Query 006580
Match_columns 640
No_of_seqs 620 out of 4131
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 11:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-96 2E-100 799.8 72.7 623 12-637 149-779 (857)
2 PLN03081 pentatricopeptide (PP 100.0 7.9E-81 1.7E-85 665.5 63.6 526 109-635 84-614 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-80 4.1E-85 678.7 62.1 570 10-584 46-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.1E-66 4.6E-71 555.4 59.9 503 47-585 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.3E-66 7.1E-71 553.1 51.4 466 13-482 85-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.5E-65 5.4E-70 547.2 55.0 520 11-546 366-911 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-33 5.2E-38 315.6 62.7 549 19-580 299-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.4E-33 1.6E-37 311.6 62.8 547 17-575 331-897 (899)
9 PRK11447 cellulose synthase su 100.0 2.3E-24 5.1E-29 242.4 62.2 557 5-577 51-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-23 3.1E-28 236.1 57.3 549 18-580 31-702 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 7.8E-21 1.7E-25 204.1 59.9 534 27-579 56-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 7.4E-20 1.6E-24 196.6 55.0 556 6-583 68-745 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.2E-20 2.6E-25 179.6 37.3 384 176-570 112-511 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-19 3.3E-24 172.2 31.5 427 53-525 51-500 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-18 1E-22 179.8 43.5 419 114-579 129-572 (615)
16 PRK11788 tetratricopeptide rep 99.9 2.8E-19 6E-24 179.9 31.7 292 257-587 46-356 (389)
17 KOG2002 TPR-containing nuclear 99.9 8.2E-17 1.8E-21 162.0 44.4 549 21-581 168-801 (1018)
18 PRK10049 pgaA outer membrane p 99.8 1.8E-16 4E-21 170.8 46.0 367 177-579 46-457 (765)
19 PRK11788 tetratricopeptide rep 99.8 2.3E-18 5E-23 173.3 29.5 270 177-484 66-354 (389)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.7E-21 169.1 42.2 418 84-550 130-577 (615)
21 PRK15174 Vi polysaccharide exp 99.8 8.5E-17 1.9E-21 169.6 40.3 350 192-549 17-386 (656)
22 PRK14574 hmsH outer membrane p 99.8 2.9E-15 6.4E-20 158.1 47.2 439 53-550 38-519 (822)
23 KOG4422 Uncharacterized conser 99.8 1.9E-15 4.2E-20 138.4 39.2 326 17-383 118-470 (625)
24 PRK15174 Vi polysaccharide exp 99.8 2.9E-16 6.3E-21 165.5 38.0 352 222-581 16-384 (656)
25 KOG2002 TPR-containing nuclear 99.8 2.4E-15 5.1E-20 151.7 42.0 415 159-580 285-747 (1018)
26 PRK10049 pgaA outer membrane p 99.8 1.9E-15 4.2E-20 163.0 44.9 412 3-476 3-456 (765)
27 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.2E-19 132.7 39.3 425 112-582 116-594 (625)
28 KOG0495 HAT repeat protein [RN 99.8 4.3E-13 9.4E-18 129.6 49.6 539 29-589 265-855 (913)
29 KOG2003 TPR repeat-containing 99.8 9.9E-16 2.1E-20 141.2 30.3 502 18-564 165-709 (840)
30 PRK14574 hmsH outer membrane p 99.8 8.7E-14 1.9E-18 147.1 44.6 434 23-488 42-522 (822)
31 KOG2076 RNA polymerase III tra 99.7 3.7E-13 7.9E-18 135.3 44.2 564 16-580 140-851 (895)
32 KOG4318 Bicoid mRNA stability 99.7 2.7E-14 5.8E-19 142.5 34.5 519 36-582 11-598 (1088)
33 KOG0495 HAT repeat protein [RN 99.7 1.9E-11 4E-16 118.6 46.8 367 213-591 518-891 (913)
34 PF13429 TPR_15: Tetratricopep 99.7 6E-16 1.3E-20 147.1 11.0 252 321-577 17-276 (280)
35 KOG2076 RNA polymerase III tra 99.6 2.3E-11 4.9E-16 122.7 42.6 516 58-579 147-770 (895)
36 KOG2003 TPR repeat-containing 99.6 1.3E-13 2.9E-18 127.4 24.7 426 148-579 199-690 (840)
37 KOG0547 Translocase of outer m 99.6 1.7E-11 3.7E-16 114.9 31.4 212 360-577 340-565 (606)
38 KOG4318 Bicoid mRNA stability 99.5 6.3E-11 1.4E-15 119.0 35.0 471 77-578 21-557 (1088)
39 KOG1915 Cell cycle control pro 99.5 1.1E-09 2.4E-14 102.6 40.7 489 80-576 72-623 (677)
40 PRK10747 putative protoheme IX 99.5 2.2E-11 4.8E-16 121.2 31.8 284 224-544 97-390 (398)
41 KOG1126 DNA-binding cell divis 99.5 2.1E-12 4.5E-17 126.0 22.1 277 296-580 334-622 (638)
42 KOG2047 mRNA splicing factor [ 99.5 1.2E-08 2.5E-13 99.5 46.6 509 23-568 110-713 (835)
43 KOG1155 Anaphase-promoting com 99.5 2.1E-10 4.5E-15 107.2 32.9 355 177-577 161-535 (559)
44 TIGR00540 hemY_coli hemY prote 99.5 6.3E-11 1.4E-15 118.7 31.4 290 222-542 95-397 (409)
45 COG2956 Predicted N-acetylgluc 99.5 9.2E-11 2E-15 104.4 27.5 311 223-599 47-368 (389)
46 COG3071 HemY Uncharacterized e 99.5 1.8E-10 4E-15 105.9 30.1 287 224-544 97-390 (400)
47 PRK10747 putative protoheme IX 99.5 3E-11 6.6E-16 120.2 27.3 275 293-577 96-389 (398)
48 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.7E-16 120.6 22.5 283 227-549 335-625 (638)
49 KOG1915 Cell cycle control pro 99.5 1.8E-09 4E-14 101.1 35.5 423 121-579 82-537 (677)
50 KOG1173 Anaphase-promoting com 99.5 6.7E-10 1.5E-14 106.5 33.3 261 280-579 243-519 (611)
51 PF13429 TPR_15: Tetratricopep 99.5 2.6E-13 5.6E-18 129.0 10.7 251 286-544 13-277 (280)
52 KOG1155 Anaphase-promoting com 99.4 9.5E-10 2.1E-14 102.8 32.2 251 319-577 234-494 (559)
53 TIGR00540 hemY_coli hemY prote 99.4 6E-11 1.3E-15 118.8 26.1 278 292-576 95-397 (409)
54 KOG0547 Translocase of outer m 99.4 4.4E-10 9.4E-15 105.7 29.5 217 321-544 335-566 (606)
55 TIGR02521 type_IV_pilW type IV 99.4 1.5E-10 3.3E-15 107.4 24.2 198 380-578 30-232 (234)
56 KOG1173 Anaphase-promoting com 99.4 6E-09 1.3E-13 100.2 34.2 470 14-526 15-533 (611)
57 KOG1174 Anaphase-promoting com 99.4 8E-09 1.7E-13 95.3 32.9 374 177-555 94-511 (564)
58 KOG4162 Predicted calmodulin-b 99.4 1.9E-08 4E-13 100.4 36.1 452 124-579 239-784 (799)
59 KOG2047 mRNA splicing factor [ 99.4 1.1E-07 2.5E-12 92.8 40.5 508 50-579 102-688 (835)
60 KOG2376 Signal recognition par 99.3 1.1E-07 2.3E-12 92.3 37.5 461 16-574 13-516 (652)
61 COG2956 Predicted N-acetylgluc 99.3 6.7E-09 1.5E-13 92.8 26.7 268 176-475 65-346 (389)
62 COG3071 HemY Uncharacterized e 99.3 3.5E-09 7.5E-14 97.7 25.6 286 28-345 97-394 (400)
63 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3E-14 107.7 24.0 193 385-577 245-478 (508)
64 PF13041 PPR_2: PPR repeat fam 99.3 1.4E-11 3E-16 81.5 6.8 50 410-459 1-50 (50)
65 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.8E-16 80.5 6.2 49 110-158 1-49 (50)
66 KOG3785 Uncharacterized conser 99.2 8.5E-08 1.8E-12 86.8 30.4 158 414-585 361-521 (557)
67 KOG4162 Predicted calmodulin-b 99.2 3.2E-07 6.9E-12 91.9 35.4 133 414-550 652-789 (799)
68 PRK12370 invasion protein regu 99.2 1E-08 2.3E-13 106.9 26.3 209 360-579 318-536 (553)
69 KOG0985 Vesicle coat protein c 99.2 5.2E-06 1.1E-10 85.6 43.3 531 7-575 505-1246(1666)
70 PRK12370 invasion protein regu 99.2 6.4E-09 1.4E-13 108.5 24.1 178 394-578 317-502 (553)
71 KOG3785 Uncharacterized conser 99.2 5.4E-07 1.2E-11 81.8 32.3 442 90-583 31-495 (557)
72 TIGR02521 type_IV_pilW type IV 99.2 1.3E-08 2.8E-13 94.4 23.6 196 313-545 32-233 (234)
73 COG3063 PilF Tfp pilus assembl 99.2 4.4E-09 9.6E-14 89.6 18.1 163 414-580 37-204 (250)
74 KOG1129 TPR repeat-containing 99.2 2.1E-09 4.5E-14 96.0 16.6 226 316-580 227-460 (478)
75 KOG1156 N-terminal acetyltrans 99.2 3.1E-06 6.8E-11 83.3 39.2 89 418-510 377-466 (700)
76 KOG1174 Anaphase-promoting com 99.1 9E-07 1.9E-11 82.1 32.2 299 143-447 190-504 (564)
77 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-08 3.3E-13 96.4 21.5 190 382-580 65-267 (296)
78 KOG3616 Selective LIM binding 99.1 1.3E-06 2.9E-11 86.7 34.6 336 186-574 621-962 (1636)
79 KOG1840 Kinesin light chain [C 99.1 5.5E-08 1.2E-12 96.6 25.2 239 247-544 200-479 (508)
80 KOG1156 N-terminal acetyltrans 99.1 2.9E-06 6.2E-11 83.6 35.6 101 480-580 366-470 (700)
81 KOG2376 Signal recognition par 99.1 1.5E-06 3.2E-11 84.6 31.8 416 119-577 19-486 (652)
82 KOG4340 Uncharacterized conser 99.0 6.3E-07 1.4E-11 79.4 25.5 382 185-578 15-443 (459)
83 KOG1129 TPR repeat-containing 99.0 1.1E-08 2.3E-13 91.5 14.7 233 280-549 222-463 (478)
84 PF12569 NARP1: NMDA receptor- 99.0 1.4E-06 3.1E-11 87.8 30.6 285 186-509 10-331 (517)
85 PRK11189 lipoprotein NlpI; Pro 99.0 2.2E-07 4.7E-12 88.6 23.7 186 360-553 78-274 (296)
86 PF04733 Coatomer_E: Coatomer 99.0 6.7E-08 1.5E-12 90.5 19.7 155 388-549 109-270 (290)
87 KOG3617 WD40 and TPR repeat-co 99.0 1.6E-05 3.6E-10 80.3 36.3 356 184-580 942-1361(1416)
88 KOG0985 Vesicle coat protein c 99.0 8.9E-05 1.9E-09 76.9 44.4 365 28-404 656-1189(1666)
89 PF12569 NARP1: NMDA receptor- 99.0 1.2E-06 2.6E-11 88.3 28.6 124 450-576 197-332 (517)
90 KOG0548 Molecular co-chaperone 99.0 3.3E-06 7.1E-11 81.5 29.8 216 350-579 227-456 (539)
91 KOG1127 TPR repeat-containing 98.9 1E-05 2.2E-10 83.6 34.5 541 16-577 493-1103(1238)
92 KOG3616 Selective LIM binding 98.9 8E-05 1.7E-09 74.6 40.9 109 20-135 737-847 (1636)
93 KOG1125 TPR repeat-containing 98.9 7.4E-08 1.6E-12 93.3 17.9 217 359-578 298-527 (579)
94 KOG3617 WD40 and TPR repeat-co 98.9 1E-05 2.3E-10 81.7 32.7 244 25-307 738-993 (1416)
95 COG3063 PilF Tfp pilus assembl 98.9 6.7E-07 1.5E-11 76.6 20.9 192 385-578 39-236 (250)
96 KOG4340 Uncharacterized conser 98.9 6.6E-06 1.4E-10 73.2 26.3 343 53-439 13-373 (459)
97 PRK04841 transcriptional regul 98.9 0.00044 9.5E-09 78.2 48.2 366 185-579 346-761 (903)
98 KOG0624 dsRNA-activated protei 98.8 1.1E-05 2.4E-10 73.2 26.8 315 178-551 36-377 (504)
99 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.8E-10 72.8 26.5 189 388-580 162-372 (504)
100 KOG0548 Molecular co-chaperone 98.8 1.2E-05 2.7E-10 77.6 27.9 178 387-573 304-484 (539)
101 PRK10370 formate-dependent nit 98.8 8.3E-07 1.8E-11 78.5 18.3 147 420-580 24-175 (198)
102 PF04733 Coatomer_E: Coatomer 98.8 9.8E-08 2.1E-12 89.4 12.4 175 395-579 80-266 (290)
103 cd05804 StaR_like StaR_like; a 98.7 3.3E-05 7.1E-10 76.7 30.8 198 382-579 115-337 (355)
104 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.4E-11 81.3 18.7 180 380-579 32-233 (235)
105 PRK15359 type III secretion sy 98.7 6.2E-07 1.3E-11 74.9 14.5 94 486-579 27-122 (144)
106 KOG1070 rRNA processing protei 98.7 2.1E-06 4.5E-11 91.5 21.1 201 378-582 1455-1667(1710)
107 PRK15359 type III secretion sy 98.7 7.8E-07 1.7E-11 74.3 13.9 123 433-561 14-138 (144)
108 KOG1127 TPR repeat-containing 98.6 0.00028 6E-09 73.5 33.7 172 65-239 473-658 (1238)
109 PRK15363 pathogenicity island 98.6 9.4E-07 2E-11 72.2 12.7 118 483-623 35-154 (157)
110 cd05804 StaR_like StaR_like; a 98.6 0.0001 2.3E-09 73.1 28.9 218 360-579 57-294 (355)
111 PRK04841 transcriptional regul 98.6 0.00032 7E-09 79.2 35.2 328 188-546 382-762 (903)
112 KOG1128 Uncharacterized conser 98.5 1.8E-05 4E-10 79.2 21.6 183 387-578 430-616 (777)
113 PRK10370 formate-dependent nit 98.5 1.2E-05 2.5E-10 71.3 18.4 157 387-554 22-183 (198)
114 KOG1128 Uncharacterized conser 98.5 4.5E-06 9.8E-11 83.5 17.1 190 376-580 393-584 (777)
115 PRK15179 Vi polysaccharide bio 98.5 1.2E-05 2.7E-10 84.4 21.4 159 411-579 85-246 (694)
116 COG5010 TadD Flp pilus assembl 98.5 8.7E-06 1.9E-10 71.6 16.7 126 452-579 71-198 (257)
117 COG5010 TadD Flp pilus assembl 98.5 1.8E-05 3.9E-10 69.6 18.5 155 416-573 70-226 (257)
118 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4E-12 55.1 4.3 33 276-308 2-34 (34)
119 PLN02789 farnesyltranstransfer 98.5 5.2E-05 1.1E-09 72.2 23.1 183 391-576 81-300 (320)
120 KOG3081 Vesicle coat complex C 98.5 0.00011 2.3E-09 64.9 22.5 176 367-549 94-276 (299)
121 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.1E-12 55.1 4.0 32 478-509 2-33 (34)
122 KOG1914 mRNA cleavage and poly 98.5 0.0016 3.4E-08 63.5 37.0 73 47-120 17-94 (656)
123 KOG3060 Uncharacterized conser 98.4 8.8E-05 1.9E-09 64.8 20.5 166 385-555 56-231 (289)
124 KOG3060 Uncharacterized conser 98.4 3.4E-05 7.3E-10 67.3 17.9 163 414-580 54-222 (289)
125 TIGR02552 LcrH_SycD type III s 98.4 5.8E-06 1.3E-10 68.9 12.4 96 484-579 18-115 (135)
126 PRK15179 Vi polysaccharide bio 98.4 7.2E-05 1.6E-09 78.8 22.9 142 377-522 82-229 (694)
127 KOG1125 TPR repeat-containing 98.4 9.6E-05 2.1E-09 72.3 21.5 215 256-475 295-526 (579)
128 TIGR03302 OM_YfiO outer membra 98.4 2.6E-05 5.6E-10 72.2 17.2 177 348-546 34-234 (235)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1E-05 2.2E-10 78.5 14.6 122 450-576 172-295 (395)
130 COG4783 Putative Zn-dependent 98.4 0.00017 3.7E-09 69.4 22.1 137 421-579 315-455 (484)
131 KOG1914 mRNA cleavage and poly 98.3 0.0037 8.1E-08 61.1 34.1 77 110-221 18-96 (656)
132 KOG2053 Mitochondrial inherita 98.3 0.0064 1.4E-07 63.2 42.2 506 26-576 20-606 (932)
133 PLN02789 farnesyltranstransfer 98.3 0.00014 3E-09 69.4 20.8 190 387-579 43-251 (320)
134 KOG1070 rRNA processing protei 98.3 0.00023 5E-09 76.7 23.8 228 348-576 1459-1698(1710)
135 COG4783 Putative Zn-dependent 98.3 0.00011 2.5E-09 70.5 19.6 127 450-579 310-438 (484)
136 PRK14720 transcript cleavage f 98.3 0.00026 5.6E-09 75.5 23.0 149 382-560 117-268 (906)
137 PRK14720 transcript cleavage f 98.2 0.00058 1.3E-08 72.9 24.9 236 110-423 29-268 (906)
138 TIGR02552 LcrH_SycD type III s 98.2 5.2E-05 1.1E-09 63.1 13.8 114 434-551 5-121 (135)
139 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.5E-09 61.6 14.7 84 490-574 55-143 (145)
140 TIGR00756 PPR pentatricopeptid 98.1 4.8E-06 1E-10 50.1 4.6 35 113-147 1-35 (35)
141 PF13812 PPR_3: Pentatricopept 98.1 5.3E-06 1.1E-10 49.5 4.4 34 112-145 1-34 (34)
142 PF13414 TPR_11: TPR repeat; P 98.1 1.3E-05 2.9E-10 57.3 6.9 65 514-578 2-67 (69)
143 TIGR00756 PPR pentatricopeptid 98.1 7E-06 1.5E-10 49.4 4.5 34 413-446 1-34 (35)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00016 3.4E-09 70.4 15.8 125 382-510 170-295 (395)
145 cd00189 TPR Tetratricopeptide 98.1 5.2E-05 1.1E-09 58.4 10.5 94 486-579 3-98 (100)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00046 9.9E-09 58.0 16.0 126 414-542 14-145 (145)
147 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 48.1 4.4 33 413-445 2-34 (34)
148 KOG3081 Vesicle coat complex C 98.0 0.0015 3.2E-08 57.9 18.9 150 419-578 115-271 (299)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0001 2.2E-09 59.6 11.4 94 486-579 5-106 (119)
150 PF12895 Apc3: Anaphase-promot 98.0 7.6E-06 1.6E-10 61.2 3.9 77 497-574 3-83 (84)
151 PLN03088 SGT1, suppressor of 98.0 0.00019 4.2E-09 70.2 14.7 89 491-579 10-100 (356)
152 PF13432 TPR_16: Tetratricopep 98.0 2.8E-05 6.1E-10 54.8 6.5 59 521-579 3-61 (65)
153 COG4235 Cytochrome c biogenesi 98.0 0.00017 3.7E-09 65.4 12.8 107 479-585 152-263 (287)
154 KOG0553 TPR repeat-containing 97.9 0.00011 2.4E-09 66.2 11.0 108 457-566 91-200 (304)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00034 7.4E-09 56.5 12.6 105 450-554 5-115 (119)
156 KOG0553 TPR repeat-containing 97.9 6.4E-05 1.4E-09 67.7 8.3 89 491-579 89-179 (304)
157 PRK02603 photosystem I assembl 97.8 0.00038 8.3E-09 60.5 11.9 94 485-578 37-149 (172)
158 PF07079 DUF1347: Protein of u 97.8 0.043 9.3E-07 52.8 29.5 59 422-488 472-530 (549)
159 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 44.1 3.7 31 113-143 1-31 (31)
160 COG4700 Uncharacterized protei 97.7 0.00076 1.6E-08 56.1 11.5 150 424-577 68-221 (251)
161 CHL00033 ycf3 photosystem I as 97.7 0.00046 9.9E-09 59.8 11.2 93 483-575 35-139 (168)
162 PLN03088 SGT1, suppressor of 97.7 0.00082 1.8E-08 65.8 14.1 104 456-561 11-116 (356)
163 PRK15331 chaperone protein Sic 97.7 0.00085 1.8E-08 55.5 11.7 88 490-577 44-133 (165)
164 PF14559 TPR_19: Tetratricopep 97.7 7.1E-05 1.5E-09 53.3 5.0 54 526-579 2-55 (68)
165 PRK02603 photosystem I assembl 97.7 0.0017 3.8E-08 56.3 14.2 131 411-564 34-166 (172)
166 PF13371 TPR_9: Tetratricopept 97.7 0.00018 3.9E-09 52.0 6.8 59 522-580 2-60 (73)
167 PF05843 Suf: Suppressor of fo 97.7 0.0019 4.1E-08 60.9 15.2 134 413-549 2-141 (280)
168 PF01535 PPR: PPR repeat; Int 97.7 6.9E-05 1.5E-09 43.4 3.6 31 413-443 1-31 (31)
169 cd00189 TPR Tetratricopeptide 97.6 0.00061 1.3E-08 52.2 10.2 89 456-546 9-99 (100)
170 PF13432 TPR_16: Tetratricopep 97.6 0.00014 3E-09 51.2 5.7 61 489-549 3-65 (65)
171 PRK10153 DNA-binding transcrip 97.6 0.0027 5.9E-08 65.0 16.9 64 515-579 420-483 (517)
172 PF12895 Apc3: Anaphase-promot 97.5 0.00038 8.2E-09 52.0 6.9 80 425-508 2-83 (84)
173 COG4700 Uncharacterized protei 97.5 0.022 4.7E-07 47.7 17.1 131 410-540 87-218 (251)
174 KOG2041 WD40 repeat protein [G 97.5 0.092 2E-06 53.3 24.4 31 47-77 689-719 (1189)
175 KOG0550 Molecular chaperone (D 97.5 0.011 2.3E-07 56.0 16.7 155 420-580 177-352 (486)
176 PF14559 TPR_19: Tetratricopep 97.5 0.00026 5.7E-09 50.3 5.0 61 495-555 3-65 (68)
177 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.6E-09 43.1 2.6 34 537-570 1-34 (34)
178 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.8E-06 49.1 29.5 102 388-506 184-285 (319)
179 PF13414 TPR_11: TPR repeat; P 97.4 0.00049 1.1E-08 49.1 5.8 65 482-546 2-69 (69)
180 PF14938 SNAP: Soluble NSF att 97.4 0.044 9.6E-07 52.0 20.7 97 414-510 157-264 (282)
181 PRK10153 DNA-binding transcrip 97.4 0.0093 2E-07 61.2 17.1 141 409-551 334-489 (517)
182 PF10037 MRP-S27: Mitochondria 97.4 0.0023 5E-08 62.7 12.1 119 176-294 62-186 (429)
183 PF05843 Suf: Suppressor of fo 97.4 0.0025 5.4E-08 60.1 12.1 129 448-578 2-136 (280)
184 CHL00033 ycf3 photosystem I as 97.4 0.0049 1.1E-07 53.3 13.0 63 413-475 36-100 (168)
185 PF08579 RPM2: Mitochondrial r 97.4 0.0036 7.8E-08 47.7 10.1 79 416-495 29-116 (120)
186 PF10037 MRP-S27: Mitochondria 97.3 0.003 6.5E-08 62.0 12.4 78 415-493 106-183 (429)
187 PF12688 TPR_5: Tetratrico pep 97.3 0.0095 2.1E-07 47.3 12.6 93 418-510 7-102 (120)
188 PF12688 TPR_5: Tetratrico pep 97.2 0.0039 8.4E-08 49.5 9.8 87 490-576 8-102 (120)
189 PF08579 RPM2: Mitochondrial r 97.2 0.0056 1.2E-07 46.7 10.0 76 116-192 29-116 (120)
190 COG3898 Uncharacterized membra 97.2 0.2 4.3E-06 47.5 25.7 244 323-579 131-393 (531)
191 PRK10803 tol-pal system protei 97.2 0.0034 7.4E-08 58.0 10.7 86 494-579 154-247 (263)
192 PRK10866 outer membrane biogen 97.2 0.082 1.8E-06 48.6 19.2 172 388-576 39-239 (243)
193 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.3E-08 42.1 4.7 42 516-557 2-43 (44)
194 PF13424 TPR_12: Tetratricopep 97.1 0.0011 2.3E-08 48.7 5.5 62 516-577 6-74 (78)
195 PF07079 DUF1347: Protein of u 97.1 0.29 6.4E-06 47.4 36.0 190 382-576 299-522 (549)
196 PF14938 SNAP: Soluble NSF att 97.1 0.026 5.6E-07 53.5 15.9 160 385-546 39-227 (282)
197 PRK10866 outer membrane biogen 97.1 0.12 2.6E-06 47.5 19.6 53 289-341 40-98 (243)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0029 6.3E-08 61.4 9.3 65 514-578 74-141 (453)
199 PF04840 Vps16_C: Vps16, C-ter 97.1 0.3 6.6E-06 46.7 28.8 51 284-334 180-230 (319)
200 KOG2053 Mitochondrial inherita 97.1 0.56 1.2E-05 49.6 42.8 100 92-195 20-125 (932)
201 PRK15363 pathogenicity island 97.0 0.027 5.8E-07 46.6 13.1 91 385-476 39-132 (157)
202 PF06239 ECSIT: Evolutionarily 97.0 0.0095 2.1E-07 51.6 10.6 97 401-498 34-153 (228)
203 PF09205 DUF1955: Domain of un 97.0 0.12 2.6E-06 40.7 15.1 141 422-581 12-152 (161)
204 KOG1538 Uncharacterized conser 97.0 0.21 4.6E-06 50.4 20.6 57 385-441 777-846 (1081)
205 KOG0543 FKBP-type peptidyl-pro 97.0 0.0086 1.9E-07 56.9 10.8 64 516-579 258-321 (397)
206 PF13371 TPR_9: Tetratricopept 96.9 0.004 8.6E-08 44.9 6.9 64 491-554 3-68 (73)
207 PRK10803 tol-pal system protei 96.9 0.018 3.9E-07 53.3 12.5 103 449-551 145-253 (263)
208 KOG1538 Uncharacterized conser 96.9 0.5 1.1E-05 47.9 22.6 86 449-544 749-846 (1081)
209 KOG2796 Uncharacterized conser 96.9 0.29 6.3E-06 43.7 18.7 132 414-546 179-317 (366)
210 KOG0543 FKBP-type peptidyl-pro 96.8 0.028 6.1E-07 53.5 12.9 138 419-578 215-355 (397)
211 KOG2796 Uncharacterized conser 96.7 0.089 1.9E-06 46.9 14.4 132 450-582 180-319 (366)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.67 1.4E-05 45.0 30.0 145 310-457 395-545 (660)
213 PF13281 DUF4071: Domain of un 96.7 0.24 5.2E-06 47.9 18.2 160 386-548 146-338 (374)
214 COG4235 Cytochrome c biogenesi 96.6 0.08 1.7E-06 48.6 14.0 104 444-549 153-261 (287)
215 PF03704 BTAD: Bacterial trans 96.6 0.013 2.9E-07 49.2 8.7 62 516-577 63-124 (146)
216 KOG2041 WD40 repeat protein [G 96.6 1.1 2.4E-05 46.0 32.0 55 278-337 849-903 (1189)
217 KOG2280 Vacuolar assembly/sort 96.4 1.4 3.1E-05 45.8 25.3 113 445-573 682-794 (829)
218 PF06239 ECSIT: Evolutionarily 96.4 0.027 5.8E-07 48.9 9.3 31 126-156 66-96 (228)
219 COG3898 Uncharacterized membra 96.4 0.88 1.9E-05 43.4 25.2 267 94-375 97-392 (531)
220 KOG1130 Predicted G-alpha GTPa 96.4 0.046 1E-06 51.8 11.3 129 448-576 196-342 (639)
221 PF13525 YfiO: Outer membrane 96.4 0.17 3.7E-06 45.2 14.7 163 389-570 13-199 (203)
222 PF12921 ATP13: Mitochondrial 96.3 0.065 1.4E-06 43.1 10.3 51 442-492 47-97 (126)
223 KOG2280 Vacuolar assembly/sort 96.3 1.7 3.8E-05 45.1 29.4 58 280-337 683-740 (829)
224 KOG1130 Predicted G-alpha GTPa 96.3 0.17 3.7E-06 48.2 14.1 130 415-544 198-344 (639)
225 KOG4555 TPR repeat-containing 96.3 0.036 7.8E-07 43.4 8.1 90 491-580 51-146 (175)
226 PF13424 TPR_12: Tetratricopep 96.1 0.0075 1.6E-07 44.1 4.0 29 516-544 47-75 (78)
227 KOG0550 Molecular chaperone (D 96.1 1.4 3.1E-05 42.4 20.2 160 345-510 166-348 (486)
228 PF13525 YfiO: Outer membrane 96.0 0.35 7.5E-06 43.2 14.6 143 417-579 10-171 (203)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.055 1.2E-06 52.9 9.8 62 483-544 75-141 (453)
230 PF13281 DUF4071: Domain of un 95.9 0.82 1.8E-05 44.3 17.2 165 414-579 143-335 (374)
231 PF10300 DUF3808: Protein of u 95.9 0.65 1.4E-05 47.5 17.7 161 414-577 190-375 (468)
232 KOG1258 mRNA processing protei 95.9 2.4 5.2E-05 43.1 32.0 181 380-563 296-489 (577)
233 PF03704 BTAD: Bacterial trans 95.8 0.12 2.5E-06 43.5 10.3 72 414-486 64-139 (146)
234 PF13512 TPR_18: Tetratricopep 95.8 0.3 6.6E-06 39.7 11.7 89 491-579 18-129 (142)
235 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.2 4.8E-05 41.6 32.8 134 412-548 397-535 (660)
236 PRK11906 transcriptional regul 95.6 0.18 3.9E-06 49.6 11.7 62 514-575 337-398 (458)
237 KOG1920 IkappaB kinase complex 95.6 3.1 6.6E-05 45.9 21.3 77 387-471 971-1050(1265)
238 COG1729 Uncharacterized protei 95.5 0.11 2.4E-06 47.0 9.2 58 521-578 184-244 (262)
239 PF04184 ST7: ST7 protein; In 95.4 2.9 6.4E-05 41.6 18.8 140 324-473 180-321 (539)
240 COG3118 Thioredoxin domain-con 95.2 2.2 4.8E-05 39.3 16.5 32 544-575 231-262 (304)
241 smart00299 CLH Clathrin heavy 95.2 1.5 3.2E-05 36.3 15.3 126 415-560 10-136 (140)
242 COG3118 Thioredoxin domain-con 95.2 1.6 3.4E-05 40.3 15.4 172 397-570 119-293 (304)
243 KOG2610 Uncharacterized conser 95.2 0.27 5.8E-06 45.6 10.6 159 423-584 114-282 (491)
244 PRK11906 transcriptional regul 95.2 1.4 3.1E-05 43.6 16.2 143 428-573 274-431 (458)
245 PF07719 TPR_2: Tetratricopept 95.2 0.063 1.4E-06 31.4 4.7 33 516-548 2-34 (34)
246 KOG1585 Protein required for f 95.2 1.9 4E-05 38.5 15.1 159 397-572 74-250 (308)
247 COG0457 NrfG FOG: TPR repeat [ 95.1 2.6 5.7E-05 38.3 27.0 198 381-580 59-267 (291)
248 PRK15331 chaperone protein Sic 95.0 0.95 2.1E-05 37.9 12.5 86 456-543 46-133 (165)
249 PF02259 FAT: FAT domain; Int 95.0 2.9 6.4E-05 41.2 19.1 150 410-562 144-305 (352)
250 PF00515 TPR_1: Tetratricopept 95.0 0.053 1.1E-06 31.8 4.0 32 516-547 2-33 (34)
251 PF04053 Coatomer_WDAD: Coatom 95.0 0.64 1.4E-05 46.8 13.9 76 493-579 328-403 (443)
252 PF04184 ST7: ST7 protein; In 94.7 1.9 4E-05 42.9 15.4 150 419-580 175-326 (539)
253 KOG3941 Intermediate in Toll s 94.6 0.37 7.9E-06 43.6 9.8 110 400-510 53-186 (406)
254 KOG4555 TPR repeat-containing 94.6 0.35 7.7E-06 38.1 8.4 25 523-547 123-147 (175)
255 PF12921 ATP13: Mitochondrial 94.6 0.4 8.6E-06 38.6 9.2 93 446-556 1-95 (126)
256 KOG1941 Acetylcholine receptor 94.6 1.3 2.9E-05 41.7 13.5 161 414-574 85-271 (518)
257 PF04053 Coatomer_WDAD: Coatom 94.4 0.99 2.2E-05 45.5 13.6 156 90-307 270-428 (443)
258 COG1729 Uncharacterized protei 94.4 1 2.2E-05 41.1 12.2 92 460-551 154-251 (262)
259 KOG1920 IkappaB kinase complex 94.3 11 0.00024 41.9 21.4 113 414-542 941-1053(1265)
260 KOG2610 Uncharacterized conser 94.2 1.4 3E-05 41.1 12.8 177 392-572 114-309 (491)
261 COG4105 ComL DNA uptake lipopr 94.1 4.5 9.8E-05 36.7 19.1 170 392-579 45-234 (254)
262 smart00299 CLH Clathrin heavy 94.0 3 6.5E-05 34.5 15.1 84 251-338 12-95 (140)
263 KOG3364 Membrane protein invol 94.0 0.86 1.9E-05 36.3 9.4 67 513-579 30-101 (149)
264 PF13176 TPR_7: Tetratricopept 93.7 0.15 3.2E-06 30.4 4.0 26 551-576 1-26 (36)
265 COG4105 ComL DNA uptake lipopr 93.7 5.3 0.00011 36.2 21.4 136 419-578 41-196 (254)
266 KOG2114 Vacuolar assembly/sort 93.6 8.9 0.00019 40.8 18.4 54 285-338 709-762 (933)
267 KOG4234 TPR repeat-containing 93.6 0.31 6.7E-06 41.7 6.9 58 522-579 141-198 (271)
268 PF13512 TPR_18: Tetratricopep 93.6 2.4 5.1E-05 34.7 11.7 115 419-550 17-134 (142)
269 COG3629 DnrI DNA-binding trans 93.5 0.5 1.1E-05 43.7 8.7 62 516-577 154-215 (280)
270 COG0457 NrfG FOG: TPR repeat [ 93.3 6 0.00013 35.8 25.3 164 380-547 94-268 (291)
271 PF00637 Clathrin: Region in C 92.7 0.25 5.4E-06 41.2 5.4 85 20-107 12-96 (143)
272 PRK11619 lytic murein transgly 92.7 16 0.00035 39.1 39.7 94 490-583 414-510 (644)
273 PF13181 TPR_8: Tetratricopept 92.7 0.25 5.3E-06 28.8 3.9 30 517-546 3-32 (34)
274 KOG2066 Vacuolar assembly/sort 92.7 16 0.00034 38.8 24.5 106 118-258 362-467 (846)
275 PF13176 TPR_7: Tetratricopept 92.6 0.23 5E-06 29.5 3.7 28 517-544 1-28 (36)
276 PF13428 TPR_14: Tetratricopep 92.5 0.42 9.2E-06 30.0 5.0 29 113-141 2-30 (44)
277 PF14432 DYW_deaminase: DYW fa 92.4 0.14 3.1E-06 40.5 3.3 38 585-634 2-39 (116)
278 PF14853 Fis1_TPR_C: Fis1 C-te 92.4 1.2 2.5E-05 29.3 6.9 51 551-627 3-53 (53)
279 KOG2114 Vacuolar assembly/sort 92.2 19 0.0004 38.6 23.1 53 386-438 710-762 (933)
280 KOG3941 Intermediate in Toll s 92.1 1.3 2.7E-05 40.3 9.0 92 102-194 55-172 (406)
281 PF09205 DUF1955: Domain of un 92.1 5.3 0.00011 32.0 12.9 60 416-476 90-149 (161)
282 PF10300 DUF3808: Protein of u 92.0 16 0.00036 37.5 21.1 112 259-373 246-374 (468)
283 PF09613 HrpB1_HrpK: Bacterial 91.8 1.5 3.2E-05 36.6 8.6 71 495-565 22-94 (160)
284 PF13170 DUF4003: Protein of u 91.8 7.1 0.00015 37.1 14.3 94 397-493 119-227 (297)
285 TIGR02561 HrpB1_HrpK type III 91.6 1.3 2.7E-05 36.3 7.7 52 528-579 23-74 (153)
286 PF07719 TPR_2: Tetratricopept 91.3 0.46 1E-05 27.6 4.0 30 550-579 2-31 (34)
287 KOG4234 TPR repeat-containing 91.3 5.5 0.00012 34.4 11.4 89 491-579 142-234 (271)
288 PF07035 Mic1: Colon cancer-as 91.2 6.6 0.00014 33.3 11.9 128 8-141 22-149 (167)
289 PRK09687 putative lyase; Provi 91.2 14 0.00029 35.0 26.9 23 417-440 240-262 (280)
290 PF10602 RPN7: 26S proteasome 91.1 6.4 0.00014 34.1 12.3 95 414-510 38-140 (177)
291 KOG4648 Uncharacterized conser 91.1 0.65 1.4E-05 43.3 6.3 112 454-572 104-218 (536)
292 PRK15180 Vi polysaccharide bio 91.1 4.5 9.7E-05 39.9 12.1 86 494-579 334-421 (831)
293 PF02259 FAT: FAT domain; Int 91.1 14 0.00031 36.3 16.8 66 514-579 145-214 (352)
294 COG3947 Response regulator con 90.8 14 0.00029 34.3 16.4 61 517-577 281-341 (361)
295 PF00515 TPR_1: Tetratricopept 90.5 0.61 1.3E-05 27.1 4.0 30 550-579 2-31 (34)
296 PRK09687 putative lyase; Provi 90.5 16 0.00034 34.5 26.5 26 520-546 240-265 (280)
297 COG4649 Uncharacterized protei 90.3 6.4 0.00014 33.2 10.7 48 192-239 70-122 (221)
298 KOG4648 Uncharacterized conser 90.2 1.6 3.5E-05 40.8 8.0 92 419-514 104-197 (536)
299 PF09613 HrpB1_HrpK: Bacterial 90.2 10 0.00022 31.8 13.0 109 457-570 20-130 (160)
300 PRK11619 lytic murein transgly 90.2 30 0.00065 37.2 31.0 49 289-338 107-155 (644)
301 PF08631 SPO22: Meiosis protei 90.1 17 0.00037 34.3 24.8 17 321-337 255-271 (278)
302 PF13374 TPR_10: Tetratricopep 89.8 0.79 1.7E-05 28.1 4.3 27 517-543 4-30 (42)
303 KOG1585 Protein required for f 89.7 6.2 0.00013 35.4 10.7 167 384-576 34-217 (308)
304 COG2909 MalT ATP-dependent tra 89.5 35 0.00075 37.1 23.8 187 392-582 426-651 (894)
305 COG1747 Uncharacterized N-term 89.4 26 0.00055 35.3 20.5 172 380-559 65-249 (711)
306 PRK10941 hypothetical protein; 89.3 4 8.6E-05 38.0 10.1 63 517-579 183-245 (269)
307 KOG1464 COP9 signalosome, subu 89.1 14 0.00029 33.7 12.6 177 394-570 40-252 (440)
308 PF07035 Mic1: Colon cancer-as 88.8 14 0.0003 31.5 15.7 36 268-303 16-51 (167)
309 PF13374 TPR_10: Tetratricopep 88.7 0.98 2.1E-05 27.7 4.1 29 550-578 3-31 (42)
310 PF13431 TPR_17: Tetratricopep 88.6 0.68 1.5E-05 27.1 3.0 31 168-200 3-33 (34)
311 PF10602 RPN7: 26S proteasome 88.6 5.8 0.00012 34.4 10.0 88 485-574 38-138 (177)
312 PF11207 DUF2989: Protein of u 88.5 3.4 7.4E-05 36.0 8.3 75 494-570 118-199 (203)
313 COG3629 DnrI DNA-binding trans 88.4 5.7 0.00012 37.0 10.3 77 414-491 155-235 (280)
314 COG4785 NlpI Lipoprotein NlpI, 88.4 17 0.00037 32.1 15.5 161 412-580 99-268 (297)
315 PF13174 TPR_6: Tetratricopept 88.3 1.1 2.3E-05 25.7 3.8 25 553-577 4-28 (33)
316 KOG1941 Acetylcholine receptor 88.1 5.4 0.00012 37.9 9.9 165 413-577 44-234 (518)
317 KOG0276 Vesicle coat complex C 88.1 14 0.0003 37.9 13.2 150 392-574 597-746 (794)
318 COG2976 Uncharacterized protei 88.0 17 0.00037 31.5 14.6 126 414-546 56-190 (207)
319 PF07721 TPR_4: Tetratricopept 88.0 0.83 1.8E-05 24.7 2.9 24 550-573 2-25 (26)
320 KOG4570 Uncharacterized conser 87.8 2.4 5.3E-05 39.2 7.3 99 376-476 59-164 (418)
321 KOG2066 Vacuolar assembly/sort 87.5 43 0.00094 35.7 23.9 31 382-412 506-536 (846)
322 PF13174 TPR_6: Tetratricopept 87.3 0.92 2E-05 26.0 3.1 31 518-548 3-33 (33)
323 TIGR02561 HrpB1_HrpK type III 86.7 6.9 0.00015 32.2 8.6 76 447-527 7-89 (153)
324 KOG1258 mRNA processing protei 86.4 43 0.00093 34.6 28.4 127 14-141 44-180 (577)
325 PF13181 TPR_8: Tetratricopept 86.4 1.9 4.1E-05 24.9 4.2 29 550-578 2-30 (34)
326 KOG0376 Serine-threonine phosp 86.3 1.4 3E-05 43.5 5.3 87 491-577 12-100 (476)
327 KOG1586 Protein required for f 85.6 26 0.00057 31.4 15.7 57 523-579 162-225 (288)
328 COG4649 Uncharacterized protei 84.9 23 0.0005 30.0 15.7 129 414-544 61-196 (221)
329 PF08631 SPO22: Meiosis protei 84.7 36 0.00079 32.2 24.7 18 525-542 256-273 (278)
330 KOG4642 Chaperone-dependent E3 84.5 2.9 6.4E-05 37.2 5.9 85 457-544 20-107 (284)
331 PF13170 DUF4003: Protein of u 84.0 40 0.00087 32.1 18.1 24 129-152 79-102 (297)
332 KOG0276 Vesicle coat complex C 83.9 12 0.00026 38.3 10.4 101 190-307 647-747 (794)
333 PF02284 COX5A: Cytochrome c o 83.3 5.9 0.00013 30.0 6.2 60 430-491 28-87 (108)
334 KOG1550 Extracellular protein 83.2 62 0.0013 34.3 16.3 151 424-580 261-428 (552)
335 TIGR02508 type_III_yscG type I 83.0 18 0.00039 27.4 8.7 86 262-351 21-106 (115)
336 smart00028 TPR Tetratricopepti 82.7 2.5 5.5E-05 23.3 3.7 25 552-576 4-28 (34)
337 PF14853 Fis1_TPR_C: Fis1 C-te 82.3 4.3 9.4E-05 26.7 4.7 35 519-553 5-39 (53)
338 PF06552 TOM20_plant: Plant sp 82.1 5 0.00011 34.2 6.2 33 531-563 51-83 (186)
339 PF00637 Clathrin: Region in C 81.6 1.1 2.4E-05 37.3 2.3 85 252-339 13-97 (143)
340 COG4455 ImpE Protein of avirul 81.6 6.3 0.00014 34.6 6.7 72 486-557 4-80 (273)
341 PF04097 Nic96: Nup93/Nic96; 81.5 82 0.0018 33.9 22.0 47 111-158 110-156 (613)
342 PF04910 Tcf25: Transcriptiona 81.2 59 0.0013 32.1 14.8 64 514-577 99-167 (360)
343 PRK12798 chemotaxis protein; R 80.8 62 0.0013 32.0 21.6 150 394-545 125-287 (421)
344 KOG4507 Uncharacterized conser 80.5 5.1 0.00011 40.6 6.6 99 459-560 619-721 (886)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 14 0.00031 27.7 7.2 45 511-555 38-82 (103)
346 PF13929 mRNA_stabil: mRNA sta 80.1 29 0.00062 32.4 10.8 64 513-580 200-265 (292)
347 KOG1308 Hsp70-interacting prot 79.9 1.1 2.5E-05 41.9 1.9 90 495-584 126-217 (377)
348 COG4785 NlpI Lipoprotein NlpI, 79.6 44 0.00096 29.6 16.6 163 378-549 96-271 (297)
349 PRK13800 putative oxidoreducta 79.5 1.2E+02 0.0026 34.5 25.8 60 279-339 787-847 (897)
350 KOG2034 Vacuolar sorting prote 79.2 1E+02 0.0022 33.6 21.4 172 56-237 364-556 (911)
351 KOG1464 COP9 signalosome, subu 78.9 52 0.0011 30.1 17.2 159 386-551 150-339 (440)
352 TIGR03504 FimV_Cterm FimV C-te 78.9 4.4 9.6E-05 25.4 3.7 27 553-579 3-29 (44)
353 KOG4279 Serine/threonine prote 78.9 92 0.002 33.3 14.8 187 314-554 203-405 (1226)
354 cd00923 Cyt_c_Oxidase_Va Cytoc 78.7 26 0.00056 26.4 8.7 62 428-491 23-84 (103)
355 PF04190 DUF410: Protein of un 78.3 59 0.0013 30.3 16.9 158 192-374 2-169 (260)
356 KOG0545 Aryl-hydrocarbon recep 77.9 48 0.001 30.0 10.9 59 521-579 236-294 (329)
357 KOG0890 Protein kinase of the 77.8 1.9E+02 0.004 35.9 30.3 64 515-580 1670-1733(2382)
358 PF09986 DUF2225: Uncharacteri 77.8 15 0.00032 33.0 8.3 63 517-579 120-195 (214)
359 PF14561 TPR_20: Tetratricopep 77.7 10 0.00022 28.4 6.1 45 535-579 8-52 (90)
360 PF02284 COX5A: Cytochrome c o 77.3 30 0.00064 26.4 8.9 46 511-556 41-86 (108)
361 KOG0890 Protein kinase of the 76.4 2E+02 0.0044 35.6 26.5 128 182-318 1422-1552(2382)
362 COG4455 ImpE Protein of avirul 76.4 11 0.00025 33.1 6.7 74 449-524 3-81 (273)
363 PRK13800 putative oxidoreducta 76.2 1.5E+02 0.0032 33.8 27.6 18 244-261 633-650 (897)
364 smart00028 TPR Tetratricopepti 75.5 6 0.00013 21.6 3.7 31 516-546 2-32 (34)
365 KOG2063 Vacuolar assembly/sort 75.1 1.4E+02 0.0031 33.1 16.6 57 84-140 310-374 (877)
366 PF06552 TOM20_plant: Plant sp 75.0 13 0.00027 31.9 6.5 66 511-583 64-141 (186)
367 KOG1498 26S proteasome regulat 75.0 87 0.0019 30.6 14.8 189 394-583 25-246 (439)
368 PF11207 DUF2989: Protein of u 74.2 35 0.00075 30.0 9.1 73 228-301 123-198 (203)
369 KOG4570 Uncharacterized conser 74.1 25 0.00055 32.9 8.6 100 176-276 60-165 (418)
370 PRK15180 Vi polysaccharide bio 73.4 1.1E+02 0.0023 30.9 29.4 117 159-278 304-423 (831)
371 smart00386 HAT HAT (Half-A-TPR 73.3 9.4 0.0002 21.4 4.1 30 529-558 1-30 (33)
372 PF13762 MNE1: Mitochondrial s 73.2 48 0.001 27.4 9.3 50 311-360 78-128 (145)
373 PF04097 Nic96: Nup93/Nic96; 73.1 1.4E+02 0.003 32.1 19.7 48 211-259 111-158 (613)
374 KOG2063 Vacuolar assembly/sort 72.6 1.4E+02 0.003 33.2 15.0 132 114-258 506-638 (877)
375 PF04190 DUF410: Protein of un 72.5 84 0.0018 29.3 17.9 156 93-275 2-170 (260)
376 PF09670 Cas_Cas02710: CRISPR- 72.3 84 0.0018 31.3 12.8 54 421-475 140-197 (379)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 71.9 36 0.00079 27.5 8.4 42 533-574 81-124 (126)
378 KOG0686 COP9 signalosome, subu 70.8 1.1E+02 0.0024 30.1 14.5 89 383-473 152-255 (466)
379 TIGR02508 type_III_yscG type I 69.7 47 0.001 25.3 9.4 60 389-451 47-106 (115)
380 PF10579 Rapsyn_N: Rapsyn N-te 69.6 15 0.00033 26.4 4.9 46 424-469 18-65 (80)
381 PRK10941 hypothetical protein; 67.7 29 0.00063 32.4 7.9 65 487-551 185-251 (269)
382 TIGR02270 conserved hypothetic 67.6 1.4E+02 0.0031 30.0 23.1 121 179-309 160-280 (410)
383 PF12862 Apc5: Anaphase-promot 67.3 32 0.00069 26.0 6.9 52 526-577 9-69 (94)
384 KOG3824 Huntingtin interacting 67.3 26 0.00056 32.7 7.2 48 526-573 127-174 (472)
385 TIGR03504 FimV_Cterm FimV C-te 66.9 15 0.00033 23.0 4.0 24 418-441 5-28 (44)
386 COG0790 FOG: TPR repeat, SEL1 66.6 1.2E+02 0.0026 28.8 18.0 115 462-580 128-268 (292)
387 KOG3364 Membrane protein invol 66.3 70 0.0015 26.0 8.5 72 480-551 29-107 (149)
388 PF10345 Cohesin_load: Cohesin 65.8 2E+02 0.0043 31.0 35.2 49 528-576 547-604 (608)
389 KOG1586 Protein required for f 65.3 1.1E+02 0.0023 27.8 16.4 104 453-556 119-238 (288)
390 PF04910 Tcf25: Transcriptiona 64.9 1.5E+02 0.0032 29.3 13.3 56 419-474 110-166 (360)
391 cd08819 CARD_MDA5_2 Caspase ac 64.8 38 0.00082 25.0 6.2 66 34-101 21-86 (88)
392 PRK13342 recombination factor 64.1 1.7E+02 0.0036 29.7 13.3 40 114-153 229-271 (413)
393 KOG0551 Hsp90 co-chaperone CNS 64.1 36 0.00077 32.3 7.5 88 489-576 87-180 (390)
394 PF09477 Type_III_YscG: Bacter 64.1 66 0.0014 24.9 9.1 79 261-342 21-99 (116)
395 PF11846 DUF3366: Domain of un 63.8 27 0.0006 30.7 6.9 36 511-546 140-175 (193)
396 KOG0128 RNA-binding protein SA 62.9 2.3E+02 0.0051 30.9 24.3 94 14-108 112-217 (881)
397 smart00777 Mad3_BUB1_I Mad3/BU 62.2 82 0.0018 25.4 8.6 71 500-573 50-123 (125)
398 KOG2422 Uncharacterized conser 62.1 1.9E+02 0.0042 30.0 12.5 47 425-472 251-309 (665)
399 KOG4567 GTPase-activating prot 61.6 1.3E+02 0.0027 28.5 10.4 85 432-523 263-357 (370)
400 PHA02875 ankyrin repeat protei 61.5 1.2E+02 0.0027 30.6 12.1 208 220-448 8-231 (413)
401 PF09477 Type_III_YscG: Bacter 61.3 75 0.0016 24.6 10.3 79 27-108 18-96 (116)
402 COG5159 RPN6 26S proteasome re 61.2 1.4E+02 0.0031 27.8 20.4 32 217-248 9-40 (421)
403 COG2976 Uncharacterized protei 60.8 1.2E+02 0.0025 26.7 15.4 56 387-442 132-189 (207)
404 PF13762 MNE1: Mitochondrial s 60.7 97 0.0021 25.7 10.1 48 448-496 80-128 (145)
405 PF11846 DUF3366: Domain of un 60.2 40 0.00086 29.7 7.2 33 478-510 139-171 (193)
406 cd08819 CARD_MDA5_2 Caspase ac 60.1 68 0.0015 23.7 6.9 65 266-332 22-86 (88)
407 PF10366 Vps39_1: Vacuolar sor 59.3 69 0.0015 25.0 7.5 41 530-578 28-68 (108)
408 PF11848 DUF3368: Domain of un 59.0 25 0.00054 22.5 4.1 39 21-59 8-46 (48)
409 KOG2396 HAT (Half-A-TPR) repea 58.3 2.2E+02 0.0048 29.1 31.7 66 12-78 102-168 (568)
410 PF07163 Pex26: Pex26 protein; 58.0 1.3E+02 0.0027 28.1 9.7 90 418-510 89-185 (309)
411 KOG4077 Cytochrome c oxidase, 58.0 69 0.0015 25.6 6.9 59 430-490 67-125 (149)
412 KOG0292 Vesicle coat complex C 57.4 18 0.00039 38.9 4.9 45 494-541 654-698 (1202)
413 PF13934 ELYS: Nuclear pore co 57.1 1.5E+02 0.0033 26.9 11.0 22 489-510 114-135 (226)
414 KOG2396 HAT (Half-A-TPR) repea 56.2 2.4E+02 0.0052 28.8 33.9 91 487-577 464-558 (568)
415 KOG4814 Uncharacterized conser 55.5 1.8E+02 0.004 30.6 11.3 87 493-579 364-458 (872)
416 PF12862 Apc5: Anaphase-promot 55.4 71 0.0015 24.0 6.9 24 521-544 47-70 (94)
417 PF11768 DUF3312: Protein of u 54.9 2E+02 0.0044 29.7 11.6 56 385-440 412-472 (545)
418 PF14863 Alkyl_sulf_dimr: Alky 54.7 85 0.0019 25.9 7.6 63 500-565 58-120 (141)
419 COG4976 Predicted methyltransf 54.6 28 0.00061 31.1 4.9 57 525-581 5-61 (287)
420 PRK10564 maltose regulon perip 54.5 24 0.00051 33.1 4.8 43 110-152 254-297 (303)
421 KOG4642 Chaperone-dependent E3 54.2 1.7E+02 0.0037 26.6 10.1 115 421-540 19-142 (284)
422 KOG3824 Huntingtin interacting 54.2 49 0.0011 31.0 6.6 53 458-513 127-181 (472)
423 KOG3807 Predicted membrane pro 53.9 2.1E+02 0.0045 27.4 10.6 52 418-471 281-335 (556)
424 KOG0376 Serine-threonine phosp 53.6 14 0.00031 36.8 3.4 61 523-583 12-72 (476)
425 cd00280 TRFH Telomeric Repeat 53.6 79 0.0017 27.3 7.2 21 88-108 118-138 (200)
426 PF10366 Vps39_1: Vacuolar sor 53.6 1E+02 0.0022 24.1 7.5 27 414-440 41-67 (108)
427 COG3947 Response regulator con 52.6 2.1E+02 0.0045 27.0 15.5 60 415-475 282-341 (361)
428 KOG4507 Uncharacterized conser 51.7 68 0.0015 33.1 7.7 87 494-580 618-707 (886)
429 PF14689 SPOB_a: Sensor_kinase 51.5 36 0.00079 23.3 4.2 30 446-475 22-51 (62)
430 COG2912 Uncharacterized conser 51.2 72 0.0016 29.6 7.2 61 519-579 185-245 (269)
431 KOG4077 Cytochrome c oxidase, 51.0 95 0.0021 24.9 6.7 45 511-555 80-124 (149)
432 PF10579 Rapsyn_N: Rapsyn N-te 50.8 77 0.0017 23.0 5.7 46 527-572 18-66 (80)
433 cd08326 CARD_CASP9 Caspase act 50.7 35 0.00077 25.1 4.3 60 35-98 19-78 (84)
434 KOG4521 Nuclear pore complex, 50.3 4.5E+02 0.0098 30.2 15.0 79 450-530 986-1069(1480)
435 PF07720 TPR_3: Tetratricopept 49.5 54 0.0012 19.4 4.7 16 522-537 8-23 (36)
436 PF07163 Pex26: Pex26 protein; 49.3 1.5E+02 0.0033 27.7 8.8 85 218-304 90-181 (309)
437 PF08424 NRDE-2: NRDE-2, neces 49.3 2.6E+02 0.0056 27.2 15.4 118 500-629 48-171 (321)
438 PF11848 DUF3368: Domain of un 48.9 68 0.0015 20.5 4.9 35 121-155 11-45 (48)
439 cd08326 CARD_CASP9 Caspase act 48.0 72 0.0016 23.5 5.6 62 70-131 19-80 (84)
440 KOG4567 GTPase-activating prot 47.8 2.5E+02 0.0053 26.7 9.9 77 231-312 263-349 (370)
441 cd02679 MIT_spastin MIT: domai 47.0 53 0.0011 23.8 4.6 44 527-578 20-68 (79)
442 PF14561 TPR_20: Tetratricopep 46.8 1.2E+02 0.0026 22.7 8.5 62 514-575 21-85 (90)
443 PF08967 DUF1884: Domain of un 46.7 24 0.00053 25.3 2.7 24 609-632 8-31 (85)
444 PF10345 Cohesin_load: Cohesin 46.6 4.1E+02 0.0088 28.7 30.1 49 459-507 373-428 (608)
445 PF13929 mRNA_stabil: mRNA sta 46.4 2.6E+02 0.0056 26.4 14.5 113 195-307 143-264 (292)
446 PF11838 ERAP1_C: ERAP1-like C 46.3 2.8E+02 0.0061 26.7 16.4 109 463-572 146-260 (324)
447 KOG2659 LisH motif-containing 45.6 2.1E+02 0.0046 25.8 9.0 91 415-508 29-128 (228)
448 PF14689 SPOB_a: Sensor_kinase 45.5 38 0.00082 23.2 3.6 30 411-440 22-51 (62)
449 PRK10564 maltose regulon perip 45.3 45 0.00098 31.3 5.1 41 414-454 259-299 (303)
450 KOG2581 26S proteasome regulat 43.5 3.4E+02 0.0075 26.9 12.2 52 459-510 181-236 (493)
451 PF11663 Toxin_YhaV: Toxin wit 43.4 33 0.00071 27.7 3.4 34 221-256 105-138 (140)
452 COG4976 Predicted methyltransf 42.6 47 0.001 29.8 4.5 54 495-548 7-62 (287)
453 PF08424 NRDE-2: NRDE-2, neces 41.9 3.3E+02 0.0073 26.4 13.6 79 428-509 47-128 (321)
454 COG2178 Predicted RNA-binding 41.2 2.5E+02 0.0054 24.7 9.8 19 559-577 131-149 (204)
455 cd00280 TRFH Telomeric Repeat 40.9 1.9E+02 0.004 25.2 7.5 19 492-510 120-138 (200)
456 PF00244 14-3-3: 14-3-3 protei 40.2 2.7E+02 0.0059 25.5 9.4 32 319-350 8-39 (236)
457 PF11768 DUF3312: Protein of u 39.9 1.7E+02 0.0036 30.4 8.4 110 284-412 411-525 (545)
458 KOG0889 Histone acetyltransfer 39.9 1.1E+03 0.023 31.5 25.4 93 249-341 2554-2661(3550)
459 PF10255 Paf67: RNA polymerase 38.8 1.9E+02 0.0041 28.9 8.6 27 549-575 164-190 (404)
460 PF14044 NETI: NETI protein 38.5 30 0.00065 22.9 2.0 15 616-630 11-25 (57)
461 KOG2297 Predicted translation 38.4 3.6E+02 0.0077 25.7 12.5 198 230-475 186-399 (412)
462 KOG0687 26S proteasome regulat 37.8 3.8E+02 0.0082 25.8 13.2 94 449-544 106-210 (393)
463 cd08332 CARD_CASP2 Caspase act 37.8 78 0.0017 23.7 4.5 31 64-94 48-78 (90)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 37.1 2.2E+02 0.0048 22.9 9.1 47 159-205 78-124 (126)
465 PRK09857 putative transposase; 36.2 2.4E+02 0.0052 26.9 8.7 66 518-583 209-274 (292)
466 PHA03100 ankyrin repeat protei 36.0 5.1E+02 0.011 26.8 15.2 15 61-75 43-57 (480)
467 KOG1114 Tripeptidyl peptidase 35.9 6.8E+02 0.015 28.2 14.9 118 365-499 1166-1283(1304)
468 COG0735 Fur Fe2+/Zn2+ uptake r 35.8 2E+02 0.0044 23.9 7.2 63 232-295 7-69 (145)
469 KOG1308 Hsp70-interacting prot 35.5 8 0.00017 36.6 -1.2 63 526-588 125-187 (377)
470 PF04762 IKI3: IKI3 family; I 35.5 7.4E+02 0.016 28.5 18.5 101 448-574 813-926 (928)
471 cd08332 CARD_CASP2 Caspase act 35.5 1.6E+02 0.0035 22.0 5.9 58 71-128 24-81 (90)
472 cd08323 CARD_APAF1 Caspase act 35.3 1.9E+02 0.004 21.5 6.4 64 34-101 16-79 (86)
473 COG2178 Predicted RNA-binding 35.1 3.1E+02 0.0068 24.1 9.0 50 391-440 39-97 (204)
474 COG5187 RPN7 26S proteasome re 34.8 3E+02 0.0065 25.9 8.4 110 469-579 60-185 (412)
475 KOG2422 Uncharacterized conser 34.6 5.7E+02 0.012 26.9 13.6 155 419-577 349-515 (665)
476 PRK12798 chemotaxis protein; R 34.5 4.9E+02 0.011 26.1 19.4 189 386-579 86-287 (421)
477 PF11817 Foie-gras_1: Foie gra 34.3 1.9E+02 0.0041 26.7 7.6 53 520-572 183-241 (247)
478 KOG1839 Uncharacterized protei 34.2 3.4E+02 0.0074 31.5 10.3 154 421-574 941-1124(1236)
479 COG5108 RPO41 Mitochondrial DN 34.1 3.1E+02 0.0068 29.1 9.2 70 386-458 33-114 (1117)
480 PF09670 Cas_Cas02710: CRISPR- 33.9 4.9E+02 0.011 26.0 10.9 26 321-347 140-165 (379)
481 PF12069 DUF3549: Protein of u 33.7 4.6E+02 0.0099 25.5 12.9 88 386-476 171-259 (340)
482 KOG4521 Nuclear pore complex, 33.4 5.8E+02 0.013 29.4 11.5 48 181-228 1022-1071(1480)
483 smart00638 LPD_N Lipoprotein N 33.2 6.3E+02 0.014 27.0 24.7 62 281-344 310-372 (574)
484 PF07575 Nucleopor_Nup85: Nup8 32.6 6.4E+02 0.014 26.9 18.4 58 346-405 404-462 (566)
485 PF09454 Vps23_core: Vps23 cor 32.4 97 0.0021 21.5 3.9 49 410-459 6-54 (65)
486 KOG3807 Predicted membrane pro 32.2 4.6E+02 0.01 25.2 9.4 57 488-544 280-340 (556)
487 KOG1550 Extracellular protein 31.8 6.5E+02 0.014 26.8 25.3 178 396-579 343-539 (552)
488 PF00244 14-3-3: 14-3-3 protei 31.8 4.1E+02 0.0088 24.4 12.4 162 418-580 7-200 (236)
489 PF04034 DUF367: Domain of unk 31.5 2.8E+02 0.006 22.4 7.5 57 484-540 67-124 (127)
490 PF11817 Foie-gras_1: Foie gra 31.5 1.8E+02 0.0039 26.8 7.0 19 218-236 17-35 (247)
491 PRK13342 recombination factor 31.1 5.7E+02 0.012 25.9 17.2 105 228-350 154-268 (413)
492 COG2909 MalT ATP-dependent tra 31.0 7.9E+02 0.017 27.5 30.8 180 392-574 469-684 (894)
493 KOG0991 Replication factor C, 31.0 4.2E+02 0.009 24.2 14.8 147 386-558 135-281 (333)
494 cd08323 CARD_APAF1 Caspase act 30.7 1.4E+02 0.003 22.2 4.7 61 69-129 16-76 (86)
495 PHA02537 M terminase endonucle 30.6 2.2E+02 0.0048 25.9 6.9 30 17-46 85-114 (230)
496 COG5191 Uncharacterized conser 29.4 1.1E+02 0.0024 28.8 4.9 76 480-555 104-182 (435)
497 PF13934 ELYS: Nuclear pore co 29.0 4.4E+02 0.0096 23.9 13.1 70 453-526 114-183 (226)
498 PF06957 COPI_C: Coatomer (COP 29.0 1.8E+02 0.0039 29.3 6.7 44 505-548 288-333 (422)
499 COG4259 Uncharacterized protei 28.9 2.6E+02 0.0057 21.3 6.0 16 457-472 82-97 (121)
500 KOG1839 Uncharacterized protei 28.9 4.2E+02 0.0091 30.8 10.0 122 456-578 941-1086(1236)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-96 Score=799.83 Aligned_cols=623 Identities=29% Similarity=0.500 Sum_probs=607.1
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC----CChhhHHHH
Q 006580 12 KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ----KNCISWNIC 87 (640)
Q Consensus 12 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l 87 (640)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.+++..+.+++..+.+ +|+.+||.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 5788899999999999999999999999999999999999999999999999999999998888764 788999999
Q ss_pred HHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHH
Q 006580 88 LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGK 164 (640)
Q Consensus 88 l~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~ 164 (640)
+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+ +.+.+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 006580 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244 (640)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 244 (640)
+++..+.+.| +.||..+|++|+.+|++.|++++|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 309 ~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 309 EMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 006580 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324 (640)
Q Consensus 245 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 324 (640)
|..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|+++|++++|.++|++|.++|+.+||++|.+|++
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 006580 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403 (640)
Q Consensus 325 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 403 (640)
.|+.++|+.+|++|.. ++.||..||+.+|.+|++ |+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++
T Consensus 468 ~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 9999999999999986 599999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh
Q 006580 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483 (640)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 483 (640)
|+.+ .+|+.+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+.
