ33780.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
          Length = 604

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 163/584 (27%), Positives = 296/584 (50%), Gaps = 29/584 (4%)

Query: 1   MSSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY 60
           M    +K  V   S++Y S ++  C + +  +  K +H  + +  F +   L    +++Y
Sbjct: 23  MLELFRKMDVEPDSITYAS-ILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMY 81

Query: 61  SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF---------------- 104
           S+ G  +   ++FD I   +   WN  + GL++      AL +F                
Sbjct: 82  SKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKASRS 141

Query: 105 --DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC- 161
             D + +  V +WN+MIS YA  G +  +L +F +M L+GV+P   TF  ++   SS   
Sbjct: 142 NFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQMSLEGVKPDARTFVSVIGACSSLQA 201

Query: 162 --HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLI 218
              G+ +       G+         +L+ +Y K G L  A  +F  ++   +++SWNS+I
Sbjct: 202 LEKGRAVEEQATSMGIEEGRT----ALLSLYAKCGNLEAARDIFDKLKYRKNVVSWNSMI 257

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +    SG G  AL+ +  M+  G  PD+ T +  + ACT      KG ++ +   +    
Sbjct: 258 AAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHSRITESKIR 317

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           ++  + +A +++++KC  LE ++  FE++ R +    + M+  + ++G+   AL+L+  M
Sbjct: 318 TDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQHGYDREALDLYLRM 377

Query: 339 LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV-VASSLMEMYAKTGS 396
           + E  +P+E TL+  L++   I  ++ G   HS    +    N + + +SL+ MYAK G 
Sbjct: 378 VSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCGC 437

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +  +  +F  L +RD  SWNTI++G   +G   E L +  E++++G+ PD +T A VLLA
Sbjct: 438 LAIANTMFSNLQRRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLA 497

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCS 516
           C++ G +D+G   F +M+ E+GV    EHY C++DLL +AG++  A ++  +MP++P   
Sbjct: 498 CSHAGLLDRGRSHFLSMEMEFGVAHDTEHYLCMVDLLSRAGRVESAEELVHSMPYEPPAM 557

Query: 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560
            W ++L +S +  D+      AE    L+  S   Y LL   Y+
Sbjct: 558 GWTTLLGSSEVQADLDRGSRYAEVAAGLEPGSSSSYVLLWNIYS 601



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 221/477 (46%), Gaps = 62/477 (12%)

Query: 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQ 165
           + D++SWNSM+  Y+  G+ +  LE+F KM    V P   T++ +L   S+      GK+
Sbjct: 1   DKDLISWNSMVVAYSQHGHGEEMLELFRKMD---VEPDSITYASILGACSAMELLELGKE 57

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           +H  + RS    S+  L  +LI+MY K GVL  A  VF  ++ +D   WN++ISG    G
Sbjct: 58  VHARVSRSRFK-SDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHG 116

Query: 226 YGELAL-------------DQ------------------------------------FYS 236
               AL             D+                                    F+ 
Sbjct: 117 RAREALGLFERMKAESVRIDKASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQ 176

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           M   G  PD  T   VI AC+ L+ L+KG+ V   +  +G       L   + L++KC  
Sbjct: 177 MSLEGVKPDARTFVSVIGACSSLQALEKGRAVEEQATSMGIEEGRTAL---LSLYAKCGN 233

Query: 297 LEDSVRLFEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
           LE +  +F++L  R +    N MI+ Y + G G  ALEL++LM  E ++P + T +  L 
Sbjct: 234 LEAARDIFDKLKYRKNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALG 293

Query: 356 S-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS 414
           +         G + HS   +S   ++  + ++++ MYAK G ++++   F K+ +++ V+
Sbjct: 294 ACTSYGGSAKGVEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVT 353

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK 474
           W+ ++    Q+G   E LD++  ++ EG  P  ITLA  L AC+  G + +G  + S ++
Sbjct: 354 WSAMVGAFIQHGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQ 413

Query: 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
               +         ++++  + G L  A  + S +  +   S W +I+   A +GDV
Sbjct: 414 ATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFS-WNTIIVGHAHHGDV 469



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 142/284 (50%), Gaps = 27/284 (9%)

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIK 374
           N M+  Y ++G GE  LELF+ M   D+ P   T + +L +   +  +E G + H+   +
Sbjct: 8   NSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAMELLELGKEVHARVSR 64

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S F S+  +A++L+ MY+K G ++S+  +F  +   D   WN ++ GL Q+GRA E L +
Sbjct: 65  SRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGL 124

Query: 435 FEELLEEGLPPDRITLA--------------AVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           FE +  E +  D+ + +              A++ +    G   K +L+F  M  E GV 
Sbjct: 125 FERMKAESVRIDKASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQMSLE-GVK 183

Query: 481 PGEEHYACIIDLLC--QAGQLGKAIDITST-MPFQPGCSIWESILRASAIYGDVKLTENV 537
           P    +  +I      QA + G+A++  +T M  + G +   ++L   A  G+++   ++
Sbjct: 184 PDARTFVSVIGACSSLQALEKGRAVEEQATSMGIEEGRT---ALLSLYAKCGNLEAARDI 240

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
            +++   +  + + ++ +  AYA  GR    + + ++M++ G+ 
Sbjct: 241 FDKLKYRK--NVVSWNSMIAAYAQSGRGREALELYELMKEEGVQ 282


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 175/653 (26%), Positives = 309/653 (47%), Gaps = 72/653 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S L+  C   KS    + +HGH+  LGF  H  L  + +  YS F               
Sbjct: 178 SSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAF--------------- 222

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                 N+ +   + ++N +    +    P      WN +IS Y   G+   AL  + +M
Sbjct: 223 ------NLLVDAHVITENSN----ILHPFP------WNLLISSYVRNGFCQKALSAYKQM 266

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             +G+RP  FT+  +L           GK++H S+  S +  S +++ N+LI MYGK G 
Sbjct: 267 VKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWS-LIVHNALISMYGKCGK 325

Query: 196 LYYAFGVFLNMEELDIISWNSLIS-----------------------------------G 220
           +  A  +F  + E D +SWNS+IS                                   G
Sbjct: 326 VGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGG 385

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +G  + AL+    MR  G   D   + I + AC+ + +   GK++ + +++  F   
Sbjct: 386 YLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEV 445

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V ++ I ++S+C  L+ +  LF+ ++       N +IS        E A  L + ML 
Sbjct: 446 DTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLL 505

Query: 341 EDIRPTEFTLSCVLS-SIPIPPVEHGSQFHS-MAIKSGFDSNAVVASSLMEMYAKTGSID 398
             I P   T++ VL     +  ++HG +FH  M  +  F  + ++ ++L++MYA++G + 
Sbjct: 506 SGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVL 565

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            +  +F  L +RD +++ +++ G    G     L +FEE+    + PD IT+ AVL AC+
Sbjct: 566 EARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACS 625

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           + G V +G L+F  M+  YG+ P  EH+AC+ DL  +AG L KA +I   MP++P  ++W
Sbjct: 626 HSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMW 685

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
            +++ A  I+ + ++ E  AE++++++  +P  Y L+   YA  G W  + +V+  MR  
Sbjct: 686 ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDL 745

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
           G+ K  GC+W+ +      F   +  +    +IY +L  LT  +++ G +  E
Sbjct: 746 GVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVIKEAGYISSE 798



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 174/407 (42%), Gaps = 46/407 (11%)

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG----FTF 150
           + L++A + F  +    + S  + +  + S G    A +  S ++L     S        
Sbjct: 118 NALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPI 177

Query: 151 SILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           S LLS+   V S   G+Q+HG +I  G    + +L   L+  Y    +L  A  +  N  
Sbjct: 178 SSLLSSCTDVKSLAEGRQLHGHIISLGFE-QHPILVPKLVTFYSAFNLLVDAHVITENSN 236

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
            L    WN LIS    +G+ + AL  +  M   G  PD +T   V+ AC +  +L  GK+
Sbjct: 237 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 296

Query: 268 VFALSVKVGFLSNS-IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           V   S+    +  S IV +A I ++ KC ++  +  LF+++   D    N MIS Y   G
Sbjct: 297 VHE-SINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMG 355

Query: 327 FGEVALELFQLMLREDI------------------------------RPTEFTLSCVLSS 356
               A ELF  M  EDI                              R     L  V   
Sbjct: 356 MWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALI 415

Query: 357 IPIPPVEH------GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
           I +    H      G + HS AI+S F     V +SL+ MY++   +  +  +F  ++ +
Sbjct: 416 IGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAK 475

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
            L+SWN+I+ G     R+ E   +  E+L  G+ P+ +T+A+VL  C
Sbjct: 476 SLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLC 522


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 174/626 (27%), Positives = 318/626 (50%), Gaps = 51/626 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           S L +  +S +     + +HGH+ + G  +    + N  +++Y++ G             
Sbjct: 383 SALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGA------------ 430

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                              +++A K+F  +   D +SWN++IS     G  + A+  +S 
Sbjct: 431 -------------------IESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSL 471

Query: 138 MQLQGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           M+   + PS F    L+S++SS         G+Q+H   ++ GL L   V  N L+ MYG
Sbjct: 472 MRQSCISPSNFA---LISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSV-SNVLVKMYG 527

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA--LDQFYSMRYSGYSPDEYTI 249
           + G +   + VF +M E D +SWN+++ G   S    ++  +  F +M   G  P++ T 
Sbjct: 528 ECGAMSDYWKVFNSMAEHDEVSWNTMM-GVMASSQTPISEIVKVFNNMMRGGLIPNKVTF 586

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL-D 308
             ++ A + L  L+ GKQV A  +K G + +++V +A I  ++K   +     LF  + D
Sbjct: 587 INLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSD 646

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQ 367
           R D    N MIS Y   G  + A++   LM+         T S +L++   +  +E G +
Sbjct: 647 RRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGME 706

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            H+  I+S  +S+ VV S+L++MY+K G +D ++++F  + +R+  SWN+++ G  ++G 
Sbjct: 707 LHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGL 766

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             + +++FEE+L     PD +T  +VL AC++ G V++G+  F  M  ++G++P  EHY+
Sbjct: 767 GRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMP-DHGILPQIEHYS 825

Query: 488 CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL---RASAIYGDVKLTENVAERMMDL 544
           C+IDLL +AG++ K  +    MP +P   IW ++L   R S    ++ L    +  ++++
Sbjct: 826 CVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEI 885

Query: 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQ 604
           +  +P+ Y L +  +A  G WE   + +  MR+    K  G SW+ + + ++TF AG+  
Sbjct: 886 EPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRS 945

Query: 605 HHGGQKIYLVLRLLTWEMEDEGCVYL 630
           H   ++IY  L  L   + + G V L
Sbjct: 946 HPNTKEIYEKLNFLIQNIRNAGYVPL 971



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/549 (24%), Positives = 262/549 (47%), Gaps = 41/549 (7%)

Query: 41  LFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100
           + K G ++  Y+G+  +  ++R G +D+   +F  + QKN ++ N  + GL++ D  + A
Sbjct: 301 VLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEA 360

Query: 101 LKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA 160
           +K+F  +   + V  N+           D  + + S +    +   G             
Sbjct: 361 VKIF--VGTRNTVDVNA-----------DTYVVLLSALAEYSISEEGLRI---------- 397

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
             G+ +HG M+R+GL+   + + N L++MY K G +  A  +F  ME  D ISWN++IS 
Sbjct: 398 --GRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISA 455

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +G  E A+  +  MR S  SP  + +   +++C  L+ L  G+QV   +VK G   +
Sbjct: 456 LDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLD 515

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG--RYGFGEVALELFQLM 338
           + V +  + ++ +C  + D  ++F  +   D    N M+      +    E+ +++F  M
Sbjct: 516 TSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEI-VKVFNNM 574

Query: 339 LREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           +R  + P + T   +L+++ P+  +E G Q H+  +K G   + VV ++L+  YAK+G +
Sbjct: 575 MRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDM 634

Query: 398 DSSTEIFVKL-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
            S   +F  + D+RD +SWN+++ G   NG   E +D    ++  G   D  T + +L A
Sbjct: 635 GSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNA 694

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACIIDLLCQAGQLGKAIDITSTMPFQ 512
           C     +++GM + +     +G+    E      + ++D+  + G++  A  + ++M  +
Sbjct: 695 CASVAALERGMELHA-----FGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQR 749

Query: 513 PGCSIWESILRASAIYG-DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
              S W S++   A +G   K  E   E +   + P  + +  +  A +  G  E  +  
Sbjct: 750 NEFS-WNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEY 808

Query: 572 KKVMRKNGI 580
            ++M  +GI
Sbjct: 809 FEMMPDHGI 817



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 196/444 (44%), Gaps = 54/444 (12%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  L K G N   +L N  ++ Y++        Q+FDE+P++N +SW  CL      
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWT-CL------ 133

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM--QLQ-GVRPSGFTFS 151
                                   +SGY   G ++ A  +F  M  ++Q G RP+ FTF 
Sbjct: 134 ------------------------VSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFG 169

Query: 152 ILLSTVSSACHGK-----QIHGSMIRSGLSLSNVVLGNSLIDMYGK--LGVLYYAFGVFL 204
            LL         +     Q+HG + ++  + SN  + N+LI MYG   +G    A  VF 
Sbjct: 170 TLLRACQDGGPDRLGFAVQVHGLVSKTEYA-SNTTVCNALISMYGSCTVGPPILAQRVFD 228

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG----YSPDEYTI-SIVINACTKL 259
                D+I+WN+L+S     G        F  M+         P E+T  S++  A    
Sbjct: 229 GTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSS 288

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            +     QV    +K G  S+  V SA +  F++    +++  +F  L + +   +N +I
Sbjct: 289 GSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLI 348

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-----SIPIPPVEHGSQFHSMAIK 374
               R  F E A+++F +  R  +     T   +LS     SI    +  G   H   ++
Sbjct: 349 VGLVRQDFSEEAVKIF-VGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLR 407

Query: 375 SGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD 433
           +G  D    V++ L+ MYAK G+I+S+++IF  ++  D +SWNTI+  L QNG   E + 
Sbjct: 408 TGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVM 467

Query: 434 VFEELLEEGLPPDRITLAAVLLAC 457
            +  + +  + P    L + L +C
Sbjct: 468 HYSLMRQSCISPSNFALISSLSSC 491



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H   IK G + +  + + L+  YAK   + +++++F ++ +R+ VSW  ++ G   +G
Sbjct: 82  NLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHG 141

Query: 427 RAAETLDVFEELLEE---GLPPDRITLAAVLLACNYGG 461
            A E   VF  +L E   G  P   T   +L AC  GG
Sbjct: 142 IAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGG 179


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 179/592 (30%), Positives = 288/592 (48%), Gaps = 46/592 (7%)

Query: 36  TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSD 95
           ++H    K G + H ++ N  LD Y                          C  GLL + 
Sbjct: 370 SLHPFAIKFGLDTHVFVCNTLLDAY--------------------------CKHGLLAA- 402

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
               A +VF E+ + D V++N+M+ G +  G    AL++F+ M     R +G++   L  
Sbjct: 403 ----ARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM-----RRAGYSRHPL-- 451

Query: 156 TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN 215
                 H  Q   S  RS  S+ NV + NSL+D Y K   L     +F  M E D +S+N
Sbjct: 452 ------HLLQYSHSRSRS-TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYN 504

Query: 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275
            +I+    +      L  F  M+  G+       + +++    L ++  GKQ+ A  V +
Sbjct: 505 VIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLL 564

Query: 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF 335
           G  S  ++ +A ID++SKC  L+ +   F             +I+ Y + G  E AL+LF
Sbjct: 565 GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLF 624

Query: 336 QLMLREDIRPTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394
             M R  +RP   T S ++ +S  +  +  G Q HS  I+SG+ S+    S L++MYAK 
Sbjct: 625 SDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKC 684

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           G +D +   F ++ +R+ +SWN ++      G A   + +FE +L  G  PD +T  +VL
Sbjct: 685 GCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVL 744

Query: 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG 514
            AC++ G  D+ M  F  MK +Y + P +EHYAC+ID L + G   +   +   MPF+  
Sbjct: 745 AACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKAD 804

Query: 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574
             IW SIL +  I+G+ +L    A+++  ++     PY +L+  YA  G+WE    VKK+
Sbjct: 805 PIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKI 864

Query: 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           MR  G+ K +G SW+ IK +IY+F + +L      +I   L  L  EM+ +G
Sbjct: 865 MRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQG 916



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/505 (27%), Positives = 244/505 (48%), Gaps = 34/505 (6%)

Query: 45  GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104
           GF+  TY  N  L      G       +FD++P KN  S N+ L     S +L  A  +F
Sbjct: 252 GFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLF 311

Query: 105 DEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGK 164
              P  +  +W  M+  +A+ G +  AL +F  M  +GV P   T + +L+     C   
Sbjct: 312 LSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL--PGCTVP 369

Query: 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNS 224
            +H   I+ GL  ++V + N+L+D Y K G+L  A  VFL M + D +++N+++ GC   
Sbjct: 370 SLHPFAIKFGLD-THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKE 428

Query: 225 GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284
           G    AL  F +MR +GYS   + + ++  + ++ R         + SV   F++NS+  
Sbjct: 429 GLHTQALQLFAAMRRAGYS--RHPLHLLQYSHSRSR---------STSVLNVFVNNSL-- 475

Query: 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR---- 340
              +D +SKC+ L+D  RLF+++   D    NV+I+ Y         L LF+ M +    
Sbjct: 476 ---LDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD 532

Query: 341 EDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
             + P    LS   S   +P V  G Q H+  +  G  S  ++ ++L++MY+K G +D++
Sbjct: 533 RQVLPYATMLSVAGS---LPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 589

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
              F    ++  +SW  ++ G  QNG+  E L +F ++   GL PDR T ++++ A +  
Sbjct: 590 KSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSL 649

Query: 461 GFVDKGMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
             +  G  + S +     +  V  G    + ++D+  + G L +A+     MP +   S 
Sbjct: 650 AMIGLGRQLHSYLIRSGYKSSVFSG----SVLVDMYAKCGCLDEALRTFDEMPERNSIS- 704

Query: 518 WESILRASAIYGDVKLTENVAERMM 542
           W +++ A A YG+ K    + E M+
Sbjct: 705 WNAVISAYAHYGEAKNAIKMFEGML 729



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S       K IH  L  LG  +   LGN  +D+YS+ G  D     F    +K+ ISW  
Sbjct: 547 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISW-- 604

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
                                         ++I+GY   G  + AL++FS M+  G+RP 
Sbjct: 605 -----------------------------TALITGYVQNGQHEEALQLFSDMRRAGLRPD 635

Query: 147 GFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             TFS ++   SS      G+Q+H  +IRSG   S+V  G+ L+DMY K G L  A   F
Sbjct: 636 RATFSSIIKASSSLAMIGLGRQLHSYLIRSGYK-SSVFSGSVLVDMYAKCGCLDEALRTF 694

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M E + ISWN++IS   + G  + A+  F  M + G++PD  T   V+ AC+     D
Sbjct: 695 DEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLAD 754

Query: 264 KGKQVFAL 271
           +  + F L
Sbjct: 755 ECMKYFHL 762



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 62/317 (19%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I    S       + +H +L + G+ +  + G+  +D+Y++ G  D+ L+ FDE+P+
Sbjct: 640 SSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE 699

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEM 134
           +N ISWN  +           A+K+F+ +      PD V++ S+++  +  G +D  ++ 
Sbjct: 700 RNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKY 759

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           F  M+ Q        +SI       AC                        +ID  G++G
Sbjct: 760 FHLMKHQ--------YSISPWKEHYAC------------------------VIDTLGRVG 787

Query: 195 VLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGEL---ALDQFYSMRYSGYSPDEYTIS 250
                  + + M  + D I W S++  C   G  EL   A D+ + M  +  +P  Y I 
Sbjct: 788 CFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATP--YVIL 845

Query: 251 IVI---------NACTKLRNLDKGKQVFALSVKVGF----LSNSIVLSATIDLFSK-CNR 296
             I          AC K    D+G     +  + G+    +   I   A+ DL S   + 
Sbjct: 846 SNIYARAGQWEDAACVKKIMRDRG-----VRKESGYSWVEIKQKIYSFASNDLTSPMIDE 900

Query: 297 LEDSV-RLFEQLDRWDY 312
           ++D + RL++++D+  Y
Sbjct: 901 IKDELDRLYKEMDKQGY 917


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/459 (32%), Positives = 260/459 (56%), Gaps = 6/459 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK +H  +++ G  L ++   N L++MY K   L  A  +F  M E + IS+ +LI G  
Sbjct: 57  GKGLHCEILKRGGCL-DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            S     A++ F  + +    P+++T + V+ AC  +  L+ G Q+    +K+G  S+  
Sbjct: 116 ESVRFLEAIELFVRL-HREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVF 174

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D+++KC R+E+S+ LF +    +    N +I  + + G GE AL LF  ML   
Sbjct: 175 VSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYR 234

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++ TE T S  L +   +  +E G Q HS+ +K+ FD + VV ++L++MYAK GSI  + 
Sbjct: 235 VQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDAR 294

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            +F  ++K+D VSWN ++ G + +G   E L +F+++ E  + PD++T   VL AC   G
Sbjct: 295 LVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAG 354

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            +D+G   F++M +++G+ P  EHY C++ LL + G L KA+ +   +PFQP   +W ++
Sbjct: 355 LLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRAL 414

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L A  I+ D++L    A+R+++++      + LL+  YA   RW+ +  V+K M++ G+ 
Sbjct: 415 LGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVK 474

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTW 620
           K  G SWI  +  +++F  G+  H    ++ ++  +L W
Sbjct: 475 KEPGLSWIESQGTVHSFTVGDTSH---PEVRVINGMLEW 510



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 197/393 (50%), Gaps = 11/393 (2%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           Q   R  S +S    +   GH+    FN+H Y  N   D   +   S       + + + 
Sbjct: 10  QFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAY-ANALQDCIQKDEPSRGKGLHCEILKRG 68

Query: 80  NCI---SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
            C+   +WNI L   +KSD L  A K+FDE+PE + +S+ ++I GYA       A+E+F 
Sbjct: 69  GCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFV 128

Query: 137 KMQLQGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           ++  + V P+ FTF+ +L   +T+     G QIH  +I+ GL  S+V + N+L+D+Y K 
Sbjct: 129 RLHRE-VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLH-SDVFVSNALMDVYAKC 186

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  +  +F      + ++WN++I G    G GE AL  F +M        E T S  +
Sbjct: 187 GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSAL 246

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            AC  L  L+ G Q+ +L+VK  F  + +V +A ID+++KC  ++D+  +F+ +++ D  
Sbjct: 247 RACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEV 306

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ--FHSM 371
             N MIS Y  +G G  AL +F  M   +++P + T   VLS+     +    Q  F SM
Sbjct: 307 SWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSM 366

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
               G +      + ++ +  + G +D + ++ 
Sbjct: 367 IQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLI 399



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 137/293 (46%), Gaps = 36/293 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C + +  +    IH H+ K+G ++  ++ N  +D+Y++ G  ++ ++LF E P 
Sbjct: 142 ASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPH 201

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N ++W                               N++I G+   G  + AL +F  M
Sbjct: 202 RNDVTW-------------------------------NTVIVGHVQLGDGEKALRLFLNM 230

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
               V+ +  T+S  L   +S      G QIH   +++     ++V+ N+LIDMY K G 
Sbjct: 231 LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFD-KDIVVTNALIDMYAKCGS 289

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A  VF  M + D +SWN++ISG    G G  AL  F  M+ +   PD+ T   V++A
Sbjct: 290 IKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSA 349

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQL 307
           C     LD+G+  F   ++   +   I   +  + L  +   L+ +V+L +++
Sbjct: 350 CANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEI 402


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 293/558 (52%), Gaps = 39/558 (6%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           NL  A ++F+ I  P +  +N +I  +   G    A+ +F +++ +G+ P  FT+  +  
Sbjct: 81  NLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFK 140

Query: 156 TVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            +        G++++G +++SGL     V  NSL+DMY ++G +     VF  M + D++
Sbjct: 141 AIGCLGEVREGEKVYGFVVKSGLEFDTYVC-NSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQV--- 268
           SWN LISG       E A+D F  M+  S   P+E T+   ++AC  L+ L+ GK++   
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259

Query: 269 ----FALSVKVGF-----------------------LSNSIVLSATIDLFSKCNRLEDSV 301
                  ++K+G                        +   I  ++ +  +  C +L+++ 
Sbjct: 260 VREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEAR 319

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IP 360
            LFE+    D  +   MI+ Y ++   + A+ LF+ M  + + P  FTL  +L+    + 
Sbjct: 320 ELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLG 379

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            +E G   H    ++    +AVV ++L+EMYAK G I+ S EIF  L ++D  SW +I+ 
Sbjct: 380 TLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIIC 439

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           GL  NG+ ++ L++F E+++ G+ PD IT   VL AC++GG V++G   F +M   Y + 
Sbjct: 440 GLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIE 499

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMP---FQPGCSIWESILRASAIYGDVKLTENV 537
           P  EHY C+IDLL +AGQL +A ++    P    +    ++ ++L A   +G+V++ E V
Sbjct: 500 PKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERV 559

Query: 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYT 597
           A+R++ ++      ++LL   YA   RWE + +V++ M+  G+ KV GCS + +   ++ 
Sbjct: 560 AKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHE 619

Query: 598 FNAGELQHHGGQKIYLVL 615
           F  G+  H   ++IY +L
Sbjct: 620 FLVGDASHPEMREIYSML 637



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 151/296 (51%), Gaps = 8/296 (2%)

Query: 25  CLSFKSFDFAKTIHGHLF-KLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           C++ K  +  K IH ++  +LGF     +GN  +D+Y + G      ++F+++P K  I 
Sbjct: 244 CIALKMLELGKEIHRYVREQLGFTIK--IGNALVDMYCKCGHLSIAREIFNDMPIKTVIC 301

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           W   + G +    LD A ++F+  P  DVV W +MI+GY      D A+ +F +MQ++ V
Sbjct: 302 WTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRV 361

Query: 144 RPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            P  FT   LL+    + +   GK IHG +  + + +  VV G +LI+MY K G +  + 
Sbjct: 362 SPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVV-GTALIEMYAKCGFIEKSL 420

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR 260
            +F  ++E D  SW S+I G   +G    AL+ F  M  +G  PD+ T   V++AC+   
Sbjct: 421 EIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGG 480

Query: 261 NLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            +++G++ F     V  +   +      IDL  +  +L+++  L E+    +  VI
Sbjct: 481 LVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVI 536



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 188/413 (45%), Gaps = 76/413 (18%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + ++G + K G    TY+ N  +D+Y+  G   ++ Q+F+E+PQ++ +SWN+       
Sbjct: 151 GEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNV------- 203

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRPSGFTFSI 152
                                   +ISGY  C   + A+++F +MQ Q  +RP+  T   
Sbjct: 204 ------------------------LISGYVKCRRYEDAVDVFRRMQQQSSLRPNEAT--- 236

Query: 153 LLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           ++ST+S+         GK+IH   +R  L  + + +GN+L+DMY K G L  A  +F +M
Sbjct: 237 VVSTLSACIALKMLELGKEIH-RYVREQLGFT-IKIGNALVDMYCKCGHLSIAREIFNDM 294

Query: 207 EELDIISWNSLISGCFN--------------------------SGYGEL-----ALDQFY 235
               +I W S++SG  N                          +GY +      A+  F 
Sbjct: 295 PIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFR 354

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M+    SPD +T+  ++  C +L  L++GK +     +   + +++V +A I++++KC 
Sbjct: 355 EMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCG 414

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            +E S+ +F  L   D A    +I      G    ALELF  M++  ++P + T   VLS
Sbjct: 415 FIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLS 474

Query: 356 SIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
           +      VE G + F SM      +        L+++  + G +D + E+  K
Sbjct: 475 ACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEK 527



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 193/410 (47%), Gaps = 35/410 (8%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG-KLGVLYYAFGVFLNMEELDI 211
           LL    S  H KQI   ++R+G   S   L   ++      +G L+YA  +F  ++   +
Sbjct: 38  LLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGL 97

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
             +N +I     +G    A+  F  +R  G SPD +T   V  A   L  + +G++V+  
Sbjct: 98  FIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGF 157

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            VK G   ++ V ++ +D++++  R+++  ++FE++ + D    NV+IS Y +    E A
Sbjct: 158 VVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217

Query: 332 LELFQLMLRE-DIRPTEFTLSCVLSS-IPIPPVEHGSQFH------------------SM 371
           +++F+ M ++  +RP E T+   LS+ I +  +E G + H                   M
Sbjct: 218 VDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDM 277

Query: 372 AIKSGFDSNA------------VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIM 419
             K G  S A            +  +S++  Y   G +D + E+F +   RD+V W  ++
Sbjct: 278 YCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMI 337

Query: 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479
            G  Q  R  + + +F E+  + + PDR TL A+L  C   G +++G  +   + +E  +
Sbjct: 338 NGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYI-DENKI 396

Query: 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           M        +I++  + G + K+++I + +  +   S W SI+   A+ G
Sbjct: 397 MIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTAS-WTSIICGLAMNG 445



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 351 SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA--KTGSIDSSTEIFVKLD 408
           SC+        ++H  Q  +  +++GF  +    +  M        G++  +  IF  +D
Sbjct: 34  SCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYID 93

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
              L  +N ++   T+NG   + + +F +L EEGL PD  T   V  A    G V +G  
Sbjct: 94  IPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEK 153

Query: 469 VFSAMKEEYGVMPGEEH--YAC--IIDLLCQAGQLGKAIDITSTMP 510
           V+      + V  G E   Y C  ++D+  + G++     +   MP
Sbjct: 154 VYG-----FVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMP 194



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 54/225 (24%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C    + +  K IHG++ +        +G   +++Y++ G  +  L++F+ + +K+
Sbjct: 371 LLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKD 430

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             SW                                S+I G A  G +  ALE+F++M  
Sbjct: 431 TASW-------------------------------TSIICGLAMNGKTSKALELFAEMVQ 459

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSG----LSLSNVVLGNSLIDMYGKLGVL 196
            GV+P   TF  +LS  S        HG ++  G     S++ V      ++ YG L  L
Sbjct: 460 TGVKPDDITFIGVLSACS--------HGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDL 511

Query: 197 YYAFGVFLNMEEL---------DIIS--WNSLISGCFNSGYGELA 230
               G     EEL         ++I   + +L+S C   G  E+ 
Sbjct: 512 LGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMG 556


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 5/470 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G++IH  +   G   + +   N L+ MY K G L  A  +F  + E  ++SW+++I    
Sbjct: 4   GRRIHSRLSLCGFHRATIA-QNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 223 NSGYGELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL--S 279
             G G+ AL  F+ MR  G   P+  T + V NAC  + +L++G+++ AL++  G L  S
Sbjct: 63  LHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339
           N+I+ +A ++++ +C  LE++ ++F+ +D  D      MI+          ALELF  M 
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 340 REDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398
            E I PT  TL+ VL++      ++ G Q HS    SGF S+ +  ++L++MYAK GS++
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458
            S+++F  ++ R+ VSW  ++  L Q+G+  E L++F+E+  EG+  D  T   VL AC+
Sbjct: 243 CSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 302

Query: 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW 518
           + G + + +  F +M E+Y + P E HY   +D + +AG+L  A ++  +MPF P    W
Sbjct: 303 HAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTW 362

Query: 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
           +++L A  I+   +    VAE +  L     + Y+LL   YA  GR+   +RV+K M   
Sbjct: 363 KTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDR 422

Query: 579 GINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           G+ KV G S+I +KN+++ F AG+  H    +I L L  L   M + G V
Sbjct: 423 GLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYV 472



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 179/377 (47%), Gaps = 19/377 (5%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLS 155
           LD A  +F+ I E  VVSW++MI  YA  G    AL +F +M+  G V P+  TF    +
Sbjct: 36  LDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTF----T 91

Query: 156 TVSSAC-------HGKQIHGSMIRSG-LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
            V +AC        G++IH   + SG L  SN +L N+L++MY + G L  A  VF  M+
Sbjct: 92  GVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTMD 151

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             D  SW S+I+ C  +     AL+ F+ M   G  P   T++ V+NAC     L  GKQ
Sbjct: 152 HPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQ 211

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           + +     GF S+ +  +A +D+++KC  LE S ++F  ++  +      MI+   ++G 
Sbjct: 212 IHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQ 271

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVVAS 385
           G+ ALELF+ M  E +     T  CVL +     +  E    FHSM              
Sbjct: 272 GDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYC 331

Query: 386 SLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
             ++   + G +  + E+   +    + ++W T++     + +A     V  ELL +  P
Sbjct: 332 RALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKV-AELLSKLAP 390

Query: 445 PDRITLAAVLLACNYGG 461
            D  ++A  LL   Y  
Sbjct: 391 ED--SMAYTLLGNVYAA 405



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 140/273 (51%), Gaps = 8/273 (2%)

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           +++G+++ +     GF   +I  +  + +++KC  L+++  +F  +        + MI  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 322 YGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG-- 376
           Y  +G G+ AL LF  M R D  + P   T + V ++   I  +E G + H++A+ SG  
Sbjct: 61  YALHGRGQEALLLFHRM-RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGEL 119

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             SNA++ ++L+ MY + GS++ + ++F  +D  D  SW +++   T+N    E L++F 
Sbjct: 120 KSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFH 179

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
            +  EG+PP  +TLA+VL AC   G +  G  + S + +  G          ++D+  + 
Sbjct: 180 RMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKC 238

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           G L  +  + + M  +   S W +++ A A +G
Sbjct: 239 GSLECSSKVFTAMETRNSVS-WTAMIAALAQHG 270



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 176/411 (42%), Gaps = 43/411 (10%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           E+   N I  N  L   ++  +L+ A KVFD +  PD  SW SMI+          ALE+
Sbjct: 118 ELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALEL 177

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLI 187
           F +M L+G+ P+    S+ L++V +AC        GKQIH  +  SG   S+V+   +L+
Sbjct: 178 FHRMNLEGIPPT----SVTLASVLNACACSGALKVGKQIHSRLDASGFH-SSVLAQTALL 232

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G L  +  VF  ME  + +SW ++I+     G G+ AL+ F  M   G   D  
Sbjct: 233 DMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADAT 292

Query: 248 TISIVINACTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           T   V+ AC+    + +  + F   V+              +D   +  RL+D+  L   
Sbjct: 293 TFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHS 352

Query: 307 LD-RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG 365
           +    +      +++    +   E A ++ +L+ +  + P +     +L ++      +G
Sbjct: 353 MPFHPETLTWKTLLNACRIHSQAERATKVAELLSK--LAPEDSMAYTLLGNVYAATGRYG 410

Query: 366 SQFHSMAIKSGFDSNAV----------VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
            Q   M ++ G     +          V + + E  A   +  S  EI ++L+K      
Sbjct: 411 DQ---MRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEK------ 461

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEE------GLPPDRITLAAVLLACNYG 460
             +   + + G    T DV   + EE      GL  +++ +A  L+A   G
Sbjct: 462 --LGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPG 510



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 51/224 (22%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + +++ C    +    K IH  L   GF++        LD+Y++ G+ +   ++F  +  
Sbjct: 194 ASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMET 253

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N +SW   +  L                               A  G  D ALE+F +M
Sbjct: 254 RNSVSWTAMIAAL-------------------------------AQHGQGDEALELFKEM 282

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI----------- 187
            L+G+     TF  +L   S        H  +I+  L   + ++ +  I           
Sbjct: 283 NLEGMVADATTFICVLRACS--------HAGLIKESLEFFHSMVEDYAIAPTETHYCRAL 334

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELA 230
           D  G+ G L  A  +  +M    + ++W +L++ C      E A
Sbjct: 335 DTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERA 378


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 267/476 (56%), Gaps = 3/476 (0%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +S+ +S  +   IH  +I+S L+ S+  +G+ L+ MY KLG    A  +F  M   D++S
Sbjct: 72  ISSCTSVSYCSAIHARVIKS-LNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVS 130

Query: 214 WNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           WNSL+SG    GY    L+ F  MR  SG  P+E T+  V++AC  +  LD+GK +  + 
Sbjct: 131 WNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVV 190

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK+G    + V+++ I+++ K   L+ + +LFE++        N M+  +   G+ E  +
Sbjct: 191 VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 250

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF LM R  I P + T+  +L +     +       H+   + GF+++ ++A++L+ +Y
Sbjct: 251 DLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLY 310