T Consensus 547 f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 547 FNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999767999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
.+|++++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++++++|+++..|..|+++|+..|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCccCCceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCcccccc
Q 006580 564 RWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKLDV 637 (640)
Q Consensus 564 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~p~~~~~~~~ 637 (640)
+|++|.++.+.|+++|++++||+|||++++.+|.|.+++.+||+.++|+..++++.++|++.||.||+...++.
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 779 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765543
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.9e-81 Score=665.54 Aligned_cols=526 Identities=27% Similarity=0.489 Sum_probs=512.3
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHh---chhHHHHHHHHHHHhCCCCCchhHHH
Q 006580 109 EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQG-VRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGN 184 (640)
Q Consensus 109 ~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 184 (640)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|+ +.+.+.+++..|.+.| +.||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 3566789999999999999999999999998764 7899999999999998 7788999999999999 889999999
Q ss_pred HHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchH
Q 006580 185 SLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDK 264 (640)
Q Consensus 185 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 264 (640)
.|+.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCC
Q 006580 265 GKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR 344 (640)
Q Consensus 265 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 344 (640)
+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006580 345 PTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLT 423 (640)
Q Consensus 345 p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 423 (640)
||..||+.++.+|++ |.++.|.+++..+.+.|++||..++++|+++|+++|++++|.++|++|.+||+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 006580 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503 (640)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 503 (640)
++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 504 DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 504 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
+++++++..|+..+|++|+.+|..+|+++.|..+++++.+.+|++...|..|+.+|++.|+|++|.++++.|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCcccc
Q 006580 584 TGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDKL 635 (640)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~p~~~~~~ 635 (640)
||+||+++.+.+|.|++++..||...+++..+.++.++|++.||.||+...+
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~ 614 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELL 614 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhh
Confidence 9999999999999999999999999999999999999999999999987654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-80 Score=678.75 Aligned_cols=570 Identities=27% Similarity=0.407 Sum_probs=552.8
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC----CChhhHH
Q 006580 10 VNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ----KNCISWN 85 (640)
Q Consensus 10 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 85 (640)
..+|+..+++.++.++.+.|++++|..+++.|.+.|++|+..+|..++..+.+.+.++.+.+++..+.+ ++...+|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999987653 6788999
Q ss_pred HHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhH
Q 006580 86 ICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACH 162 (640)
Q Consensus 86 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~ 162 (640)
.++.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+ +...
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 7889
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 006580 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242 (640)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 242 (640)
+.+++..+.+.| +.+|..++++|+.+|++.|++++|.++|++|.++|.++||++|.+|++.|++++|+++|++|...|+
T Consensus 206 ~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 206 GREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 006580 243 SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTY 322 (640)
Q Consensus 243 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 322 (640)
.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|+.+||++|.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHH
Q 006580 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST 401 (640)
Q Consensus 323 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 401 (640)
++.|++++|+++|++|.+.|+.||..||+.++.+|+. |+++.|.++++.+.+.|+.|+..++++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 006580 402 EIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481 (640)
Q Consensus 402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 481 (640)
++|++|.++|+.+|+++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+. |+.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCc
Confidence 999999999999999999999999999999999999986 59999999999999999999999999999999988 9999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCChhHHHHHHHHHH
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ-LPSPLPYSLLTQAYA 560 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~ 560 (640)
+..++++|+++|+++|++++|.++|+++ .||..+|++++.+|+++|+.++|.++|++|.+.+ .||..+|..++.+|.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 9999999999999999999999999998 8999999999999999999999999999999885 478899999999999
Q ss_pred hcCChHHHHHHHHHHH-hCCCccCC
Q 006580 561 MRGRWEAIVRVKKVMR-KNGINKVT 584 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~-~~~~~~~~ 584 (640)
+.|++++|.++|+.|. +.|+.|+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999998 67887764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-66 Score=555.45 Aligned_cols=503 Identities=19% Similarity=0.268 Sum_probs=431.1
Q ss_pred CCchhhHHHHHHHHHccCCchHHHHHHhcCCCCC-----hhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHH
Q 006580 47 NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKN-----CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISG 121 (640)
Q Consensus 47 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~ 121 (640)
.++...|..++..+.+.|++++|.++|++|++++ ...++.++.+|.+.|.+++|.++|+.|..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566677888888888888888888888887644 34566677778888888888888888888888888888888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHH
Q 006580 122 YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFG 201 (640)
Q Consensus 122 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 201 (640)
|++.|+++.|.++|++|.+.|+.| |..+|+.||.+|++.|++++|.+
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~p---------------------------------D~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKA---------------------------------DCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCC---------------------------------CHHHHHHHHHHHHhCcCHHHHHH
Confidence 888888888888888888887555 55555777888888888888888
Q ss_pred HHhccC----CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--h
Q 006580 202 VFLNME----ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK--V 275 (640)
Q Consensus 202 ~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~ 275 (640)
+|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 888887 5788888888999999999999999999998889999999999999999999999999999999876 5
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHH
Q 006580 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR----WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351 (640)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 351 (640)
|+.||..+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7888989999999999999999999999988875 456889999999999999999999999999999999999999
Q ss_pred HHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CCChhHHHHHHHHHHhCC
Q 006580 352 CVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD----KRDLVSWNTIMMGLTQNG 426 (640)
Q Consensus 352 ~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 426 (640)
.++.+|.+ |+++.|.++++.|.+.|++|+..+|++||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999988 9999999999999999999999999999999999999999999999885 689999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH----hc------
Q 006580 427 RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC----QA------ 496 (640)
Q Consensus 427 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~------ 496 (640)
++++|+++|++|...|+.||..||+.++.+|++.|++++|.++++.|.+. |+.||..+|++++..|. ++
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999887 99999999999886643 22
Q ss_pred -------------CChHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Q 006580 497 -------------GQLGKAIDITSTMP---FQPGCSIWESILRASAIYGDVKLTENVAERMMDL-QLPSPLPYSLLTQAY 559 (640)
Q Consensus 497 -------------g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~ 559 (640)
+..++|..+|++|. +.||..+|+.++..++..+..+.+..+++.+... .+++..+|+.|++++
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 22467999999997 8999999999998777888999999998887654 568899999999988
Q ss_pred HhcCChHHHHHHHHHHHhCCCccCCc
Q 006580 560 AMRGRWEAIVRVKKVMRKNGINKVTG 585 (640)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~~~~~~~ 585 (640)
.+. .++|..++++|...|+.|+..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 432 368999999999999988753
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-66 Score=553.10 Aligned_cols=466 Identities=25% Similarity=0.364 Sum_probs=449.5
Q ss_pred CChhHHHHHHHHhhcCCChHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHccCCchHHHHHHhcCCC----CChhhHHHH
Q 006580 13 ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ----KNCISWNIC 87 (640)
Q Consensus 13 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l 87 (640)
++..+++.++..+.+.|++++|.++|+.|...+ +.|+..+|+.++.++++.++++.+.+++..|.+ ||..+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999999865 789999999999999999999999999999864 899999999
Q ss_pred HHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHH
Q 006580 88 LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGK 164 (640)
Q Consensus 88 l~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~ 164 (640)
+.+|++.|+++.|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+ ....+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 006580 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244 (640)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 244 (640)
+++..+.+.| +.+|..++++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 245 ~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 245 QLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 006580 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGR 324 (640)
Q Consensus 245 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 324 (640)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCChHHHHH
Q 006580 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIK-SGFDSNAVVASSLMEMYAKTGSIDSSTE 402 (640)
Q Consensus 325 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 402 (640)
.|+.++|+++|++|.+.|+.||..||+.++.+|.. |.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999 999999999999986 6999999999999999999999999999
Q ss_pred HHHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 006580 403 IFVKLD-KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480 (640)
Q Consensus 403 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 480 (640)
++++|. .|+..+|++|+.+|+.+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.++ |+.
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999998 79999999999999999999999999999975 5665 569999999999999999999999999988 875
Q ss_pred CC
Q 006580 481 PG 482 (640)
Q Consensus 481 p~ 482 (640)
..
T Consensus 561 k~ 562 (697)
T PLN03081 561 MH 562 (697)
T ss_pred cC
Confidence 43
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-65 Score=547.24 Aligned_cols=520 Identities=16% Similarity=0.204 Sum_probs=384.2
Q ss_pred CCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHH
Q 006580 11 NKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGF-NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLR 89 (640)
Q Consensus 11 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~ 89 (640)
.+++...|..++..+.+.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|..++|.++|+.|+.||..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445678899999999999999999999999999994 6788888999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhH
Q 006580 90 GLLKSDNLDTALKVFDEIP----EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACH 162 (640)
Q Consensus 90 ~~~~~~~~~~A~~~~~~~~----~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~ 162 (640)
+|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+++ +.+.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 48999999999999999999999999999999998888888877777776 6667
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccC------CCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 006580 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME------ELDIISWNSLISGCFNSGYGELALDQFYS 236 (640)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 236 (640)
|.++|+.|.+.| ..||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++
T Consensus 526 Al~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 526 AFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776 66777777777777777777777777777663 35666777777777777777777777777
Q ss_pred hHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh
Q 006580 237 MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR----WDY 312 (640)
Q Consensus 237 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 312 (640)
|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ +|.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 7777777777777777777777777777777777777777777777777777777776666666666666653 456
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
.+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++ |++++|.+++++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666 66666666666666666666666666666666
Q ss_pred HhcCChHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLD----KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~ 467 (640)
++.|+++.|.++|..|. .||..+|++++..|.+ ++++|.++.+.+..- .+ .......+..+.|.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f--~~--------g~~~~~n~w~~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSF--DS--------GRPQIENKWTSWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhh--hc--------cccccccchHHHHH
Confidence 66666666666666665 3566666666543321 233333332222210 00 00001112346788
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP---FQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 468 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
.+|++|.+. |+.||..+|+.++.++++.+..+.+..+++.+. ..|+..+|++++.++.+. .++|..++++|.+.
T Consensus 833 ~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 833 MVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 888888887 888888888888877777888888888888775 556777888888877432 35788888888887
Q ss_pred CC
Q 006580 545 QL 546 (640)
Q Consensus 545 ~p 546 (640)
+.
T Consensus 910 Gi 911 (1060)
T PLN03218 910 GV 911 (1060)
T ss_pred CC
Confidence 43
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-33 Score=315.59 Aligned_cols=549 Identities=11% Similarity=0.035 Sum_probs=328.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC---CChhhHHHHHHHHhcCC
Q 006580 19 SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ---KNCISWNICLRGLLKSD 95 (640)
Q Consensus 19 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~ 95 (640)
..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 334455566777777777777776654 44555666666777777777777777776654 23456666777777777
Q ss_pred ChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHHHHHHH
Q 006580 96 NLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGS 169 (640)
Q Consensus 96 ~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~~~~~~ 169 (640)
++++|.+.|+++.+ .+...+..+...+...|++++|+..|+.+.+....+.. ....+...+. +.+.+..+++.
T Consensus 378 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR-ADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh-hHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777777776553 23445666666667777777777777776654322211 1112222222 56666666666
Q ss_pred HHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 006580 170 MIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE---LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246 (640)
Q Consensus 170 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 246 (640)
+... .|.+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++...+ +.+.
T Consensus 457 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 457 LEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 6655 556666666666667777777777766666542 233445556666666666666666666666532 2344
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 006580 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYG 323 (640)
Q Consensus 247 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 323 (640)
.++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...+.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456666666666666666666666665553 23444555666666666666666666666543 34455666666666
Q ss_pred hCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHH
Q 006580 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402 (640)
Q Consensus 324 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 402 (640)
..|++++|...|+++.+.. +.+...+..+...+.. |+.+.|...++.+.+.. +.+...+..+...+...|++++|..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665532 1223334444444444 66666666666665543 3345555666666666666666666
Q ss_pred HHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 006580 403 IFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV 479 (640)
Q Consensus 403 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 479 (640)
+++.+.. .+...+..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~ 766 (899)
T TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--TH 766 (899)
T ss_pred HHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 6666652 24445555566666666666666666666653 34445555556666666666666666666655 23
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 480 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
+.+...+..+...|.+.|++++|.+.|+++. .++++.+++.+...+...|+ ++|+..++++++..|.++..+..++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3445556666666666666666666666654 23355566666666666666 55666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 006580 558 AYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 558 ~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
++...|++++|.++++++.+.+.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 66666666666666666665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.4e-33 Score=311.64 Aligned_cols=547 Identities=11% Similarity=0.025 Sum_probs=253.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC---CChhhHHHHHHHHhc
Q 006580 17 YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ---KNCISWNICLRGLLK 93 (640)
Q Consensus 17 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 93 (640)
.+..+...+.+.|++++|...++.+.+.. +.++..+..+...+.+.|++++|.+.|+++.+ .+...+..+...+..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 33344444445555555555555554433 33344444455555555555555555554432 122334444444445
Q ss_pred CCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHHHHH
Q 006580 94 SDNLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIH 167 (640)
Q Consensus 94 ~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~~~~ 167 (640)
.|++++|.+.|+.+.+ .+...+..++..+.+.|++++|..+++.+... .+++..++..+...+. +.+.|.+.+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555544432 11223334444455555555555555554432 1222233333333332 444555555
Q ss_pred HHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 006580 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE---LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244 (640)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 244 (640)
+.+++. .|.+...+..+...+...|++++|.+.|+.+.. .+..++..+...+.+.|+.++|..+++++...+ +.
T Consensus 489 ~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 489 EKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 555444 344444444455555555555555555554431 133344444455555555555555555544322 12
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 006580 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMIST 321 (640)
Q Consensus 245 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 321 (640)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+..++.+.|++++|...|+.+.+ .+...+..+...
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 23344444445555555555555555544332 22344445555555555555555555544432 233344444555
Q ss_pred HHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHH
Q 006580 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400 (640)
Q Consensus 322 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 400 (640)
+.+.|++++|...|+++.+.. +.+..++..+...+.. |+.+.|..+++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 555555555555555544421 1123333333333334 55555555555544443 33344444444555555555555
Q ss_pred HHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhC
Q 006580 401 TEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478 (640)
Q Consensus 401 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 478 (640)
...|+.+. .|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 799 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-- 799 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--
Confidence 55555443 2333444444455555555555555555554431 233344444444455555555555555555442
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 479 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
.+++...+..+...+...|+ .+|+++++++. ..| ++.++..+...+...|++++|...++++++.+|.++.++..++
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 23334444455555555555 44555554443 222 3344444444555555555555555555555555555555555
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 006580 557 QAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~m 575 (640)
.++.+.|++++|.+++++|
T Consensus 879 ~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 879 LALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.3e-24 Score=242.37 Aligned_cols=557 Identities=11% Similarity=0.071 Sum_probs=385.3
Q ss_pred hhhhcCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhH----------------HHHHHHHHccCCch
Q 006580 5 LKKAHVNKA-SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLG----------------NRCLDLYSRFGTSD 67 (640)
Q Consensus 5 ~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~ 67 (640)
+.+.....| ++..+..+...+.+.|+.++|.+.++++.+.. +.++... ..+...+...|+++
T Consensus 51 l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~ 129 (1157)
T PRK11447 51 LYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTE 129 (1157)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHH
Confidence 444444555 55677888899999999999999999999887 3443332 23344678899999
Q ss_pred HHHHHHhcCCCCChhhHH----HHHHHHhcCCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 68 DVLQLFDEIPQKNCISWN----ICLRGLLKSDNLDTALKVFDEIPE--P-DVVSWNSMISGYASCGYSDYALEMFSKMQL 140 (640)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~ 140 (640)
+|.+.|+...+.++.... .........|+.++|++.|+++.+ | +...+..+...+...|+.++|+..++++.+
T Consensus 130 eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~ 209 (1157)
T PRK11447 130 EALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAK 209 (1157)
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 999999998763322211 111222346899999999999874 3 455788888999999999999999998865
Q ss_pred CCC------------------CCChh-hHHH----------------H----------------HHHHh-----chhHHH
Q 006580 141 QGV------------------RPSGF-TFSI----------------L----------------LSTVS-----SACHGK 164 (640)
Q Consensus 141 ~g~------------------~p~~~-t~~~----------------l----------------l~~~~-----~~~~a~ 164 (640)
... .|... .+.. . ..+.. +.+.|.
T Consensus 210 ~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~ 289 (1157)
T PRK11447 210 SPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAI 289 (1157)
T ss_pred CCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHH
Confidence 321 00000 0000 0 00111 566666
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC--CCe---eeHHH------------HHHHHHhcCCh
Q 006580 165 QIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDI---ISWNS------------LISGCFNSGYG 227 (640)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~~~~ 227 (640)
..++..++. .|.+..++..|...|.+.|++++|...|++..+ |+. ..|.. ....+.+.|++
T Consensus 290 ~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 290 PELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence 777777666 466667777777777777777777777766553 221 11111 12345566777
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 228 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
++|...|++..+.. +.+...+..+...+...|++++|++.|+.+++... .+...+..+...|. .++.++|..+++.+
T Consensus 368 ~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l 444 (1157)
T PRK11447 368 AQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhC
Confidence 77777777776642 12334555566667777777777777777766542 23444555555553 34567777776665
Q ss_pred CCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChh-hHHHHHhhCCC-CChHHHHHHHHHHH
Q 006580 308 DRWD------------YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF-TLSCVLSSIPI-PPVEHGSQFHSMAI 373 (640)
Q Consensus 308 ~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~~l~~~~~-~~~~~a~~~~~~~~ 373 (640)
.... ...+..+...+...|++++|++.|++..+. .|+.. .+..+...+.. |+.++|...++.+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4321 112344556677889999999999988874 45533 33344444555 99999999998888
Q ss_pred HhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC----Ch---------hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR----DL---------VSWNTIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 374 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
+.. +.++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|+++++.
T Consensus 523 ~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 523 QQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 654 344555555556677888999999999887632 11 1123456678889999999998871
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHH
Q 006580 441 EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIW 518 (640)
Q Consensus 441 ~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~ 518 (640)
.+++...+..+...+.+.|++++|+..|+...+. -+.+...+..++..|...|++++|++.++... ..| +...+
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 3455567778888999999999999999999874 34467788999999999999999999999887 455 56677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 519 ESILRASAIYGDVKLTENVAERMMDLQLPSP------LPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 519 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
..+..++...|++++|.++++++++..|+++ ..+..++.++...|++++|+..++....
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888899999999999999999998866433 4667789999999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.4e-23 Score=236.10 Aligned_cols=549 Identities=13% Similarity=0.057 Sum_probs=355.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC--CChhhH-----------
Q 006580 18 CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ--KNCISW----------- 84 (640)
Q Consensus 18 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~----------- 84 (640)
+....+.+...++.+.|.+.++++.... +.++.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 5566688889999999999999999876 56788899999999999999999999999876 332211
Q ss_pred ------HHHHHHHhcCCChhHHHHHhccCCCCCcchHH----HHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006580 85 ------NICLRGLLKSDNLDTALKVFDEIPEPDVVSWN----SMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILL 154 (640)
Q Consensus 85 ------~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 154 (640)
..+...+.+.|++++|.+.|+.+.+.++.... .........|+.++|+..|+++.+. .|+.......+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 22334678899999999999998753222211 1112223469999999999999886 45543333333
Q ss_pred HHHh----chhHHHHHHHHHHHhCC---------------CC---CchhHHH----------------------------
Q 006580 155 STVS----SACHGKQIHGSMIRSGL---------------SL---SNVVLGN---------------------------- 184 (640)
Q Consensus 155 ~~~~----~~~~a~~~~~~~~~~~~---------------~~---~~~~~~~---------------------------- 184 (640)
..+. +.++|.+.++.+.+... .+ .....+.
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 2222 66778777777654320 00 0000111
Q ss_pred ------HHHHhhhcCCChHHHHHHHhccCC--C-CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcc---hHH--
Q 006580 185 ------SLIDMYGKLGVLYYAFGVFLNMEE--L-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY---TIS-- 250 (640)
Q Consensus 185 ------~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---t~~-- 250 (640)
.+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESL 345 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHH
Confidence 112334455666666666665542 2 44555566666666666666666666665432 2211 111
Q ss_pred ----------HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHH
Q 006580 251 ----------IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINV 317 (640)
Q Consensus 251 ----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 317 (640)
.....+.+.|++++|...++.+++.. +.+...+..+..++...|++++|++.|+++.+ .+...+..
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 11223445666666666666666653 22344555566666666666666666666543 22334444
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhCCCCC--------ChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 006580 318 MISTYGRYGFGEVALELFQLMLREDIRP--------TEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLM 388 (640)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~m~~~~~~p--------~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 388 (640)
+...|. .++.++|...++.+....... ....+......+.. |+.++|...++++.+.. |.++..+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444443 345566666655443221000 00011122223334 77778887777777654 34556666777
Q ss_pred HHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHH
Q 006580 389 EMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI---------TLAAVLLA 456 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~ 456 (640)
..|.+.|++++|...|+++. .| +...+..+...+...++.++|+..++++......++.. .+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 77888888888888877764 23 44444444455566777888877777654332222221 12234556
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 534 (640)
+...|+.++|..+++ ..+++...+..+...+.+.|++++|++.|+++. ..| +...+..++..+...|++++|
T Consensus 583 l~~~G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 777888888888876 124556677788899999999999999999887 555 688999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
++.++++.+..|+++..+..++.++...|++++|.++++++.+...
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999999999999999999999999999999999987653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=7.8e-21 Score=204.06 Aligned_cols=534 Identities=10% Similarity=-0.035 Sum_probs=329.4
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCCh--hhHHHHHHHHhcCCChhHHHHHh
Q 006580 27 SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC--ISWNICLRGLLKSDNLDTALKVF 104 (640)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~ 104 (640)
..|++++|...|+...+.. |-++.++..|...|.+.|+.++|...+++..+.++ ..|..++..+ +++++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3377777777777777766 44467777777777777777777777777665322 2333333222 6667777777
Q ss_pred ccCCC--CC-cchHHHHHHH--------HHhCCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHHh---chhHHHHHHHH
Q 006580 105 DEIPE--PD-VVSWNSMISG--------YASCGYSDYALEMFSKMQLQGVRPSGFTFSIL-LSTVS---SACHGKQIHGS 169 (640)
Q Consensus 105 ~~~~~--~~-~~~y~~li~~--------~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~---~~~~a~~~~~~ 169 (640)
+++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... ...+. +.+.+...++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 77653 32 3334333333 3333 44444444 3333333344433333 23332 55667777777
Q ss_pred HHHhCCCCCchhHHHHHHHhhhc-CCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCC-CCcc
Q 006580 170 MIRSGLSLSNVVLGNSLIDMYGK-LGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYS-PDEY 247 (640)
Q Consensus 170 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~ 247 (640)
+.+.+ +.+......|...|.. .++ +++..+++...+.|...+..+...|.+.|+.++|..+++++...-.. |...
T Consensus 208 L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 208 ARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 77763 4455555666666666 355 66666655444456666667777777777777777777666432111 2222
Q ss_pred hHHHH------------------------------HHHHhccCCchHHHHH-----------------------------
Q 006580 248 TISIV------------------------------INACTKLRNLDKGKQV----------------------------- 268 (640)
Q Consensus 248 t~~~l------------------------------l~~~~~~~~~~~a~~~----------------------------- 268 (640)
++..+ +..+.+.++++.++++
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 22111 2222233333333322
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----ChhhHHHHHHHHHhCCC---hHHHHHH-----
Q 006580 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR-W-----DYAVINVMISTYGRYGF---GEVALEL----- 334 (640)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~a~~~----- 334 (640)
+..|.+.. +-+......+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 22222210 11333333344445667888888888877654 1 12233355666666655 3333333
Q ss_pred -------HH----------HHhh-CCCCCC--hhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 006580 335 -------FQ----------LMLR-EDIRPT--EFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393 (640)
Q Consensus 335 -------~~----------~m~~-~~~~p~--~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 393 (640)
.. .... .+..|+ .......+..|.. +..++|...+....... |+......+...+..
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 11 1111 112233 2222222223333 77777888776666553 444433344555568
Q ss_pred cCChHHHHHHHHhCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHH
Q 006580 394 TGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVF 470 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~ 470 (640)
.|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+.. |+. ..+..+...+...|++++|...+
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8999999999987762 445556677778888999999999999998853 443 33334444555669999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
++..+. .|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|++++|+..++++++.+|.+
T Consensus 600 ~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 600 TRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 988753 5678888888999999999999999999887 556 67788888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+..+..++.++...|++++|+..+++..+..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887755
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=7.4e-20 Score=196.60 Aligned_cols=556 Identities=11% Similarity=0.016 Sum_probs=393.9
Q ss_pred hhhcCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC--C-Ch
Q 006580 6 KKAHVNKA-SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ--K-NC 81 (640)
Q Consensus 6 ~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~ 81 (640)
+..-...| +..++..|...+...|++++|....++..+.. +.|...+..+ ..+ +++++|..+++++.. | +.
T Consensus 68 ~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~n~ 142 (987)
T PRK09782 68 EYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTVEELLAQQKACD 142 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHHHHHHHhCCCCh
Confidence 33344455 45677888899999999999999999999886 3445544444 333 899999999999875 3 34
Q ss_pred hhHHHHHHH--------HhcCCChhHHHHHhccCCCCC--cchHHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCChhhH
Q 006580 82 ISWNICLRG--------LLKSDNLDTALKVFDEIPEPD--VVSWNSM-ISGYASCGYSDYALEMFSKMQLQGVRPSGFTF 150 (640)
Q Consensus 82 ~~~~~ll~~--------~~~~~~~~~A~~~~~~~~~~~--~~~y~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 150 (640)
..+..+... |.+.+...++++ .....|+ ..+.... .+.|.+.|++++|+.+++++.+.+.... .-.
T Consensus 143 ~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~-~~~ 219 (987)
T PRK09782 143 AVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSA-AER 219 (987)
T ss_pred hHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCH-HHH
Confidence 455555554 777766666666 3333343 4444444 8999999999999999999999864332 222
Q ss_pred HHHHHHHhc-h--hHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC-----CCeee---------
Q 006580 151 SILLSTVSS-A--CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-----LDIIS--------- 213 (640)
Q Consensus 151 ~~ll~~~~~-~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~--------- 213 (640)
..+-.++.. . +.+..+++ .. ...+..++..++..|.+.|+.++|.++++++.. |+..+
T Consensus 220 ~~L~~ay~q~l~~~~a~al~~----~~-lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~ 294 (987)
T PRK09782 220 RQWFDVLLAGQLDDRLLALQS----QG-IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS 294 (987)
T ss_pred HHHHHHHHHhhCHHHHHHHhc----hh-cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhcc
Confidence 222222222 1 33333322 22 456889999999999999999999999999872 11111
Q ss_pred ---------------------HHHHHHHHHhcCChhHHHHHHHHh--------HHCCCC-------------------C-
Q 006580 214 ---------------------WNSLISGCFNSGYGELALDQFYSM--------RYSGYS-------------------P- 244 (640)
Q Consensus 214 ---------------------~~~li~~~~~~~~~~~A~~~~~~m--------~~~g~~-------------------p- 244 (640)
.-.++..+.+.++++-+.++..-- +-.+.. |
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~ 374 (987)
T PRK09782 295 ANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA 374 (987)
T ss_pred CchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC
Confidence 112245556666666555442110 000000 1
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---HHHHHHHH---------------
Q 006580 245 DEYTISIVINACTKLRNLDKGKQVFALSVKV-G-FLSNSIVLSATIDLFSKCNR---LEDSVRLF--------------- 304 (640)
Q Consensus 245 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~--------------- 304 (640)
+......+--...+.|+.++|.++++..... + -.++......++..|.+.+. ..++..+-
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 2222222333345778899999999988763 1 22345566688888888876 33333331
Q ss_pred ----------HhcCC---C--ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHH
Q 006580 305 ----------EQLDR---W--DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQF 368 (640)
Q Consensus 305 ----------~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~ 368 (640)
..... . +...|..+..++.. ++.++|+..+.+.... .|+......+...+.. |+.+.|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111 2 45567777777776 7888999988887764 4665543333333445 999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006580 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVS---WNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 445 (640)
++.+... +|+......+..++.+.|++++|...++...+.++.. +..+.......|++++|+..+++..+ ..|
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P 607 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAP 607 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCC
Confidence 9987654 4444555667788899999999999999887533322 33333344456999999999999998 467
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 006580 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILR 523 (640)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 523 (640)
+...+..+..++.+.|++++|+..+++.... -+.+...+..+..++...|++++|++.+++.. ..| ++..+..+..
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888999999999999999999999998863 34456678888889999999999999999987 556 7889999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
++...|++++|+..+++++++.|.+..+....++...+..+++.|.+-+++...-++...
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999999999999888876655443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-20 Score=179.63 Aligned_cols=384 Identities=14% Similarity=0.150 Sum_probs=312.0
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHH-
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI- 251 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~- 251 (640)
.|.-..+|..+.+.+-..|++++|+..++.+.+. .+..|-.+..++...|+.+.|.+.|.+..+ +.|+.....+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 4556778888888888888888888888887642 457788888888889999999988888876 4466554333
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhCCCh
Q 006580 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY---AVINVMISTYGRYGFG 328 (640)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~ 328 (640)
+.......|++++|..-|...++... -=...|+.|...+-..|+...|+..|++...-|+ ..|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 33444567888888888888777642 1234678888888889999999999988876443 4677888889999999
Q ss_pred HHHHHHHHHHhhCCCCCChhh-HHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 329 EVALELFQLMLREDIRPTEFT-LSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406 (640)
Q Consensus 329 ~~a~~~~~~m~~~~~~p~~~t-~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 406 (640)
+.|+..|.+... ..|+... +..+-..+.. |.++.|...+++.++.. |.-+..|+.|..++-..|++.+|.+.+.+
T Consensus 269 d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 999998887765 4666543 3344444555 99999999999888764 44577899999999999999999999998
Q ss_pred CCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 006580 407 LDK--R-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482 (640)
Q Consensus 407 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 482 (640)
... | ...+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..+++.. .+.|+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~ 420 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPT 420 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCch
Confidence 873 3 567889999999999999999999999988 66765 588999999999999999999999887 56787
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 483 -EEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG-CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 483 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
...|+.+...|...|+.+.|.+.+.++. +.|. ...++.|...|...|+..+|+..|+.++++.|+.+.+|.+++.++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 4589999999999999999999999987 7774 678999999999999999999999999999999999999998887
Q ss_pred HhcCChHHHHH
Q 006580 560 AMRGRWEAIVR 570 (640)
Q Consensus 560 ~~~g~~~~a~~ 570 (640)
.---+|.+-.+
T Consensus 501 q~vcdw~D~d~ 511 (966)
T KOG4626|consen 501 QIVCDWTDYDK 511 (966)
T ss_pred HHHhcccchHH
Confidence 76666655333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-19 Score=172.24 Aligned_cols=427 Identities=13% Similarity=0.097 Sum_probs=282.5
Q ss_pred HHHHHHHHHccCCchHHHHHHhcCCCCCh---hhHHHHHHHHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCC
Q 006580 53 GNRCLDLYSRFGTSDDVLQLFDEIPQKNC---ISWNICLRGLLKSDNLDTALKVFDEIPE---PDVVSWNSMISGYASCG 126 (640)
Q Consensus 53 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~ 126 (640)
...|..-..+.|++.+|.+-...+-+.|+ ...-.+-..+.+..+.+.....-....+ ....+|.-+.+.+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 45566666677888888876665544222 1122222334444444433332222221 23457777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhcc
Q 006580 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206 (640)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 206 (640)
++++|+.+++.|.+. .|.....|..+..++...|+.+.|...|.+.
T Consensus 131 ~~~~al~~y~~aiel----------------------------------~p~fida~inla~al~~~~~~~~a~~~~~~a 176 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL----------------------------------KPKFIDAYINLAAALVTQGDLELAVQCFFEA 176 (966)
T ss_pred hHHHHHHHHHHHHhc----------------------------------CchhhHHHhhHHHHHHhcCCCcccHHHHHHH
Confidence 888888888888775 3445556666666666666666666666655
Q ss_pred CCCCe--eeHHH-HHHHHHhcCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc-h
Q 006580 207 EELDI--ISWNS-LISGCFNSGYGELALDQFYSMRYSGYSPD-EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN-S 281 (640)
Q Consensus 207 ~~~~~--~~~~~-li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 281 (640)
.+-|. ....+ +-..+-..|+.++|...+.+..+. .|. ...|+.|...+-..|+...|.+-|++.++.. |+ .
T Consensus 177 lqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~ 252 (966)
T KOG4626|consen 177 LQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFL 252 (966)
T ss_pred HhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Ccch
Confidence 53322 22111 222233356666666666665542 233 2356666666666666666666666666543 22 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHhhC
Q 006580 282 IVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT-EFTLSCVLSSI 357 (640)
Q Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~~l~~~ 357 (640)
..|-.|...|...+.++.|+..+.+... ...+++..|...|-..|+.+-|+..|++..+. .|+ ...|+.+-.++
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANAL 330 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHH
Confidence 3555666666666666666666665432 23445556666666666677777766666653 444 33566666666
Q ss_pred CC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHH
Q 006580 358 PI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLD 433 (640)
Q Consensus 358 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 433 (640)
.. |++.+|...+.+..... +......+.|...|...|.+++|..+|..... | -...++.|...|-++|+.++|+.
T Consensus 331 kd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred HhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 66 77777777776666654 33345567799999999999999999998774 3 34578999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006580 434 VFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP- 510 (640)
Q Consensus 434 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 510 (640)
.|++.++ ++|+.. .|+.+...|-..|+.+.|++.+.+.. .+.|. .+..+.|...|..+|++.+|+.-+++..
T Consensus 410 ~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 410 CYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 9999998 788874 89999999999999999999999887 44665 5678899999999999999999999987
Q ss_pred CCCC-HHHHHHHHHHH
Q 006580 511 FQPG-CSIWESILRAS 525 (640)
Q Consensus 511 ~~~~-~~~~~~l~~~~ 525 (640)
.+|| +..+..++-..
T Consensus 485 lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 485 LKPDFPDAYCNLLHCL 500 (966)
T ss_pred cCCCCchhhhHHHHHH
Confidence 7886 44566555444
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.8e-18 Score=179.82 Aligned_cols=419 Identities=13% Similarity=0.003 Sum_probs=269.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcC
Q 006580 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193 (640)
Q Consensus 114 ~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 193 (640)
.+......+.+.|++++|+..|++..+. .| +...|..+..+|.+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p---------------------------------~~~~~~n~a~~~~~l 173 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KP---------------------------------DPVYYSNRAACHNAL 173 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC---------------------------------chHHHHHHHHHHHHh
Confidence 3456677888999999999999998763 33 344455666666677
Q ss_pred CChHHHHHHHhccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 006580 194 GVLYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFA 270 (640)
Q Consensus 194 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 270 (640)
|++++|+..++...+. +...|..+..+|...|++++|+..|......+- .+......++..... ..+.....
T Consensus 174 ~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~ 248 (615)
T TIGR00990 174 GDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAK 248 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHH
Confidence 7777777766665532 334566666677777777777766655543211 111111111111111 11112222
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHH---HHhCCChHHHHHHHHHHhhCC-C
Q 006580 271 LSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY---AVINVMIST---YGRYGFGEVALELFQLMLRED-I 343 (640)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~ 343 (640)
..++.. +++...+..+.. |...........-+....+.+. ..+..+... ....+++++|.+.|++..+.+ .
T Consensus 249 ~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 249 EILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred HHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 222221 111112222222 1111111111111111111111 111111111 123466778888888877654 3
Q ss_pred CCChh-hHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHH
Q 006580 344 RPTEF-TLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTI 418 (640)
Q Consensus 344 ~p~~~-t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 418 (640)
.|+.. .+..+-..+.. |+.+.|...++.+.+.. +.+...+..+...+...|++++|...|+...+ .+...|..+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34333 23333333344 88888888888777653 33456777788889999999999999988762 357788999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 497 (640)
...+...|++++|+..|++..+. .|+ ...+..+...+.+.|++++|+..++...+. .+.+...+..+..++...|
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence 99999999999999999999985 454 557777888899999999999999998863 3445778899999999999
Q ss_pred ChHHHHHHHHhCC-CCCC-HH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 006580 498 QLGKAIDITSTMP-FQPG-CS-------IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 498 ~~~~A~~~~~~~~-~~~~-~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 568 (640)
++++|++.|++.. ..|+ .. .++.....+...|++++|.++++++++++|.+...+..+++++...|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999876 4442 11 1222223344469999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 006580 569 VRVKKVMRKNG 579 (640)
Q Consensus 569 ~~~~~~m~~~~ 579 (640)
.+++++..+..
T Consensus 562 i~~~e~A~~l~ 572 (615)
T TIGR00990 562 LKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.8e-19 Score=179.90 Aligned_cols=292 Identities=12% Similarity=0.119 Sum_probs=201.9
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHhCCChH
Q 006580 257 TKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD-------YAVINVMISTYGRYGFGE 329 (640)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~ 329 (640)
...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+.... ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 33444445555555444432 1233344455555555555555555555443311 124555666667777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 006580 330 VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK 409 (640)
Q Consensus 330 ~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 409 (640)
+|..+|+++.+.. +.+...+..++..+.+.|++++|.+.++.+.+
T Consensus 125 ~A~~~~~~~l~~~-----------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 125 RAEELFLQLVDEG-----------------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred HHHHHHHHHHcCC-----------------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 7777777666531 22233445566666666777777666666652
Q ss_pred --CC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 006580 410 --RD------LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481 (640)
Q Consensus 410 --~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 481 (640)
|+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +...
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~ 247 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEY 247 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-Chhh
Confidence 11 1234567777888999999999999998752 233457777888899999999999999998864 2222
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
....+..++.+|.+.|++++|.+.++++. ..|+...+..++..+.+.|++++|..+++++++..|++. .+..++..+.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~ 326 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhh
Confidence 24567888999999999999999999887 677777778899999999999999999999999998775 4555555554
Q ss_pred h---cCChHHHHHHHHHHHhCCCccCCcee
Q 006580 561 M---RGRWEAIVRVKKVMRKNGINKVTGCS 587 (640)
Q Consensus 561 ~---~g~~~~a~~~~~~m~~~~~~~~~~~~ 587 (640)
. .|+.+++..++++|.+++++++|...
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 3 56999999999999999999998643
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=8.2e-17 Score=162.05 Aligned_cols=549 Identities=14% Similarity=0.067 Sum_probs=389.0
Q ss_pred HHHHh--hcCCChHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHH---hc
Q 006580 21 LIDRC--LSFKSFDFAKTIHGHLFKLG--FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGL---LK 93 (640)
Q Consensus 21 ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~---~~ 93 (640)
|.++| ...+++..|..+|..+.... .+||+. -.+...+.+.++.+.|+..|+...+.|+...++++... ..