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +++S +IF ++  RD ++W  ++ G   +    E + +F+ +++EG+  D +T  
Sbjct: 311 AKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFT 370

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L AC++ G V++G   F  M E Y V P  +HY+C++DLL ++G+L  A ++  +MP 
Sbjct: 371 HLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPM 430

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W ++L A  +YG+V+L + VAE+++ L       Y +L+  Y+  G W    +V
Sbjct: 431 EPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKV 490

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
           + +M++  + +  GCS+I   N+I+ F  G+  H    +I+  L  L  ++ + GC
Sbjct: 491 RALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGC 546



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 190/386 (49%), Gaps = 44/386 (11%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S  +   IH  + K    +  ++G+R + +Y + G  +D  +LFDE+P K+ +SW  
Sbjct: 74  SCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSW-- 131

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRP 145
                                        NS++SG +  GY    L  F +M+ + G +P
Sbjct: 132 -----------------------------NSLMSGLSGRGYLGACLNAFCRMRTESGRQP 162

Query: 146 SGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           +  T   LLS VS+         GK +HG +++ G+S    V+ NSLI+MYGKLG L  A
Sbjct: 163 NEVT---LLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAA 218

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             +F  M    ++SWNS++    ++GY E  +D F  M+ +G +PD+ T+  ++ ACT  
Sbjct: 219 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 278

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
               + + + A   + GF ++ I+ +A ++L++K  RL  S  +FE++   D      M+
Sbjct: 279 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 338

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGF 377
           + Y  +  G  A++LF LM++E +     T + +LS+      VE G + F  M+     
Sbjct: 339 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 398

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEI 403
           +      S ++++  ++G ++ + E+
Sbjct: 399 EPRLDHYSCMVDLLGRSGRLEDAYEL 424



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 43/228 (18%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
           A++IH ++ + GFNA   +    L+LY++ G                             
Sbjct: 284 AESIHAYIHRCGFNADIIIATALLNLYAKLG----------------------------- 314

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
              L+ +  +F+EI + D ++W +M++GYA       A+++F  M  +GV     TF+ L
Sbjct: 315 --RLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHL 372

Query: 154 LSTVSSAC---HGK---QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
           LS  S +     GK   +I   + R    L +    + ++D+ G+ G L  A+ +  +M 
Sbjct: 373 LSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHY---SCMVDLLGRSGRLEDAYELIKSMP 429

Query: 208 -ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            E     W +L+  C    YG + L +  + +     P ++   I+++
Sbjct: 430 MEPSSGVWGALLGAC--RVYGNVELGKEVAEQLLSLDPSDHRNYIMLS 475


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 282/541 (52%), Gaps = 28/541 (5%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST--- 156
           A K+FD+IP+P+  +WN+M  GY   G+    + +F ++      P+ FTF +++ +   
Sbjct: 63  ARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGK 122

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
           +     G+++H    + G   SN  +  SLIDMY K G +  A+ VF  M E +++ W +
Sbjct: 123 LEGVREGEEVHCCATKHGFK-SNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTA 181

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTI--SIVINACTKLRNLDKGKQVFALSVK 274
           +I+G    G      D     R    +P+   +  S++I+   + +N+   +++F     
Sbjct: 182 IINGYILCG------DVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPN 235

Query: 275 VGFLS-----NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +S     N   ++  +++F K         +F+++   +    N +I  Y + G   
Sbjct: 236 RDTMSWNAMLNGYAVNGEVEMFEK---------VFDEMPERNVFSWNGLIGGYVKNGLFS 286

Query: 330 VALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
             LE F+ ML E  + P +FTL  VLS+   +  ++ G   H  A   G+  N  V + L
Sbjct: 287 ETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVL 346

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MYAK G I+++  +F  LD++D++SWNTI+ GL  +G A + L +F+ +  EG  PD 
Sbjct: 347 IDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDG 406

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           +T   +L AC + G V  G L F +M + Y ++P  EHY C++DLL +AG L +A++   
Sbjct: 407 VTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIR 466

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +P   IW ++L A  +Y +V++ E   +R+++L+  +P  + +++  Y   GR E 
Sbjct: 467 KMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSED 526

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
           + R+K  MR  G  K+ GCS I   + +  F + + +H   + IY VL+ LT  +   G 
Sbjct: 527 VARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGY 586

Query: 628 V 628
           V
Sbjct: 587 V 587



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 182/393 (46%), Gaps = 11/393 (2%)

Query: 150 FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           F  LL +  +     QI   ++  GL  ++ V  N  I    +   +++A  +F  + + 
Sbjct: 15  FITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPN-FITTCSRFKRIHHARKLFDKIPQP 73

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +  +WN++  G   +G+    +  F  +      P+ +T  ++I +C KL  + +G++V 
Sbjct: 74  NTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVH 133

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
             + K GF SNS V ++ ID++SK   +ED+ ++F ++   +  V   +I+ Y   G   
Sbjct: 134 CCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVV 193

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLME 389
               LF L    D+      +S  + S  +        F  M  +     NA     ++ 
Sbjct: 194 SGRRLFDLAPERDVVMWSVLISGYIESKNMAAAR--ELFDKMPNRDTMSWNA-----MLN 246

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRI 448
            YA  G ++   ++F ++ +R++ SWN ++ G  +NG  +ETL+ F+ +L EG + P+  
Sbjct: 247 GYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDF 306

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           TL AVL AC+  G +D G  V     E  G          +ID+  + G +  A+ + + 
Sbjct: 307 TLVAVLSACSRLGALDMGKWV-HVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNC 365

Query: 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
           +  +   S W +I+   AI+G       + +RM
Sbjct: 366 LDRKDIIS-WNTIINGLAIHGHAPDALGMFDRM 397


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 178/608 (29%), Positives = 306/608 (50%), Gaps = 58/608 (9%)

Query: 31  FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRG 90
           F F   +H  + K GF    ++GN  + +YSR+G                          
Sbjct: 203 FLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWG-------------------------- 236

Query: 91  LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG--YSDYALEMFSKMQLQGVRPSGF 148
                 LD A +VF+E+   D+VSWN+M+SGYA  G  Y   A+ +F  M    VR    
Sbjct: 237 -----GLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNM----VREGML 287

Query: 149 TFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
              + L+   SAC        GKQIHG   + G   ++V + N LI  Y K  VL  A  
Sbjct: 288 LDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYG-THVAVCNVLISTYSKCKVLRDAKA 346

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
           VF +M   +++SW +LIS        E  +  F +MR  G  P++ T   +++A T    
Sbjct: 347 VFQDMSARNVVSWTTLISI-----DEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNM 401

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           + +G  V  L +K    S   V ++ I +++K   +++S ++FE+L+       N +IS 
Sbjct: 402 VKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISG 461

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP---PVEHGSQFHSMAIKSGFD 378
           Y + G  + A   F   ++E I+P ++T   VL++I       ++HG + HS  IK G +
Sbjct: 462 YAQNGLCKEAFLTFLSAIKE-IKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLN 520

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           ++  VA +L++MY K G+I+ S  +F +  ++   SW  ++    ++G     + +++E+
Sbjct: 521 TDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEI 580

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
             EG   D IT  +VL AC   G VD G ++F +M +++ + P  EHY+ ++D+L + G+
Sbjct: 581 EREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGR 640

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558
           L +A ++   +P  PG S+ +S+L +  ++G+V++ E V + ++ +   S  PY L+   
Sbjct: 641 LDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGSSGPYVLMANL 700

Query: 559 YAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKN----RIYTFNAGELQHHGGQKIYLV 614
           YA +G WE +  V+K MR  G+ K  G SW+ + N     ++ F++G+  H   + I  +
Sbjct: 701 YAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLHLHGFSSGDKSHPESETIDRM 760

Query: 615 LRLLTWEM 622
              L  +M
Sbjct: 761 AEFLGLQM 768



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 255/573 (44%), Gaps = 94/573 (16%)

Query: 26  LSFKS----FDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           LSFK+    F     IHG +   GF +   + N  + +Y + G                 
Sbjct: 91  LSFKACRGEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAG----------------- 133

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                           + AL VF+ +  PD+VSWN+++SG+     S  AL     M L 
Sbjct: 134 --------------RFELALCVFEGLSCPDIVSWNTILSGFEK---SVDALNFACFMHLN 176

Query: 142 GVRPSGFTFSILLSTV--------SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           GV     T++  LS               G Q+H  +++ G     V +GN+L+ MY + 
Sbjct: 177 GVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFG-CEVFIGNALVTMYSRW 235

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSG--YGELALDQFYSMRYSGYSPDEYTISI 251
           G L  A  VF  M   D++SWN+++SG    G  YG  A+  F +M   G   D  +++ 
Sbjct: 236 GGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLTG 295

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            I+AC   +NL+ GKQ+  L+ K+G+ ++  V +  I  +SKC  L D+  +F+ +   +
Sbjct: 296 AISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARN 355

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
                 +IS        E  + LF  M  + + P + T   +L +I I   V+ G   H 
Sbjct: 356 VVSWTTLISID-----EENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHG 410

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + +KS   S   V++SL+ MYAK  SI  S +IF +L+ +  +SWN ++ G  QNG   E
Sbjct: 411 LCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKE 470

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
               F   ++E + P++ T  +VL A               A  E+  +  G+  ++ +I
Sbjct: 471 AFLTFLSAIKE-IKPNQYTFGSVLNAI--------------AAAEDISLKHGQRCHSHLI 515

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550
                  +LG   D     PF  G     ++L      G++    N ++R+ + + P   
Sbjct: 516 -------KLGLNTD-----PFVAG-----ALLDMYGKRGNI----NESQRVFN-ETPEKT 553

Query: 551 PYSL--LTQAYAMRGRWEAIVRVKKVMRKNGIN 581
            +S   +  AYA  G +E+++ + K + + G N
Sbjct: 554 QFSWTGMISAYARHGDYESVMSLYKEIEREGSN 586



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 183/385 (47%), Gaps = 34/385 (8%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF-----SILLSTV 157
           +F++IP+P+  S N  +  +        AL +F K Q Q      F F      + L+  
Sbjct: 40  LFEKIPQPNASSINRSMLNFLHKNLPFQALSVF-KNQTQ------FPFLQNIDEVTLALS 92

Query: 158 SSACHGK-----QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
             AC G+     QIHG ++ +G  +S V + NSL+ MY K G    A  VF  +   DI+
Sbjct: 93  FKACRGEFILGAQIHGFVVATGF-VSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIV 151

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK-----GKQ 267
           SWN+++SG F      L    F  M  +G   D  T +  ++ C      D      G Q
Sbjct: 152 SWNTILSG-FEKSVDALNFACF--MHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQ 208

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG- 326
           + +L VK GF     + +A + ++S+   L+++ R+F ++   D    N M+S Y + G 
Sbjct: 209 LHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGE 268

Query: 327 -FGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
            +G  A+ LF  M+RE +     +L+  +S+      +E G Q H +A K G+ ++  V 
Sbjct: 269 CYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVC 328

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           + L+  Y+K   +  +  +F  +  R++VSW T++    +N      + +F  +  +G+ 
Sbjct: 329 NVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLISIDEEN-----VVSLFNAMRVDGVY 383

Query: 445 PDRITLAAVLLACNYGGFVDKGMLV 469
           P+ +T   +L A      V +G++V
Sbjct: 384 PNDVTFIGLLHAITIRNMVKEGLMV 408



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 169/394 (42%), Gaps = 47/394 (11%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           I  C   K+ +F K IHG   KLG+  H  + N  +  YS+     D   +F ++  +N 
Sbjct: 297 ISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNV 356

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           +SW   +                  I E +VVS                   +F+ M++ 
Sbjct: 357 VSWTTLI-----------------SIDEENVVS-------------------LFNAMRVD 380

Query: 142 GVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           GV P+  TF  LL  ++       G  +HG  ++S LS S   + NSLI MY K   +  
Sbjct: 381 GVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLS-SEQNVSNSLITMYAKFESIQE 439

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           +  +F  +     ISWN+LISG   +G  + A   F S       P++YT   V+NA   
Sbjct: 440 SKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSA-IKEIKPNQYTFGSVLNAIAA 498

Query: 259 LRN--LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             +  L  G++  +  +K+G  ++  V  A +D++ K   + +S R+F +          
Sbjct: 499 AEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFSWT 558

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI---PIPPVEHGSQFHSMAI 373
            MIS Y R+G  E  + L++ + RE       T   VL++     +  V H   F SM  
Sbjct: 559 GMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGH-IIFDSMVK 617

Query: 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           K   +      S +++M  + G +D + E+  ++
Sbjct: 618 KHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQI 651


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 173/578 (29%), Positives = 296/578 (51%), Gaps = 44/578 (7%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +  + IH +  K+G ++     N  +D Y + G+   + Q+F+E  +KN +SW       
Sbjct: 129 EMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSW------- 181

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF- 150
                                   NS+I+G A  G    AL  F  M   G +P+  T  
Sbjct: 182 ------------------------NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTIS 217

Query: 151 SILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           SIL   V   C   GK+IHG  +R G   +++ + NSLIDMY K G    A  +F N++ 
Sbjct: 218 SILPVLVELECFKAGKEIHGFSMRMGTE-TDIFIANSLIDMYAKSGHSTEASTIFHNLDR 276

Query: 209 LDIISWNSLISGCFNSGYGELALDQF---YSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            +I+SWN++I+   N     L L+       M+ +G  P+  T + V+ AC +L  L  G
Sbjct: 277 RNIVSWNAMIA---NYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG 333

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           K++ A+ V++G  S+  V ++ ID+++KC  L  +  +F    R D    N++I  Y   
Sbjct: 334 KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSET 392

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
                +L LF  M     +P   +   V+S+   +  ++ G + H +A+++   S+  V+
Sbjct: 393 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVS 452

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +SL++ Y K G ID +  +F ++  +D+ SWNT+++G    G     + +FE + ++ + 
Sbjct: 453 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 512

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D ++  AVL AC++GG V++G   FS M  +  + P E HY C++DLL +AG + +A  
Sbjct: 513 YDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR-LEPTEMHYTCMVDLLGRAGFVEEAAK 571

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   +P  P  +IW ++L A  IYG+V+L    AE + +L+      Y LL+  YA  GR
Sbjct: 572 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 631

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           W+   +++++M+  G  K  GCSW+ I ++++ F A E
Sbjct: 632 WDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEE 669



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 144/543 (26%), Positives = 250/543 (46%), Gaps = 60/543 (11%)

Query: 20  QLIDRCLSF------KSFDFAK--TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           QL D    F       SFD  K   +HG +FKLGF+   Y+GN  L LY   G  +D   
Sbjct: 7   QLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND--- 63

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                       A ++FDE+PE DVVSWN++I   +  G    A
Sbjct: 64  ----------------------------ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEA 95

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLI 187
              +  M L+ V        I L  +S+A       ++IH   ++ GL  S V   N+L+
Sbjct: 96  RNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLD-SQVTTCNALV 154

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           D YGK G +   + VF    E + +SWNS+I+G    G    AL+ F  M  +G  P+  
Sbjct: 155 DAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSV 214

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           TIS ++    +L     GK++   S+++G  ++  + ++ ID+++K     ++  +F  L
Sbjct: 215 TISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL 274

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
           DR +    N MI+ Y        A+     M      P   T + VL +   +  +  G 
Sbjct: 275 DRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGK 334

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H+M ++ G  S+  V++SL++MYAK G + S+  +F    ++D VS+N +++G ++  
Sbjct: 335 EIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETD 393

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              ++L++F E+   G  PD ++   V+ AC     + +G       KE +GV      Y
Sbjct: 394 DCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG-------KEVHGVALRNHLY 446

Query: 487 A------CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540
           +       ++D   + G++  A  + + + F+   S W +++    + G+++   ++ E 
Sbjct: 447 SHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVAS-WNTMILGYGMIGELETAISMFEA 505

Query: 541 MMD 543
           M D
Sbjct: 506 MRD 508



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 186/393 (47%), Gaps = 37/393 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++   +  + F   K IHG   ++G     ++ N  +D+Y++ G S +   +F  + +
Sbjct: 217 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 276

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N                               +VSWN+MI+ YA       A+    +M
Sbjct: 277 RN-------------------------------IVSWNAMIANYALNRLPLEAIRFVIQM 305

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G  P+  TF+ +L   +       GK+IH   +R GL+ S++ + NSLIDMY K G 
Sbjct: 306 QETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLT-SDLFVSNSLIDMYAKCGC 364

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L+ A  VF N    D +S+N LI G   +     +L+ F  MR  G  PD  +   VI+A
Sbjct: 365 LHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISA 423

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L +GK+V  ++++    S+  V ++ +D ++KC R++ + RLF Q+   D A  
Sbjct: 424 CANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASW 483

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N MI  YG  G  E A+ +F+ M  + ++    +   VLS+      VE G Q+ S  + 
Sbjct: 484 NTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLA 543

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
              +   +  + ++++  + G ++ + ++  +L
Sbjct: 544 QRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL 576



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 184/376 (48%), Gaps = 7/376 (1%)

Query: 138 MQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           M  +GV+    TF  +L   S +   C G ++HG + + G   ++V +GN+L+ +YG  G
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFD-TDVYVGNTLLMLYGNCG 59

Query: 195 VLYYAFGVFLNMEELDIISWNSLIS-GCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            L  A  +F  M E D++SWN++I     N  Y E     F+ +  S   P+  ++  ++
Sbjct: 60  FLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
                L + +  +++   SVKVG  S     +A +D + KC  ++   ++F +    +  
Sbjct: 120 PISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV 179

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMA 372
             N +I+     G    AL  F++M+    +P   T+S +L   + +   + G + H  +
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           ++ G +++  +A+SL++MYAK+G    ++ IF  LD+R++VSWN ++     N    E +
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 299

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
               ++ E G  P+ +T   VL AC   GF+  G  +  AM    G+         +ID+
Sbjct: 300 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLFVSNSLIDM 358

Query: 493 LCQAGQLGKAIDITST 508
             + G L  A ++ +T
Sbjct: 359 YAKCGCLHSARNVFNT 374


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 267/477 (55%), Gaps = 3/477 (0%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +S+ +S  +   IH  +I+S L+ S+  +G+ L+ MY KLG    A  +F  M   D++S
Sbjct: 129 ISSCTSVSYCSAIHARVIKS-LNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVS 187

Query: 214 WNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           WNSL+SG    GY    L+ F  MR  SG  P+E T+  V++AC  +  LD+GK +  + 
Sbjct: 188 WNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVV 247

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK+G    + V+++ I+++ K   L+ + +LFE++        N M+  +   G+ E  +
Sbjct: 248 VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 307

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF LM R  I P + T+  +L +     +       H+   + GF+++ ++A++L+ +Y
Sbjct: 308 DLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLY 367

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +++S +IF ++  RD ++W  ++ G   +    E + +F+ +++EG+  D +T  
Sbjct: 368 AKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFT 427

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L AC++ G V++G   F  M E Y V P  +HY+C++DLL ++G+L  A ++  +MP 
Sbjct: 428 HLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPM 487

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W ++L A  +YG+V+L + VAE+++ L       Y +L+  Y+  G W    +V
Sbjct: 488 EPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKV 547

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + +M++  + +  GCS+I   N+I+ F  G+  H    +I+  L  L  ++ + GC 
Sbjct: 548 RALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCA 604



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 190/387 (49%), Gaps = 44/387 (11%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S  +   IH  + K    +  ++G+R + +Y + G  +D  +LFDE+P K+ +SW  
Sbjct: 131 SCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSW-- 188

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRP 145
                                        NS++SG +  GY    L  F +M+ + G +P
Sbjct: 189 -----------------------------NSLMSGLSGRGYLGACLNAFCRMRTESGRQP 219

Query: 146 SGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           +  T   LLS VS+         GK +HG +++ G+S    V+ NSLI+MYGKLG L  A
Sbjct: 220 NEVT---LLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDAA 275

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
             +F  M    ++SWNS++    ++GY E  +D F  M+ +G +PD+ T+  ++ ACT  
Sbjct: 276 SQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDT 335

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
               + + + A   + GF ++ I+ +A ++L++K  RL  S  +FE++   D      M+
Sbjct: 336 GLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAML 395

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGF 377
           + Y  +  G  A++LF LM++E +     T + +LS+      VE G + F  M+     
Sbjct: 396 AGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRV 455

Query: 378 DSNAVVASSLMEMYAKTGSIDSSTEIF 404
           +      S ++++  ++G ++ + E+ 
Sbjct: 456 EPRLDHYSCMVDLLGRSGRLEDAYELI 482



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 44/257 (17%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           +K+A +N    +  + L+  C        A++IH ++ + GFNA   +    L+LY++ G
Sbjct: 313 MKRAGINPDQATMVA-LLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLG 371

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                           L+ +  +F+EI + D ++W +M++GYA 
Sbjct: 372 -------------------------------RLNASEDIFEEIKDRDRIAWTAMLAGYAV 400

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGK---QIHGSMIRSGLSLS 178
                 A+++F  M  +GV     TF+ LLS  S +     GK   +I   + R    L 
Sbjct: 401 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 460

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSM 237
           +    + ++D+ G+ G L  A+ +  +M  E     W +L+  C    YG + L +  + 
Sbjct: 461 HY---SCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGAC--RVYGNVELGKEVAE 515

Query: 238 RYSGYSPDEYTISIVIN 254
           +     P ++   I+++
Sbjct: 516 QLLSLDPSDHRNYIMLS 532


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/576 (28%), Positives = 297/576 (51%), Gaps = 47/576 (8%)

Query: 50  TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE 109
            Y  N  +   SR G  D   +LFDE+  K+ ++WN  L    ++  L  +  +F  +P 
Sbjct: 29  VYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPL 88

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGS 169
            +VVSWNS+I   A+C  +D   + F  +     + +  +++ ++S ++    G+     
Sbjct: 89  RNVVSWNSII---AACVQNDNLQDAFRYLAAAPEKNAA-SYNAIISGLARC--GRMKDAQ 142

Query: 170 MIRSGLSLSNVVLGNSLIDMYGKL-GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE 228
            +   +   NVV   +++D Y ++ G +  A  +F  M   + +SW  +I+G   +G  E
Sbjct: 143 RLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCE 202

Query: 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI 288
            A + F  M      P +                                 N +  +A I
Sbjct: 203 EAWEVFVRM------PQK---------------------------------NDVARTAMI 223

Query: 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348
             F K  R+ED+  LF+++   D    N++++ Y + G GE AL LF  M+R  ++P + 
Sbjct: 224 TGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDL 283

Query: 349 T-LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           T +S  ++   +  +E GS+ H++ IK GFDS+  V ++L+ +++K G I  S  +F ++
Sbjct: 284 TFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQI 343

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467
              DLVSWNTI+    Q+G   +    F++++   + PD IT  ++L AC   G V++ M
Sbjct: 344 SHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESM 403

Query: 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            +FS M + YG+ P  EHYAC++D++ +AGQL +A  I + MPF+   SIW ++L A ++
Sbjct: 404 NLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSV 463

Query: 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587
           + +V+L E  A R+++L   +   Y +L+  YA  G+W+ + R++ +M++ G+ K T  S
Sbjct: 464 HLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYS 523

Query: 588 WIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           W+ I N+ + F  G+  H     I++ LR +T  M+
Sbjct: 524 WLQIGNKTHYFVGGDPSHPNINDIHVALRRITLHMK 559



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 150/315 (47%), Gaps = 36/315 (11%)

Query: 164 KQIHGSMIRSGL--SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
           +Q H   + + L  S  +V   N  I    + G +  A  +F  M   D+++WNS++S  
Sbjct: 11  RQRHSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAY 70

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISI--VINACTKLRNLDKGKQVFALSVKVGFLS 279
           + +G  + +   F+SM      P    +S   +I AC +  NL    +  A + +     
Sbjct: 71  WQNGLLQRSKALFHSM------PLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPE----K 120

Query: 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY--GFGEVALELFQL 337
           N+   +A I   ++C R++D+ RLFE +   +      M+  Y R   G G  A  LF+ 
Sbjct: 121 NAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGR-ARALFEA 179

Query: 338 MLREDIRPTEFTLSCVLSSIPIPPVEHG------SQFHSMAIKSGFDSNAVVASSLMEMY 391
           M R +      ++S V+    +  VE+G        F  M  K     N V  ++++  +
Sbjct: 180 MPRRN------SVSWVVMINGL--VENGLCEEAWEVFVRMPQK-----NDVARTAMITGF 226

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            K G ++ + ++F ++  RDLVSWN IM G  QNGR  E L++F +++  G+ PD +T  
Sbjct: 227 CKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFV 286

Query: 452 AVLLACNYGGFVDKG 466
           +V +AC     +++G
Sbjct: 287 SVFIACASLASLEEG 301



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 51/241 (21%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           L++ S  I  C S  S +     H  L K GF++   + N  + ++S+ G   D   +F 
Sbjct: 283 LTFVSVFI-ACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFG 341

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
           +I   + +SW                               N++I+ +A  G  D A   
Sbjct: 342 QISHPDLVSW-------------------------------NTIIAAFAQHGLYDKARSY 370

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS------LID 188
           F +M    V+P G TF   LS +S+ C   +++ SM    L + N  +         L+D
Sbjct: 371 FDQMVTVSVQPDGITF---LSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVD 427

Query: 189 MYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC---FNSGYGELA------LDQFYSMR 238
           +  + G L  A  +   M  + D   W ++++ C    N   GELA      LD F S  
Sbjct: 428 VMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGA 487

Query: 239 Y 239
           Y
Sbjct: 488 Y 488


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 262/479 (54%), Gaps = 10/479 (2%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
           A+ +   M+ +GV     T+S L+       +   GK++H  +  +G       L N LI
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYH-PKTFLTNILI 327

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           +MY K  +L  A  +F  M E +++SW ++IS   N+   + A+     M   G  P+ +
Sbjct: 328 NMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMF 387

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S V+ AC +L +L   KQ+ +  +KVG  S+  V SA ID++SK   L +++++F ++
Sbjct: 388 TFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGS 366
              D  V N +I+ + ++  G+ AL L++ M R      + TL+ VL +   +  +E G 
Sbjct: 445 MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGR 504

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q H   +K  FD + ++ ++L++MY K GS++ +  IF ++ K+D++SW+T++ GL QNG
Sbjct: 505 QAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNG 562

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
            + E L++FE +  +G  P+ IT+  VL AC++ G V++G   F +M   YG+ PG EHY
Sbjct: 563 FSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHY 622

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL +A +L   + +   M  +P    W ++L A     +V L    A+ ++ L  
Sbjct: 623 GCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDP 682

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
                Y LL+  YA+  RW  +  V++ M+K GI K  GCSWI +  +I+ F  G+  H
Sbjct: 683 QDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSH 741



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 219/448 (48%), Gaps = 42/448 (9%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           S++Y S+LI  CL+  +    K +H H+F  G++  T+L N  +++Y +F          
Sbjct: 285 SITY-SELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNL-------- 335

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
                                  L+ A  +FD++PE +VVSW +MIS Y++   +D A+ 
Sbjct: 336 -----------------------LEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMR 372

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
           + + M   GV P+ FTFS +L         KQ+H  +++ GL  S+V + ++LID+Y K+
Sbjct: 373 LLAFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLE-SDVFVRSALIDVYSKM 431

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G L  A  VF  M   D + WNS+I+       G+ AL  + SMR  G+  D+ T++ V+
Sbjct: 432 GELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVL 491

Query: 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA 313
            ACT L  L+ G+Q     +K  F  + I+ +A +D++ KC  LED+  +F ++ + D  
Sbjct: 492 RACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVI 549

Query: 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSM 371
             + MI+   + GF   AL LF+ M  +  +P   T+  VL +     +  E    F SM
Sbjct: 550 SWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSM 609

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAE 430
               G D        ++++  +   +D   ++  +++ + D+V+W T++       RA +
Sbjct: 610 NNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDAC----RARQ 665

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACN 458
            +D+     +E L  D     A +L  N
Sbjct: 666 NVDLATYAAKEILKLDPQDTGAYVLLSN 693



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 43/216 (19%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           A  S  + ++  C S    +  +  H H+ K  F+    L N  LD+Y + G+ +D   +
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFI 539

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           F+ + +K+ ISW                               ++MI+G A  G+S  AL
Sbjct: 540 FNRMAKKDVISW-------------------------------STMIAGLAQNGFSMEAL 568

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGS--MIRSGLSLSNVVLGNS----L 186
            +F  M++QG +P+  T   +L  + +  H   ++      RS  +L  +  G      +
Sbjct: 569 NLFESMKVQGPKPNHIT---ILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCM 625

Query: 187 IDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           +D+ G+   L     +   M  E D+++W +L+  C
Sbjct: 626 LDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDAC 661


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 174/598 (29%), Positives = 305/598 (51%), Gaps = 49/598 (8%)

Query: 3   SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR 62
           SY+K+        ++ S +   C S    DF   +H  + K  F ++ ++ N  +D+Y++
Sbjct: 399 SYMKRHGPQPDEFTFTS-IFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAK 457

Query: 63  FGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122
            G                                L  A K F+ +   D VSWN++I GY
Sbjct: 458 SGA-------------------------------LKEARKQFEFMKIHDNVSWNAIIVGY 486

Query: 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGL 175
               Y+D A  MF +M   GV P      + L+++ SAC        G+Q H  +++ GL
Sbjct: 487 VQEEYNDEAFFMFRRMVSNGVLPD----EVSLASIVSACANVKEFKQGQQCHCLLVKVGL 542

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
             S    G+SLIDMY K GV+  A  VF +M   +++S N+LI+G +   + E A+  F 
Sbjct: 543 DTSTCA-GSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAG-YTMSHLEEAIHLFQ 600

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS-IVLSATIDLFSKC 294
            ++  G  P E T + +++ C     L+ G+Q+    +K GFLS+S +V  + + ++   
Sbjct: 601 EIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNS 660

Query: 295 NRLEDSVRLFEQLDRWDYAVI-NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
            R  DS  LF +L      V+   +IS Y +    E AL+ +Q M  ++I P + T + V
Sbjct: 661 QRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASV 720

Query: 354 LSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD- 411
           L +   +  ++ G + HS+   +GF+ + +  SSL++MYAK G +  S ++F ++ +R+ 
Sbjct: 721 LRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNS 780

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
           ++SWN++++GL +NG A E L++F+++ ++ + PD +T   VL AC++ G V +G  VF 
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFD 840

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            M   Y + P  +H  C++D+L + G L +A +  + +  +    +W ++L A   +GD 
Sbjct: 841 LMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDE 900

Query: 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589
              +  A ++M+L+  S   Y LL+  YA    W     +++ M+  G+ K+ G SWI
Sbjct: 901 VRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWI 958



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/550 (24%), Positives = 271/550 (49%), Gaps = 47/550 (8%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C   +  ++ K +H  +FK+GF   ++     +D+Y++     D   +FD    
Sbjct: 146 AMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALN 205

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFD--------------------------------- 105
            + +SW   + G ++      A+KVFD                                 
Sbjct: 206 LDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKL 265

Query: 106 --EIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC-- 161
             +IP P+VV+WN MISG+A  G+++ A+  F +++  G++ +  +   +LS ++S    
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 162 -HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
            +G  +H   I+ GL   NV +G++L++MY K   +  A  VF ++ E +I+ WN+++ G
Sbjct: 326 NYGSMVHAQAIKEGLD-DNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGG 384

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
              +G  +  ++ F  M+  G  PDE+T + + +AC  L  LD G Q+  + +K  F SN
Sbjct: 385 FAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSN 444

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V +A +D+++K   L+++ + FE +   D    N +I  Y +  + + A  +F+ M+ 
Sbjct: 445 LFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVS 504

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
             + P E +L+ ++S+   +   + G Q H + +K G D++    SSL++MY K G + +
Sbjct: 505 NGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459
           + ++F  +  R++VS N ++ G T +    E + +F+E+   GL P  +T A +L  C+ 
Sbjct: 565 ARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDG 623

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC---QAGQLGKAIDITSTMPFQPGCS 516
              ++ G  +   +  ++G +   E     + LLC    + +   +  + S + +  G  
Sbjct: 624 AFMLNLGRQIHGQVM-KWGFLSSSE--MVCVSLLCMYMNSQRFADSETLFSELQYPKGLV 680

Query: 517 IWESILRASA 526
           +W +++   A
Sbjct: 681 VWTALISGYA 690



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 203/450 (45%), Gaps = 71/450 (15%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
            ++   AK IH    K+G      LGN  +DLY + G                       
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCG----------------------- 90

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                   N+D A K F  + + DV +WNS++S Y   G     ++ F  M   GVRP+ 
Sbjct: 91  --------NVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNE 142

Query: 148 FTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           FTF+++LS  S      +GKQ+H  + + G    +   G  LIDMY K   L  A  VF 
Sbjct: 143 FTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQG-GLIDMYAKCRNLRDARLVFD 201

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
               LD +SW +LI+G    G+   A+  F  M+  G+ PD+  +  VINA   L     
Sbjct: 202 GALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVAL----- 256

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
                                          RL D+ +LF Q+   +    NVMIS + +
Sbjct: 257 ------------------------------GRLADARKLFTQIPNPNVVAWNVMISGHAK 286

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
            GF E A+  F  + +  ++ T  +L  VLS+I  +  + +GS  H+ AIK G D N  V
Sbjct: 287 RGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYV 346

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            S+L+ MYAK   +D++ ++F  L +R++V WN ++ G  QNG A E ++ F  +   G 
Sbjct: 347 GSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGP 406

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
            PD  T  ++  AC    ++D G  + + M
Sbjct: 407 QPDEFTFTSIFSACASLHYLDFGGQLHTVM 436



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 265/581 (45%), Gaps = 42/581 (7%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           LKK  + KA+ S    ++    S    ++   +H    K G + + Y+G+  +++Y++  
Sbjct: 300 LKKTGL-KATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCS 358

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
             D   Q+F+ + ++N + W                               N+M+ G+A 
Sbjct: 359 KMDAAKQVFNSLGERNIVLW-------------------------------NAMLGGFAQ 387

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVV 181
            G +   +E FS M+  G +P  FTF+ + S  +S  +   G Q+H  MI++  + SN+ 
Sbjct: 388 NGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFT-SNLF 446

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           + N+L+DMY K G L  A   F  M+  D +SWN++I G     Y + A   F  M  +G
Sbjct: 447 VANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNG 506

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
             PDE +++ +++AC  ++   +G+Q   L VKVG  +++   S+ ID++ KC  +  + 
Sbjct: 507 VLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAAR 566

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP- 360
            +F  +   +   IN +I+ Y      E A+ LFQ +    ++PTE T + +L       
Sbjct: 567 DVFYSMPYRNVVSINALIAGYTMSHLEE-AIHLFQEIQMVGLKPTEVTFAGLLDGCDGAF 625

Query: 361 PVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTI 418
            +  G Q H   +K GF  S+ +V  SL+ MY  +     S  +F +L   + LV W  +
Sbjct: 626 MLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTAL 685

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478
           + G  Q     + L  ++ +  + + PD+ T A+VL AC     +  G  V S +    G
Sbjct: 686 ISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHT-G 744

Query: 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538
               E   + +ID+  + G +  ++ +   MP +     W S++   A  G  +    + 
Sbjct: 745 FNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIF 804

Query: 539 ERMMDLQ-LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578
           ++M     +P  + +  +  A +  GR     +V  +M  N
Sbjct: 805 KQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNN 845


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 163/541 (30%), Positives = 279/541 (51%), Gaps = 27/541 (4%)

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHG-----KQIHG 168
           SW   I   AS G   +A+ +F +M+      S    S+  +  S A  G       +H 
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 390

Query: 169 SMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG--------------------VFLNMEE 208
             IRSG S ++    N+L+++  KL   ++ FG                    VF  M E
Sbjct: 391 LAIRSG-SFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 449

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
            D +SWN+LI GC      + AL     M   G+ PD +T+S V+    +  ++ +G  V
Sbjct: 450 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 509

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
              ++K GF ++  V S+ ID+++ C +++ S+++F+     D  + N M++ Y + G  
Sbjct: 510 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 569

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           E AL +F+ ML+  +RP   T S ++ +   +  +  G Q H+  I++ F+ N  ++SSL
Sbjct: 570 EEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSL 629

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           ++MY K G++D +  +F  +   D+VSW  ++MG   +G   E   +FE +    + P+ 
Sbjct: 630 IDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNH 689

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           IT  AVL AC++ G VD G   F++M  +YG +P  EH A + D L +AG L +A +  S
Sbjct: 690 ITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFIS 749