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLN 245 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 34444 45689999999999977654 445543 33446677889999999999998886665444433321 12
Q ss_pred ---CCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHh---chhH
Q 006580 94 ---SDNLDTALKVFDEIP---EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPS--GFTFSILLSTVS---SACH 162 (640)
Q Consensus 94 ---~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~---~~~~ 162 (640)
...+..+..++...- ..+++..+.|.+-|.-.|++..+..+...+......-. ...|-.+-++.. +++.
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 223445555555433 36788899999999999999999999999887532111 122333333333 8899
Q ss_pred HHHHHHHHHHhCCCCCc-hhHHHHHHHhhhcCCChHHHHHHHhccCCCC---eeeHHHHHHHHHhcC----ChhHHHHHH
Q 006580 163 GKQIHGSMIRSGLSLSN-VVLGNSLIDMYGKLGVLYYAFGVFLNMEELD---IISWNSLISGCFNSG----YGELALDQF 234 (640)
Q Consensus 163 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~----~~~~A~~~~ 234 (640)
|..++.+..+.. +.+ ...+-.|..+|.+.|+.+.+...|+.+.... ..+...|...|...+ ..+.|..++
T Consensus 326 A~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 326 AFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 999998888873 444 5566788899999999999999999987432 334444445555443 346666666
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 006580 235 YSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALS----VKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310 (640)
Q Consensus 235 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 310 (640)
.+....- +.|...|..+...+... +...+..+|..+ ...+-++.+.+.|.+...+...|++++|...|+.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 6665532 33455666665555544 433336555544 34566688899999999999999999999999876532
Q ss_pred -------Ch------hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC--CChHHHHHHHHHHHHh
Q 006580 311 -------DY------AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI--PPVEHGSQFHSMAIKS 375 (640)
Q Consensus 311 -------~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~~~a~~~~~~~~~~ 375 (640)
+. .+-..+...+-..++++.|.+.|..+.+. .|.-++--.-+.++++ +...+|...+..+...
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 22 12233555666778999999999999885 5665544444434444 8888888888887765
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCChhHHHHHHHHHHh------------CCChHHHHHHHHHH
Q 006580 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-----KRDLVSWNTIMMGLTQ------------NGRAAETLDVFEEL 438 (640)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~m 438 (640)
+ ..++...+.+...|.+...+..|..-|..+. .+|+.+.-+|...|.+ .+..++|+++|.+.
T Consensus 560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 4 4555566667778888888888888666554 2355555455554432 34578899999998
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC
Q 006580 439 LEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP----FQPG 514 (640)
Q Consensus 439 ~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~ 514 (640)
+... +-|..+-+.+.-.++..|++..|..+|..+.+. ..-...+|-.+.++|..+|++..|+++|+... .+.+
T Consensus 639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 8852 446667777888889999999999999999885 23455678899999999999999999999876 3447
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-------------------CChHHHHHHHHHH
Q 006580 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR-------------------GRWEAIVRVKKVM 575 (640)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~m 575 (640)
..+.+.|..++...|++.+|.+.+..++...|.++..-.+++-...+. +..+.|.++|..|
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~l 795 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTEL 795 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998888777666555443 3567788888888
Q ss_pred HhCCCc
Q 006580 576 RKNGIN 581 (640)
Q Consensus 576 ~~~~~~ 581 (640)
...+-+
T Consensus 796 s~~~d~ 801 (1018)
T KOG2002|consen 796 SKNGDK 801 (1018)
T ss_pred HhcCCC
Confidence 887654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.8e-16 Score=170.81 Aligned_cols=367 Identities=8% Similarity=-0.018 Sum_probs=222.3
Q ss_pred CCchhHHHHHHHhhhcCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 006580 177 LSNVVLGNSLIDMYGKLGVLYYAFGVFLNME---ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVI 253 (640)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 253 (640)
+.+...+..+...+.+.|++++|..+++... ..+...+..+...+...|++++|+..+++..+. .|+...+..+.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la 123 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALA 123 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3445556666667777777777777777643 223445556666677777777777777777654 23222255566
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------hHHHHHHHHH--
Q 006580 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA--------VINVMISTYG-- 323 (640)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-- 323 (640)
.++...|+.+.|...++.+++... .+...+..+..++...|..+.|+..++.... ++. ....++....
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccc
Confidence 666677777777777777766642 2344445566666666777777776666554 111 1111111111
Q ss_pred ---hCCCh---HHHHHHHHHHhhC-CCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcC
Q 006580 324 ---RYGFG---EVALELFQLMLRE-DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNA-VVASSLMEMYAKTG 395 (640)
Q Consensus 324 ---~~~~~---~~a~~~~~~m~~~-~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 395 (640)
..+++ ++|++.++.+.+. ...|+.. +.. ......+.++...|
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~------------------------------~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDAT------------------------------ADYQRARIDRLGALLARD 251 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccc------------------------------hHHHHHHHHHHHHHHHhh
Confidence 11112 3344444444432 1111110 000 00001122334557
Q ss_pred ChHHHHHHHHhCCCCC---hh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHH
Q 006580 396 SIDSSTEIFVKLDKRD---LV-SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-----RITLAAVLLACNYGGFVDKG 466 (640)
Q Consensus 396 ~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~A 466 (640)
++++|...|+.+.+.+ +. ....+...|...|++++|+..|+++... .|. ......+..++...|++++|
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 7788888887776421 11 1122456777788888888888887653 222 23445556667778888888
Q ss_pred HHHHHHhHHhhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCh
Q 006580 467 MLVFSAMKEEYG----------VMPG---EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDV 531 (640)
Q Consensus 467 ~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 531 (640)
.+.++.+..... -.|+ ...+..+...+...|++++|++.++++. ..| +...+..+...+...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 888887765310 0122 1234556677788888888888888876 344 677888888888888888
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 532 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
++|++.++++++.+|+++..+..++..+...|++++|+.+++.+.+..
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888888887653
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.3e-18 Score=173.25 Aligned_cols=270 Identities=14% Similarity=0.083 Sum_probs=177.6
Q ss_pred CCchhHHHHHHHhhhcCCChHHHHHHHhccCCC-C------eeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchH
Q 006580 177 LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-D------IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249 (640)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~ 249 (640)
|.+..++..+...+...|++++|..+++.+... + ...+..+...|.+.|++++|..+|+++.+. .+++..++
T Consensus 66 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~ 144 (389)
T PRK11788 66 PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGAL 144 (389)
T ss_pred cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHH
Confidence 445556666666777777777777777665532 1 134566677777777777777777777653 22345567
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006580 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNS----IVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTY 322 (640)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 322 (640)
..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+ .+...+..+...+
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH
Confidence 77777777777777777777777665433221 1344566666777777777777776653 2344566667777
Q ss_pred HhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHH
Q 006580 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402 (640)
Q Consensus 323 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 402 (640)
.+.|++++|.+.|+++.+.+ |+ .....++.++.+|.+.|++++|..
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~--p~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQD--PE--------------------------------YLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHC--hh--------------------------------hHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777776532 11 112334556677777777777777
Q ss_pred HHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhHHhh
Q 006580 403 IFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY---GGFVDKGMLVFSAMKEEY 477 (640)
Q Consensus 403 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~~~ 477 (640)
.++++. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++.+.++
T Consensus 271 ~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~- 347 (389)
T PRK11788 271 FLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE- 347 (389)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-
Confidence 777765 355556677777788888888888888877773 6777777777766553 45777888888887776
Q ss_pred CCCCChh
Q 006580 478 GVMPGEE 484 (640)
Q Consensus 478 ~~~p~~~ 484 (640)
++.|++.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 6666665
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.3e-16 Score=169.09 Aligned_cols=418 Identities=11% Similarity=-0.007 Sum_probs=269.8
Q ss_pred HHHHHHHHhcCCChhHHHHHhccCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchh
Q 006580 84 WNICLRGLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSAC 161 (640)
Q Consensus 84 ~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 161 (640)
+......+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|+..++...+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-------------------- 189 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL-------------------- 189 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------------------
Confidence 4456777888999999999999876 377788889999999999999999999998875
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCe---eeHHHHHHHHHhcCChhHHHHHHHHhH
Q 006580 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDI---ISWNSLISGCFNSGYGELALDQFYSMR 238 (640)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~ 238 (640)
.|.+...+..+..+|...|++++|...|......+. .....++..+.. ..+........
T Consensus 190 --------------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l 251 (615)
T TIGR00990 190 --------------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEIL 251 (615)
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455666777777888888888888776654432111 111111111111 12222222222
Q ss_pred HCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch-hHHHHHHHH---HHhcCCHHHHHHHHHhcCCC----
Q 006580 239 YSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS-IVLSATIDL---FSKCNRLEDSVRLFEQLDRW---- 310 (640)
Q Consensus 239 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~---- 310 (640)
+.. +++...+..+.. +...........-+....+ ..+.. ..+..+... ....+++++|.+.|+...+.
T Consensus 252 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 252 ETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 211 111122222211 1111111111111111100 01110 001111111 12235677777777766532
Q ss_pred --ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCCh-hhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHH
Q 006580 311 --DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE-FTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASS 386 (640)
Q Consensus 311 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 386 (640)
....|+.+...+...|++++|+..|++..+. .|+. ..|..+...+.. |+++.|...++.+.+.. +.+..++..
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 2345666666777777777777777777664 3442 234444444444 77777777777776653 455677888
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 463 (640)
+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++.... .+.+...+..+...+...|++
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCH
Confidence 88999999999999999998873 3 5667888888999999999999999999874 233456888888999999999
Q ss_pred HHHHHHHHHhHHhhCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 006580 464 DKGMLVFSAMKEEYGVMPGE-E-------HYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 464 ~~A~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 533 (640)
++|+..|+...+. .|+. . .++.....+...|++++|.+++++.. ..| +...+..+...+...|++++
T Consensus 484 ~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 484 DEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999998753 2321 1 12222233445799999999999875 556 45678999999999999999
Q ss_pred HHHHHHHHHhcCCCChh
Q 006580 534 TENVAERMMDLQLPSPL 550 (640)
Q Consensus 534 a~~~~~~~~~~~p~~~~ 550 (640)
|...++++.++.+....
T Consensus 561 Ai~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 561 ALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhccHHH
Confidence 99999999999765433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=8.5e-17 Score=169.55 Aligned_cols=350 Identities=12% Similarity=-0.019 Sum_probs=269.0
Q ss_pred cCCChHHHHHHHhccCCC------CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 006580 192 KLGVLYYAFGVFLNMEEL------DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265 (640)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 265 (640)
+..+++.-.-.|..-.+. +......++..+.+.|++++|..+++........ +...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 445555555555554421 2334456778889999999999999999875422 334555666777789999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCC
Q 006580 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLRED 342 (640)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 342 (640)
...++.+.+.. +.+...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998875 34566788889999999999999999998865 356678889999999999999999999887654
Q ss_pred CCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHH
Q 006580 343 IRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTI 418 (640)
Q Consensus 343 ~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 418 (640)
..+....+ .+ ..+.. |++++|...++.+.+....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 P~~~~a~~-~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIA-TC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCHHHHH-HH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33322222 22 23445 99999999998887765444455555667788899999999999998773 356778888
Q ss_pred HHHHHhCCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 419 MMGLTQNGRAAE----TLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 419 i~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
...+...|++++ |+..|++..+. .|+ ...+..+...+...|++++|+..+++..+. -+.+...+..+..++
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999986 89999999884 454 457888889999999999999999998864 233456777888999
Q ss_pred HhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 494 CQAGQLGKAIDITSTMP-FQPGCS-IWESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
.+.|++++|.+.++++. ..|+.. .+..+..++...|+.++|...++++++..|.+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999887 566543 344456778899999999999999999988653
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2.9e-15 Score=158.13 Aligned_cols=439 Identities=11% Similarity=0.035 Sum_probs=285.6
Q ss_pred HHHHHHHHHccCCchHHHHHHhcCCCCChh---hHHHHHHHHhcCCChhHHHHHhccCCCCCcchHH-HH--HHHHHhCC
Q 006580 53 GNRCLDLYSRFGTSDDVLQLFDEIPQKNCI---SWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWN-SM--ISGYASCG 126 (640)
Q Consensus 53 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~-~l--i~~~~~~~ 126 (640)
|...+ ...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...|+...+. .+ ...+...|
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 33333 345889999999999888763322 2337777788889999999999988876544443 33 44677789
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhcc
Q 006580 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206 (640)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 206 (640)
++++|+++|+++.+. .|.+...+..++..+...++.++|+..++.+
T Consensus 117 dyd~Aiely~kaL~~----------------------------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 117 RWDQALALWQSSLKK----------------------------------DPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred CHHHHHHHHHHHHhh----------------------------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 999999999999886 5667777778888889999999999999998
Q ss_pred CCCCeeeHHHHHHHHHh--cCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHH
Q 006580 207 EELDIISWNSLISGCFN--SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL 284 (640)
Q Consensus 207 ~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 284 (640)
...+......+..++.. .++..+|+..++++.+.. +-+...+..+..++.+.|-...|.++... .|+.++-
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~ 235 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSA 235 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCH
Confidence 85544333334444444 455556899999988753 22445567777778888887777766543 2222221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCC---hHHHHHHHHHHhhC-CCCCCh-hhH-H---HHHh
Q 006580 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF---GEVALELFQLMLRE-DIRPTE-FTL-S---CVLS 355 (640)
Q Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-~~~p~~-~t~-~---~~l~ 355 (640)
...... +.+.|.+..+....++. ....+ .+.|+.-++.+... +..|.. ..| . -.+.
T Consensus 236 ~~~~~l-----~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 236 EHYRQL-----ERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHH-----HHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 111110 11222222222111100 00112 24455555555542 222322 211 1 2223
Q ss_pred hCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC---------ChhHHHHHHHHHHhC
Q 006580 356 SIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR---------DLVSWNTIMMGLTQN 425 (640)
Q Consensus 356 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 425 (640)
++.. +....+...++.+...+.+....+-..+.++|...+.+++|..+|..+..+ +......|.-+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 3444 788888888888888776655667777888888888888888888877531 222346677788888
Q ss_pred CChHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 426 GRAAETLDVFEELLEEGL-----------PP--DRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 426 g~~~~a~~~~~~m~~~g~-----------~p--~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
+++++|..+++++.+... .| |-. .+..++..+...|++.+|++.++++.. ..+-|......+.+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~ 458 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALAS 458 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 888888888888887311 12 222 233445667778888888888888865 44566777778888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 550 (640)
.+...|.+.+|++.++... ..| +..+....+.++...+++++|..+.+.+++..|+++.
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 8888888888888887765 555 4556677777777788888888888888888887763
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.9e-15 Score=138.36 Aligned_cols=326 Identities=14% Similarity=0.120 Sum_probs=218.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHc--cCCch-HHHHHHhcCCC---CChhhHHHHHHH
Q 006580 17 YCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSR--FGTSD-DVLQLFDEIPQ---KNCISWNICLRG 90 (640)
Q Consensus 17 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~-~a~~~~~~~~~---~~~~~~~~ll~~ 90 (640)
+=++|++.- .+|.++.+.-+++.|.+.|++.++.+--.|+..-+- +.++. .-++-|-.|.. .+..+|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 445665544 478999999999999999999998887777765443 22222 22344444443 233333
Q ss_pred HhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHH
Q 006580 91 LLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSM 170 (640)
Q Consensus 91 ~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~ 170 (640)
+.|++.+ ++-+....+..+|..||.++++--..+.|.++|++..+...+.+..+|+.+|.+.. +...+.+..+|
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-~~~~K~Lv~EM 264 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-YSVGKKLVAEM 264 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-hhccHHHHHHH
Confidence 3455544 44455556778999999999999999999999999999988999999999998876 12227778888
Q ss_pred HHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHH
Q 006580 171 IRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTIS 250 (640)
Q Consensus 171 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~ 250 (640)
+... ..||..++|+++.+..+.|+++.|.+. |++++.+|++-|+.|...+|.
T Consensus 265 isqk-m~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh 316 (625)
T KOG4422|consen 265 ISQK-MTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYH 316 (625)
T ss_pred HHhh-cCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHH
Confidence 8877 777777777777777777776665543 456666777777777777777
Q ss_pred HHHHHHhccCCchHH-HHHHHHHHH----hCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---
Q 006580 251 IVINACTKLRNLDKG-KQVFALSVK----VGFL----SNSIVLSATIDLFSKCNRLEDSVRLFEQLDR--------W--- 310 (640)
Q Consensus 251 ~ll~~~~~~~~~~~a-~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~--- 310 (640)
.+|..+++.++..+. ..++.++.. ..++ .|...|..-+..|.+..+.+-|..+-.-+.. +
T Consensus 317 ~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~ 396 (625)
T KOG4422|consen 317 LIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH 396 (625)
T ss_pred HHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH
Confidence 777766666665432 222222222 1122 1334455556666666666666555443322 1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHH
Q 006580 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVV 383 (640)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 383 (640)
...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++.+... +.++-..+++..++..|...+...
T Consensus 397 ~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 397 RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 1223555666777777788888888888877777888888888887777 888888888877777664444333
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.9e-16 Score=165.54 Aligned_cols=352 Identities=11% Similarity=-0.014 Sum_probs=274.4
Q ss_pred HhcCChhHHHHHHHHhHHC--CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 006580 222 FNSGYGELALDQFYSMRYS--GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLED 299 (640)
Q Consensus 222 ~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 299 (640)
.+..+|+.-.-+|..-.++ .-.-+......++..+.+.|+++.|..+++..+.....+ ......++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 4455555544444443221 111233456667788899999999999999999886544 3444555567778999999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChh-hHHHHHhhCCC-CChHHHHHHHHHHHH
Q 006580 300 SVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF-TLSCVLSSIPI-PPVEHGSQFHSMAIK 374 (640)
Q Consensus 300 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~~l~~~~~-~~~~~a~~~~~~~~~ 374 (640)
|...|+++.. .+...|..+...+.+.|++++|...+++..+. .|+.. .+..+...+.. |+.+.|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999875 35567888899999999999999999999874 56544 44555556666 999999999998877
Q ss_pred hCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006580 375 SGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450 (640)
Q Consensus 375 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 450 (640)
.... +...+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 6533 33333333 3478899999999999987642 23344556678899999999999999999853 3345677
Q ss_pred HHHHHHHhccCCHHH----HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 006580 451 AAVLLACNYGGFVDK----GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRA 524 (640)
Q Consensus 451 ~~ll~~~~~~~~~~~----A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 524 (640)
..+...+...|++++ |...+++..+. .+.+...+..+...+.+.|++++|...+++.. ..| +...+..+...
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788889999999986 89999988863 23456788999999999999999999999987 556 56788889999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 581 (640)
+...|++++|...++++.+.+|.++..+..++.++...|++++|...+++..+...+
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999999988877777888999999999999999999876543
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.4e-15 Score=151.72 Aligned_cols=415 Identities=14% Similarity=0.055 Sum_probs=250.9
Q ss_pred chhHHHHHHHHHHHhCCCC--CchhHHHHHHHhhhcCCChHHHHHHHhccCCC--Ce--eeHHHHHHHHHhcCChhHHHH
Q 006580 159 SACHGKQIHGSMIRSGLSL--SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL--DI--ISWNSLISGCFNSGYGELALD 232 (640)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~li~~~~~~~~~~~A~~ 232 (640)
+...+..+...++... .. .-...|--+.++|...|++++|...|..-.+. |. ..+--|.+.+.+.|+.+.+..
T Consensus 285 dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred cHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 4555555555544442 10 11122444555555555555555555444421 11 222334455555555555555
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHHhccC----CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006580 233 QFYSMRYSGYSPDEYTISIVINACTKLR----NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308 (640)
Q Consensus 233 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 308 (640)
.|+..... .+-+..|..++...|+..+ ..+.|..++....+.- +.|...|..+...+...+-+ .++..|....
T Consensus 364 ~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~ 440 (1018)
T KOG2002|consen 364 CFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHH
Confidence 55555442 1122234444444444432 2333444443333332 23444555554444433222 1133332221
Q ss_pred --------CCChhhHHHHHHHHHhCCChHHHHHHHHHHhhC---CCCCCh-----hhHHHHHhhCCC--CChHHHHHHHH
Q 006580 309 --------RWDYAVINVMISTYGRYGFGEVALELFQLMLRE---DIRPTE-----FTLSCVLSSIPI--PPVEHGSQFHS 370 (640)
Q Consensus 309 --------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~-----~t~~~~l~~~~~--~~~~~a~~~~~ 370 (640)
...+...|.+...+...|++.+|...|...... ...+|. .|....+..|.. ++.+.|...+.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 234556677777777788888888888777654 223333 233334444444 77888888888
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCC
Q 006580 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPD 446 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 446 (640)
.+.+.. |.-+..|-.+..+....+...+|...++... ..++..++-+...+.+...+..|.+-|+...+. ...+|
T Consensus 521 ~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 521 SILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 777753 2222222222222223356777777777766 356667777777888888888888877776653 22356
Q ss_pred HHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 006580 447 RITLAAVLLACNY------------GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQ 512 (640)
Q Consensus 447 ~~~~~~ll~~~~~------------~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 512 (640)
..+...|.+.|.. .+..++|+++|.++.+ .-+-|...-+.+.-.++..|++.+|..+|.... ..
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 6666666665542 2356778888888776 445667777888888999999999999998886 34
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 513 PGCSIWESILRASAIYGDVKLTENVAERMMDL-QL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
.+..+|-.+...|...|++-.|+++|+...+. .+ .++.....|+.++.+.|++.+|.+.+...+...+
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 46678889999999999999999999999877 33 6788889999999999999999998888776554
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.9e-15 Score=162.97 Aligned_cols=412 Identities=11% Similarity=-0.035 Sum_probs=285.2
Q ss_pred hhhhhhcCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC---C
Q 006580 3 SYLKKAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ---K 79 (640)
Q Consensus 3 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~ 79 (640)
.|+......+.++.-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.+++++..+ .
T Consensus 3 ~~~~~~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~ 81 (765)
T PRK10049 3 SWLRQALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ 81 (765)
T ss_pred hhhhhhhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4566633455577778888888999999999999999988743 45556688899999999999999999999543 4
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006580 80 NCISWNICLRGLLKSDNLDTALKVFDEIPE--P-DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLST 156 (640)
Q Consensus 80 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 156 (640)
+...+..+...+.+.|++++|+..+++..+ | +.. +..+...+...|+.++|+..++++.+.
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------------- 145 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------------- 145 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------
Confidence 456677888888999999999999988763 3 445 788888889999999999999999886
Q ss_pred HhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC-CCe------eeHHHHHHHHH-----hc
Q 006580 157 VSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-LDI------ISWNSLISGCF-----NS 224 (640)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~-----~~ 224 (640)
.|.+...+..+...+...|..+.|+..++.... |+. .....++.... ..
T Consensus 146 -------------------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 146 -------------------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred -------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 556667777777888888888999988887775 110 01122222222 12
Q ss_pred CCh---hHHHHHHHHhHHC-CCCCCcc-hHH----HHHHHHhccCCchHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc
Q 006580 225 GYG---ELALDQFYSMRYS-GYSPDEY-TIS----IVINACTKLRNLDKGKQVFALSVKVGFL-SNSIVLSATIDLFSKC 294 (640)
Q Consensus 225 ~~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 294 (640)
+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. ....+...|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 233 6788888888753 2233332 111 1133456678899999999998887632 222 223357788889
Q ss_pred CCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHH
Q 006580 295 NRLEDSVRLFEQLDRWD-------YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQ 367 (640)
Q Consensus 295 g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~ 367 (640)
|++++|+..|+++.+.+ ...+..+..++...|++++|.+.++.+.+. .|....... ..
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~---~~---------- 350 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYG---SP---------- 350 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecC---CC----------
Confidence 99999999988875422 123555666788889999999998888764 232111000 00
Q ss_pred HHHHHHHhCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 368 FHSMAIKSGFDSN---AVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441 (640)
Q Consensus 368 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (640)
.-.|+ ...+..+...+...|++++|.++++++.. .+...+..+...+...|++++|++.+++....
T Consensus 351 --------~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 351 --------TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00222 12334566677777888888888887662 35667777777888888888888888888773
Q ss_pred CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 442 GLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 442 g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
.|+. ..+......+...|++++|..+++.+.+.
T Consensus 423 --~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 423 --EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4554 45555556677778888888888887764
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.5e-14 Score=132.66 Aligned_cols=425 Identities=14% Similarity=0.084 Sum_probs=268.0
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-----chhHH-HHHHHHHHHhCCCCCchhHHHH
Q 006580 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-----SACHG-KQIHGSMIRSGLSLSNVVLGNS 185 (640)
Q Consensus 112 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-----~~~~a-~~~~~~~~~~~~~~~~~~~~~~ 185 (640)
+.+=|.|++ ....|...++.-+|+.|...|+..+...-..+++..+ ++--+ .+-|-.|.+.| ..+..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~s--- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSS--- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--cccccc---
Confidence 445566666 4567889999999999999999888887777777666 11111 11222222222 111111
Q ss_pred HHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHH
Q 006580 186 LIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKG 265 (640)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 265 (640)
.+.|.+.+ ++-+....+..++..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-.. .
T Consensus 190 -----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 190 -----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred -----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 13444433 55566666778999999999999999999999999999889999999999998765333 3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCC
Q 006580 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRP 345 (640)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 345 (640)
.+++.+|....+.||..|+|+++.+..+.|+++.|... |++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 78999999999999999999999999999998887654 455666666666666
Q ss_pred ChhhHHHHHhhCCC-CCh-HHHHHHHHHHHHh----CC----CCchHHHHHHHHHHHhcCChHHHHHHHHhCCC------
Q 006580 346 TEFTLSCVLSSIPI-PPV-EHGSQFHSMAIKS----GF----DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK------ 409 (640)
Q Consensus 346 ~~~t~~~~l~~~~~-~~~-~~a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 409 (640)
.-.+|..+|.-+.+ ++. ..+..+...+... .+ +.+...+..-+..|.+..+.+-|.++-.-...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 66666666666655 333 3333333333321 11 22344455555666666666666555444331
Q ss_pred --C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChh
Q 006580 410 --R---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484 (640)
Q Consensus 410 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~ 484 (640)
+ ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....|.++-.-+++..++.- |...+..
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~ 469 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSD 469 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHH
Confidence 1 112344455556666666666677777766556666666666667666666666666666665553 4433333
Q ss_pred HHHHHHHHHHhcC-Ch--------H-----HHHHHHH-------hCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006580 485 HYACIIDLLCQAG-QL--------G-----KAIDITS-------TMP-FQPGCSIWESILRASAIYGDVKLTENVAERMM 542 (640)
Q Consensus 485 ~~~~l~~~~~~~g-~~--------~-----~A~~~~~-------~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 542 (640)
.-..+...+++.+ +. . -|..+++ ++. .+-....++..+-.+.+.|..++|.+++....
T Consensus 470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3333344444333 11 0 0111111 111 22345566667777778888888888888886
Q ss_pred hcC---C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 006580 543 DLQ---L--PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582 (640)
Q Consensus 543 ~~~---p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 582 (640)
..+ | |...+..-+.+.-...+..-.|..+++.|...+...
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 552 2 222233355556667788888888888887766533
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=4.3e-13 Score=129.62 Aligned_cols=539 Identities=11% Similarity=0.040 Sum_probs=383.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCC
Q 006580 29 KSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP 108 (640)
Q Consensus 29 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 108 (640)
++...|+.++....+.+ +.++..|-+-...--..|.+..|..+...-.+..+.+-..-+.+ +|....+.|..+.....
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea-iRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA-IRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH-HhcCChHHHHHHHHHHH
Confidence 57778888898888887 55666676666666778888888888776554222222222222 24445555555555444
Q ss_pred C--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHH
Q 006580 109 E--P-DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNS 185 (640)
Q Consensus 109 ~--~-~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 185 (640)
. | ++..|--.+ --..+...=.+++++.+++ -|+....--..-.+...+.|+.++...++. +|.+...|.+
T Consensus 343 r~~P~Sv~lW~kA~---dLE~~~~~K~RVlRKALe~--iP~sv~LWKaAVelE~~~darilL~rAvec--cp~s~dLwlA 415 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAA---DLESDTKNKKRVLRKALEH--IPRSVRLWKAAVELEEPEDARILLERAVEC--CPQSMDLWLA 415 (913)
T ss_pred HhCCCChhhhhhHH---hhhhHHHHHHHHHHHHHHh--CCchHHHHHHHHhccChHHHHHHHHHHHHh--ccchHHHHHH
Confidence 3 2 222222221 1122334445677777765 344433322222222555688888888888 7877777766
Q ss_pred HHHhhhcCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHH----hHHCCCCCCcchHHHHHHHHhc
Q 006580 186 LIDMYGKLGVLYYAFGVFLNME---ELDIISWNSLISGCFNSGYGELALDQFYS----MRYSGYSPDEYTISIVINACTK 258 (640)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~ 258 (640)
|. +..-++.|.++++... ..+...|-+-...--.+|+.+....++.+ +...|+..+...|..=...|-.
T Consensus 416 la----rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 416 LA----RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 54 4456777777777665 34667777766666678888888777765 4556888888888888888888
Q ss_pred cCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHH
Q 006580 259 LRNLDKGKQVFALSVKVGFLSN--SIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALE 333 (640)
Q Consensus 259 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 333 (640)
.|..-.+..+....+..|+... ..++..-...|.+.+.++-|..+|....+ .+...|...+..--..|..++...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 8998888889888888887543 35778888889999999999999888765 355677777776677788888889
Q ss_pred HHHHHhhCCCCCChh-hHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 006580 334 LFQLMLREDIRPTEF-TLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--K 409 (640)
Q Consensus 334 ~~~~m~~~~~~p~~~-t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 409 (640)
+|++.... .|... .|.......-. |++..|+.++..+.+.. +.+..++-+-+..-.....++.|..+|.+.. .
T Consensus 572 llqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 572 LLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 99988875 33332 23222222333 99999999999988876 4477778888888888999999999998877 5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 006580 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488 (640)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ 488 (640)
++...|..-+....-.++.++|++++++.++. -|+.. .|..+.+.+-+.++.+.|...|..=.+ ..+..+..|-.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWll 724 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLL 724 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHH
Confidence 77778877777777788999999999988884 56654 677777888888899999888876543 44555667777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-----------------
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP----------------- 549 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----------------- 549 (640)
|.+.-.+.|++-+|..++++.. ..| +...|-..+..-.+.|+.+.|..+..++++..|.+.
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 8888888889999999998876 344 788899999999999999999999888888776543
Q ss_pred -------------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeeE
Q 006580 550 -------------LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589 (640)
Q Consensus 550 -------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 589 (640)
.....++..+....++++|.+.|.+..+.+ ++-|..|.
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 345566777788888899999998887755 45565554
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=9.9e-16 Score=141.18 Aligned_cols=502 Identities=12% Similarity=0.073 Sum_probs=297.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHh----CCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC----CChh-hHHHHH
Q 006580 18 CSQLIDRCLSFKSFDFAKTIHGHLFKL----GFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ----KNCI-SWNICL 88 (640)
Q Consensus 18 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~ll 88 (640)
|-..|.-.-..|+-+.+.--+.+-... ++..+-.+...|..-|.......+|+..++-+.+ ||.- .--.+.
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 333444444455555544333322211 1223333444555556666666677776666654 2221 111234
Q ss_pred HHHhcCCChhHHHHHhccCCC--CC------cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHh-
Q 006580 89 RGLLKSDNLDTALKVFDEIPE--PD------VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFT-FSILLSTVS- 158 (640)
Q Consensus 89 ~~~~~~~~~~~A~~~~~~~~~--~~------~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~- 158 (640)
+.+.+.+.+.+|++.++.... |+ +...+-+...+.+.|+++.|+.-|+...+. .|+..+ ++..+.+++
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 445566666677666654331 21 122333344456677777777777766554 455433 444444444
Q ss_pred -chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHH-----HHHHHHHhcC--ChhHH
Q 006580 159 -SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWN-----SLISGCFNSG--YGELA 230 (640)
Q Consensus 159 -~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~~--~~~~A 230 (640)
+.+..++.|..++..-..+. ..- |.+..+ .|+....| ..++-.-+.+ +.+++
T Consensus 323 ~d~ekmkeaf~kli~ip~~~d-ddk-------yi~~~d------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~ 382 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEID-DDK-------YIKEKD------------DPDDNLLNEAIKNDHLKNMEKENKADAEKA 382 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCC-ccc-------ccCCcC------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 66666666666665431211 110 111100 11111111 1111111111 12223
Q ss_pred HHHHHHhHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006580 231 LDQFYSMRYSGYSPDEY-TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309 (640)
Q Consensus 231 ~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 309 (640)
+-.--+++.--+.||-. .+..-+..+-.+...+.|.++ + ..-...|.+.|+++.|+++++-..+
T Consensus 383 i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--e-------------i~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 383 IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--E-------------INKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--h-------------hhHHHHHHhccCHHHHHHHHHHHHh
Confidence 22222333222333322 122222222222222222211 0 1122357788999999998888877
Q ss_pred CChhhHHHHHH-----HHHh-CCChHHHHHHHHHHhhCCCCCChhhHHHHH----hhCCCCChHHHHHHHHHHHHhCCCC
Q 006580 310 WDYAVINVMIS-----TYGR-YGFGEVALELFQLMLREDIRPTEFTLSCVL----SSIPIPPVEHGSQFHSMAIKSGFDS 379 (640)
Q Consensus 310 ~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l----~~~~~~~~~~a~~~~~~~~~~~~~~ 379 (640)
.|..+-++... -|.+ ..++..|.+.-+..... |.+.-..+. .++..|++++|...+.+.....-..
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 66554333222 2222 23455555544443322 111111111 1234499999999999998776555
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
....|| +.-.+-..|++++|++.|-++. ..++.....+...|-...++.+|++++-+..+. ++.|+..+.-|...
T Consensus 524 ~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 555555 3345677899999999998775 567777888888999999999999999887764 55567788889999
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-HcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASA-IYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~a 534 (640)
|-+.|+-.+|.+.+-.--+ -++-+..+..-|..-|....-+++|+.+|++.. +.|+..-|..++..|. +.|++.+|
T Consensus 602 ydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999998765433 456678888889999999999999999999987 8999999999998885 58999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
.++|+......|.+..+..-|..++...|.
T Consensus 680 ~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 680 FDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999998887774
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=8.7e-14 Score=147.11 Aligned_cols=434 Identities=9% Similarity=0.010 Sum_probs=313.3
Q ss_pred HHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChh-hHHHH--HHHHhcCCChhH
Q 006580 23 DRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCI-SWNIC--LRGLLKSDNLDT 99 (640)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--l~~~~~~~~~~~ 99 (640)
-...+.|++..|...+++..+....-.+.++ .++..+...|+.++|...+++...|+.. .+..+ ...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3446789999999999999987622223444 8888899999999999999999876444 34444 457778899999
Q ss_pred HHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHHHHHHHHHHh
Q 006580 100 ALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRS 173 (640)
Q Consensus 100 A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~~~~~~~~~~ 173 (640)
|+++|+++.+ .++..+..++..+...++.++|++.++++... .|+...+..+..... +...|.+.++++++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999884 34566778888999999999999999999875 566666644433332 454699999999999
Q ss_pred CCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCC-CeeeH----HHHHHHHH---------hcCC---hhHHHHHHHH
Q 006580 174 GLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-DIISW----NSLISGCF---------NSGY---GELALDQFYS 236 (640)
Q Consensus 174 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~----~~li~~~~---------~~~~---~~~A~~~~~~ 236 (640)
.|.+...+..++..+.+.|-...|.++...-+.- +...+ ...+.-.+ ...+ .+.|+.-++.
T Consensus 199 --~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 --APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 7889999999999999999999999998875521 00000 00111111 1122 2445556666
Q ss_pred hHHC-CCCCCcch-----HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 006580 237 MRYS-GYSPDEYT-----ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW 310 (640)
Q Consensus 237 m~~~-g~~p~~~t-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 310 (640)
+... +-.|.... ..-.+-++...++..++.+.++.+...|.+....+..++.++|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5542 22243222 22345577888999999999999999887767778899999999999999999999988542
Q ss_pred ---------ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCc
Q 006580 311 ---------DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT-EFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN 380 (640)
Q Consensus 311 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 380 (640)
+......|.-+|...+++++|..+++.+.+. .|. ...| ..-.+ ...||
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----~~~~~----------------~pn~d 414 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY----GLPGK----------------EPNDD 414 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc----CCCCC----------------CCCcc
Confidence 2223467889999999999999999999873 331 0001 00000 00122
Q ss_pred -hHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 006580 381 -AVVASSLMEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLL 455 (640)
Q Consensus 381 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 455 (640)
...+..++..+...|++.+|++.++++.. | |......+...+...|.+.+|++.++..... .|+. .+......
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHH
Confidence 12334566778889999999999999872 3 7788888899999999999999999777663 5654 46677778
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ 488 (640)
++...+++++|..+.+.+.+. .|+......
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~---~Pe~~~~~~ 522 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISR---SPEDIPSQE 522 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhh---CCCchhHHH
Confidence 888889999999999888764 454443333
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=3.7e-13 Score=135.32 Aligned_cols=564 Identities=12% Similarity=0.038 Sum_probs=309.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcC---CCCChhhHHHHHHHHh
Q 006580 16 SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEI---PQKNCISWNICLRGLL 92 (640)
Q Consensus 16 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~ 92 (640)
........-....|++++|..++.++++.. +.....|-+|..+|-..|+.+++...+-.. ...|..-|-.+-....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333344444455599999999999999997 777888999999999999999998766543 3456678999999999
Q ss_pred cCCChhHHHHHhccCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-------chhH
Q 006580 93 KSDNLDTALKVFDEIPEP---DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-------SACH 162 (640)
Q Consensus 93 ~~~~~~~A~~~~~~~~~~---~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~ 162 (640)
+.|+++.|.-+|.+..+. +...+--=+..|-+.|+...|...|.++.+...+.|..-+..++.... ..+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999998753 333344455678899999999999999998644334444444444433 4467
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC----C----------------------CeeeHH-
Q 006580 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE----L----------------------DIISWN- 215 (640)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~- 215 (640)
|.+.++.....+....+...++.++..+.+...++.|......+.. + +..+|+
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 7777777776544566777888888888888888888776655432 1 111111
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHhHHCCCCC--CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006580 216 ---SLISGCFNSGYGELALDQFYSMRYSGYSP--DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290 (640)
Q Consensus 216 ---~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (640)
-+.-++......+....+.....+..+.| +...|.-+..++...|++..|..++..+......-+..+|-.+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 11222233333333333333333333222 2334555566666666666666666666555444445566666666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHhhC--------CCCCChhhHHHHHhhCCC
Q 006580 291 FSKCNRLEDSVRLFEQLDRWDY---AVINVMISTYGRYGFGEVALELFQLMLRE--------DIRPTEFTLSCVLSSIPI 359 (640)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~~t~~~~l~~~~~ 359 (640)
|...|..+.|.+.|+.+..-++ ..--.|...+-+.|+.++|++.+..+... +..|+..........+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 6666666666666666554222 22333444555666666666666554311 112222221112222222
Q ss_pred -CChHHHHHHHHHHHHhC----------------------CCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--------
Q 006580 360 -PPVEHGSQFHSMAIKSG----------------------FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-------- 408 (640)
Q Consensus 360 -~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 408 (640)
|+.++-..+...++... .+........++.+-.+.++......-...-.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 33333222222221100 00111111122222222222111111110000
Q ss_pred CCCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCH-H-HH-HHHHHHHhccCCHHHHHHHHHHhHHhhCC
Q 006580 409 KRDL----VSWNTIMMGLTQNGRAAETLDVFEELLEEGL--PPDR-I-TL-AAVLLACNYGGFVDKGMLVFSAMKEEYGV 479 (640)
Q Consensus 409 ~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~-~-~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 479 (640)
.-+. ..+.-++.++++.+++++|+.+...+....+ .++. . .+ ...+.+++..+++..|...++.|...++.
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 0011 1223334445555555555555554444221 1111 0 11 12233344455555555555555443222
Q ss_pred CCCh---hHHH-----------------------------------HHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHH
Q 006580 480 MPGE---EHYA-----------------------------------CIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWES 520 (640)
Q Consensus 480 ~p~~---~~~~-----------------------------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 520 (640)
..++ ..|+ .....+..++.+.-|+..+-++. ..||.+..+.
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 2111 1122 11122344566677776655543 4555444443
Q ss_pred HHHH-H----------HHcCChHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 521 ILRA-S----------AIYGDVKLTENVAERMMDLQLP--SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 521 l~~~-~----------~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
++.. + .++-..-.+..++.+..++... ...++.+++.+|...|-..-|..++++..+..+
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 3322 1 1222456677888887777554 678899999999999999999999999987643
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=2.7e-14 Score=142.47 Aligned_cols=519 Identities=10% Similarity=0.012 Sum_probs=277.0
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC----CChhhHHHHHHHHhcCCChhHHHHHhccCCCCC
Q 006580 36 TIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ----KNCISWNICLRGLLKSDNLDTALKVFDEIPEPD 111 (640)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 111 (640)
.++..+...|+.|+..+|..++.-|+..|+.+.|- +|.-|.- -+...|+.++.+..++++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34555666666777777777777777777766666 6665543 23345666666666666665544 566
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHh--c--------hhHHHHHHHHHHHh
Q 006580 112 VVSWNSMISGYASCGYSDYALEMFSK-MQ-------LQGVRPSGFTFSILLSTVS--S--------ACHGKQIHGSMIRS 173 (640)
Q Consensus 112 ~~~y~~li~~~~~~~~~~~a~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~--~--------~~~a~~~~~~~~~~ 173 (640)
..+|..|..+|.+.||... ++..++ |. ..|+.....-|-..+.++. . ..--+.++..+++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777766544 222222 21 1232222222222222222 0 01111222233333
Q ss_pred CCCCCchhHHHH---HHHhhhc-CCChHHHHHHHhccC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcch
Q 006580 174 GLSLSNVVLGNS---LIDMYGK-LGVLYYAFGVFLNME-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248 (640)
Q Consensus 174 ~~~~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 248 (640)
+...|...-++. .++-... ...+++-........ .++..+|..++.+-.-+|+.+.|..++.+|++.|++.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 211111100000 1221111 122333333333443 37889999999999999999999999999999999999988
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCC-
Q 006580 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF- 327 (640)
Q Consensus 249 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~- 327 (640)
|..++-+ .++...++.++.-|.+.|+.|+..|+..-+..+...|....+.+..+.-..-....+..+.++.....+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8887766 888899999999999999999999998877777775553322221111000111122233222111111
Q ss_pred ----hHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCChHHH
Q 006580 328 ----GEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF---DSNAVVASSLMEMYAKTGSIDSS 400 (640)
Q Consensus 328 ----~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 400 (640)
..-....+++..-.|+.-....|........+|.-+...++...+..--. +.++..+..+ +
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------l 386 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------L 386 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------H
Confidence 11112222222222332222333333322222444444444444432111 1112222222 2
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHh---CC------------ChHHHHHHHHHHHH----CCCCC-------CHHHHHHHH
Q 006580 401 TEIFVKLDKRDLVSWNTIMMGLTQ---NG------------RAAETLDVFEELLE----EGLPP-------DRITLAAVL 454 (640)
Q Consensus 401 ~~~~~~~~~~~~~~~~~li~~~~~---~g------------~~~~a~~~~~~m~~----~g~~p-------~~~~~~~ll 454 (640)
...|.+...+....-.-.-++... .. +...+..-+..+.. +...| -...-+.++
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 333333332211111001111111 11 11111111111111 00111 111234455
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcC
Q 006580 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-----FQPGCSIWESILRASAIYG 529 (640)
Q Consensus 455 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 529 (640)
..|++.-+..++...-+..... -+ ...|..||+.++...+.+.|..+.++.. +..|..-+..+.....+.+
T Consensus 467 l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 5555555555555444433332 22 2678999999999999999999999886 3335556778888889999
Q ss_pred ChHHHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 006580 530 DVKLTENVAERMMDL---QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 582 (640)
....+..+++++.+. .|.-......+.......|+.+...+..+-+...|+.-
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999999999988875 23334566677777888999999999999998888755
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=1.9e-11 Score=118.58 Aligned_cols=367 Identities=12% Similarity=0.026 Sum_probs=283.7
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006580 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292 (640)
Q Consensus 213 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (640)
+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+....+++.+...- +.....+.....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 5555666666777777777777777652 22334455555555566788888888888887763 334556666677777
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHH
Q 006580 293 KCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQF 368 (640)
Q Consensus 293 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~ 368 (640)
..|++..|..++...-+ .+...|-+-+..-..+.+++.|..+|.+... ..|+...|..-...... +..++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 88999999988887754 3556788888888889999999999988776 45666666555554444 888999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006580 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 445 (640)
++..++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|.+-.|..++++.+-.+ +-
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 8887775 355567788888889999999999988877663 3 45678777777778889999999999988764 44
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006580 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525 (640)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 525 (640)
+...|...++.=.+.|+.++|..++.+..+ ..+.+...|..-|.+..+.++-.++...+++.. -|+..+......+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 567888889998999999999999888887 556667778888888888888777777777764 5666677778888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeeEEe
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGI 591 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 591 (640)
....+++.|.+.|.+++..+|++..+|..+-..+...|.-++-.+++.+..... |.-|..|+.+
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 888999999999999999999999999999999999999999999999887754 4556667654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=6e-16 Score=147.11 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=112.4
Q ss_pred HHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC--CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChH
Q 006580 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI--PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398 (640)
Q Consensus 321 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 398 (640)
.+.+.|++++|++++++.......|+...|-.++..++. ++.+.|...++.+...+ +.++..+..++.. ...++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccc
Confidence 344444455555554333322223444444444433333 55555555555555443 2244555666666 6788888
Q ss_pred HHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 399 SSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 399 ~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
+|.+++...- .++...+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|++.+++..+
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887664 3566777788888999999999999999987632 345666777888888999999999999999886
Q ss_pred hhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 006580 476 EYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552 (640)
Q Consensus 476 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 552 (640)
. .| +......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+.+|+|+...
T Consensus 175 ~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 L---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp H----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred c---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 4 45 47778889999999999999888887765 345677889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
..++.++...|+.++|..+.+++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999887653
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=2.3e-11 Score=122.71 Aligned_cols=516 Identities=12% Similarity=0.083 Sum_probs=349.1
Q ss_pred HHHHccCCchHHHHHHhcCCC---CChhhHHHHHHHHhcCCChhHHHHHhcc---CCCCCcchHHHHHHHHHhCCChHHH
Q 006580 58 DLYSRFGTSDDVLQLFDEIPQ---KNCISWNICLRGLLKSDNLDTALKVFDE---IPEPDVVSWNSMISGYASCGYSDYA 131 (640)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~y~~li~~~~~~~~~~~a 131 (640)
+.+...|+.++|.+++.++.. .+...|..|...|-+.|+.+++...+-. +.+.|...|..+.....+.|+++.|
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 334455999999999999876 4567899999999999999999987643 3356778899999999999999999
Q ss_pred HHHHHHHHHCCCCCChhh----HHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHH----HHHHhhhcCCChHHHHHHH
Q 006580 132 LEMFSKMQLQGVRPSGFT----FSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGN----SLIDMYGKLGVLYYAFGVF 203 (640)
Q Consensus 132 ~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~ 203 (640)
.-+|.+..+. .|+..- ...+..-.++...|..-+.++.... .|.|..-.. ..+..+...++-+.|.+.+
T Consensus 227 ~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999886 344322 2333333347788888888888884 233333333 3355667777778898888
Q ss_pred hccCC-----CCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCC---------------------------CCCcchHHH
Q 006580 204 LNMEE-----LDIISWNSLISGCFNSGYGELALDQFYSMRYSGY---------------------------SPDEYTISI 251 (640)
Q Consensus 204 ~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---------------------------~p~~~t~~~ 251 (640)
+.... -+...++.++..+.+...++.|......+..... .++... .-
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 87763 2445688999999999999999999988876211 122222 12
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhC
Q 006580 252 VINACTKLRNLDKGKQVFALSVKVGFL--SNSIVLSATIDLFSKCNRLEDSVRLFEQLDR----WDYAVINVMISTYGRY 325 (640)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 325 (640)
+.-++......+..+.+...+.+.... -+...|.-+..+|...|++..|+.+|..+.. .+...|--+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 334555666777777777777777643 4566889999999999999999999999875 3567899999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC--CChHHHHHHHHHH--------HHhCCCCchHHHHHHHHHHHhcC
Q 006580 326 GFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI--PPVEHGSQFHSMA--------IKSGFDSNAVVASSLMEMYAKTG 395 (640)
Q Consensus 326 ~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~~~a~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g 395 (640)
|.++.|.+.|..... ..|+..-...-|..+.. |+.++|.+.+..+ ...+++|.........+.+.+.|
T Consensus 463 ~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999987 46766555555555444 9999999888874 34456677777666777888888
Q ss_pred ChHHHHHHHHhCCC---------C-----------------ChhHHHHHHHHHHhCCChHHHHHH------HHHHHHCCC
Q 006580 396 SIDSSTEIFVKLDK---------R-----------------DLVSWNTIMMGLTQNGRAAETLDV------FEELLEEGL 443 (640)
Q Consensus 396 ~~~~A~~~~~~~~~---------~-----------------~~~~~~~li~~~~~~g~~~~a~~~------~~~m~~~g~ 443 (640)
+.++-..+-..|.. | .......++.+-.+.++.....+- +.--...|+
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 87775544443331 0 111122222333333332111111 111111233
Q ss_pred CCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhCC-C-----
Q 006580 444 PPDRI--TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE----HYACIIDLLCQAGQLGKAIDITSTMP-F----- 511 (640)
Q Consensus 444 ~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~-~----- 511 (640)
..+.. .+.-++.++++.+.+++|..+...+....-+..+.. .-...+.+....+++..|.+.++.+. .
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 33332 455666778888888888888887776533333333 22344556677888888888888776 1
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 512 QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS-PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 512 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.| -...|+..++...+.++-..-.+....+....|.+ +..+...+..+...+.|..|+..+-+.....
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 23 23456656666666666666666666655556655 5555555666677888888888666655544
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.3e-13 Score=127.36 Aligned_cols=426 Identities=14% Similarity=0.104 Sum_probs=286.4
Q ss_pred hhHHHHHHHHh------chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC--CC------eee
Q 006580 148 FTFSILLSTVS------SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LD------IIS 213 (640)
Q Consensus 148 ~t~~~ll~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~ 213 (640)
.||+.+..... ...+|...++-+++...+|..-..--.+.+.+.+...+.+|+++++.... |+ +..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 45665554443 34556666666777664554445555667788888999999998876542 21 223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc------------h
Q 006580 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSN------------S 281 (640)
Q Consensus 214 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~ 281 (640)
.+.+--.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|+.....|| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 445555678899999999999998774 48888777777777888999999999999987643332 2
Q ss_pred hHHHHHH-----HHHHhcC--CHHHHHHHHHhcC----CCChhh---HH----------H--------HHHHHHhCCChH
Q 006580 282 IVLSATI-----DLFSKCN--RLEDSVRLFEQLD----RWDYAV---IN----------V--------MISTYGRYGFGE 329 (640)
Q Consensus 282 ~~~~~l~-----~~~~~~g--~~~~A~~~~~~~~----~~~~~~---~~----------~--------li~~~~~~~~~~ 329 (640)
...+.-+ .-+-+.+ +.++++-.--++. .++-.. |. . -...+.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222221 1111211 1222221111221 222110 11 0 123578999999
Q ss_pred HHHHHHHHHhhCCCCCChh--hHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 330 VALELFQLMLREDIRPTEF--TLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406 (640)
Q Consensus 330 ~a~~~~~~m~~~~~~p~~~--t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 406 (640)
.|+++++-+.+..-+.-.. +-..++..+.. .++..|.++-+...... .-++.....-.+.....|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999999887654332222 22233333333 57777777776665433 12222222222233457999999999999
Q ss_pred CCCCChhHHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh
Q 006580 407 LDKRDLVSWNTIMM---GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483 (640)
Q Consensus 407 ~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 483 (640)
....|..+-.+|.. .+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++..... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 99777665444433 466789999999999888763 344556777788889899999999999987764 566678
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITST-MP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
...+.|.+.|-+.|+-.+|.+..-+ .. ++-+..+..=|...|....=+++++.+++++.-+.|.-..--..++.++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 8999999999999999999987544 44 455888888888888888889999999999988888654444455566678
Q ss_pred cCChHHHHHHHHHHHhCC
Q 006580 562 RGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~ 579 (640)
.|++.+|..+++....+-
T Consensus 673 sgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 899999999999887653
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.7e-11 Score=114.93 Aligned_cols=212 Identities=16% Similarity=0.139 Sum_probs=173.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFE 436 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (640)
|+.-.+..-++.+++....++ ..|--+..+|....+.++-...|++.. ..++.+|..-.+.+.-.+++++|..=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887653333 236667778999999999999998877 3467788888888888899999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC
Q 006580 437 ELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG 514 (640)
Q Consensus 437 ~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 514 (640)
+.++ +.|+. ..|..+.-+..+.+++++++..|++.++ .++-.++.|+.....+...+++++|.+.|+.+. ..|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9998 45654 5777777777889999999999999988 566678889999999999999999999999876 4443
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 515 ---------CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 515 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
+.+.-.++..- -.+++..|+.+++++++++|....+|..|+..-.++|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22223333222 348999999999999999999999999999999999999999999987653
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=6.3e-11 Score=118.96 Aligned_cols=471 Identities=8% Similarity=-0.016 Sum_probs=242.6
Q ss_pred CCCChhhHHHHHHHHhcCCChhHHHHHhccCCC----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006580 77 PQKNCISWNICLRGLLKSDNLDTALKVFDEIPE----PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152 (640)
Q Consensus 77 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 152 (640)
..||.+||..+|.-||..|+++.|- +|.-|.- -+...++.++.+..+.++.+.+. .|...||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4589999999999999999999999 8888774 34567899999999999888776 788899999
Q ss_pred HHHHHh---c---hhHHHHHHHHHHHh----CC-------------CCCchhHHHHHHHhhhcCCChHHHHHHHhccCCC
Q 006580 153 LLSTVS---S---ACHGKQIHGSMIRS----GL-------------SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL 209 (640)
Q Consensus 153 ll~~~~---~---~~~a~~~~~~~~~~----~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 209 (640)
++.++. + ++...+-+.....+ |. .|.......+.+......|.++.+++++..++..