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            M  +P  S+W ++LRA  ++ +  L E VA+++ +L+  S   + +L+  Y+  GRW  
Sbjct: 750 EMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNE 809

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
             +++K MR  G+ K   CSWI +KN+++ F A +  H    +I   L + + +M  +G 
Sbjct: 810 AAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGY 869

Query: 628 V 628
           V
Sbjct: 870 V 870



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 166/336 (49%), Gaps = 7/336 (2%)

Query: 90  GLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT 149
           G L+S   ++  KVFDE+ E D VSWN++I G A       AL M  +M   G  P  FT
Sbjct: 430 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFT 489

Query: 150 FSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
            S +L   +       G  +HG  I++G   ++V +G+SLIDMY     + Y+  VF + 
Sbjct: 490 LSTVLPIFAECADIKRGMVVHGYAIKNGFD-NDVFVGSSLIDMYANCTQMDYSMKVFDSF 548

Query: 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGK 266
            + D + WNS+++G   +G  E AL  F  M  +G  P   T S +I A   L  L  GK
Sbjct: 549 SDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGK 608

Query: 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG 326
           Q+ A  ++  F  N  + S+ ID++ KC  ++ + R+F  +   D      MI  Y  +G
Sbjct: 609 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 668

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVA 384
               A  LF+ M   +++P   T   VL++      V++G + F+SM+ + GF  +    
Sbjct: 669 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 728

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIM 419
           ++L +   + G +D +     ++  +   S W+T++
Sbjct: 729 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLL 764



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 36/275 (13%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +HG+  K GF+   ++G+  +D+Y+     D  +++FD     + + WN           
Sbjct: 509 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWN----------- 557

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
                               SM++GYA  G  + AL +F +M   GVRP   TFS L+  
Sbjct: 558 --------------------SMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPA 597

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              +S    GKQ+H  +IR+  +  N+ + +SLIDMY K G +  A  VF  ++  DI+S
Sbjct: 598 FGNLSLLRLGKQLHAYLIRARFN-DNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 656

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALS 272
           W ++I G    G    A   F  M      P+  T   V+ AC+    +D G + F ++S
Sbjct: 657 WTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMS 716

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
            + GF+ +    +A  D   +   L+++     ++
Sbjct: 717 NQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEM 751



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 35/207 (16%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S LI    +       K +H +L +  FN + ++ +  +D+Y + G              
Sbjct: 592 SSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCG-------------- 637

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                            N+D A +VF+ I  PD+VSW +MI GYA  G +  A  +F +M
Sbjct: 638 -----------------NVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 680

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +L  V+P+  TF  +L+  S A    +G +   SM      + ++    +L D  G+ G 
Sbjct: 681 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 740

Query: 196 LYYAFGVFLNMEELDIIS-WNSLISGC 221
           L  A+     M+     S W++L+  C
Sbjct: 741 LDEAYNFISEMKIKPTSSVWSTLLRAC 767


>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 757

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 184/615 (29%), Positives = 312/615 (50%), Gaps = 50/615 (8%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C S ++      +HG+L + G  A   + N  L +Y+      DV           
Sbjct: 171 LVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYA------DV----------- 213

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-Q 139
                          ++D A  +FDE+PE DV+SW++MI GY         L++F KM  
Sbjct: 214 ---------------DMDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLS 258

Query: 140 LQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGK 192
              + P G    ++L +V  AC        G+ +HG  I  GL  S++ + NSLIDMY K
Sbjct: 259 TSRITPDG----VILVSVLKACANSVNITMGRLVHGLTICRGLD-SDLFVKNSLIDMYSK 313

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
                 AF VF  M   + +SWNSL+SG   N  Y E AL   YSMR  G   DE T+  
Sbjct: 314 CKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSE-ALLLVYSMRTEGIEADEVTLVN 372

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            +  C    +    K V   +++ G  SN IVL++ ID ++KCN +E +  +F +  R D
Sbjct: 373 CLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRD 432

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HS 370
             + + MI+ +   G  + A+ +FQ M      P   T+  +L +  +      S + H 
Sbjct: 433 VVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQACSVSAELKRSMWAHG 492

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
            AI+ G  +   V +++++MY+K G I++S + F ++ ++++++W+T++     NG A E
Sbjct: 493 AAIRRGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHE 552

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490
            L +  ++    + P+ +T  +VL AC++GG V+ G+ VF +M +++GV P  EHY+C++
Sbjct: 553 ALALLAQMKSHEIKPNALTYLSVLTACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMV 612

Query: 491 DLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548
           D+L +AG+L  A+++   MP  F+ G S+W ++L A   Y    L E    ++++L+  +
Sbjct: 613 DMLSRAGKLDDAMELIRMMPETFRAGASVWGALLSACRTYRSSTLGEKAVYQVLELEPLN 672

Query: 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGG 608
              Y L +  YA  G W+   R+K + R+ G+  V G S + + ++ + F AG+      
Sbjct: 673 LAGYLLASSMYASDGLWDNAARMKLLARERGVRAVAGYSIVHVDSKAHKFVAGDKSCSQA 732

Query: 609 QKIYLVLRLLTWEME 623
             I+ +L  L + M+
Sbjct: 733 GNIHHMLNQLHFCMK 747



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 140/565 (24%), Positives = 254/565 (44%), Gaps = 42/565 (7%)

Query: 24  RCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           +  S+ S+   K +H  L K  F++ T +GN  L+ Y + G  D  + +FD +  ++ +S
Sbjct: 73  KACSYLSYIDGKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVS 132

Query: 84  WNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGV 143
           WN+ + G L                      + +++ G          L  F   ++ G 
Sbjct: 133 WNVLIHGCL---------------------DYGALVEG----------LWQFINARVAGF 161

Query: 144 RPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
            P+  T  +L+    S      G Q+HG +I+SGL  S  V  NS + MY  +  +  A 
Sbjct: 162 EPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSV-QNSFLCMYADVD-MDCAR 219

Query: 201 GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTISIVINACTKL 259
            +F  M E D+ISW+++I G       ++ L  F  M   S  +PD   +  V+ AC   
Sbjct: 220 ILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANS 279

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
            N+  G+ V  L++  G  S+  V ++ ID++SKC     +  +F ++ R +    N ++
Sbjct: 280 VNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLL 339

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFD 378
           S          AL L   M  E I   E TL +C+          H    H   I+ G +
Sbjct: 340 SGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCE 399

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438
           SN +V +SL++ YAK   I+ + E+F +  +RD+V W+T++ G    G+  E + VF+++
Sbjct: 400 SNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKM 459

Query: 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498
            E    P+ +T+  +L AC+    + + M    A     G+         I+D+  + G+
Sbjct: 460 NEGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRR-GLAAEVAVGTAIVDMYSKCGE 518

Query: 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLTQ 557
           +  +    + +P Q     W +++ A  + G       +  +M   ++ P+ L Y  +  
Sbjct: 519 IEASRKAFNQIP-QKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLT 577

Query: 558 AYAMRGRWEAIVRV-KKVMRKNGIN 581
           A +  G  E  + V K +++ +G++
Sbjct: 578 ACSHGGLVEMGLSVFKSMIQDHGVD 602



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 146/351 (41%), Gaps = 47/351 (13%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           ++ +L  C Q+   C  F      K +H    + G  ++  + N  +D Y++    +   
Sbjct: 366 DEVTLVNCLQI---CKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLIELAW 422

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           ++F    +++ + W+  + G       D A+ VF ++ E   V                 
Sbjct: 423 EVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEV----------------- 465

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQ---IHGSMIRSGLSLSNVVLGNSLI 187
                         P+  T   LL   S +   K+    HG+ IR GL+ + V +G +++
Sbjct: 466 --------------PNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLA-AEVAVGTAIV 510

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G +  +   F  + + +II+W+++I+    +G    AL     M+     P+  
Sbjct: 511 DMYSKCGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNAL 570

Query: 248 TISIVINACTKLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDS---VRL 303
           T   V+ AC+    ++ G  VF   ++  G        S  +D+ S+  +L+D+   +R+
Sbjct: 571 TYLSVLTACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRM 630

Query: 304 FEQLDRWDYAVINVMIS---TYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
             +  R   +V   ++S   TY     GE A  ++Q++  E +    + L+
Sbjct: 631 MPETFRAGASVWGALLSACRTYRSSTLGEKA--VYQVLELEPLNLAGYLLA 679


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/598 (28%), Positives = 302/598 (50%), Gaps = 43/598 (7%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           D A+++   +   G N +T +    +  Y+  G  +D L+LF E+P K+ ISWN  L+G 
Sbjct: 67  DEARSLFNKMSSPGVNLYTMM----IGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGC 122

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           LK  +L  A  +FD++ E +VVSW ++I+G    G  + A  +F  M  +          
Sbjct: 123 LKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTK---------- 172

Query: 152 ILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
                                      +V   NS++  +   G +  A  +F  M   ++
Sbjct: 173 ---------------------------DVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNV 205

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           ISW S+I G  ++G    AL  F+ M  S +     T++  + AC  +     G Q+  L
Sbjct: 206 ISWTSVIGGLDHNGRSFEALVVFHKMLAS-FKATSSTLACALTACANICTPFIGVQIHGL 264

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
            VK G+  N  + ++ I  ++ C  ++++  +F      +  V   +++ YG       A
Sbjct: 265 IVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDA 324

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
           L++F+ M+R  + P + +L+  L+S   +  V+ G + H++A K G +S+  V++SL+ M
Sbjct: 325 LQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVM 384

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           Y K G I+    +F ++ ++++VSWN+I++G  Q+G     L +F +++   + PD ITL
Sbjct: 385 YTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITL 444

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           A +L AC + G + KG   F    + +G+    EHY+ ++DLL + GQL +A  +   MP
Sbjct: 445 AGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMP 504

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570
            +    +W ++L +S  + +V + E  A+ ++DLQ      Y+LL+  YA  G+W  + +
Sbjct: 505 GKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSK 564

Query: 571 VKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           ++K M+  GI K  G SWI IK   + F +G+  H   +KIY  L  L  ++++ G V
Sbjct: 565 IRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYV 622



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 152/343 (44%), Gaps = 47/343 (13%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           KA+ S  +  +  C +  +      IHG + K G+  + Y+    +  Y+     D+   
Sbjct: 236 KATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASS 295

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA-SCGYSDY 130
           +F++   +N                               VV W ++++GY  +C ++D 
Sbjct: 296 IFNDNVSRN-------------------------------VVVWTALLTGYGLNCRHTD- 323

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGN 184
           AL++F  M    V P+    S L S ++S C       G+++H    + GL  S++ + N
Sbjct: 324 ALQVFKGMMRMSVLPNQ---SSLTSALNSCCGLEAVDRGREVHAVAHKLGLE-SDIFVSN 379

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           SL+ MY K G +     VF  M   +++SWNS+I GC   G+G  AL  F  M  +   P
Sbjct: 380 SLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDP 439

Query: 245 DEYTISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303
           DE T++ +++AC     L KG+  F       G    +   S+ +DL  +  +LE++  L
Sbjct: 440 DEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEAL 499

Query: 304 FEQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
              +  + +Y V   ++S+   +    VA    + +L  D++P
Sbjct: 500 IHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVL--DLQP 540



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 46/221 (20%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           N++SL+     ++ C   ++ D  + +H    KLG  +  ++ N  + +Y++ G  +D +
Sbjct: 339 NQSSLT---SALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGI 395

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +F  + +KN +S                               WNS+I G A  G+  +
Sbjct: 396 AVFTRMSRKNVVS-------------------------------WNSIIVGCAQHGFGRW 424

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSA-------CHGKQIHGSMIRSGLSLSNVVLG 183
           AL +F++M    V P   T + LLS    +       C  K    +    G+ ++N    
Sbjct: 425 ALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNF---GIEMTNEHY- 480

Query: 184 NSLIDMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGCFN 223
           +S++D+ G+ G L  A  +   M  + + + W +L+S   N
Sbjct: 481 SSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSIN 521


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/466 (30%), Positives = 257/466 (55%), Gaps = 2/466 (0%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           KQ+H  +  +G+ + ++++ N L+ M  K   L  A  +F  MEE D +SW+ +I G   
Sbjct: 20  KQVHAQVTTTGI-IHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVK 78

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +G  E     F  +  +G  PD +++  VI AC     L  G+ + +  +K G   ++ V
Sbjct: 79  NGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFV 138

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            S  +D+++KC  ++++ +LF+++ + D     VMI+ Y   G    +  LF  M R+  
Sbjct: 139 CSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGF 198

Query: 344 RPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P +  +  ++++   +  +      H       +  +  + +++++MYAK GSIDSS E
Sbjct: 199 VPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSRE 258

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           IF ++++++++SW+ ++     +G+  E L++F  +L  G+ P+RIT  ++L AC++ G 
Sbjct: 259 IFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGL 318

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           VD G+ +FS M   YGV P  +HY C++DLL +AG+L +A+ +   M  +    IW + L
Sbjct: 319 VDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFL 378

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A  I+  V L E  A+ ++ LQ  +P  Y LL+  YA  GRW+ + +++ +M K  + K
Sbjct: 379 GACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKK 438

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + G +WI + N IY F AG+  H    +IY +L+ L+ ++E  G V
Sbjct: 439 IPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYV 484



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 137/296 (46%), Gaps = 44/296 (14%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C         + IH  + K G +   ++ +  +D+Y++ G  D+  QLFD +P+K 
Sbjct: 107 VIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKK- 165

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                         D+V+   MI+GYA CG  + +  +F +M+ 
Sbjct: 166 ------------------------------DLVTRTVMIAGYAECGKPNESWVLFDQMRR 195

Query: 141 QGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            G  P      + + T+ +AC         + +H  +     SL +V LG ++IDMY K 
Sbjct: 196 DGFVPD----KVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL-DVELGTAMIDMYAKC 250

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  +  +F  ME+ ++ISW+++I      G G  AL+ F+ M  SG  P+  T   ++
Sbjct: 251 GSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLL 310

Query: 254 NACTKLRNLDKGKQVFAL-SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            AC+    +D G Q+F+L SV  G   +    +  +DL  +  RL+ ++RL E ++
Sbjct: 311 YACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENME 366



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 139/278 (50%), Gaps = 3/278 (1%)

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I+   K RN+ + KQV A     G + + IV +  + + +K   L  +  LF +++  D 
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDP 66

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSM 371
              +VMI  + + G  E   + F+ ++R   +P  F+L  V+ +      +  G   HS 
Sbjct: 67  VSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
            +K+G   +  V S+L++MYAK G ID++ ++F ++ K+DLV+   ++ G  + G+  E+
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNES 186

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491
             +F+++  +G  PD++ +  ++ AC   G ++K  LV   +      +  E   A +ID
Sbjct: 187 WVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTA-MID 245

Query: 492 LLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           +  + G +  + +I   M  Q     W +++ A   +G
Sbjct: 246 MYAKCGSIDSSREIFDRME-QKNVISWSAMIGAYGYHG 282



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 51/213 (23%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +++ C    + + A+ +H ++    ++    LG   +D+Y++ G+               
Sbjct: 208 IVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGS--------------- 252

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           +D++ ++FD + + +V+SW++MI  Y   G    ALE+F  M  
Sbjct: 253 ----------------IDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLN 296

Query: 141 QGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGL---SLSNVVLG--------NSLIDM 189
            G+ P+  TF  LL   S        H  ++  GL   SL +V  G          ++D+
Sbjct: 297 SGIIPNRITFISLLYACS--------HAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDL 348

Query: 190 YGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
            G+ G L  A  +  NME E D   W + +  C
Sbjct: 349 LGRAGRLDQALRLIENMEVEKDEGIWCAFLGAC 381


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 267/477 (55%), Gaps = 3/477 (0%)

Query: 154 LSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
           +S+ +S  +   IH  +I+S L+ S+  +G+ L+ MY KLG    A  +F  M   D++S
Sbjct: 149 ISSCTSVSYCSAIHARVIKS-LNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVS 207

Query: 214 WNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           WNSL+SG    GY    L+ F  MR  SG  P+E T+  V++AC  +  LD+GK +  + 
Sbjct: 208 WNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVV 267

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK+G    + V+++ I+++ K   L+ + +LFE++        N M+  +   G+ E  +
Sbjct: 268 VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGM 327

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           +LF LM R  I P + T+  +L +     +       H+   + GF+++ ++A++L+ +Y
Sbjct: 328 DLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLY 387

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G +++S +IF ++  RD ++W  ++ G   +    E + +F+ +++EG+  D +T  
Sbjct: 388 AKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFT 447

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
            +L AC++ G V++G   F  M E Y V P  +HY+C++DLL ++G+L  A ++  +MP 
Sbjct: 448 HLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPM 507

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +P   +W ++L A  +YG+V+L + VAE+++ L       Y +L+  Y+  G W    +V
Sbjct: 508 EPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKV 567

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           + +M++  + +  GCS+I   N+I+ F  G+  H    +I+  L  L  ++ + GC 
Sbjct: 568 RXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCA 624



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 170/338 (50%), Gaps = 44/338 (13%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S  S  +   IH  + K    +  ++G+R + +Y + G  +D  +LFDE+P ++ +SW  
Sbjct: 151 SCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSW-- 208

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ-GVRP 145
                                        NS++SG +  GY    L  F +M+ + G +P
Sbjct: 209 -----------------------------NSLMSGLSGRGYLGACLNAFCRMRTESGRQP 239

Query: 146 SGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           +  T   LLS V SAC        GK +HG +++ G+S    V+ NSLI+MYGKLG L  
Sbjct: 240 NEVT---LLSVV-SACAXMGALDEGKSLHGVVVKLGMSGKAKVV-NSLINMYGKLGFLDA 294

Query: 199 AFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258
           A  +F  M    ++SWNS++    ++GY E  +D F  M+ +G +PD+ T+  ++ ACT 
Sbjct: 295 ASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTD 354

Query: 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318
                + + + A   + GF ++ I+ +A ++L++K  RL  S  +FE++   D      M
Sbjct: 355 TGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAM 414

Query: 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           ++ Y  +  G  A++LF LM++E +     T + +LS+
Sbjct: 415 LAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSA 452


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/552 (30%), Positives = 271/552 (49%), Gaps = 65/552 (11%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           K +H    KLGF    +L N  LD+Y++ G                              
Sbjct: 269 KQMHTLSVKLGFERDLHLCNSLLDMYAKIG------------------------------ 298

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
            ++D+A KVF  +    VVSWN MI+GY +   S+ A E   +MQ  G  P   T+  +L
Sbjct: 299 -DMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINML 357

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +    AC         ++SG    +V  G  + D                 M    + SW
Sbjct: 358 T----AC---------VKSG----DVRTGRQIFDC----------------MPCPSLTSW 384

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
           N+++SG   +     A++ F  M++    PD  T+++++++C +L  L+ GK+V A S K
Sbjct: 385 NAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQK 444

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
            GF  +  V S+ I+++SKC ++E S  +F +L   D    N M++ +     G+ AL  
Sbjct: 445 FGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSF 504

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
           F+ M +    P+EF+ + V+SS   +  +  G QFH+  +K GF  +  V SSL+EMY K
Sbjct: 505 FKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCK 564

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G ++ +   F  +  R+ V+WN ++ G  QNG     L ++ +++  G  PD IT  AV
Sbjct: 565 CGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAV 624

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L AC++   VD+G+ +F+AM ++YGV+P   HY CIID L +AG+  +   I   MP + 
Sbjct: 625 LTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKD 684

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
              +WE +L +  I+ ++ L +  AE +  L   +   Y LL   Y+  G+W+    V+ 
Sbjct: 685 DAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSASYVLLANMYSSLGKWDDAHVVRD 744

Query: 574 VMRKNGINKVTG 585
           +M  N + K  G
Sbjct: 745 LMSHNQVRKDPG 756



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 250/522 (47%), Gaps = 50/522 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C++ K+    K +H  LF+L   + T+L N  ++LYS+         +FD IP 
Sbjct: 10  ANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPH 69

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN  SWN  L    K+ NL  A ++F ++P+ + VS N++IS    CGY   AL+ +  +
Sbjct: 70  KNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSV 129

Query: 139 QLQGVRPSGFTFSILLSTVSS---ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
            L GV PS  TF+ + S   S   A  G++ HG +I+ GL  SN+ + N+L+ MY K G+
Sbjct: 130 MLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLE-SNIYVVNALLCMYAKCGL 188

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              A  VF ++ E + +++ +++ G   +   + A + F  M   G   D  ++S ++  
Sbjct: 189 NADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGV 248

Query: 256 CTK----------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
           C K          +    +GKQ+  LSVK+GF  +  + ++ +D+++K   ++ + ++F 
Sbjct: 249 CAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFV 308

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHG 365
            L+R      N+MI+ YG     E A E  Q M  +   P + T   +L++         
Sbjct: 309 NLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTAC-------- 360

Query: 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQN 425
                                      K+G + +  +IF  +    L SWN I+ G  QN
Sbjct: 361 --------------------------VKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQN 394

Query: 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485
               E +++F ++  +   PDR TLA +L +C   GF++ G  V +A  +++G       
Sbjct: 395 ADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAA-SQKFGFYDDVYV 453

Query: 486 YACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            + +I++  + G++  +  + S +P +     W S+L   +I
Sbjct: 454 ASSLINVYSKCGKMELSKHVFSKLP-ELDVVCWNSMLAGFSI 494


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/560 (29%), Positives = 296/560 (52%), Gaps = 31/560 (5%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K +H H+ KLGF     L N+ L++Y +    +   +LFDE+  +N ++WN  + GL+ 
Sbjct: 7   GKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVD 66

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
               D                       Y S  Y  +    F KM L  V     T + L
Sbjct: 67  CRGSD-----------------------YESSVYMGFCY--FRKMLLDKVGFDAITLNGL 101

Query: 154 LST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELD 210
           L     ++    G+++H  +++ G ++++ V  ++L+D+YGK G++  A   F  +   D
Sbjct: 102 LRACLELNDVEIGRELHCFIVKLGFAVNSFV-NSALVDLYGKCGLVKEARRAFDEVYCRD 160

Query: 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270
           ++ WN ++S    +   E A   F  M+   +  D +T S ++N+C  L + + G+Q+  
Sbjct: 161 LVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHG 220

Query: 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
           LS+K+ F  + +V S  +D+++K   ++D+ + F+ +   +    N M+  YGR G G  
Sbjct: 221 LSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGE 280

Query: 331 ALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAIKSGFDSNAVVASSLME 389
           A++L   M +ED+RP E TL+ ++ S           Q ++  +K+GF +   +A++L+ 
Sbjct: 281 AMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALIN 340

Query: 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449
            Y+K GSI  + + F  + + DLV+W +++     +     ++D FEE+L +G+ PD+I 
Sbjct: 341 AYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIV 400

Query: 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509
              VL AC++ G V++G+  FS MK +Y ++PG EHY C+IDLL +AG L +A +I ++M
Sbjct: 401 FLEVLSACSHAGLVNEGLHYFSLMK-DYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSM 459

Query: 510 PFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569
                     + + A  I+GDVKL +  AE++ +++   P+ Y+L++  +A  G W  + 
Sbjct: 460 SIGYSSDTLGAFIGACKIHGDVKLAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHWHDVA 519

Query: 570 RVKKVMRKNGINKVTGCSWI 589
           R+ K+MR    + V GCSW+
Sbjct: 520 RIHKLMRDRCGHGVPGCSWM 539



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 176/407 (43%), Gaps = 38/407 (9%)

Query: 4   YLKKAHVNKASLSYCS--QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           Y +K  ++K      +   L+  CL     +  + +H  + KLGF  ++++ +  +DLY 
Sbjct: 82  YFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYG 141

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
           + G   +  + FDE+  +                               D+V WN M+S 
Sbjct: 142 KCGLVKEARRAFDEVYCR-------------------------------DLVLWNVMLSC 170

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLS 178
           YA    ++ A   F  MQ +     GFTFS +L+   T+ S   G+QIHG  I+    L 
Sbjct: 171 YAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDL- 229

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +V++ + L+DMY K   +  A   F  M   +++SWN+++ G    G G  A+     M 
Sbjct: 230 DVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMF 289

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
                PDE T++ +I +C+      +  QV A  +K GF +   + +A I+ +SK   + 
Sbjct: 290 QEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIA 349

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +++ F  +   D      +I  Y  +   + +++ F+ ML + + P +     VLS+  
Sbjct: 350 MALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACS 409

Query: 359 IPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
               V  G  + S+             + L+++  + G +D +  I 
Sbjct: 410 HAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGRAGLLDEAFNIL 456



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 127/292 (43%), Gaps = 35/292 (11%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +++ C +  S +  + IHG   KL F+    + +  +D+Y++    DD  + FD +  
Sbjct: 200 SSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAFDGMAA 259

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N +SWN                               +M+ GY   G    A+++   M
Sbjct: 260 RNVVSWN-------------------------------TMVVGYGRLGDGGEAMKLLIGM 288

Query: 139 QLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
             + +RP   T + ++ + SSA   C   Q++  ++++G   + + + N+LI+ Y K G 
Sbjct: 289 FQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFH-AFLSIANALINAYSKGGS 347

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           +  A   F  + E D+++W SLI         + ++D F  M   G  PD+     V++A
Sbjct: 348 IAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSA 407

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           C+    +++G   F+L      L      +  IDL  +   L+++  +   +
Sbjct: 408 CSHAGLVNEGLHYFSLMKDYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSM 459



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 11/214 (5%)

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI-- 319
           L +GKQV +  +K+GF +   + +  ++++ KC     + RLF+++   +    N +I  
Sbjct: 4   LREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICG 63

Query: 320 ------STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMA 372
                 S Y    +  +    F+ ML + +     TL+ +L + + +  VE G + H   
Sbjct: 64  LVDCRGSDYESSVY--MGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFI 121

Query: 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +K GF  N+ V S+L+++Y K G +  +   F ++  RDLV WN ++     N  A E  
Sbjct: 122 VKLGFAVNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEAS 181

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
             F+ + EE    D  T +++L +C   G  + G
Sbjct: 182 GFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLG 215


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/623 (27%), Positives = 306/623 (49%), Gaps = 49/623 (7%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
           NK S +    ++  C +    +    +H ++ + G      +GN  + +Y+R G+     
Sbjct: 252 NKVSFA---SILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGS----- 303

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
                                     L  A +VFD +  P+ VSWN+MI+GY   G+ + 
Sbjct: 304 --------------------------LANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEE 336

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
           A  +F  MQ +G +P  FT++ LL+  +       GK++H  ++R+    ++V +  +LI
Sbjct: 337 AFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWE-ADVTVATALI 395

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            MY K G L  A  VF  M E + +SWN+ I+ C   G  + A   F  MR     PD  
Sbjct: 396 SMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHV 455

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T   ++N+CT   + ++G+ +     + G LSN++V +A I ++ +C +L D+  +F ++
Sbjct: 456 TFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRI 515

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
            R D    N MI+ Y ++G    A +LF     E  +  ++T   VL +I  +  ++ G 
Sbjct: 516 RRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGR 575

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           + H +  K+G + +  + ++L++MY+K GS+  +  +F  + ++D+V WN ++     + 
Sbjct: 576 KIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSD 635

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
              + L +F+++  EG+ PD  T  +VL AC   G ++ G    + +KE   +     HY
Sbjct: 636 HGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEA-AMETDTRHY 694

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
           AC++  L +A  L +A +    +  +    +WES+L A  I+ +V L E   E ++D++ 
Sbjct: 695 ACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVGLAETAVEHLLDVKA 754

Query: 547 -PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQH 605
             SP     L   YA  GRWE +  +K  MR+ G+     C+ I + +  +TF    + +
Sbjct: 755 QSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCT-IEVNSEFHTF----MTN 809

Query: 606 HGGQKIYLVLRL--LTWEMEDEG 626
           H   +I +  ++  L W+M D+G
Sbjct: 810 HFSPQIGVEDKIEELVWKMMDKG 832



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 133/498 (26%), Positives = 257/498 (51%), Gaps = 38/498 (7%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           +A+L++ ++ +  C+  KS    K +H H+    F    YL N  + +YS+ G+ +D   
Sbjct: 48  QANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIED--- 104

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                       A  VF  + + DVVSWN+MISGYA  G    A
Sbjct: 105 ----------------------------ANNVFQSMEDKDVVSWNAMISGYALHGRGQEA 136

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           +++F +MQ +G++P+  +F  +LS   +      G+QIH  + ++G   S+V +  +LI+
Sbjct: 137 VDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYE-SDVNVSTALIN 195

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G L  A  VF  M E +++SW ++ISG    G  + A   F  +  SG  P++ +
Sbjct: 196 MYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVS 255

Query: 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308
            + ++ ACT   +L++G ++ A   + G     +V +A I ++++C  L ++ ++F+ L 
Sbjct: 256 FASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLR 315

Query: 309 RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQ 367
             +    N MI+ YG  GF E A  LF+ M ++  +P  FT + +L+       +  G +
Sbjct: 316 SPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKE 374

Query: 368 FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGR 427
            HS  +++ ++++  VA++L+ MYAK GS++ + ++F ++ +++ VSWN  +    ++G 
Sbjct: 375 LHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGS 434

Query: 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
             E   VF+++  + + PD +T   +L +C      ++G  +   + +++G++       
Sbjct: 435 EKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKI-DQWGMLSNNLVAN 493

Query: 488 CIIDLLCQAGQLGKAIDI 505
            +I +  + G+L  A ++
Sbjct: 494 ALISMYGRCGKLADAREV 511



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 203/391 (51%), Gaps = 15/391 (3%)

Query: 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS 216
             S   GK++H  M RS     ++ L N LI MY K G +  A  VF +ME+ D++SWN+
Sbjct: 64  AKSLAEGKKVHDHM-RSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNA 122

Query: 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG 276
           +ISG    G G+ A+D FY M+  G  P++ +   +++AC     L+ G+Q+ +   K G
Sbjct: 123 MISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAG 182

Query: 277 FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336
           + S+  V +A I+++ KC  LE + ++F ++   +      MIS Y ++G  + A  LFQ
Sbjct: 183 YESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQ 242

Query: 337 LMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395
            ++R   +P + + + +L +   P  +E G + H+   ++G +   +V ++L+ MYA+ G
Sbjct: 243 KLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCG 302

Query: 396 SIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455
           S+ ++ ++F  L   + VSWN ++ G  + G   E   +F ++ ++G  PDR T A++L 
Sbjct: 303 SLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLA 361

Query: 456 ACNYGGFVDKG-----MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
            C     +++G      +V +A + +  V         +I +  + G L +A  + + MP
Sbjct: 362 ICADRADLNRGKELHSQIVRTAWEADVTVATA------LISMYAKCGSLEEARKVFNQMP 415

Query: 511 FQPGCSIWESILRASAIYGDVKLTENVAERM 541
            +   S W + +     +G  K    V ++M
Sbjct: 416 EKNAVS-WNAFIACCCRHGSEKEAFQVFKQM 445



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 155/282 (54%), Gaps = 12/282 (4%)

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           +  C + ++L +GK+V        F  +  + +  I ++SKC  +ED+  +F+ ++  D 
Sbjct: 58  LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHGSQFHSM 371
              N MIS Y  +G G+ A++LF  M RE ++P + +   +LS+   P V E G Q HS 
Sbjct: 118 VSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSH 177

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K+G++S+  V+++L+ MY K GS++ + ++F ++ +R++VSW  ++ G  Q+G + E 
Sbjct: 178 ITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEA 237

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE---EYGVMPGEEHYAC 488
             +F++L+  G  P++++ A++L AC     +++G+ + + +K+   E  V+ G      
Sbjct: 238 FVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGN----A 293

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
           +I +  + G L  A  +   +   P    W +++   A YG+
Sbjct: 294 LISMYARCGSLANARQVFDNLR-SPNRVSWNAMI---AGYGE 331


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 157/511 (30%), Positives = 279/511 (54%), Gaps = 11/511 (2%)

Query: 117 SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS 176
           + +S + SC    Y LEM  K++   +R     F  +L    +    K+IH  +++  LS
Sbjct: 31  TRMSIHDSCHGWIYVLEM--KLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLS 88

Query: 177 LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS 236
            S+ ++   ++D+    G   YA  +F  + + +   +N++I    ++    LA+  +  
Sbjct: 89  QSSFLV-TKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQ 147

Query: 237 MRYSGYS-----PDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           M  + +      PD++T   V+ +C  L   D GKQV     K G  SN++V ++ ++++
Sbjct: 148 MLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMY 207

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVIN--VMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
            KC+ L+D+ R+FE++   D  + +   ++S Y R G    ALE F+ M    I P E +
Sbjct: 208 VKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEIS 267

Query: 350 LSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           L  VL     +  +E G   H  A K+GF  N  V ++L+EMYAK GSID    +F ++ 
Sbjct: 268 LVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMK 327

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +RD++SW+T+++GL  +GRA E +++F+E+ +  + P  IT   +L AC + G +++G+ 
Sbjct: 328 ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLR 387

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIY 528
            F +MK +Y + PG EHY C+++LL  +G+L +A+++   MP +P   IW S+L +   +
Sbjct: 388 YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSH 447

Query: 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588
           G++K+     E +++L+      Y LL+  YA  G+W+ + R++K+MR   + K  GCS 
Sbjct: 448 GNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSS 507

Query: 589 IGIKNRIYTFNAGELQHHGGQKIYLVLRLLT 619
           I + N +  F +G+      + I  VL+LL 
Sbjct: 508 IEVDNMVQEFASGDDSKPFSKAICRVLKLLV 538



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 163/343 (47%), Gaps = 39/343 (11%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C     +D  K +HGH+FK G  ++T + N  +++Y +  + DD  ++F+E+ +++
Sbjct: 168 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERD 227

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                                          + SW +++SGYA  G    ALE F +MQ+
Sbjct: 228 AT-----------------------------IFSWTAIVSGYARIGCYADALEFFRRMQM 258

Query: 141 QGVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G+ P   +   +L   + + +   GK IH    ++G  L N+ + N+LI+MY K G + 
Sbjct: 259 VGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGF-LRNICVCNALIEMYAKCGSID 317

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
               +F  M+E D+ISW+++I G  N G    A++ F  M+ +   P   T   ++ AC 
Sbjct: 318 QGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA 377

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDSVRLFEQLDRW-DYAV 314
               L++G + F  S+K  +     V      ++L     RL+ ++ L +++ R  D  +
Sbjct: 378 HAGLLNEGLRYFE-SMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPI 436

Query: 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
              ++S+   +G  ++A+   + +L  ++ P +     +LS++
Sbjct: 437 WGSLLSSCRSHGNLKIAVIAMEHLL--ELEPADTGNYVLLSNL 477



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 36/226 (15%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           +    +S  S L D C    + +  K IH +  K GF  +  + N  +++Y++ G+ D  
Sbjct: 261 IEPDEISLVSVLPD-CAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQG 319

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129
            +LFD++ +++ ISW+  + GL                               A+ G + 
Sbjct: 320 RRLFDQMKERDVISWSTMIVGL-------------------------------ANHGRAR 348

Query: 130 YALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSL 186
            A+E+F +MQ   + PS  TF  LL+  + A     G +   SM R       V     L
Sbjct: 349 EAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCL 408

Query: 187 IDMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELAL 231
           +++ G  G L  A  +   M  + D   W SL+S C + G  ++A+
Sbjct: 409 VNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAV 454


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/544 (30%), Positives = 295/544 (54%), Gaps = 19/544 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +++ A ++F+E+P+ D+ SW ++I G    G    AL +F KM+ +G+ P     S+
Sbjct: 179 KCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPD----SV 234

Query: 153 LLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205
           +++++  AC        G  +    +RSG   S++ + N++IDMY K G    A  VF +
Sbjct: 235 IVASILPACGRLEAVKLGMALQVCAVRSGFE-SDLYVSNAVIDMYCKCGDPLEAHRVFSH 293

Query: 206 MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
           M   D++SW++LI+G   +   + +   +  M   G + +    + V+ A  KL  L +G
Sbjct: 294 MVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQG 353

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           K++    +K G +S+ +V SA I +++ C  ++++  +FE     D  V N MI  Y   
Sbjct: 354 KEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLV 413

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI----PPVEHGSQFHSMAIKSGFDSNA 381
           G  E A   F+ +   + RP   T   V+S +PI      +  G + H    KSG   N 
Sbjct: 414 GDFESAFFTFRRIWGAEHRPNFIT---VVSILPICTQMGALRQGKEIHGYVTKSGLGLNV 470