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999998 2 33333322222111 10 1111112223344444455556666666555521
Q ss_pred --CeeeHHHHHHHHHhcCC-hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 006580 210 --DIISWNSLISGCFNSGY-GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSA 286 (640)
Q Consensus 210 --~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 286 (640)
+. ..-.+++-+..... +++-....+...+ .|++.+|..++.+....|+.+.|..++.+|.+.|++.+..-|-.
T Consensus 169 a~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 169 AWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 11 11112332222222 1222222222222 47777777777777777777777777777777777766665555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCC--
Q 006580 287 TIDLFSKCNRLEDSVRLFEQLDR----WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIP-- 360 (640)
Q Consensus 287 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~-- 360 (640)
|+-+ .++...+..+++.|.+ |+..|+..-+..+..+|.... .+.|.+.+...-..+..+.++|
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~--------~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY--------GEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh--------cccccchhhhhhHHHHHHHhcccH
Confidence 5444 4555555555554432 455555554444444333111 1111121111111222222223
Q ss_pred ---ChHHH--HH---HHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC-------ChhHHHHHHHHHHhC
Q 006580 361 ---PVEHG--SQ---FHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-------DLVSWNTIMMGLTQN 425 (640)
Q Consensus 361 ---~~~~a--~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~ 425 (640)
.++.- .. .+....-.|+.....++...++ ....|.-+...++-..+..| ++..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 01000 00 0011111233323333332222 22356666666666655532 344455555444433
Q ss_pred CChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---hCCCC-------ChhHHHHHHHHH
Q 006580 426 GRAAETLDVFE--ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE---YGVMP-------GEEHYACIIDLL 493 (640)
Q Consensus 426 g~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~p-------~~~~~~~l~~~~ 493 (640)
-+..-...++. +..+.. .+....-.+.....+ -+...+.+-+..+... ....| -...-+.++..+
T Consensus 393 ~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLN--LNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 22111111111 111110 000000001110000 0111111111111110 01111 122344566667
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 006580 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL---PSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
++.-+..+++..-++.....-...|..|+.-+..++..+.|...+++....+. -+..-+..+.+.+.+.+...++.+
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 77777777765554443111227789999999999999999999999876643 344567889999999999999999
Q ss_pred HHHHHHhC
Q 006580 571 VKKVMRKN 578 (640)
Q Consensus 571 ~~~~m~~~ 578 (640)
+++++.+.
T Consensus 550 iL~e~ks~ 557 (1088)
T KOG4318|consen 550 ILYEDKSS 557 (1088)
T ss_pred HHhhhhHH
Confidence 99999873
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.1e-09 Score=102.61 Aligned_cols=489 Identities=11% Similarity=0.077 Sum_probs=348.5
Q ss_pred ChhhHHHHHHHHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh--hhHHHHH
Q 006580 80 NCISWNICLRGLLKSDNLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG--FTFSILL 154 (640)
Q Consensus 80 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll 154 (640)
+...|-...+.=...+++..|..+|+.... .+...|-.-+..-.++..+..|..+++.....-...|. .-|..+=
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555555666667788888888888775 45566666777777888888899998888764222233 3355555
Q ss_pred HHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccC--CCCeeeHHHHHHHHHhcCChhHHHH
Q 006580 155 STVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME--ELDIISWNSLISGCFNSGYGELALD 232 (640)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~ 232 (640)
..+.++..|+++|+...+. .|+...|++.|+.-.+-..++.|..+++... .|++.+|-...+.--+.|+...|..
T Consensus 152 E~LgNi~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHhcccHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 5666888999999988874 6899999999999999999999999999876 7899899888888889999999999
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHH----hccCCchHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH---
Q 006580 233 QFYSMRYSGYSPDEYTISIVINAC----TKLRNLDKGKQVFALSVKVGFLS-NSIVLSATIDLFSKCNRLEDSVRLF--- 304 (640)
Q Consensus 233 ~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--- 304 (640)
+|....+. -.|...-..+..++ .+...++.|.-+|+..++.-... ....|..+...--+-|+.....+..
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99888763 12333333333333 45677888999999888763222 1446666666666667755444332
Q ss_pred -----HhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCCh-------hhHHHHHhhC---CC-CChHHH
Q 006580 305 -----EQLDRW---DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTE-------FTLSCVLSSI---PI-PPVEHG 365 (640)
Q Consensus 305 -----~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~t~~~~l~~~---~~-~~~~~a 365 (640)
+.+... |-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+--+| .. .+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222232 4456777777778889999999999998875 44421 1222122222 22 799999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHH----HhcCChHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 366 SQFHSMAIKSGFDSNAVVASSLMEMY----AKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439 (640)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (640)
.++++..++ -+|....++.-+--+| .++.++..|.+++.... .|-..+|-..|..-.+.++++.+..++++.+
T Consensus 386 r~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988 4566677776665555 46789999999998876 5778888888888889999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHH
Q 006580 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIW 518 (640)
Q Consensus 440 ~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 518 (640)
+-+ +.|..++......=...|+.+.|..+|.-..+...+......|.+.|+--...|.+++|..+++++. ..+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 953 3455688777777778899999999999988763333345567778888889999999999999987 55666788
Q ss_pred HHHHHHHH-----HcC-----------ChHHHHHHHHHHHhc----CCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 519 ESILRASA-----IYG-----------DVKLTENVAERMMDL----QLPSP--LPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 519 ~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
-++...-. +.+ +...|..+|+++... +|... .......+.=...|...+...+-.+|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 77765443 233 567888888888765 33221 122222333344566666666655553
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=2.2e-11 Score=121.20 Aligned_cols=284 Identities=10% Similarity=0.021 Sum_probs=176.6
Q ss_pred cCChhHHHHHHHHhHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHH
Q 006580 224 SGYGELALDQFYSMRYSGYSPDEYT-ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL--SATIDLFSKCNRLEDS 300 (640)
Q Consensus 224 ~~~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 300 (640)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.+.+.+..+.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 578888877776654431 12222 333344446788888888888888765 3444322 2346678888888888
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCC
Q 006580 301 VRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF 377 (640)
Q Consensus 301 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 377 (640)
...++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 888888765 35567778888899999999999999998887543221 110000
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 454 (640)
...+..++.......+.+...++++.+. ..++.....+...+...|+.++|.+++++..+. +|+... .++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 0011222222333344556666666665 246667777777788888888888888777763 444422 123
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHH
Q 006580 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 455 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 533 (640)
.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+... ..|+...+..+...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334557777777777777653 23344456666666666666666666666665 55666666666666666666666
Q ss_pred HHHHHHHHHhc
Q 006580 534 TENVAERMMDL 544 (640)
Q Consensus 534 a~~~~~~~~~~ 544 (640)
|.+++++.+.+
T Consensus 380 A~~~~~~~l~~ 390 (398)
T PRK10747 380 AAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.1e-12 Score=126.02 Aligned_cols=277 Identities=12% Similarity=0.044 Sum_probs=210.9
Q ss_pred CHHHHHHHHHhcCC--CCh-hhHHHHHHHHHhCCChHHHHHHHHHHhhCC--CCCChhhHHHHHhhCCCCChHHHHHHHH
Q 006580 296 RLEDSVRLFEQLDR--WDY-AVINVMISTYGRYGFGEVALELFQLMLRED--IRPTEFTLSCVLSSIPIPPVEHGSQFHS 370 (640)
Q Consensus 296 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~~l~~~~~~~~~~a~~~~~ 370 (640)
+..+|...|..++. .|. .+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.|..+.. +.+...+.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHHH
Confidence 35667777777554 232 334556677888888888888888777642 11234455555554422 11222222
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006580 371 MAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR 447 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 447 (640)
+-.-.--+..+.+|.++.++|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|+..|+..+. +.|..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRH 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchh
Confidence 2222223667889999999999999999999999998853 556888888888889999999999999875 44544
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 006580 448 -ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILR 523 (640)
Q Consensus 448 -~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 523 (640)
.+|-.+...|.+.++++.|.-.|++.. .+.| +......+...+.+.|+.++|+.+++++. ..| |+..--.-+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 366667788999999999999999887 4455 45677788889999999999999999987 444 6666666667
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
.+...+++++|+..++++.+.-|++...|..++.+|.+.|+.+.|+.-|..+.+...
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 777889999999999999999999999999999999999999999999988877654
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1.2e-08 Score=99.51 Aligned_cols=509 Identities=12% Similarity=0.133 Sum_probs=286.9
Q ss_pred HHhhcCCChHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHH
Q 006580 23 DRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL 101 (640)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 101 (640)
....+++++...+..|+..+..- +..+..+|...+......+-++.+.+++++..+-++..-+-.|..+++.+++++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 34446677777777777776542 44455668888887777788888888888888877777888888888888888888
Q ss_pred HHhccCCC----------------------------------------------CCc--chHHHHHHHHHhCCChHHHHH
Q 006580 102 KVFDEIPE----------------------------------------------PDV--VSWNSMISGYASCGYSDYALE 133 (640)
Q Consensus 102 ~~~~~~~~----------------------------------------------~~~--~~y~~li~~~~~~~~~~~a~~ 133 (640)
+.+..... +|. ..|.+|..-|.+.|.+++|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 88776540 111 238889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhchhHH--HHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC---
Q 006580 134 MFSKMQLQGVRPSGFTFSILLSTVSSACHG--KQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--- 208 (640)
Q Consensus 134 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 208 (640)
+|++.... ..+..-|..++.+++.+++- ....+...+.+.-+.+.. +++-.+.-|+.+..
T Consensus 270 vyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 270 VYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV-------------DLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh-------------hHHHHHHHHHHHHhccc
Confidence 99998765 23445566666666622211 111110111110111111 22223333333332
Q ss_pred ------------CCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc------chHHHHHHHHhccCCchHHHHHHH
Q 006580 209 ------------LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE------YTISIVINACTKLRNLDKGKQVFA 270 (640)
Q Consensus 209 ------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~ 270 (640)
.++..|..-+. +..|+..+-...+.+.... +.|.. ..|..+.+.|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 12333333322 2346666666677666542 33321 135555666667777777777777
Q ss_pred HHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCC
Q 006580 271 LSVKVGFLSN---SIVLSATIDLFSKCNRLEDSVRLFEQLDR-WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPT 346 (640)
Q Consensus 271 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 346 (640)
...+..++-- ..+|..-..+-.+..+++.|+++.+.... |.... ..+...+.+-.+ .+++ +
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~-rlhr---------S 476 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQA-RLHR---------S 476 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHH-HHHH---------h
Confidence 6665543211 22344444444455556666665554432 11000 011111110000 0000 1
Q ss_pred hhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----CCh-hHHHHHHH
Q 006580 347 EFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK----RDL-VSWNTIMM 420 (640)
Q Consensus 347 ~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~ 420 (640)
...|...+...-. |-++..+.+++.+++..+.....+ ....-.+-...-++++.+++++-.. |++ ..|+..+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 1122233333333 666777777777777664322222 2223334455668889999987662 444 36777666
Q ss_pred HHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHH
Q 006580 421 GLTQ---NGRAAETLDVFEELLEEGLPPDRITLAAVLLA--CNYGGFVDKGMLVFSAMKEEYGVMPG--EEHYACIIDLL 493 (640)
Q Consensus 421 ~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 493 (640)
-+.+ ..+.+.|..+|++.++ |++|...-+..|+-+ =-+.|....|++++++... ++.+. ..+|+..|.--
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 5544 2468899999999998 678776544444433 2345888889999998765 45443 34566666433
Q ss_pred HhcCChHHHHHHHHhCC-CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhc-CC-CChhHHHHHHHHHHhcCChHH
Q 006580 494 CQAGQLGKAIDITSTMP-FQPGCSIW---ESILRASAIYGDVKLTENVAERMMDL-QL-PSPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~ 567 (640)
...=-+.....+++++. .-|+...- --+...-.+.|..+.|..+|....+. +| -++..|.+.-..=.+.|+-+-
T Consensus 633 ae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 32222223333444433 23433322 22334446778899999999888888 44 455667777777778888443
Q ss_pred H
Q 006580 568 I 568 (640)
Q Consensus 568 a 568 (640)
.
T Consensus 713 ~ 713 (835)
T KOG2047|consen 713 Y 713 (835)
T ss_pred H
Confidence 3
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.1e-10 Score=107.17 Aligned_cols=355 Identities=10% Similarity=0.068 Sum_probs=243.4
Q ss_pred CCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchH--HHHHH
Q 006580 177 LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI--SIVIN 254 (640)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~ 254 (640)
..|...+-.....+-+.|....|.+.|......-+..|.+.+....-..+.+.+..+.. |...|..-+ -.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHH
Confidence 33444444445556677888888888877776556666666554433333333322221 222221111 12334
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHhCCCh
Q 006580 255 ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWD------YAVINVMISTYGRYGFG 328 (640)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~ 328 (640)
++....+.+.+.+-.+.....|++.+...-+....+.....++++|+.+|+++.+.| ..+|+.++- .++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 555556777777777777777777666666666666677777888888887776643 334444332 222111
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408 (640)
Q Consensus 329 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 408 (640)
.- . ++.+-...--+-.+.+...+.+.|+-.++.++|...|++..
T Consensus 314 kL--s----------------------------------~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 314 KL--S----------------------------------YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HH--H----------------------------------HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 10 0 00000000012334455667788888899999999999887
Q ss_pred CC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhH
Q 006580 409 KR---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH 485 (640)
Q Consensus 409 ~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~ 485 (640)
+- ....|+.+.+-|...++...|++.+++..+-+ +.|...|-.|.++|.-.+...-|+-+|++..+ --+.|...
T Consensus 358 kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRl 434 (559)
T KOG1155|consen 358 KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRL 434 (559)
T ss_pred hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHH
Confidence 43 45689999999999999999999999999842 45678999999999999999999999998875 34556889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCChhHHHHHH
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDL-------QLPSPLPYSLLT 556 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~ 556 (640)
|.+|.++|.+.++.++|++-|.... ...+...+..|...|-+.++.++|...+++-++. +|....+..-|+
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA 514 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLA 514 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 9999999999999999999999887 3345688999999999999999999999999874 333344445578
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 006580 557 QAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 557 ~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.-+.+.+++++|..+......
T Consensus 515 ~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 515 EYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHhhcchHHHHHHHHHHhc
Confidence 888899999999987765543
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=6.3e-11 Score=118.68 Aligned_cols=290 Identities=11% Similarity=0.032 Sum_probs=165.6
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 006580 222 FNSGYGELALDQFYSMRYSGYSPDEYT-ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300 (640)
Q Consensus 222 ~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 300 (640)
...|+++.|.+.+.+..+. .|+... +.....+..+.|+.+.+.+.+..+.+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3568888888888776553 354433 3344556677788888888888877654222233444457788888888888
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCC
Q 006580 301 VRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGF 377 (640)
Q Consensus 301 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 377 (640)
...++.+.+ .+..++..+...+.+.|++++|.+.+..+.+.++.+.. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 888888765 25557778888889999999999999888887643221 1100000
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL---A 451 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~ 451 (640)
..+..++..-......+.....+....+ .++..+..+...+...|++++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111122233444455555542 36777777788888888888888888888874 3444311 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--CC-CCCCHHHHHHHHHHHHHc
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST--MP-FQPGCSIWESILRASAIY 528 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~~~~ 528 (640)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111122334555666666655554311111113344455555555555555555552 21 344544444555555555
Q ss_pred CChHHHHHHHHHHH
Q 006580 529 GDVKLTENVAERMM 542 (640)
Q Consensus 529 ~~~~~a~~~~~~~~ 542 (640)
|+.++|.+++++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=9.2e-11 Score=104.41 Aligned_cols=311 Identities=9% Similarity=0.043 Sum_probs=198.2
Q ss_pred hcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHH
Q 006580 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVG-FLSN--SIVLSATIDLFSKCNRLED 299 (640)
Q Consensus 223 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~ 299 (640)
-+.++++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..|.|.++++.+.++. ++.+ ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567788888888887621 2223345566677777888888888887777652 1111 1233445566667777777
Q ss_pred HHHHHHhcCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhC
Q 006580 300 SVRLFEQLDRWDY---AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSG 376 (640)
Q Consensus 300 A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~ 376 (640)
|+.+|..+.+.+. .....|+..|-...+|++|+++-+++.+.+-++..+-
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e--------------------------- 178 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE--------------------------- 178 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---------------------------
Confidence 7777777665332 2444566666677777777776666665443322111
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 006580 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLL 455 (640)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~ 455 (640)
+.+ .|--+...+....+.+.|..++.+..+. .|+.+ .-..+.+
T Consensus 179 ----------IAq------------------------fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~ 222 (389)
T COG2956 179 ----------IAQ------------------------FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGR 222 (389)
T ss_pred ----------HHH------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhH
Confidence 111 1223444455566777778887777774 34333 3334456
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++. ..+....-..+........-.+.|
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHH
Confidence 677778888888888877765 444445567777788888888888888887765 556666566666655566666777
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHH---hcCChHHHHHHHHHHHhCCCccCCceeeEEecCEEEEEe
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYA---MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFN 599 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 599 (640)
...+.+-+...|. ...+..|+.... ..|.+++-..+++.|....++..|.+.+...+-..+.|.
T Consensus 302 q~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 302 QAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 7777777777775 445555555443 346788889999999998888888777666665555553
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.8e-10 Score=105.89 Aligned_cols=287 Identities=14% Similarity=0.101 Sum_probs=213.5
Q ss_pred cCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006580 224 SGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303 (640)
Q Consensus 224 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (640)
.|+|.+|..++.+-.+.+-.| ...|.....+.-+.|+.+.+..++.++.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888876655332 2346666677778889999988888888775566777788888888889999888887
Q ss_pred HHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCc
Q 006580 304 FEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN 380 (640)
Q Consensus 304 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 380 (640)
++++.+ .++........+|.+.|++.....++..|.+.|.-.|...- ++ -
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------~l-----------e 228 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------RL-----------E 228 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------HH-----------H
Confidence 776544 57778888999999999999999999999998765443211 11 1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 457 (640)
..+++.+++-....+..+.-...|+..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ .-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhh
Confidence 1233445554455555555556777766 34677777788888999999999999999998877777322 2346
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHH
Q 006580 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTEN 536 (640)
Q Consensus 458 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 536 (640)
.+.++...-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+... ..|+...|+-+..++.+.|+..+|.+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 677888777777777666444444 677888888888888888888888766 78888888888888888888888888
Q ss_pred HHHHHHhc
Q 006580 537 VAERMMDL 544 (640)
Q Consensus 537 ~~~~~~~~ 544 (640)
+.++.+..
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 88887754
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=3e-11 Score=120.22 Aligned_cols=275 Identities=8% Similarity=-0.020 Sum_probs=197.0
Q ss_pred hcCCHHHHHHHHHhcCCC--Chhh-HHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH--hhCCC-CChHHHH
Q 006580 293 KCNRLEDSVRLFEQLDRW--DYAV-INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL--SSIPI-PPVEHGS 366 (640)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l--~~~~~-~~~~~a~ 366 (640)
..|+++.|.+.+....+. ++.. +-....+..+.|+++.|.+.+.++.+. .|+......+. ..... |+.+.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 369999999888876653 2233 333344457889999999999998764 55554333222 23333 8999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC---Chh--------HHHHHHHHHHhCCChHHHHHHH
Q 006580 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR---DLV--------SWNTIMMGLTQNGRAAETLDVF 435 (640)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--------~~~~li~~~~~~g~~~~a~~~~ 435 (640)
..++.+.+.. |.++.....+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998888776 666778888889999999999999888888732 111 3333344444445566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-
Q 006580 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP- 513 (640)
Q Consensus 436 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 513 (640)
+.+-+. .+.+......+..++...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+.+++.. ..|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 666443 3456677788888889999999999998877653 4555322 2233345588888988888876 445
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
|+..+..+...|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|...+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66678888899999999999999999999988865 5567888899999999999888886644
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.3e-11 Score=120.64 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=184.5
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHH
Q 006580 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGF--LSNSIVLSATIDLFSKCNRLEDSVRLF 304 (640)
Q Consensus 227 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (640)
.++|+..|.+..+ .+.-+......+.++|...+++++++++|+.+.+... .-+..+|.+.+-.+-+.-.+.---.-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555332 1222222334445555555566666666655554421 123334444433222211111111111
Q ss_pred HhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHH
Q 006580 305 EQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVA 384 (640)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 384 (640)
-.+....+.+|.++..+|.-+++.+.|++.|++..+ .+ +.....|
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----------------------------------ld-p~faYay 458 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----------------------------------LD-PRFAYAY 458 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----------------------------------cC-Cccchhh
Confidence 112223445566666666666666666665555544 21 2245566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCChhHHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNT---IMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYG 460 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 460 (640)
+.+..-+.....+|.|...|+.....|+..||+ +...|.+.++++.|+-.|++..+ +.|.. +....+...+.+.
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQL 536 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHh
Confidence 777777778888999999999988777766655 56789999999999999999998 56654 4555666778889
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 006580 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVA 538 (640)
Q Consensus 461 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 538 (640)
|+.++|++++++.... -+-|+..--..+..+...+++++|+..++++. ..| +...+..+...|.+.|+.+.|+.-|
T Consensus 537 k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 9999999999988753 23344455556777888999999999999998 666 5667888899999999999999999
Q ss_pred HHHHhcCCCCh
Q 006580 539 ERMMDLQLPSP 549 (640)
Q Consensus 539 ~~~~~~~p~~~ 549 (640)
.-+..++|+-.
T Consensus 615 ~~A~~ldpkg~ 625 (638)
T KOG1126|consen 615 SWALDLDPKGA 625 (638)
T ss_pred HHHhcCCCccc
Confidence 99999999654
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.8e-09 Score=101.10 Aligned_cols=423 Identities=13% Similarity=0.087 Sum_probs=271.7
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChH
Q 006580 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197 (640)
Q Consensus 121 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 197 (640)
.-..++++..|..+|+..+... .-+...|.-.+.+=. .+.+|+.+++..+.. .|.-...|-..+-+--..|++.
T Consensus 82 wEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccH
Confidence 3344567777888888877642 111111111111111 677788888887777 6666666666666666667788
Q ss_pred HHHHHHhccC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 006580 198 YAFGVFLNME--ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275 (640)
Q Consensus 198 ~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 275 (640)
.|.++|+.-. +|+...|++.|+.-.+...++.|..++++..- +.|+..+|.-..+.=.+.|+...+..+|+.+++.
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 8888887655 67777888888777777778888888877765 3477777777777777777777777777766654
Q ss_pred -CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChh
Q 006580 276 -GF-LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR----WD-YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348 (640)
Q Consensus 276 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 348 (640)
|- ..+...+.++...-.++..++.|.-+|+-..+ .. ...|......=-+-|+-.......-
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv------------ 304 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV------------ 304 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh------------
Confidence 11 11223344444444444555555555443221 00 1111111111111122111111100
Q ss_pred hHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCh---hHHHHHH----
Q 006580 349 TLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDL---VSWNTIM---- 419 (640)
Q Consensus 349 t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li---- 419 (640)
.+-.--++..++.+ +.|-.++--.++.-...|+.+...++|++... |.. ..|...|
T Consensus 305 --------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 305 --------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred --------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 00011122333322 45555666667777778888888888888762 211 1122211
Q ss_pred ----HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 420 ----MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC----NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 420 ----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
-.-....+.+.+.++++..++. ++-...||.-+--.| .++.++..|.+++.... |.-|...++...|.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHH
Confidence 1123467889999999999884 455556766554333 46788999999998776 88999999999999
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcCChHH
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS--PLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 567 (640)
.-.+.++++...+++++.. ..| +..+|......-...|+.+.|..+|+-++.....+ ...|...++.=...|.+++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 9999999999999999987 666 88899999988889999999999999998774422 3456677777788999999
Q ss_pred HHHHHHHHHhCC
Q 006580 568 IVRVKKVMRKNG 579 (640)
Q Consensus 568 a~~~~~~m~~~~ 579 (640)
|..+++++.+..
T Consensus 526 aR~LYerlL~rt 537 (677)
T KOG1915|consen 526 ARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHhc
Confidence 999999998865
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.7e-10 Score=106.52 Aligned_cols=261 Identities=10% Similarity=0.036 Sum_probs=186.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhh
Q 006580 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA---VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356 (640)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~ 356 (640)
+..+.....+-+...+++.+..++++.+.+.|+. .+..-|.++...|+..+-..+=.+|.+.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--------------- 307 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--------------- 307 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---------------
Confidence 4444444455555555566655555555443322 2333344444555544444444444432
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHH
Q 006580 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLD 433 (640)
Q Consensus 357 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~ 433 (640)
.|..+.+|-++.-.|.-.|+..+|++.|.+...- =...|-.+..+|+-.|..++|+.
T Consensus 308 --------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 308 --------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred --------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHH
Confidence 2555666777777787889999999999887733 23578899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 006580 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-- 510 (640)
Q Consensus 434 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 510 (640)
.+...-+. ++-....+..+..-|.+.++.+.|.++|.... ++.| |+..++-+.-.....+.+.+|..+|+...
T Consensus 368 aY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 368 AYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 99888774 22233334445556788899999999999876 4555 45667777777778889999999988765
Q ss_pred ------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 511 ------FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 511 ------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.++ =.++++.|.-+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+++.|...|.+.....
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 111 245688899999999999999999999999999999999999999999999999999998876543
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=2.6e-13 Score=129.02 Aligned_cols=251 Identities=14% Similarity=0.146 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-
Q 006580 286 ATIDLFSKCNRLEDSVRLFEQL-DR----WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI- 359 (640)
Q Consensus 286 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~- 359 (640)
.+...+.+.|++++|++++++. .. .+...|..+.......++++.|.+.++++...+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455566666666666666332 11 23444555555555666677777777776654322 33334444444 34
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCChHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-----KRDLVSWNTIMMGLTQNGRAAETLDV 434 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~ 434 (640)
++.+.|..+.....+. .+++..+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6777777666555443 2455666778888999999999999988854 34677888899999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 006580 435 FEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQ 512 (640)
Q Consensus 435 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 512 (640)
+++..+. .|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|+..+++.. ..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999994 665 567888999999999999999999988875 26677788899999999999999999999987 34
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 513 P-GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 513 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
| |+.....+..++...|+.++|.++.+++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 4 8889999999999999999999999887653
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.5e-10 Score=102.83 Aligned_cols=251 Identities=9% Similarity=0.024 Sum_probs=188.4
Q ss_pred HHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhC-CC-CChHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhc
Q 006580 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PI-PPVEHGSQFHSMAIKSGF--DSNAVVASSLMEMYAKT 394 (640)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~-~~-~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 394 (640)
..++-...+.+++.+-...+...|+.-+.. +.+.+.++ .. .|+++|..+|+.+.+... -.|..+|+.++ |++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~-i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMY-IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHH-HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 344555556677777777777666544333 33333333 33 788888888888887732 12455555544 3333
Q ss_pred CC--hH-HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHH
Q 006580 395 GS--ID-SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVF 470 (640)
Q Consensus 395 g~--~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~ 470 (640)
.+ +. -|..++ .+.+--+.|.-++..-|.-.++.++|...|++..+ +.|... .++.+..-|...++...|++.+
T Consensus 311 ~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 11 122222 22233345666677778888999999999999998 456654 6666667799999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
+...+ -.+.|-..|-.|.++|.-.+.+.-|+-+|+++. .+| |...|.+|...|.+.++.++|+..|.+++..+--+
T Consensus 388 RrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99885 334567789999999999999999999999987 677 88899999999999999999999999999998778
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 549 PLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
..+|..|+++|-+.++.++|...+++..+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999988765
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=6e-11 Score=118.85 Aligned_cols=278 Identities=9% Similarity=-0.024 Sum_probs=153.1
Q ss_pred HhcCCHHHHHHHHHhcCCC--Ch-hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhh--HHHHHhhCCC-CChHHH
Q 006580 292 SKCNRLEDSVRLFEQLDRW--DY-AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT--LSCVLSSIPI-PPVEHG 365 (640)
Q Consensus 292 ~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~~l~~~~~-~~~~~a 365 (640)
...|+++.|.+.+.+..+. +. ..+-....+..+.|+++.|.+.+.+..+. .|+... -......... |+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567788887777766542 21 22333345566677788888877777653 233321 1111222233 677777
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC---ChhHHHH----HHHHHHhCCChHHHHHHHHHH
Q 006580 366 SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR---DLVSWNT----IMMGLTQNGRAAETLDVFEEL 438 (640)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~a~~~~~~m 438 (640)
...++.+.+.. |.++.+...+...+.+.|+++.|.+.+..+.+. +...+.. ...+....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766664 445556666677777777777777766666532 2222211 111222233333344455555
Q ss_pred HHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHH-HHHHHH--HHhcCChHHHHHHHHhCC-C
Q 006580 439 LEEGLP---PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-ACIIDL--LCQAGQLGKAIDITSTMP-F 511 (640)
Q Consensus 439 ~~~g~~---p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~-~ 511 (640)
.+.... .+...+..+...+...|+.++|.+.+++..+. .|+.... ..++.. ....++.+.+.+.+++.. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 553211 15556666666677777777777777766653 2332210 001111 223355666666666554 3
Q ss_pred CC-CH--HHHHHHHHHHHHcCChHHHHHHHHH--HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 512 QP-GC--SIWESILRASAIYGDVKLTENVAER--MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 512 ~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
.| |+ ....++...|.+.|++++|.+.+++ +.+..|++ ..+..++..+.+.|+.++|.+++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 34 4556667777777777777777773 44455543 335577777777777777777776543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.4e-10 Score=105.71 Aligned_cols=217 Identities=14% Similarity=0.037 Sum_probs=169.9
Q ss_pred HHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHH
Q 006580 321 TYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399 (640)
Q Consensus 321 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 399 (640)
-+.-.|+.-.|..-|+..+.....++.. |..+-..+.. .+.++....|..+.+.+ +.++.+|..=.+++.-.++++.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3455688888999999888865444442 5555556667 88888888998888876 5567777777788888899999
Q ss_pred HHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 400 STEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 400 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
|..-|++...- ++..|-.+.-+..+.+++++++..|++.++. ++.....|+.....+...++++.|.+.|+...+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998843 4556666766777889999999999999986 6666789999999999999999999999988753
Q ss_pred hCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 477 YGVMPG---------EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 477 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
.|+ +.+-..++. +.-.+++..|.++++++. ..| ....+.+|...-.+.|+.++|+++|++...+
T Consensus 492 ---E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 ---EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333 112222222 223489999999999987 566 5668999999999999999999999998877
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.5e-10 Score=107.42 Aligned_cols=198 Identities=16% Similarity=0.077 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788899999999999999988762 356678888899999999999999999999853 3455677788888
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 534 (640)
+...|++++|.+.++...+..........+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988642223345567778889999999999999999876 444 577888999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
...++++++..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887654
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6e-09 Score=100.16 Aligned_cols=470 Identities=13% Similarity=0.019 Sum_probs=269.7
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhc--CCCCChhhHHHHHHHH
Q 006580 14 SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDE--IPQKNCISWNICLRGL 91 (640)
Q Consensus 14 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~~ 91 (640)
+..-+..+++-+..+.++..|.-+-++....+..|+. ---+++++.-.|+++.|..+... +.+.|..........+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 4566788888888889999999999888776644433 33466778888889988888765 4457888888899999
Q ss_pred hcCCChhHHHHHhcc----CCC-------------CCcch----HHHHHH-------HHHhCCChHHHHHHHHHHHHCCC
Q 006580 92 LKSDNLDTALKVFDE----IPE-------------PDVVS----WNSMIS-------GYASCGYSDYALEMFSKMQLQGV 143 (640)
Q Consensus 92 ~~~~~~~~A~~~~~~----~~~-------------~~~~~----y~~li~-------~~~~~~~~~~a~~~~~~m~~~g~ 143 (640)
.+..+++.|..++.. +.. +|..- -+.-.. .|....+.++|...|.+...
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--- 169 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--- 169 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh---
Confidence 999999999999983 220 11111 111112 23334456666666666544
Q ss_pred CCChhhHHHHHHHHh-chhHHHHHHHHHHHhC---CCCCchhHHHHHHHhhhcCCChHHHHHHHh--ccC--CCCeeeHH
Q 006580 144 RPSGFTFSILLSTVS-SACHGKQIHGSMIRSG---LSLSNVVLGNSLIDMYGKLGVLYYAFGVFL--NME--ELDIISWN 215 (640)
Q Consensus 144 ~p~~~t~~~ll~~~~-~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~--~~~~~~~~ 215 (640)
.|...|..+..... ..-.+.+.++.+.... ....+......+.....-...-++....-. .+. +.+.....
T Consensus 170 -~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 170 -ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred -cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 35555555544444 3333323333222211 011112111112111100000000000000 000 12334444
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006580 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295 (640)
Q Consensus 216 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 295 (640)
.-.+-+...+++++...+.+...+. .++....+..-|.++...|+..+-..+-..+++.- +....+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 5556777889999999999998874 34566666666778888888887777777777653 456778888888888889
Q ss_pred CHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHH
Q 006580 296 RLEDSVRLFEQLDRWD---YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSM 371 (640)
Q Consensus 296 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~ 371 (640)
..++|.+.|.+...-| ...|-....+|+-.|.-+.|+..+...-+.-..-....+-.-+ -+.+ ++.+.|.+++.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm-ey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM-EYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH-HHHHhccHHHHHHHHHH
Confidence 9999999998876533 3478888889999999999998887765531111111111111 1222 555555555555
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CC---CC-
Q 006580 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEE--GL---PP- 445 (640)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~p- 445 (640)
+.... |.|+.+.+-+.-.....+ .+.+|..+|+..+.. .+ ++
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~-------------------------------~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYE-------------------------------EYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHh-------------------------------hhHHHHHHHHHHHHHhhhccccccc
Confidence 44432 334444444444444444 444444444444310 00 01
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 006580 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRA 524 (640)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~ 524 (640)
-..+++.|..+|.+.+.+++|+..++.... -.+-+..++.++.-.|...|+++.|.+.|.+.. .+|+..+...++..
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 123455555556666666666666665554 234445555566556666666666666666555 55655544444444
Q ss_pred HH
Q 006580 525 SA 526 (640)
Q Consensus 525 ~~ 526 (640)
+.
T Consensus 532 ai 533 (611)
T KOG1173|consen 532 AI 533 (611)
T ss_pred HH
Confidence 43
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8e-09 Score=95.28 Aligned_cols=374 Identities=11% Similarity=0.010 Sum_probs=247.1
Q ss_pred CCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeH-HHHHHHHHhcCC--hhH-------------HHHHHHHhHHC
Q 006580 177 LSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW-NSLISGCFNSGY--GEL-------------ALDQFYSMRYS 240 (640)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~--~~~-------------A~~~~~~m~~~ 240 (640)
+.+....--.+.+|...++-+.|...+.+.+..-...- |.++.-+.+.|. .+. |++.+.-..+.
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l 173 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLEL 173 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHH
Confidence 44555556667777777888888888777764322222 222222222221 111 22222222222
Q ss_pred C---------------CCCCcchHHHHHHHHhc--cCCchHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006580 241 G---------------YSPDEYTISIVINACTK--LRNLDKGKQVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVR 302 (640)
Q Consensus 241 g---------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 302 (640)
+ +.|...+....+.+++. .++-..+...+-.+... -++-|......+..++...|+.++|+.
T Consensus 174 ~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 174 GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 2 23444444444554433 34444444444444433 356677889999999999999999999
Q ss_pred HHHhcCCCChhhHHH---HHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCC
Q 006580 303 LFEQLDRWDYAVINV---MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDS 379 (640)
Q Consensus 303 ~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 379 (640)
.|++..--|+.+... ..-.+.+.|+.+....+...+....-..-...|...-..+...+.+.|..+-++.++.+ +.
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r 332 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PR 332 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cc
Confidence 999887655443322 23345678888888888777765421111222222222222278888888888877754 33
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC--C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD--K-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL-L 455 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~ 455 (640)
+...+-.-..++...|++++|.-.|+... . -+..+|.-|+.+|...|++.+|+-+-+..... ++.+..+...+. .
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 44444444567788999999999998876 4 37889999999999999999999888777664 455556655542 2
Q ss_pred HHh-ccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChH
Q 006580 456 ACN-YGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVK 532 (640)
Q Consensus 456 ~~~-~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 532 (640)
.|. ....-++|..++++-. .+.|+ ......+...+...|+.+.++.++++.. ..||....+.|...+...+.+.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 332 3344578888888765 44565 3456777888999999999999999987 8899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHH
Q 006580 533 LTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
+|.+.|..++.++|.+..+...|
T Consensus 489 ~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999886554433
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.9e-08 Score=100.43 Aligned_cols=452 Identities=11% Similarity=0.033 Sum_probs=270.1
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh------chhHH-------------------HHH----HHHHHHhC
Q 006580 124 SCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS------SACHG-------------------KQI----HGSMIRSG 174 (640)
Q Consensus 124 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~------~~~~a-------------------~~~----~~~~~~~~ 174 (640)
..++.+.++.-+......+...+..++..+..... +.+.+ ... +.++.. +
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~-~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRL-K 317 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH-h
Confidence 34666777777777777777777777776655554 22222 111 111111 1
Q ss_pred CCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHH
Q 006580 175 LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE---LDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISI 251 (640)
Q Consensus 175 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ 251 (640)
.+..+..+|..|.-+..++|+++.+-+.|++... .....|+.+...+...|.-..|+.+++.-....-.|+..+-..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 1455777777777778888888888888877653 2345677777778888888888888877655333344333322
Q ss_pred H-HHHH-hccCCchHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhcCC---CC
Q 006580 252 V-INAC-TKLRNLDKGKQVFALSVKV--GF--LSNSIVLSATIDLFSKC-----------NRLEDSVRLFEQLDR---WD 311 (640)
Q Consensus 252 l-l~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~---~~ 311 (640)
+ -..| .+.+..+++..+-..++.. +. ......|..+.-+|... ....++++.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 2333 2456666666666666552 11 11233344444444321 123345555555533 23
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 006580 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390 (640)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (640)
..+.--+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+.. +++..|..+.+.....- +.|......-++.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 322222333456667777777777777776555566666655555555 77777777666555421 1111111122222
Q ss_pred HHhcCChHHHHHHHHhCCC-----CChhHH---HHHHH----HHHhCCChHHHHHHHHHHH--------HCC--------
Q 006580 391 YAKTGSIDSSTEIFVKLDK-----RDLVSW---NTIMM----GLTQNGRAAETLDVFEELL--------EEG-------- 442 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~~~-----~~~~~~---~~li~----~~~~~g~~~~a~~~~~~m~--------~~g-------- 442 (640)
-..-++.+++......+.. +.+..- ..+.. .....++..+|.+....+. ..|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 2335566665555444431 100000 00000 0001122333332222211 111
Q ss_pred -CC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 006580 443 -LP--PDR------ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQ 512 (640)
Q Consensus 443 -~~--p~~------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 512 (640)
+. |+. ..+......+.+.++.++|...+.+... ..+.....|......+...|++++|.+.|.... ..
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 11 221 1233445667788899999988888775 334455667777788899999999999998887 67
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 513 P-GCSIWESILRASAIYGDVKLTEN--VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 513 ~-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
| ++.+..++...+.+.|+...|.. ++..+++.+|.++..|..++.++.+.|+.++|.+-|.......
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 7 67799999999999998888888 9999999999999999999999999999999999999887654
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=1.1e-07 Score=92.79 Aligned_cols=508 Identities=15% Similarity=0.106 Sum_probs=315.6
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHhcCCC-----CChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 006580 50 TYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-----KNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYAS 124 (640)
Q Consensus 50 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~ 124 (640)
+.+|-.-+..+.+.|++...+..|++... .....|...+......+-++.++++++...+-++..-+--|..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34556666667777888888888877543 3345788888888888999999999999888777778888999999
Q ss_pred CCChHHHHHHHHHHHHCC------CCCChhhHHHHHHHHh-chh-----HHHHHHHHHHHhCCCCC-chhHHHHHHHhhh
Q 006580 125 CGYSDYALEMFSKMQLQG------VRPSGFTFSILLSTVS-SAC-----HGKQIHGSMIRSGLSLS-NVVLGNSLIDMYG 191 (640)
Q Consensus 125 ~~~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~-~~~-----~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 191 (640)
.+++++|.+.+....... -+.+...|.-+....+ +.+ ...++++.++.. ++. -...|.+|.+-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 999999999998876532 1233344444444444 222 233444444444 222 2468899999999
Q ss_pred cCCChHHHHHHHhccCCC--CeeeHHHHHHHHHhc----------------CC------hhHHHHHHHHhHHCCC-----
Q 006580 192 KLGVLYYAFGVFLNMEEL--DIISWNSLISGCFNS----------------GY------GELALDQFYSMRYSGY----- 242 (640)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------~~------~~~A~~~~~~m~~~g~----- 242 (640)
+.|.++.|.+++++.... ++.-|..+.++|+.- ++ ++-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 999999999999886632 222233333333321 11 1223333444433210
Q ss_pred ---CCCcchHHHHH-HHHhccCCchHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 006580 243 ---SPDEYTISIVI-NACTKLRNLDKGKQVFALSVKVGFLS------NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312 (640)
Q Consensus 243 ---~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 312 (640)
.-|+......+ +.-...|+..+....+.++++.- .| -...+..+...|-..|+++.|..+|++..+-+-
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 11111111111 11223456666677777776641 12 123577888888999999999999998876332
Q ss_pred h-------hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHH
Q 006580 313 A-------VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVAS 385 (640)
Q Consensus 313 ~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 385 (640)
. +|..-...=.+..+++.|+++.+.... .|.... +..+-.+..-++ .+ --+..++.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~yd~~~pvQ~-rl---------hrSlkiWs 481 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYYDNSEPVQA-RL---------HRSLKIWS 481 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhhcCCCcHHH-HH---------HHhHHHHH
Confidence 2 454445555566777788877666543 333221 111111111110 11 11344556
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCChhHHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTI---MMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACN--- 458 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~--- 458 (640)
..++.--..|-++....+++++..--+.|-..+ ..-+-.+.-++++.+.|++-+..--.|+.. .|+..+.-+.
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 667777778899999999998874322222222 222334566888999998877754456553 5555554443
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCChH
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPGEE--HYACIIDLLCQAGQLGKAIDITSTMP--FQPG--CSIWESILRASAIYGDVK 532 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~ 532 (640)
....++.|..+|++..+ +.+|... .|-.....-.+-|-...|+++++++. .++. ...||..|.-....=-+.
T Consensus 562 gg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred cCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 34578999999999988 7776543 22222333345688899999999987 3332 346777765444433455
Q ss_pred HHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 533 LTENVAERMMDLQLPS--PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
....+|+++++.-|++ .......++.=.+.|..+.|..++..-.+-.
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 6778999999997743 3345566777788999999999998765543
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.1e-07 Score=92.29 Aligned_cols=461 Identities=11% Similarity=0.062 Sum_probs=250.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHh--c
Q 006580 16 SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLL--K 93 (640)
Q Consensus 16 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~--~ 93 (640)
..+.+=++.....+.+++|.+...+++..+ +.++..+..-+.++.+.+.+++|..+.+.-........-.+=.+|| +
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 345566677788899999999999999877 6677778888888899999999997777654311111111345555 7
Q ss_pred CCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhchhHHHHHHHHHHH
Q 006580 94 SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP-SGFTFSILLSTVSSACHGKQIHGSMIR 172 (640)
Q Consensus 94 ~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~a~~~~~~~~~ 172 (640)
.+.+++|+..++...+.|..+-..=.+.+-+.|++++|+++|+.+.+++..- +...-..++.+..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------------- 157 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------------- 157 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--------------
Confidence 8999999999996666666677777788999999999999999998875431 1111111111110
Q ss_pred hCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHH---HHHHhcCChhHHHHHHHHhHHCCC-------
Q 006580 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI---SGCFNSGYGELALDQFYSMRYSGY------- 242 (640)
Q Consensus 173 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~------- 242 (640)
. -.+. +.+........+|..+- -.+...|++.+|+++++.....+.
T Consensus 158 -------------------~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 158 -------------------A----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred -------------------h----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 0 0000 12222221222332222 234456677777777666532110
Q ss_pred ------CCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhH
Q 006580 243 ------SPDEYT-ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVI 315 (640)
Q Consensus 243 ------~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 315 (640)
.-+..+ -..+.-.+...|+-++|..++...++... +|...... .-
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av---------------------------~~ 265 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAV---------------------------AV 265 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHH---------------------------Hh
Confidence 000000 01111223334444444444444444432 11111100 11
Q ss_pred HHHHHHHHhCCChH-HHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006580 316 NVMISTYGRYGFGE-VALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394 (640)
Q Consensus 316 ~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 394 (640)
|.|+..-....-++ .++..++..... + .+....-+..-. ......-+.++.+|.
T Consensus 266 NNLva~~~d~~~~d~~~l~~k~~~~~~--------l-----------~~~~l~~Ls~~q----k~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 266 NNLVALSKDQNYFDGDLLKSKKSQVFK--------L-----------AEFLLSKLSKKQ----KQAIYRNNALLALFT-- 320 (652)
T ss_pred cchhhhccccccCchHHHHHHHHHHHH--------h-----------HHHHHHHHHHHH----HHHHHHHHHHHHHHh--
Confidence 11211111111111 122222221110 0 000000000000 000111133444443
Q ss_pred CChHHHHHHHHhCCCCC-hhHHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 006580 395 GSIDSSTEIFVKLDKRD-LVSWNTIMMGLT--QNGRAAETLDVFEELLEEGLPPDR--ITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 395 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
+..+.+.++-....... ...+.+++.... +...+..+.+++...-+. .|+. ......+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33455666655555322 233334443322 222467777777777664 3433 3444555667788899999888
Q ss_pred HH--------HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHHcCChH
Q 006580 470 FS--------AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-----FQPG----CSIWESILRASAIYGDVK 532 (640)
Q Consensus 470 ~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~~~~~ 532 (640)
+. .+. .+...+.+...+...+.+.++.+.|..++.+.. ..+. ..+|.-+...-.++|+-+
T Consensus 399 l~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 88 333 233445566677788888887776777666654 1222 223444445556789999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
+|..+++++++.+|++......++.+|++. +.+.|..+-+.
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999999999999888855 56666665443
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=6.7e-09 Score=92.82 Aligned_cols=268 Identities=13% Similarity=0.072 Sum_probs=148.0
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccCC-CCee------eHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcch
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-LDII------SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 248 (640)
.+.+..+.-+|.+.|-+.|..+.|+++-+.+.+ ||.. ..-.|.+-|...|-++.|.++|..+.+.|. --...
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~A 143 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGA 143 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHH
Confidence 455566667788888888888888888877763 4432 122345566677777777777777766432 22334
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCCh
Q 006580 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFG 328 (640)
Q Consensus 249 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 328 (640)
...|+..|....+|++|.+.-+.+.+.+..+...- +.. .|..|...+....+.
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAq------------------------fyCELAq~~~~~~~~ 196 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQ------------------------FYCELAQQALASSDV 196 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHH------------------------HHHHHHHHHhhhhhH
Confidence 55566666666666666666666665543332210 111 123333444444555
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHhhCCC--CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 329 EVALELFQLMLREDIRPTEFTLSCVLSSIPI--PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406 (640)
Q Consensus 329 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 406 (640)
+.|..++.+..+. .|+.+--+.++.-... |+.+.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+.+
T Consensus 197 d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 197 DRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5566666555543 3333333333332222 55555555555555544444455556677777777777777777766
Q ss_pred CC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhHH
Q 006580 407 LD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY---GGFVDKGMLVFSAMKE 475 (640)
Q Consensus 407 ~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~ 475 (640)
+. .+++..-..+...-....-.+.|..++.+-... +|+...+..++..-.. .|...+....++.|..
T Consensus 275 ~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 275 AMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 65 234444444444444444455566555555543 6777777777665432 2334555555555544
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=3.5e-09 Score=97.66 Aligned_cols=286 Identities=12% Similarity=-0.024 Sum_probs=217.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCC----ChhhHHHHHHHHhcCCChhHHHHH
Q 006580 28 FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQK----NCISWNICLRGLLKSDNLDTALKV 103 (640)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~ 103 (640)
.|++.+|++...+..+.+-.| ...|..-..+--..|+.+.+-..+.+..++ +....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 599999999999988877433 445777777778889999999999998763 334566677788889999999888
Q ss_pred hccCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCch
Q 006580 104 FDEIP---EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNV 180 (640)
Q Consensus 104 ~~~~~---~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (640)
++... ..++.......++|.+.|++.....++..|.+.|+--+...- ....
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--------------------------~le~ 229 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--------------------------RLEQ 229 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------------------HHHH
Confidence 77654 467888899999999999999999999999998876544321 1123
Q ss_pred hHHHHHHHhhhcCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh
Q 006580 181 VLGNSLIDMYGKLGVLYYAFGVFLNME---ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257 (640)
Q Consensus 181 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 257 (640)
.+|..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-.+.
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l 305 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhc
Confidence 445556666656666666566666666 34566677788888899999999999998888777666 22233556
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHH
Q 006580 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR--WDYAVINVMISTYGRYGFGEVALELF 335 (640)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 335 (640)
+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|.+.|+...+ ++..+|+.+..+|.+.|+..+|.+++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 6777777777777666553 33557888899999999999999999987654 68888999999999999999999988
Q ss_pred HHHhhCCCCC
Q 006580 336 QLMLREDIRP 345 (640)
Q Consensus 336 ~~m~~~~~~p 345 (640)
++....-.+|
T Consensus 385 ~e~L~~~~~~ 394 (400)
T COG3071 385 REALLLTRQP 394 (400)
T ss_pred HHHHHHhcCC
Confidence 8876443333
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=1.4e-09 Score=107.74 Aligned_cols=193 Identities=16% Similarity=0.163 Sum_probs=150.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCC-CCH
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDK----------R-DLVSWNTIMMGLTQNGRAAETLDVFEELLE-----EGLP-PDR 447 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~ 447 (640)
+.+...|...+++++|..+|+++.. | -..+++.|..+|.+.|++++|..++++..+ .|.. |..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 4567788889999999988888761 2 234778888899999999998888877654 2222 233
Q ss_pred H-HHHHHHHHHhccCCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------C
Q 006580 448 I-TLAAVLLACNYGGFVDKGMLVFSAMKEEYG--VMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP---------F 511 (640)
Q Consensus 448 ~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~ 511 (640)
. -++.+...|+..+.+++|..+++...+.+. ..++ ..+++.|...|...|++++|.++++++. .
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2 456677778999999999999998766533 2222 3578999999999999999999999875 1
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 512 QP-GCSIWESILRASAIYGDVKLTENVAERMMDL----QL---PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 512 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.+ ....++.+...|.+.+++.+|.++|.+.+.. +| .-..+|.+|+..|.+.|++++|.++.+.+..
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 2457888999999999999999999988765 44 4456799999999999999999999988863
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.4e-11 Score=81.53 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006580 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459 (640)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 459 (640)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.2e-11 Score=80.52 Aligned_cols=49 Identities=39% Similarity=0.864 Sum_probs=46.9
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 006580 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158 (640)
Q Consensus 110 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 158 (640)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999999998875
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=8.5e-08 Score=86.84 Aligned_cols=158 Identities=8% Similarity=0.015 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHH-HHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-CIIDL 492 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~ 492 (640)
--.++.+.+.-..++++++-.+..+.+- +..|...-..+.++.+..|++.+|.++|-.+... .+ .|..+|. .|..+
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArC 437 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARC 437 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHH
Confidence 3444555555556677777777666664 2333333335667777777777777777665432 22 2334443 34567
Q ss_pred HHhcCChHHHHHHHHhCCCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 006580 493 LCQAGQLGKAIDITSTMPFQP-GCS-IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
|.++|+++-|++++-++. .| +.. .+..+..-|-+.+.+=-|-..|..+-.++|.. ..| .|+-.....
T Consensus 438 yi~nkkP~lAW~~~lk~~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG 506 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTN-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAG 506 (557)
T ss_pred HHhcCCchHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHH
Confidence 777777777777777765 33 222 33344456667777766667776666666632 222 234444445
Q ss_pred HHHHHHhCCCccCCc
Q 006580 571 VKKVMRKNGINKVTG 585 (640)
Q Consensus 571 ~~~~m~~~~~~~~~~ 585 (640)
+|+.+.....++.|+
T Consensus 507 ~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 507 LFRQLANHKTDPIPI 521 (557)
T ss_pred HHHHHHcCCCCCCch
Confidence 555555444444443
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=3.2e-07 Score=91.92 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDL 492 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~ 492 (640)
.|......+.+.++.++|...+.+.... .+-....|......+...|.+.+|.+.|.... -+.|+ +.+..++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 4666677888899999999888888774 23344466666667788899999999998766 44555 5688999999
Q ss_pred HHhcCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 006580 493 LCQAGQLGKAID--ITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550 (640)
Q Consensus 493 ~~~~g~~~~A~~--~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 550 (640)
+.+.|+..-|.. ++..+. ..| ++..|-.+...+.+.|+.+.|.+.|.-+.++.+.+|.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998877777 888877 566 7899999999999999999999999999999775553
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=1e-08 Score=106.87 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=156.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFE 436 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (640)
++.+.|...++++.+.+ |.+...+..+..++...|++++|...|++.. .| +...+..+...+...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55777777777777765 5566777788888899999999999999877 34 45678888889999999999999999
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 006580 437 ELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP 513 (640)
Q Consensus 437 ~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 513 (640)
+..+. .|+.. .+..++..+...|++++|+..++++... . +| ++..+..+..++...|++++|...+.++. ..|
T Consensus 397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 99984 55543 3334444566688999999999988764 2 34 45557778888999999999999998876 445
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 514 G-CSIWESILRASAIYGDVKLTENVAERMMDL---QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 514 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+ ...++.+...+...| +.|...++++.+. .+.++.. +...|.-.|+-+.+..+ +++.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4 445666666777777 4777777777665 3433333 55677778888877777 8887765
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=5.2e-06 Score=85.58 Aligned_cols=531 Identities=11% Similarity=0.049 Sum_probs=294.1
Q ss_pred hhcCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC--------
Q 006580 7 KAHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-------- 78 (640)
Q Consensus 7 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------- 78 (640)
+..|..|| |..+|+...+ -+++++.++...+.+.. +...-++.....+........+...+-.+.+
T Consensus 505 kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~ 578 (1666)
T KOG0985|consen 505 KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGH 578 (1666)
T ss_pred HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhh
Confidence 45667777 3444555544 66777777777776643 1222233444444433333333332222111
Q ss_pred -------------CCh------------hhHHHHHHHHhcCCChhHHHHHhccCCC--CCcc-----hHHHHHHHHHhCC
Q 006580 79 -------------KNC------------ISWNICLRGLLKSDNLDTALKVFDEIPE--PDVV-----SWNSMISGYASCG 126 (640)
Q Consensus 79 -------------~~~------------~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~-----~y~~li~~~~~~~ 126 (640)
|++ .-+..+.+.|.++|-...|++.+..+.. +.++ .-.. +..|...-
T Consensus 579 LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEw-Lv~yFg~l 657 (1666)
T KOG0985|consen 579 LQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEW-LVNYFGSL 657 (1666)
T ss_pred HHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHH-HHHHHHhc
Confidence 211 1356677888899999999988877653 1111 1111 22445556
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHHHHHHHHHH----------hCCCCCchhHHHHHHHhhhcC
Q 006580 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQIHGSMIR----------SGLSLSNVVLGNSLIDMYGKL 193 (640)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~~~~~~~~~----------~~~~~~~~~~~~~li~~~~~~ 193 (640)
.++.+.+.++.|...+++.|..+...+-.-+. ..+.-.++|+.... .-.+..|+.+.-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 78899999999999988888776665555554 33444444443322 111556777888889999999
Q ss_pred CChHHHHHHHhccCC-------------------C-----CeeeH-H------------HHHHHHHhcCChhHHHHHHHH
Q 006580 194 GVLYYAFGVFLNMEE-------------------L-----DIISW-N------------SLISGCFNSGYGELALDQFYS 236 (640)
Q Consensus 194 g~~~~A~~~~~~~~~-------------------~-----~~~~~-~------------~li~~~~~~~~~~~A~~~~~~ 236 (640)
|++.+.+++.++-.- | |..-+ + ..|..|.+.=++...-.+.-.
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 999999988766430 1 11101 0 122233322222211111111
Q ss_pred hHHCCCCCCcchHH-------------HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-----
Q 006580 237 MRYSGYSPDEYTIS-------------IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE----- 298 (640)
Q Consensus 237 m~~~g~~p~~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----- 298 (640)
+.+.. -+..... -+..-+.+.+++..-...++..+..|. .|..++|+|...|..+++-.
T Consensus 818 LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLk 894 (1666)
T KOG0985|consen 818 LLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLK 894 (1666)
T ss_pred hhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcc
Confidence 11100 0111111 111122223333333334444444453 35566666665555443222
Q ss_pred -----------------------------------------------------------HHHHHHHh-----------cC
Q 006580 299 -----------------------------------------------------------DSVRLFEQ-----------LD 308 (640)
Q Consensus 299 -----------------------------------------------------------~A~~~~~~-----------~~ 308 (640)
--.+++.+ +.
T Consensus 895 eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv 974 (1666)
T KOG0985|consen 895 ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVV 974 (1666)
T ss_pred cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHH
Confidence 11111110 00
Q ss_pred ------CCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCC-CChhhHHHHH-hhCCCCChHHHHHHHHHHHHhCCCCc
Q 006580 309 ------RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSCVL-SSIPIPPVEHGSQFHSMAIKSGFDSN 380 (640)
Q Consensus 309 ------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~~l-~~~~~~~~~~a~~~~~~~~~~~~~~~ 380 (640)
..|+...+.-+.++...+-+.+-+++++++.-..-. .....+..++ -...+.+......+.+++-... .|+
T Consensus 975 ~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~ 1053 (1666)
T KOG0985|consen 975 QTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD 1053 (1666)
T ss_pred HhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh
Confidence 013334445556666666666666666666532110 0111111111 1111122233333333322211 011
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCC-------------------------CChhHHHHHHHHHHhCCChHHHHHHH
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDK-------------------------RDLVSWNTIMMGLTQNGRAAETLDVF 435 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~a~~~~ 435 (640)
+.......+-+++|+.+|++... ..+..|+.+..+..+.|...+|++-|
T Consensus 1054 ------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1054 ------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred ------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 11222233334444444443320 23467999999999999999998877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH
Q 006580 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGC 515 (640)
Q Consensus 436 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 515 (640)
-+. -|+..|..+++.+.+.|.|++-.+++...+++ .-.|... +.|+-+|++.+++.+-++++ ..|+.
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~ 1194 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNV 1194 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCc
Confidence 332 35668999999999999999999999987776 5555544 57899999999999877766 36888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
.-......-|...|.++.|.-+|.. ..-|..|+..+...|++..|...-++.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888999999999999999888764 566888888888888888877655444
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=6.4e-09 Score=108.46 Aligned_cols=178 Identities=8% Similarity=0.030 Sum_probs=144.1
Q ss_pred cCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 006580 394 TGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
.+++++|...+++..+ | +...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3457899999998873 3 6678888888899999999999999999995 555 45777888889999999999999
Q ss_pred HHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006580 470 FSAMKEEYGVMPGE-EHYACIIDLLCQAGQLGKAIDITSTMP--FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQ 545 (640)
Q Consensus 470 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 545 (640)
+++..+. .|+. ..+..+...+...|++++|.+.+++.. ..| ++..+..+...+...|+.++|...++++....
T Consensus 395 ~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 9998864 4543 233344555677899999999998875 345 45567788888899999999999999998888
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 546 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
|.+......++..|...| ++|...++.+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 888888888888888888 4888888887664
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.4e-07 Score=81.79 Aligned_cols=442 Identities=10% Similarity=0.022 Sum_probs=232.6
Q ss_pred HHhcCCChhHHHHHhccCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhH
Q 006580 90 GLLKSDNLDTALKVFDEIPEP----DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACH 162 (640)
Q Consensus 90 ~~~~~~~~~~A~~~~~~~~~~----~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~ 162 (640)
-+...+++..|+.+++--... ...+--.+..++.+.|++++|+.++.-+.+.. .|+......+-.+.. ...+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344556666666665543311 11223345567778888888888888877643 333333322221111 4444
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 006580 163 GKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGY 242 (640)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 242 (640)
|+++-.. .+.++..-..|...-.+.++-++-..+-+++.... .---+|.......-.+++|++++......+
T Consensus 110 A~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 110 AKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4443322 23333333444455556666655555554444221 222334444444556788888888877643
Q ss_pred CCCcchHHHHHH-HHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHH
Q 006580 243 SPDEYTISIVIN-ACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMIST 321 (640)
Q Consensus 243 ~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 321 (640)
|+-...+.-+. +|.+..-++-+.+++.-.++. ++.+....|....-..+.=
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~-------------------------- 233 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLI-------------------------- 233 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhh--------------------------
Confidence 44444444443 444555556666666555444 1222223332222222211
Q ss_pred HHhCCChHHHHHHHHHHhhCCCCCChhhHHH-HHhh-CCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChH
Q 006580 322 YGRYGFGEVALELFQLMLREDIRPTEFTLSC-VLSS-IPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSID 398 (640)
Q Consensus 322 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-~l~~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 398 (640)
....|.+-.+.+.+.+-.. ..+.. ++.. +.. .+-+.|.+++--+.+. .|... -.|+-.|.+.+++.
T Consensus 234 -----ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVq 302 (557)
T KOG3785|consen 234 -----NGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQ 302 (557)
T ss_pred -----ccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHH
Confidence 1111112122222111000 00000 0110 001 2233333333332221 12111 23566788899999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHH
Q 006580 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGR-------AAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVF 470 (640)
Q Consensus 399 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~ 470 (640)
+|..+.+++...++.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+-++
T Consensus 303 eA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 303 EAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999988875444433222222333333 444555555544444443332 1223444445556789999998
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCC-
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWE-SILRASAIYGDVKLTENVAERMMDLQL- 546 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p- 546 (640)
+.+..- -...|. .--.+.++++..|++.+|+++|-.+. .-.|..+|. .|...|.+.+.++.|..++-++ ..|
T Consensus 383 nSi~sY-F~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~ 458 (557)
T KOG3785|consen 383 NSIESY-FTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPS 458 (557)
T ss_pred HHHHHH-hcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCch
Confidence 888763 333333 33457899999999999999998887 112445554 4556667889999887775442 233
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
........++.-|.+.+.+=-|.+.|..+...++.|.
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 3334556778899999999999999999988766555
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1.3e-08 Score=94.39 Aligned_cols=196 Identities=19% Similarity=0.175 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 006580 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392 (640)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 392 (640)
..+..+...+...|++++|.+.+++..+.. |+ +...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~---------------------------------~~~~~~~la~~~~ 76 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD---------------------------------DYLAYLALALYYQ 76 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc---------------------------------cHHHHHHHHHHHH
Confidence 345556666777777777777777765532 22 2233445566666
Q ss_pred hcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 006580 393 KTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGML 468 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~ 468 (640)
..|++++|.+.+++.. ..+...+..+...+...|++++|.+.+++.......| ....+..+...+...|++++|..
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777776655 2344566667777777888888888888877642222 23455566667778888888888
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006580 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545 (640)
Q Consensus 469 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 545 (640)
.+++..+. .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|+.+.|..+.+.+....
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88877653 23345567777788888888888888887765 23356666677777777888888888877776553
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=4.4e-09 Score=89.65 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=139.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 492 (640)
+...|.-+|...|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+. -+-+....|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 4556777899999999999999999984 5655 58888889999999999999999988752 23346678888888
Q ss_pred HHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 006580 493 LCQAGQLGKAIDITSTMPFQP----GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 568 (640)
+|..|++++|...|++....| -..+|..+.....+.|+.+.|...+++.++.+|.++.....+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 899999999999999987444 3568888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 006580 569 VRVKKVMRKNGI 580 (640)
Q Consensus 569 ~~~~~~m~~~~~ 580 (640)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999988775
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=2.1e-09 Score=95.99 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=156.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 006580 316 NVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG 395 (640)
Q Consensus 316 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 395 (640)
+.+.++|.+.|.+.+|.+.|+.-.+.... +.+|-.|-.+|.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------------------------------------~dTfllLskvY~rid 270 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------------------------------------PDTFLLLSKVYQRID 270 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc------------------------------------hhHHHHHHHHHHHhc
Confidence 44566666666666666666665554222 223334555666666
Q ss_pred ChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 006580 396 SIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSA 472 (640)
Q Consensus 396 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 472 (640)
.++.|+.+|.+.. .| ++....-+...+-..++.++|.++|+...+.. +.+......+...|.-.++++-|+.++++
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 6666666666555 23 33333344555666677777777777777641 23333444555566666777777777777
Q ss_pred hHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 473 MKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP---FQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 473 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
+.+. |+ -++..|+.+.-+|.-.++++-++.-|++.. -.|+ ..+|-.+.......||+..|.+.|+-++..+|+
T Consensus 350 iLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 7765 54 356667777777777777777777776654 2343 457888888888899999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 548 SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+...+++|+-.-.+.|+.++|..+++...+..+
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999999998887653
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=3.1e-06 Score=83.33 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 496 (640)
+++.+-+.|+++.|...++..... .|+.+ -|..=.+.+.+.|++++|..++++..+. -.||...-+.-+.-..++
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHc
Confidence 455666777777777777777663 55553 4444556677777777777777766542 234444444555556677
Q ss_pred CChHHHHHHHHhCC
Q 006580 497 GQLGKAIDITSTMP 510 (640)
Q Consensus 497 g~~~~A~~~~~~~~ 510 (640)
++.++|.++.....
T Consensus 453 n~i~eA~~~~skFT 466 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFT 466 (700)
T ss_pred cccHHHHHHHHHhh
Confidence 77777777665554
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9e-07 Score=82.13 Aligned_cols=299 Identities=11% Similarity=-0.007 Sum_probs=206.6
Q ss_pred CCCChhhHHHHHHHHh-----chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHH-
Q 006580 143 VRPSGFTFSILLSTVS-----SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNS- 216 (640)
Q Consensus 143 ~~p~~~t~~~ll~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 216 (640)
+.|...+....+.+.+ +-..+.+.+-.+.....++.|+.....+.+.+...|+..+|...|+....-|..+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 4444444444455544 3444445555555544489999999999999999999999999999887554433222
Q ss_pred --HHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006580 217 --LISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294 (640)
Q Consensus 217 --li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (640)
..-.+.+.|+.++...+...+.... +-+...|..-........+++.|..+-+..++.. +-+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 2233456788888777777765521 1233334444445556778888888887777654 22334444445678888
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH-hhCCC--CChHHHHHH
Q 006580 295 NRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL-SSIPI--PPVEHGSQF 368 (640)
Q Consensus 295 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l-~~~~~--~~~~~a~~~ 368 (640)
++.++|.-.|+.... .+..+|.-|+.+|...|.+.+|.-+-+...+. +..+..+++.+- ..|.- ..-++|+.+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999987653 47889999999999999999999877766543 333444544442 33333 566888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006580 369 HSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 446 (640)
++...+.. |.-....+.+.+.+...|..+++..++++.. .+|....+.|...+...+.+++|++.|..... +.|+
T Consensus 427 ~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 427 AEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 88777654 2224445677788888899999999888876 57888888888888888889999988888877 4554
Q ss_pred H
Q 006580 447 R 447 (640)
Q Consensus 447 ~ 447 (640)
.
T Consensus 504 ~ 504 (564)
T KOG1174|consen 504 S 504 (564)
T ss_pred c
Confidence 3
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.5e-08 Score=96.44 Aligned_cols=190 Identities=17% Similarity=0.156 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLAC 457 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 457 (640)
..+..+...|.+.|+.++|...|+...+ .+...|+.+...+...|++++|.+.|++..+ +.|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4456667778888888888888887762 3567888888888889999999998888887 4565 45677777778
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHH
Q 006580 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTE 535 (640)
Q Consensus 458 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 535 (640)
...|++++|.+.++...+. .|+..........+...+++++|.+.+.+.. ..|+ .|. ........|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-
Confidence 8888999999888887754 4443322222223445678888888886643 2232 222 12222334554333
Q ss_pred HHHHHHH-------hcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 536 NVAERMM-------DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 536 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
..++.+. ++.|....+|..++..+.+.|++++|...|++..+.++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2333333 33555667888999999999999999999988887653
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=1.3e-06 Score=86.72 Aligned_cols=336 Identities=13% Similarity=0.057 Sum_probs=191.7
Q ss_pred HHHhhhcCCChHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCch
Q 006580 186 LIDMYGKLGVLYYAFGVFLNM--EELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD 263 (640)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 263 (640)
-|..|.+.|....|.+....- ...|......+..++.+..-+++|-++|+++.. +...+.++.+-.-+.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~ 691 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFG 691 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHH
Confidence 445555666555554443211 123334444444555555555666666655543 112233333333344
Q ss_pred HHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCC
Q 006580 264 KGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED 342 (640)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 342 (640)
+|.++-+.. ++..+.. -..-...+...|+++.|+..|-+... .-..+.+-.....|.+|+.+++.++...
T Consensus 692 kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk 762 (1636)
T KOG3616|consen 692 KAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK 762 (1636)
T ss_pred HHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc
Confidence 444333221 1111111 11222334445556666555543211 1123445566778888888888887653
Q ss_pred CCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC--ChhHHHHHH
Q 006580 343 IRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR--DLVSWNTIM 419 (640)
Q Consensus 343 ~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li 419 (640)
. -..-|..+...++. |+++.|.++|.+.- .++-.|.+|.+.|++++|.++-.+...| ....|-+-.
T Consensus 763 ~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiaka 831 (1636)
T KOG3616|consen 763 T--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKA 831 (1636)
T ss_pred c--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhH
Confidence 2 23345566667777 88888888876532 2355778888888888888888887755 345566666
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 006580 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499 (640)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 499 (640)
.-+-.+|++.+|.++|-... .|+. .+..|-+.|..+..+++..+-.- ..-..+...+..-|...|++
T Consensus 832 edldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred HhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccCh
Confidence 66777888888888774442 3443 35667788888887777664321 12234555667778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
..|..-|-+.. -|.+.+..|...+-++.|.++.+ ..+-.|..-....+|+ ++=--+.|.+++.+
T Consensus 899 kaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwa--ksiggdaavkllnk 962 (1636)
T KOG3616|consen 899 KAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWA--KSIGGDAAVKLLNK 962 (1636)
T ss_pred hHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHH--HhhCcHHHHHHHHh
Confidence 88888776654 35566667777777776665543 2344455444444444 43333557777665
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=5.5e-08 Score=96.59 Aligned_cols=239 Identities=12% Similarity=0.102 Sum_probs=134.8
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C--
Q 006580 247 YTISIVINACTKLRNLDKGKQVFALSVKV-----GF-LSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDR-------W-- 310 (640)
Q Consensus 247 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 310 (640)
.+...+...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777777777777777766654 21 12222 223355566666666666666665432 1
Q ss_pred --ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 006580 311 --DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388 (640)
Q Consensus 311 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 388 (640)
-..+++.|..+|.+.|++++|...++...+- +.. ..+ ..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I---------------------------~~~--~~~-~~--------- 320 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI---------------------------YEK--LLG-AS--------- 320 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH---------------------------HHH--hhc-cC---------
Confidence 1224555555666666666666655544321 111 000 00
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhcc
Q 006580 389 EMYAKTGSIDSSTEIFVKLDKRDL-VSWNTIMMGLTQNGRAAETLDVFEELLEE---GLPPDR----ITLAAVLLACNYG 460 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~ 460 (640)
.+.+ ..++.+...++..+++++|..++++..+. -+.++. .+++.|...|...
T Consensus 321 --------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 321 --------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred --------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 0111 12233344445555555555555544331 112222 3566777777777
Q ss_pred CCHHHHHHHHHHhHHhh----C--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHH
Q 006580 461 GFVDKGMLVFSAMKEEY----G--VMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--------FQPG-CSIWESILRAS 525 (640)
Q Consensus 461 ~~~~~A~~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~ 525 (640)
|++++|.+++++..+.. + ..-....++.|...|.+.+++.+|.++|.+.. ..|+ ..+|..|...|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 77777777777665531 1 11113456677777777777777777776654 3333 45788999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 006580 526 AIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~ 544 (640)
...|+++.|+++.+++...
T Consensus 461 ~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999998888733
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=2.9e-06 Score=83.58 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=82.1
Q ss_pred CCChhHH--HHHHHHHHhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 480 MPGEEHY--ACIIDLLCQAGQLGKAIDITSTMP-FQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 480 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
+|+...| -.++..+-+.|+++.|..+++.+. ..|+. ..|..-...+...|+++.|..+++++.+++-+|..+-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4554444 456778889999999999999887 66653 3566667888889999999999999999998887777678
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 556 TQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+.-..+.++.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 8888899999999999999888775
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.5e-06 Score=84.56 Aligned_cols=416 Identities=12% Similarity=0.064 Sum_probs=200.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhh--cCCC
Q 006580 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGF-TFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG--KLGV 195 (640)
Q Consensus 119 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~ 195 (640)
++-+...|++++|.+...+....+ ||.. .+..=+-++.+.+.-...+..+...+....+...+ +=.+|| +.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~--fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF--FEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh--HHHHHHHHHccc
Confidence 445667788888998888888764 4332 22222222223333333332222222111111111 223333 5677
Q ss_pred hHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHH
Q 006580 196 LYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY-TISIVINACTKLRNLDKGKQVFALSVK 274 (640)
Q Consensus 196 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (640)
.++|+..++.....|..+...-.+.+.+.|++++|+++|+.+.+.+.+--.. .-..++.+-... .+ +.+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHHHh
Confidence 7777777775554454455555566677777777777777776644321111 111111111000 00 01111
Q ss_pred hCCCCchhHHHH---HHHHHHhcCCHHHHHHHHHhcC--------CCCh-----h-----hHHHHHHHHHhCCChHHHHH
Q 006580 275 VGFLSNSIVLSA---TIDLFSKCNRLEDSVRLFEQLD--------RWDY-----A-----VINVMISTYGRYGFGEVALE 333 (640)
Q Consensus 275 ~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~~~~~~a~~ 333 (640)
....| ..+|.. ....++..|++.+|+++++... ..|. . .---|.-.+...|+..+|.+
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 11122 212222 3344556677777777666551 1110 0 11123344555666666666
Q ss_pred HHHHHhhCCCCCChhhHHH---HHhhCCC-CChHHH--HHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 006580 334 LFQLMLREDIRPTEFTLSC---VLSSIPI-PPVEHG--SQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407 (640)
Q Consensus 334 ~~~~m~~~~~~p~~~t~~~---~l~~~~~-~~~~~a--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 407 (640)
++...++.. .+|...... -|-++.. .++... ...++. ....-+......+
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~-----------------------~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKS-----------------------QVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHH-----------------------HHHHhHHHHHHHH
Confidence 666666553 223221111 1111111 111110 000000 0000111111111
Q ss_pred C--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHhHHhhCCCCC-
Q 006580 408 D--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN--YGGFVDKGMLVFSAMKEEYGVMPG- 482 (640)
Q Consensus 408 ~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~A~~~~~~~~~~~~~~p~- 482 (640)
. +......|..+-.+ ..+..+.+.++....- +..|.. .+.+++..+. +...+..+.+++....+. .+-+
T Consensus 302 s~~qk~~i~~N~~lL~l-~tnk~~q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s 375 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLAL-FTNKMDQVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKS 375 (652)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchh
Confidence 1 11122222222222 1233344444333322 123333 3444444432 223577888888877663 2222
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC---
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITS--------TMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDL----QL--- 546 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p--- 546 (640)
..+.-.++......|+++.|.+++. .++ ..-.+.+...+...+.+.++.+.|..++..++.- .+
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 4456667788899999999999998 444 3445667777777888878777777777777654 12
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.-..++..++..-.+.|+-++|..+++++.+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 2223344455555677999999999999987
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=6.3e-07 Score=79.44 Aligned_cols=382 Identities=13% Similarity=0.030 Sum_probs=199.3
Q ss_pred HHHHhhhcCCChHHHHHHHhccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHH-HHHHhccC
Q 006580 185 SLIDMYGKLGVLYYAFGVFLNMEEL---DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV-INACTKLR 260 (640)
Q Consensus 185 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~ 260 (640)
+.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-+.++++-.. -|...-|..- ..++.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 3344444555566666655554432 3334455555666666666666666665542 2333322211 22334455
Q ss_pred CchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHH
Q 006580 261 NLDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDSVRLFEQLDR-WDYAVINVMISTYGRYGFGEVALELFQL 337 (640)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (640)
.+..|.++...|.+. ++... ...-.......+++..+..++++.+. .+..+.+.......+.|+++.|.+-|+.
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 555555555554332 11111 11111122344556666666666653 4444444444445566666666666666
Q ss_pred HhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCC-------------c------h---------HHHHHHHH
Q 006580 338 MLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDS-------------N------A---------VVASSLME 389 (640)
Q Consensus 338 m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~-------------~------~---------~~~~~l~~ 389 (640)
..+-+--.....|+..+..+.+++.+.|.+...++++.|+.. | + ..+|.-..
T Consensus 170 AlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 555432333445666666555566666666666666554321 1 1 11222233
Q ss_pred HHHhcCChHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 006580 390 MYAKTGSIDSSTEIFVKLDK-----RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFV 463 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 463 (640)
.+.+.++++.|.+.+-+|+. .|++|...+.-.- ..+++.+..+-+.-+... .| ...||..++-.||+..-+
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHH
Confidence 45678999999999999983 4677766554322 245566666666666654 34 346899999999999989
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCC---hHHHHHH
Q 006580 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA-GQLGKAIDITSTMPFQPG--CSIWESILRASAIYGD---VKLTENV 537 (640)
Q Consensus 464 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~---~~~a~~~ 537 (640)
+.|-.++-+-....-.-.+...|+ |++++..+ -..++|.+-++.+..... ......-++--..+++ ...+.+-
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 988888764321100011233333 34444433 366777766655430000 0011111111111221 1223334
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 538 AERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 538 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
|++.+++.- .....-++.|++..++..+++.|+.-.+-
T Consensus 406 Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 406 YDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 444444322 23446678899999999999999876654
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.1e-08 Score=91.50 Aligned_cols=233 Identities=11% Similarity=0.078 Sum_probs=182.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhC
Q 006580 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDR--WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357 (640)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~ 357 (640)
|..--+.+..+|.+.|.+.+|...|+.-.+ +-+.||-.|-+.|.+..++..|+.++.+-.+. .|-.+||..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~----- 294 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL----- 294 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh-----
Confidence 444456788999999999999999887654 56778888999999999999999999987764 676777632
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHH
Q 006580 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDV 434 (640)
Q Consensus 358 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 434 (640)
-..+.+...++.++|.++++...+ .++....++...|.-.++++.|+.+
T Consensus 295 ----------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 295 ----------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred ----------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 233445556677778888877763 3556666677788888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 006580 435 FEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG--EEHYACIIDLLCQAGQLGKAIDITSTMP-F 511 (640)
Q Consensus 435 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 511 (640)
|+++.+.|+ -+...|..+.-+|.-.+++|-++.-|++.... -..|+ ...|-.+.......|++.-|.+-|+-.. .
T Consensus 347 YRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 999999884 45667777777888888999999888887765 44454 4567778888888899999999988876 4
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 512 QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 512 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
.| +...++.|.-.-.+.|+.++|..++..+....|.-.
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 44 566889998888899999999999999988887543
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.4e-06 Score=87.80 Aligned_cols=285 Identities=14% Similarity=0.064 Sum_probs=146.7
Q ss_pred HHHhhhcCCChHHHHHHHhccCC--CCe-eeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh----c
Q 006580 186 LIDMYGKLGVLYYAFGVFLNMEE--LDI-ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT----K 258 (640)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~ 258 (640)
....+...|++++|++.++.-.. .|. .........+.+.|+.++|..+++.+.+.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34455667777777777766543 232 334455667777777777777777777654 66666555555443 1
Q ss_pred --cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 006580 259 --LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQ 336 (640)
Q Consensus 259 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 336 (640)
..+.+...++++.+...- |.......+.-.+.....+. ..+...+.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~------------------------------~~~~~yl~ 135 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFK------------------------------ERLDEYLR 135 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHH------------------------------HHHHHHHH
Confidence 123444455555554432 22221111111111101111 12223333
Q ss_pred HHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHh--------------CCCCch--HHHHHHHHHHHhcCChHH
Q 006580 337 LMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKS--------------GFDSNA--VVASSLMEMYAKTGSIDS 399 (640)
Q Consensus 337 ~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~g~~~~ 399 (640)
.+...|+++- |+.+-..+.. ........++...... .-+|+. .++.-+.+.|-..|++++
T Consensus 136 ~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 136 PQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred HHHhcCCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 3444443332 2222222222 2222222222222211 012333 233455666777777777
Q ss_pred HHHHHHhCC--CCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 400 STEIFVKLD--KRD-LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 400 A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
|.+++++.. .|+ +..|..-...+-..|++.+|.+.++..+... .-|...-+-.+..+.+.|++++|.+++....+.
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 777777665 233 4466666677777777777777777777642 233344445556667777777777777776654
Q ss_pred hCCCCChhH------H--HHHHHHHHhcCChHHHHHHHHhC
Q 006580 477 YGVMPGEEH------Y--ACIIDLLCQAGQLGKAIDITSTM 509 (640)
Q Consensus 477 ~~~~p~~~~------~--~~l~~~~~~~g~~~~A~~~~~~~ 509 (640)
+..|.... | .....+|.+.|++..|++.|..+
T Consensus 292 -~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 292 -DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred -CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 43332211 1 22345677777777777666554
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=2.2e-07 Score=88.62 Aligned_cols=186 Identities=11% Similarity=0.021 Sum_probs=125.5
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLDVFE 436 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (640)
|+.+.|...+....+.. |.++..++.+...+...|++++|...|+...+ | +...|..+..++...|++++|++.++
T Consensus 78 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 78 GLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344443333333332 44566778889999999999999999998863 4 46788888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhCC----
Q 006580 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK--AIDITSTMP---- 510 (640)
Q Consensus 437 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~---- 510 (640)
+..+. .|+..........+...++.++|...+++... ...|+... ..+.. ...|+..+ +.+.+.+..
T Consensus 157 ~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNT 229 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcH
Confidence 99984 56554222222234456789999999977654 33333322 22332 33455433 333333221
Q ss_pred -CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 006580 511 -FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553 (640)
Q Consensus 511 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 553 (640)
..| ....|..+...+...|++++|...|+++++.+|++..-+.
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 122 3468999999999999999999999999999986654444
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=6.7e-08 Score=90.53 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=107.1
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCH
Q 006580 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN----YGGFV 463 (640)
Q Consensus 388 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~ 463 (640)
..++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ....+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 34566678888888887765 45666667788889999999999999998873 4443 3344444433 23468
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHH
Q 006580 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDV-KLTENVAER 540 (640)
Q Consensus 464 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~ 540 (640)
.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+.. ..| ++.++-.++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 888888888866 445677777888888888888888888887765 344 566777777777777766 667778888
Q ss_pred HHhcCCCCh
Q 006580 541 MMDLQLPSP 549 (640)
Q Consensus 541 ~~~~~p~~~ 549 (640)
+...+|.++
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 777777764
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.6e-05 Score=80.30 Aligned_cols=356 Identities=14% Similarity=0.092 Sum_probs=179.7
Q ss_pred HHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC---
Q 006580 184 NSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLR--- 260 (640)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--- 260 (640)
-++++..|-.|+.++|-++-++ ..|......|.+.|-..|++.+|..+|.+... |...|+.|-..+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 5677888888999998888776 34667777888889999999999998877643 444444443322
Q ss_pred ------------CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------CChhh
Q 006580 261 ------------NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR--------------WDYAV 314 (640)
Q Consensus 261 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~ 314 (640)
+.-.|.+.|++. |. -...-+..|-+.|.+.+|+++-=+-.+ .|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 222333333322 11 122344567788888888765332222 24444
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhC-CCCc----hHHHHHHHH
Q 006580 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSG-FDSN----AVVASSLME 389 (640)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~ 389 (640)
.+--..-|+...++++|..++-..++ |...+..|...++.-..++-+.|.-.. -.|+ ..+...+.+
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 55555566777777777777655442 233333333322222222222221110 1111 234455666
Q ss_pred HHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHH---------H----HHHHHHCCCCCCHHHHHHHHHH
Q 006580 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLD---------V----FEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~---------~----~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
.+.+.|.+..|-+-|...-.. -..+.++.+.|+.++..- + -+-+....+..|+.+.-.++.-
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF 1228 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF 1228 (1416)
T ss_pred HHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh
Confidence 777777777776666544311 123445555555443210 0 0111222344444454444444
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHH----------HHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG-CSIWESIL----------RAS 525 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~----------~~~ 525 (640)
|.+..-++.--.+|.....- ....|..+-. ..|-+++|-+-+.++..+.+ ...++.|- ...
T Consensus 1229 YTKgqafd~LanFY~~cAqi-----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~ 1300 (1416)
T KOG3617|consen 1229 YTKGQAFDHLANFYKSCAQI-----EIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKL 1300 (1416)
T ss_pred hhcchhHHHHHHHHHHHHHh-----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333333222110 1111111111 11233444444444431111 11222221 111
Q ss_pred HH-cCChHHHHHHHHHHHhcC----C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 526 AI-YGDVKLTENVAERMMDLQ----L-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 526 ~~-~~~~~~a~~~~~~~~~~~----p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
.. ..|....+.-..-+++.- | +....|..|+..+....+|..|.+.+++|..+..
T Consensus 1301 q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1301 QIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 11 124444444444444431 1 3346788999999999999999999999988753
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=8.9e-05 Score=76.91 Aligned_cols=365 Identities=14% Similarity=0.073 Sum_probs=201.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC---------------CChhhHHHHHHHHh
Q 006580 28 FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ---------------KNCISWNICLRGLL 92 (640)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~ 92 (640)
.-+++...+++..|...+++.+..+.-.+..-|...=-.+..+++|+.... .|+...-..|.+.|
T Consensus 656 ~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~ 735 (1666)
T KOG0985|consen 656 SLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAAC 735 (1666)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHH
Confidence 446677778888888888888888777777777777677788888888764 46666777899999
Q ss_pred cCCChhHHHHHhccCCC-------------------C------------CcchH------HHHHHHHHhCCChHHHHHHH
Q 006580 93 KSDNLDTALKVFDEIPE-------------------P------------DVVSW------NSMISGYASCGYSDYALEMF 135 (640)
Q Consensus 93 ~~~~~~~A~~~~~~~~~-------------------~------------~~~~y------~~li~~~~~~~~~~~a~~~~ 135 (640)
+.|++.+..++.++-.- | |...| ...|..|.+.-++...-.+.
T Consensus 736 kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~Vv 815 (1666)
T KOG0985|consen 736 KTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVV 815 (1666)
T ss_pred hhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhh
Confidence 99999998888775430 1 11111 11233444433333333333
Q ss_pred HHHHHCCCCCChhhHHHHH-HHHh---------------chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHH
Q 006580 136 SKMQLQGVRPSGFTFSILL-STVS---------------SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199 (640)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll-~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 199 (640)
-.+..... +......++ ...+ ++..-...++..+..| ..+..++|+|...|..+++-.+-
T Consensus 816 G~LLD~dC--~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 816 GALLDVDC--SEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred hhhhcCCC--cHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHH
Confidence 33332211 112222222 2222 2333335566667776 45888999999999887654332
Q ss_pred H-H---HHhc------cCCCCee-----------------------eHHHHHHHHHhcCChhHHH-----------HHHH
Q 006580 200 F-G---VFLN------MEELDII-----------------------SWNSLISGCFNSGYGELAL-----------DQFY 235 (640)
Q Consensus 200 ~-~---~~~~------~~~~~~~-----------------------~~~~li~~~~~~~~~~~A~-----------~~~~ 235 (640)
. + .++. ..++|+. .|....+.+.+..+.+.=. .+++
T Consensus 892 fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiD 971 (1666)
T KOG0985|consen 892 FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLID 971 (1666)
T ss_pred hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHH
Confidence 1 0 1111 1112211 1222333333444433211 2233
Q ss_pred HhHHCCCC--CCcchHHHHHHHHhccCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHH--------------------
Q 006580 236 SMRYSGYS--PDEYTISIVINACTKLRNLDKGKQVFALSVKVG--FLSNSIVLSATIDLF-------------------- 291 (640)
Q Consensus 236 ~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~-------------------- 291 (640)
+..+.+++ .|+........++...+-..+-.++++.++-.. +.-+....|.|+-..
T Consensus 972 qVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa 1051 (1666)
T KOG0985|consen 972 QVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA 1051 (1666)
T ss_pred HHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc
Confidence 33333332 244455556667766666666666666554321 111222223232222
Q ss_pred -------HhcCCHHHHHHHHHhcCC-------------------------CChhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 006580 292 -------SKCNRLEDSVRLFEQLDR-------------------------WDYAVINVMISTYGRYGFGEVALELFQLML 339 (640)
Q Consensus 292 -------~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 339 (640)
...+-+++|..+|+...- ..+..|+.+..+-.+.|...+|++-|-+
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik-- 1129 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK-- 1129 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh--
Confidence 233344555555554321 1334577777777777777777766643
Q ss_pred hCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 006580 340 REDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIF 404 (640)
Q Consensus 340 ~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 404 (640)
.-|...|..++..+.+ |.++.-..++..+.+..-.|.+. +.|+-+|++.+++.+.++.+
T Consensus 1130 ----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1130 ----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred ----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 2355667777777777 77777777777777766555544 56777777777776655544
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=1.2e-06 Score=88.35 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASA 526 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 526 (640)
+..+...|...|++++|++++++..+. .|+ +..|..-...|-+.|++.+|.+.++.+. ..+ |-.+=+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344445566666666666666666542 333 4556666666666666666666666665 233 3334444455556
Q ss_pred HcCChHHHHHHHHHHHhcCC---CC------hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQL---PS------PLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p---~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+.|+.++|...+......+. .| .......+.+|.+.|++..|++.+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666654431 11 1112345666677777777766554443
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.3e-06 Score=81.49 Aligned_cols=216 Identities=10% Similarity=0.057 Sum_probs=148.1
Q ss_pred HHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC---hh-------HHHHH
Q 006580 350 LSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD---LV-------SWNTI 418 (640)
Q Consensus 350 ~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-------~~~~l 418 (640)
...+..+... .+++.+.+-+....... .++.-++....+|...|.+..+...-.+..+.. .. .+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445555555 77777777777777665 555556667777877777776665555443211 11 22223
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHhcC
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE-HYACIIDLLCQAG 497 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 497 (640)
..+|.+.++++.|+..|.+.......|+..+ +....+++........ -+.|... -...=...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4466677889999999988776545544322 2233444444443322 2333321 1122256678889
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 498 QLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 498 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
++..|+..+.++. ..| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.+++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877 455 77889999999999999999999999999999999999999888999999999999999887
Q ss_pred HhCC
Q 006580 576 RKNG 579 (640)
Q Consensus 576 ~~~~ 579 (640)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 7755
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=1e-05 Score=83.61 Aligned_cols=541 Identities=14% Similarity=0.041 Sum_probs=259.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCCh-----hhHHHHHHH
Q 006580 16 SYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNC-----ISWNICLRG 90 (640)
Q Consensus 16 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ll~~ 90 (640)
..|..|-..+..-.+...|.++|+...+.+ ..+..........|++..+++.|..+.-..-+... ..|-...-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 467777777777778888999999988876 56677788888899999999999888544444222 233345556
Q ss_pred HhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-----chhH
Q 006580 91 LLKSDNLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-----SACH 162 (640)
Q Consensus 91 ~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-----~~~~ 162 (640)
+.+.++...|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+.... .|+. +|.....+.. ....
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHH
Confidence 7788899999999988764 46678889999999999999999999988764 4543 3333333222 5555
Q ss_pred HHHHHHHHHHhCC-----CCCchhHHHHHHHhhhcCCChHHHHHHHhccCC-----------CCeeeHHHHHHHHHhcCC
Q 006580 163 GKQIHGSMIRSGL-----SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-----------LDIISWNSLISGCFNSGY 226 (640)
Q Consensus 163 a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~ 226 (640)
+...+...+.... ...-..++-.+...+.-.|-..+|.++|+.-.+ .+...|-.+-
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as-------- 720 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS-------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence 5555555443310 111122222222222223333333333333211 0111111111
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH-----hCCCCchhHHHHHHHHHHh----cC--
Q 006580 227 GELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK-----VGFLSNSIVLSATIDLFSK----CN-- 295 (640)
Q Consensus 227 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~----~g-- 295 (640)
+|..+|-... .. .|+.....++..-.-..+....-. ++-...+ ..+..+..+|-.|+.-|.+ .|
T Consensus 721 --dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 721 --DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred --HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 1222222222 01 222222222222122222220000 0000000 0111123333333333322 11
Q ss_pred --CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHH
Q 006580 296 --RLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFH 369 (640)
Q Consensus 296 --~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~ 369 (640)
+...|...+....+ .+...||+|.-. ...|.+.-|...|-+-.... +-...+|..+--.+.. .+++.|...+
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHH
Confidence 12345555554432 456667766544 44455555555554433321 2223344333333444 6777777777
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-----C---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-
Q 006580 370 SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL-----D---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLE- 440 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 440 (640)
....... |.+...+--........|+.-++..+|..- . .++..-|-....-...+|+.++-+...+++-.
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 6665543 223333322222233455555555555441 1 13333333333334455554443333222211
Q ss_pred --------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHH----HHHHHHHhcCChHHHHHHHHh
Q 006580 441 --------EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA----CIIDLLCQAGQLGKAIDITST 508 (640)
Q Consensus 441 --------~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 508 (640)
.|.+-+...|........+.+.+..|.+...++..-....-+...|+ .+...++..|.++.|..-+..
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~ 1032 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWK 1032 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcc
Confidence 12233334555555555555555555554444332111122333333 223344555666655555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 509 MPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL---PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
....-+..+...-+.. .-.++++++.+.|++++.+.. +-......++.....+|.-+.|...+-+...
T Consensus 1033 ~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1033 EWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred cchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 4322233333333322 223566666666666666622 2223344445555555666666655444433
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=8e-05 Score=74.57 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=71.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhH
Q 006580 20 QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99 (640)
Q Consensus 20 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (640)
..+.+..+...++.|..+++.+..+. .-+..|..+...|+..|+++.|.++|-+.. .++-.|..|.++|+++.
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHH
Confidence 34556677788888888888777664 233457777788888888888888887643 45566777778888888
Q ss_pred HHHHhccCCCC--CcchHHHHHHHHHhCCChHHHHHHH
Q 006580 100 ALKVFDEIPEP--DVVSWNSMISGYASCGYSDYALEMF 135 (640)
Q Consensus 100 A~~~~~~~~~~--~~~~y~~li~~~~~~~~~~~a~~~~ 135 (640)
|.++-++...| .+..|-+-..-+-..|++.+|.++|
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 77777666544 2334544444455555555554444
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=7.4e-08 Score=93.28 Aligned_cols=217 Identities=12% Similarity=0.076 Sum_probs=170.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHH
Q 006580 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLDVF 435 (640)
Q Consensus 359 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 435 (640)
.|++..|.-.|+..++.. |.+...|..|.......++-..|+..+.+..+- |......|.-.|...|.-..|++.+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 377888887887777765 556777777888888888888888888888743 5667777777899999999999999
Q ss_pred HHHHHCCCCCCHHHHHH--------HHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 436 EELLEEGLPPDRITLAA--------VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITS 507 (640)
Q Consensus 436 ~~m~~~g~~p~~~~~~~--------ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 507 (640)
+.-+... |....... .-..+.....+....++|-++....+..+|+.....|.-.|--.|.+++|..-|+
T Consensus 377 ~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 9887642 11110000 0011222333455566666666654667899999999999999999999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 508 TMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 508 ~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
.+. .+| |...||-|...++...+.++|+..|.+++++.|.-.....+|+-.|...|.|++|.+.|=.....
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 988 777 78899999999999999999999999999999999999999999999999999999988776654
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1e-05 Score=81.67 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=107.9
Q ss_pred hhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC-----------CCh-hhHHHHHHHHh
Q 006580 25 CLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-----------KNC-ISWNICLRGLL 92 (640)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~~~-~~~~~ll~~~~ 92 (640)
+..-|+.+.|.+-.+.+++. .+|..+.+++.+.++++-|.-.+-.|.+ .|. ..-..+.-...
T Consensus 738 yvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 44556666666665555433 3567777777777666666666655543 111 11112222223
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHH
Q 006580 93 KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIR 172 (640)
Q Consensus 93 ~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~ 172 (640)
+.|.+++|..++++-.+ |..|=+.|-..|.+++|+++-+.=-+-.++.+-+-|.--+.+-.+.+.|.+.|+..-.
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 45556666666555433 3333344455566666666554433322222222222223222233333333322110
Q ss_pred hCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 006580 173 SGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252 (640)
Q Consensus 173 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 252 (640)
. -..+...|. .+........+.+. |...|.-....+-..|+.+.|+.+|...++ |-++
T Consensus 887 h-----afev~rmL~------e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 887 H-----AFEVFRMLK------EYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred h-----HHHHHHHHH------hChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 0 000000000 00111111112221 223333333444445566666666555443 3444
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 253 INACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 253 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
++..|-.|+.++|.++-++ . -|....-.|.+.|-..|++.+|+.+|.+.
T Consensus 945 VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555555666665555432 1 23334444555666666666666655543
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=6.7e-07 Score=76.64 Aligned_cols=192 Identities=13% Similarity=0.020 Sum_probs=162.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYG 460 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 460 (640)
..|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+. .|+. ...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 45667899999999999999998843 4568888999999999999999999999984 5654 5777888888999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 006580 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVA 538 (640)
Q Consensus 461 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 538 (640)
|.+++|...|+.........--..+|..+.-+..+.|+++.|.+.|++.. ..| .+.....+.......|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999999999998874444446788899988999999999999999987 555 5678888999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 539 ERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 539 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
++.....+.+.......+.+-...|+-+.+-++=..+...
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999998888888888888888899999888876666553
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=6.6e-06 Score=73.16 Aligned_cols=343 Identities=11% Similarity=0.029 Sum_probs=193.3
Q ss_pred HHHHHHHHHccCCchHHHHHHhcCCCC---ChhhHHHHHHHHhcCCChhHHHHHhccCCC--CCcchHHH-HHHHHHhCC
Q 006580 53 GNRCLDLYSRFGTSDDVLQLFDEIPQK---NCISWNICLRGLLKSDNLDTALKVFDEIPE--PDVVSWNS-MISGYASCG 126 (640)
Q Consensus 53 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~y~~-li~~~~~~~ 126 (640)
+++.+..+.+..+++.|++++..-.+. +....+.+...|-+..++..|-..++++.. |...-|.. -.+.+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555555666666666666554442 333455555555566666666666665543 33222221 234445556
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhcc
Q 006580 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206 (640)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 206 (640)
.+.+|+.+...|... |+. +++.+ ..-....-..+++..+..+++..
T Consensus 93 i~ADALrV~~~~~D~---~~L-------------------~~~~l------------qLqaAIkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PAL-------------------HSRVL------------QLQAAIKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred ccHHHHHHHHHhcCC---HHH-------------------HHHHH------------HHHHHHhcccccCcchHHHHHhc
Confidence 666666666555432 110 00000 00111223467788888888888
Q ss_pred C-CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHH-
Q 006580 207 E-ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVL- 284 (640)
Q Consensus 207 ~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 284 (640)
+ +.+..+.+...-...+.|+++.|++-|+...+.|--.....|+..+. ..+.|+.+.|.+...+++++|+...+..-
T Consensus 139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 7 46666666666666788999999999988877544444556766554 44678889999999988888764322110
Q ss_pred ---HHHHHHHHhcCCH-HHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCC-CCCChhhHHHHHhhCCC
Q 006580 285 ---SATIDLFSKCNRL-EDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPI 359 (640)
Q Consensus 285 ---~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~~l~~~~~ 359 (640)
+..+++-. .|+. ..+.+ .-+..+|.-...+.+.|+++.|.+.+.+|.-+. -..|.+|...+.-.-..
T Consensus 218 Gm~tegiDvrs-vgNt~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~ 289 (459)
T KOG4340|consen 218 GMTTEGIDVRS-VGNTLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD 289 (459)
T ss_pred cceeccCchhc-ccchHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc
Confidence 00000000 0000 00000 001223444445567888888888888886432 45677777665544434
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCChHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-----DLVSWNTIMMGLTQNGRAAETLDV 434 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~ 434 (640)
+++..+..-+..+...+ |....++..++-.||++.-++-|-+++.+-... +...|+.|=......-.+++|.+-
T Consensus 290 ~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKK 368 (459)
T ss_pred CCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555566666554 455677888888999999999999988775532 334444332222233456666665
Q ss_pred HHHHH
Q 006580 435 FEELL 439 (640)
Q Consensus 435 ~~~m~ 439 (640)
++.+.
T Consensus 369 L~~La 373 (459)
T KOG4340|consen 369 LDGLA 373 (459)
T ss_pred HHHHH
Confidence 55444
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=0.00044 Score=78.18 Aligned_cols=366 Identities=14% Similarity=0.035 Sum_probs=182.9
Q ss_pred HHHHhhhcCCChHHHHHHHhccCCCCeee--HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCc
Q 006580 185 SLIDMYGKLGVLYYAFGVFLNMEELDIIS--WNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL 262 (640)
Q Consensus 185 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 262 (640)
.....+...|++.+|..........+... ...........|+++.+...++.+.......+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33445666777777776665554332111 1112233455677777777776653221122222333344455667888
Q ss_pred hHHHHHHHHHHHhCCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hhHHHHHHHHHhCC
Q 006580 263 DKGKQVFALSVKVGFL------SN--SIVLSATIDLFSKCNRLEDSVRLFEQLDR----WDY----AVINVMISTYGRYG 326 (640)
Q Consensus 263 ~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~ 326 (640)
+++...+..+.+.--. +. ......+...+...|+++.|...+++... .+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 8888888776543111 11 11122233445567777777776665432 111 12344445556667
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406 (640)
Q Consensus 327 ~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 406 (640)
++++|...+.+.....-..... .........+...+...|+++.|...+++
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~-----------------------------~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVY-----------------------------HYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcch-----------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777666666654321000000 00011223344445555666666555544
Q ss_pred CCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHH
Q 006580 407 LDK-------R----DLVSWNTIMMGLTQNGRAAETLDVFEELLEE--GLPPD--RITLAAVLLACNYGGFVDKGMLVFS 471 (640)
Q Consensus 407 ~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~ 471 (640)
... + ....+..+...+...|++++|...+++.... ...+. ..++..+.......|++++|...+.
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 321 0 1112333444455567777777766665442 11121 1233334445566777777777766
Q ss_pred HhHHhhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 006580 472 AMKEEYGVMPGEEHY-----ACIIDLLCQAGQLGKAIDITSTMPF-Q-PGC----SIWESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 472 ~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
..............+ ...+..+...|+.+.|.+.+..... . ... ..+..+..++...|+.++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654321111110001 0112334456777777777665541 1 111 1134455566677777777777777
Q ss_pred HHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 541 MMDLQL------PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 541 ~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.+... ....++..++.++.+.|+.++|...+.+..+..