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            V +SL++MY+K G ++   ++F ++  R++ ++NT++     +G+  + L  +E++ EE
Sbjct: 471 SVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEE 530

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501
           G  P+++T  ++L AC++ G +D+G L++++M  +YG+ P  EHY+C++DL+ +AG L  
Sbjct: 531 GNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDG 590

Query: 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
           A    + MP  P  +++ S+L A  ++  V+LTE +AER++ L+      Y LL+  YA 
Sbjct: 591 AYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYAS 650

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
             RWE + +V+ +++  G+ K  G SWI + + IY F+A    H    KI   L  L   
Sbjct: 651 GKRWEDMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETLNSLLLV 710

Query: 622 MEDE 625
           M+ E
Sbjct: 711 MKSE 714



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 185/376 (49%), Gaps = 8/376 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +L  A   F  +P   +++WN+++ G  + G+   A+  +  M   GV P  +T+ ++L 
Sbjct: 82  SLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLK 141

Query: 156 TVSSACH----GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
             SS  H    G+ +H +M   G + +NV +  ++IDM+ K G +  A  +F  M + D+
Sbjct: 142 ACSS-LHALQLGRWVHETM--HGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDL 198

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
            SW +LI G   +G    AL  F  MR  G  PD   ++ ++ AC +L  +  G  +   
Sbjct: 199 ASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVC 258

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331
           +V+ GF S+  V +A ID++ KC    ++ R+F  +   D    + +I+ Y +    + +
Sbjct: 259 AVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQES 318

Query: 332 LELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390
            +L+  M+   +       + VL ++  +  ++ G + H+  +K G  S+ VV S+L+ M
Sbjct: 319 YKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVM 378

Query: 391 YAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450
           YA  GSI  +  IF     +D++ WN++++G    G        F  +      P+ IT+
Sbjct: 379 YANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITV 438

Query: 451 AAVLLACNYGGFVDKG 466
            ++L  C   G + +G
Sbjct: 439 VSILPICTQMGALRQG 454



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 172/350 (49%), Gaps = 4/350 (1%)

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
             + L+++Y   G L +AF  F  +    II+WN+++ G    G+   A+  ++SM   G
Sbjct: 69  FASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHG 128

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
            +PD YT  +V+ AC+ L  L  G+ V   ++     +N  V  A ID+F+KC  +ED+ 
Sbjct: 129 VTPDNYTYPLVLKACSSLHALQLGRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDAR 187

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIP 360
           R+FE++   D A    +I      G    AL LF+ M  E + P    ++ +L +   + 
Sbjct: 188 RMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLE 247

Query: 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMM 420
            V+ G      A++SGF+S+  V++++++MY K G    +  +F  +   D+VSW+T++ 
Sbjct: 248 AVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIA 307

Query: 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480
           G +QN    E+  ++  ++  GL  + I   +VL A      + +G  + + + +E G+M
Sbjct: 308 GYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKE-GLM 366

Query: 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
                 + +I +    G + +A  I           +W S++    + GD
Sbjct: 367 SDVVVGSALIVMYANCGSIKEAESIFECTS-DKDIMVWNSMIVGYNLVGD 415



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 121/272 (44%), Gaps = 17/272 (6%)

Query: 261 NLDKGKQVFALSVKVGFLS-----NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           NL + + + AL + +GF       +S   S  ++++     L+ +   F  L        
Sbjct: 42  NLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAW 101

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIK 374
           N ++      G    A+  +  ML+  + P  +T   VL +   +  ++ G   H   + 
Sbjct: 102 NAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHE-TMH 160

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
               +N  V  ++++M+AK GS++ +  +F ++  RDL SW  ++ G   NG   E L +
Sbjct: 161 GKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLL 220

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH----YACII 490
           F ++  EGL PD + +A++L AC     V  GM +     +   V  G E        +I
Sbjct: 221 FRKMRSEGLMPDSVIVASILPACGRLEAVKLGMAL-----QVCAVRSGFESDLYVSNAVI 275

Query: 491 DLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           D+ C+ G   +A  + S M +    S W +++
Sbjct: 276 DMYCKCGDPLEAHRVFSHMVYSDVVS-WSTLI 306



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C    +    K IHG++ K G   +  +GN  +D+YS+ G                    
Sbjct: 445 CTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGF------------------- 485

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                       L+   KVF ++   +V ++N+MIS   S G  +  L  + +M+ +G R
Sbjct: 486 ------------LELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNR 533

Query: 145 PSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
           P+  TF  LLS  S A     G  ++ SMI       N+   + ++D+ G+ G L  A+ 
Sbjct: 534 PNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYK 593

Query: 202 VFLNME-ELDIISWNSLISGC 221
               M    D   + SL+  C
Sbjct: 594 FITRMPMTPDANVFGSLLGAC 614


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/559 (28%), Positives = 292/559 (52%), Gaps = 53/559 (9%)

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS-CGYSDYALE 133
           E    N I+ N  +   ++  ++D+A++VF+++     V+WNS+++ +A   G+ +YA +
Sbjct: 35  EFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQ 94

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIR---SGLSLSNVVLGNSLIDMY 190
           +F K+     +P+  +++I+L     ACH   +     R     + L +V   N++I   
Sbjct: 95  LFEKIP----QPNTVSYNIML-----ACHWHHLGVHDARGFFDSMPLKDVASWNTMISAL 145

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            ++G++  A  +F  M E + +SW++++SG    G  + A++ FY+      +P      
Sbjct: 146 AQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYA------AP------ 193

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
                                      + + I  +A I  + K  R+E + RLF+++   
Sbjct: 194 ---------------------------MRSVITWTAMITGYMKFGRVELAERLFQEMSMR 226

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFH 369
                N MI+ Y   G  E  L LF+ ML   ++P   +L+ VL     +  ++ G Q H
Sbjct: 227 TLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVH 286

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
            +  K    S+    +SL+ MY+K G +  + E+F+++ ++D+V WN ++ G  Q+G   
Sbjct: 287 QLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGK 346

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           + L +F+E+ +EGL PD IT  AVLLACN+ G VD G+  F+ M+ ++G+    EHYAC+
Sbjct: 347 KALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACM 406

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
           +DLL +AG+L +A+D+  +MPF+P  +I+ ++L A  I+ ++ L E  A+ +++L     
Sbjct: 407 VDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIA 466

Query: 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQ 609
             Y  L   YA + RW+ +  +++ M+ N + K+ G SWI I + ++ F + +  H    
Sbjct: 467 TGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELA 526

Query: 610 KIYLVLRLLTWEMEDEGCV 628
            I+  L+ L  +M+  G V
Sbjct: 527 SIHEKLKDLEKKMKLAGYV 545



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 165/335 (49%), Gaps = 8/335 (2%)

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
           QLF++IPQ N +S+NI L        +  A   FD +P  DV SWN+MIS  A  G    
Sbjct: 94  QLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGE 153

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           A  +FS M  +       ++S ++S    AC G             + +V+   ++I  Y
Sbjct: 154 ARRLFSAMPEKNC----VSWSAMVSGY-VAC-GDLDAAVECFYAAPMRSVITWTAMITGY 207

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  +F  M    +++WN++I+G   +G  E  L  F +M  +G  P+  +++
Sbjct: 208 MKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLT 267

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V+  C+ L  L  GKQV  L  K    S++   ++ + ++SKC  L+D+  LF Q+ R 
Sbjct: 268 SVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK 327

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-F 368
           D    N MIS Y ++G G+ AL LF  M +E ++P   T   VL +      V+ G Q F
Sbjct: 328 DVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYF 387

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403
           ++M    G ++     + ++++  + G +  + ++
Sbjct: 388 NTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDL 422



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 36/289 (12%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL------------ 101
           N  +   ++ G   +  +LF  +P+KNC+SW+  + G +   +LD A+            
Sbjct: 139 NTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVI 198

Query: 102 -------------------KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
                              ++F E+    +V+WN+MI+GY   G ++  L +F  M   G
Sbjct: 199 TWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETG 258

Query: 143 VRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           V+P+  + + +L   S +S+   GKQ+H  + +  LS S+   G SL+ MY K G L  A
Sbjct: 259 VKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLS-SDTTAGTSLVSMYSKCGDLKDA 317

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259
           + +F+ +   D++ WN++ISG    G G+ AL  F  M+  G  PD  T   V+ AC   
Sbjct: 318 WELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHA 377

Query: 260 RNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             +D G Q F  +    G  +     +  +DL  +  +L ++V L + +
Sbjct: 378 GLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDV 69
           V   +LS  S L+  C +  +    K +H  + K   ++ T  G   + +YS+ G   D 
Sbjct: 259 VKPNALSLTSVLLG-CSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDA 317

Query: 70  LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASC 125
            +LF +IP+K+ + WN  + G  +      AL++FDE+     +PD +++ +++      
Sbjct: 318 WELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHA 377

Query: 126 GYSDYALEMFSKMQ 139
           G  D  ++ F+ M+
Sbjct: 378 GLVDLGVQYFNTMR 391


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/488 (32%), Positives = 267/488 (54%), Gaps = 6/488 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +S  L  A  +FD++P    V+WN++I G+A       A+  F++M   GV P+  + S 
Sbjct: 106 RSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSS 165

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L     +  A  G  +H   +  G   S VV+G +L+DMY K   L  A  VF  MEE 
Sbjct: 166 VLVACVRLEDAAAGATLHSVGLMHGFCAS-VVVGTALVDMYAKCHHLGAAQQVFREMEEK 224

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ ++ +L++G   S     A+     M  SG +P+  T S ++++     ++D GKQV 
Sbjct: 225 NVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVH 284

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G   +  VLSA + ++SKC  LED V++   +   D    N +IS     G G+
Sbjct: 285 CAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGK 344

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A + F  M R       FT + VL +I     +  G Q H++ +K G+DS   V +SL+
Sbjct: 345 EAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLI 404

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYA+ G+I  S  +F+ ++  +LVSWN++M G  Q+G   E +++FE++    + PD I
Sbjct: 405 SMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHI 464

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE-YGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           T  +VL AC++ G VDKG+  F+ MK++ Y V    EHYAC++DLL +AG L +A  + +
Sbjct: 465 TFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLIN 524

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +PG S++ ++L A  I+G++++   V++R+++L       +  L+ A+A  GRW  
Sbjct: 525 GMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGN 584

Query: 568 IVRVKKVM 575
              +++ M
Sbjct: 585 AAEIREAM 592



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 183/375 (48%), Gaps = 5/375 (1%)

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           G   SN+    +L+  Y +   L  A  +F  M     ++WN+LI G   S    LA+  
Sbjct: 88  GFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAA 147

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M  +G SP   ++S V+ AC +L +   G  + ++ +  GF ++ +V +A +D+++K
Sbjct: 148 FARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAK 207

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C+ L  + ++F +++  + A    +++ +        A+ L + M R  + P   T S +
Sbjct: 208 CHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSL 267

Query: 354 LSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LSS   P  ++HG Q H   +K G + +  V S+L+ MY+K G ++   ++ + +  +D 
Sbjct: 268 LSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQ 327

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS- 471
           VS+N+++ GL+  GR  E    F E+   G   D  T A+VL A      + +G  V + 
Sbjct: 328 VSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTL 387

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            +K  Y  +   ++   +I +  + G +G++  +  +M   P    W S++   A +G  
Sbjct: 388 ILKIGYDSVVDVQN--SLISMYARHGAIGESNGVFISME-APNLVSWNSLMSGCAQHGHG 444

Query: 532 KLTENVAERMMDLQL 546
           K    + E+M  L +
Sbjct: 445 KEVVEMFEQMRRLHV 459



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 170/355 (47%), Gaps = 36/355 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + +A V+  + S  S L+  C+  +      T+H      GF A   +G   +D+Y++  
Sbjct: 151 MARAGVSPTASSVSSVLV-ACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCH 209

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                 Q+F E+ +KN                               V ++ ++++G+  
Sbjct: 210 HLGAAQQVFREMEEKN-------------------------------VATFTALVAGFVL 238

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVV 181
                 A+ +  +M+  GV P+  T+S LLS+ +S     HGKQ+H ++++ GL     V
Sbjct: 239 SRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFV 298

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L ++L+ MY K G+L     V +++   D +S+NS+ISG    G G+ A   F  MR  G
Sbjct: 299 L-SALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHG 357

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D +T + V+ A     +L +G+QV  L +K+G+ S   V ++ I ++++   + +S 
Sbjct: 358 TDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESN 417

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +F  ++  +    N ++S   ++G G+  +E+F+ M R  ++P   T   VL++
Sbjct: 418 GVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTA 472



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMY 391
           E+   +   D R     +  + +  P P      Q H+ A K GF  SN    ++L+  Y
Sbjct: 45  EMRDFLRHADARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNLFATTALLAFY 104

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            ++  +  +  +F ++  R  V+WNT++ G  ++      +  F  +   G+ P   +++
Sbjct: 105 CRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVS 164

Query: 452 AVLLAC 457
           +VL+AC
Sbjct: 165 SVLVAC 170



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  + K+G+++   + N  + +Y+R G   +   +F  +   N +SWN  + G  + 
Sbjct: 382 RQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQH 441

Query: 95  DNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
            +    +++F+++     +PD +++ S+++  +  G  D  LE F+ M+ +G
Sbjct: 442 GHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 493


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 187/628 (29%), Positives = 323/628 (51%), Gaps = 29/628 (4%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + ++H+ K S S  S ++  C   +     K IH  + K G  +   +G+  L  Y+   
Sbjct: 89  MHRSHM-KLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCF 147

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
              +  ++FD + ++N + W++ L G +  + +D AL VF ++P  DVV+W ++ISG++ 
Sbjct: 148 EIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSK 207

Query: 125 CGYS-DYALEMFSKMQLQG-VRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGL 175
            G     ALE+F  M   G   P+ FTF      V  AC        G+ +HG +++ GL
Sbjct: 208 NGDGCGKALEIFRLMMRSGETTPNEFTFD----CVVRACGRLGILSVGRTVHGLLMKCGL 263

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
              +  +G +L++ Y +   +  A  V   +    + + NSLI G  + G  E A   F 
Sbjct: 264 EY-DPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFN 322

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKC 294
            M  +  +P  Y  +++I        +D  K++F  +  +  F SN++     I ++S+ 
Sbjct: 323 GM--TEMNPVSY--NLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTM-----ISVYSRN 373

Query: 295 NRLEDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
             ++ ++ LFE+  +  D    N MIS Y   G  E AL+L+  M R  I+ T+ T S +
Sbjct: 374 GEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSAL 433

Query: 354 LSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
             +   +  +  G   H+  IK+ F+SN  V +SL++MY+K GSI  +   FV +   ++
Sbjct: 434 FHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNV 493

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
            +W  ++ G   +G  +E + +F+ ++E+GL P+  T   VL AC+  G V++GM +F +
Sbjct: 494 AAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHS 553

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M+  Y V P  EHYAC++DLL ++G + +A +    MP +    +W ++L A   + D++
Sbjct: 554 MERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLE 613

Query: 533 LTENVAERMMDLQLPSPL-PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591
           + E VAE+M     P P+  Y +L+  YA  GRW   + V+K++R   + K  GCSWI +
Sbjct: 614 VGERVAEKMFSFD-PKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIEL 672

Query: 592 KNRIYTFNAGELQHHGGQKIYLVLRLLT 619
            N+I+ F+  +  H     IY  L  LT
Sbjct: 673 NNKIHVFSIEDRSHPYCNMIYATLEHLT 700



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 233/501 (46%), Gaps = 51/501 (10%)

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
           IS NI +    K   LD A ++FD++P+  VVSWN+MIS Y+  G    AL +   M   
Sbjct: 33  ISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRS 92

Query: 142 GVRPSGFTFSILLSTVSS-AC--HGKQIHGSMIRSG------------------------ 174
            ++ S  TFS +LS  +   C   GK IH  +++SG                        
Sbjct: 93  HMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEA 152

Query: 175 ------LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG- 227
                 L   N VL + ++  Y    V+  A  VF+ M   D+++W +LISG   +G G 
Sbjct: 153 RRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGC 212

Query: 228 ELALDQFYSMRYSG-YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286
             AL+ F  M  SG  +P+E+T   V+ AC +L  L  G+ V  L +K G   +  +  A
Sbjct: 213 GKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGA 272

Query: 287 TIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346
            ++ + +C  ++D++R+ + +       +N +I      G  E A  +F  M   ++ P 
Sbjct: 273 LVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM--TEMNPV 330

Query: 347 EFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            + L     ++     +    F  M  ++ F SN +++     +Y++ G ID + E+F +
Sbjct: 331 SYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMIS-----VYSRNGEIDKALELFEE 385

Query: 407 L-DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465
             +++D V+WN+++ G   +G+  E L ++  +    +   + T +A+  AC+  G + +
Sbjct: 386 TKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQ 445

Query: 466 GMLVFSAMKE---EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           G L+ + + +   E  V  G      +ID+  + G + +A   +    F P  + W +++
Sbjct: 446 GQLLHAHLIKTPFESNVYVGTS----LIDMYSKCGSIMEA-QTSFVSIFSPNVAAWTALI 500

Query: 523 RASAIYGDVKLTENVAERMMD 543
              A +G      ++ +RM++
Sbjct: 501 NGHAYHGLGSEAISLFDRMIE 521



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 47/383 (12%)

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
           +LS ++  N  I  Y K   L  A  +F  M +  ++SWN++IS     G    AL   Y
Sbjct: 28  NLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVY 87

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK-- 293
           SM  S     E T S V++ C +LR L  GK +  L +K G  S  +V SA +  ++   
Sbjct: 88  SMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCF 147

Query: 294 -----------------------------CNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
                                        CN ++D++ +F ++ R D      +IS + +
Sbjct: 148 EIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSK 207

Query: 325 YGFG-EVALELFQLMLRE-DIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNA 381
            G G   ALE+F+LM+R  +  P EFT  CV+ +   +  +  G   H + +K G + + 
Sbjct: 208 NGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDP 267

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            +  +L+E Y +  +ID +  +   +    L + N+++ GL   GR  +   VF  + E 
Sbjct: 268 SIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE- 326

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA--CIIDLLCQAGQL 499
            + P  ++   ++     GG +D    +F         MP    ++   +I +  + G++
Sbjct: 327 -MNP--VSYNLMIKGYAVGGQMDDSKRLFEK-------MPCRTIFSSNTMISVYSRNGEI 376

Query: 500 GKAIDITSTMPFQPGCSIWESIL 522
            KA+++      +     W S++
Sbjct: 377 DKALELFEETKNEKDPVTWNSMI 399


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 180/650 (27%), Positives = 325/650 (50%), Gaps = 61/650 (9%)

Query: 2   SSYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS 61
           S+ +  AH  ++ L     L+  C+  +S   A+  H  +   GF  + +L  R +  Y+
Sbjct: 19  SATVSLAHTPQSLL----HLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYA 74

Query: 62  RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121
             G                                L T+  VF+ +    V  WNS+I+G
Sbjct: 75  TCG-------------------------------ELATSRFVFESVEAKSVYLWNSLING 103

Query: 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLS 178
           Y        AL +F +M   G+ P  +T + +      +     GK IHG  IR G  +S
Sbjct: 104 YVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGF-VS 162

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN------SGYGELALD 232
           +VV+GNSL+ MY + G    A  VF      ++ S+N +ISGC        + + +L+ +
Sbjct: 163 DVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLS-N 221

Query: 233 QFYSMRYSGYSPDEYTI-SIVINACTKLRNLDKGKQVFALSVKVGF---LSNSIVL-SAT 287
            F  M+  G+  D +T+ S++   C      D G+++    VK G    + + + L S+ 
Sbjct: 222 FFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSL 281

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM-LREDIRPT 346
           ID++S+  ++    R+F+Q+   +  V   MI+ Y + G  + AL L + M +++ IRP 
Sbjct: 282 IDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPN 341

Query: 347 EFTLSCVLSSIP----IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
           + +L   +S++P    +  +  G Q H  +IK   + +  + ++L++MY+K GS+D +  
Sbjct: 342 KVSL---ISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARR 398

Query: 403 IFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
            F      +D ++W++++     +GR  E +  + ++L++G  PD IT+  VL AC+  G
Sbjct: 399 AFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSG 458

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            VD+G+ ++ ++  +Y + P  E  AC++D+L ++GQL +A++    MP  PG S+W S+
Sbjct: 459 LVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSL 518

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L AS I+G+ +  +     +++L+  +P  Y  L+  YA   RW+ +  V+ +M++ G+ 
Sbjct: 519 LTASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLK 578

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLE 631
           KV GCSWI I  + ++F+  +  H     IY +L  L   M D GC  ++
Sbjct: 579 KVPGCSWITISGKTHSFSVADKAHPSSSLIYEMLGDLVSIMTD-GCADID 627


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 163/542 (30%), Positives = 275/542 (50%), Gaps = 7/542 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D  D AL VF  I   +V SW  M++ +A     D     F  M LQG+ P     SI
Sbjct: 22  KCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISI 81

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            LS  + A     G+ I  +++ +G+   ++V   +L+ +YGKLG    A  VFL M   
Sbjct: 82  FLSACTDAREITIGRSIQLAILGTGIEEESIV-QTALVSLYGKLGHCTDAASVFLRMSHR 140

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           D+++W+++++    +G+   AL  F  M   G +P++ T+   ++AC  L +L  G  + 
Sbjct: 141 DVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMH 200

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
                 G  S  +V +A ++L+ KC R+E +   F Q+   +    + + + Y R     
Sbjct: 201 QRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNR 260

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSM--AIKSGFDSNAVVASS 386
            A+ +   M  E + P   T   VL +   I  ++ G + H     +  G +S+  V ++
Sbjct: 261 DAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTA 320

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MY+K G++  +  +F K+   DLV WN+++    Q+G+  + L++FE +  EGL P 
Sbjct: 321 LVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPT 380

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT  +VL AC++ G +D+G   F +   ++G+ P  EH+ C++DLL +AG +  + D+ 
Sbjct: 381 IITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLL 440

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MPF+P    W + L A   Y ++      AE +  L      PY LL+  YA  GRW 
Sbjct: 441 LHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWS 500

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
            + R+++ M+     K  G SWI +K+R++ F +G+L H    +I+  L+ LT  M+  G
Sbjct: 501 DVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAG 560

Query: 627 CV 628
            V
Sbjct: 561 YV 562



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 134/277 (48%), Gaps = 4/277 (1%)

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           ++G++ N  + +  IDL++KC+R +D++ +F  +   +     +M++ +      +    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 334 LFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
            F+ ML + I P E  +S  LS+      +  G       + +G +  ++V ++L+ +Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G    +  +F+++  RD+V+W+ ++    +NG   E L +F ++  +G+ P+++TL +
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
            L AC   G +  G L+   + E  G+  G      +++L  + G++  A +    +  +
Sbjct: 183 GLDACASLGDLRSGALMHQRV-EAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VE 240

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549
                W +I  A A     +    V  R MDL+  +P
Sbjct: 241 KNVVAWSAISAAYARNDRNRDAIRVLHR-MDLEGLAP 276



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 36/284 (12%)

Query: 22  IDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC 81
           +D C S         +H  +   G  +   +G   ++LY + G  +   + F +I +KN 
Sbjct: 184 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN- 242

Query: 82  ISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141
                                         VV+W+++ + YA    +  A+ +  +M L+
Sbjct: 243 ------------------------------VVAWSAISAAYARNDRNRDAIRVLHRMDLE 272

Query: 142 GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSL-SNVVLGNSLIDMYGKLGVLY 197
           G+ P+  TF  +L   + +++   G++IH  +   G  L S+V +  +L++MY K G L 
Sbjct: 273 GLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLA 332

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F  +  LD++ WNSLI+     G  E AL+ F  MR  G  P   T + V+ AC+
Sbjct: 333 LAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACS 392

Query: 258 KLRNLDKGKQVFALSV-KVGFLSNSIVLSATIDLFSKCNRLEDS 300
               LD+G++ F   +   G    +      +DL  +   + DS
Sbjct: 393 HAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDS 436


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 327/621 (52%), Gaps = 52/621 (8%)

Query: 24  RCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCIS 83
           R L   S  FA   HG++F+ GF+A   + N  L LY+      +V   F          
Sbjct: 159 RELKIYSQGFA--FHGYIFRSGFSAILSVQNSLLSLYA------EVHMYF---------- 200

Query: 84  WNICLRGLLKSDNLDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ- 141
                           A K+F E+    DVVSW+ MI G+   G  +    MF  M  + 
Sbjct: 201 ----------------AHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEA 244

Query: 142 GVRPSGFTFSILL---STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
           G+ P G T   +L   + +     G  +HG +I  GL   ++ +GNSLIDMY K   ++ 
Sbjct: 245 GIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLE-DDLFVGNSLIDMYSKCFNVHS 303

Query: 199 AFGVFLNMEELDIISWNSLISG-CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
           AF  F  + E +IISWN ++S    N  + E AL    +M   G   DE T++ V+    
Sbjct: 304 AFKAFKEIPEKNIISWNLMLSAYILNESHLE-ALALLGTMVREGAEKDEVTLANVLQIAK 362

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
              +  K + V  + ++ G+ SN ++L++ ID ++KCN +E +  +F+ +++ D    + 
Sbjct: 363 HFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWST 422

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQF-HSMAIKSG 376
           MI+ + R G  + A+ +F+ M  E++ P   ++  ++ +  +      S++ H +A++ G
Sbjct: 423 MIAGFARNGKPDEAISVFKQM-NEEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRG 481

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             S   + +S+++MY+K G I++S   F ++ ++++V W+ ++     NG A E L +FE
Sbjct: 482 LASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFE 541

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++ + G  P+ +T  ++L AC++GG +++G+  F++M +++G+ PG EHY+CI+D+L +A
Sbjct: 542 KIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRA 601

Query: 497 GQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554
           G+  +A+++   +P   + G SIW ++L +   YG++ L    A R++ L+  S   Y L
Sbjct: 602 GKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYML 661

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
            +  YA  G      +++++ ++ G+  V G S + I ++ + F AG++ +    +IYL+
Sbjct: 662 ASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINSQTWRFVAGDVLNPRADEIYLM 721

Query: 615 LRLLTWEMEDEGCVYLECDKL 635
           ++ L       G + ++C KL
Sbjct: 722 VKKL------HGVMKIDCLKL 736



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 209/469 (44%), Gaps = 47/469 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C + K       +HG +   G     ++GN  +D+YS+        + F EIP+KN
Sbjct: 256 VLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKN 315

Query: 81  CISWNICLRG-LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
            ISWN+ L   +L   +L+                                AL +   M 
Sbjct: 316 IISWNLMLSAYILNESHLE--------------------------------ALALLGTMV 343

Query: 140 LQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G      T + +L        +   + +HG +IR G   SN +L NS+ID Y K  ++
Sbjct: 344 REGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYE-SNELLLNSVIDAYAKCNLV 402

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF  M + D+++W+++I+G   +G  + A+  F  M      P+  +I  ++ AC
Sbjct: 403 ELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEE-VIPNNVSIMNLMEAC 461

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L + K    ++V+ G  S   + ++ ID++SKC  +E S+R F Q+ + +    +
Sbjct: 462 AVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWS 521

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV-EHG-SQFHSMAIK 374
            MIS +   G    AL LF+ + +   +P   T   +LS+     + E G S F SM  K
Sbjct: 522 AMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQK 581

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
            G +      S +++M ++ G  + + E+  KL K ++ +  +I   L  + R+   + +
Sbjct: 582 HGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPK-EMEAGASIWGTLLSSCRSYGNISL 640

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA----MKEEYGV 479
                   L  + ++ A  +LA N   + + G+++ SA    + +E GV
Sbjct: 641 GSGAASRVLQLEPLSSAGYMLASNL--YANCGLMIDSAKMRRLAKEKGV 687



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 169/333 (50%), Gaps = 14/333 (4%)

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGN 184
           AL+++ ++++ G + S    + +L ++  AC       G  +HG +I+ G   S+  + N
Sbjct: 31  ALQLYHEIRISGAQLSD---TWVLPSILKACSNTSFNLGTAMHGCLIKQGCQ-SSTSIAN 86

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           S ID Y K G L  A   F + +  D +SWN ++ G F++G     L  F   R++ + P
Sbjct: 87  STIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQP 146

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           +  ++ +VI A  +L+   +G        + GF +   V ++ + L+++ + +  + +LF
Sbjct: 147 NISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVH-MYFAHKLF 205

Query: 305 EQLD-RWDYAVINVMISTYGRYGFGEVALELFQLMLRE-DIRPTEFTLSCVLSSIP-IPP 361
            ++  R D    +VMI  + + G  E    +F+ M+ E  I P   T+  VL +   +  
Sbjct: 206 GEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKD 265

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +  G+  H + I  G + +  V +SL++MY+K  ++ S+ + F ++ +++++SWN ++  
Sbjct: 266 ISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSA 325

Query: 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
              N    E L +   ++ EG   D +TLA VL
Sbjct: 326 YILNESHLEALALLGTMVREGAEKDEVTLANVL 358



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
            L++ C        +K  HG   + G  +   +G   +D+YS+ G  +  ++ F++IPQK
Sbjct: 456 NLMEACAVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQK 515

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMF 135
           N + W+  +     +     AL +F++I +    P+ V+  S++S  +  G  +  L  F
Sbjct: 516 NVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFF 575

Query: 136 SKM-QLQGVRPSGFTFSILLSTVSSACH-----------------GKQIHGSMIRSGLSL 177
           + M Q  G+ P    +S ++  +S A                   G  I G+++ S  S 
Sbjct: 576 TSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSY 635

Query: 178 SNVVLGN 184
            N+ LG+
Sbjct: 636 GNISLGS 642


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 173/578 (29%), Positives = 296/578 (51%), Gaps = 44/578 (7%)

Query: 32  DFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL 91
           +  + IH +  K+G ++     N  +D Y + G+   + Q+F+E  +KN +SW       
Sbjct: 278 EMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSW------- 330

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTF- 150
                                   NS+I+G A  G    AL  F  M   G +P+  T  
Sbjct: 331 ------------------------NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTIS 366

Query: 151 SILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           SIL   V   C   GK+IHG  +R G   +++ + NSLIDMY K G    A  +F N++ 
Sbjct: 367 SILPVLVELECFKAGKEIHGFSMRMGTE-TDIFIANSLIDMYAKSGHSTEASTIFHNLDR 425

Query: 209 LDIISWNSLISGCFNSGYGELALDQF---YSMRYSGYSPDEYTISIVINACTKLRNLDKG 265
            +I+SWN++I+   N     L L+       M+ +G  P+  T + V+ AC +L  L  G
Sbjct: 426 RNIVSWNAMIA---NYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG 482

Query: 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRY 325
           K++ A+ V++G  S+  V ++ ID+++KC  L  +  +F    R D    N++I  Y   
Sbjct: 483 KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSET 541

Query: 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVA 384
                +L LF  M     +P   +   V+S+   +  ++ G + H +A+++   S+  V+
Sbjct: 542 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVS 601

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           +SL++ Y K G ID +  +F ++  +D+ SWNT+++G    G     + +FE + ++ + 
Sbjct: 602 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 661

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAID 504
            D ++  AVL AC++GG V++G   FS M  +  + P E HY C++DLL +AG + +A  
Sbjct: 662 YDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR-LEPTEMHYTCMVDLLGRAGFVEEAAK 720

Query: 505 ITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564
           +   +P  P  +IW ++L A  IYG+V+L    AE + +L+      Y LL+  YA  GR
Sbjct: 721 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 780

Query: 565 WEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE 602
           W+   +++++M+  G  K  GCSW+ I ++++ F A E
Sbjct: 781 WDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEE 818



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 246/527 (46%), Gaps = 54/527 (10%)

Query: 30  SFDFAK--TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           SFD  K   +HG +FKLGF+   Y+GN  L LY   G  +D                   
Sbjct: 172 SFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND------------------- 212

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
                       A ++FDE+PE DVVSWN++I   +  G    A   +  M L+ V    
Sbjct: 213 ------------ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPN 260

Query: 148 FTFSILLSTVSSACHG----KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
               I L  +S+A       ++IH   ++ GL  S V   N+L+D YGK G +   + VF
Sbjct: 261 LVSVISLLPISAALEDEEMTRRIHCYSVKVGLD-SQVTTCNALVDAYGKCGSVKALWQVF 319

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
               E + +SWNS+I+G    G    AL+ F  M  +G  P+  TIS ++    +L    
Sbjct: 320 NETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFK 379

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GK++   S+++G  ++  + ++ ID+++K     ++  +F  LDR +    N MI+ Y 
Sbjct: 380 AGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYA 439

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
                  A+     M      P   T + VL +   +  +  G + H+M ++ G  S+  
Sbjct: 440 LNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLF 499

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           V++SL++MYAK G + S+  +F    ++D VS+N +++G ++     ++L++F E+   G
Sbjct: 500 VSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLG 558

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA------CIIDLLCQA 496
             PD ++   V+ AC     + +G       KE +GV      Y+       ++D   + 
Sbjct: 559 KKPDVVSFVGVISACANLAALKQG-------KEVHGVALRNHLYSHLFVSNSLLDFYTKC 611

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
           G++  A  + + + F+   S W +++    + G+++   ++ E M D
Sbjct: 612 GRIDIACRLFNQILFKDVAS-WNTMILGYGMIGELETAISMFEAMRD 657



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 196/400 (49%), Gaps = 8/400 (2%)

Query: 115 WNSMISGYASCGYSDY-ALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSM 170
           WN++I  ++      +   E +++M  +GV+    TF  +L   S +   C G ++HG +
Sbjct: 126 WNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVV 185

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLIS-GCFNSGYGEL 229
            + G   ++V +GN+L+ +YG  G L  A  +F  M E D++SWN++I     N  Y E 
Sbjct: 186 FKLGFD-TDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEA 244

Query: 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATID 289
               F+ +  S   P+  ++  ++     L + +  +++   SVKVG  S     +A +D
Sbjct: 245 RNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVD 304

Query: 290 LFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349
            + KC  ++   ++F +    +    N +I+     G    AL  F++M+    +P   T
Sbjct: 305 AYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVT 364

Query: 350 LSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408
           +S +L   + +   + G + H  +++ G +++  +A+SL++MYAK+G    ++ IF  LD
Sbjct: 365 ISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLD 424

Query: 409 KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468
           +R++VSWN ++     N    E +    ++ E G  P+ +T   VL AC   GF+  G  
Sbjct: 425 RRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKE 484

Query: 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
           +  AM    G+         +ID+  + G L  A ++ +T
Sbjct: 485 I-HAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT 523



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 186/393 (47%), Gaps = 37/393 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++   +  + F   K IHG   ++G     ++ N  +D+Y++ G S +   +F  + +
Sbjct: 366 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 425

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           +N                               +VSWN+MI+ YA       A+    +M
Sbjct: 426 RN-------------------------------IVSWNAMIANYALNRLPLEAIRFVIQM 454

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G  P+  TF+ +L   +       GK+IH   +R GL+ S++ + NSLIDMY K G 
Sbjct: 455 QETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLT-SDLFVSNSLIDMYAKCGC 513

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           L+ A  VF N    D +S+N LI G   +     +L+ F  MR  G  PD  +   VI+A
Sbjct: 514 LHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISA 572

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C  L  L +GK+V  ++++    S+  V ++ +D ++KC R++ + RLF Q+   D A  
Sbjct: 573 CANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASW 632

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N MI  YG  G  E A+ +F+ M  + ++    +   VLS+      VE G Q+ S  + 
Sbjct: 633 NTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLA 692

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
              +   +  + ++++  + G ++ + ++  +L
Sbjct: 693 QRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL 725



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 15/312 (4%)

Query: 153 LLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL---GVLYYAFG-VFLNMEE 208
           L S V S    KQ+H   I +G    +V L  SLI  Y K    G     F   F N   
Sbjct: 63  LCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRT 122

Query: 209 LDIISWNSLISGCFNSGYGEL-ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
             +  WN+LI     +  G     + +  M   G   D++T   V+  C+   ++ KG +
Sbjct: 123 AFL--WNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGME 180

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYG- 326
           V  +  K+GF ++  V +  + L+  C  L D+ RLF+++   D    N +I      G 
Sbjct: 181 VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGD 240

Query: 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV----EHGSQFHSMAIKSGFDSNAV 382
           + E     F ++LR  I+P    L  V+S +PI       E   + H  ++K G DS   
Sbjct: 241 YTEARNYYFWMILRSVIKP---NLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVT 297