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 766511 122355566777777777777777777776543
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=1.1e-05 Score=73.23 Aligned_cols=315 Identities=14% Similarity=0.098 Sum_probs=172.6
Q ss_pred CchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHH---HHHHhcCChhHHHHHHHHhHHCCCCCCcchHH-HHH
Q 006580 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLI---SGCFNSGYGELALDQFYSMRYSGYSPDEYTIS-IVI 253 (640)
Q Consensus 178 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-~ll 253 (640)
.++.-.-.|.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-+.+..+ .+||-..-. .-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 34444556667777788899999998888888887777765 467788888888888888776 567754322 223
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHH
Q 006580 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALE 333 (640)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 333 (640)
..+.+.|.++.|+.-|+..++.... ..+. ..++.+.-..++-. .....+..+...|+...|+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s--~~~~---~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS--NGLV---LEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC--cchh---HHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHH
Confidence 3466788888888888888776432 1111 11111111111111 11223445566777788888
Q ss_pred HHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CC
Q 006580 334 LFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KR 410 (640)
Q Consensus 334 ~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 410 (640)
....+.+. .|-...+ +..-..+|...|++..|..-++... ..
T Consensus 177 ~i~~llEi--~~Wda~l---------------------------------~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 177 MITHLLEI--QPWDASL---------------------------------RQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred HHHHHHhc--CcchhHH---------------------------------HHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 87777763 3333322 2222333344444444433332222 22
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HH---HHH---------HHHHhccCCHHHHHHHHHHhHHhh
Q 006580 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TL---AAV---------LLACNYGGFVDKGMLVFSAMKEEY 477 (640)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~---~~l---------l~~~~~~~~~~~A~~~~~~~~~~~ 477 (640)
+...+-.+-..+...|+.+.++...++-++ +.||.. +| -.+ +......++|.++++..+...+.
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~- 298 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN- 298 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 333333333334444444444444444433 233332 11 000 01122345555555555555543
Q ss_pred CCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 006580 478 GVMPG-----EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550 (640)
Q Consensus 478 ~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 550 (640)
.|. ...+..+-.++...|++.+|++...+.. +.| |+.++.--..+|.-...++.|+.-|+++.+.+++|..
T Consensus 299 --ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 299 --EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred --CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 233 1123334455566677777777777766 555 3667777777777777778888888888777776654
Q ss_pred H
Q 006580 551 P 551 (640)
Q Consensus 551 ~ 551 (640)
+
T Consensus 377 ~ 377 (504)
T KOG0624|consen 377 A 377 (504)
T ss_pred H
Confidence 4
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=1.3e-05 Score=72.81 Aligned_cols=189 Identities=6% Similarity=0.026 Sum_probs=138.9
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006580 388 MEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464 (640)
Q Consensus 388 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 464 (640)
+..+.-.|+...|......+. ..|...|..-..+|...|++..|+.-++..-+.. .-+..++--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 344556788888888887776 3578888888999999999999998888777642 333445556666777889988
Q ss_pred HHHHHHHHhHHhhCCCCChh----HHHHH---------HHHHHhcCChHHHHHHHHhCC-CCCCH-----HHHHHHHHHH
Q 006580 465 KGMLVFSAMKEEYGVMPGEE----HYACI---------IDLLCQAGQLGKAIDITSTMP-FQPGC-----SIWESILRAS 525 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~----~~~~l---------~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~~l~~~~ 525 (640)
.++...++.. .+.|+.. .|..| +....+.++|.++++-.+... ..|.. ..+..+-..+
T Consensus 241 ~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 241 NSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 8888877766 4566633 22222 122345677777777766654 45541 2233444455
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
...+++.+|++.-.++++.+|+|..++..-+.+|.-...|++|+.-++...+.+.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6678999999999999999999999999999999999999999999998877554
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-05 Score=77.61 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=117.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDK 465 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~ 465 (640)
+..+|.+.++++.|...|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445777778888888888875522111 1112233445555555554444 344432 12222456778899999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006580 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMD 543 (640)
Q Consensus 466 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 543 (640)
|+..|.++..+ .+-|...|+...-+|.+.|.+..|++-.+... ..| ....|.--..++.-..+++.|.+.|++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998875 25567788888999999999999988777665 444 344455455555566789999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 544 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
.+|.+......+..++..........++.+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 999998888877777765433333333333
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=8.3e-07 Score=78.50 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=115.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 006580 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499 (640)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 499 (640)
..|...|+++.+....+.+.. |. ..+...++.++++..++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 457788888776444322211 11 012236677788877877765 3466788899999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 500 GKAIDITSTMP-FQP-GCSIWESILRAS-AIYGD--VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
++|...+++.. ..| +...+..+..++ ...|+ .++|.++++++++.+|.++..+..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999887 556 777888888864 67676 59999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 006580 575 MRKNGI 580 (640)
Q Consensus 575 m~~~~~ 580 (640)
+.+...
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 988764
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=9.8e-08 Score=89.43 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=126.4
Q ss_pred CChHHHHHHHHhCC-CC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 006580 395 GSIDSSTEIFVKLD-KR----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 395 g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
++-+.+..-+++.. .+ +..........+...|++++|++++++- .+.......+..+.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555554443 22 2222222234566679999999988643 3556677788999999999999999
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHH----HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006580 470 FSAMKEEYGVMPGEEHYACIIDLL----CQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMD 543 (640)
Q Consensus 470 ~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 543 (640)
++.|.+ ...| .+...+..++ .-.+.+.+|..+|+++. ..+++.+++.+..++...|++++|+++++++++
T Consensus 154 l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999874 3334 3344444443 33347999999999987 567889999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCC
Q 006580 544 LQLPSPLPYSLLTQAYAMRGRW-EAIVRVKKVMRKNG 579 (640)
Q Consensus 544 ~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~ 579 (640)
.+|.++.+..+++-+....|+. +.+.+++..++...
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 9999999999999998999988 67888998887743
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=3.3e-05 Score=76.69 Aligned_cols=198 Identities=11% Similarity=-0.021 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPDR--ITLAAVLL 455 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~ 455 (640)
.....+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3444556677888888888888888762 3456677788888888999999999888877421 1232 23456777
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHhCC-CCCC---HHHHHHHHHHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHY-A--CIIDLLCQAGQLGKAIDI---TSTMP-FQPG---CSIWESILRAS 525 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~~~---~~~~~~l~~~~ 525 (640)
.+...|++++|..++++........+..... . .++..+...|....+.+. ..... ..|. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 7888899999999998875321111222111 1 223333344432222222 11111 1111 12222456677
Q ss_pred HHcCChHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 526 AIYGDVKLTENVAERMMDLQLP---------SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|+.+.|..+++.+....-. ........+.++...|++++|.+.+......+
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7888999999999988765211 23445567778889999999999999887654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.1e-06 Score=81.31 Aligned_cols=180 Identities=12% Similarity=0.027 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-h---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----H
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RD-L---VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI----T 449 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~ 449 (640)
....+..+...+.+.|+++.|...|+++.. |+ . ..+..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344445555666666666666666665542 21 1 24455566666666666666666666653 23211 2
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 006580 450 LAAVLLACNYG--------GFVDKGMLVFSAMKEEYGVMPGE-EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWES 520 (640)
Q Consensus 450 ~~~ll~~~~~~--------~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 520 (640)
+..+..++... |++++|.+.++.+.+. .|+. ..+..+.... ..... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~---~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNR---L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHH---H--------HHHHHH
Confidence 33333334332 4566666666666543 2222 1111111100 00000 0 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 521 ILRASAIYGDVKLTENVAERMMDLQLPS---PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...+...|+++.|...++++++..|.+ +..+..++.++.+.|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5567888999999999999999997654 5789999999999999999999999887654
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=6.2e-07 Score=74.93 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
+..+...+...|++++|...|+... ..| +...|..+..++...|++++|...|+++++++|.++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4455666777777777777777765 444 66777777777888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhCC
Q 006580 564 RWEAIVRVKKVMRKNG 579 (640)
Q Consensus 564 ~~~~a~~~~~~m~~~~ 579 (640)
++++|...++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888887776654
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=2.1e-06 Score=91.50 Aligned_cols=201 Identities=12% Similarity=0.102 Sum_probs=171.7
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--------RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 449 (640)
|.+...|-..|......++.++|++++++... .-...|.+++..-...|.-+...++|+++.+- --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 45566777888888999999999999988773 12357888888888888888999999999883 223356
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP---GCSIWESILRAS 525 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 525 (640)
|..|...|.+.+++++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++. .-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999766 667789999999999999999999998876 333 455677777888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 582 (640)
.+.||.+++..+|+..+...|.-...|+.+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999988644
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=7.8e-07 Score=74.32 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=100.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 006580 433 DVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F 511 (640)
Q Consensus 433 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 511 (640)
.++++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|+... .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666665 45654 44566777889999999999998875 334567788889999999999999999999987 4
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 512 QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 512 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
.| ++..+..+..++...|++++|...++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 55 788999999999999999999999999999999999999887766553
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=0.00028 Score=73.51 Aligned_cols=172 Identities=17% Similarity=0.070 Sum_probs=109.5
Q ss_pred CchHHHHHHhcCCCCCh---hhHHHHHHHHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 006580 65 TSDDVLQLFDEIPQKNC---ISWNICLRGLLKSDNLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKM 138 (640)
Q Consensus 65 ~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m 138 (640)
+...|...|=+..+.|+ ..|..|...|+...+...|.+.|+...+ .+...+-.....|++..+++.|..+.-.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 35555555544444332 3677777777777777777777776654 34556667777777777777777772222
Q ss_pred HHCCCCCChhhHHHHHHHHh-----chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeee
Q 006580 139 QLQGVRPSGFTFSILLSTVS-----SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIIS 213 (640)
Q Consensus 139 ~~~g~~p~~~t~~~ll~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 213 (640)
-+. -+.-...++.+..+.. +...+..-|+...+. .|.|...|..|..+|.++|++..|.++|.....-++..
T Consensus 553 ~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 111 1111222333333333 455566666666666 68899999999999999999999999997776433332
Q ss_pred HHH---HHHHHHhcCChhHHHHHHHHhHH
Q 006580 214 WNS---LISGCFNSGYGELALDQFYSMRY 239 (640)
Q Consensus 214 ~~~---li~~~~~~~~~~~A~~~~~~m~~ 239 (640)
+.. .....+..|.+++|++.+.....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 221 22344667889999888887754
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=9.4e-07 Score=72.19 Aligned_cols=118 Identities=7% Similarity=0.004 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
....-.+...+...|++++|.++|+-.. ..| +...|-.|...|...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3344556667788999999999999876 566 77889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 006580 561 MRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 623 (640)
..|+.+.|++.|+...... ..+|+..++..+.+..++.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887743 144666666666665665554
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=0.0001 Score=73.10 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=134.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHH---HHHHHHhcCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASS---LMEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLD 433 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 433 (640)
|+.+.+..+++.+.+.. |.+...+.. +.......+..+.+.+.+..... | .......+...+...|++++|..
T Consensus 57 g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 135 (355)
T cd05804 57 GDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEE 135 (355)
T ss_pred CCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666666666555542 333333221 11112224555566666655332 2 22344455667889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006580 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE--EHYACIIDLLCQAGQLGKAIDITSTMP- 510 (640)
Q Consensus 434 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~- 510 (640)
.+++..+.. +.+...+..+...+...|++++|...+++........|+. ..|..+...+...|++++|...+++..
T Consensus 136 ~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 136 AARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999953 3345677788888999999999999999887642222332 346678889999999999999999975
Q ss_pred CCC---CHHHH-H--HHHHHHHHcCChHHHHHH---HHHHHhcCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 511 FQP---GCSIW-E--SILRASAIYGDVKLTENV---AERMMDLQLPS--PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 511 ~~~---~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..| ..... + .++.-+...|..+.+.+. ........|.. ...-...+.++...|+.++|...++.+....
T Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 215 PSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred cccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 223 12111 1 223333444544444333 22211111221 2222367778889999999999999987644
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00032 Score=79.23 Aligned_cols=328 Identities=8% Similarity=-0.080 Sum_probs=196.7
Q ss_pred HhhhcCCChHHHHHHHhccCC----CCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCC------CCCcc--hHHHHHHH
Q 006580 188 DMYGKLGVLYYAFGVFLNMEE----LDIISWNSLISGCFNSGYGELALDQFYSMRYSGY------SPDEY--TISIVINA 255 (640)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~ 255 (640)
......|+.+.+...++.+.. .+..........+...|++++|...+......-- .+... ....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344566788888888877741 2333334445556778999999999987754211 11111 11222234
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhhHHHHHHHH
Q 006580 256 CTKLRNLDKGKQVFALSVKVGFLSNS----IVLSATIDLFSKCNRLEDSVRLFEQLDR-------WD--YAVINVMISTY 322 (640)
Q Consensus 256 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~ 322 (640)
+...|+++.|...++...+.-...+. ...+.+...+...|+++.|...+++... +. ..++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56789999999999988764212221 2345666778889999999998887653 11 12345566677
Q ss_pred HhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhcCChHH
Q 006580 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFD---SNAVVASSLMEMYAKTGSIDS 399 (640)
Q Consensus 323 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 399 (640)
...|++++|...+++..... ...+.. .....+..+...+...|++++
T Consensus 542 ~~~G~~~~A~~~~~~al~~~------------------------------~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLI------------------------------EEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHH------------------------------HHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88899999988887765420 000000 011122334445555677777
Q ss_pred HHHHHHhCCC------C--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCH--HHH--HHHHHHHhccCCHHH
Q 006580 400 STEIFVKLDK------R--DLVSWNTIMMGLTQNGRAAETLDVFEELLEEG--LPPDR--ITL--AAVLLACNYGGFVDK 465 (640)
Q Consensus 400 A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~--~~~--~~ll~~~~~~~~~~~ 465 (640)
|...+.+... + ....+..+...+...|++++|...+++..... ..... ... ...+..+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 7766665531 1 12234445566777888888888887775421 11111 010 111233445788888
Q ss_pred HHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCChHHH
Q 006580 466 GMLVFSAMKEEYGVMPG---EEHYACIIDLLCQAGQLGKAIDITSTMP-------FQP-GCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 466 A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a 534 (640)
|...+...... ..... ...+..+..++...|+.++|...+++.. ..+ ...++..+..++...|+.++|
T Consensus 672 A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 672 AANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887665431 11111 1113456677888899999988888765 111 123566677788889999999
Q ss_pred HHHHHHHHhcCC
Q 006580 535 ENVAERMMDLQL 546 (640)
Q Consensus 535 ~~~~~~~~~~~p 546 (640)
...+.++++...
T Consensus 751 ~~~L~~Al~la~ 762 (903)
T PRK04841 751 QRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHhC
Confidence 999999998844
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.8e-05 Score=79.24 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=111.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 464 (640)
.+.+|+..|+..+|..+...-. .|+...|..+........-+++|.++.+..... +-..+.....+.++++
T Consensus 430 vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 430 VILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHH
Confidence 3344444444444444443322 234444444444433333455555555443221 1111111223356777
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006580 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMM 542 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 542 (640)
++.+.|+.-.+. -+....+|-.+.-+..+.+++..|.+.|.... ..| +...||.+-.+|.+.++-.+|...+++++
T Consensus 503 ~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 503 EADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 777777655442 12234566666666677777777777777765 566 45688888888888888888888888888
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 543 DLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 543 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+-+-.+..+|.+.+-...+-|.|++|.+.+.++.+.
T Consensus 581 Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 581 KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888777888888888888888888888888887654
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1.2e-05 Score=71.27 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=121.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A 466 (640)
-+-.|...|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3467888898887755544333221 01223667788888888888753 55667888888999999999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006580 467 MLVFSAMKEEYGVMPGEEHYACIIDLL-CQAGQ--LGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERM 541 (640)
Q Consensus 467 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 541 (640)
...|++..+. .+.+...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|...++++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988863 344677788888864 67787 599999999987 556 7789999999999999999999999999
Q ss_pred HhcCCCChhHHHH
Q 006580 542 MDLQLPSPLPYSL 554 (640)
Q Consensus 542 ~~~~p~~~~~~~~ 554 (640)
++..|++..-+..
T Consensus 171 L~l~~~~~~r~~~ 183 (198)
T PRK10370 171 LDLNSPRVNRTQL 183 (198)
T ss_pred HhhCCCCccHHHH
Confidence 9999977655443
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=4.5e-06 Score=83.45 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=161.8
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006580 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455 (640)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 455 (640)
+.+|-...-..+.+.+.+.|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666677778889999999999999999985 4677788899999999999999988887 4899999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 533 (640)
.....--+++|+++.+....+ .-..+.....+.++++++.+.|+.-. ..| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876543 11122233345789999999998765 555 78899999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 534 TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 534 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
|...|-..+.++|++...|+++..+|.+.|+-.+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988763
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=1.2e-05 Score=84.43 Aligned_cols=159 Identities=12% Similarity=0.021 Sum_probs=109.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 006580 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489 (640)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 489 (640)
++..+-.|.....+.|++++|..+++...+ +.|+.. ....+...+.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466777777777788888888888888877 466664 566667777788888888888887765 333445566677
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 567 (640)
..++.+.|++++|..+|+++. ..| +..++-.+..++...|+.++|...|+++++...+-...|+.++ ++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 777788888888888888776 344 3667777777888888888888888888877655555555442 33333
Q ss_pred HHHHHHHHHhCC
Q 006580 568 IVRVKKVMRKNG 579 (640)
Q Consensus 568 a~~~~~~m~~~~ 579 (640)
-..+++.+.-.+
T Consensus 235 ~~~~~~~~~~~~ 246 (694)
T PRK15179 235 DLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHcCccc
Confidence 444555554333
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=8.7e-06 Score=71.61 Aligned_cols=126 Identities=14% Similarity=0.115 Sum_probs=69.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYG 529 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 529 (640)
.+-..+...|+-+....+...... ..+.+......++....+.|++.+|+..+.+.. .++|...|+.+..+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334444455555555555444332 222233344445555566666666666665554 3335556666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.+.|...|.+++++.|.++.++++|+..|.-.|+++.|..++......+
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 66666666666666666666666666666666666666666665555443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.8e-05 Score=69.64 Aligned_cols=155 Identities=17% Similarity=0.108 Sum_probs=123.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 006580 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495 (640)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 495 (640)
..+-..+...|+-+....+..+.... -+-|............+.|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 55566777778888777777775542 123334555577778888999999999988876 667888889999999999
Q ss_pred cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 496 AGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 496 ~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
.|++++|..-|.+.. ..| ++...+.+...+.-.|+++.|..++..+....+.+..+-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999988887776 444 677889999999999999999999999988888888888899989999999999887754
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.9e-07 Score=55.15 Aligned_cols=33 Identities=21% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006580 276 GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308 (640)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 308 (640)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777776663
No 119
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=5.2e-05 Score=72.23 Aligned_cols=183 Identities=9% Similarity=0.037 Sum_probs=128.5
Q ss_pred HHhcC-ChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006580 391 YAKTG-SIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRA--AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464 (640)
Q Consensus 391 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 464 (640)
+...| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|.....++...|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33445 46777777777663 3445566554445555553 67888888888742 345568888888888889999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc----CCh
Q 006580 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA---GQL----GKAIDITSTMP-FQP-GCSIWESILRASAIY----GDV 531 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~----~~~ 531 (640)
++++.++++.+. + +-+...|+.....+.+. |.. ++++++..++. ..| |...|+.+...+... ++.
T Consensus 160 eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 999999998875 3 33455666665555544 222 45666665554 555 788999998888773 345
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 006580 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMRG------------------RWEAIVRVKKVMR 576 (640)
Q Consensus 532 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 576 (640)
.+|.+...+++..+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67989999998999999999999999998642 2367888888873
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00011 Score=64.88 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=106.1
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006580 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446 (640)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 446 (640)
.+.+.+.......+......-...|++.|++++|++.......-..... =...+.+..+.+-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3344444444444433333344567778888888887777332222222 234455667778888888888762 34
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 006580 447 RITLAAVLLACNY----GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWES 520 (640)
Q Consensus 447 ~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 520 (640)
..|.+.|..++.+ .+.+..|.-+|++|.+ +.+|+..+.+....++...|++++|..++++.. ...++.++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5566666665543 3457777777777765 456777777777777777777777777777765 2335666655
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHHhcCCCCh
Q 006580 521 ILRASAIYGD-VKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 521 l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~ 549 (640)
++-.....|. .+-..+.+.++....|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 5555555553 3444566666666666553
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.9e-07 Score=55.12 Aligned_cols=32 Identities=31% Similarity=0.629 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006580 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509 (640)
Q Consensus 478 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (640)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.0016 Score=63.55 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=50.8
Q ss_pred CCchhhHHHHHHHHHccCCchHHHHHHhcCCC--C-ChhhHHHHHHHHhcCCChhHHHHHhccCCC--CCcchHHHHHH
Q 006580 47 NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ--K-NCISWNICLRGLLKSDNLDTALKVFDEIPE--PDVVSWNSMIS 120 (640)
Q Consensus 47 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~y~~li~ 120 (640)
+-|...|+.|+.-+.. ..++++++.++++.. | .+..|..-+..-.++++++..+++|.+... -+...|..-|.
T Consensus 17 P~di~sw~~lire~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 5677788888886544 488888888888765 2 445677778888888888888888876542 45555555444
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=8.8e-05 Score=64.85 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDK--RD---LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 459 (640)
..++-+...+|+.+.|...++.+.. |. +.-... .-+-..|++++|+++++.+.+.. +.|.+++-.=+...-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344444556666666666666542 11 111111 12334677888888888888764 4455566655555566
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC---ChHHH
Q 006580 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYG---DVKLT 534 (640)
Q Consensus 460 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a 534 (640)
.|+.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.=-++++. ..| ++..+..+...+...| +...+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6777778777777776 556778888888888888888888888888876 566 5556666665554444 67778
Q ss_pred HHHHHHHHhcCCCChhHHHHH
Q 006580 535 ENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l 555 (640)
.++|.+++++.|.+...+..+
T Consensus 211 rkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHH
Confidence 888888888887665554443
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3.4e-05 Score=67.33 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 492 (640)
.|..++-+....|+.+.|...++++... + |.+. .-..-..-+-..|++++|+++++.+.++ -+.|..++..=+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555666777889999999999999986 3 5443 2222222345678999999999999985 36667777777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChHH
Q 006580 493 LCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG---RWEA 567 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 567 (640)
.-..|+.-+|++-+.+.. +..|...|..|...|...|++++|.-.+++++-..|.++..+..+++.+.-.| +..-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888889988887776 67799999999999999999999999999999999999999999999988776 4566
Q ss_pred HHHHHHHHHhCCC
Q 006580 568 IVRVKKVMRKNGI 580 (640)
Q Consensus 568 a~~~~~~m~~~~~ 580 (640)
|.+++.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7788888877665
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=5.8e-06 Score=68.85 Aligned_cols=96 Identities=14% Similarity=0.225 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
.....+...+...|++++|.+.++.+. ..| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445566677777888888888887765 334 677888888888888999999999999999999888999999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 006580 562 RGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~ 579 (640)
.|++++|...++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999998887754
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=7.2e-05 Score=78.81 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=109.3
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 006580 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAA 452 (640)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ 452 (640)
.+.++..+..|.....+.|.+++|..+++... .| +...+..+...+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45667778888888888999999999998887 34 4556777888888899999999999988884 56654 5556
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 006580 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESIL 522 (640)
Q Consensus 453 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 522 (640)
+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++.. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66778888999999999998886 233446778888888889999999999888876 455555555444
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=9.6e-05 Score=72.33 Aligned_cols=215 Identities=15% Similarity=0.190 Sum_probs=150.4
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHH
Q 006580 256 CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVAL 332 (640)
Q Consensus 256 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 332 (640)
+.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|..+.-+|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456777888888888887775 33667788888888888888888888877765 35556667777888888888888
Q ss_pred HHHHHHhhCCCC--------CChhhHHHHHhhCCC-CChHHHHHHH-HHHHHhCCCCchHHHHHHHHHHHhcCChHHHHH
Q 006580 333 ELFQLMLREDIR--------PTEFTLSCVLSSIPI-PPVEHGSQFH-SMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402 (640)
Q Consensus 333 ~~~~~m~~~~~~--------p~~~t~~~~l~~~~~-~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 402 (640)
..|+.-+....+ ++..+-.. ..+.. ..+....++| +.....+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888877553210 00000000 11122 2333444444 444455555777788888888888899999999
Q ss_pred HHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 403 IFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 403 ~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
.|+... +| |...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998876 34 677899999888888889999999999888 678764 444555578888999988887766543
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=2.6e-05 Score=72.17 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=120.3
Q ss_pred hhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-hh---HHHH
Q 006580 348 FTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSN---AVVASSLMEMYAKTGSIDSSTEIFVKLDK--RD-LV---SWNT 417 (640)
Q Consensus 348 ~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~~ 417 (640)
..+......+.. |+.+.|...++.+.... +.+ ...+..+..++.+.|++++|...++++.+ |+ .. .+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344444445555 99999999999988764 222 24567788899999999999999999873 32 22 4555
Q ss_pred HHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 006580 418 IMMGLTQN--------GRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488 (640)
Q Consensus 418 li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ 488 (640)
+..++... |++++|.+.++++... .|+.. ....+... .. . .... . .....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HHHHH
Confidence 55566554 7889999999999884 55543 22111111 00 0 0000 0 01224
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-F---QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
+...+.+.|++++|...+++.. . .| ....+..+..++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677889999999999888875 2 23 356888999999999999999998888776654
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=1e-05 Score=78.51 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=100.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAI 527 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 527 (640)
...|+..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|.+++.+.. ..| +...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345556666778888888888888765 244 44457777777888888888888876 344 77778888888999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998774
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00017 Score=69.37 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=87.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCC
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAA-VLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQ 498 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 498 (640)
.+...|++++|+..++.+... .|+...|.. ....+...++.++|.+.++++... .|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 445567777777777777664 455544443 345666777777777777776643 344 4445556677777777
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 499 LGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 499 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+.+|+.+++... .+.|+..|..|..+|...|+..++... .+..|+-.|+|++|...+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777665 333667777777777777766555443 3345666777777777777776
Q ss_pred hCC
Q 006580 577 KNG 579 (640)
Q Consensus 577 ~~~ 579 (640)
++.
T Consensus 453 ~~~ 455 (484)
T COG4783 453 QQV 455 (484)
T ss_pred Hhc
Confidence 654
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0037 Score=61.06 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=59.8
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHh
Q 006580 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189 (640)
Q Consensus 110 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 189 (640)
-|+.+|+.||+-+-.+ .++++.+.++++... +|.....|..-+..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~----------------------------------FP~s~r~W~~yi~~ 62 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV----------------------------------FPSSPRAWKLYIER 62 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc----------------------------------CCCCcHHHHHHHHH
Confidence 3677788888765555 788888888888765 78888888899999
Q ss_pred hhcCCChHHHHHHHhccCC--CCeeeHHHHHHHH
Q 006580 190 YGKLGVLYYAFGVFLNMEE--LDIISWNSLISGC 221 (640)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 221 (640)
-.+..+++..+++|.+... -++..|..-|.--
T Consensus 63 El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 63 ELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 9999999999999998874 3667777766543
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0064 Score=63.20 Aligned_cols=506 Identities=12% Similarity=0.065 Sum_probs=245.4
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHH--HccCCchHHHHHHhcCCC---CChhhHHHHHHHHhcCCChhHH
Q 006580 26 LSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLY--SRFGTSDDVLQLFDEIPQ---KNCISWNICLRGLLKSDNLDTA 100 (640)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A 100 (640)
...+.+..|.+-.+.+.+.. |+. .|...+.++ .+.|+.++|..+++.... .|..+...+-..|.+.++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34577888888888887764 333 244444444 477888888888887654 3556777888888888888888
Q ss_pred HHHhccCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-------------chhHHHH
Q 006580 101 LKVFDEIPE--PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-------------SACHGKQ 165 (640)
Q Consensus 101 ~~~~~~~~~--~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------------~~~~a~~ 165 (640)
..+++...+ |+......+..+|+|.+++.+-.+.--+|.+ ..+-+.+.|-++++... -...|..
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 888888875 4444444555667777776654444333333 22334455555554443 1233444
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccC-----CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHC
Q 006580 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-----ELDIISWNSLISGCFNSGYGELALDQFYSMRYS 240 (640)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 240 (640)
..+.+++.++...+..-...-...+...|++++|..++..-. .-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555443111122222222333445566666666662211 112222334445555666666666666666655
Q ss_pred CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHH
Q 006580 241 GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVINVMI 319 (640)
Q Consensus 241 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li 319 (640)
| +|. |.+.+.. ++ ++++....++... .+...+..+...+..++.... .-.+|-+-+
T Consensus 256 ~--~Dd--y~~~~~s------------v~-klLe~~~~~~a~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~l 312 (932)
T KOG2053|consen 256 G--NDD--YKIYTDS------------VF-KLLELLNKEPAEA------AHSLSKSLDECIEKAQKNIGSKSRGPYLARL 312 (932)
T ss_pred C--Ccc--hHHHHHH------------HH-HHHHhcccccchh------hhhhhhhHHHHHHHHHHhhcccccCcHHHHH
Confidence 4 332 2222221 11 1111110111100 011112222222222222211 111222222
Q ss_pred HHH---HhCCChHHHHHHHHHHhhCCCCC----Ch---------hhHHHHHhhCCC--CChHHHHHHHHHHHHhCCCCch
Q 006580 320 STY---GRYGFGEVALELFQLMLREDIRP----TE---------FTLSCVLSSIPI--PPVEHGSQFHSMAIKSGFDSNA 381 (640)
Q Consensus 320 ~~~---~~~~~~~~a~~~~~~m~~~~~~p----~~---------~t~~~~l~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 381 (640)
... -.-|+.+++...|-+-. |-.| |. .-...++..+.. ++.....+.+.+-
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h--------- 381 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQH--------- 381 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHH---------
Confidence 222 23355555444332211 1111 11 111222222222 2222222211111
Q ss_pred HHHHHHHHHHHhcCC-----hHHHHHHHHhC----CC---------CC------h---hHHHHHHHHHHhCCChH---HH
Q 006580 382 VVASSLMEMYAKTGS-----IDSSTEIFVKL----DK---------RD------L---VSWNTIMMGLTQNGRAA---ET 431 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~-----~~~A~~~~~~~----~~---------~~------~---~~~~~li~~~~~~g~~~---~a 431 (640)
...+..-.-.|. -+.-..++.+. .+ |+ . .+-+.|+..+.+.++.. +|
T Consensus 382 ---~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~ea 458 (932)
T KOG2053|consen 382 ---LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEA 458 (932)
T ss_pred ---HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 001111111111 11111111111 11 11 1 14567778888888765 34
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006580 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP- 510 (640)
Q Consensus 432 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 510 (640)
+-+++.-... -+-|..+-..+++.|+-.|-...|.+.|+.+--+ +++.|...|-. ...+...|++..+...+....
T Consensus 459 I~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 459 ITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHHH-HHHHHhcccchhHHHHHHHHHH
Confidence 4455554443 1334456667788899889999999999988766 77766655433 344566778777777776654
Q ss_pred -CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 511 -FQPGC-SIWESILRASAIYGDVKLTENVAERMMDLQL----PSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 511 -~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+..+. .+-.....+| +.|.+.+..++..-=..+.- -....=+...+..+..++.++-...++.|.
T Consensus 536 fy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 536 FYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 12111 1223333344 56766666555432222211 111223356667777888888888887776
No 133
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00014 Score=69.38 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=139.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNG-RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 462 (640)
+-..+...+..++|+.+..++.+. +...|+.-...+...| ++++++..++++.+.. +-+..+++.....+.+.|.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 334455567888899888887743 4446665556666667 5799999999999853 2333456555444555555
Q ss_pred --HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---CC----h
Q 006580 463 --VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIY---GD----V 531 (640)
Q Consensus 463 --~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~----~ 531 (640)
.+++..+++++.+. -+-+...|.....++.+.|+++++++.++++. ..| +...|+.....+... |. .
T Consensus 122 ~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 36788888888763 34567788888889999999999999999987 344 778888887766554 22 3
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhc----CChHHHHHHHHHHHhCC
Q 006580 532 KLTENVAERMMDLQLPSPLPYSLLTQAYAMR----GRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 532 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~ 579 (640)
+..+....++++.+|.|..+|..+..++... ++..+|.++.......+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 5788888999999999999999999999873 45567888887766544
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00023 Score=76.67 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=167.6
Q ss_pred hhHHHHHhhCCC-CChHHHHHHHHHHHHh-CCCC---chHHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-hhHHHHHHH
Q 006580 348 FTLSCVLSSIPI-PPVEHGSQFHSMAIKS-GFDS---NAVVASSLMEMYAKTGSIDSSTEIFVKLDKR-D-LVSWNTIMM 420 (640)
Q Consensus 348 ~t~~~~l~~~~~-~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 420 (640)
..|...|..... ++++.|+.+.+++... ++.- -..+|.++++.-..-|.-+...++|++..+- | ...|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 345555555555 7777777777666643 1111 1335667777777778888889999988742 3 457888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 500 (640)
.|.+.++.++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+...-.-........+.+-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 999999999999999999986 4556678889999999999999999999988763111113455666778888999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCChh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 501 KAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPL-PYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 501 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
.+..+|+... .+.-...|+.++..-.++|+.+.+..+|++++.+. |.... .|...+..=-..|+-+.++.+-.++
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 9999999987 44477899999999999999999999999999984 44433 3444444444557766665554444
Q ss_pred H
Q 006580 576 R 576 (640)
Q Consensus 576 ~ 576 (640)
.
T Consensus 1698 ~ 1698 (1710)
T KOG1070|consen 1698 K 1698 (1710)
T ss_pred H
Confidence 3
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=0.00011 Score=70.51 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=109.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG-CSIWESILRASAI 527 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~ 527 (640)
|..-+ .+...|++++|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+
T Consensus 310 YG~A~-~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRAL-QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHH-HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 44333 34567899999999999887 445566667777899999999999999999988 6775 6677889999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.|++.+|+.+++.....+|.++..|..|+.+|..+|+..++.....+.....
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999888776543
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.00026 Score=75.49 Aligned_cols=149 Identities=9% Similarity=0.058 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 458 (640)
..+..+..+|-+.|+.++|..+++++.+ .|+...|.+...|... +.++|++++.+.... +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 3445566666666777777777666652 3555666666666666 666666666666553 34
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVA 538 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 538 (640)
..+++..+.++|.++.. ..+.+...+..+.+.....-. ...-..++-.+...|...++++++..++
T Consensus 181 ~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE------------FTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc------------cchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44566666666666664 222222232222222211100 1223345555666777788889999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHH
Q 006580 539 ERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 539 ~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
+.+++.+|.|..+...++.+|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999988888888887776
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.00058 Score=72.93 Aligned_cols=236 Identities=12% Similarity=0.067 Sum_probs=156.1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHh
Q 006580 110 PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDM 189 (640)
Q Consensus 110 ~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 189 (640)
.+...+..|+..+...+++++|.++.+...+. .|+ ....|-.+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~--------------------------------~i~~yy~~G~l 74 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKK--------------------------------SISALYISGIL 74 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCc--------------------------------ceehHHHHHHH
Confidence 45567788888888888999999888876664 333 33333333334
Q ss_pred hhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 006580 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269 (640)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 269 (640)
+...++.+++..+ .++.......++.-...+...|.+. .-+...+..+..+|.+.|+.+++..+|
T Consensus 75 ~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 75 SLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred HHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 5555554443333 2334444444554444444455442 234457778888888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhh
Q 006580 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFT 349 (640)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 349 (640)
+.+++.. +-|..+.|.+...|... ++++|.+++.+. +..|...+++..+.+++.++... .|+...
T Consensus 140 er~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d 204 (906)
T PRK14720 140 ERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFD 204 (906)
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--Ccccch
Confidence 9999887 55788889999999888 999999888764 34477778889999999988874 344332
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHH
Q 006580 350 LSCVLSSIPIPPVEHGSQFHSMAIKS-GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLT 423 (640)
Q Consensus 350 ~~~~l~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 423 (640)
+ -..+.+.+..+ +..--..++-.+-..|-..++++++..+|+.+.+ .|.....-++.+|.
T Consensus 205 ~--------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 205 F--------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred H--------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2 22333333332 3334455566677888888889999999988873 35556666666665
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=5.2e-05 Score=63.05 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=89.3
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 006580 434 VFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F 511 (640)
Q Consensus 434 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 511 (640)
.+++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++... .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 35544 44556667788889999999999888763 34467788888889999999999999988875 3
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 512 QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 512 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
.| +...+..+...+...|+++.|...++++++.+|.+...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 67788888889999999999999999999999977553
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00011 Score=61.61 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=45.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-FQPGC----SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
...+...|++++|...|+.+. ..|+. .....|...+...|++++|+..++.. ...+..+..+...+++|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 344455555555555555544 22322 12333455555666666666666442 2233444556666666667777
Q ss_pred hHHHHHHHHH
Q 006580 565 WEAIVRVKKV 574 (640)
Q Consensus 565 ~~~a~~~~~~ 574 (640)
+++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 7776666654
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.8e-06 Score=50.12 Aligned_cols=35 Identities=34% Similarity=0.672 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 006580 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG 147 (640)
Q Consensus 113 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 147 (640)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=5.3e-06 Score=49.50 Aligned_cols=34 Identities=38% Similarity=0.712 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006580 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRP 145 (640)
Q Consensus 112 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 145 (640)
+.+||.++.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.09 E-value=1.3e-05 Score=57.33 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG-RWEAIVRVKKVMRKN 578 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 578 (640)
++.+|..+...+...|++++|+..|+++++.+|.++..|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999 799999999988764
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=7e-06 Score=49.38 Aligned_cols=34 Identities=47% Similarity=0.948 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD 446 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 446 (640)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00016 Score=70.36 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 461 (640)
.....|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.... .+-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344567777788899999999999999777777777888898899999999999999975 2345556666667788999
Q ss_pred CHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 462 FVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
+++.|..+.+++.. ..|+ ..+|..|..+|...|+++.|+..++.++
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999885 3555 5599999999999999999999999998
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=5.2e-05 Score=58.42 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
+..+...+...|++++|...+++.. ..| +...+..+...+...++++.|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888888765 344 45677788888888899999999999999999988888999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 006580 564 RWEAIVRVKKVMRKNG 579 (640)
Q Consensus 564 ~~~~a~~~~~~m~~~~ 579 (640)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00046 Score=57.97 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--hhHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD---RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG--EEHYAC 488 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~ 488 (640)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344555555 4778888888888888752 222 123334456677888888888888888775 32222 123445
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMM 542 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 542 (640)
|...+...|++++|+..++... ....+..+......+...|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6777888888888888887765 22245567777888888888888888888753
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1.1e-05 Score=48.11 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP 445 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 445 (640)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888877776
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0015 Score=57.88 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=113.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH----
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC---- 494 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 494 (640)
...|+..|++++|++..+... ..+....+ +..+.+..+.+-|.+.++.|.+- .+..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 456888999999999887722 22333222 33455677889999999988752 34556666666554
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH-HH
Q 006580 495 QAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV-RV 571 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~ 571 (640)
-.+...+|.-+|+++. ..|++.+.+.....+...|++++|+.+++.++..++.++.+..+++-+-...|+-.++. +.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3457889999999997 77899999999999999999999999999999999999999999888878888776554 45
Q ss_pred HHHHHhC
Q 006580 572 KKVMRKN 578 (640)
Q Consensus 572 ~~~m~~~ 578 (640)
+..++..
T Consensus 265 l~QLk~~ 271 (299)
T KOG3081|consen 265 LSQLKLS 271 (299)
T ss_pred HHHHHhc
Confidence 5555543
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.0001 Score=59.63 Aligned_cols=94 Identities=16% Similarity=-0.002 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---hhHHHHHHH
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPS---PLPYSLLTQ 557 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 557 (640)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+...+...|+++.|...+++++...|.+ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555566666666655554 2222 2344556666666666777777777666665543 345666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 006580 558 AYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 558 ~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
++.+.|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666777777777776666654
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=7.6e-06 Score=61.23 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=50.6
Q ss_pred CChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 497 GQLGKAIDITSTMP-FQP---GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 497 g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
|++++|+.+++++. ..| +...+..+...+.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55556666665554 222 344555567777777777777777777 5566666666667788888888888888877
Q ss_pred HH
Q 006580 573 KV 574 (640)
Q Consensus 573 ~~ 574 (640)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.98 E-value=0.00019 Score=70.19 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=53.9
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 568 (640)
..+...|++++|++.|+++. ..| +...|..+..++...|++++|+..++++++++|.++..|..++.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 33445556666666665554 333 4555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCC
Q 006580 569 VRVKKVMRKNG 579 (640)
Q Consensus 569 ~~~~~~m~~~~ 579 (640)
+..+++..+.+
T Consensus 90 ~~~~~~al~l~ 100 (356)
T PLN03088 90 KAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHhC
Confidence 66666665543
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.97 E-value=2.8e-05 Score=54.78 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=52.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...+...|++++|...++++++.+|.++..+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677889999999999999999999999999999999999999999999999987754
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00017 Score=65.44 Aligned_cols=107 Identities=10% Similarity=-0.034 Sum_probs=92.7
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCChhHHH
Q 006580 479 VMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIY---GDVKLTENVAERMMDLQLPSPLPYS 553 (640)
Q Consensus 479 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~ 553 (640)
-+-|...|..|...|.+.|+...|..-|.+.. ..+++..+..+..++..+ .+..++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35678899999999999999999999999887 444788888888776543 3678999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 006580 554 LLTQAYAMRGRWEAIVRVKKVMRKNGINKVTG 585 (640)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 585 (640)
.|+..++..|++.+|...|+.|.+.....+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999987655544
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00011 Score=66.18 Aligned_cols=108 Identities=10% Similarity=-0.011 Sum_probs=81.8
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG-CSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a 534 (640)
+.+.+++.+|+..|.+..+ -.+-|...|..-..+|.+.|.++.|++-.+... +.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567788888888887774 233455566667778888888888888887776 6664 55888888999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChH
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 566 (640)
++.|+++++++|+|......|-++-.+.+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999988877777766655555544
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00034 Score=56.54 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=64.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG----CSIWESILR 523 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~ 523 (640)
+..+...+...|++++|.+.++.+.+...-.+ ....+..+..++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555556666666666666654311111 12344456666666666666666666654 2232 456677777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 554 (640)
.+...|+.+.|...++++++..|+++.....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 7788888888888888888888877655443
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=6.4e-05 Score=67.65 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=81.0
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 568 (640)
+-+.+.+++.+|+..|.++. +.| |+..|..=..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 44678899999999999987 666 8888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 006580 569 VRVKKVMRKNG 579 (640)
Q Consensus 569 ~~~~~~m~~~~ 579 (640)
++.|++..+..
T Consensus 169 ~~aykKaLeld 179 (304)
T KOG0553|consen 169 IEAYKKALELD 179 (304)
T ss_pred HHHHHhhhccC
Confidence 99998776643
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00038 Score=60.46 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
.+..+...+...|++++|...+++.. ..|+ ...+..+...+...|++++|...++++++..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45555666666677777777766654 2222 356778888888889999999999999998888888888888888
Q ss_pred HhcCC--------------hHHHHHHHHHHHhC
Q 006580 560 AMRGR--------------WEAIVRVKKVMRKN 578 (640)
Q Consensus 560 ~~~g~--------------~~~a~~~~~~m~~~ 578 (640)
...|+ +++|.+++++..+.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 88776 45555555555543
No 158
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.77 E-value=0.043 Score=52.84 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=36.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 006580 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ 488 (640)
+..+|++.++.-.-..+.+ +.|+..+|..+.-++....++++|..++. .++|+..+++.
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~------~LP~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ------KLPPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH------hCCCchhhHHH
Confidence 4456677666655555554 66766777666666666667777777665 44555555543
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.7e-05 Score=44.13 Aligned_cols=31 Identities=45% Similarity=0.803 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006580 113 VSWNSMISGYASCGYSDYALEMFSKMQLQGV 143 (640)
Q Consensus 113 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~ 143 (640)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.00076 Score=56.07 Aligned_cols=150 Identities=12% Similarity=0.017 Sum_probs=93.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 006580 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503 (640)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 503 (640)
+.=+++....-..+-.+ ..|+...-..|..++...|++.+|...|++...- -+..|....-.+.++....+++..|.
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 33345544433333333 4566666666777777778888888877777663 34456667777777777777777777
Q ss_pred HHHHhCC-CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 504 DITSTMP-FQP---GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 504 ~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
..++++. ..| ++.....+...+...|.+..|+..++.++...|. +..-...+..+.++|+.+++..-+..+.+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7777654 223 2334455667777777777777777777777663 22233344566777777777665554444
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00046 Score=59.77 Aligned_cols=93 Identities=10% Similarity=-0.086 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
...|..++..+...|++++|+..+++.. ..|+ ..+|..+...+...|++++|...++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4456667777788888888888888875 3332 3478889999999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 006580 558 AYA-------MRGRWEAIVRVKKVM 575 (640)
Q Consensus 558 ~~~-------~~g~~~~a~~~~~~m 575 (640)
++. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655544
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00082 Score=65.80 Aligned_cols=104 Identities=10% Similarity=0.002 Sum_probs=71.0
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 533 (640)
.+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344566777777777766652 23345556666667777777777777777765 444 56677777788888888888
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 534 TENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 534 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
|...++++++++|.++.....+..+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888887776666555433
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=97.70 E-value=0.00085 Score=55.45 Aligned_cols=88 Identities=7% Similarity=-0.010 Sum_probs=78.5
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 567 (640)
..-+...|++++|..+|.-+. ..| +...|..|...+...+++++|...|..+..++++||..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 344567899999999998876 444 777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 006580 568 IVRVKKVMRK 577 (640)
Q Consensus 568 a~~~~~~m~~ 577 (640)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998776
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=7.1e-05 Score=53.31 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|++++|++.++++++.+|.+...+..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999999999999999999998777654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0017 Score=56.35 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 006580 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD--RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC 488 (640)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ 488 (640)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+. .+-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566666777777888888888877776432222 245666666777777777777777776653 1223445555
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 489 IIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
+..++...|+...+..-++... ..+++|.+++++++..+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666666555443332211 12677888888988888877 5555555554443
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00018 Score=52.05 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=53.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
...|.+.++++.|.++++++++.+|.++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999987654
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0019 Score=60.92 Aligned_cols=134 Identities=14% Similarity=0.193 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA-CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998642 3334445444443 33457778899999999885 4567788889999
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
.+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+++.+..+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999987 3333 35899999999999999999999999999988743
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.9e-05 Score=43.40 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGL 443 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 443 (640)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777663
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00061 Score=52.20 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 533 (640)
.+...|++++|...++...+. .+.+...+..+...+...|++++|.+.++... ..| +..++..+...+...|+++.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 333444444444444444331 11122334444444444555555555554433 122 33455555555666666666
Q ss_pred HHHHHHHHHhcCC
Q 006580 534 TENVAERMMDLQL 546 (640)
Q Consensus 534 a~~~~~~~~~~~p 546 (640)
|...+.++++..|
T Consensus 87 a~~~~~~~~~~~~ 99 (100)
T cd00189 87 ALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHccCC
Confidence 6666666655544
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00014 Score=51.16 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=50.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
+...+.+.|++++|.+.|+++. ..| +...|..+...+...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999998876 456 677889999999999999999999999999999875
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0027 Score=65.04 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+..+..+.......|++++|...++++++++| +...|..++.++...|+.++|...+++....+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34454444444445666666666666666665 34556666666666666666666665555443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.52 E-value=0.00038 Score=51.96 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHH
Q 006580 425 NGRAAETLDVFEELLEEGL-PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKA 502 (640)
Q Consensus 425 ~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 502 (640)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|+.+++. . ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666666666665321 11223333355556666666666666655 1 11221 22333335555566666666
Q ss_pred HHHHHh
Q 006580 503 IDITST 508 (640)
Q Consensus 503 ~~~~~~ 508 (640)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655543
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.022 Score=47.75 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 006580 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489 (640)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 489 (640)
|++..--.|..++...|++.+|...|++...--+.-|......+.++....++...|...++.+.+...-.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445556666666666666666666553334444555555566666666666666666655431111123334445
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
...|...|++++|..-|+... .-|++..-......+.++|+.+++..-+..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556666666666666665554 444444433333444455554444443333
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.092 Score=53.32 Aligned_cols=31 Identities=16% Similarity=-0.066 Sum_probs=18.0
Q ss_pred CCchhhHHHHHHHHHccCCchHHHHHHhcCC
Q 006580 47 NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP 77 (640)
Q Consensus 47 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 77 (640)
.|++..|..+.......-.++.|...|=+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4666666666665555556666665555443
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.011 Score=56.01 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=114.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHhHHhhCCCCChhH------------
Q 006580 420 MGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA--CNYGGFVDKGMLVFSAMKEEYGVMPGEEH------------ 485 (640)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~p~~~~------------ 485 (640)
.++.-.|++++|...--..++. .++. .+..++++ +-..++.+.|...|++.. .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4566788999998887777663 2222 22333333 345678888888888765 33454322
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 006580 486 -YACIIDLLCQAGQLGKAIDITSTMP-FQP-----GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558 (640)
Q Consensus 486 -~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 558 (640)
+..=.+-..+.|++.+|.+.+.+.. +.| +...|.....+..+.|+..+|+.--+.+++++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1122344678899999999999987 444 456677777788889999999999999999999989999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCC
Q 006580 559 YAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+...++|++|.+-++...+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998876543
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00026 Score=50.34 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=32.4
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 495 QAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
..|++++|+++|+++. ..| +...+..++..|.+.|++++|.++++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3455555555555544 223 455555556666666666666666666666666554444433
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.44 E-value=0.00012 Score=43.07 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 006580 537 VAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 537 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
+++++++++|+|+..|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.13 Score=49.15 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006580 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467 (640)
Q Consensus 388 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~ 467 (640)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++... +-++.-|..++.+|.+.|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44444455555555555555555555555555555555555544433211 112244455555555555555555
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDIT 506 (640)
Q Consensus 468 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 506 (640)
.+...+. +..-+..|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5544321 123344455555555554443
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.00049 Score=49.09 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYG-DVKLTENVAERMMDLQL 546 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 546 (640)
+...|..+...+...|++++|+..|++.. ..| ++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35677788888888899999999888876 455 6778889999999999 79999999999999887
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.044 Score=51.95 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhh-CCCCC--hh
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLP-----PDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEY-GVMPG--EE 484 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~p~--~~ 484 (640)
++..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...|++..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3455667788888888888888887764322 1221 22233334556688888888888776431 22222 33
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCC
Q 006580 485 HYACIIDLLCQ--AGQLGKAIDITSTMP 510 (640)
Q Consensus 485 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 510 (640)
....|+.++-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666643 235666666666665
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.0093 Score=61.19 Aligned_cols=141 Identities=12% Similarity=0.040 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHHhC--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 006580 409 KRDLVSWNTIMMGLTQN--G---RAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYG--------GFVDKGMLVFSAMK 474 (640)
Q Consensus 409 ~~~~~~~~~li~~~~~~--g---~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------~~~~~A~~~~~~~~ 474 (640)
..+...|...+.+.... + ....|..+|++..+ ..|+.. .+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 46888999998875442 2 37789999999999 477764 555554444321 12234444444333
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 475 EEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 475 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
.......+...|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|.+.+++++.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 221234455678877777777899999999999988 78898899999999999999999999999999999988753
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.38 E-value=0.0023 Score=62.71 Aligned_cols=119 Identities=12% Similarity=0.095 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccCC-C-----CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchH
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-L-----DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~ 249 (640)
.+-+......+++......+++.+..++-.... | -..+..++++.|.+.|..+.++.+++.=..-|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 455666667777777777778888887776652 2 2345679999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 006580 250 SIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKC 294 (640)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (640)
+.+|..+.+.|++..|.++...|..++...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998888777777776666665554
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0025 Score=60.10 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ-AGQLGKAIDITSTMP--FQPGCSIWESILRA 524 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 524 (640)
.+|..+++..-+.+..+.|..+|.+.++. -..+...|......-.+ .++.+.|.++|+... +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888899999999999753 23345566666666444 566777999999987 66788999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSP---LPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+...++.+.|..+|++++..-|.+. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999866443 68999999889999999999999998764
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0049 Score=53.31 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD--RITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555556666666666666554321111 12444555555555666666665555543
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0036 Score=47.69 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhhCCCCChhHH
Q 006580 416 NTIMMGLTQNGRAAETLDVFEELLEEGL-PPDRITLAAVLLACNYGG--------FVDKGMLVFSAMKEEYGVMPGEEHY 486 (640)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~A~~~~~~~~~~~~~~p~~~~~ 486 (640)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666777999999999999999999 899999999998876542 344677889999887 899999999
Q ss_pred HHHHHHHHh
Q 006580 487 ACIIDLLCQ 495 (640)
Q Consensus 487 ~~l~~~~~~ 495 (640)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.35 E-value=0.003 Score=61.97 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
..+++..|...|..+.++.+++.=..-|+-||..+++.|++.+.+.|++..|.++...|... +...+..++..-+.+|
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Confidence 34555555555555555555555555555566666666666666666665555555555544 3334444443333333
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.0095 Score=47.32 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=66.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHH
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDR--ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLC 494 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 494 (640)
+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445677789999999999999998876653 3666777888899999999999998876521111 2223333445677
Q ss_pred hcCChHHHHHHHHhCC
Q 006580 495 QAGQLGKAIDITSTMP 510 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~ 510 (640)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888888775543
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0039 Score=49.51 Aligned_cols=87 Identities=10% Similarity=-0.090 Sum_probs=53.0
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CC--CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHh
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-FQ--PG--CSIWESILRASAIYGDVKLTENVAERMMDLQLP---SPLPYSLLTQAYAM 561 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 561 (640)
..++-..|+.++|+.++++.. .. .. ...+-.+.+.+...|++++|..++++.+...|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344555666666666666554 11 11 234555666777777777777777777776665 44555555667777
Q ss_pred cCChHHHHHHHHHHH
Q 006580 562 RGRWEAIVRVKKVMR 576 (640)
Q Consensus 562 ~g~~~~a~~~~~~m~ 576 (640)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777777664433
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.24 E-value=0.0056 Score=46.70 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHh-----------chhHHHHHHHHHHHhCCCCCchhHH
Q 006580 116 NSMISGYASCGYSDYALEMFSKMQLQGV-RPSGFTFSILLSTVS-----------SACHGKQIHGSMIRSGLSLSNVVLG 183 (640)
Q Consensus 116 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (640)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+ .+-....+++.++..+ ..|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 3455666667888888888888888888 788888888888887 2234456667777766 77777777
Q ss_pred HHHHHhhhc
Q 006580 184 NSLIDMYGK 192 (640)
Q Consensus 184 ~~li~~~~~ 192 (640)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766543
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.2 Score=47.45 Aligned_cols=244 Identities=15% Similarity=0.097 Sum_probs=158.3
Q ss_pred HhCCChHHHHHHHHHHhhCCCCCChhh--HHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHH
Q 006580 323 GRYGFGEVALELFQLMLREDIRPTEFT--LSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDS 399 (640)
Q Consensus 323 ~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 399 (640)
.-.|+++.|.+-|+.|... |.... +..+.-...+ |+.+.|..+-+..-..- +.-.....+.++..|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3457777777777777652 22221 1112222223 77777777766655442 2334556788899999999999
Q ss_pred HHHHHHhCC-----CCChhH--HHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHH
Q 006580 400 STEIFVKLD-----KRDLVS--WNTIMMGLT---QNGRAAETLDVFEELLEEGLPPDRIT-LAAVLLACNYGGFVDKGML 468 (640)
Q Consensus 400 A~~~~~~~~-----~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~A~~ 468 (640)
|+++.+.-. ++++.- --.|+.+-. -..+...|...-.+..+ +.||... -..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 999997655 344331 222222211 12356667766666655 6777753 3344578899999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH----HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI----DITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 469 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
+++.+-+. .|.+..+...+ +.+.|+..... +-++.|. +.+......+..+....|++..|..-.+.+...
T Consensus 285 ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99988754 66666654433 35666533211 1223332 336677788888889999999999999988888
Q ss_pred CCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHhCC
Q 006580 545 QLPSPLPYSLLTQAYAMR-GRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 545 ~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 579 (640)
.|. ...|..|+++-... |+-.++..++.+..+.-
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 885 47788888887655 99999999998777654
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.22 E-value=0.0034 Score=58.04 Aligned_cols=86 Identities=9% Similarity=-0.123 Sum_probs=48.5
Q ss_pred HhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCCh
Q 006580 494 CQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPS---PLPYSLLTQAYAMRGRW 565 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 565 (640)
.+.|++++|...|+... ..|+ +..+--+...|...|+++.|...|+++++..|++ +..+..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34455555555555443 2222 2344455566666666666666666666665543 34444556666666677
Q ss_pred HHHHHHHHHHHhCC
Q 006580 566 EAIVRVKKVMRKNG 579 (640)
Q Consensus 566 ~~a~~~~~~m~~~~ 579 (640)
++|.++++.+.+..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 77777666666543
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.082 Score=48.60 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=96.9
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--CChh-H---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 006580 388 MEMYAKTGSIDSSTEIFVKLDK--RDLV-S---WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY-- 459 (640)
Q Consensus 388 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 459 (640)
...+.+.|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3344556777777777777662 2221 1 123456667777788888888777774211112233333333321
Q ss_pred c---------------CC---HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 006580 460 G---------------GF---VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESI 521 (640)
Q Consensus 460 ~---------------~~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 521 (640)
. .+ ...|+..|+.+.++ -|+. .-..+|...+..+....- ..--..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~la-~~e~~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDRLA-KYELSV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 0 11 12344445554443 1222 112233322222210000 001134
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 522 LRASAIYGDVKLTENVAERMMDLQLPS---PLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
...|.+.|.+.-|..-++.+++..|.. ..+...++.+|.+.|..++|..+.+.+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 566888999999999999999997754 4566788899999999999999887664
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.15 E-value=0.0011 Score=42.07 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
.+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999888764
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.0011 Score=48.67 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDL----QLP---SPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.+++.+...|...|++++|+..++++++. ++. -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46788888888899999999999888866 222 256788999999999999999999987754
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.12 E-value=0.29 Score=47.41 Aligned_cols=190 Identities=13% Similarity=0.086 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCChhHH-------HHHHHHHH----hCCChHHHHHHHHHHHHCCCCCCHH
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSW-------NTIMMGLT----QNGRAAETLDVFEELLEEGLPPDRI 448 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-------~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~ 448 (640)
..+..++....+.++...|.+.+.-+. .|+...- ..+-+..+ ..-+...=+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 355666777778888888877776655 3332211 11111222 1112333455666666643 3332
Q ss_pred -HHHHHH---HHHhccCC-HHHHHHHHHHhHHhhCCCCChhHHHHHH----HHHHhc---CChH---HHHHHHHhCCCCC
Q 006580 449 -TLAAVL---LACNYGGF-VDKGMLVFSAMKEEYGVMPGEEHYACII----DLLCQA---GQLG---KAIDITSTMPFQP 513 (640)
Q Consensus 449 -~~~~ll---~~~~~~~~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~~ 513 (640)
....|+ .-+-+.|. -++|+.+++.+.+- .+-|...-+.+. ..|..+ ..+. +-..++++..+.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 112222 23445555 77888888887652 222333322221 122211 1122 2333444444333
Q ss_pred ----CHHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 514 ----GCSIWESILRA--SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 514 ----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+...-|.|..| +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455566544 4678999999999888888888 89999999999999999999999997553
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.11 E-value=0.026 Score=53.54 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-------CC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCCH--HH
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLD-------KR--DLVSWNTIMMGLTQNGRAAETLDVFEELLE----EGLPPDR--IT 449 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~--~~ 449 (640)
......|-..+++++|.+.|.+.. .+ -...|......|.+. ++++|++.+++..+ .| .|+. .+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 334455666777777766665543 11 122445555555444 88888888877665 33 3333 36
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHH
Q 006580 450 LAAVLLACNYG-GFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP----FQP----GCS 516 (640)
Q Consensus 450 ~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~ 516 (640)
+..+...|... |++++|++.|++..+-+..... ..++..+...+.+.|++++|.++|++.. ..+ +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 66777788888 8999999999987764322222 3356677888999999999999998764 111 121
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 517 -IWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 517 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
.+-..+-.+...||...|...+++....+|
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 223334455667899999999999998887
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.10 E-value=0.12 Score=47.54 Aligned_cols=53 Identities=13% Similarity=-0.003 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--Ch-hh---HHHHHHHHHhCCChHHHHHHHHHHhhC
Q 006580 289 DLFSKCNRLEDSVRLFEQLDRW--DY-AV---INVMISTYGRYGFGEVALELFQLMLRE 341 (640)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~~~~--~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 341 (640)
..+.+.|++++|.+.|+.+... +. .. .-.+..++.+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344556666666666665442 11 11 123445666677777777777776664
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.0029 Score=61.43 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL---PYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+...|+.+..+|...|++++|+..++++++++|++.. +|.+++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667888888888888888888888888888887764 4888888888888888888888887775
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.07 E-value=0.3 Score=46.70 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHH
Q 006580 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALEL 334 (640)
Q Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (640)
.+..+.-+...|+...|.++..+..-|+-.-|...+.+++..++|++-.++
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344455555666666666666666666666666666666666666655443
No 200
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.06 E-value=0.56 Score=49.59 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=50.6
Q ss_pred hcCCChhHHHHHhccCCCC-CcchHHHHHHHH--HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhHHHH
Q 006580 92 LKSDNLDTALKVFDEIPEP-DVVSWNSMISGY--ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---SACHGKQ 165 (640)
Q Consensus 92 ~~~~~~~~A~~~~~~~~~~-~~~~y~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~a~~ 165 (640)
...+++..|......+.+. ....|..++.++ .|.|+.++|..+++.....+.. |..|...+-.++. ..+.+..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4556777777777766542 223344555544 5777888888777766554333 4444433333333 3344444
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHhhhcCCC
Q 006580 166 IHGSMIRSGLSLSNVVLGNSLIDMYGKLGV 195 (640)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 195 (640)
+++..... +|. ......+-.+|+|.+.
T Consensus 99 ~Ye~~~~~--~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 99 LYERANQK--YPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHhh--CCc-HHHHHHHHHHHHHHHH
Confidence 44444443 222 3334444444444443
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.027 Score=46.56 Aligned_cols=91 Identities=8% Similarity=-0.039 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 461 (640)
-.+...+...|++++|..+|+-+. .| +..-|-.|..++-..|++++|+..|....... +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 344555566777777777777665 23 45566677777777777777777777777743 334456667777777777
Q ss_pred CHHHHHHHHHHhHHh
Q 006580 462 FVDKGMLVFSAMKEE 476 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~ 476 (640)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777766654
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.0095 Score=51.62 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=74.9
Q ss_pred HHHHHhC--CCCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 006580 401 TEIFVKL--DKRDLVSWNTIMMGLTQ-----NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG------------ 461 (640)
Q Consensus 401 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 461 (640)
...|+.. ...+-.+|..++..|.+ +|..+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 35677777777777764 4677888888999999999999999999999876532
Q ss_pred ----CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 006580 462 ----FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498 (640)
Q Consensus 462 ----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 498 (640)
+.+-|++++++|... |+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 345688889998876 999999999888888876654
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.97 E-value=0.12 Score=40.73 Aligned_cols=141 Identities=9% Similarity=0.090 Sum_probs=90.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 006580 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 501 (640)
..-.|..++..++..+.... .+..-++.++-.....-+-+-..++++.+-+-+.+.|-. ....++..|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 44568888889998888763 345566666665556666677777777765544333321 22333444444433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006580 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 581 (640)
+....+..+.+...+|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455667788889999999999999998877788999999999999999999999999999999974
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.21 Score=50.39 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CChh-----------HHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDK--RDLV-----------SWNTIMMGLTQNGRAAETLDVFEELLEE 441 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (640)
.+++++....+++.+|..+-++.++ +++. -|...-++|.+.|+..+|..+++++...
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3567777778888888888777774 3322 1222234566667777777777766553
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0086 Score=56.85 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.++..|...+.+.+++..|+....+.++.+|+|..+...-+.+|...|+++.|+..|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3456666667777777777777777777777777777777777777777777777777777643
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.004 Score=44.90 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=52.5
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 554 (640)
..|.+.+++++|.+.++.+. ..| ++..|......+...|++++|.+.++++++..|.++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 56778888888888888877 445 67788888889999999999999999999999977665443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.018 Score=53.32 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP----GCSIWESIL 522 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~ 522 (640)
.|...+....+.|++++|+..|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+. ..| .+..+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434455677777777777766421111 02345566677777777777777777664 222 244555566
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 523 RASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
..+...|+.+.|...|+++++..|.+...
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 67778889999999999999988876543
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.5 Score=47.85 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH-----------
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCS----------- 516 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----------- 516 (640)
+...+...+.+...+..|-++|.+|-+ ...+++.....+++++|..+-++.+ +.||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 344444444455556666677766643 2345666677777777777777766 444432
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
-+...-.+|.+.|+..+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223345677888889999998887655
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.29 Score=43.74 Aligned_cols=132 Identities=8% Similarity=-0.045 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH----
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI---- 489 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l---- 489 (640)
.-+.++..+.-.|.+.-.+..+++.++..-+.+......|.+.-.+.|+.+.|..+|+...+. .-..+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345566666667777777888888887654556666677777777888888888888866544 222222222222
Q ss_pred -HHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 490 -IDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 490 -~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
...|.-++++.+|...+.+++ ...++...|.-.-...-.|+...|.+..+.+++..|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 223334445555555555554 122333333333333334555555555555555555
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.028 Score=53.49 Aligned_cols=138 Identities=9% Similarity=-0.037 Sum_probs=99.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 498 (640)
...|.+.|++..|..-|++..+. +. +...-+.++...... .-..++..|..++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 35677777888887777776651 00 011111122111111 112356677888899999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH-HHHHHHH
Q 006580 499 LGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI-VRVKKVM 575 (640)
Q Consensus 499 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 575 (640)
+.+|++..+... .++|+..+--=..+|...|+++.|...|+++++++|.|-.+-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888876 4557888888889999999999999999999999999999988888888777766555 7788888
Q ss_pred HhC
Q 006580 576 RKN 578 (640)
Q Consensus 576 ~~~ 578 (640)
-+.
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.089 Score=46.85 Aligned_cols=132 Identities=4% Similarity=-0.078 Sum_probs=104.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCC-----HHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP---FQPG-----CSIWESI 521 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-----~~~~~~l 521 (640)
...++..+...|.+.-....+.++.+. .-+.++.....|+..-.+.|+.+.|...|++.. .+.| .......
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666778888888899998885 556678888899999999999999999999654 1222 2333344
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 006580 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 582 (640)
...+.-++++..|...+.+++..+|.++.+.++-+-+..-.|+..+|.+.++.|....+.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4556667899999999999999999999999988888888999999999999999876433
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.69 E-value=0.67 Score=44.96 Aligned_cols=145 Identities=10% Similarity=0.061 Sum_probs=100.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCC-CCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 006580 310 WDYAVINVMISTYGRYGFGEVALELFQLMLRED-IRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLM 388 (640)
Q Consensus 310 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 388 (640)
.-..+|...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++.|+...|..+|+.-...- +.++...+-.+
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl 473 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKF-PDSTLYKEKYL 473 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567778887778778888888888888888 6677788888888877788888888876655432 33333345566
Q ss_pred HHHHhcCChHHHHHHHHhCCC---CC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006580 389 EMYAKTGSIDSSTEIFVKLDK---RD--LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 457 (640)
..+...++-+.|..+|+.... .+ ...|..+|.--..-|+...+..+=++|.. +-|...+......-|
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 677778888888888875442 12 34677777777777888777777777776 456555544444433
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.67 E-value=0.24 Score=47.87 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=96.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC-------ChhHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDKR-------DLVSWNTIMMGLTQ---NGRAAETLDVFEELLEEGLPPDRITLAAVLL 455 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 455 (640)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777642 12222233445556 7888889988888666556777777777766
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC-hH---HHHHHH---HhCC-----CCC-
Q 006580 456 ACNY---------GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ-LG---KAIDIT---STMP-----FQP- 513 (640)
Q Consensus 456 ~~~~---------~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-----~~~- 513 (640)
.|-. ....++|+..|.+.- .+.|+..+=-.++-.+...|. .+ +..++- .... ..+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 224667777777554 445654432233333333443 11 222222 1111 223
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 514 -GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 514 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
+.-.+.+++.++.-.|++++|.+.++++.+..|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33345678888888999999999999999987765
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.08 Score=48.59 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CCC-CHHHH
Q 006580 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG---QLGKAIDITSTMP-FQP-GCSIW 518 (640)
Q Consensus 444 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~~~~~ 518 (640)
+-|...|..|..+|...|+.+.|...|....+. ..+++..+..+..++..+. ...++.++|+++. ..| |+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 445678888888999999999999988888763 3455666777766654332 3568888898887 455 77788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 519 ESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 519 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
..|...+...|++.+|...++.|++..|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 8888899999999999999999999988664
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.013 Score=49.17 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.++..++..+...|+++.|..++++++..+|.+...|..++.+|...|+..+|.++++++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566777888999999999999999999999999999999999999999999999988853
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=1.1 Score=45.98 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 006580 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337 (640)
Q Consensus 278 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (640)
+.+....-.+.+++...|.-++|.+.+-+...|. +.+..|...++|.+|.++-+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666666666666666554443332 233445555556666555443
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=1.4 Score=45.76 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006580 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRA 524 (640)
Q Consensus 445 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 524 (640)
-...+.+--+.-+...|+..+|.++-++.+ -||...|..=+.++...+++++-+++-++.. .+.-|.-+..+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 333445555556667777777777655442 4677777777788888888888777776654 24456667778
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
|.++|+.++|..++-+.- + +.....+|.+.|++.+|.+..-
T Consensus 754 c~~~~n~~EA~KYiprv~----~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG----G----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhcccHHHHhhhhhccC----C----hHHHHHHHHHhccHHHHHHHHH
Confidence 888888888877765531 1 1256677788888887776543
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.45 E-value=0.027 Score=48.93 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006580 126 GYSDYALEMFSKMQLQGVRPSGFTFSILLST 156 (640)
Q Consensus 126 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 156 (640)
|..+-....++.|.+-|+.-|..+|+.||..
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDv 96 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDV 96 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHh
Confidence 4444444444455555555555555444443
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.45 E-value=0.88 Score=43.35 Aligned_cols=267 Identities=13% Similarity=0.015 Sum_probs=146.5
Q ss_pred CCChhHHHHHhccCC---CCCcchHHHHHHH--HHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-------chh
Q 006580 94 SDNLDTALKVFDEIP---EPDVVSWNSMISG--YASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS-------SAC 161 (640)
Q Consensus 94 ~~~~~~A~~~~~~~~---~~~~~~y~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~ 161 (640)
.|+-..|.+.-.+-. ..|....-.|+.+ -.-.|+++.|.+-|+-|... ..|-..=++++. ..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHH
Confidence 455555555544332 2344443333332 23457777777777777652 222222222222 444
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccC-----CCCeee--HHHHHHHH---HhcCChhHHH
Q 006580 162 HGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-----ELDIIS--WNSLISGC---FNSGYGELAL 231 (640)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~li~~~---~~~~~~~~A~ 231 (640)
.+.++-+..... -|.-...+.+++...|..|+++.|+++++.-. ++|+.- -..|+.+- .-.-+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 555555555544 45566777888888888888888888887654 233221 11222211 1123345555
Q ss_pred HHHHHhHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH----HHHHHh
Q 006580 232 DQFYSMRYSGYSPDEY-TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS----VRLFEQ 306 (640)
Q Consensus 232 ~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~ 306 (640)
+.-.+..+ +.||.. .-.....++.+.|++.++-.+++.+-+....|+. .++..+.+.|+.... .+-+..
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 55444433 556655 3334456778888888888888888777555543 223344555653222 133455
Q ss_pred cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhC-CC-CChHHHHHHHHHHHHh
Q 006580 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI-PI-PPVEHGSQFHSMAIKS 375 (640)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~-~~-~~~~~a~~~~~~~~~~ 375 (640)
|...+..+.-.+..+-...|++..|..--+...+ ..|....|..+-..- +. ||-.++...+.+.++.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6666667766777777777777666655444443 355555554444332 22 6666666666655554
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.41 E-value=0.046 Score=51.83 Aligned_cols=129 Identities=10% Similarity=0.034 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh---HHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAM---KEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP--------FQPGC 515 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~ 515 (640)
..|..|-+.|.-.|++++|+...+.- .+.+|-+.. ...+..|.+++.-.|+++.|.+.++... -.-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666666678889888776542 222333222 3356777888888888988888887653 11134
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDL------QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
...-+|...|.-..++++|+.+..+=+.+ .......+..|+.+|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667778887778888888887765544 23556778899999999999999988776554
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.37 E-value=0.17 Score=45.20 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=83.9
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc-
Q 006580 389 EMYAKTGSIDSSTEIFVKLDK--R----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR--ITLAAVLLACNY- 459 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~- 459 (640)
..+...|++.+|...|+.+.. | -....-.++.++.+.|+++.|...++++++. -|+. ..+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344556667777776666652 2 1223445566677777777777777776663 2222 122222222211
Q ss_pred ------------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006580 460 ------------GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI 527 (640)
Q Consensus 460 ------------~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 527 (640)
.+...+|...|+.+.++ |=.+....+|...+..+...- ...--.+...|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11122344444444433 222222233333222221000 0011124567888
Q ss_pred cCChHHHHHHHHHHHhcCCCChh---HHHHHHHHHHhcCChHHHHH
Q 006580 528 YGDVKLTENVAERMMDLQLPSPL---PYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 570 (640)
.|.+..|..-++.+++..|+.+. ....++.+|.+.|..+.+..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999887654 45677889999998885543
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.30 E-value=0.065 Score=43.08 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 006580 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492 (640)
Q Consensus 442 g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 492 (640)
...|+..+..+++.+|+..|++..|+++++...+.++++-+...|..|++=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356888888888888888888888888888888888887777788777763
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=1.7 Score=45.13 Aligned_cols=58 Identities=9% Similarity=-0.026 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 006580 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQL 337 (640)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (640)
...+.+-.+..+..-|+..+|.++-.+..-+|-..|-.-+.+++..++|++-+++-+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 3344455555666667777777777777767777776667777777777665554433
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.27 E-value=0.17 Score=48.16 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---hC-CCCChhH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEEL----LEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEE---YG-VMPGEEH 485 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~-~~p~~~~ 485 (640)
|..|...|.-.|+++.|+..-+.= ++-|-+. ....+..+.+++.-.|+++.|.+.|+..... .| -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 444444455556666665543321 1222222 2235666666666667777777766653321 01 1122334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP--------FQPGCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
..+|.+.|.-...+++|+.++.+-. ..-....+-+|..++...|..++|+.+.++.++.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4456666666677777777765543 1223456667777888888888888777776655
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.27 E-value=0.036 Score=43.42 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=71.4
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCh---hHHHHHHHHHHhcCC
Q 006580 491 DLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDL-QLPSP---LPYSLLTQAYAMRGR 564 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g~ 564 (640)
-++...|+++.|++.|.... .+..++.||.-.+++.-+|+.++|+.-+++++++ ++... ..|..-+..|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35677888888888888776 3447888999999999999999999999999988 45433 245566778888899
Q ss_pred hHHHHHHHHHHHhCCC
Q 006580 565 WEAIVRVKKVMRKNGI 580 (640)
Q Consensus 565 ~~~a~~~~~~m~~~~~ 580 (640)
-+.|..-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888877763
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.0075 Score=44.13 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
.++..+...+...|++++|++.+++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666667777777777777777776553
No 227
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=1.4 Score=42.38 Aligned_cols=160 Identities=9% Similarity=-0.008 Sum_probs=91.0
Q ss_pred CChhhHHHHHhhCCC--CChHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHhcCChHHHHHHHHhCCCCChhH------
Q 006580 345 PTEFTLSCVLSSIPI--PPVEHGSQFHSMAIKSGFDSNAVVASSLME--MYAKTGSIDSSTEIFVKLDKRDLVS------ 414 (640)
Q Consensus 345 p~~~t~~~~l~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~------ 414 (640)
|.-.++..+-..|.. ++.+.|..+-..+.+..- .+ .+..+++ ++--.++.+.|...|.+...-++..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 333444444444444 777777766655555431 11 1112222 2233566777777777766432221
Q ss_pred ---------HHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 006580 415 ---------WNTIMMGLTQNGRAAETLDVFEELLE---EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482 (640)
Q Consensus 415 ---------~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 482 (640)
|..-..-..+.|++..|.+.|.+.+. .+++|+...|........+.|+..+|+.-.+.... +.|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHH
Confidence 22222335677888888888888876 23445555666666777788888888887776553 2221
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 483 -EEHYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 483 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
...|..-..++...++|++|.+-++++.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222345556678888888887765
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.98 E-value=0.35 Score=43.22 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=81.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 006580 417 TIMMGLTQNGRAAETLDVFEELLEEGLP-P-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494 (640)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 494 (640)
.....+...|++.+|.+.|+++...... | -......++.++.+.|+++.|...++.+.+.+.-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 3445667788888888888888874211 1 123555667788888888888888888887654444322 222222221
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH-----------------HHHHHH
Q 006580 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP-----------------YSLLTQ 557 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~ 557 (640)
..+...... ......+....|...++.++...|+++.. -..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 01122234456666666666666655432 225688
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 006580 558 AYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 558 ~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.|.+.|.+..|..-++.+.+.-
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999999998864
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.95 E-value=0.055 Score=52.88 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGC----SIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
...+..+..+|...|++++|+..|++.. ..|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666667777777777777776654 55542 24677777777777777777777777776
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.90 E-value=0.82 Score=44.33 Aligned_cols=165 Identities=12% Similarity=0.077 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEG---LPPDRITLAAVLLACNY---GGFVDKGMLVFSAMKEEYGVMPGEEHYA 487 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 487 (640)
+...++-+|....+++..+++.+.|.... +.-....-....-++.+ .|+.++|++++..+... ...+++++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33456667999999999999999998741 11111122233445666 89999999999996665 6778888988
Q ss_pred HHHHHHHh----c-----CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCC-h---HHHHHHH----HHHHhc----C
Q 006580 488 CIIDLLCQ----A-----GQLGKAIDITSTMP-FQPGCSIWESILRASAIYGD-V---KLTENVA----ERMMDL----Q 545 (640)
Q Consensus 488 ~l~~~~~~----~-----g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~---~~a~~~~----~~~~~~----~ 545 (640)
.+...|.. . ...++|++.|.+.- ..||...--.++..+...|. . .+..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88776532 2 24678888887764 55654432222223333332 1 1222222 111122 1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 546 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
-.+-..+.+++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2555667788999999999999999999998763
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.88 E-value=0.65 Score=47.52 Aligned_cols=161 Identities=12% Similarity=0.019 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHhc----cCCHHHHHHHHHHhHHhhCCCCCh
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRI-----TLAAVLLACNY----GGFVDKGMLVFSAMKEEYGVMPGE 483 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~-----~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~ 483 (640)
....+++...-.|+-+.+++.+.+..+.+ +.-... .|..++..++. ..+.+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34455555666777777777777665522 221111 23333333332 45677888888888765 4665
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH-H
Q 006580 484 EHYACI-IDLLCQAGQLGKAIDITSTMP-F-----QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL-L 555 (640)
Q Consensus 484 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l 555 (640)
..|... ...+...|++++|++.|+++. . +.....+--+...+....++++|.+.+.++.+.+.-+...|.- .
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 554433 355667788888888888754 1 1123345556667778889999999999999887765555554 4
Q ss_pred HHHHHhcCCh-------HHHHHHHHHHHh
Q 006580 556 TQAYAMRGRW-------EAIVRVKKVMRK 577 (640)
Q Consensus 556 ~~~~~~~g~~-------~~a~~~~~~m~~ 577 (640)
+-++...|+. ++|.+++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4555677888 888888877754
No 232
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.88 E-value=2.4 Score=43.08 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=119.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRD---LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
+...+...+..-.+.|+.+.+.-+|++..-|- ...|-..+.-....|+.+-|..++....+--++-.+.+...-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34556666777778888888888888877442 234444444444558888888877776664333333332222233
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHhcCChHHHH---HHHHhCC-CCCCHHHHHHHHHH-----HH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEE-HYACIIDLLCQAGQLGKAI---DITSTMP-FQPGCSIWESILRA-----SA 526 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~~~-----~~ 526 (640)
+-..|+++.|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++.... .+-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999885 3 5532 3333355667788888877 5554443 33344444333322 33
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
..++.+.|..++.++.+..|++...|..++.....++
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4579999999999999999999999999998887766
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.12 Score=43.46 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCChhHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE----EYGVMPGEEHY 486 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~p~~~~~ 486 (640)
....++..+...|++++|+.+++.+.... +-|...|..++.++...|+...|.++|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666777888888888888887742 44566778888888888888888887776643 34777776553
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.76 E-value=0.3 Score=39.73 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh---HHHHHHHHHHhc
Q 006580 491 DLLCQAGQLGKAIDITSTMP----FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL---PYSLLTQAYAMR 562 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 562 (640)
....+.|++++|.+.|+.+. ..| ....--.|+.+|.+.++++.|...+++.++++|.++. ++...+-++.++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33456777777777777765 222 3456677888999999999999999999999885543 333344444444
Q ss_pred CC---------------hHHHHHHHHHHHhCC
Q 006580 563 GR---------------WEAIVRVKKVMRKNG 579 (640)
Q Consensus 563 g~---------------~~~a~~~~~~m~~~~ 579 (640)
.. ..+|..-|+.+.+.-
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 44 556666666666543
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.73 E-value=2.2 Score=41.59 Aligned_cols=134 Identities=11% Similarity=0.078 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 006580 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490 (640)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 490 (640)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.=... ++.+..--...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666777667777888888888888877 5667777777777655 47788888888765543 233333344556
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 491 DLLCQAGQLGKAIDITSTMP--FQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
.-+.+.++-+.|..+|+... +..+ -.+|..++..-...|++..+..+-+++.+..|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888888888888654 2223 4578888888888888888888888888887754
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.61 E-value=0.18 Score=49.55 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
|+.....+..+..-.++++.|...++++..++|+.+.+|...++.+.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444555555555555555555555555555555555555555544443
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.58 E-value=3.1 Score=45.91 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCChhHH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVSW---NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFV 463 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 463 (640)
-+.+|..+|+|++|..+...+..+-.... ..|+.-+...+++-+|-+++.+... .|. ..+..+++...|
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHH
Confidence 45667777778887777777764322222 5566777777888787777776654 222 122234444555
Q ss_pred HHHHHHHH
Q 006580 464 DKGMLVFS 471 (640)
Q Consensus 464 ~~A~~~~~ 471 (640)
++|..+-.
T Consensus 1043 ~eAlrva~ 1050 (1265)
T KOG1920|consen 1043 EEALRVAS 1050 (1265)
T ss_pred HHHHHHHH
Confidence 55555443
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=0.11 Score=47.01 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=28.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 521 ILRASAIYGDVKLTENVAERMMDLQL---PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
|..++...|+++.|...|..+.+..| ..+..+.-|+.+..+.|+.++|..+|+.+.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33444444555555555555554433 22344445555555555555555555555444
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.37 E-value=2.9 Score=41.58 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=69.9
Q ss_pred hCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 006580 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403 (640)
Q Consensus 324 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 403 (640)
+..+...-++.-++..+ +.||-.+.-.++..-....+.++..++++..+.|-. .+-.....+..-......
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILLAEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhhcccchhhhh
Confidence 34444444444444443 456665554444433335677777777777765410 000000000000000000
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 006580 404 FVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP--DRITLAAVLLACNYGGFVDKGMLVFSAM 473 (640)
Q Consensus 404 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 473 (640)
..+-..+-+..-..+..+..+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 111111122233445666667788888888888777642 22 2235566777777777777777777765
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=2.2 Score=39.35 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=16.8
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 544 LQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 544 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
.+|+|...-..++..+...|+.++|.+.+=.+
T Consensus 231 adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 231 ADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35555555555555555555555555544333
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.21 E-value=1.5 Score=36.33 Aligned_cols=126 Identities=8% Similarity=0.002 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 494 (640)
...++..+...+.+.....+++.+...+ ..+...++.++..|++. +..+.+..++. ..+.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445566666666777777777776655 34555666666666654 23333344331 122233344556666
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 495 QAGQLGKAIDITSTMPFQPGCSIWESILRASAIY-GDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
+.+.++++.-++.++. -+...+..+... ++++.|.+.+++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~------~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDG------NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhc------CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666654 122222333333 666666666655 234556666555443
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=1.6 Score=40.29 Aligned_cols=172 Identities=11% Similarity=0.063 Sum_probs=116.9
Q ss_pred hHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 397 IDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 397 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
-+...+.++++..+....--.-.......|+..+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-..
T Consensus 119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3355566666665422222233445678899999999999998852 333456667889999999999999999976442
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CChhHHH
Q 006580 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQL--PSPLPYS 553 (640)
Q Consensus 477 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~ 553 (640)
.-.........-+..+.+.....+...+-.+.-..| |...--.+...+...|+.+.|.+.+-.++..+. .+...-.
T Consensus 198 -~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 198 -AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred -chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 111111122234555666666555555555554456 777778888899999999999998888887744 6677788
Q ss_pred HHHHHHHhcCChHHHHH
Q 006580 554 LLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 554 ~l~~~~~~~g~~~~a~~ 570 (640)
.|+..+..-|.-+.+..
T Consensus 277 ~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 277 TLLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHHhcCCCCHHHH
Confidence 88888888875544433
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.27 Score=45.59 Aligned_cols=159 Identities=13% Similarity=0.043 Sum_probs=115.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHHhcCC
Q 006580 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI----IDLLCQAGQ 498 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~ 498 (640)
-.+|+..+|...++++.+. .+.|...+.-.=.+|...|+.+.-...++++... -.|+...|..+ .-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888899999999885 5667777777778899999999988888888763 24555444333 334568899
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 499 LGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQL----PSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 499 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
+++|++.-++.. +.| |.-...++.-.+.-.|+.+++.+...+--..-. .-...|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998887 444 666667777777788899999998877544411 22334556666778889999999999
Q ss_pred HHHHhCCCccCC
Q 006580 573 KVMRKNGINKVT 584 (640)
Q Consensus 573 ~~m~~~~~~~~~ 584 (640)
++=.-+...++.
T Consensus 271 D~ei~k~l~k~D 282 (491)
T KOG2610|consen 271 DREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHhhccc
Confidence 876544444443
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=95.17 E-value=1.4 Score=43.56 Aligned_cols=143 Identities=6% Similarity=0.002 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 006580 428 AAETLDVFEELLE-EGLPPDRI-TLAAVLLACNY---------GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496 (640)
Q Consensus 428 ~~~a~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 496 (640)
.+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.+.-+...+ --+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 5678888888883 22566643 44444433221 2234456666665554 2345667777777777888
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCChHHHHHHH
Q 006580 497 GQLGKAIDITSTMP-FQPG-CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP--YSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 497 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~ 572 (640)
++++.|...|++.. ..|| ..+|......+.-.|+.++|.+.++++++++|....+ ....++.|+.. ..++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 88999999999987 6774 5677777788888999999999999999999955433 33444456644 466677765
Q ss_pred H
Q 006580 573 K 573 (640)
Q Consensus 573 ~ 573 (640)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.17 E-value=0.063 Score=31.40 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
..|..+...+...|++++|++.++++++++|.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566666777777777777777777776653
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=1.9 Score=38.48 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=88.9
Q ss_pred hHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHhccCCHHHHHHHH
Q 006580 397 IDSSTEIFVKLDKRD--LVSWNTIMMGLTQNGRAAETLDVFEELLE--EGLPPDRI--TLAAVLLACNYGGFVDKGMLVF 470 (640)
Q Consensus 397 ~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~--~~~~ll~~~~~~~~~~~A~~~~ 470 (640)
++.|--+.+++.+-+ +..|+.-...|..+|.++-|-..+++.-+ .++.|+.. .|..-+......++...|.
T Consensus 74 yEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~--- 150 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF--- 150 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---
Confidence 344444444444322 23455555666677776666655555433 22344432 2222222222222222222
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-------FQPGC-SIWESILRASAIYGDVKLTENVAERMM 542 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 542 (640)
..+......+.+..++++|-..+.+-. .-|+. ..+-+.+-.+....|+..|+..++.--
T Consensus 151 -------------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 151 -------------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred -------------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 234455566777777777776665543 12222 234555556666779999999998866
Q ss_pred hc----CCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 543 DL----QLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 543 ~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
+. .|.+..+...|+.+| ..|+.+++.+++
T Consensus 218 qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 218 QIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 55 456777788887666 478888887765
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.06 E-value=2.6 Score=38.33 Aligned_cols=198 Identities=16% Similarity=0.116 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLD-----KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 455 (640)
..........+...+++..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455556666777777777777766653 23445566666667777778888888888877433331 22222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcC
Q 006580 456 -ACNYGGFVDKGMLVFSAMKEEYGV--MPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP--GCSIWESILRASAIYG 529 (640)
Q Consensus 456 -~~~~~~~~~~A~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~ 529 (640)
.+...|+++.|...+...... .. ......+......+...++.+++...+.+.. ..+ ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 677888888888888887431 11 1223344444445667788888888888776 333 3667778888888888
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+++.|...+..+....|.....+..+...+...|.++++...++.......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 889999999999888887666667777777777778888888887776543
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=95.02 E-value=0.95 Score=37.88 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=66.4
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 533 (640)
-+-..|++++|..+|+-+..- + ..+..-+..|..++...+++++|+..|.... ..-|+...-.....+...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345789999999999987753 2 3345567788888888999999999987765 23355556667778888999999
Q ss_pred HHHHHHHHHh
Q 006580 534 TENVAERMMD 543 (640)
Q Consensus 534 a~~~~~~~~~ 543 (640)
|...|+.+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998887
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.02 E-value=2.9 Score=41.20 Aligned_cols=150 Identities=6% Similarity=-0.082 Sum_probs=85.9
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--hh
Q 006580 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP---DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG--EE 484 (640)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~ 484 (640)
....+|..+...+.+.|+++.|...+.++...+..+ .......-...+-..|+..+|+..++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 355678888899999999999999999888743221 2233334455566778889999988887763 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 485 HYACIIDLLCQAGQLGKAIDI-TSTMPFQPGCSIWESILRASAIY------GDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
....+...+.. ..+..... ........-...+..+..-+... ++.+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000122333344444444 78899999999999999988888888877
Q ss_pred HHHhc
Q 006580 558 AYAMR 562 (640)
Q Consensus 558 ~~~~~ 562 (640)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76554
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.01 E-value=0.053 Score=31.79 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777764
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.00 E-value=0.64 Score=46.80 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=35.8
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 493 LCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
..+.|+++.|.++.++.. +...|..|......+|+++.|++.+++. .-+..|.-.|.-.|+.+.-.++.
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHH
Confidence 344555555555444432 4445555555555555555555555552 23444444555555554444444
Q ss_pred HHHHhCC
Q 006580 573 KVMRKNG 579 (640)
Q Consensus 573 ~~m~~~~ 579 (640)
+....+|
T Consensus 397 ~~a~~~~ 403 (443)
T PF04053_consen 397 KIAEERG 403 (443)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 4444433
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.67 E-value=1.9 Score=42.88 Aligned_cols=150 Identities=10% Similarity=0.035 Sum_probs=88.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ 498 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 498 (640)
|.-.-+..+++.-++.-++..+ +.||..+.-.++ +--......++.+++++..+. + ...+..- ......|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc
Confidence 3333455567777777777776 567665433333 223345678888888876654 1 0011000 00001111
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 499 LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL--PSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
. .+.+..-...|-..+-..|...+.+.|+.++|.+.++.+++..| ++..+...|+..+...+.+.++..++.+..
T Consensus 246 ~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 F---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred h---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1 11111100123344445677777888999999999999988766 356788889999999999999999888875
Q ss_pred hCCC
Q 006580 577 KNGI 580 (640)
Q Consensus 577 ~~~~ 580 (640)
+...
T Consensus 323 Di~l 326 (539)
T PF04184_consen 323 DISL 326 (539)
T ss_pred cccC
Confidence 5433
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.65 E-value=0.37 Score=43.62 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=84.2
Q ss_pred HHHHHHhCC--CCChhHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 006580 400 STEIFVKLD--KRDLVSWNTIMMGLTQ-----NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG----------- 461 (640)
Q Consensus 400 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 461 (640)
.+..|.... ++|-.+|.+.+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 6777888888877754 3567777788899999999999999999999876643
Q ss_pred -----CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCC
Q 006580 462 -----FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL-GKAIDITSTMP 510 (640)
Q Consensus 462 -----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 510 (640)
+-+=++.++++|... |+.||.++-..|++++.+.+.. .+..+++--|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223478999999887 9999999999999999998864 34444444443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.62 E-value=0.35 Score=38.11 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=15.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 523 RASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
..|...|+.+.|..-|+.+.+++.+
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCH
Confidence 3455666667777666666666543
No 255
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.57 E-value=0.4 Score=38.61 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006580 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRAS 525 (640)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 525 (640)
|..++..++.++++.|+.+....+++.. +|+.++...- .+. +-..-+..|+..++.+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 3455666666777777776666666533 2443332110 000 000111456666666666666
Q ss_pred HHcCChHHHHHHHHHHHhcCC--CChhHHHHHH
Q 006580 526 AIYGDVKLTENVAERMMDLQL--PSPLPYSLLT 556 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~ 556 (640)
+..+++..|.++++...+..| -+...|..|.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 666666666666666666533 2234455444
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.56 E-value=1.3 Score=41.73 Aligned_cols=161 Identities=13% Similarity=0.042 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDR---ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEH 485 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~ 485 (640)
.|..+..++-+.-++.+++.+-+.-.. .|..|.. ....++..++...+.++++++.|+...+-..-..| ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444433332 2222211 22334455566666677777777665432111111 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-----CC-CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCC---
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP-----FQ-PG------CSIWESILRASAIYGDVKLTENVAERMMDL--QLPS--- 548 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~--- 548 (640)
+..|...|.+..++++|.-+..++. .. .| ..+.-.+.-++...|.+..|.+.-+++.++ ...|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6667777777777776665554432 11 11 112223445566677777777777776655 2222
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 549 -PLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 549 -~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
......++++|-..|+.+.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 33344677777777777766654443
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.40 E-value=0.99 Score=45.48 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=99.2
Q ss_pred HHhcCCChhHHHHHhc--cCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHH
Q 006580 90 GLLKSDNLDTALKVFD--EIP-EPDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQI 166 (640)
Q Consensus 90 ~~~~~~~~~~A~~~~~--~~~-~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~ 166 (640)
...-.++++++.+..+ ++. .-...-.+.++.-+-+.|.++.|+++.++-..
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------------------- 323 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------------------- 323 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------------------------
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------------------------
Confidence 3345667777544443 111 11244477778888888888888877655432
Q ss_pred HHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 006580 167 HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE 246 (640)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 246 (640)
--....+.|+++.|.++.++.. +...|..|.....+.|+++-|...|.+..+
T Consensus 324 -------------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------- 375 (443)
T PF04053_consen 324 -------------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD------- 375 (443)
T ss_dssp -------------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred -------------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------
Confidence 1234456788888888877766 556899999999999999999999988765
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 247 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
|..|+-.|...|+.++-.++.+.....|- ++....++.-.|+.++..+++.+.
T Consensus 376 --~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 --FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 56677777888888888888777776652 444555566667777777776554
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.39 E-value=1 Score=41.07 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHhHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCChHH
Q 006580 460 GGFVDKGMLVFSAMKEEYGVM-PGEEHYACIIDLLCQAGQLGKAIDITSTMP----FQP-GCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 460 ~~~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~ 533 (640)
.|++..|...|....+.+.-. -....+--|..++...|++++|..+|..+. ..| -+..+--|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 344555555555555432100 011223335555555555555555554443 112 34555556666666677777
Q ss_pred HHHHHHHHHhcCCCChhH
Q 006580 534 TENVAERMMDLQLPSPLP 551 (640)
Q Consensus 534 a~~~~~~~~~~~p~~~~~ 551 (640)
|...|+++++..|..+.+
T Consensus 234 A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 234 ACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHCCCCHHH
Confidence 777777777777765544
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.28 E-value=11 Score=41.94 Aligned_cols=113 Identities=13% Similarity=0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
.|.+....+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.+|+.+..++.. +-.--..+-..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence 333444444455666666555544322 11235566667777777777665532 1111111225566777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006580 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMM 542 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 542 (640)
...+++-+|-++..+....|.. .+..+++...+++|.++.....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 7778888887777776533321 2233344445555555555443
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=1.4 Score=41.10 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=115.6
Q ss_pred HhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHH
Q 006580 392 AKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA----VLLACNYGGFVD 464 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~ 464 (640)
...|+..+|-..++++.+ .|...+.--=.+|...|+.+.-...+++.... ..||...|.. +.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346778888888888773 37777777778899999999999999998875 4566644433 334456889999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHHcCChHHHHHH
Q 006580 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQP-----GCSIWESILRASAIYGDVKLTENV 537 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~a~~~ 537 (640)
+|.+.-++..+- -+.|.-.-.++...+.-.|++.++.++..+-. .+. ....|. ..-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhHHHHH
Confidence 999988876642 12334455567778888999999999998876 111 111222 22334456899999999
Q ss_pred HHHHHhc--CCCChhH---HHHHHHHHHhcCChHHHHHHH
Q 006580 538 AERMMDL--QLPSPLP---YSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 538 ~~~~~~~--~p~~~~~---~~~l~~~~~~~g~~~~a~~~~ 572 (640)
|++-+-. ..++... |..+--.....-.|.+-.++-
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 9876533 4455533 222333344444444444333
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.05 E-value=4.5 Score=36.66 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=93.2
Q ss_pred HhcCChHHHHHHHHhCCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc-----
Q 006580 392 AKTGSIDSSTEIFVKLDKR------DLVSWNTIMMGLTQNGRAAETLDVFEELLEEG-LPPDRITLAAVLLACNY----- 459 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~----- 459 (640)
.+.|++++|.+.|+.+... ...+--.++.++.+.+++++|+..+++....- -.|| ..|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 4566777777777766621 22234445566777788888888888777732 2222 234444444332
Q ss_pred --cCCHH---HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 006580 460 --GGFVD---KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 460 --~~~~~---~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
..+.. +|..-|+.+.++ -||..- ...|..-+..+. ..=...=..+...|.+.|.+..|
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---yPnS~Y-------------a~dA~~~i~~~~-d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---YPNSRY-------------APDAKARIVKLN-DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---CCCCcc-------------hhhHHHHHHHHH-HHHHHHHHHHHHHHHHhcChHHH
Confidence 12222 233333333332 222110 011111111000 00000012345778899999999
Q ss_pred HHHHHHHHhcCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 535 ENVAERMMDLQLPSPL---PYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..-++.+++..|..+. .+..+..+|.+.|..++|.+.-+-+...-
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 9999999999765544 45566788999999999998866665443
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.01 E-value=3 Score=34.50 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=38.0
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHH
Q 006580 251 IVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330 (640)
Q Consensus 251 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (640)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ .++..+.++. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444445555555555555544 244455555666655542 2233333331 1122223334444455555555
Q ss_pred HHHHHHHH
Q 006580 331 ALELFQLM 338 (640)
Q Consensus 331 a~~~~~~m 338 (640)
+..++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55555443
No 263
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.98 E-value=0.86 Score=36.34 Aligned_cols=67 Identities=9% Similarity=-0.066 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHh-cCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 513 PGCSIWESILRASAIYG---DVKLTENVAERMMD-LQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 513 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...+--.+.+++.+.. +..+.+.+++.+.+ ..| ........|+-++.+.|+|++++++.+.+.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 34444445555555443 45667777777776 334 233444556667888888888888888777643
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.71 E-value=0.15 Score=30.39 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 551 PYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999888854
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.70 E-value=5.3 Score=36.25 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=84.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGL--PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 496 (640)
+..-.+.|++++|.+.|+.+.++.. +-...+...++.++-+.+++++|+...++..+.++-.||.. |...+.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3445678999999999999987521 12345666777888899999999999999988777666654 333344443
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh-----------------HHHHHHHH
Q 006580 497 GQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL-----------------PYSLLTQA 558 (640)
Q Consensus 497 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 558 (640)
.|..+. ...|.. -...|..-++..++..|++.- .=..++..
T Consensus 118 --------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 111111 112333344444444443321 11256778
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 006580 559 YAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~ 578 (640)
|.+.|.|..|..-+++|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 88999999999988888876
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=8.9 Score=40.83 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006580 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338 (640)
Q Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 338 (640)
.-++..+.+..+.+.+..+.+...+.++..|-.+++.+++.+..+.-.+...+.
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 346667777777888888887777777888888888888877655554444433
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.58 E-value=0.31 Score=41.68 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..+..+.+.++.|+.-..++++++|....+...-+.+|.+..++++|++=++++.+..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3445556666666666666666666666666666666666666666666666666544
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.56 E-value=2.4 Score=34.68 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=66.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPP---DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ 495 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 495 (640)
.....+.|++++|.+.|+.+..+ .+. ....-..++.++.+.++++.|...+++..+.+...|+ ..|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34455677888888888887774 222 2245566777778888888888888887765333333 234444444443
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 006580 496 AGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL 550 (640)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 550 (640)
-...+..+.-+- ... ...+....|..-|++++...|++..
T Consensus 95 ~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 332221111111 011 1122356788888888888887753
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.50 E-value=0.5 Score=43.70 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.++..++..+...|+.+.+.+.+++++..+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556667777777788888888888888887778888888888888888888887777754
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.34 E-value=6 Score=35.82 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCh-hHHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDL-VSWNTIMM-GLTQNGRAAETLDVFEELLEEGLPP----DRITLA 451 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~ 451 (640)
....+......+...++...+...+..... ++. ........ .+...|+++.|...+.+... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344445555666667777788887777663 222 22333333 68889999999999999866 333 233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHc
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG-CSIWESILRASAIY 528 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~ 528 (640)
.....+...++.+.+...+...... ... ....+..+...+...+++++|...+.... ..|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 4444567788999999999988763 233 46778888888999999999999998877 4454 45566666666677
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 006580 529 GDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 529 ~~~~~a~~~~~~~~~~~p~ 547 (640)
+..+.+...+.+..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999999887
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.71 E-value=0.25 Score=41.25 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhH
Q 006580 20 QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDT 99 (640)
Q Consensus 20 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (640)
.+++.+.+.+.+.....+++.+...+...++...+.++..|++.++.+...++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45677888899999999999999888778899999999999999988999999885433 333345555555555555
Q ss_pred HHHHhccC
Q 006580 100 ALKVFDEI 107 (640)
Q Consensus 100 A~~~~~~~ 107 (640)
|.-++..+
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 55554443
No 272
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.71 E-value=16 Score=39.11 Aligned_cols=94 Identities=9% Similarity=-0.114 Sum_probs=55.8
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH
Q 006580 490 IDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL---PSPLPYSLLTQAYAMRGRWE 566 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~ 566 (640)
+..+...|....|...+..+....+......+.......|.++.+.....+....+. .-|..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 345667788888888777665345556666666666778888888777655433210 12334666666666655666
Q ss_pred HHHHHHHHHHhCCCccC
Q 006580 567 AIVRVKKVMRKNGINKV 583 (640)
Q Consensus 567 ~a~~~~~~m~~~~~~~~ 583 (640)
.+.-+-=-..+.++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 65543333345555554
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.70 E-value=0.25 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
+|..+...+...|++++|...++++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666655
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=16 Score=38.78 Aligned_cols=106 Identities=10% Similarity=-0.087 Sum_probs=62.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChH
Q 006580 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLY 197 (640)
Q Consensus 118 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 197 (640)
-|+.+.+.+.+++|++..+.-... .|.. .-..+....|..+...|+++
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~------------------------------~i~kv~~~yI~HLl~~~~y~ 409 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERF------------------------------VIKKVGKTYIDHLLFEGKYD 409 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--cccc------------------------------chHHHHHHHHHHHHhcchHH
Confidence 356677788888888776654321 2210 02334566777777778888
Q ss_pred HHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 006580 198 YAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258 (640)
Q Consensus 198 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 258 (640)
+|-...-.|...+..-|.-.+..+...++......+ +....-+.+...|..++..+..
T Consensus 410 ~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 410 EAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 888877777777777777666666666655433222 2221122344556666666554
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.63 E-value=0.23 Score=29.55 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888889999999999886544
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.49 E-value=0.42 Score=30.00 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 113 VSWNSMISGYASCGYSDYALEMFSKMQLQ 141 (640)
Q Consensus 113 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~ 141 (640)
.+|..+...|.+.|++++|+++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778889999999999999999999986
No 277
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=92.44 E-value=0.14 Score=40.49 Aligned_cols=38 Identities=34% Similarity=0.598 Sum_probs=29.4
Q ss_pred ceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCccCCCccc
Q 006580 585 GCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCVYLECDK 634 (640)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~p~~~~~ 634 (640)
|+||+++ +.|++|+.+||+. .+.+++...||.|++...