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
             ++L++ Y K GS+ +  ++F +  +++ VSWN+I+ GL   GR  + L+ F  +++ G
Sbjct: 298 TCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAG 357

Query: 443 LPPDRITLAAVL 454
             P+ +T++++L
Sbjct: 358 AQPNSVTISSIL 369



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 108/214 (50%), Gaps = 16/214 (7%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL-FSKCNRLEDSVRLFEQLDR- 309
           ++  C+K+++L + KQV AL +  GFL  S+ L A++ L ++K         LF Q  + 
Sbjct: 60  LLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQN 119

Query: 310 ------WDYAVINVMISTYGRY-GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-P 361
                 W+  +    I+  G + GF     E +  M+R  ++  + T   VL        
Sbjct: 120 CRTAFLWNTLIRAHSIAWNGTFDGF-----ETYNRMVRRGVQLDDHTFPFVLKLCSDSFD 174

Query: 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMG 421
           +  G + H +  K GFD++  V ++L+ +Y   G ++ +  +F ++ +RD+VSWNTI+  
Sbjct: 175 ICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGL 234

Query: 422 LTQNGRAAETLD-VFEELLEEGLPPDRITLAAVL 454
           L+ NG   E  +  F  +L   + P+ +++ ++L
Sbjct: 235 LSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 268


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 311/623 (49%), Gaps = 26/623 (4%)

Query: 9   HVNKASLSYC--SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTS 66
           H N   L+    S L+  C         K  H  + K G      +G+  +  Y+     
Sbjct: 95  HCNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDI 154

Query: 67  DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126
               Q+FDE+  KN + W++ L G +K + +D AL +F +IP  DVV+W +MIS YA   
Sbjct: 155 SGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSE 214

Query: 127 YS-DYALEMFSKMQLQG-VRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSL 177
           ++    LE+F  M++ G V P+ FTF     +V  AC        GK +HG + + G   
Sbjct: 215 HNCKRGLELFCSMRMNGEVEPNEFTFD----SVVRACGRMRYLSWGKVVHGILTKYGFHF 270

Query: 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237
            + V  ++LI  Y +   +  A  V+ +ME   + + NSL+ G   +G    A + F  +
Sbjct: 271 DHSVC-SALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKL 329

Query: 238 RYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRL 297
           R    +P  Y  ++++        ++  K++F           +  L+  I ++S+   +
Sbjct: 330 REK--NPVSY--NLMLKGYATSGRIEGSKRLFERMTH----KTTSSLNTMISVYSRNGEI 381

Query: 298 EDSVRLFEQL-DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           + + +LFE +    D    N MIS Y +    E AL+L+  M R  +  +  T S +  +
Sbjct: 382 DKAFKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQA 441

Query: 357 IP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
              +  ++ G   H  AI+  FDSN  V +SL++MYAK GSI  +   F  +   ++ ++
Sbjct: 442 CTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVAAF 501

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475
             ++ G   +G   E   VF+E+L+  +PP+  TL  +L AC+  G V +GM VF +M++
Sbjct: 502 TALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEK 561

Query: 476 EYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTE 535
            YGV+P  EHYAC++DLL ++G+L +A      MP +    IW ++L A   + D++L E
Sbjct: 562 CYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGE 621

Query: 536 NVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRI 595
           +VA++++ L   +   Y +L+  YA  G+W   + V++ +    + K+ GCSWI + N+ 
Sbjct: 622 SVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRKLMSLKVKKIRGCSWIDVNNKT 681

Query: 596 YTFNAGELQHHGGQKIYLVLRLL 618
             F+AG+  H     IY  L  L
Sbjct: 682 CVFSAGDRSHPNCNAIYSTLEHL 704



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 215/470 (45%), Gaps = 58/470 (12%)

Query: 50  TYLGNR---CLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106
           T+  NR   CL+L+S          L  E    N IS NI +   ++  +LD A  +F+E
Sbjct: 10  TWKHNRWKACLELFSTLCEG-----LHTE--NSNIISTNIYISRHVRDGHLDLAQTLFNE 62

Query: 107 IPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-SAC--HG 163
           +P   VVSWN MISGY+  G    AL + S+M    V+ +  TFS LLS  + S C   G
Sbjct: 63  MPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEG 122

Query: 164 KQIHGSMIRSGLSL------------------------------SNVVLGNSLIDMYGKL 193
           KQ H  +++SGL +                               N +L + L+  Y K 
Sbjct: 123 KQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKC 182

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG-ELALDQFYSMRYSG-YSPDEYTISI 251
            ++  A  +F+ +   D+++W ++IS    S +  +  L+ F SMR +G   P+E+T   
Sbjct: 183 NLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDS 242

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           V+ AC ++R L  GK V  +  K GF  +  V SA I  + +C  ++ +  +++ ++R  
Sbjct: 243 VVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPC 302

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ--FH 369
               N ++      G    A E+F   LRE   P  + L  +L          GS+  F 
Sbjct: 303 LKASNSLLEGLIFAGRINDAEEIF-CKLREK-NPVSYNL--MLKGYATSGRIEGSKRLFE 358

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-DLVSWNTIMMGLTQNGRA 428
            M  K+    N +++     +Y++ G ID + ++F  +    D V+WN+++ G  QN + 
Sbjct: 359 RMTHKTTSSLNTMIS-----VYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGYIQNHQH 413

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM-LVFSAMKEEY 477
              L ++  +    +   R T +A+  AC    ++  G  L   A++E +
Sbjct: 414 EGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAF 463


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/543 (29%), Positives = 296/543 (54%), Gaps = 16/543 (2%)

Query: 92  LKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151
           +K  ++ +A  +FD +P  D++SWN+MISGY   G     LE+F  M+   V P   T  
Sbjct: 242 VKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMT-- 299

Query: 152 ILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
             L++V SAC        G+ IH  +I +G ++ ++ + NSL  MY   G    A  +F 
Sbjct: 300 --LTSVISACELLGDRRLGRDIHAYVITTGFAV-DISVCNSLTQMYLNAGSWREAEKLFS 356

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  DI+SW ++ISG   +   + A+D +  M      PDE T++ V++AC  L +LD 
Sbjct: 357 RMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDT 416

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G ++  L++K   +S  IV +  I+++SKC  ++ ++ +F  + R +      +I+    
Sbjct: 417 GVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRL 476

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
                 AL +F   ++  ++P   TL+  L++   I  +  G + H+  +++G   +  +
Sbjct: 477 NNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFL 535

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++L++MY + G ++++   F    K+D+ SWN ++ G ++ G+ +  +++F+ +++  +
Sbjct: 536 PNALLDMYVRCGRMNTAWSQF-NSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRV 594

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            PD IT  ++L  C+    V +G++ FS M E+YGV P  +HYAC++DLL +AG+L +A 
Sbjct: 595 RPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAH 653

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
                MP  P  ++W ++L A  I+  + L E  A+ + +L   S   Y LL   YA  G
Sbjct: 654 KFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCG 713

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           +W  + +V+++M++NG+    GCSW+ +K +++ F + +  H   ++I  VL     +M 
Sbjct: 714 KWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMS 773

Query: 624 DEG 626
           + G
Sbjct: 774 EVG 776



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 207/400 (51%), Gaps = 38/400 (9%)

Query: 52  LGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPD 111
           LGN  L ++ RFG   D   +F ++ ++N  SWN+                         
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNV------------------------- 165

Query: 112 VVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLST---VSSACHGKQIH 167
                 ++ GYA  GY D A+ ++ +M  + GV+P  +TF  +L T   +     GK++H
Sbjct: 166 ------LVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVH 219

Query: 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYG 227
             ++R G  L ++ + N+LI MY K G +  A  +F  M   DIISWN++ISG F +G  
Sbjct: 220 VHVVRYGYEL-DIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMC 278

Query: 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSAT 287
              L+ F++MR     PD  T++ VI+AC  L +   G+ + A  +  GF  +  V ++ 
Sbjct: 279 HEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSL 338

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
             ++       ++ +LF +++R D      MIS Y      + A++ +++M ++ ++P E
Sbjct: 339 TQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDE 398

Query: 348 FTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406
            T++ VLS+   +  ++ G + H +AIK+   S  +VA++L+ MY+K   ID + +IF  
Sbjct: 399 ITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHN 458

Query: 407 LDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           + +++++SW +I+ GL  N R  E L +F   ++  L P+
Sbjct: 459 IPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPN 497



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 205/413 (49%), Gaps = 16/413 (3%)

Query: 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGL 175
           + G  + G  + A+++ + MQ   V      F  L+       +   G +++ S+  S +
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVY-SIALSSM 124

Query: 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFY 235
           S   V LGN+ + M+ + G L  A+ VF  M E ++ SWN L+ G    GY + A+  ++
Sbjct: 125 SSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYH 184

Query: 236 SMRY-SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294
            M +  G  PD YT   V+  C  + +L +GK+V    V+ G+  +  V++A I ++ KC
Sbjct: 185 RMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKC 244

Query: 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
             ++ +  LF+++ R D    N MIS Y   G     LELF  M    + P   TL+ V+
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304

Query: 355 SSIPIPPVEH-GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV 413
           S+  +      G   H+  I +GF  +  V +SL +MY   GS   + ++F +++++D+V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364

Query: 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM----LV 469
           SW T++ G   N    + +D +  + ++ + PD IT+AAVL AC   G +D G+    L 
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424

Query: 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
             A    Y ++        +I++  +   + KA+DI   +P +   S W SI+
Sbjct: 425 IKARLISYVIVANN-----LINMYSKCKCIDKALDIFHNIPRKNVIS-WTSII 471



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 191/449 (42%), Gaps = 50/449 (11%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S C  L DR L        + IH ++   GF     + N    +Y   G+  +  +LF 
Sbjct: 304 ISACELLGDRRL-------GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFS 356

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            + +K                               D+VSW +MISGY      D A++ 
Sbjct: 357 RMERK-------------------------------DIVSWTTMISGYEYNFLPDKAIDT 385

Query: 135 FSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +  M    V+P   T + +LS   T+     G ++H   I++ L +S V++ N+LI+MY 
Sbjct: 386 YRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL-ISYVIVANNLINMYS 444

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251
           K   +  A  +F N+   ++ISW S+I+G   +     AL     M+ +   P+  T++ 
Sbjct: 445 KCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTA 503

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
            + AC ++  L  GK++ A  ++ G   +  + +A +D++ +C R+  +   F    + D
Sbjct: 504 ALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKK-D 562

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
               N++++ Y   G G + +ELF  M++  +RP E T   +L        V  G  + S
Sbjct: 563 VTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFS 622

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAA 429
                G   N    + ++++  + G +  + +   K+    D   W  ++       R  
Sbjct: 623 KMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNAC----RIH 678

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACN 458
             +D+ E   +     D+ ++   +L CN
Sbjct: 679 HKIDLGELSAQHIFELDKKSVGYYILLCN 707


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 268/479 (55%), Gaps = 3/479 (0%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           GK  HG  I  GL +++ V  N LI++Y K G    A  VF  M    IISWN++I+G  
Sbjct: 75  GKSCHGLAIHFGL-VTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYT 133

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
           ++     AL  F  M   G    E+T+S  + AC     + + KQ+  +++K+   S+S 
Sbjct: 134 HNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSF 193

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A +D+++KCN ++D+  +FE +        + + + + + G  E  L LFQ   RE 
Sbjct: 194 VGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREG 253

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           ++ TEFT+S +LS+   +  +  G+Q H++ +K GF  N  VA+SL+++YAK G I+ S 
Sbjct: 254 MQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSY 313

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
           E+F  ++++++V WN ++   +++  + E + +FE++ + G+ P+ +T  ++L AC++ G
Sbjct: 314 EVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTG 373

Query: 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521
            V++G   F+ +  +    P   HY+C++D+L ++G+  +A  +   MPF+P  S+W S+
Sbjct: 374 LVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSL 433

Query: 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581
           L +S I+ +++L    AE++  L+  +   + LL+  YA  G WE +V  +K +R +G  
Sbjct: 434 LGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAK 493

Query: 582 KVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED-EGCVYLECDKLDVEG 639
           K  G SWI  K +I+ F AGE +H G   +Y  L  +  EM         +CD  DV  
Sbjct: 494 KEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHA 552



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 188/393 (47%), Gaps = 37/393 (9%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L+  C   +S    K+ HG     G    T   N  ++LY++ G +D            
Sbjct: 61  ELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQND------------ 108

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                  C R            +VFD +    ++SWN+MI+GY        AL++FS+M 
Sbjct: 109 -------CAR------------RVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 140 LQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
            +G + + FT S  L   ++       KQ+H   I+  L  S+ V G + +D+Y K  ++
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFV-GTAFLDVYAKCNMI 208

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  VF NM E   ++W+SL +G   +G  E  L  F S +  G    E+T+S +++ C
Sbjct: 209 KDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTC 268

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
             L  + +G QV A+ VK GF  N  V ++ +D+++KC ++E S  +F  ++  +  + N
Sbjct: 269 ASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWN 328

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKS 375
            MI+++ R+     A+ LF+ M +  I P E T   +LS+      VE G  + ++ +  
Sbjct: 329 AMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSD 388

Query: 376 -GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
              + N +  S ++++  ++G  D + ++  K+
Sbjct: 389 RTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKM 421



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 159/321 (49%), Gaps = 4/321 (1%)

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D +T+  ++  C K R+L  GK    L++  G +++++  +  I+L++KC + + + R+F
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVE 363
           + +        N MI+ Y        AL+LF  M RE  + TEFTLS  L +      + 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423
              Q H++AIK   DS++ V ++ +++YAK   I  +  +F  + ++  V+W+++  G  
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           QNG   E L +F+    EG+     T++++L  C     + +G  V + +  ++G     
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIV-KHGFHRNL 293

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
                ++D+  + GQ+ K+ ++ + M  +    +W +++ + + +        + E+M  
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIASFSRHAHSWEAMILFEKMQQ 352

Query: 544 LQL-PSPLPYSLLTQAYAMRG 563
           + + P+ + Y  +  A +  G
Sbjct: 353 VGIFPNEVTYLSILSACSHTG 373



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C S         +H  + K GF+ + ++    +D+Y++ G  +   ++F ++ +
Sbjct: 262 SSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEE 321

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN                               VV WN+MI+ ++   +S  A+ +F KM
Sbjct: 322 KN-------------------------------VVLWNAMIASFSRHAHSWEAMILFEKM 350

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           Q  G+ P+  T+  +LS  S       G+     ++    +  NV+  + ++D+ G+ G 
Sbjct: 351 QQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGK 410

Query: 196 LYYAFGVFLNME-ELDIISWNSLI 218
              A+ +   M  E     W SL+
Sbjct: 411 TDEAWKLLDKMPFEPTASMWGSLL 434


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 164/592 (27%), Positives = 301/592 (50%), Gaps = 54/592 (9%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++D C +       K+ H  + + GF+++ ++GN  +++Y + G+               
Sbjct: 234 VVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGS--------------- 278

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                           +D A  VF+++   +VVSW  MI  YA  G+   A +++ +M  
Sbjct: 279 ----------------VDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDC 322

Query: 141 QGVRPSGFTFSILLSTV---SSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +   P+  TF  ++ +          +QIH  M+ SG   S+ VL   L+ MYGK G + 
Sbjct: 323 E---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFD-SDAVLQVCLVTMYGKCGSVD 378

Query: 198 YAFGVFLNMEEL--DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
            A+ +F N++E   + ++WN++ISG    G  + AL+ F+ M   G  P+  T    + A
Sbjct: 379 SAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEA 438

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C+ L +L +G+Q+ A  + +  +  + + +A I+++ KC  L++++  F ++   D    
Sbjct: 439 CSSLNDLTRGRQLHA-RILLENIHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSW 497

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIK 374
           N MI+TY ++G G  ALE F+ M  E       T L  + +   +P +  G   HS+   
Sbjct: 498 NTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKTIHSIVAT 557

Query: 375 SG--FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL 432
           +    + +  VA++L+ MYA+ GS+  +  +F +   R+LV+W+ ++    Q+GR  E L
Sbjct: 558 AAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEAL 617

Query: 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492
           D+F E+  +G  PD +T + ++ AC+  G V  G+  F +M E+Y +   E+H+  ++DL
Sbjct: 618 DLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGVFYFVSMVEDYSIPASEDHFGGMVDL 677

Query: 493 LCQAGQLGKAIDITSTMPFQPGCSIWESI-LRASAIYGDVKLTENVAERMMDLQLPSPLP 551
           L +AG L +A  +    P    C++  ++ L A  ++GDV+    +A+  ++L   +   
Sbjct: 678 LGRAGWLEEAEQVMRKNP----CALAHAVLLGACHVHGDVERGIRIAQSALELDWKNSAS 733

Query: 552 Y----SLLTQAYAMRGRWEAIVRVKK-VMRKNGINKVTGCSWIGIKNRIYTF 598
           +    ++L + Y   GRWE   RV+K V  +N   +  G SWI +KNR++ F
Sbjct: 734 FAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVKNRVHEF 785



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 271/532 (50%), Gaps = 47/532 (8%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           LKK+  +     Y S L+ +C   KS    K +H H+   G   + Y+ N  + +Y++ G
Sbjct: 17  LKKSSESLQPARYAS-LLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCG 75

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                                           L+ AL+VF+ +P P+V SW ++I+ YA 
Sbjct: 76  C-------------------------------LEDALEVFELLPNPNVFSWTALITAYAK 104

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVV 181
            G+    L +F KMQL G +P  F FS +L+  SSA     GK IH   + +G+     V
Sbjct: 105 EGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQ--V 162

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           +GN+++++YGK G ++ A  VF  + E +++SWN+LI+    +G+ + A+  F+ M   G
Sbjct: 163 VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDG 222

Query: 242 -YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
              P++ T   V++AC+ L +L +GK      ++ GF S   V ++ ++++ KC  ++ +
Sbjct: 223 SVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRA 282

Query: 301 VRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360
             +FE++   +     VMI  Y + GF   A +L++ M   D  P   T   V+ S   P
Sbjct: 283 RLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRP 339

Query: 361 P-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNT 417
             +    Q H+  + SGFDS+AV+   L+ MY K GS+DS+  IF  L +R  + V+WN 
Sbjct: 340 EDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNA 399

Query: 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477
           ++ GL Q+G + + L+ F ++  EG+ P+ +T  A L AC+    + +G  + + +  E 
Sbjct: 400 MISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLE- 458

Query: 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            +       A +I++  + G L +A+D  + MP +   S W +++   A +G
Sbjct: 459 NIHEANLSNA-VINMYGKCGSLDEAMDEFAKMPERDVVS-WNTMIATYAQHG 508



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 186/381 (48%), Gaps = 17/381 (4%)

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
           SA  GK +H  ++ SG  + N  + N LI MY K G L  A  VF  +   ++ SW +LI
Sbjct: 41  SAAAGKLVHQHILSSGCGV-NRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALI 99

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +     G+    L  F  M+  G  PD +  S V+ AC+    L++GK +   +V  G +
Sbjct: 100 TAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAG-M 158

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
              +V +A ++L+ KC R+ ++  +FE+L   +    N +I+   + G  + A+++F LM
Sbjct: 159 ETQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLM 218

Query: 339 -LREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396
            L   +RP + T   V+ +   +  +  G   H   I++GFDS   V +SL+ MY K GS
Sbjct: 219 DLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGS 278

Query: 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456
           +D +  +F K+  R++VSW  ++    Q G      D+++ +  E   P+ +T  AV+ +
Sbjct: 279 VDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PNAVTFMAVMDS 335

Query: 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA----CIIDLLCQAGQLGKAIDITSTMPFQ 512
           C     + +   + + M     V  G +  A    C++ +  + G +  A  I   +  +
Sbjct: 336 CLRPEDLPRAEQIHAHM-----VASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKER 390

Query: 513 PGCSI-WESILRASAIYGDVK 532
              ++ W +++   A +G+ K
Sbjct: 391 SNNAVTWNAMISGLAQHGESK 411



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 168/411 (40%), Gaps = 79/411 (19%)

Query: 10  VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAH-TYLGNRCLDLYSRFGTSDD 68
           V   S++Y + L + C S       + +H  +  L  N H   L N  +++Y + G+ D+
Sbjct: 425 VRPNSVTYLASL-EACSSLNDLTRGRQLHARI--LLENIHEANLSNAVINMYGKCGSLDE 481

Query: 69  VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128
            +  F ++P+++ +S                               WN+MI+ YA  G  
Sbjct: 482 AMDEFAKMPERDVVS-------------------------------WNTMIATYAQHGSG 510

Query: 129 DYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLSL-SNVVLGN 184
             ALE F +M L+G      T+   +    +V S   GK IH  +  +   L  +  +  
Sbjct: 511 RQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVAT 570

Query: 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244
           +L+ MY + G L+ A  VF      ++++W++LI+ C   G    ALD F  M+  G  P
Sbjct: 571 ALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKP 630

Query: 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLF 304
           D  T S ++ AC++   +  G   F   V+         + A+ D F             
Sbjct: 631 DALTFSTLVAACSRRGVVKDGVFYFVSMVE------DYSIPASEDHFGG----------- 673

Query: 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVE 363
                        M+   GR G+    LE  + ++R++  P     + +L +  +   VE
Sbjct: 674 -------------MVDLLGRAGW----LEEAEQVMRKN--PCALAHAVLLGACHVHGDVE 714

Query: 364 HGSQFHSMAIKSGFDSNAVVASS---LMEMYAKTGSIDSSTEIFVKLDKRD 411
            G +    A++  + ++A  A+S   L E+Y   G  + +  +   ++ R+
Sbjct: 715 RGIRIAQSALELDWKNSASFAASMAMLAELYGAAGRWEDAARVRKAVESRN 765



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G   H   + SG   N  + + L+ MYAK G ++ + E+F  L   ++ SW  ++    +
Sbjct: 45  GKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAK 104

Query: 425 NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484
            G   E L +F ++  +G  PD    + VL AC+  G +++G  +      +  V+ G E
Sbjct: 105 EGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAI-----HDCAVLAGME 159

Query: 485 HYA---CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541
                  I++L  + G++ +A  +   +P +   S W +++ A+A  G  K    V   +
Sbjct: 160 TQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVS-WNALIAANAQNGHCKDAMQVFH-L 217

Query: 542 MDL 544
           MDL
Sbjct: 218 MDL 220


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 287/563 (50%), Gaps = 57/563 (10%)

Query: 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQI 166
           P ++ +N M+   A        L +F +++ QG+ P  FT  ++L ++        G+++
Sbjct: 9   PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68

Query: 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGY 226
           HG  +++GL   + V  NSL+ MY  LG +     VF  M + D++SWN LIS    +G 
Sbjct: 69  HGYAVKAGLEFDSYV-SNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGR 127

Query: 227 GELALDQFYSM-RYSGYSPDEYTISIVINACTKLRNLDKGKQV-------FALSVKVGFL 278
            E A+  F  M + S    DE TI   ++AC+ L+NL+ G+++       F +SV++G  
Sbjct: 128 FEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG-- 185

Query: 279 SNSIVLSATIDLFSKCNRLE------DSVR-------------------------LFEQL 307
                 +A +D+F KC  L+      DS+R                         LFE+ 
Sbjct: 186 ------NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERS 239

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
              D  +   M++ Y ++   + ALELF+ M    IRP  F L  +L+       +E G 
Sbjct: 240 PVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGK 299

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
             H    ++    + VV ++L++MYAK G I+++ E+F ++ +RD  SW +++ GL  NG
Sbjct: 300 WIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNG 359

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
            +   LD++ E+   G+  D IT  AVL ACN+GGFV +G  +F +M E + V P  EH 
Sbjct: 360 MSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHC 419

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPG---CSIWESILRASAIYGDVKLTENVAERMMD 543
           +C+IDLLC+AG L +A ++   M  +       ++ S+L A+  YG+VK+ E VAE++  
Sbjct: 420 SCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEK 479

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGE- 602
           +++     ++LL   YA   RWE +  V++ M+  GI K  GCS I I    + F  G+ 
Sbjct: 480 VEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDD 539

Query: 603 -LQHHGGQKIYLVLRLLTWEMED 624
            L H    +I  +L   T  M D
Sbjct: 540 LLSHPKMDEINSMLHQTTNLMLD 562



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 13/299 (4%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++LS CS L +  +  + + F  T         F     +GN  +D++ + G  D    +
Sbjct: 153 STLSACSALKNLEIGERIYRFVVT--------EFEMSVRIGNALVDMFCKCGCLDKARAV 204

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD +  KN   W   + G + +  +D A  +F+  P  DVV W +M++GY      D AL
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264

Query: 133 EMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           E+F  MQ  G+RP  F    LL+  +       GK IHG +  + +++  VV G +L+DM
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVV-GTALVDM 323

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  VF  ++E D  SW SLI G   +G    ALD +Y M   G   D  T 
Sbjct: 324 YAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITF 383

Query: 250 SIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             V+ AC     + +G+++F +++ +      S   S  IDL  +   L+++  L +++
Sbjct: 384 VAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKM 442



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 177/414 (42%), Gaps = 76/414 (18%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            + +HG+  K G    +Y+ N  + +Y+  G  +   ++FDE+PQ++ +SW         
Sbjct: 65  GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSW--------- 115

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSIL 153
                                 N +IS Y   G  + A+ +F +M  +      F    +
Sbjct: 116 ----------------------NGLISSYVGNGRFEDAIGVFKRMSQES--NLKFDEGTI 151

Query: 154 LSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206
           +ST+ SAC        G++I+   + +   +S V +GN+L+DM+ K G L  A  VF +M
Sbjct: 152 VSTL-SACSALKNLEIGERIY-RFVVTEFEMS-VRIGNALVDMFCKCGCLDKARAVFDSM 208

Query: 207 EELDIISWNSLISGCFNS--------------------------GYGEL-----ALDQFY 235
            + ++  W S++ G  ++                          GY +      AL+ F 
Sbjct: 209 RDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFR 268

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            M+ +G  PD + +  ++  C +   L++GK +     +     + +V +A +D+++KC 
Sbjct: 269 CMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCG 328

Query: 296 RLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355
            +E ++ +F ++   D A    +I      G    AL+L+  M    +R    T   VL+
Sbjct: 329 CIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLT 388

Query: 356 SIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
           +      V  G + FHSM  +      +   S L+++  + G +D + E+  K+
Sbjct: 389 ACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKM 442


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/506 (30%), Positives = 283/506 (55%), Gaps = 19/506 (3%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y++ G  ++  ++F+ + ++N +SWN  + G +++ +L  A K+FDE+PE +V SWNS++
Sbjct: 111 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVV 170

Query: 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS---TVSSACHGKQIHGSMIRSGLS 176
           +GY  C     A E+F +M  +    +  ++ +++S    +S       +   M R+   
Sbjct: 171 TGYCHCYRMSEARELFDQMPER----NSVSWMVMISGYVHISDYWEAWDVFVKMCRT--- 223

Query: 177 LSNVVLGNSLIDMYGKLGVLYYAFGVFLNM-EELDIISWNSLISGCFNSGYGELALDQFY 235
             N     ++I  + + G L  A  ++  + E+ +  SW ++I+G   +     AL+   
Sbjct: 224 -RNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLI 282

Query: 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295
            +  SG  P + + +  ++AC  + +++ G+ + +L++K G   NS V++  I +++KC 
Sbjct: 283 ELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCG 342

Query: 296 RLEDSVRLFE--QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
            +ED   +F   ++ + D      +IS Y + G GEVAL+LF  ML   I+P + T++ +
Sbjct: 343 NVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSL 402

Query: 354 LSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LS+   +  ++ G QFH++  K GFD+   V +SL+ MY K G  D    +F ++ + DL
Sbjct: 403 LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPEHDL 461

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472
           ++WN +++G  QNG   E + +FE++  EG+ PD+++   VL AC++ G VD+G   F++
Sbjct: 462 ITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNS 521

Query: 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532
           M ++YG+MP   HY C++DLL +AG L +A  +   MP +P   IWE++L A  I+ + +
Sbjct: 522 MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNNE 581

Query: 533 L---TENVAERMMDLQLPSPLPYSLL 555
           L   +E +A     L  P+  P  ++
Sbjct: 582 LLYHSEKLAVVFGILSTPNGSPIQII 607



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 123/271 (45%), Gaps = 32/271 (11%)

Query: 288 IDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE 347
           I    +  R+E++ R+F ++ + D    N MI+ Y + G  + A  LF   + ++IR   
Sbjct: 46  IQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWT 105

Query: 348 FTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407
             L+       I   E    F SM      + N V  ++++  Y + G + ++ ++F ++
Sbjct: 106 ILLTGYAKEGRIE--EAREVFESMT-----ERNVVSWNAMISGYVQNGDLKNARKLFDEM 158

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD--K 465
            ++++ SWN+++ G     R +E  ++F+++      P+R +++ +++   Y    D  +
Sbjct: 159 PEKNVASWNSVVTGYCHCYRMSEARELFDQM------PERNSVSWMVMISGYVHISDYWE 212

Query: 466 GMLVFSAM---KEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
              VF  M   + EY        +  +I    Q G+L  AI +   +P Q   + W    
Sbjct: 213 AWDVFVKMCRTRNEYS-------WTTMIAAFAQCGRLDDAIQLYERVPEQTNSASW---- 261

Query: 523 RASAIYGDVKLTEN--VAERMMDLQLPSPLP 551
            A+ I G V+  E+    E +++L     +P
Sbjct: 262 -AAMIAGFVQNEESREALELLIELHRSGSVP 291



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 36/207 (17%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C +  +    +  H  +FKLGF+   ++GN  + +Y + G  D    +F+E+P+
Sbjct: 400 TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC-VFEEMPE 458

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
            + I+WN                               +++ G A  G    A+++F +M
Sbjct: 459 HDLITWN-------------------------------AVLVGCAQNGLGKEAIKIFEQM 487

Query: 139 QLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
           +++G+ P   +F  +L   S A     G     SM +    +  V     ++D+ G+ G 
Sbjct: 488 EVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGY 547

Query: 196 LYYAFGVFLNME-ELDIISWNSLISGC 221
           L  A  +  NM  + D + W +L+  C
Sbjct: 548 LSEAEALIENMPVKPDSVIWEALLGAC 574



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429
           S+ I+    ++    ++ ++   + G ++ +  +F ++ +RD+VSWN+++ G +QNG+  
Sbjct: 28  SLPIQETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVD 87

Query: 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489
           E   +F+  + + +     T   +L      G +++   VF +M E   V      +  +
Sbjct: 88  EARLLFDAFVGKNIR----TWTILLTGYAKEGRIEEAREVFESMTERNVV-----SWNAM 138

Query: 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           I    Q G L  A  +   MP +   + W S++
Sbjct: 139 ISGYVQNGDLKNARKLFDEMP-EKNVASWNSVV 170


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 159/527 (30%), Positives = 268/527 (50%), Gaps = 8/527 (1%)

Query: 108 PEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CH-- 162
           P P VVS+ + ISG A       AL  F+ M   G+RP+ FTF       +SA   C   
Sbjct: 76  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAA 135

Query: 163 -GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H   +R G    +  +  + +DMY K G L  A  +F  M   ++++WN++++  
Sbjct: 136 VGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNA 195

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
              G     ++ ++ +R +G  P+  ++    NAC  +  L  G+Q      K GF  + 
Sbjct: 196 VLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDV 255

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V ++ +D + KC  +  +  +F+ +   +      M+  Y + G  E A  ++    R 
Sbjct: 256 SVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRA 315

Query: 342 DIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
              PT+F +S +L++   +  ++ G   H++A +S  D+N  VAS+L++MY K G I  +
Sbjct: 316 GEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDA 375

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAVLLACNY 459
            ++F ++ +R+LV+WN ++ G    G A   L VF+E+ +     P+ IT+  VL AC+ 
Sbjct: 376 EQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLTACSR 435

Query: 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
           GG   +G  +F  MK+ +G+ P  EHYAC++DLL +AG   +A +I   MP +P  S+W 
Sbjct: 436 GGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWG 495

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           ++L    ++G  +L    AE++ +L       + LL+   A  GRW     V+K M+  G
Sbjct: 496 ALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVG 555

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           I K  G SWI  KN ++ F A +  H    +I  +L  L  +M+  G
Sbjct: 556 IKKDPGRSWITWKNIVHVFQAKDTTHEMNSEIQALLAKLKGQMQGAG 602



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 179/410 (43%), Gaps = 36/410 (8%)

Query: 37  IHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL-RGLLKS 94
           +H    + G+     ++    LD+Y + G      +LFDE+P +N ++WN  +   +L  
Sbjct: 140 VHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDG 199

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             ++T    F       + +  S+ + + +C                    +G T   L 
Sbjct: 200 RPIETVEAYFGLRGAGGMPNVVSVCAFFNAC--------------------AGMTCLSL- 238

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
                   G+Q HG + + G    +V + NS++D YGK   +  A  VF  M   + +SW
Sbjct: 239 --------GEQFHGFVAKCGFD-KDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSW 289

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S++     +G  E A   +   R +G  P ++ +S ++  C  L  LD G+ + A++ +
Sbjct: 290 CSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAAR 349

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
               +N  V SA +D++ KC  ++D+ ++F ++ + +    N MI  Y   G    AL +
Sbjct: 350 SCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAV 409

Query: 335 F-QLMLREDIRPTEFTLSCVLSSIPIPPV--EHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
           F ++++  +  P   T+  VL++     +  E    F +M  + G +      + ++++ 
Sbjct: 410 FDEMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLL 469

Query: 392 AKTGSIDSSTEIFVKLDKRDLVS-WNTIMMGLTQNGRAAETLDVFEELLE 440
            + G  + + EI   +  R  +S W  ++ G   +G+        E+L E
Sbjct: 470 GRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTELGRVAAEKLFE 519



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 139/333 (41%), Gaps = 43/333 (12%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           +S C+   + C         +  HG + K GF+    + N  +D Y              
Sbjct: 221 VSVCA-FFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYG------------- 266

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
                             K   +  A  VFD +   + VSW SM+  YA  G  + A  +
Sbjct: 267 ------------------KCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLV 308

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191
           +   +  G  P+ F  S LL+T +       G+ +H    RS +  +N+ + ++L+DMYG
Sbjct: 309 YLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCID-ANIFVASALVDMYG 367

Query: 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG-YSPDEYTIS 250
           K G +  A  VF  M + ++++WN++I G  + G    AL  F  M      +P+  TI 
Sbjct: 368 KCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIV 427

Query: 251 IVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD- 308
            V+ AC++     +G ++F  +  + G        +  +DL  +    E +  + + +  
Sbjct: 428 NVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPM 487

Query: 309 RWDYAVINVMI---STYGRYGFGEVALE-LFQL 337
           R   +V   ++     +G+   G VA E LF+L
Sbjct: 488 RPSISVWGALLGGCKMHGKTELGRVAAEKLFEL 520


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 169/540 (31%), Positives = 287/540 (53%), Gaps = 17/540 (3%)

Query: 103 VFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC- 161
           VFD +   +V  WNS+I+G       + A ++F++M    V P  FT S L S VSS   
Sbjct: 80  VFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTL-SKVSSELG 138

Query: 162 ---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GK IHG  IR+G  +S+ V+ NS++ MY K G    +  VF  M   +  SWN LI
Sbjct: 139 ALFSGKSIHGKSIRTGF-VSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLI 197

Query: 219 SGCFNSG---YGELALDQFYSMRYSGYSPDEYTISIVINACT-KLRNLDKGKQVFALSVK 274
           +G   SG   + E   +    M+     PD YTIS ++  C   +   D G+++    VK
Sbjct: 198 AGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVK 257

Query: 275 ----VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330
               +G  S+  +    ID++S+ N++    R+F+++   +      MI+ Y   G  + 
Sbjct: 258 NELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDE 317

Query: 331 ALELFQLMLRED-IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
           AL LF+ M   D + P   +L  VL +      +  G Q H  A++   ++   + ++L+
Sbjct: 318 ALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALI 377

Query: 389 EMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447
           +MY+K GS+DS+  +F      +D +SW++++ G   +G+  E + +++++L+ G+ PD 
Sbjct: 378 DMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDM 437

Query: 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           IT   +L AC   G V++G+ ++S++  +YG+ P  E  ACI+D+L +AGQL +A+D   
Sbjct: 438 ITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIK 497

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            +P +PG S+W +++  S I+GD+++ E     ++ L+  +P  Y  ++  YA   RW+A
Sbjct: 498 AIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDA 557

Query: 568 IVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627
           +  V+++M+   + KV GCSWI I N+ + F   +  H     IY +L  L   M D  C
Sbjct: 558 VAEVRRMMKDKRLRKVPGCSWISINNKTHCFYVADKAHPSSTSIYNMLDDLLLTMNDAIC 617



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 190/379 (50%), Gaps = 18/379 (4%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           +Q H  ++  GLS  N  L   LI  Y      Y++  VF +++  ++  WNSLI+GC  
Sbjct: 43  RQSHSRILSLGLS-QNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVK 101

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
           +     A   F  M  S   PD++T+S +    ++L  L  GK +   S++ GF+S+++V
Sbjct: 102 NRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVV 161

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY---GRYGFGEVALELFQLMLR 340
            ++ + ++ KC   ++S ++F+++   +    NV+I+ Y   G   F E   E  + M  
Sbjct: 162 ANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQM 221

Query: 341 EDIRPTEFTLSCVLSSI--PIPPVEHGSQFHSMAIKS----GFDSNAVVASSLMEMYAKT 394
           +++RP  +T+S +L      +   ++G + H   +K+    G DS+  +   L++MY+++
Sbjct: 222 DEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRS 281

Query: 395 GSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITLAAV 453
             +     +F ++  R++ SW  ++ G  +NG + E L +F ++ + +G+ P+R++L +V
Sbjct: 282 NKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSV 341

Query: 454 LLAC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--IIDLLCQAGQLGKAIDITSTMP 510
           L AC ++ G +    +   A+++E       E   C  +ID+  + G L  A  +     
Sbjct: 342 LPACSSFSGLLSGRQIHGFAVRKEL----NNEVSLCNALIDMYSKCGSLDSARRVFEDDS 397

Query: 511 FQPGCSIWESILRASAIYG 529
                  W S++    ++G
Sbjct: 398 LCKDAISWSSMISGYGLHG 416



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 184/387 (47%), Gaps = 46/387 (11%)

Query: 34  AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLK 93
            K+IHG   + GF + T + N  + +Y + G  D+  ++FDE+  +N  SWN+       
Sbjct: 143 GKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNV------- 195

Query: 94  SDNLDTALKVFDEIPEPDVVSWNSMISGYA---SCGYSDYALEMFSKMQLQGVRPSGFTF 150
                                   +I+GYA   +C + +   E   +MQ+  VRP  +T 
Sbjct: 196 ------------------------LIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTI 231

Query: 151 SILLSTVSSAC----HGKQIHGSMIRSGLSL---SNVVLGNSLIDMYGKLGVLYYAFGVF 203
           S LL           +G+++H  ++++ L L   S+V LG  LIDMY +   +     VF
Sbjct: 232 SSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVF 291

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNL 262
             M+  ++ SW ++I+G   +G  + AL  F  M+   G  P+  ++  V+ AC+    L
Sbjct: 292 DRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGL 351

Query: 263 DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI-NVMIST 321
             G+Q+   +V+    +   + +A ID++SKC  L+ + R+FE       A+  + MIS 
Sbjct: 352 LSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISG 411

Query: 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKS-GFDS 379
           YG +G G+ A+ L+  ML+  IRP   T   +LS+      V  G   +S  I   G + 
Sbjct: 412 YGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEP 471

Query: 380 NAVVASSLMEMYAKTGSIDSSTEIFVK 406
              + + +++M  + G +D + + F+K
Sbjct: 472 TLEICACIVDMLGRAGQLDRALD-FIK 497



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 103/203 (50%), Gaps = 4/203 (1%)

Query: 260 RNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMI 319
           ++L   +Q  +  + +G   NS + +  I  ++ C     S  +F+ L   +  + N +I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 320 STYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFD 378
           +   +      A +LF  M   D+ P +FTLS +   S  +  +  G   H  +I++GF 
Sbjct: 97  NGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFV 156

Query: 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA---AETLDVF 435
           S+ VVA+S+M MY K G+ D S ++F ++  R+  SWN ++ G   +G      ET +  
Sbjct: 157 SDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFV 216

Query: 436 EELLEEGLPPDRITLAAVLLACN 458
           +++  + + PD  T++++L  C+
Sbjct: 217 KQMQMDEVRPDAYTISSLLPLCD 239



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 33/179 (18%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C SF      + IHG   +   N    L N  +D+YS+ G+ D   ++F++         
Sbjct: 345 CSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFED--------- 395

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
                        D+  K        D +SW+SMISGY   G    A+ ++ KM   G+R
Sbjct: 396 -------------DSLCK--------DAISWSSMISGYGLHGKGQEAILLYDKMLQAGIR 434

Query: 145 PSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200
           P   T   +LS    +     G  I+ S+I        + +   ++DM G+ G L  A 
Sbjct: 435 PDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRAL 493


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 159/499 (31%), Positives = 260/499 (52%), Gaps = 5/499 (1%)

Query: 102 KVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161
           KVFDE+   ++VSW  +IS YA  G  + A+ +FS MQ  G+RP+   +  LL +     
Sbjct: 143 KVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPS 202

Query: 162 H---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               GKQ+H  +IR+ L+ +N+ +  ++ +MY + G L  A  VF  M+  + ++W  L+
Sbjct: 203 FLELGKQMHSHVIRAQLN-ANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
            G   +   E+AL+ F  M   G   DE+  SIV+  C  L + D GKQ+ +  VK+G  
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXE 321

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
           S   V +  +D + KC  +E + R F ++   +    + +IS + + G  E  +++F  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSL 381

Query: 339 LREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
             E +    F  + V  +      +  GSQ H  AIK G  S     S+++ MY+K G +
Sbjct: 382 RSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRL 441

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D +   F  +D+ D V+W  I+ G   +G AAE L  F  +   G+ P+ +T  AVL AC
Sbjct: 442 DYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTAC 501

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSI 517
           ++ G V +      +M  +YGV P  +HY C+ID   +AG L +A+++ + MPF+P    
Sbjct: 502 SHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMS 561

Query: 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577
           W+S+L     + D+KL +  AE +  L       Y LL   Y+  G+WE    V+K+M +
Sbjct: 562 WKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAE 621

Query: 578 NGINKVTGCSWIGIKNRIY 596
             + K   CSWI +K +++
Sbjct: 622 RELKKEVSCSWISVKGQVH 640



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 175/381 (45%), Gaps = 6/381 (1%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+ IH  + R+  + S  +  N L+ MY   G       VF  M   +++SW  +IS   
Sbjct: 106 GRLIHDRLRRTVKNPSGSI-ENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYA 164

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
            +G  E A+  F  M+ SG  P+      ++ +C     L+ GKQ+ +  ++    +N  
Sbjct: 165 KNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANIT 224

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V +A  +++ +C  LE +  +F+ +D  +      ++  Y +    EVALELF  M  E 
Sbjct: 225 VETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEG 284

Query: 343 IRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +   EF  S VL     +   + G Q HS  +K G +S   V + L++ Y K G I+S+ 
Sbjct: 285 VELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAY 344

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461
             F ++ + + VSW+ ++ G +Q+GR  + + +F  L  EG+  +     +V  AC    
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404

Query: 462 FVDKGMLVF-SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
            ++ G      A+K   G++      + ++ +  + G+L  A     ++  +P    W +
Sbjct: 405 NLNMGSQAHGDAIKR--GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTA 461

Query: 521 ILRASAIYGDVKLTENVAERM 541
           I+   A +G+         RM
Sbjct: 462 IISGYAYHGNAAEALGFFRRM 482



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 130/317 (41%), Gaps = 65/317 (20%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C   + +D  K IH H+ KLG  +   +G   +D Y + G  +   + F  I + N +SW
Sbjct: 299 CCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           +  + G  +S  L+  +K+                               F+ ++ +GV 
Sbjct: 359 SALISGFSQSGRLEDCIKI-------------------------------FTSLRSEGVV 387

Query: 145 PSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201
            + F ++ +    ++  +   G Q HG  I+ GL +S +   ++++ MY K G L YA  
Sbjct: 388 LNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGL-VSYLYGESAMVTMYSKCGRLDYARR 446

Query: 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRN 261
            F +++E D ++W ++ISG    G    AL  F  M+  G  P+  T   V+ AC+    
Sbjct: 447 AFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGL 506

Query: 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321
           + + KQ       +G +S    +  TID +                        + MI T
Sbjct: 507 VAEAKQY------LGSMSRDYGVKPTIDHY------------------------DCMIDT 536

Query: 322 YGRYGFGEVALELFQLM 338
           Y R G    ALEL   M
Sbjct: 537 YSRAGLLXEALELINRM 553



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K   LD A + F+ I EPD V+W ++ISGYA  G +  AL  F +MQ  GVRP+  TF  
Sbjct: 437 KCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIA 496

Query: 153 LLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-E 208
           +L+  S +      KQ  GSM R       +   + +ID Y + G+L  A  +   M  E
Sbjct: 497 VLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFE 556

Query: 209 LDIISWNSLISGCF 222
            D +SW SL+ GC+
Sbjct: 557 PDAMSWKSLLGGCW 570


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 160/550 (29%), Positives = 284/550 (51%), Gaps = 20/550 (3%)

Query: 68  DVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127
           D  +LFDE+P +N ISWN  + G +K+  +D A KVFD +PE +VVSW +++ GY   G 
Sbjct: 66  DARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGK 125

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
            D A  +F KM      P     S  +  +     G+      +   +   + +   S+I
Sbjct: 126 VDVAESLFWKM------PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMI 179

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
               K G +  A  +F  M E  +I+W ++++G   +   + A   F  M      P++ 
Sbjct: 180 HGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM------PEKT 233

Query: 248 TISIVINACTKLRN--LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFE 305
            +S        ++N  ++  +++F    +V  +   I  +A I    +   +  + R+F+
Sbjct: 234 EVSWTSMLMGYVQNGRIEDAEELF----EVMPVKPVIACNAMISGLGQKGEIAKARRVFD 289

Query: 306 QLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS-SIPIPPVEH 364
            +   + A    +I  + R GF   AL+LF LM ++ +RPT  TL  +LS    +  + H
Sbjct: 290 SMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHH 349

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQ 424
           G Q H+  ++  FD +  VAS LM MY K G +  S  IF +   +D++ WN+I+ G   
Sbjct: 350 GKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYAS 409

Query: 425 NGRAAETLDVFEEL-LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483
           +G   E L VF E+ L     P+ +T  A L AC+Y G V++G+ ++ +M+  +GV P  
Sbjct: 410 HGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPIT 469

Query: 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMD 543
            HYAC++D+L +AG+  +A+++  +M  +P  ++W S+L A   +  + + E  A+++++
Sbjct: 470 AHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIE 529

Query: 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGEL 603
           ++  +   Y LL+  YA +GRW  +  ++K+M+   + K  GCSW  ++N+++ F  G +
Sbjct: 530 IEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589

Query: 604 QHHGGQKIYL 613
             H  Q+  L
Sbjct: 590 NSHPEQESIL 599



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 182/407 (44%), Gaps = 35/407 (8%)

Query: 60  YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMI 119
           Y   G  D    LF ++P+KN +SW + L G L+   +D A K+++ IP+ D ++  SMI
Sbjct: 120 YVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMI 179

Query: 120 SGYASCGYSDYALEMFSKM-------------------------QLQGVRPSGFTFSILL 154
            G    G  D A E+F +M                         ++  V P     S   
Sbjct: 180 HGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTS 239

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
             +    +G+      +   + +  V+  N++I   G+ G +  A  VF +M+E +  SW
Sbjct: 240 MLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASW 299

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            ++I     +G+   ALD F  M+  G  P   T+  +++ C  L +L  GKQV A  V+
Sbjct: 300 QTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR 359

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
             F  +  V S  + ++ KC  L  S  +F++    D  + N +IS Y  +G GE AL++
Sbjct: 360 CQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKV 419

Query: 335 F-QLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVA--SSLMEM 390
           F ++ L    +P E T    LS+      VE G + +  +++S F    + A  + +++M
Sbjct: 420 FCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYE-SMESVFGVKPITAHYACMVDM 478

Query: 391 YAKTGSIDSSTEIFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFE 436
             + G  + + E+   +  + D   W +++       R    LDV E
Sbjct: 479 LGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGAC----RTHSQLDVAE 521



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 42/228 (18%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C S  S    K +H  L +  F+   Y+ +  + +Y + G       +FD  P K+ I W
Sbjct: 341 CASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMW 400

Query: 85  NICLRGLLKSDNLDTALKVFDEIP-----EPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  + G       + ALKVF E+P     +P+ V++ + +S  +  G  +  L+++  M+
Sbjct: 401 NSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESME 460

Query: 140 -LQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198
            + GV+P          T   AC                        ++DM G+ G    
Sbjct: 461 SVFGVKP---------ITAHYAC------------------------MVDMLGRAGRFNE 487

Query: 199 AFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245
           A  +  +M  E D   W SL+  C    + +L + +F + +     P+
Sbjct: 488 AMEMIDSMTVEPDAAVWGSLLGAC--RTHSQLDVAEFCAKKLIEIEPE 533


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/481 (32%), Positives = 257/481 (53%), Gaps = 5/481 (1%)

Query: 151 SILLSTVSSACH--GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE 208
           S++ S VS+ C   G+  H  +I++  +     + N L++MY KL     A  +      
Sbjct: 11  SLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPN 70

Query: 209 LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268
             +++W +LI+G   +G    AL  F +MR     P+++T      A   LR+   GKQV
Sbjct: 71  RSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328
            AL+VK G +S+  V  +  D++SK    E++ ++F+++   + A  N  +S     G  
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRY 190

Query: 329 EVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSL 387
           + AL  F    +E I PT+F +S VLS+   +  +E G   H++A+K+    N  V S+L
Sbjct: 191 DDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSAL 250

Query: 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL--EEGLPP 445
           ++MY K GSI+ +   F ++ +R+LV+WN ++ G    G+A   + +F+E+      + P
Sbjct: 251 VDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAP 310

Query: 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505
           + +T   VL AC+  G V+ GM +F +M+  YG+ PG EHYAC++DLL +AG + +A   
Sbjct: 311 NYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQF 370

Query: 506 TSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565
              MP +P  S+W ++L AS ++G  +L +  A+ + +L       + LL+  +A  GRW
Sbjct: 371 IKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRW 430

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDE 625
           E    V+K M+  GI K  GCSWI   N ++ F A +  H    +I  +L  L  EME  
Sbjct: 431 EEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAA 490

Query: 626 G 626
           G
Sbjct: 491 G 491



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 171/350 (48%), Gaps = 14/350 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K D  ++A  +    P   VV+W ++I+G    G    AL  FS M+   ++P+ FTF  
Sbjct: 54  KLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPC 113

Query: 153 LLS---TVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
                 ++ S   GKQ+H   +++G  +S+V +G S  DMY K G+   A  +F  M E 
Sbjct: 114 AFKASGSLRSPLVGKQVHALAVKAG-QISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER 172

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           +I +WN+ +S     G  + AL  F   R  G  P ++ +S V++AC  L  L+ GK V 
Sbjct: 173 NIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVH 232

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
            L+VK   + N  V SA +D++ KC  +ED+ R F+++   +    N MI  Y   G  +
Sbjct: 233 TLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQAD 292

Query: 330 VALELFQLML--REDIRPTEFTLSCVLSSIP-IPPVEHGSQ-FHSMAIKSGFDSNAVVAS 385
           +A+ LF  M      + P   T  CVLS+      V  G + F SM  + G +  A   +
Sbjct: 293 MAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYA 352

Query: 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTI-----MMGLTQNGRAA 429
            ++++  + G ++ + +   K+  R  VS W  +     M G ++ G+ A
Sbjct: 353 CVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVA 402



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 160/326 (49%), Gaps = 51/326 (15%)

Query: 27  SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNI 86
           S +S    K +H    K G  +  ++G    D+YS+ G +++  ++FDE+P++N  +WN 
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 87  CLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
            L                           NS++ G     Y D AL  F + + +G+ P+
Sbjct: 180 YLS--------------------------NSVLEGR----YDD-ALTAFIEARKEGIEPT 208

Query: 147 GFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
            F    ++S+V SAC        GK +H   +++ + + N+ +G++L+DMYGK G +  A
Sbjct: 209 DF----MVSSVLSACAGLSVLEVGKSVHTLAVKACV-VGNIFVGSALVDMYGKCGSIEDA 263

Query: 200 FGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY--SPDEYTISIVINACT 257
              F  M E ++++WN++I G  + G  ++A+  F  M    +  +P+  T   V++AC+
Sbjct: 264 ERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACS 323

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWDYAVI 315
           +  +++ G ++F ++  + G    +   +  +DL  +   +E + +  +++  R   +V 
Sbjct: 324 RAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVW 383

Query: 316 NVMIST---YGRYGFGEVALE-LFQL 337
             ++     +G+   G+VA + LF+L
Sbjct: 384 GALLGASKMFGKSELGKVAADNLFEL 409



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 13/203 (6%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S ++  C      +  K++H    K     + ++G+  +D+Y + G+ +D  + FDE+P+
Sbjct: 213 SSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPE 272

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP------EPDVVSWNSMISGYASCGYSDYAL 132
           +N ++WN  + G       D A+ +FDE+        P+ V++  ++S  +  G  +  +
Sbjct: 273 RNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGM 332

Query: 133 EMFSKMQLQ-GVRPSGFTFSILLSTVSSACHGKQ----IHGSMIRSGLSLSNVVLGNSLI 187
           E+F  M+ + G+ P    ++ ++  +  A   +Q    I    IR  +S+   +LG S  
Sbjct: 333 EIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGAS-- 390

Query: 188 DMYGKLGVLYYAFGVFLNMEELD 210
            M+GK  +   A      ++ LD
Sbjct: 391 KMFGKSELGKVAADNLFELDPLD 413


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 161/542 (29%), Positives = 289/542 (53%), Gaps = 7/542 (1%)

Query: 88  LRGLLKSDNL-DTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS 146
           L G+    NL + +++VFDE+PE DV SWN++IS +   G ++ ALE+F +M+     P+
Sbjct: 147 LVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPN 206

Query: 147 GFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVF 203
             + ++ +S  S       GK+IH   ++    L   V  ++L+DMYG+   L  A  VF
Sbjct: 207 SVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYV-NSALVDMYGRCDFLEMAREVF 265

Query: 204 LNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263
             M    +++WNS+I G    G  +  ++    M   G  P + T++ ++ AC++ RNL 
Sbjct: 266 QQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLL 325

Query: 264 KGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYG 323
            GK V    ++    ++  +  + IDL+ KC  ++ +  +F +  +      NVMIS Y 
Sbjct: 326 HGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYV 385

Query: 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAV 382
             G    A++++  M+   ++P   T + VLS+   +  +E G Q H    +S  +++ +
Sbjct: 386 SVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDEL 445

Query: 383 VASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG 442
           + S+L++MY+K G++  ++ IF  + K+D+VSW  ++     +G+  E L  F+E+ + G
Sbjct: 446 LLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFG 505

Query: 443 LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA 502
           + PD +T  AVL AC + G +D+G+  FS M+ +YG+    E Y+C+ID+L +AG+L +A
Sbjct: 506 VKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEA 565

Query: 503 IDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561
             I    P  +    +  ++  A  ++ D  L   +A+ +++        Y++L   YA 
Sbjct: 566 YGILQQKPETRDNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPDDASTYTVLFNLYAS 625

Query: 562 RGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWE 621
              W+A  RV+  M++ G+ K  GCSWI +  ++  F A +  H   + +Y  L LL+  
Sbjct: 626 GESWDAAKRVRLKMKEVGMRKKPGCSWIEMNEKVCHFFAEDRSHPQAENVYECLALLSGH 685

Query: 622 ME 623
           ME
Sbjct: 686 ME 687



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 251/515 (48%), Gaps = 40/515 (7%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C + KS   AK +H  +  +G  +   L    +++Y  F   D            +
Sbjct: 9   LLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVY--FACKD------------H 54

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIP-EPDVVSWNSMISGYASCGYSDYALEMFSKM- 138
           C                 +A  VF+ I    DV  WNS++SGY+        L++F ++ 
Sbjct: 55  C-----------------SARLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLL 97

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                 P  FT+  ++    +      G+ IH  +++SG  + +VV+ +SL+ MY K  +
Sbjct: 98  NCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKSG-HVCDVVVASSLVGMYAKFNL 156

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
              +  VF  M E D+ SWN++IS  +  G  E AL+ F  M  S + P+  +I++ I+A
Sbjct: 157 FEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISA 216

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
           C++L  L++GK++    +K  F  +  V SA +D++ +C+ LE +  +F+Q+ R      
Sbjct: 217 CSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAW 276

Query: 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIK 374
           N MI  Y   G  +  +EL   M+ E  RP++ TL+ +L +      + HG   H   I+
Sbjct: 277 NSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIR 336

Query: 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDV 434
           S  D++  +  SL+++Y K G +  +  +F+K  K  + SWN ++ G    G   + +DV
Sbjct: 337 SVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDV 396

Query: 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494
           +++++  G+ PD +T  +VL  C+    ++KG  +  ++ E   +   E   + ++D+  
Sbjct: 397 YDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESR-LETDELLLSALLDMYS 455

Query: 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           + G + +A  I +++P +   S W  ++ A   +G
Sbjct: 456 KCGNVKEASRIFNSIPKKDVVS-WTVMISAYGSHG 489



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 193/389 (49%), Gaps = 44/389 (11%)

Query: 14  SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLF 73
           ++S CS+L+  CL     +  K IH    K  F    Y+ +  +D+Y R    +   ++F
Sbjct: 213 AISACSRLL--CL-----ERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVF 265

Query: 74  DEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALE 133
            ++ +K+ ++WN                               SMI GY + G S   +E
Sbjct: 266 QQMRRKSLVAWN-------------------------------SMIRGYVARGDSKSCVE 294

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190
           + ++M ++G RPS  T + +L   S +    HGK +HG +IRS +  +++ +  SLID+Y
Sbjct: 295 LLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVD-ADIYINCSLIDLY 353

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250
            K G +  A  VFL  ++  + SWN +ISG  + G    A+D +  M   G  PD  T +
Sbjct: 354 FKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFT 413

Query: 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
            V++ C++L  L+KGKQ+     +    ++ ++LSA +D++SKC  ++++ R+F  + + 
Sbjct: 414 SVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKK 473

Query: 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFH 369
           D     VMIS YG +G    AL  F  M +  ++P   T   VLS+      ++ G ++ 
Sbjct: 474 DVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYF 533

Query: 370 S-MAIKSGFDSNAVVASSLMEMYAKTGSI 397
           S M  K G +++    S L+++  + G +
Sbjct: 534 SQMRSKYGIEASIEQYSCLIDILGRAGRL 562



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 36/300 (12%)

Query: 11  NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVL 70
            + S +  + ++  C   ++    K +HG++ +   +A  Y+    +DLY + G      
Sbjct: 304 TRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAE 363

Query: 71  QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDY 130
            +F +  +    SWN+ + G +   N   A+ V+D+           M+S          
Sbjct: 364 TVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQ-----------MVS---------- 402

Query: 131 ALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLI 187
                      GV+P   TF+ +LST S       GKQIH S+  S L    ++L ++L+
Sbjct: 403 ----------VGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLL-SALL 451

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
           DMY K G +  A  +F ++ + D++SW  +IS   + G    AL  F  M+  G  PD  
Sbjct: 452 DMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGV 511

Query: 248 TISIVINACTKLRNLDKGKQVFA-LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306
           T   V++AC     +D+G + F+ +  K G  ++    S  ID+  +  RL ++  + +Q
Sbjct: 512 TFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQ 571



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 47/200 (23%)

Query: 15  LSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFD 74
           LS CSQL        + +  K IH  + +        L +  LD+YS+ G   +  ++F+
Sbjct: 416 LSTCSQL-------AALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFN 468

Query: 75  EIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM 134
            IP+K+ +SW +                               MIS Y S G    AL  
Sbjct: 469 SIPKKDVVSWTV-------------------------------MISAYGSHGQPREALYH 497

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQI-----HGSMIRSGLSL-SNVVLGNSLID 188
           F +MQ  GV+P G TF   L+ +S+  H   I     + S +RS   + +++   + LID
Sbjct: 498 FDEMQKFGVKPDGVTF---LAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLID 554

Query: 189 MYGKLGVLYYAFGVFLNMEE 208
           + G+ G L  A+G+     E
Sbjct: 555 ILGRAGRLLEAYGILQQKPE 574


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 163/524 (31%), Positives = 285/524 (54%), Gaps = 9/524 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR--PSGFTFSILLSTV 157
           A  VF      DV++WNSM+  + +      AL+ +++M L+  R  P  FTF  LL   
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEM-LERSRNVPDRFTFPSLLKGC 89

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       GK +HG +++  L  S++ +  +L++MY   G L  A  +F  M   + + W
Sbjct: 90  ALLLEFKVGKVLHGQVVKYMLH-SDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S+ISG   +     AL  +  M   G+SPDE T++ +++AC +L++L  G ++ +   +
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +     +++ SA +++++KC  L+ + ++F+QL   D    + +I  Y +      AL+L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 335 F-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           F ++    ++RP E T+  V+S+   +  +E G   H    ++    +  + +SL++M++
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G ID++  IF  +  +DL+SWN+++ GL  +G   E L  F  +    L PD IT   
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIG 388

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G V +G  +F  ++  YGV    EHY C++DLLC+AG L +A +    MP Q
Sbjct: 389 VLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQ 448

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P  +IW S+L A  +Y +++L E  A  +++L+  +   Y LL+  YA R  W  + +V+
Sbjct: 449 PDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVR 508

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLR 616
           ++M + GI K  GCS + I N  ++F AG+  H    +I ++LR
Sbjct: 509 ELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLR 552



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 14/346 (4%)

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTI 249
           G LGV  YA+ VF +   LD+++WNS++    NS     AL  +  M   S   PD +T 
Sbjct: 24  GSLGV-GYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTF 82

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             ++  C  L     GK +    VK    S+  + +  +++++ C  L+ +  LFE++  
Sbjct: 83  PSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGH 142

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
            +  V   MIS Y +      AL L++ M  +   P E T++ ++S+   +  +  G + 
Sbjct: 143 RNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           HS   +      AV+ S+L+ MYAK G + ++ ++F +L  +D+ +W+ ++ G  +N R+
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRS 262

Query: 429 AETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
            E L +F E+     + P+ +T+ AV+ AC   G ++ G  V      +Y     + H  
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV-----HDYITRTQKGHSV 317

Query: 488 ----CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                +ID+  + G +  A  I  +M ++   S W S++   A++G
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGLALHG 362



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 154/340 (45%), Gaps = 36/340 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C     F   K +HG + K   ++  Y+    L++Y+  G                
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG---------------- 128

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +L +A  +F+ +   + V W SMISGY      + AL ++ KM+ 
Sbjct: 129 ---------------DLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P   T + L+S  +       G ++H  +    + +   VLG++L++MY K G L 
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKIC-AVLGSALVNMYAKCGDLK 232

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR-YSGYSPDEYTISIVINAC 256
            A  VF  + + D+ +W++LI G   +     AL  F  +   S   P+E TI  VI+AC
Sbjct: 233 TARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISAC 292

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +L +L+ G+ V     +     +  + ++ ID+FSKC  ++ + R+F+ +   D    N
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWN 352

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            M++    +G G  AL  F LM   D++P E T   VL++
Sbjct: 353 SMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTA 392



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 42/346 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C   K       +H H+ ++       LG+  +++Y++ G      Q+FD++  
Sbjct: 184 ATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSD 243

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP-----EPDVVSWNSMISGYASCGYSDYALE 133
           K+  +W+  + G +K++    AL++F E+       P+ V+  ++IS  A  G     LE
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLG----DLE 299

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
                                        G+ +H  + R+    S V L NSLIDM+ K 
Sbjct: 300 T----------------------------GRWVHDYITRTQKGHS-VSLNNSLIDMFSKC 330

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F +M   D+ISWNS+++G    G G  AL QF+ M+ +   PDE T   V+
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVL 390

Query: 254 NACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWD 311
            AC+    + +GK++F  +    G    S      +DL  +   L ++      +  + D
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            A+   M+     Y   E+  E  + +L  ++ PT   +  +LS+I
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEAARCLL--ELEPTNDGVYILLSNI 494


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 172/596 (28%), Positives = 293/596 (49%), Gaps = 48/596 (8%)

Query: 28  FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87
           F SF+  +  H    KL      Y  N  +   +R G      QLFDE+P ++ +SWN  
Sbjct: 27  FHSFN--RQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSI 84

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           + G  K+   D + ++F  +P  +VVSWNSMI+G       D A + F  M  +      
Sbjct: 85  ITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWN 144

Query: 148 FTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207
              S L+       + +    S +   +   NV+   +++D Y K+G +  A  +F  M 
Sbjct: 145 AMISGLVR------YDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMP 198

Query: 208 ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQ 267
           + +++SW  +ISG   +G  + A + F  M      PD+                     
Sbjct: 199 QKNVVSWTVMISGYVENGKFDEAENLFEQM------PDK--------------------- 231

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
                       N + ++A I  + K  + + +  LF+Q+   D A  N MI+ Y + G 
Sbjct: 232 ------------NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 279

Query: 328 GEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASS 386
           GE AL+L   ML+  ++P   TL  VL++   +  ++ G + H + +KSG++S   + ++
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNA 339

Query: 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446
           L+ MY K GSI  S   F ++D  D+VSWN ++    ++G     L  F E+    + PD
Sbjct: 340 LITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPD 399

Query: 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506
            IT  ++L AC + G V + +  F++M E Y ++P  EH+AC++D+L + GQ+ KA  I 
Sbjct: 400 GITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKII 459

Query: 507 STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566
             MPF+  C IW ++L A  ++ +VKL E  A+++++L+  +   Y +L+  YA  G W 
Sbjct: 460 QEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWG 519

Query: 567 AIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEM 622
            + RV+ +MR+ G+ K    SW+ I N+++ F   +  H    +I L L+ +  +M
Sbjct: 520 EVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRLELKGMKLQM 575


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 290/536 (54%), Gaps = 9/536 (1%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR--PSGFTFSILLSTV 157
           A  VF    E DV++WNSM+  + +      AL+ +++M L+  R  P  FTF  LL   
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEM-LERSRNVPDRFTFPSLLKGC 89

Query: 158 SSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       GK +HG +++  L  S++ +  +L++MY   G L  A  +F  M   + + W
Sbjct: 90  ALLLEFKVGKVLHGQVVKYMLH-SDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S+ISG   +     AL  +  M   G+SPDE T++ +++AC +L++L  G ++ +   +
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
           +     +++ SA +++++KC  L+ + ++F++L   D    + +I  Y +      AL+L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 335 F-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392
           F ++    ++RP E T+  V+S+   +  +E G   H    ++    +  + +SL++M++
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 393 KTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA 452
           K G ID++  IF  +  +DL+SWN+++ G   +G   E L  F  +    L PD IT   
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIG 388

Query: 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQ 512
           VL AC++ G V +G  +F  ++  YGV    EHY C++DLLC+AG L +A +    MP Q
Sbjct: 389 VLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQ 448

Query: 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572
           P  +IW S+L A  +Y +++L E  A  ++ L+  +   Y LL+  YA R  W  + +V+
Sbjct: 449 PDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVR 508

Query: 573 KVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
           ++M + GI K  GCS + I N  ++F AG+  H    +I ++LR +  +++  G V
Sbjct: 509 ELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYV 564



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 170/346 (49%), Gaps = 14/346 (4%)

Query: 191 GKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM-RYSGYSPDEYTI 249
           G LGV  YA+ VF +  ELD+++WNS++    NS     AL  +  M   S   PD +T 
Sbjct: 24  GSLGV-GYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTF 82

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
             ++  C  L     GK +    VK    S+  + +  +++++ C  L+ +  LFE++  
Sbjct: 83  PSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGH 142

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
            +  V   MIS Y +      AL L++ M  +   P E T++ ++S+   +  +  G + 
Sbjct: 143 RNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           HS   +      AV+ S+L+ MYAK G + ++ ++F KL  +D+ +W+ ++ G  +N R+
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRS 262

Query: 429 AETLDVFEELL-EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487
            E L +F E+     + P+ +T+ AV+ AC   G ++ G  V      +Y     + H  
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV-----HDYITRTQKGHSV 317

Query: 488 ----CIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
                +ID+  + G +  A  I  +M ++   S W S++   A++G
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFALHG 362



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 36/340 (10%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           L+  C     F   K +HG + K   ++  Y+    L++Y+  G                
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG---------------- 128

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                          +L +A  +F+ +   + V W SMISGY      + AL ++ KM+ 
Sbjct: 129 ---------------DLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEE 173

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
            G  P   T + L+S  +       G ++H  +    + +   VLG++L++MY K G L 
Sbjct: 174 DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKIC-AVLGSALVNMYAKCGDLK 232

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR-YSGYSPDEYTISIVINAC 256
            A  VF  + + D+ +W++LI G   +     AL  F  +   S   P+E TI  VI+AC
Sbjct: 233 TARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISAC 292

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
            +L +L+ G+ V     +     +  + ++ ID+FSKC  ++ + R+F+ +   D    N
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWN 352

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            M++ +  +G G  AL  F+LM   D++P E T   VL++
Sbjct: 353 SMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTA 392



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 42/346 (12%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+  C   K       +H H+ ++       LG+  +++Y++ G      Q+FD++  
Sbjct: 184 ATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSD 243

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP-----EPDVVSWNSMISGYASCGYSDYALE 133
           K+  +W+  + G +K++    AL++F E+       P+ V+  ++IS  A  G     LE
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLG----DLE 299

Query: 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
                                        G+ +H  + R+    S V L NSLIDM+ K 
Sbjct: 300 T----------------------------GRWVHDYITRTQKGHS-VSLNNSLIDMFSKC 330

Query: 194 GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
           G +  A  +F +M   D+ISWNS+++G    G G  AL QF  M+ +   PDE T   V+
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVL 390

Query: 254 NACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD-RWD 311
            AC+    + +GK++F  +    G    S      +DL  +   L ++      +  + D
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357
            A+   M+     Y   E+  E  + +L+  + PT   +  +LS+I
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEAARFLLK--LEPTNDGVYILLSNI 494


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 163/527 (30%), Positives = 283/527 (53%), Gaps = 12/527 (2%)

Query: 96  NLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF-SKMQLQGVRPSGFTFSILL 154
           +L+++ +VFD   E ++  WN+MI  Y        ++E+F   +  + +     TF +  
Sbjct: 270 DLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAA 329

Query: 155 STVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI 211
           S VS       G+Q HG + ++   L  V++ NSL+ MY + G +  +FGVF +M E D+
Sbjct: 330 SAVSGLQQVELGRQFHGFVSKNFRELPIVII-NSLMVMYSRCGFVQKSFGVFHSMRERDV 388

Query: 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271
           +SWN++IS    +G  +  L   Y M+  G+  D  T++ +++A + LRN + GKQ    
Sbjct: 389 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGF 448

Query: 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ--LDRWDYAVINVMISTYGRYGFGE 329
            ++ G     +  S  ID+++K   +  S +LFE       D A  N MIS Y + G  E
Sbjct: 449 LIRQGIQFEGMN-SYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTE 507

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
               +F+ ML ++IRP   T++ +L +   +  V+ G Q H  +I+   D N  VAS+L+
Sbjct: 508 ETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALV 567

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
           +MY+K G+I  +  +F +  +R+ V++ T+++G  Q+G     + +F  + E G+ PD I
Sbjct: 568 DMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAI 627

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508
              AVL AC+Y G VD+G+ +F  M+E Y + P  EHY CI D+L + G++ +A +    
Sbjct: 628 AFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKG 687

Query: 509 MPFQPGCS-IWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--YSLLTQAYAMRGRW 565
           +  +   + +W S+L +  ++G+++L E V+ER+  L           LL+  YA    W
Sbjct: 688 LGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYAEEQNW 747

Query: 566 EAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
           +++ RV+K MR+ G+ K  G S I +   +  F + + +H    +IY
Sbjct: 748 KSVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSRDQEHPHSGEIY 794



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 224/479 (46%), Gaps = 50/479 (10%)

Query: 6   KKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGT 65
           K A   K      S  +  C   K+    K +H HL +   N+   + N  +++Y     
Sbjct: 98  KTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY----- 152

Query: 66  SDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASC 125
              V  L     + +C  +             D   KVFD +   +VV+WN++IS Y   
Sbjct: 153 ---VSCLNAPGSELDCFEY-------------DVVRKVFDNMRRKNVVAWNTLISWYVKT 196

Query: 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQ---IHGSMIRSGLS-LSNVV 181
           G +  A   F+ M    ++PS  +F  +   V+++   K+    +G M++ G   + ++ 
Sbjct: 197 GRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLF 256

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI-----SGCFNSGYGELALDQFYS 236
           + +S I MY +LG L  +  VF +  E +I  WN++I     + C      EL L+   S
Sbjct: 257 VVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESI-ELFLEAIGS 315

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS------IVLSATIDL 290
                   DE T  +  +A + L+ ++ G+Q        GF+S +      +++++ + +
Sbjct: 316 KEIVS---DEVTFLLAASAVSGLQQVELGRQFH------GFVSKNFRELPIVIINSLMVM 366

Query: 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350
           +S+C  ++ S  +F  +   D    N MIS + + G  +  L L   M ++  +    T+
Sbjct: 367 YSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITV 426

Query: 351 SCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF--VKL 407
           + +LS+   +   E G Q H   I+ G      + S L++MYAK+G I  S ++F     
Sbjct: 427 TALLSAASNLRNKEIGKQTHGFLIRQGIQFEG-MNSYLIDMYAKSGLIRISQKLFEGSGY 485

Query: 408 DKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
            +RD  +WN+++ G TQNG   ET  VF ++LE+ + P+ +T+A++L AC+  G VD G
Sbjct: 486 AERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLG 544



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 190/390 (48%), Gaps = 20/390 (5%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG--VRP 145
           L  + +  N   A ++FD IP+P  V WN++I G+        AL  +S+M+      + 
Sbjct: 46  LSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKC 105

Query: 146 SGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMY--------GKLG 194
             +T+S  L   +   +   GK +H  +IR  L  S+ V+ NSL++MY         +L 
Sbjct: 106 DAYTYSSTLKACAETKNLKAGKAVHCHLIRC-LQNSSRVVHNSLMNMYVSCLNAPGSELD 164

Query: 195 VLYYAF--GVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252
              Y     VF NM   ++++WN+LIS    +G    A  QF  M      P   +   V
Sbjct: 165 CFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNV 224

Query: 253 INACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310
             A    R++ K    + L +K+G  ++ +  V+S+ I ++++   LE S R+F+     
Sbjct: 225 FPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVER 284

Query: 311 DYAVINVMISTYGRYGFGEVALELF-QLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQF 368
           +  V N MI  Y +      ++ELF + +  ++I   E T     S++  +  VE G QF
Sbjct: 285 NIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQF 344

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H    K+  +   V+ +SLM MY++ G +  S  +F  + +RD+VSWNT++    QNG  
Sbjct: 345 HGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLD 404

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACN 458
            E L +  E+ ++G   D IT+ A+L A +
Sbjct: 405 DEGLMLVYEMQKQGFKIDYITVTALLSAAS 434



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 54/233 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    S D  K +HG   +   + + ++ +  +D+YS+ G              
Sbjct: 529 ASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGA------------- 575

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                             +  A  +F +  E + V++ +MI GY   G  + A+ +F  M
Sbjct: 576 ------------------IKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSM 617

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSL-------SNVVLGNS----LI 187
           Q  G++P    F  +LS  S        +  ++  GL +        N+   +     + 
Sbjct: 618 QELGIKPDAIAFVAVLSACS--------YSGLVDEGLKIFEDMREVYNIQPSSEHYCCIT 669

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIIS--WNSLISGCFNSGYGELALDQFYSMR 238
           DM G++G +  A+     + E   I+  W SL+  C    +GEL L +  S R
Sbjct: 670 DMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSC--RLHGELELAETVSER 720



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAK----TGS------IDSSTEIFVKLDKRDLVS 414
           G   H   I+   +S+ VV +SLM MY       GS       D   ++F  + ++++V+
Sbjct: 126 GKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVA 185

Query: 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473
           WNT++    + GR AE    F  ++   + P  ++   V  A      + K  + +  M
Sbjct: 186 WNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLM 244


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 267/488 (54%), Gaps = 6/488 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +S  L  A  +FD++P    V+WN++I G+A       A+  F++M   GV P+  + S 
Sbjct: 61  RSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSS 120

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L     +  A  G  +H   +  G   S VV+G +L+DMY K   L  A  VF  MEE 
Sbjct: 121 VLVACVRLEDAAAGATLHSVGLMHGFCAS-VVVGTALVDMYAKCHHLGAAQQVFREMEEK 179

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ ++ +L++G   S     A+     M  SG +P+  T S ++++     ++D GKQV 
Sbjct: 180 NVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVH 239

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G   +  VLSA + ++SKC  LE+ V++   +   D    N +IS     G G+
Sbjct: 240 CAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGK 299

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A + F  M R       FT + VL +I     +  G Q H++ +K G+DS   V +SL+
Sbjct: 300 EAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLI 359

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYA+ G+I  S  +F+ ++  +LVSWN++M G  Q+G   E +++FE++    + PD I
Sbjct: 360 SMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHI 419

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE-YGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           T  +VL AC++ G VDKG+  F+ MK++ Y V    EHYAC++DLL +AG L +A  + +
Sbjct: 420 TFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLIN 479

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +PG S++ ++L A  I+G++++   V++R+++L       +  L+ A+A  GRW  
Sbjct: 480 GMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGN 539

Query: 568 IVRVKKVM 575
              +++ M
Sbjct: 540 AAEIREAM 547



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 184/375 (49%), Gaps = 5/375 (1%)

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           G   SN+    +L+  Y +   L  A  +F  M     ++WN+LI G   S    LA+  
Sbjct: 43  GFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAA 102

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M  +G SP   ++S V+ AC +L +   G  + ++ +  GF ++ +V +A +D+++K
Sbjct: 103 FARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAK 162

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C+ L  + ++F +++  + A    +++ +        A+ L + M R  + P   T S +
Sbjct: 163 CHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSL 222

Query: 354 LSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LSS   P  ++HG Q H   +K G + +  V S+L+ MY+K G +++  ++ + +  +D 
Sbjct: 223 LSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQ 282

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS- 471
           VS+N+++ GL+  GR  E    F E+   G   D  T A+VL A      + +G  V + 
Sbjct: 283 VSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTL 342

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            +K  Y  +   ++   +I +  + G +G++  +  +M   P    W S++   A +G  
Sbjct: 343 ILKIGYDSVVDVQN--SLISMYARHGAIGESNGVFISME-APNLVSWNSLMSGCAQHGHG 399

Query: 532 KLTENVAERMMDLQL 546
           K    + E+M  L +
Sbjct: 400 KEVVEMFEQMRRLHV 414



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 170/355 (47%), Gaps = 36/355 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + +A V+  + S  S L+  C+  +      T+H      GF A   +G   +D+Y++  
Sbjct: 106 MARAGVSPTASSVSSVLV-ACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCH 164

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                 Q+F E+ +KN                               V ++ ++++G+  
Sbjct: 165 HLGAAQQVFREMEEKN-------------------------------VATFTALVAGFVL 193

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVV 181
                 A+ +  +M+  GV P+  T+S LLS+ +S     HGKQ+H ++++ GL     V
Sbjct: 194 SRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFV 253

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L ++L+ MY K G+L     V +++   D +S+NS+ISG    G G+ A   F  MR  G
Sbjct: 254 L-SALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHG 312

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D +T + V+ A     +L +G+QV  L +K+G+ S   V ++ I ++++   + +S 
Sbjct: 313 TDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESN 372

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +F  ++  +    N ++S   ++G G+  +E+F+ M R  ++P   T   VL++
Sbjct: 373 GVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTA 427



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  + K+G+++   + N  + +Y+R G   +   +F  +   N +SWN  + G  + 
Sbjct: 337 RQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQH 396

Query: 95  DNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
            +    +++F+++     +PD +++ S+++  +  G  D  LE F+ M+ +G
Sbjct: 397 GHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 448



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSS 400
           D R     +  + +  P P      Q H+ A K GF  SN    ++L+  Y ++  +  +
Sbjct: 9   DARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNLFATTALLAFYCRSRRLPEA 68

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
             +F ++  R  V+WNT++ G  ++      +  F  +   G+ P   ++++VL+AC
Sbjct: 69  QHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVAC 125


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 168/614 (27%), Positives = 300/614 (48%), Gaps = 38/614 (6%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C         K IHG + K G +   ++GN  + +Y                    
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECA---------------- 143

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           C+ +               A  VFD++ E DVVSW++MI   +     D ALE+  +M  
Sbjct: 144 CVEY---------------ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNF 188

Query: 141 QGVRPSGFTFSILLSTVSSACH---GKQIHGSMIR-SGLSLSNVVLGNSLIDMYGKLGVL 196
             VRPS      +++  +   +   GK +H  +IR S      V    +L+DMY K G L
Sbjct: 189 MQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHL 248

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
             A  +F  + +  ++SW ++I+GC  S   E     F  M+     P+E T+  +I  C
Sbjct: 249 GLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVEC 308

Query: 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVIN 316
                L  GKQ+ A  ++ GF  +  + +A +D++ KC+ + ++  LF+     D  +  
Sbjct: 309 GFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWT 368

Query: 317 VMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHSMAIKS 375
            M+S Y +    + A  LF  M    +RPT+ T+  +LS   +   ++ G   HS   K 
Sbjct: 369 AMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE 428

Query: 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVF 435
             + + ++ ++L++MYAK G I+++  +F++   RD+  WN I+ G   +G   E LD+F
Sbjct: 429 RVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIF 488

Query: 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495
            E+  +G+ P+ IT   +L AC++ G V +G  +F  M   +G++P  EHY C++DLL +
Sbjct: 489 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 548

Query: 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS-L 554
           AG L +A ++  +MP +P   +W +++ A  ++ + +L E  A ++++++ P    Y+ L
Sbjct: 549 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIE-PENCGYNVL 607

Query: 555 LTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLV 614
           ++  YA   RW     V+K M+  G+ K  G S I +   ++ F  G+  H   ++I  +
Sbjct: 608 MSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEM 667

Query: 615 LRLLTWEMEDEGCV 628
           L  +  ++ + G V
Sbjct: 668 LAEMRRKLNEAGYV 681


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 143/466 (30%), Positives = 256/466 (54%), Gaps = 2/466 (0%)

Query: 164 KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
           +Q+H      G+ L N+V+ N LI  Y     L  A+G+F  M   D +SW+ ++ G   
Sbjct: 79  RQVHAQASVHGM-LENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 137

Query: 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
            G        F  +   G  PD YT+  VI AC  L+NL  G+ +  +  K G   +  V
Sbjct: 138 VGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 197

Query: 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
            +A +D++ KC  +ED+  LF+++   D     VMI  Y   G    +L LF+ M  E +
Sbjct: 198 CAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 257

Query: 344 RPTEFTLSCVLSSIPIPPVEHGSQFHSMAI-KSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
            P +  +  V+ +       H ++     I +  F  + ++ +++++MYAK G ++S+ E
Sbjct: 258 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 317

Query: 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
           IF ++++++++SW+ ++     +G+  + LD+F  +L  G+ PD+ITLA++L AC++ G 
Sbjct: 318 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGL 377

Query: 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
           V++G+  FS+M E+Y V    +HY C++DLL +AG+L +A+ +  +M  +    +W + L
Sbjct: 378 VEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFL 437

Query: 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
            A   + DV L E  A  +++LQ  +P  Y LL+  YA  GRWE + +++ +M +  + K
Sbjct: 438 GACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKK 497

Query: 583 VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
             G +WI + N+ + F+ G+  H   ++IY +L+ L+ ++E  G V
Sbjct: 498 TPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYV 543



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 251/466 (53%), Gaps = 2/466 (0%)

Query: 164  KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFN 223
            +Q+H      G+ L N+++ N L+  Y     L  A+G+F  M   D +SW+ ++ G   
Sbjct: 755  RQVHXQASVHGM-LQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 813

Query: 224  SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIV 283
             G        F  +   G  PD YT+  VI AC  L+NL  G+ +  +  K G   +  V
Sbjct: 814  VGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFV 873

Query: 284  LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDI 343
             +A +D++ KC  +ED+  LF+++   D     VMI  Y   G    +L LF  M  E +
Sbjct: 874  CAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGV 933

Query: 344  RPTEFTL-SCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402
             P +  + + V +   +  +           +  F  + ++ +++++M+AK G ++S+ E
Sbjct: 934  VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESARE 993

Query: 403  IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462
            IF ++++++++SW+ ++     +G+  + LD+F  +L  G+ P++ITL ++L AC++ G 
Sbjct: 994  IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGL 1053

Query: 463  VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESIL 522
            V++G+  FS M E+Y V    +HY C++DLL +AG+L +A+ +  +M  +    +W + L
Sbjct: 1054 VEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113

Query: 523  RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582
             A   + DV L E  A  +++LQ  +P  Y LL+  YA  GRWE + +++ +M +  + K
Sbjct: 1114 GACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKK 1173

Query: 583  VTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628
            + G +WI + N+ + F+ G+  H   ++IY +L+ L  ++E  G V
Sbjct: 1174 IPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV 1219



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 5/278 (1%)

Query: 97   LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
            LD A  +FD +   D VSW+ M+ G+A  G        F ++   G RP  +T   ++  
Sbjct: 786  LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRA 845

Query: 157  ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
               + +   G+ IH  + + GL L + V   +L+DMYGK   +  A  +F  M E D+++
Sbjct: 846  CRDLKNLQMGRLIHHIVYKFGLDLDHFVCA-ALVDMYGKCREIEDARFLFDKMXERDLVT 904

Query: 214  WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
            W  +I G    G    +L  F  MR  G  PD+  +  V+ AC KL  + K + +     
Sbjct: 905  WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 964

Query: 274  KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
            +  F  + I+ +A ID+ +KC  +E +  +F++++  +    + MI+ YG +G G  AL+
Sbjct: 965  RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 1024

Query: 334  LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQFHS 370
            LF +MLR  I P + TL  +L +      VE G +F S
Sbjct: 1025 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 1062



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 155/312 (49%), Gaps = 6/312 (1%)

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156
           LD A  +FD +   D VSW+ M+ G+A  G        F ++   G RP  +T   ++  
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169

Query: 157 ---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213
              + +   G+ IH  + + GL L + V   +L+DMY K   +  A  +F  M+E D+++
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCA-ALVDMYVKCREIEDARFLFDKMQERDLVT 228

Query: 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSV 273
           W  +I G    G    +L  F  MR  G  PD+  +  V+ AC KL  + K + +     
Sbjct: 229 WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ 288

Query: 274 KVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333
           +  F  + I+ +A ID+++KC  +E +  +F++++  +    + MI+ YG +G G  AL+
Sbjct: 289 RKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 348

Query: 334 LFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQ-FHSMAIKSGFDSNAVVASSLMEMY 391
           LF +ML   + P + TL+ +L +      VE G + F SM       ++    + ++++ 
Sbjct: 349 LFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLL 408

Query: 392 AKTGSIDSSTEI 403
            + G +D + ++
Sbjct: 409 GRAGRLDEALKL 420



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 50/298 (16%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           +I  C   K+    + IH  ++K G +   ++    +D+Y                    
Sbjct: 166 VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMY-------------------- 205

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
                      +K   ++ A  +FD++ E D+V+W  MI GYA CG ++ +L +F KM+ 
Sbjct: 206 -----------VKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 141 QGVRPSGFTFSILLSTVSSAC------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           +GV P      + + TV  AC      H  +I    I+      +V+LG ++IDMY K G
Sbjct: 255 EGVVPD----KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 310

Query: 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVIN 254
            +  A  +F  MEE ++ISW+++I+     G G  ALD F  M  SG  PD+ T++ ++ 
Sbjct: 311 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLY 370

Query: 255 ACTKLRNLDKGKQVFA-----LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           AC+    +++G + F+      SV+      + V    +DL  +  RL+++++L + +
Sbjct: 371 ACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCV----VDLLGRAGRLDEALKLIKSM 424



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 141/281 (50%), Gaps = 9/281 (3%)

Query: 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312
           I+A    RNL + +QV A +   G L N +V +  I  +S    L+D+  LF+ +   D 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSM 371
              +VM+  + + G        F+ ++R   RP  +TL  V+ +   +  ++ G   H +
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAET 431
             K G D +  V ++L++MY K   I+ +  +F K+ +RDLV+W  ++ G  + G+A E+
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 245

Query: 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV---FSAMKEEYGVMPGEEHYAC 488
           L +FE++ EEG+ PD++ +  V+ AC   G + K  ++       K +  V+ G      
Sbjct: 246 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TA 301

Query: 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
           +ID+  + G +  A +I   M  +   S W +++ A   +G
Sbjct: 302 MIDMYAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHG 341



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 52/299 (17%)

Query: 21   LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
            +I  C   K+    + IH  ++K G +   ++    +D+Y +    +D   LFD++ +++
Sbjct: 842  VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERD 901

Query: 81   CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             ++W + + G  +  N + +L +FD                               KM+ 
Sbjct: 902  LVTWTVMIGGYAECGNANESLVLFD-------------------------------KMRE 930

Query: 141  QGVRPSGFTFSILLSTVSSAC-------HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193
            +GV P      + + TV  AC         + I   + R    L +V+LG ++IDM+ K 
Sbjct: 931  EGVVPD----KVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL-DVILGTAMIDMHAKC 985

Query: 194  GVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253
            G +  A  +F  MEE ++ISW+++I+     G G  ALD F  M  SG  P++ T+  ++
Sbjct: 986  GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLL 1045

Query: 254  NACTKLRNLDKGKQVFAL-----SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
             AC+    +++G + F+      SV+      + V    +DL  +  RL+++++L   +
Sbjct: 1046 YACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCV----VDLLGRAGRLDEALKLIXSM 1100


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 251/452 (55%), Gaps = 3/452 (0%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H  +++ GL    +V  N LI++Y K  +  ++  VF    +    +W+S+IS  
Sbjct: 43  QGLQLHAHILKFGLQTIPLVSHN-LINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAF 101

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +    LAL  F  M   G  PD++       AC  LR  D GK V  L+VK G+  + 
Sbjct: 102 AQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDV 161

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V S+ +D+++KC  + D+  LF+++   +    + MI  Y +   G  AL LF+  L E
Sbjct: 162 FVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIE 221

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           D+   +FT S V+        +E G   H + +K  FDS++ V S+L+ +Y+K G I+ +
Sbjct: 222 DVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGA 281

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F ++  R+L  WN++++   Q+        +FEE+   G+ P+ I+  +VL AC++ 
Sbjct: 282 YQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHA 341

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G V+KG   FS M++ YG+ P  EHYA ++DLL +AG+L +A+ +   MP +P  S+W +
Sbjct: 342 GLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGA 400

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L    I+ D ++   VA+R++++   S   + LL+ AYA  GR+E   R++K++R  G+
Sbjct: 401 LLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGV 460

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            K TG SW+   N+++TF AG+  H    +IY
Sbjct: 461 KKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 186/414 (44%), Gaps = 48/414 (11%)

Query: 20  QLIDRCLSF---KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           Q+ +  LSF   +S      +H H+ K G      + +  ++LYS+       L LF   
Sbjct: 27  QICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSK-----TQLPLF--- 78

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                                  +L+VFDE P+    +W+S+IS +A       AL+ F 
Sbjct: 79  -----------------------SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFR 115

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           +M   GVRP    +     + + AC        GK +H   +++G    +V +G+SL+DM
Sbjct: 116 RMLNDGVRPDDHIY----PSATKACGFLRRSDVGKSVHCLAVKTGY-YCDVFVGSSLVDM 170

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  +F  M E +++SW+ +I G      G  AL  F          +++T 
Sbjct: 171 YAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTF 230

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S VI  C+    L+ GK +  L +K+ F S+S V SA I L+SKC  +E + ++F+++  
Sbjct: 231 SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT 290

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQF 368
            +  + N M+    ++   +    LF+ M    ++P   + LS + +      VE G ++
Sbjct: 291 RNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREY 350

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMG 421
            S+    G +      +SL+++  + G +  +  +  ++  R   S W  ++ G
Sbjct: 351 FSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 38/208 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C S    +  K IHG   K+ F++ +++G+  + LYS+ G  +   Q+FDEIP 
Sbjct: 231 SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT 290

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEM 134
           +N   WN  L    +  +      +F+E+     +P+ +S+ S++   +  G  +   E 
Sbjct: 291 RNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREY 350

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           FS M+  G+ P    ++                                 SL+D+ G+ G
Sbjct: 351 FSLMRDYGIEPETEHYA---------------------------------SLVDLLGRAG 377

Query: 195 VLYYAFGVFLNMEELDIIS-WNSLISGC 221
            L  A  V   M      S W +L++GC
Sbjct: 378 KLQEAVSVIKQMPMRPTESVWGALLTGC 405


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 169/595 (28%), Positives = 296/595 (49%), Gaps = 38/595 (6%)

Query: 37  IHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDN 96
           +H H    GF+++ ++ +  +DLY +F                                 
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFS-------------------------------R 153

Query: 97  LDTALKVFDEIPEPDVVSWNSMISGYA-SCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155
           +  A KVFD++P+ D V WN+MI+G   +C Y D ++++F  M  QGVR    T + +L 
Sbjct: 154 VAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDD-SVQVFKDMVAQGVRLDSTTVATVLP 212

Query: 156 TVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDII 212
            V+       G  I    ++ G    + VL   LI ++ K   +  A  +F  + + D++
Sbjct: 213 AVAEMQEVKVGMGIQCLALKLGFHFDDYVL-TGLISVFSKCEDVDTARLLFGMIRKPDLV 271

Query: 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS 272
           S+N+LISG   +G  E A+  F  +  SG      T+  +I   +   +L     +    
Sbjct: 272 SYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFC 331

Query: 273 VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332
           VK G +    V +A   ++S+ N ++ + +LF++      A  N MIS Y + G  E+A+
Sbjct: 332 VKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAI 391

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391
            LFQ M+  +  P   T++ +LS+   +  +  G   H +      + N  V+++L++MY
Sbjct: 392 SLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMY 451

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
           AK G+I  ++++F    +++ V+WNT++ G   +G   E L +F E+L  G  P  +T  
Sbjct: 452 AKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFL 511

Query: 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPF 511
           +VL AC++ G V +G  +F AM  +Y + P  EHYAC++D+L +AGQL KA++    MP 
Sbjct: 512 SVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPV 571

Query: 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571
           +PG ++W ++L A  I+ D  L    +ER+ +L   +   Y LL+  Y++   +     V
Sbjct: 572 EPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASV 631

Query: 572 KKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626
           ++ ++K  ++K  GC+ I +    + F  G+  H     IY  L  LT +M + G
Sbjct: 632 REAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMG 686



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 209/435 (48%), Gaps = 12/435 (2%)

Query: 100 ALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM-QLQGVRPSGFTFSILLSTVS 158
           A  +F  +P+PD+  +N +I G+ S      ++  ++ + +   + P  FT++  +S   
Sbjct: 59  ARALFFSVPKPDIFLFNVLIKGF-SFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASP 117

Query: 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI 218
               G  +H   +  G   SN+ + ++L+D+Y K   + YA  VF  M + D + WN++I
Sbjct: 118 DDNLGMCLHAHAVVDGFD-SNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMI 176

Query: 219 SGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278
           +G   +   + ++  F  M   G   D  T++ V+ A  +++ +  G  +  L++K+GF 
Sbjct: 177 TGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH 236

Query: 279 SNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338
            +  VL+  I +FSKC  ++ +  LF  + + D    N +IS +   G  E A++ F+ +
Sbjct: 237 FDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFREL 296

Query: 339 LREDIRPTEFTLSCVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSI 397
           L    R +  T+  ++  S P   +          +KSG      V+++L  +Y++   I
Sbjct: 297 LVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEI 356

Query: 398 DSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           D + ++F +  ++ + +WN ++ G  Q+G     + +F+E++     P+ +T+ ++L AC
Sbjct: 357 DLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC 416

Query: 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKA---IDITSTMPFQPG 514
              G +  G  V   +K +  +         +ID+  + G + +A    D+TS    +  
Sbjct: 417 AQLGALSFGKSVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFDLTS----EKN 471

Query: 515 CSIWESILRASAIYG 529
              W +++    ++G
Sbjct: 472 TVTWNTMIFGYGLHG 486



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 36/291 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           LI     F     A  I G   K G      +      +YSR    D   QLFDE  +K 
Sbjct: 311 LIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKT 370

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
             +WN                               +MISGYA  G ++ A+ +F +M  
Sbjct: 371 VAAWN-------------------------------AMISGYAQSGLTEMAISLFQEMMT 399

Query: 141 QGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
               P+  T + +LS  +   +   GK +H  +I+S     N+ +  +LIDMY K G + 
Sbjct: 400 TEFTPNPVTITSILSACAQLGALSFGKSVH-QLIKSKNLEQNIYVSTALIDMYAKCGNIS 458

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  +F    E + ++WN++I G    GYG+ AL  F  M + G+ P   T   V+ AC+
Sbjct: 459 EASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACS 518

Query: 258 KLRNLDKGKQVF-ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
               + +G ++F A+  K      +   +  +D+  +  +LE ++    ++
Sbjct: 519 HAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKM 569



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 51/215 (23%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + ++  C    +  F K++H  +       + Y+    +D+Y++ G   +  QLFD   +
Sbjct: 410 TSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSE 469

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
           KN ++WN                               +MI GY   GY D AL++F++M
Sbjct: 470 KNTVTWN-------------------------------TMIFGYGLHGYGDEALKLFNEM 498

Query: 139 QLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN-----------SLI 187
              G +PS  TF  +L   S        H  ++R G  + + ++              ++
Sbjct: 499 LHLGFQPSSVTFLSVLYACS--------HAGLVREGDEIFHAMVNKYRIEPLAEHYACMV 550

Query: 188 DMYGKLGVLYYAFGVFLNME-ELDIISWNSLISGC 221
           D+ G+ G L  A      M  E     W +L+  C
Sbjct: 551 DILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGAC 585


>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera]
 gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 162/578 (28%), Positives = 295/578 (51%), Gaps = 20/578 (3%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L+ R    +     + +H  L K   +   +L N  L++Y++ G      +LFD  P 
Sbjct: 39  ATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFPH 98

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSK 137
           +N +SW++ + G ++ +    AL +F ++    V ++  +++S   +C   D   +    
Sbjct: 99  RNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDSD---- 154

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
                    G+ +S  LS +       Q++  ++R G    NV L N  +    +   L 
Sbjct: 155 ------NNEGYYYSYYLSRLY------QVYAFVVRLGFEW-NVFLMNVFMTALIRSRKLA 201

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A  VF      D++SWN++++G      GE+    +  M   G  PD +  S V++   
Sbjct: 202 EALEVFEACRGKDVVSWNAVMAGLVQFCCGEVP-GFWRRMCCEGVKPDNFAFSGVLSGLA 260

Query: 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINV 317
            L +   G QV    VK G      + ++ +D++ KC  LE+ ++ FE++   D    N 
Sbjct: 261 ALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQ 320

Query: 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSG 376
           M +     G    ALEL + M R  +R  +FTL+  L++   +  +E G + H + IK G
Sbjct: 321 MAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLRIKLG 380

Query: 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFE 436
            D +  V ++L++MYAK GS+  + ++F  ++ R +VSW T++MG  QNG+A + L++FE
Sbjct: 381 NDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFE 440

Query: 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496
           ++  EG  P+ IT   VL AC+ GG +++G   F +M  ++G+ PGE+HYAC++D+L +A
Sbjct: 441 QMRAEGKAPNYITFICVLYACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRA 500

Query: 497 GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556
           G + +A ++   MPFQ    +W+++L A  ++GDV+     A++ + L       Y +L+
Sbjct: 501 GHIKEARELIRRMPFQASVLVWQTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLS 560

Query: 557 QAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNR 594
             +A    W+ +  ++++M    + K+ G SWI +  R
Sbjct: 561 NMFADGRNWKGVGSLRELMETRDVKKMPGSSWIQLNKR 598



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 17/235 (7%)

Query: 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATI-DLFSK 293
           + + ++  + DE   + ++    + R+   G+ + A  +K G L NS+ L+  I ++++K
Sbjct: 24  FRLIFTNSTHDEDLYATLLRRFAETRDSQHGRALHAKLIK-GPLHNSLFLNNHILNMYAK 82

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C  L  + +LF+     +    +V+I+ + ++     AL LF  M    +   EFTL   
Sbjct: 83  CGHLPHAHKLFDHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSA 142

Query: 354 LSSIPIPPVEHGS--------------QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           L +  +   +  +              Q ++  ++ GF+ N  + +  M    ++  +  
Sbjct: 143 LHACSLYDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAE 202

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454
           + E+F     +D+VSWN +M GL Q     E    +  +  EG+ PD    + VL
Sbjct: 203 ALEVFEACRGKDVVSWNAVMAGLVQFC-CGEVPGFWRRMCCEGVKPDNFAFSGVL 256


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 267/488 (54%), Gaps = 6/488 (1%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           +S  L  A  +FD++P    V+WN++I G+A       A+  F++M   GV P+  + S 
Sbjct: 106 RSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSS 165

Query: 153 LLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
           +L     +  A  G  +H   +  G   S VV+G +L+DMY K   L  A  VF  MEE 
Sbjct: 166 VLVACVRLEDAAAGATLHSVGLMHGFCAS-VVVGTALVDMYAKCHHLGAAQQVFREMEEK 224

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269
           ++ ++ +L++G   S     A+     M  SG +P+  T S ++++     ++D GKQV 
Sbjct: 225 NVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVH 284

Query: 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGE 329
              +K G   +  VLSA + ++SKC  LE+ V++   +   D    N +IS     G G+
Sbjct: 285 CAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGK 344

Query: 330 VALELFQLMLREDIRPTEFTLSCVLSSI-PIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388
            A + F  M R       FT + VL +I     +  G Q H++ +K G+DS   V +SL+
Sbjct: 345 EAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLI 404

Query: 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448
            MYA+ G+I  S  +F+ ++  +LVSWN++M G  Q+G   E +++FE++    + PD I
Sbjct: 405 SMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHI 464

Query: 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE-YGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507
           T  +VL AC++ G VDKG+  F+ MK++ Y V    EHYAC++DLL +AG L +A  + +
Sbjct: 465 TFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLIN 524

Query: 508 TMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567
            MP +PG S++ ++L A  I+G++++   V++R+++L       +  L+ A+A  GRW  
Sbjct: 525 GMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGN 584

Query: 568 IVRVKKVM 575
              +++ M
Sbjct: 585 AAEIREAM 592



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 184/375 (49%), Gaps = 5/375 (1%)

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
           G   SN+    +L+  Y +   L  A  +F  M     ++WN+LI G   S    LA+  
Sbjct: 88  GFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAA 147

Query: 234 FYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK 293
           F  M  +G SP   ++S V+ AC +L +   G  + ++ +  GF ++ +V +A +D+++K
Sbjct: 148 FARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAK 207

Query: 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCV 353
           C+ L  + ++F +++  + A    +++ +        A+ L + M R  + P   T S +
Sbjct: 208 CHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSL 267

Query: 354 LSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412
           LSS   P  ++HG Q H   +K G + +  V S+L+ MY+K G +++  ++ + +  +D 
Sbjct: 268 LSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQ 327

Query: 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS- 471
           VS+N+++ GL+  GR  E    F E+   G   D  T A+VL A      + +G  V + 
Sbjct: 328 VSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTL 387

Query: 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDV 531
            +K  Y  +   ++   +I +  + G +G++  +  +M   P    W S++   A +G  
Sbjct: 388 ILKIGYDSVVDVQN--SLISMYARHGAIGESNGVFISME-APNLVSWNSLMSGCAQHGHG 444

Query: 532 KLTENVAERMMDLQL 546
           K    + E+M  L +
Sbjct: 445 KEVVEMFEQMRRLHV 459



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 170/355 (47%), Gaps = 36/355 (10%)

Query: 5   LKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFG 64
           + +A V+  + S  S L+  C+  +      T+H      GF A   +G   +D+Y++  
Sbjct: 151 MARAGVSPTASSVSSVLV-ACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCH 209

Query: 65  TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124
                 Q+F E+ +KN                               V ++ ++++G+  
Sbjct: 210 HLGAAQQVFREMEEKN-------------------------------VATFTALVAGFVL 238

Query: 125 CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSA---CHGKQIHGSMIRSGLSLSNVV 181
                 A+ +  +M+  GV P+  T+S LLS+ +S     HGKQ+H ++++ GL     V
Sbjct: 239 SRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFV 298

Query: 182 LGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSG 241
           L ++L+ MY K G+L     V +++   D +S+NS+ISG    G G+ A   F  MR  G
Sbjct: 299 L-SALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHG 357

Query: 242 YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              D +T + V+ A     +L +G+QV  L +K+G+ S   V ++ I ++++   + +S 
Sbjct: 358 TDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESN 417

Query: 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
            +F  ++  +    N ++S   ++G G+  +E+F+ M R  ++P   T   VL++
Sbjct: 418 GVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTA 472



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)

Query: 333 ELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMY 391
           E+   +   D R     +  + +  P P      Q H+ A K GF  SN    ++L+  Y
Sbjct: 45  EMRDFLRHADARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNLFATTALLAFY 104

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451
            ++  +  +  +F ++  R  V+WNT++ G  ++      +  F  +   G+ P   +++
Sbjct: 105 CRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVS 164

Query: 452 AVLLAC 457
           +VL+AC
Sbjct: 165 SVLVAC 170



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H  + K+G+++   + N  + +Y+R G   +   +F  +   N +SWN  + G  + 
Sbjct: 382 RQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQH 441

Query: 95  DNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG 142
            +    +++F+++     +PD +++ S+++  +  G  D  LE F+ M+ +G
Sbjct: 442 GHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKG 493


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 160/562 (28%), Positives = 280/562 (49%), Gaps = 37/562 (6%)

Query: 35  KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94
           + +H    + GF A  ++G+  ++LYSR G+                             
Sbjct: 156 EQVHSLAVRAGFAADAWIGSCLIELYSRCGS----------------------------- 186

Query: 95  DNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154
             L  A +VF  +  PDVV + S++S     G    A+++  +M  QG++P+  T + +L
Sbjct: 187 --LRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSML 244

Query: 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW 214
           +       G+QIHG M++  +   +V    +LID Y + G    A  VF N+E  +++SW
Sbjct: 245 AECPRGI-GEQIHGYMLKV-MGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSW 302

Query: 215 NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274
            S++  C   G  + AL  F  M   G  P+E+  SI ++AC    ++  G+Q+   ++K
Sbjct: 303 CSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACG---SVCLGRQIHCSAIK 359

Query: 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334
              +++  V +A + ++ +   + +   +  +++  D       IS   + GF E A+ L
Sbjct: 360 RDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVAL 419

Query: 335 FQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393
              M  E   P ++  S  LSS   +  +  G Q H +A+K G D      ++L+ MY+K
Sbjct: 420 LLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSK 479

Query: 394 TGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453
            G I S+   F  +D  D++SWN+++ GL Q+G A   L+ F E+      PD  T  +V
Sbjct: 480 CGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSV 539

Query: 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP 513
           L+ CN+ G V +G   F  M + YG+ P   HYAC+ID+L + G+  +A+ +   MPF+P
Sbjct: 540 LVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEP 599

Query: 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573
              IW+++L +  ++ ++ + +  A+++M+L       Y L++  YAM   W    RV++
Sbjct: 600 DVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVRR 659

Query: 574 VMRKNGINKVTGCSWIGIKNRI 595
            M + G+ K  G SWI +KN +
Sbjct: 660 RMDEIGVKKDAGWSWIEVKNEV 681



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 216/456 (47%), Gaps = 24/456 (5%)

Query: 88  LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147
           L GL+KS  L  AL +FD +P  +VV+W + ISG    G  + A  MF+ M   GV P+ 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 148 F---TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
           F         +   +   G+Q+H   +R+G + ++  +G+ LI++Y + G L  A  VF 
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFA-ADAWIGSCLIELYSRCGSLRAAEEVFR 195

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            ME  D++ + SL+S    +G    A+D    M   G  P+E+T++ ++  C +      
Sbjct: 196 RMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GI 251

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G+Q+    +KV    +    +A ID +S+      +  +FE L+  +      M+    R
Sbjct: 252 GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIR 311

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384
            G  + AL +F  M+ E ++P EF  S  LS+     V  G Q H  AIK    ++  V+
Sbjct: 312 DGRLDDALRVFSEMISEGVQPNEFAFSIALSA--CGSVCLGRQIHCSAIKRDLMTDIRVS 369

Query: 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444
           ++L+ MY ++G +     +  K++  DLVSW   +    QNG + + + +  ++  EG  
Sbjct: 370 NALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFT 429

Query: 445 PDRITLAAVLLACNYGGFVDKGMLVFS-AMKE--EYGVMPGEEHYACIIDLLCQAGQLGK 501
           P+    ++ L +C     + +G  +   A+K   ++ V  G      +I++  + G++G 
Sbjct: 430 PNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGN----ALINMYSKCGRIGS 485

Query: 502 ---AIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534
              A D+  T         W S++   A +GD  L 
Sbjct: 486 ARLAFDVMDTHDVMS----WNSLIHGLAQHGDANLA 517



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 146/279 (52%), Gaps = 3/279 (1%)

Query: 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238
           +VVL    +D   K G L  A  +F  M   ++++W + ISGC  +G  E A   F  M 
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298
            SG +P+++  +  + AC     L  G+QV +L+V+ GF +++ + S  I+L+S+C  L 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 299 DSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358
            +  +F +++  D      ++S   R G    A+++   M R+ ++P E T++ +L+   
Sbjct: 189 AAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAEC- 247

Query: 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI 418
             P   G Q H   +K     +   +++L++ Y++ G   ++  +F  L+ +++VSW ++
Sbjct: 248 --PRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSM 305

Query: 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457
           M    ++GR  + L VF E++ EG+ P+    +  L AC
Sbjct: 306 MQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC 344



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 42/222 (18%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C         + +H    KLG +     GN  +++YS+ G        FD +   + +SW
Sbjct: 442 CADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSW 501

Query: 85  NICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
           N  + GL +  + + AL+ F E+      PD  ++ S++ G    G        F +M  
Sbjct: 502 NSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTD 561

Query: 141 Q-GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199
           + G+ P+   +         AC                        +IDM G+ G    A
Sbjct: 562 RYGLTPTPSHY---------AC------------------------MIDMLGRNGRFAEA 588

Query: 200 FGVFLNME-ELDIISWNSLISGC---FNSGYGELALDQFYSM 237
             +  NM  E D++ W +L++ C    N   G+LA D+   +
Sbjct: 589 LRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMEL 630


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 179/579 (30%), Positives = 288/579 (49%), Gaps = 53/579 (9%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  L  Y R G  ++ +++F+ +  K  +S++  + G  K   +  A  +FD +PE +V+
Sbjct: 181 NVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRMPERNVI 240

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVSSACH-------GKQ 165
           +W +MI GY   G+ +    +F +M+ +G VR +  T +++      AC        G Q
Sbjct: 241 TWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFR----ACRDFFRYREGSQ 296

Query: 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSG 225
           IHG + R  L   ++ LGNSLI MY KLG +  A  VF  M+  D +SWNSLI+G     
Sbjct: 297 IHGLLSRMPLEF-DLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQRE 355

Query: 226 YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLS 285
               A + F  M                           GK +             +  +
Sbjct: 356 QISEAYELFEKM--------------------------PGKDM-------------VSWT 376

Query: 286 ATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345
             I  FS    +   V LF  +   D      MIS +   G+ E AL  F  MLR+ + P
Sbjct: 377 DMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCP 436

Query: 346 TEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404
             +T S VLS+   +  +  G Q H   +K    ++  V +SL+ MY K G+ + + +IF
Sbjct: 437 NSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIF 496

Query: 405 VKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464
             + + ++VS+NT++ G + NG   E + +F  L   G  P+ +T  A+L AC + G+VD
Sbjct: 497 SCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYVD 556

Query: 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524
            G   F +MK  YG+ PG +HYAC++DL  ++G L +A ++ STMP +P   +W S+L A
Sbjct: 557 LGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSA 616

Query: 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVT 584
           S  +  V L E  A+++++L+  S  PY +L+Q Y+M G+     R+  + +   I K  
Sbjct: 617 SKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSMVGKNSDCDRIMNIKKSKRIKKDP 676

Query: 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           G SWI +K +++ F AG+  H   ++I   L ++  EME
Sbjct: 677 GSSWIILKGQVHNFLAGDESHLNLEEIAFTLDMIGNEME 715



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 155/318 (48%), Gaps = 36/318 (11%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C  F  +     IHG L ++      +LGN  + +YS+ G   +   +F  +  K+ +SW
Sbjct: 285 CRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSW 344

Query: 85  NICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYA--------------------- 123
           N  + GL++ + +  A ++F+++P  D+VSW  MI G++                     
Sbjct: 345 NSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDI 404

Query: 124 ----------SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSM 170
                     S GY + AL  F KM  + V P+ +TFS +LS  +S      G QIHG +
Sbjct: 405 TWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRV 464

Query: 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELA 230
           ++  ++ +++ + NSL+ MY K G    A+ +F  + E +I+S+N++ISG   +G+G+ A
Sbjct: 465 VKMNMA-NDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEA 523

Query: 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF-ALSVKVGFLSNSIVLSATID 289
           +  F  +  +G  P+  T   +++AC  +  +D G + F ++    G        +  +D
Sbjct: 524 VKLFSMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVD 583

Query: 290 LFSKCNRLEDSVRLFEQL 307
           LF +   L+++  L   +
Sbjct: 584 LFGRSGLLDEAYNLISTM 601



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL-LEEGLPPDRITL 450
           A+ G++  +  IF ++  R +VSWN ++    +NG+ ++   VF+E+ +      + +  
Sbjct: 61  ARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATTSYNAMIT 120

Query: 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510
           A +   C+ G    K   +F  + E+  V      YA +I    +AG+  +A  + +  P
Sbjct: 121 AMIKNKCDLG----KAYELFCDIPEKNAV-----SYATMITGFVRAGRFDEAECLYAETP 171

Query: 511 FQPGCSIWESILRASAIYGDVKLTE-NVAERMMD-LQLPSPLPYSLLTQAYAMRGR 564
            +    +  ++L    + G +++ + N A R+ + + +   + YS +   Y   GR
Sbjct: 172 VKFRDPVASNVL----LSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGR 223


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/540 (30%), Positives = 285/540 (52%), Gaps = 18/540 (3%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS- 151
           K   L  A ++FD +P  + VS N ++SGYAS G    AL +         + + F+ + 
Sbjct: 57  KCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALALL--------KAADFSLNE 108

Query: 152 -ILLSTVSSACH------GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
            +L + +S+A H      G+Q HG  ++SGL     V  N+++ MY +   +  A  VF 
Sbjct: 109 YVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVC-NAVLHMYCQCAHVEDAVKVFE 167

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
           N+   DI ++NS+I+G  + G  + ++    SM       D  +   V+  C   + L  
Sbjct: 168 NVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLL 227

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G QV A ++K     N  V SA +D++ KC+   D+   FE L   +      +++ Y +
Sbjct: 228 GCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQ 287

Query: 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVV 383
               E AL+LF  +  E +RP EFT +  L+S   +  +++G+   + A+K+G      V
Sbjct: 288 NERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSV 347

Query: 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443
            ++LM MY+K+GSI  +  +F+ +  RD+VSWN++++G   +G A E + VF ++L   +
Sbjct: 348 CNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEI 407

Query: 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503
            P  +T   VLLAC   G VD+G+   + M +E G+ PG EHY C++ LLC+AG+L +A 
Sbjct: 408 VPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAE 467

Query: 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563
               +         W+S+L +  +Y +  L   VAE+++ L+      Y LL+  YA   
Sbjct: 468 QFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKAN 527

Query: 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623
           RW+ +V+V+K+MR+ G+ K  G SWI + + ++ F + +  H    +I + L+ L  +++
Sbjct: 528 RWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIK 587



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 183/374 (48%), Gaps = 16/374 (4%)

Query: 161 CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISG 220
           C GK IH  MIR+  +  +V+  N LI  YGK G L  A  +F  M   + +S N L+SG
Sbjct: 28  CTGKAIHAQMIRA--AHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSG 85

Query: 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN 280
             ++G      D    ++ + +S +EY +S  ++A   +R+   G+Q    +VK G   +
Sbjct: 86  YASAGRHS---DALALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEH 142

Query: 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340
             V +A + ++ +C  +ED+V++FE +  +D    N MI+ +   G  + ++ + + M+ 
Sbjct: 143 PYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVG 202

Query: 341 EDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399
           E  +    +   VL        +  G Q H+ A+K   + N  V S+L++MY K      
Sbjct: 203 EVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARD 262

Query: 400 STEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC-N 458
           +   F  L ++++VSW  +M   TQN R  + L +F +L  EG+ P+  T A  L +C  
Sbjct: 263 AHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAG 322

Query: 459 YGGFVDKGMLVFSAMKE-EYGVMPGEEHYAC--IIDLLCQAGQLGKAIDITSTMPFQPGC 515
                +   L  SAMK   +G +       C  ++++  ++G +  A  +  +MP++   
Sbjct: 323 LAALKNGNALSASAMKTGHWGALS-----VCNALMNMYSKSGSIHDAWRVFLSMPWRDVV 377

Query: 516 SIWESILRASAIYG 529
           S W S++   A +G
Sbjct: 378 S-WNSVIIGYAHHG 390



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 180/398 (45%), Gaps = 40/398 (10%)

Query: 29  KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICL 88
           +S+   +  HG+  K G   H Y+ N  L +Y +    +D +++F+ +   +  ++N  +
Sbjct: 122 RSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMI 181

Query: 89  RGLLKSDNLDTALKV----FDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
            G L     D ++++      E+ + D VS+ +++   AS                    
Sbjct: 182 NGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCAS-------------------- 221

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
               T  +LL        G Q+H   ++  L   NV +G++L+DMYGK      A   F 
Sbjct: 222 ----TKELLL--------GCQVHAQALKRRLE-QNVYVGSALVDMYGKCDCARDAHSAFE 268

Query: 205 NMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264
            + E +++SW ++++    +   E AL  F  +   G  P+E+T ++ +N+C  L  L  
Sbjct: 269 VLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKN 328

Query: 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324
           G  + A ++K G      V +A ++++SK   + D+ R+F  +   D    N +I  Y  
Sbjct: 329 GNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAH 388

Query: 325 YGFGEVALELFQLMLREDIRPTEFT-LSCVLSSIPIPPVEHGSQFHSMAIKS-GFDSNAV 382
           +G    A+ +F  ML  +I P+  T +  +L+   +  V+ G  + ++ +K  G      
Sbjct: 389 HGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGRE 448

Query: 383 VASSLMEMYAKTGSIDSSTE-IFVKLDKRDLVSWNTIM 419
             + ++ +  + G +D + + I       D+V+W +++
Sbjct: 449 HYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLL 486



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 149/326 (45%), Gaps = 41/326 (12%)

Query: 21  LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN 80
           ++  C S K       +H    K     + Y+G+  +D+Y +   + D    F+ +P+KN
Sbjct: 215 VLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKN 274

Query: 81  CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQL 140
            +SW   +    +++  +                                AL++F  +++
Sbjct: 275 VVSWTAVMTAYTQNERFED-------------------------------ALQLFLDLEI 303

Query: 141 QGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197
           +GVRP+ FT+++ L++   +++  +G  +  S +++G     + + N+L++MY K G ++
Sbjct: 304 EGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTG-HWGALSVCNALMNMYSKSGSIH 362

Query: 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257
            A+ VFL+M   D++SWNS+I G  + G    A+  F+ M  +   P   T   V+ AC 
Sbjct: 363 DAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACA 422

Query: 258 KLRNLDKGKQVFALSVK-VGFLSNSIVLSATIDLFSKCNRLEDSVR-LFEQLDRWDYAVI 315
           +L  +D+G     + +K +G        +  + L  +  RL+++ + +       D    
Sbjct: 423 QLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAW 482

Query: 316 NVMIST---YGRYGFGE-VALELFQL 337
             ++S+   Y  YG G  VA ++ QL
Sbjct: 483 KSLLSSCQVYKNYGLGHRVAEQILQL 508


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/565 (27%), Positives = 294/565 (52%), Gaps = 19/565 (3%)

Query: 54  NRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVV 113
           N  +  Y   G   +  QLFDE+ ++N +SWN  + G +K+  +  A  VF+ +PE +VV
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRS 173
           SW +M+ GY   G    A  +F +M  +        F  L+        G+      +  
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLID------DGRIDKARKLYD 165

Query: 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ 233
            + + +VV   ++I    + G +  A  +F  M E ++++W ++I+G   +   ++A   
Sbjct: 166 MMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKL 225

Query: 234 FYSMRYSGYSPDEYTISI--VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF 291
           F  M      P++  +S   ++   T    ++  ++ F    +V  +   I  +A I  F
Sbjct: 226 FEVM------PEKTEVSWTSMLLGYTLSGRIEDAEEFF----EVMPMKPVIACNAMIVGF 275

Query: 292 SKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351
            +   +  + R+F+ ++  D A    MI  Y R GF   AL+LF  M ++ +RP+  +L 
Sbjct: 276 GEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLI 335

Query: 352 CVLS-SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR 410
            +LS    +  +++G Q H+  ++  FD +  VAS LM MY K G +  +  +F +   +
Sbjct: 336 SILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK 395

Query: 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470
           D++ WN+I+ G   +G   E L +F E+   G  P+++TL A+L AC+Y G +++G+ +F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455

Query: 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGD 530
            +M+ ++ V P  EHY+C +D+L +AGQ+ KA+++  +M  +P  ++W ++L A   +  
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSR 515

Query: 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIG 590
           + L E  A+++ + +  +   Y LL+   A R +W  +  V+K MR N ++K  GCSWI 
Sbjct: 516 LDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIE 575

Query: 591 IKNRIYTFNAGELQHHGGQKIYLVL 615
           +  +++ F  G +++H  Q + L++
Sbjct: 576 VGKKVHMFTRGGIKNHPEQAMILMM 600



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 25  CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISW 84
           C +  S  + + +H HL +  F+   Y+ +  + +Y + G       +FD    K+ I W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 85  NICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
           N  + G       + ALK+F E+P     P+ V+  ++++  +  G  +  LE+F  M+
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESME 459


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 178/606 (29%), Positives = 295/606 (48%), Gaps = 43/606 (7%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+  +  C    +    K IHG +   G  +   L N  +D+YS+ G  D    LFD   
Sbjct: 163 CAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDH-- 220

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                           SD LD              VSWNS+I+GY   G  +  L +  K
Sbjct: 221 ----------------SDKLDG-------------VSWNSLIAGYVQNGKYEELLTILQK 251

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSM-----IRSGLSLSNVVLGNSLIDMYGK 192
           M   G+  + +T    L   SS  +G ++ G+M     I+ GL L +VV+G +L+DMY K
Sbjct: 252 MHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHL-DVVVGTALLDMYAK 310

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE-----LALDQFYSMRYSGYSPDEY 247
            G L  A  +F  M + +++ +N++++G       E      AL+ F+ M+  G  P  +
Sbjct: 311 TGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMF 370

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S ++ AC  + +    KQV AL  K G LS+  + S  IDL+S    + D++  F  +
Sbjct: 371 TYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSI 430

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
                  +  MI  Y + G  E AL LF  +L  + +P EF  S ++SS   +  +  G 
Sbjct: 431 HNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLRSGE 490

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q    A K G     +  +S + MYAK+G + ++   F +++  D+VSW+T++    Q+G
Sbjct: 491 QIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHG 550

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
            A E L  FE +   G+ P+      VL+AC++ G V++G+  F  M+++Y +    +H 
Sbjct: 551 HAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHC 610

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL +AG+L  A  +   + F+    +W ++L A  I+ D    + VA+++++L+ 
Sbjct: 611 VCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEP 670

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            +   Y LL   Y   G   A  +V+ +M +  I K  G SWI I +++Y+F +G+  H 
Sbjct: 671 LASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDRSHK 730

Query: 607 GGQKIY 612
              +IY
Sbjct: 731 NSGQIY 736



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 220/458 (48%), Gaps = 43/458 (9%)

Query: 20  QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK 79
           +L+         +  K +H H+ K  F    +L N  L++Y + G +             
Sbjct: 64  KLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTR------------ 111

Query: 80  NCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQ 139
                              +A K+FD++ + ++V++NS+ISGY      D  + +F K +
Sbjct: 112 -------------------SADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKAR 152

Query: 140 LQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL 196
             G++   +T +  L+  S + +   GK IHG ++  GL  S VVL NSLIDMY K G +
Sbjct: 153 RLGLKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYGLG-SQVVLTNSLIDMYSKCGQV 211

Query: 197 YYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256
            YA  +F + ++LD +SWNSLI+G   +G  E  L     M  +G + + YT+   + AC
Sbjct: 212 DYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKAC 271

Query: 257 TKLRNLDK--GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAV 314
           +   N  K  G  +   ++K+G   + +V +A +D+++K   L+D++++F+Q+   +  +
Sbjct: 272 SSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVM 331

Query: 315 INVMISTYGRYGFGE-----VALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQF 368
            N M++   +    E      AL LF  M    I+P+ FT S +L + I +   +   Q 
Sbjct: 332 YNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQV 391

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRA 428
           H++  K+G  S+  + S L+++Y+  GS+  +   F  +    +V    ++ G  QNG  
Sbjct: 392 HALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEF 451

Query: 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466
              L +F ELL     PD    + ++ +C   G +  G
Sbjct: 452 ESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLRSG 489



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 35/345 (10%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++L  CS   + C  F +      +H H  KLG +    +G   LD+Y++ G+ DD +Q+
Sbjct: 266 SALKACSSNFNGCKMFGTM-----LHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQI 320

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD++  KN + +N  + GLL+ + ++                          C Y   AL
Sbjct: 321 FDQMVDKNVVMYNAMMAGLLQQETIED------------------------KCAYK--AL 354

Query: 133 EMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F +M+  G++PS FT+S LL     V      KQ+H  M ++GL LS+  +G+ LID+
Sbjct: 355 NLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGL-LSDEYIGSILIDL 413

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y  LG +  A   F ++  L I+   ++I G   +G  E AL  FY +      PDE+  
Sbjct: 414 YSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIX 473

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S ++++C  +  L  G+Q+   + KVG    +I  ++ I +++K   L  +   F+Q++ 
Sbjct: 474 STIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMEN 533

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
            D    + MI +  ++G    AL  F+LM    I P  F    VL
Sbjct: 534 PDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVL 578



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 159/342 (46%), Gaps = 19/342 (5%)

Query: 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD 311
           ++ + TK   L+ GK V +  +K  F     + +  ++++ KC     + +LF+++ + +
Sbjct: 65  LVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSN 124

Query: 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-PVEHGSQFHS 370
               N +IS Y +    +  + LF    R  ++  ++T +  L++      +  G   H 
Sbjct: 125 IVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHG 184

Query: 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430
           + +  G  S  V+ +SL++MY+K G +D +  +F   DK D VSWN+++ G  QNG+  E
Sbjct: 185 LILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEE 244

Query: 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI- 489
            L + +++ + GL  +  TL + L AC+   F   G  +F  M  ++ +  G      + 
Sbjct: 245 LLTILQKMHQNGLAFNTYTLGSALKACS-SNF--NGCKMFGTMLHDHAIKLGLHLDVVVG 301

Query: 490 ---IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
              +D+  + G L  AI I   M       ++ +++  + +     + +  A + ++L  
Sbjct: 302 TALLDMYAKTGSLDDAIQIFDQM-VDKNVVMYNAMM--AGLLQQETIEDKCAYKALNLFF 358

Query: 547 --------PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
                   PS   YS L +A  +   ++   +V  +M KNG+
Sbjct: 359 EMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGL 400



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 131/307 (42%), Gaps = 50/307 (16%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K S+   S L+  C+  + F FAK +H  + K G  +  Y+G+  +DLYS  G+  D L 
Sbjct: 366 KPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALL 425

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEI----PEPDVVSWNSMISGYASCGY 127
            F+ I     +     + G L++   ++AL +F E+     +PD    ++++S  A+ G 
Sbjct: 426 CFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANMG- 484

Query: 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLI 187
                                   +L S       G+QI G   + G+S    +  NS I
Sbjct: 485 ------------------------MLRS-------GEQIQGHATKVGIS-RFTIFQNSQI 512

Query: 188 DMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY 247
            MY K G LY A   F  ME  DI+SW+++I      G+   AL  F  M+  G  P+ +
Sbjct: 513 WMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHF 572

Query: 248 TISIVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300
               V+ AC+        LR  D  ++ + + + V            +DL  +  RL D+
Sbjct: 573 AFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKH------CVCVVDLLGRAGRLADA 626

Query: 301 VRLFEQL 307
             L  +L
Sbjct: 627 ESLILRL 633


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/485 (30%), Positives = 270/485 (55%), Gaps = 10/485 (2%)

Query: 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCF 222
           G+++H  MI++   L  V L   LI +Y K   L  A  VF  M E +++SW ++ISG  
Sbjct: 29  GQRVHAHMIKT-CYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYS 87

Query: 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282
             G+   AL  F  M  S   P+E+T + V+++CT     + G+Q+ +   K  + ++  
Sbjct: 88  QRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIF 147

Query: 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342
           V S+ +D+++K  R+ ++  +FE L   D      +IS Y + G  E ALELF  + RE 
Sbjct: 148 VGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREG 207

Query: 343 IRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401
           +     T + +L+++  +  ++HG Q HS  ++       V+ +SL++MY+K G+++ + 
Sbjct: 208 MSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYAR 267

Query: 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYG 460
           +IF  +  R ++SWN +++G +++G+  E + +F+ + EE  + PD +T  AVL  C++G
Sbjct: 268 KIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHG 327

Query: 461 GFVDKGMLVFSAMKEEYG-VMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWE 519
           G  DKG+ +F  M      +  G EHY C+IDLL +AG++ +A ++   MPF+P  +IW 
Sbjct: 328 GLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWG 387

Query: 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
           S+L A  ++ +  + E V  R+++++  +   Y +L+  YA  GRWE +  V+++M +  
Sbjct: 388 SLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKA 447

Query: 580 INKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME------DEGCVYLECD 633
           + K  G SWI +   I+TF A +  H   ++++L +R L  + +      D+ CV  + D
Sbjct: 448 VIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVD 507

Query: 634 KLDVE 638
           +   E
Sbjct: 508 EEQKE 512



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 193/396 (48%), Gaps = 39/396 (9%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           + L++ C++ ++    + +H H+ K  +    YL  R + LY+                 
Sbjct: 14  NMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYT----------------- 56

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKM 138
                         K + L  A  VFDE+ E +VVSW +MISGY+  G++  AL +F +M
Sbjct: 57  --------------KCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQM 102

Query: 139 QLQGVRPSGFTFSILLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195
                 P+ FTF+ +LS+ +       G+QIH  + +     +++ +G+SL+DMY K G 
Sbjct: 103 LRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYE-NHIFVGSSLLDMYAKAGR 161

Query: 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255
           ++ A GVF  + E D++S  ++ISG    G  E AL+ F  ++  G S +  T + ++ A
Sbjct: 162 IHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTA 221

Query: 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315
            + L  LD GKQV +  ++       ++ ++ ID++SKC  L  + ++F  +        
Sbjct: 222 LSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISW 281

Query: 316 NVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVE-HGSQFHSMAI 373
           N M+  Y ++G G   ++LF+LM  E+ ++P   T   VLS      +E  G +     +
Sbjct: 282 NAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMM 341

Query: 374 KSGFDSNAVVA--SSLMEMYAKTGSIDSSTEIFVKL 407
             G +  A +     ++++  + G ++ + E+  K+
Sbjct: 342 NGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKM 377



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 150/298 (50%), Gaps = 18/298 (6%)

Query: 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296
           +++ GY+       +++N C   R + +G++V A  +K  +L    + +  I L++KC  
Sbjct: 8   IKFDGYN-------MLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 297 LEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356
           L  +  +F+++   +      MIS Y + GF   AL LF  MLR D  P EFT + VLSS
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 357 IP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSW 415
                  E G Q HS   K  ++++  V SSL++MYAK G I  +  +F  L +RD+VS 
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS-AMK 474
             I+ G  Q G   E L++F  L  EG+  + +T A++L A +    +D G  V S  ++
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 475 EE---YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYG 529
            E   Y V+        +ID+  + G L  A  I + MP +   S W ++L   + +G
Sbjct: 241 CELPFYVVLQNS-----LIDMYSKCGNLNYARKIFNNMPVRTVIS-WNAMLVGYSKHG 292



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 40/209 (19%)

Query: 30  SFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89
           + D  K +H H+ +     +  L N  +D+YS+ G  +   ++F+ +P +  ISWN  L 
Sbjct: 227 ALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLV 286

Query: 90  GLLKSDNLDTALKVFDEIPE-----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVR 144
           G  K       +K+F  + E     PD V++ +++SG +  G  D  LEMF +M + G  
Sbjct: 287 GYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEM-MNG-- 343

Query: 145 PSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFL 204
                                  G  I +G+     V     ID+ G+ G +  AF +  
Sbjct: 344 -----------------------GDEIEAGIEHYGCV-----IDLLGRAGRVEEAFELIK 375

Query: 205 NME-ELDIISWNSLISGCF---NSGYGEL 229
            M  E     W SL+  C    N+  GE 
Sbjct: 376 KMPFEPTAAIWGSLLGACRVHSNTNIGEF 404


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 250/452 (55%), Gaps = 3/452 (0%)

Query: 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221
            G Q+H  +++ GL    +V  N LI++Y K  +  ++  VF    +    +W+S+IS  
Sbjct: 43  QGLQLHAHILKFGLQTIPLVSHN-LINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAF 101

Query: 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281
             +    LAL  F  M   G  PD++       AC  LR  D GK V  L+VK G+  + 
Sbjct: 102 AQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDV 161

Query: 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341
            V S+ +D+++KC  + D+  LF+++   +    + MI  Y +   G  AL LF+  L E
Sbjct: 162 FVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIE 221

Query: 342 DIRPTEFTLSCVLSSIPIPP-VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400
           D+   +FT S V+        +E G   H + +K  FDS++ V S+L+ +Y+K G I+ +
Sbjct: 222 DVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGA 281

Query: 401 TEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460
            ++F ++  R+L  WN++++   Q+        +FEE+   G+ P+ I   +VL AC++ 
Sbjct: 282 YQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHA 341

Query: 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520
           G V+KG   FS M++ YG+ P  EHYA ++DLL +AG+L +A+ +   MP +P  S+W +
Sbjct: 342 GLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGA 400

Query: 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580
           +L    I+ D ++   VA+R++++   S   + LL+ AYA  GR+E   R++K++R  G+
Sbjct: 401 LLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGV 460

Query: 581 NKVTGCSWIGIKNRIYTFNAGELQHHGGQKIY 612
            K TG SW+   N+++TF AG+  H    +IY
Sbjct: 461 KKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 184/414 (44%), Gaps = 48/414 (11%)

Query: 20  QLIDRCLSF---KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI 76
           Q+ +  LSF   +S      +H H+ K G      + +  ++LYS+       L LF   
Sbjct: 27  QICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSK-----TQLPLF--- 78

Query: 77  PQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFS 136
                                  +L+VFDE P+    +W+S+IS +A       AL+ F 
Sbjct: 79  -----------------------SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFR 115

Query: 137 KMQLQGVRPSGFTFSILLSTVSSACH-------GKQIHGSMIRSGLSLSNVVLGNSLIDM 189
           +M   GVRP    +     + + AC        GK +H   +++G    +V +G+SL+DM
Sbjct: 116 RMLNDGVRPDDHIY----PSATKACGFLRRSDVGKSVHCLAVKTGY-YCDVFVGSSLVDM 170

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y K G +  A  +F  M E +++SW+ +I G      G  AL  F          +++T 
Sbjct: 171 YAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTF 230

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S VI  C+    L+ GK +  L +K+ F S+S V SA I L+SKC  +E + ++F+++  
Sbjct: 231 SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT 290

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPP-VEHGSQF 368
            +  + N M+    ++   +    LF+ M    ++P       VL +      VE G ++
Sbjct: 291 RNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREY 350

Query: 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS-WNTIMMG 421
            S+    G +      +SL+++  + G +  +  +  ++  R   S W  ++ G
Sbjct: 351 FSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 38/208 (18%)

Query: 19  SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78
           S +I  C S    +  K IHG   K+ F++ +++G+  + LYS+ G  +   Q+FDEIP 
Sbjct: 231 SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPT 290

Query: 79  KNCISWNICLRGLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEM 134
           +N   WN  L    +  +      +F+E+     +P+ + + S++   +  G  +   E 
Sbjct: 291 RNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREY 350

Query: 135 FSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194
           FS M+  G+ P    ++                                 SL+D+ G+ G
Sbjct: 351 FSLMRDYGIEPETEHYA---------------------------------SLVDLLGRAG 377

Query: 195 VLYYAFGVFLNMEELDIIS-WNSLISGC 221
            L  A  V   M      S W +L++GC
Sbjct: 378 KLQEAVSVIKQMPMRPTESVWGALLTGC 405


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 296/609 (48%), Gaps = 43/609 (7%)

Query: 18  CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77
           C+  +  C    +    K IHG +   G  +   L N  +D+YS+ G  D    LFD   
Sbjct: 70  CAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDH-- 127

Query: 78  QKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSK 137
                           SD LD              VSWNS+I+GY   G  +  L +  K
Sbjct: 128 ----------------SDKLDG-------------VSWNSLIAGYVQNGKYEELLTILQK 158

Query: 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSM-----IRSGLSLSNVVLGNSLIDMYGK 192
           M   G+  + +T    L   SS  +G ++ G+M     I+ GL L +VV+G +L+DMY K
Sbjct: 159 MHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHL-DVVVGTALLDMYAK 217

Query: 193 LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGE-----LALDQFYSMRYSGYSPDEY 247
            G L  A  +F  M + +++ +N++++G       E      AL+ F+ M+  G  P  +
Sbjct: 218 TGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMF 277

Query: 248 TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307
           T S ++ AC  + +    KQV AL  K G LS+  + S  IDL+S    + D++  F  +
Sbjct: 278 TYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSI 337

Query: 308 DRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGS 366
                  +  MI  Y + G  E AL LF  +L  + +P EF  S ++SS   +  +  G 
Sbjct: 338 HNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGE 397

Query: 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNG 426
           Q    A K G     +  +S + MYAK+G + ++   F +++  D+VSW+T++    Q+G
Sbjct: 398 QIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHG 457

Query: 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY 486
            A E L  FE +   G+ P+      VL+AC++ G V++G+  F  M+++Y +    +H 
Sbjct: 458 HAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHC 517

Query: 487 ACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546
            C++DLL +AG+L  A  +   + F+    +W ++L A  I+ D    + VA+++++L+ 
Sbjct: 518 VCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEP 577

Query: 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHH 606
            +   Y LL   Y   G   A  +V+ +M +  I K  G SWI I +++Y+F +G+  H 
Sbjct: 578 LASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWIQIGDKVYSFVSGDRSHK 637

Query: 607 GGQKIYLVL 615
              +IY  L
Sbjct: 638 NSGQIYAKL 646



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 242/502 (48%), Gaps = 23/502 (4%)

Query: 93  KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152
           K  +  +A K+FD++ + ++V++NS+ISGY      D  + +F K +  G++   +  + 
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 153 LLSTVSSACH---GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209
            L+  S + +   GK IHG ++  GL  S VVL NSLIDMY K G + YA  +F + ++L
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLG-SQVVLTNSLIDMYSKCGQVDYARILFDHSDKL 131

Query: 210 DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK--GKQ 267
           D +SWNSLI+G   +G  E  L     M  +G + + YT+   + AC+   N  K  G  
Sbjct: 132 DGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTM 191

Query: 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327
           +   ++K+G   + +V +A +D+++K   L+D++++F+Q+   +  + N M++   +   
Sbjct: 192 LHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQET 251

Query: 328 GE-----VALELFQLMLREDIRPTEFTLSCVLSS-IPIPPVEHGSQFHSMAIKSGFDSNA 381
            E      AL LF  M    I+P+ FT S +L + I +   +   Q H++  K+G  S+ 
Sbjct: 252 IEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDE 311

Query: 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441
            + S L+++Y+  GS+  +   F  +    +V    ++ G  QNG     L +F ELL  
Sbjct: 312 YIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTY 371

Query: 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQAG 497
              PD    + ++ +C      + GML      + +    G   +       I +  ++G
Sbjct: 372 EEKPDEFIFSTIMSSC-----ANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSG 426

Query: 498 QLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL-PSPLPYSLLT 556
            L  A ++T      P    W +++ ++A +G         E M    + P+   +  + 
Sbjct: 427 DL-YAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVL 485

Query: 557 QAYAMRGRWEAIVRVKKVMRKN 578
            A + RG  E  +R    M K+
Sbjct: 486 IACSHRGLVEEGLRYFDTMEKD 507



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 35/345 (10%)

Query: 13  ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQL 72
           ++L  CS   + C  F +      +H H  KLG +    +G   LD+Y++ G+ DD +Q+
Sbjct: 173 SALKACSSNFNGCKMFGTM-----LHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQI 227

Query: 73  FDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYAL 132
           FD++  KN + +N  + GLL+ + ++                          C Y   AL
Sbjct: 228 FDQMVDKNVVMYNAMMAGLLQQETIED------------------------KCAYK--AL 261

Query: 133 EMFSKMQLQGVRPSGFTFSILLST---VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189
            +F +M+  G++PS FT+S LL     V      KQ+H  M ++GL LS+  +G+ LID+
Sbjct: 262 NLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGL-LSDEYIGSILIDL 320

Query: 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249
           Y  LG +  A   F ++  L I+   ++I G   +G  E AL  FY +      PDE+  
Sbjct: 321 YSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIF 380

Query: 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309
           S ++++C  +  L  G+Q+   + KVG    +I  ++ I +++K   L  +   F+Q++ 
Sbjct: 381 STIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMEN 440

Query: 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354
            D    + MI +  ++G    AL  F+LM    I P  F    VL
Sbjct: 441 PDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVL 485



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 130/306 (42%), Gaps = 48/306 (15%)

Query: 12  KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQ 71
           K S+   S L+  C+  + F FAK +H  + K G  +  Y+G+  +DLYS  G+  D   
Sbjct: 273 KPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMD--- 329

Query: 72  LFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131
                                       AL  F+ I    +V   +MI GY   G  + A
Sbjct: 330 ----------------------------ALLCFNSIHNLTIVPMTAMIFGYLQNGEFESA 361

Query: 132 LEMFSKMQLQGVRPSGFTFSILLSTVSSAC---HGKQIHGSMIRSGLSLSNVVLGNSLID 188
           L +F ++     +P  F FS ++S+ ++      G+QI G   + G+S    +  NS I 
Sbjct: 362 LSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGIS-RFTIFQNSQIW 420

Query: 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248
           MY K G LY A   F  ME  DI+SW+++I      G+   AL  F  M+  G  P+ + 
Sbjct: 421 MYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFA 480

Query: 249 ISIVINACTK-------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301
              V+ AC+        LR  D  ++ + + + V            +DL  +  RL D+ 
Sbjct: 481 FLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKH------CVCVVDLLGRAGRLADAE 534

Query: 302 RLFEQL 307
            L  +L
Sbjct: 535 SLILRL 540



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 138/301 (45%), Gaps = 19/301 (6%)

Query: 293 KCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352
           KC     + +LF+++ + +    N +IS Y +    +  + LF    R  ++  ++  + 
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 353 VLSSIPIP-PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD 411
            L++      +  G   H + +  G  S  V+ +SL++MY+K G +D +  +F   DK D
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471
            VSWN+++ G  QNG+  E L + +++ + GL  +  TL + L AC+   F   G  +F 
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACS-SNF--NGCKMFG 189

Query: 472 AMKEEYGVMPGEEHYACI----IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527
            M  ++ +  G      +    +D+  + G L  AI I   M       ++ +++  + +
Sbjct: 190 TMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQM-VDKNVVMYNAMM--AGL 246

Query: 528 YGDVKLTENVAERMMDLQL--------PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579
                + +  A + ++L          PS   YS L +A  +   ++   +V  +M KNG
Sbjct: 247 LQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNG 306

Query: 580 I 580
           +
Sbjct: 307 L 307


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,862,513,336
Number of Sequences: 23463169
Number of extensions: 405107927
Number of successful extensions: 1057371
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8977
Number of HSP's successfully gapped in prelim test: 2487
Number of HSP's that attempted gapping in prelim test: 850651
Number of HSP's gapped (non-prelim): 66207
length of query: 640
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 491
effective length of database: 8,863,183,186
effective search space: 4351822944326
effective search space used: 4351822944326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)