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~ 39 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEV 39 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhh
Confidence 6899987 9999999999988 355566667777766553
No 278
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.43 E-value=1.2 Score=29.32 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 006580 551 PYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627 (640)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 627 (640)
....++-++.+.|++++|.+..+.+.+.. |...++......+.++|+++|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence 34567779999999999999999998843 4555666666778888888884
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=19 Score=38.60 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=36.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEEL 438 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (640)
-++..+.+..+.+.+..+.+...+.++..|..+++.+++.+..+...+...+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 35666677777777777777777777778888888887777655554444433
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.12 E-value=1.3 Score=40.33 Aligned_cols=92 Identities=14% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHhccCC--CCCcchHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh----------------
Q 006580 102 KVFDEIP--EPDVVSWNSMISGYAS-----CGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS---------------- 158 (640)
Q Consensus 102 ~~~~~~~--~~~~~~y~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---------------- 158 (640)
+.|.... ++|-.+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|..|+..+-
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344444 3555566666555532 3556666666777777777777777777776543
Q ss_pred ---chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCC
Q 006580 159 ---SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194 (640)
Q Consensus 159 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 194 (640)
...-+..++++|...| +-||-.+-..|++++.+.+
T Consensus 135 YP~QQ~C~I~vLeqME~hG-VmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHG-VMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred CchhhhHHHHHHHHHHHcC-CCCchHHHHHHHHHhcccc
Confidence 2223444555555555 5555555555555554444
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.07 E-value=5.3 Score=31.96 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 416 NTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 416 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
...+..+..+|+-+.-.+++..+.+. -.|++.....+..||.+.|+..++.+++.+..++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33445555666666666666665542 2555555556666666666666666666666554
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.98 E-value=16 Score=37.48 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=69.7
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHhCCChHH
Q 006580 259 LRNLDKGKQVFALSVKVGFLSNSIVLSA-TIDLFSKCNRLEDSVRLFEQLDRW-------DYAVINVMISTYGRYGFGEV 330 (640)
Q Consensus 259 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~ 330 (640)
..+.+.+.++++.+.+. -|+...|.. -.+.+...|++++|++.|++.... ....+--+.-.+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777777777665 355554433 335666778888888888865431 12234445666777888889
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHhhCCC--CCh-------HHHHHHHHHHH
Q 006580 331 ALELFQLMLREDIRPTEFTLSCVLSSIPI--PPV-------EHGSQFHSMAI 373 (640)
Q Consensus 331 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~-------~~a~~~~~~~~ 373 (640)
|.+.|..+.+.. ..+..+|..+..+|.. ++. ++|..++.++.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 988888888753 3345555555555433 555 66666665554
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.84 E-value=1.5 Score=36.59 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=38.7
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 006580 495 QAGQLGKAIDITSTMP-FQPGCSIWE-SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 565 (640)
+.++.+++..++..+. .+|...... .-...+...|++.+|.++++.+.+..|..+..-..++.++...|+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4556666666666655 455433222 2234445566666666666666555555555545555555555544
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.78 E-value=7.1 Score=37.09 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=55.5
Q ss_pred hHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC-
Q 006580 397 IDSSTEIFVKLDK-------RDLVSWNTIMMGLTQNGR----AAETLDVFEELLEEGLPPDRI--TLAAVLLACNYGGF- 462 (640)
Q Consensus 397 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~- 462 (640)
..+|..+|+.|.+ ++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456667777663 233344444433 2222 355677888888878776553 33344433332222
Q ss_pred -HHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 463 -VDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 463 -~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
..++.++++.+.+. ++++...+|..+.-.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 44788888888887 8888888877665433
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.61 E-value=1.3 Score=36.28 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=24.9
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.++.+.++.++..+.-+.|..+..-..-++.+...|+|++|..+++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4444445555554444444444444444444445555555555554444433
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.29 E-value=0.46 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999987654
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.28 E-value=5.5 Score=34.43 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=48.2
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 568 (640)
.++.+.+.++.|++-..+.. +.| ....+.--..+|-+...++.|++-|+++++.+|....+-...+.+--....-.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 34455555555555554443 333 2222223344666777889999999999999987765544444333222222222
Q ss_pred H--HHHHHHHhCC
Q 006580 569 V--RVKKVMRKNG 579 (640)
Q Consensus 569 ~--~~~~~m~~~~ 579 (640)
. +++.++++.|
T Consensus 222 mKee~m~kLKdlG 234 (271)
T KOG4234|consen 222 MKEEMMEKLKDLG 234 (271)
T ss_pred HHHHHHHHHHHhh
Confidence 2 3555555544
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.20 E-value=6.6 Score=33.32 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=67.3
Q ss_pred hcCCCCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHH
Q 006580 8 AHVNKASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNIC 87 (640)
Q Consensus 8 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 87 (640)
..+.+|+...+..++..+.+.|.+....+ +...++-+|.......+-.+. +.+..+.++--.|..+=...+..+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~~~~~i 95 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGTAYEEI 95 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhhhHHHH
Confidence 45566666777777777777776544333 333443343333332222221 222223322222222212245556
Q ss_pred HHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 88 LRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141 (640)
Q Consensus 88 l~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~ 141 (640)
+..+...|++-+|.++.+....-+......++.+-...+|...-..+|+-..+.
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666777777777777776665555555566666666666666555555555443
No 289
>PRK09687 putative lyase; Provisional
Probab=91.18 E-value=14 Score=34.97 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=11.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 006580 417 TIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
..+.++...|.. +|+..+..+..
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344455555553 45555555554
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.14 E-value=6.4 Score=34.09 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh------hH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI--TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE------EH 485 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~------~~ 485 (640)
.+..+...|++.|+.+.|++.|.++.+....|... .+..+++.+...+++..+...+.+.........+. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455556666666666666666666544444332 34445555555666666666555554321111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
|..|. +...+++.+|-+.|-...
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22221 234566776666665554
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.12 E-value=0.65 Score=43.28 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=79.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 006580 454 LLACNYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGD 530 (640)
Q Consensus 454 l~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 530 (640)
.+-|.++|.+++|+..|..-.. +.| ++.++..-..+|.+.+++..|+.-.+.+. .+.-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568889999999999987663 455 78888888899999999998887766654 11123345555555556788
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 531 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
..+|.+-++.++++.|.+. -|-..+.......++.-+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 9999999999999999864 3444555555555554433
No 292
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.09 E-value=4.5 Score=39.86 Aligned_cols=86 Identities=12% Similarity=-0.005 Sum_probs=38.5
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006580 494 CQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 571 (640)
...|+++.+...+.... +.....+...++......|+++.|....+-|+.....++......+-.--..|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 34444454444444433 2223334444444444445555555555555544444433333333233334445555555
Q ss_pred HHHHHhCC
Q 006580 572 KKVMRKNG 579 (640)
Q Consensus 572 ~~~m~~~~ 579 (640)
|+++....
T Consensus 414 wk~~~~~~ 421 (831)
T PRK15180 414 WKRVLLLN 421 (831)
T ss_pred HHHHhccC
Confidence 55554433
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.08 E-value=14 Score=36.32 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL----PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...+|..++..+.+.|+++.|...+.++...++ ..+.....-+..+...|+..+|...++......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 566899999999999999999999999998753 246667777889999999999999999888743
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.80 E-value=14 Score=34.26 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
+++.....|...|.+.+|.++-++++.++|-+...+..|+..+...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455567889999999999999999999999999999999999999998888888887753
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.54 E-value=0.61 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999988754
No 296
>PRK09687 putative lyase; Provisional
Probab=90.51 E-value=16 Score=34.55 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=12.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 520 SILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444444542 45555555555444
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.32 E-value=6.4 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=23.5
Q ss_pred cCCChHHHHHHHhccCCCCeeeHHHHH-----HHHHhcCChhHHHHHHHHhHH
Q 006580 192 KLGVLYYAFGVFLNMEELDIISWNSLI-----SGCFNSGYGELALDQFYSMRY 239 (640)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~A~~~~~~m~~ 239 (640)
+.+..++|+.-|..+.+.+-..|-.|. ....+.|+...|...|.+.-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 344555555555555544444443332 223445555555555555543
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.17 E-value=1.6 Score=40.79 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=63.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG 497 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 497 (640)
..-|.+.|++++|+..|.+... +.| |.+++..-..+|.+...+..|..-....... + ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 3569999999999999999887 567 8899999999999999998888776665532 0 001123333333334445
Q ss_pred ChHHHHHHHHhCC-CCCC
Q 006580 498 QLGKAIDITSTMP-FQPG 514 (640)
Q Consensus 498 ~~~~A~~~~~~~~-~~~~ 514 (640)
...+|.+-++... ..|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 5666666665554 6665
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.16 E-value=10 Score=31.80 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=58.8
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-CIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
-...++.+++..++..+.- +.|...... .-...+.+.|++.+|..+|+++. ..|....-..|+..|....+-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3456677777777777653 344432221 22334567778888888887776 444555555666666655544444
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
....+++++.+++. .+ ..|+..+....+...|..
T Consensus 97 r~~A~evle~~~d~-~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 97 RRYADEVLESGADP-DA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHhcCCCh-HH-HHHHHHHHHhccccchhh
Confidence 55555555555422 22 233444444444444433
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.15 E-value=30 Score=37.20 Aligned_cols=49 Identities=4% Similarity=-0.126 Sum_probs=21.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006580 289 DLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338 (640)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 338 (640)
..+.+.++++...+++.. ...+...-.....+....|+.++|....+.+
T Consensus 107 ~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 107 NELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334445555555542211 1223333344445555555555454444443
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.07 E-value=17 Score=34.32 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=10.9
Q ss_pred HHHhCCChHHHHHHHHH
Q 006580 321 TYGRYGFGEVALELFQL 337 (640)
Q Consensus 321 ~~~~~~~~~~a~~~~~~ 337 (640)
.+.+.++++.|.+.|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34556777777777664
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.78 E-value=0.79 Score=28.10 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMD 543 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 543 (640)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444445555555555555544443
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=6.2 Score=35.36 Aligned_cols=167 Identities=6% Similarity=-0.005 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006580 384 ASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460 (640)
Q Consensus 384 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 460 (640)
|..-..+|-...++++|...+.+.. +.+...|. ..+.++.|.-+.++|.+ ++.-...|.-....|...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~k--lsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSK--LSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHh
Confidence 3334445555666666665555443 11222221 12234555555555554 222223445555566666
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC------CHHHHHHHHHHHHHcCChH
Q 006580 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQP------GCSIWESILRASAIYGDVK 532 (640)
Q Consensus 461 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~------~~~~~~~l~~~~~~~~~~~ 532 (640)
|..+.|-..+++.-+. ....++++|++++++.. +.. -...+......+.+...++
T Consensus 105 GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred CCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 6666666655554331 22334444555444432 111 1223344455666666777
Q ss_pred HHHHHHHHHHhcC------CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 533 LTENVAERMMDLQ------LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 533 ~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+|-..+.+-.... +.--..|...+-.|.-..++..|.+.++.-.
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 7777766655551 1222346666667777778888887776443
No 304
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.54 E-value=35 Score=37.05 Aligned_cols=187 Identities=16% Similarity=0.178 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHhCC----CCCh-------hHHHHHHH-HHHhCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLD----KRDL-------VSWNTIMM-GLTQNGRAAETLDVFEELLEE----GLPPDRITLAAVLL 455 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 455 (640)
....++.+|..++.+.. .|+. ..|+.+-. .....|++++|+++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34556666666665543 2221 13443322 233467788888877776653 11233345555666
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHH-----HHHHhcCChHHHH--HHHHhCC-----CCC----CHHHHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII-----DLLCQAGQLGKAI--DITSTMP-----FQP----GCSIWE 519 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~A~--~~~~~~~-----~~~----~~~~~~ 519 (640)
+..-.|++++|..+.+...+. .-..+...+..+. ..+...|+...+. ..+.... .+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 666678888887777665543 2233433333222 2344556332222 2222111 122 123344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc----CCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 006580 520 SILRASAIYGDVKLTENVAERMMDL----QLPS---PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINK 582 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 582 (640)
.+..++.+ ++.+..-....++. .|.. ...+..|+.++...|+.++|...+.++.......
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44444444 44444444444433 2211 1222367788888888888888888887654433
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.40 E-value=26 Score=35.34 Aligned_cols=172 Identities=6% Similarity=0.107 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA-AVLLA 456 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~ 456 (640)
|....-+++..+..+..+.-.+.+-.+|. ..+-..|-.++++|... ..+.-..+|+++.+. .-|...+. .|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 33334445555555555555555555554 23445566666666666 455566677766663 23333333 33333
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPG------EEHYACIIDLLCQAGQLGKAIDITSTMP----FQPGCSIWESILRASA 526 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~ 526 (640)
|. .++.+.+..+|.++..+ +.|. .+.|..|+... ..+.+....+..++. ...-...+.-+..-|.
T Consensus 142 yE-kik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YE-KIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HH-HhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33 36666666666666543 2221 12344433321 234444444444443 1222334444455566
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
...++++|++++..+++.+..|..+-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 667777777777777777666655555554433
No 306
>PRK10941 hypothetical protein; Provisional
Probab=89.34 E-value=4 Score=38.00 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..+.+-.+|.+.++++.|.++.+.++...|+++.-+..-+-+|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 457777889999999999999999999999999999999999999999999999999888765
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.11 E-value=14 Score=33.69 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=113.2
Q ss_pred cCChHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHhccC
Q 006580 394 TGSIDSSTEIFVKLDK-------RDLVSWNTIMMGLTQNGRAAETLDVFEELLE---EGLP--PDRITLAAVLLACNYGG 461 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~--p~~~~~~~ll~~~~~~~ 461 (640)
..++++|..-|.++.+ ......-.++..+.+.|++++.++.+.+|.. ..+. -+..+.+.++..-+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777776652 2334556678888899999999888888764 1122 23456777777666666
Q ss_pred CHHHHHHHHHHhHHhh----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-------HHHHHHHHH
Q 006580 462 FVDKGMLVFSAMKEEY----GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-------FQPG-------CSIWESILR 523 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-------~~~~~~l~~ 523 (640)
+.+.-..+++.-.+.. +-+....+-..|...|...|.+.+..++++.+. ...| ..+|..-++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6665555554433221 222333445567777877788877777776653 1111 345666678
Q ss_pred HHHHcCChHHHHHHHHHHHhcC--CCChhHHHHH----HHHHHhcCChHHHHH
Q 006580 524 ASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLL----TQAYAMRGRWEAIVR 570 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l----~~~~~~~g~~~~a~~ 570 (640)
.|..+++-..-..+|++++... .|+|.+.-.+ +....+.|+|++|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 8888889899999999998773 3555544333 335567788888865
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.84 E-value=14 Score=31.47 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006580 268 VFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303 (640)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (640)
.++.+.+.+++|+...+..+++.+.+.|++..-..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444556666666666666666665555443333
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.67 E-value=0.98 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
.+++.|+..|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999998753
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.60 E-value=0.68 Score=27.08 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHhCCCCCchhHHHHHHHhhhcCCChHHHH
Q 006580 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAF 200 (640)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 200 (640)
+..++. .|.+...|+.|...|...|++++|+
T Consensus 3 ~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344455 6888999999999999999998885
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.57 E-value=5.8 Score=34.38 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCh------hH
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP---FQP--GCSIWESILRASAIYGDVKLTENVAERMMDL--QLPSP------LP 551 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~------~~ 551 (640)
.+..+.+.|.+.|+.++|.+.+.++. ..+ -...+-.++..+...+++..+...+.++... .+.+. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566677777777777777777765 122 2345666777777788888888888777766 22222 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 006580 552 YSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
|..| .+...|++.+|.+.|-.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHc
Confidence 2222 44567888888887743
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.54 E-value=3.4 Score=35.97 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=54.7
Q ss_pred HhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChH
Q 006580 494 CQAGQLGKAIDITSTMPFQP---GCSIWESILRASAIYGDVKLTENVAERMMDLQ----LPSPLPYSLLTQAYAMRGRWE 566 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~ 566 (640)
.+.|+ ++|.+.|-.+...| ++.....|.. |-...|.++++.++-+++++. ..|+..+..|+.+|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44555 56777776666333 4444444444 445789999999999999983 357899999999999999999
Q ss_pred HHHH
Q 006580 567 AIVR 570 (640)
Q Consensus 567 ~a~~ 570 (640)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8853
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.41 E-value=5.7 Score=36.96 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCChhHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE----EYGVMPGEEHYACI 489 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~p~~~~~~~l 489 (640)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555555555555555555531 33445555555555555555555555555443 23555555544443
Q ss_pred HH
Q 006580 490 ID 491 (640)
Q Consensus 490 ~~ 491 (640)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.41 E-value=17 Score=32.05 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 006580 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490 (640)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 490 (640)
+..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++--.|++.-|.+-+...-+.-.-.|-...|-.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl- 175 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL- 175 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-
Confidence 345666666666777777777777777663 3322 222222223334566776666555444321111111122111
Q ss_pred HHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhc
Q 006580 491 DLLCQAGQLGKAIDIT-STMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS-------PLPYSLLTQAYAMR 562 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 562 (640)
-.+.-++.+|..-+ ++.. ..|..-|..-+-.+.- |+.. .+.+++++.+--.++ ..+|.-|+.-+...
T Consensus 176 --~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 176 --NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 12233455554333 3333 3444445443332211 1111 123333333332222 35788889999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 006580 563 GRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 563 g~~~~a~~~~~~m~~~~~ 580 (640)
|+.++|..+|+.....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999998877653
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.30 E-value=1.1 Score=25.69 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
..++.++.+.|++++|.+.++++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444455555555555555555444
No 316
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.12 E-value=5.4 Score=37.86 Aligned_cols=165 Identities=12% Similarity=-0.041 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHH----HHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---hh
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFE----ELLEEG-LPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG---EE 484 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~----~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~ 484 (640)
.++..+..+.+..|.+++++..-- -..+.. -..-...|..+.+++.+..++.+++.+-+.-....|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 355666677777888777665322 122110 0011235566666666666666777666554433344341 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC------CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCh---
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP------FQP--GCSIWESILRASAIYGDVKLTENVAERMMDL----QLPSP--- 549 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~--- 549 (640)
....+..++.-.+.++++++.|+.+. ..| ...++-.|...+.+.+|+++|..+..++.++ ..++.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 33446667777788999999998865 122 2457888899999999999999999998877 22332
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 550 ---LPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 550 ---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.....++-++-..|+..+|.+.-++..+
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 2345677788889999999888777654
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=14 Score=37.85 Aligned_cols=150 Identities=14% Similarity=0.079 Sum_probs=102.1
Q ss_pred HhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 471 (640)
.-.|+++.|..++-.+.++ ..+.++.-+-+.|-.++|+++ .+|..-. .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 4467777777776666633 334455556667777776653 3333211 122346788998888766
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 472 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
+.. +..-|..|.++....|++..|.+-|.+.. -|..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 542 45568999999999999999999988764 356677777778887776677666666666653
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 006580 552 YSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
...+|...|+++++.+++.+
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHh
Confidence 33467789999999888753
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.98 E-value=17 Score=31.54 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHH---
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAA--VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYAC--- 488 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~--- 488 (640)
.|..++.... .+.+ +.....+++...+-+....++.. +...+...+++++|...++..... |....+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHH
Confidence 3444554433 3333 55556666665421222222322 234567778888888887765532 33333333
Q ss_pred --HHHHHHhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 489 --IIDLLCQAGQLGKAIDITSTMPFQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 489 --l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
|.......|.+++|++.++... .++ ......-...+...|+-++|...|+++++.++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 3455667788888888887765 222 22233445667777888888888888877763
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.98 E-value=0.83 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHH
Q 006580 550 LPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677778888888888877765
No 320
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.82 E-value=2.4 Score=39.24 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=65.1
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-CC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006580 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-KR------DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI 448 (640)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 448 (640)
|.+....+...++..-....+++++...+-++. .| +...+ +.++.+ -.=++++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334444444555555555666777777666665 22 21111 122222 2336778888888888889999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
++..+++.+.+.+++..|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999888887777654
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=43 Score=35.72 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCCCCh
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 412 (640)
.+...|+..|...+++.+|..++-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3445588999999999999999988886544
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.28 E-value=0.92 Score=25.98 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 518 WESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 518 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
+-.+...+.+.|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456778888999999999999999998864
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.72 E-value=6.9 Score=32.16 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=45.4
Q ss_pred HHHHHHHHHH---HhccCCHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHH
Q 006580 447 RITLAAVLLA---CNYGGFVDKGMLVFSAMKEEYGVMPGE---EHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWE 519 (640)
Q Consensus 447 ~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 519 (640)
....+.|+.. -...++.+++..+++.|.- +.|+. .++.. ..+...|++.+|..+|++.. ..+....-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 3444444443 3457788888888888764 34443 33333 34567888888888888887 333444444
Q ss_pred HHHHHHHH
Q 006580 520 SILRASAI 527 (640)
Q Consensus 520 ~l~~~~~~ 527 (640)
.|...|..
T Consensus 82 AL~A~CL~ 89 (153)
T TIGR02561 82 ALLALCLN 89 (153)
T ss_pred HHHHHHHH
Confidence 55555544
No 324
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.43 E-value=43 Score=34.56 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCC---CChhhHHHHHHH
Q 006580 14 SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ---KNCISWNICLRG 90 (640)
Q Consensus 14 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~ 90 (640)
+...+..|+.---....++.+..+++.++..- |.--..|......=.+.|..+.+..+|++-.+ .++..|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33445566666555666677777777777542 22223345555555677999999999998765 344455555554
Q ss_pred Hh-cCCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 91 LL-KSDNLDTALKVFDEIPE------PDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141 (640)
Q Consensus 91 ~~-~~~~~~~A~~~~~~~~~------~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~ 141 (640)
++ ..|+.+...+.|+.... .+...|...|..-..++++.....+|++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 45677777777877653 45567888888888889999999999999875
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.38 E-value=1.9 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 550 LPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
No 326
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.31 E-value=1.4 Score=43.48 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP-FQPGCSIWESI-LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 568 (640)
+-+...+.++.|..++.++. ..|+...|-+. ..++.+.+++..|+.=+.++++.+|.....|..=+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 33456677788888887776 67755544333 37788889999999999999999998888898888899999999999
Q ss_pred HHHHHHHHh
Q 006580 569 VRVKKVMRK 577 (640)
Q Consensus 569 ~~~~~~m~~ 577 (640)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 998886655
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.62 E-value=26 Score=31.36 Aligned_cols=57 Identities=9% Similarity=-0.016 Sum_probs=31.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhH-------HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 523 RASAIYGDVKLTENVAERMMDLQLPSPLP-------YSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..-...+++.+|..+|+++.....+|+.. +..-+-++.-.++.-.+...+++..+..
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 33345677888888888877665544322 2222223333355555666666555543
No 328
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.85 E-value=23 Score=30.04 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChh-HHHHH--
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE-HYACI-- 489 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l-- 489 (640)
.|..-++ +.+.++.++|+.-|..+.+.|...=+. ............|+...|...|+++-.. .-.|-.. -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHH
Confidence 3444333 456778888999998888876443222 2222333456788888999999988765 3333222 11222
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 490 IDLLCQAGQLGKAIDITSTMP--FQP-GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
.-++...|.+++....++-+. ..| ....-..|.-+-.+.|++..|...|+++...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 223567788888877777665 222 3455667777778889999999998888763
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.69 E-value=36 Score=32.15 Aligned_cols=18 Identities=6% Similarity=-0.210 Sum_probs=12.3
Q ss_pred HHHcCChHHHHHHHHHHH
Q 006580 525 SAIYGDVKLTENVAERMM 542 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~ 542 (640)
+.+.++++.|.+.|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 345678888888877544
No 330
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=2.9 Score=37.16 Aligned_cols=85 Identities=11% Similarity=-0.020 Sum_probs=43.3
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHHcCChHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEH-YACIIDLLCQAGQLGKAIDITSTMP-FQPGCS-IWESILRASAIYGDVKL 533 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~ 533 (640)
|.....++.|+..|.+.. -+.|+..+ |..-+..+.+..+++.+..--.+.. +.|+.. ..-.+.........++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555444 34555533 3344445555566665555444443 444433 33333444445556666
Q ss_pred HHHHHHHHHhc
Q 006580 534 TENVAERMMDL 544 (640)
Q Consensus 534 a~~~~~~~~~~ 544 (640)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666444
No 331
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.04 E-value=40 Score=32.12 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHH
Q 006580 129 DYALEMFSKMQLQGVRPSGFTFSI 152 (640)
Q Consensus 129 ~~a~~~~~~m~~~g~~p~~~t~~~ 152 (640)
+..+.+++.|.+.|++-+..+|.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHH
Confidence 455667777777777776666644
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.90 E-value=12 Score=38.33 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=71.9
Q ss_pred hhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 006580 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269 (640)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 269 (640)
..+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 345677888887765543 556788999999999999999999887765 556777777888877777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
....+.|. .|.-..+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 76666663 222333566677888777776554
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.34 E-value=5.9 Score=30.00 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 430 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
+..+-++.+....+.|++......+++|-+.+++..|+++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666677889999889999999999999999999998877533 33336666654
No 334
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.25 E-value=62 Score=34.25 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=66.8
Q ss_pred hCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcc----C-CHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 424 QNGRAAETLDVFEELLE-------EGLPPDRITLAAVLLACNYG----G-FVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 424 ~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~----~-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
...+.+.|+.+|+.+.+ .|.++ ....+..+|.+. . +.+.|..++....+. | .|+....-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 34455555555555544 33111 233334444432 1 455566666655443 2 222222211111
Q ss_pred HHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHHH--H--HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChH
Q 006580 492 LLCQ-AGQLGKAIDITSTMPFQPGCSIWESILRAS--A--IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWE 566 (640)
Q Consensus 492 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~--~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 566 (640)
.... -.+...|.++|..+...-+...+-.+...| . ...+.+.|..+++++.+.+++....-......+.. ++++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-cccc
Confidence 1111 134556666666654222222222222111 1 23467777777777777763322222222222233 6666
Q ss_pred HHHHHHHHHHhCCC
Q 006580 567 AIVRVKKVMRKNGI 580 (640)
Q Consensus 567 ~a~~~~~~m~~~~~ 580 (640)
.+.-.+..+.+.|.
T Consensus 415 ~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 415 TALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666655554
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.98 E-value=18 Score=27.36 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhC
Q 006580 262 LDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341 (640)
Q Consensus 262 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 341 (640)
-++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444433311 22333334456778899999999998888889888887754 3566667777777777766
Q ss_pred CCCCChhhHH
Q 006580 342 DIRPTEFTLS 351 (640)
Q Consensus 342 ~~~p~~~t~~ 351 (640)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 45444443
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.68 E-value=2.5 Score=23.34 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 552 YSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
|..++..+...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 337
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.33 E-value=4.3 Score=26.67 Aligned_cols=35 Identities=6% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 006580 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553 (640)
Q Consensus 519 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 553 (640)
-.+.-++.+.|+++.|.+..+.+++.+|.|..+-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34566788999999999999999999999865533
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.10 E-value=5 Score=34.17 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 531 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
+++|+.-+++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345566666666667777777777777776554
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.58 E-value=1.1 Score=37.30 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHH
Q 006580 252 VINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVA 331 (640)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (640)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455556666666666777776665555667777777777777666666666663222 2334455666666666666
Q ss_pred HHHHHHHh
Q 006580 332 LELFQLML 339 (640)
Q Consensus 332 ~~~~~~m~ 339 (640)
..++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66666543
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.55 E-value=6.3 Score=34.65 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh---hHHHHHHH
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP---LPYSLLTQ 557 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 557 (640)
...-+..+.+.+.+.+|+...+.-. .+| |...-..++..++-.|++++|..-++-+-++.|... ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3444667788889999998877654 566 677788899999999999999999999988888543 34555543
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.48 E-value=82 Score=33.87 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 006580 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158 (640)
Q Consensus 111 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 158 (640)
+...--.+|--|.|.|++++|.++..+.... .......|...+..+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~ 156 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYA 156 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHH
Confidence 4555667888899999999999999666543 3444445555555443
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.15 E-value=59 Score=32.06 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=50.9
Q ss_pred CHHHHHHH---HHHHHHcCChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 006580 514 GCSIWESI---LRASAIYGDVKLTENVAERMMDLQLP-SPLPYSLLTQAYA-MRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 514 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 577 (640)
|...|.++ +..+.+.|-+.-|.++.+-+..++|. ||..-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444443 56677889999999999999999997 8888788888775 78899888888887665
No 343
>PRK12798 chemotaxis protein; Reviewed
Probab=80.81 E-value=62 Score=32.04 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=101.2
Q ss_pred cCChHHHHHHHHhCCC----CChhHHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 006580 394 TGSIDSSTEIFVKLDK----RDLVSWNTIMMG-LTQNGRAAETLDVFEELLEEGLPPDR----ITLAAVLLACNYGGFVD 464 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~ 464 (640)
.|+.+++.+.|..+.. +....|-.|+.+ .....++..|+++|+...- .-|-. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888872 355567677665 3445689999999998876 34443 23444445567889999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHH-HHHHHHhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 006580 465 KGMLVFSAMKEEYGVMPGEEHYAC-IIDLLCQA---GQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
++..+-.....+|...|-...|.. +..++.+. -..+.-..++..|.-.--...|..+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777776666665444333 23333333 23455555666654111355788888888899999999999999
Q ss_pred HHhcC
Q 006580 541 MMDLQ 545 (640)
Q Consensus 541 ~~~~~ 545 (640)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 99884
No 344
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.55 E-value=5.1 Score=40.59 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=75.0
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPG--EEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
..|+...|...+.... ...|- ......|.+.+.+.|-...|-.++.... ..-.+-++-.+..++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4688888888887665 33443 2345566777778888888888877665 333456777888899999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
++.++++.+++|+++.+-+.|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999998888766555
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.13 E-value=14 Score=27.68 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
.-|++.+..+.+.+|++.+|+..|.++++-+......+...|..+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 678888888888888888888888888887775544344455544
No 346
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.11 E-value=29 Score=32.37 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 513 PGCSIWESILRASAIYGDVKLTENVAERMMDL-QL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
++..+....+..++..+++.+-.++++..... .| .|...|..++....+.|+. .+.+++...|.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~----~~~~kiI~~Gh 265 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ----EVMRKIIDDGH 265 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH----HHHHHHhhCCC
Confidence 34444444445555555555555555554444 22 4556666666666666664 34455555663
No 347
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.87 E-value=1.1 Score=41.94 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=57.1
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 495 QAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
..|.+++|++.+.... ..| ....+.--.+++.+.++...|++-+..+++++|+....|-.-..+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3455666666666554 333 33444444556666667777777777777777776666666666666677777777777
Q ss_pred HHHHhCCCccCC
Q 006580 573 KVMRKNGINKVT 584 (640)
Q Consensus 573 ~~m~~~~~~~~~ 584 (640)
....+.+++...
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 777766665544
No 348
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.58 E-value=44 Score=29.63 Aligned_cols=163 Identities=11% Similarity=0.037 Sum_probs=96.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChh-HHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLV-SWNTIMM--GLTQNGRAAETLDVFEELLEEGLPPDR--ITLAA 452 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ 452 (640)
|.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=. ++.-.|++.-|.+-+.+.-... +.|+ ..|..
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHH
Confidence 334678898888889999999999999998865443 2322222 2345689999988777776642 2222 22222
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCCCCCC-------HHHHHHHHHH
Q 006580 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG-QLGKAIDITSTMPFQPG-------CSIWESILRA 524 (640)
Q Consensus 453 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-------~~~~~~l~~~ 524 (640)
+. ...-++.+|..-+.+-.+ ..|..-|...+-.|.-.. ..+.+.+-...-. ..+ ..+|--|..-
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADA-TDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Confidence 22 233456666654443222 234445554443332211 1222222222111 111 3467778888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
+...|+.++|..+|+-++..+.-|.
T Consensus 247 ~l~~G~~~~A~~LfKLaiannVynf 271 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNVYNF 271 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhHHHH
Confidence 8899999999999999998866443
No 349
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.48 E-value=1.2e+02 Score=34.54 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=26.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHh
Q 006580 279 SNSIVLSATIDLFSKCNRLEDSV-RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLML 339 (640)
Q Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 339 (640)
+|..+....+..+.+.|..+.+. .+...+..++..+-...+.++...+. +++...+..+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 34555555555555555543332 22233333444344444445544443 23334444443
No 350
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.19 E-value=1e+02 Score=33.65 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=82.5
Q ss_pred HHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 006580 56 CLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135 (640)
Q Consensus 56 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~ 135 (640)
+=..|...|+++.|.++-..-+..-..++..-...+.+.+++..|-+++.++. .+|..+.--+....+.+ ++..|
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HHHHH
Confidence 33566777888888777665422111233334455667778888888877763 33444444444444444 33333
Q ss_pred HHHHHCCCCCChhhHHHHHHHHh---------chh----HHHH--------HHHHHHHhCCCCCchhHHHHHHHhhhcCC
Q 006580 136 SKMQLQGVRPSGFTFSILLSTVS---------SAC----HGKQ--------IHGSMIRSGLSLSNVVLGNSLIDMYGKLG 194 (640)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~---------~~~----~a~~--------~~~~~~~~~~~~~~~~~~~~li~~~~~~g 194 (640)
-.=+-..++|...+-..++.... +++ .+.+ +.+.+.+......+...+.+........|
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 22222233444433333222221 111 1110 10111111101112233344445555566
Q ss_pred ChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHh
Q 006580 195 VLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSM 237 (640)
Q Consensus 195 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 237 (640)
+.+.+..+-.-|. -|..++..+.+.+.+++|++++..-
T Consensus 519 ~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 519 RQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666655544433 2556777777778888887777554
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.95 E-value=52 Score=30.13 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=83.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC---------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHH
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDK---------------RDLVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDRIT 449 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~ 449 (640)
-|...|...|.+.+...+++.+.+ .-...|..=|+.|...++-.....++++...- .--|-+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 355556666666666666665541 01235666678888888877777888876652 12344433
Q ss_pred HHHHHHHH-----hccCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHH--hCC---CCCC
Q 006580 450 LAAVLLAC-----NYGGFVDKGMLVFSAMKEEYGVMPG-----EEHYACIIDLLCQAGQLGKAIDITS--TMP---FQPG 514 (640)
Q Consensus 450 ~~~ll~~~-----~~~~~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~--~~~---~~~~ 514 (640)
. .+++-| .+.|.+++|-.-|=+..+.+.-.-+ .--|-.|.+++.++|-- -|+ ++. ..|.
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPE 303 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPE 303 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHH
Confidence 3 344444 3567777765433333333222222 12355566666666520 011 111 3444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
......|+.+|.. ++..+-++++..-.....++|.+
T Consensus 304 IlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 304 ILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHH
Confidence 5577888888865 34544444444333333344443
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.92 E-value=4.4 Score=25.35 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..|+.+|...|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999998655
No 353
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.88 E-value=92 Score=33.25 Aligned_cols=187 Identities=18% Similarity=0.220 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCCh----------hhHHHHHhhCCC-CChHHHHHHHHHHHHhC--CCCc
Q 006580 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTE----------FTLSCVLSSIPI-PPVEHGSQFHSMAIKSG--FDSN 380 (640)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~--~~~~ 380 (640)
+-..++-.|-...+++...++.+.+.+. ||. +.|...+..-.+ |+-++|....--+++.. +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3445666777788888888888888763 322 223334444444 77777776665555432 2333
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT---LAAVLLAC 457 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~ 457 (640)
+||-+|++ |++|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 34445542 22221 11234445566778888888877 6777653 44444432
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006580 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENV 537 (640)
Q Consensus 458 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 537 (640)
.+ .++...++ ..- | -.|-..+++.|.+++..++++-. ..+.+-.-.+|+.+|.+.
T Consensus 334 G~--~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 22 12222111 110 1 12334567888888877777543 233444556789999999
Q ss_pred HHHHHhcCCCChhHHHH
Q 006580 538 AERMMDLQLPSPLPYSL 554 (640)
Q Consensus 538 ~~~~~~~~p~~~~~~~~ 554 (640)
.+.|.++.||.-..-..
T Consensus 389 ae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 389 AEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHhccCCceehHHHH
Confidence 99999999877544333
No 354
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.75 E-value=26 Score=26.43 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 428 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
.-++.+-++.+....+.|++......++||-+.+++..|+++|+.++.+ ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3456666677777778899888889999999999999999999887754 2224445655543
No 355
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.31 E-value=59 Score=30.34 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=76.1
Q ss_pred cCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHH----hHHCCCCCCcchHHHHHHHHhccCCch-HHH
Q 006580 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYS----MRYSGYSPDEYTISIVINACTKLRNLD-KGK 266 (640)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 266 (640)
+.+++++|.+++.. =...+.+.|+...|-++-.- ..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566777766532 23445666666555444333 344566666666555655555443221 233
Q ss_pred HHHHHHHHh---C--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhC
Q 006580 267 QVFALSVKV---G--FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341 (640)
Q Consensus 267 ~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 341 (640)
++.+.+++. | ..-++.....+...|.+.|++.+|...|-.-..++...+..++.-....|...+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------- 139 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------- 139 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-----------
Confidence 444444432 2 123667788888999999999999888755444333333223322222222222
Q ss_pred CCCCChhhHHHHHhhCCCCChHHHHHHHHHHHH
Q 006580 342 DIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIK 374 (640)
Q Consensus 342 ~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~ 374 (640)
+|...-..++..++.+++..|...+....+
T Consensus 140 ---~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 140 ---ADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 223333344444444666666655544443
No 356
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.89 E-value=48 Score=30.01 Aligned_cols=59 Identities=5% Similarity=-0.183 Sum_probs=49.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..+.+...|++-++++.-..++...|.|..+|..-+.+.+..=+..+|..=+....+..
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33445567899999999999999999999999999999988888899998888887754
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.81 E-value=1.9e+02 Score=35.86 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
..+|....+.++..|.++.|...+-++.+..+ +..+.-.+..+...|+...|..++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 56899999999999999999999988888875 46777889999999999999999999987654
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.76 E-value=15 Score=33.02 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCh-------HHHHHHHHHHHhcC--C----CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 517 IWESILRASAIYGDV-------KLTENVAERMMDLQ--L----PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.+.-+.+.|...|+. ..|.+.|+++.+.. | +.......++.+..+.|++++|.+++.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 445556666666663 45556666666552 2 234566788899999999999999999998765
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.69 E-value=10 Score=28.40 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..-+++.++.+|.|...-..++..+...|++++|.+.+-.+....
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445666677788888888888888888888888888777777654
No 360
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.32 E-value=30 Score=26.41 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
.-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|..++
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 6789999999999999999999999999988877554444666554
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.42 E-value=2e+02 Score=35.57 Aligned_cols=128 Identities=14% Similarity=0.002 Sum_probs=70.4
Q ss_pred HHHHHHHhhhcCCChHHHHHHHhc-cCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhcc
Q 006580 182 LGNSLIDMYGKLGVLYYAFGVFLN-MEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPD-EYTISIVINACTKL 259 (640)
Q Consensus 182 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 259 (640)
.+..+...|..-++++...-+... ...++ ...-|-.....|+++.|...|+.+.+.+ |+ ..+++.++......
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcc
Confidence 344455577777777776666552 33332 2233445566788888888888887643 44 66777777777777
Q ss_pred CCchHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 006580 260 RNLDKGKQVFALSVKVGFLSNSIV-LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVM 318 (640)
Q Consensus 260 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 318 (640)
|.++.+.-..+...... .+.... ++.=+.+--+.++++....... ..+..+|.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 77776655443333221 111111 2222233345555555555444 3444445443
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.37 E-value=11 Score=33.12 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP----GCSIWESILR 523 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~ 523 (640)
|...-+..+.+.+.+.+|+...+.-.+. -+.+...-..+++.|+-.|++++|..-++-.. ..| ....|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566778889999999988876653 34456677788999999999999998877654 333 4556666665
Q ss_pred H
Q 006580 524 A 524 (640)
Q Consensus 524 ~ 524 (640)
.
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 363
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.23 E-value=1.5e+02 Score=33.84 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=8.6
Q ss_pred CCcchHHHHHHHHhccCC
Q 006580 244 PDEYTISIVINACTKLRN 261 (640)
Q Consensus 244 p~~~t~~~ll~~~~~~~~ 261 (640)
+|...-...+..+.+.+.
T Consensus 633 ~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP 650 (897)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 444444444555554443
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.51 E-value=6 Score=21.64 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 516 SIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
..|..+...+...++++.|...+++.++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567788889999999999999999988766
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.10 E-value=1.4e+02 Score=33.14 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCChhHHHHHhccCCCCCcchH-----HHHHH---HHHhCCChHHHHHHHHHHHH
Q 006580 84 WNICLRGLLKSDNLDTALKVFDEIPEPDVVSW-----NSMIS---GYASCGYSDYALEMFSKMQL 140 (640)
Q Consensus 84 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y-----~~li~---~~~~~~~~~~a~~~~~~m~~ 140 (640)
+..-+..+.+..++++|..+-+....|++... ..... -+..++++++|...|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 55556666666667777777666665544322 11111 24566778888888877754
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.02 E-value=13 Score=31.88 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=37.7
Q ss_pred CCCC-HHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 511 FQPG-CSIWESILRASAIYG-----------DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 511 ~~~~-~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+.|+ ..++..+..++..++ -+++|.+.|+++.+.+|.|......| ... ++|=++..++.+.
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHH
Confidence 4554 345555555554432 26778888888888999885544444 332 3477777788777
Q ss_pred CCccC
Q 006580 579 GINKV 583 (640)
Q Consensus 579 ~~~~~ 583 (640)
+..+.
T Consensus 137 ~~~~q 141 (186)
T PF06552_consen 137 GLGQQ 141 (186)
T ss_dssp SS---
T ss_pred Hhhhh
Confidence 65444
No 367
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=74.96 E-value=87 Score=30.61 Aligned_cols=189 Identities=10% Similarity=0.080 Sum_probs=109.5
Q ss_pred cCChHHHHHHHHhCCC---------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----cc
Q 006580 394 TGSIDSSTEIFVKLDK---------RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN----YG 460 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~ 460 (640)
.++.+.|.+-+-...+ .+...+..++..|...++|+.--+.+.-+.... --...+...+++-+. ..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkr-gqlk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKR-GQLKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCC
Confidence 5666666655544331 233456667777888888887666555554421 111122333333222 11
Q ss_pred CCHHHHHHHHHHhHHhh--CCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCCCC------C--HHHHHHHHHHHHH
Q 006580 461 GFVDKGMLVFSAMKEEY--GVMPG---EEHYACIIDLLCQAGQLGKAIDITSTMPFQP------G--CSIWESILRASAI 527 (640)
Q Consensus 461 ~~~~~A~~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~--~~~~~~l~~~~~~ 527 (640)
.+.+--+.+.+.++.-. .+-.. ...-..|...+...|++++|..++.+.+... . ....---++.|..
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22222222222222100 11110 1122345667888999999999999887111 1 1112223577888
Q ss_pred cCChHHHHHHHHHHHhcC--CCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 528 YGDVKLTENVAERMMDLQ--LPS-----PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~~--p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
.+|+-.|.-+-+++.... .++ ...|..++.+....+.|=.+-+.++...+.|..+.
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 899999999988887662 222 24688888888899999999999999988765444
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.24 E-value=35 Score=29.97 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=43.4
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 006580 228 ELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV---GFLSNSIVLSATIDLFSKCNRLEDSV 301 (640)
Q Consensus 228 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 301 (640)
+.|...|-.+...+.--++ ..-..+..|....+.+++.+++...++. +-.+|+.++.+|++.|.+.|+.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETA-ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5566666666555443333 3333333444466677777776666554 22567777777777777777777663
No 369
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.09 E-value=25 Score=32.95 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccCC-CCe-----eeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchH
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE-LDI-----ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTI 249 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~ 249 (640)
.+....+...++..-....+++++...+-.+.. ++. .+-.++++. +-.-++++++.++..=++-|+-||.+++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhhH
Confidence 444444555555555555666666666555542 211 112223333 3344566777777777777777888888
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhC
Q 006580 250 SIVINACTKLRNLDKGKQVFALSVKVG 276 (640)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (640)
..+|..+.+.+++..|.++.-.|+...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888887777777776666553
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.39 E-value=1.1e+02 Score=30.87 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHH
Q 006580 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE---LDIISWNSLISGCFNSGYGELALDQFY 235 (640)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 235 (640)
++..|.+-...+++. .|.++.........+...|+++.+...+..... ....+...+++...+.|+++.|..+-.
T Consensus 304 d~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 304 DIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred CHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 444444444444444 344444444444556677888888777766542 344566677777888888888888888
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC
Q 006580 236 SMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFL 278 (640)
Q Consensus 236 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 278 (640)
-|....+. |..............|-++++.-.|+++.....+
T Consensus 382 ~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 382 MMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 77765443 2333333333344556677777777777665433
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.26 E-value=9.4 Score=21.37 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 006580 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQA 558 (640)
Q Consensus 529 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 558 (640)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888899999998888888888776543
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.21 E-value=48 Score=27.43 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=30.6
Q ss_pred ChhhHHHHHHHHHhCCC-hHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCC
Q 006580 311 DYAVINVMISTYGRYGF-GEVALELFQLMLREDIRPTEFTLSCVLSSIPIP 360 (640)
Q Consensus 311 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~ 360 (640)
+-..|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.++.+|
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34456666666654444 334566666676666666777776677666553
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.08 E-value=1.4e+02 Score=32.14 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=30.8
Q ss_pred eeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 006580 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKL 259 (640)
Q Consensus 211 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 259 (640)
...--++|-.|.++|++++|.++.++... ........|...+..+...
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 33445667777888888888888866554 3455556677777777664
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.59 E-value=1.4e+02 Score=33.25 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcC
Q 006580 114 SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKL 193 (640)
Q Consensus 114 ~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 193 (640)
-|..|+..|...|..++|+++|.+.....-.-|.. .. +.-..+.+.+.+.+ +++..+.-... .+.-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-~~---------~~~e~ii~YL~~l~--~~~~~Li~~y~-~wvl~ 572 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-QL---------DGLEKIIEYLKKLG--AENLDLILEYA-DWVLN 572 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-hh---------hhHHHHHHHHHHhc--ccchhHHHHHh-hhhhc
Confidence 48899999999999999999999987631001110 00 00111222333332 11111111110 11122
Q ss_pred CChHHHHHHHhccCCCCeeeH-HHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 006580 194 GVLYYAFGVFLNMEELDIISW-NSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258 (640)
Q Consensus 194 g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 258 (640)
.+.+...++|-.-......+. ...+-.|+.....+-++.+++.+....-.++..-.+.++..|++
T Consensus 573 ~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 573 KNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344455555544111011111 12334567778888888999988876666666666667666653
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.55 E-value=84 Score=29.33 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=76.9
Q ss_pred cCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCChhhHHHHHHHHh--------ch
Q 006580 93 KSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF----SKMQLQGVRPSGFTFSILLSTVS--------SA 160 (640)
Q Consensus 93 ~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~--------~~ 160 (640)
+++++++|++++- .-...+.+.|+...|.++- +-..+.++.+|......++..+. ..
T Consensus 2 ~~kky~eAidLL~-----------~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLY-----------SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHH-----------HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 4566777776642 2233455666665554443 33344566667665555555554 12
Q ss_pred hHHHHHHHHHHHhC-CCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHH
Q 006580 161 CHGKQIHGSMIRSG-LSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRY 239 (640)
Q Consensus 161 ~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 239 (640)
.-.....++- +.| .-..++.....+...|.+.|++.+|+..|-.-..++...+-.++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------
Confidence 2233333333 222 12347888899999999999999998877554433333332233322223332222
Q ss_pred CCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 006580 240 SGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275 (640)
Q Consensus 240 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 275 (640)
|...-..+ --|...+++..|...+....+.
T Consensus 141 -----dlfi~RaV-L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 -----DLFIARAV-LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 11111222 2345567788888877766654
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.34 E-value=84 Score=31.32 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=33.2
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHH
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDRI--TLAAVLLACN--YGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~A~~~~~~~~~ 475 (640)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777788877777776 555444 3334444443 35567777777776655
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.94 E-value=36 Score=27.46 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 533 LTENVAERMMDLQ--LPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 533 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
.+.++|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8888898888774 47788899999999999999999999875
No 378
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.85 E-value=1.1e+02 Score=30.08 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---------CCCCCH
Q 006580 383 VASSLMEMYAKTGSIDSSTEIFVKLDK------RDLVSWNTIMMGLTQNGRAAETLDVFEELLEE---------GLPPDR 447 (640)
Q Consensus 383 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p~~ 447 (640)
.+.-+.+.|..+|+++.|++.+.+... .-+..|-.+|..-.-.|+|........+..+. -+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456678889999999999999998662 23446667777777778888877777766653 133444
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAM 473 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~ 473 (640)
.++..+...+.+ ++..|.+.|-..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 455555544443 677776665543
No 379
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.72 E-value=47 Score=25.27 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006580 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA 451 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 451 (640)
..+...|++++|..+.+.+..||...|-+|-. .+.|-.+.+..-+.+|...| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34566788888888888888888888876644 45666676777777777766 55555543
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.65 E-value=15 Score=26.38 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=23.0
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 006580 424 QNGRAAETLDVFEELLEEGLPPDR--ITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
...+.++|+..|+...+.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655553222221 2455555556665655555443
No 381
>PRK10941 hypothetical protein; Provisional
Probab=67.67 E-value=29 Score=32.42 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 487 ACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 487 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
+.+-.+|.+.++++.|++..+.+. ..| ++.-+.--...|.+.|.+..|..-++..++..|.++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345567788888888888888876 555 56667777777888888888888888888888866654
No 382
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=67.58 E-value=1.4e+02 Score=30.03 Aligned_cols=121 Identities=7% Similarity=0.023 Sum_probs=50.5
Q ss_pred chhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 006580 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258 (640)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 258 (640)
+..+...-+.++...+..+..-.+..-....|..+-..-+.+....|. ..|...+...... ++......+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHh
Confidence 333334444444444443222222222234444444555555555555 4455444442221 222222222222222
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006580 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309 (640)
Q Consensus 259 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 309 (640)
.|. +.+...+..+.+. ..+-...+.++.+.|+...+.-+.+.|..
T Consensus 236 ~~~-~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 236 AGG-PDAQAWLRELLQA-----AATRREALRAVGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred CCc-hhHHHHHHHHhcC-----hhhHHHHHHHHHHcCCcchHHHHHHHhcC
Confidence 222 2333333333322 12445556666666666655555555543
No 383
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.35 E-value=32 Score=25.96 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHcCChHHHHHHHHHHHhcCC----CC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 526 AIYGDVKLTENVAERMMDLQL----PS-----PLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.+.||+..|.+.+.+..+... .. ......++......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777766666665522 11 23344566777788888888888887765
No 384
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.28 E-value=26 Score=32.68 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=30.1
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
.+.|+.++|..+|+.++.+.|.++.+...++...-..++.-+|-..+-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 345666777777777777777666666666665555555555555543
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.88 E-value=15 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=14.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEE 441 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~ 441 (640)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666653
No 386
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.57 E-value=1.2e+02 Score=28.79 Aligned_cols=115 Identities=9% Similarity=-0.113 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 006580 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG-------QLGKAIDITSTMPFQPGCSIWESILRASAI----YGD 530 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 530 (640)
+..+|...+++..+. |..+.......+...|...+ +...|...+.++-..-+......+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666554 44333222333333333321 223566666665422244444444444422 348
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCC
Q 006580 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG---------------RWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 531 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~ 580 (640)
.++|...|+++.+.+. ......+. .+...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 8899999999988876 45555555 555555 66777777777776664
No 387
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.28 E-value=70 Score=26.01 Aligned_cols=72 Identities=6% Similarity=-0.012 Sum_probs=47.7
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 480 MPGEEHYACIIDLLCQAGQ---LGKAIDITSTMP--FQP--GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 480 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
.++..+--.+..++.++.+ ..+.+.++++.. -.| .....-.|.-++.+.++++.+.++++.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4555555556666666554 345555666554 223 23345566678889999999999999999999887543
No 388
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.85 E-value=2e+02 Score=31.04 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=29.5
Q ss_pred cCChHHHHHHHHHHHhc---CCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHHHH
Q 006580 528 YGDVKLTENVAERMMDL---QLPS-PLPYS-----LLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~---~p~~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
.|+..+........... .|+. ...|. .+...|-..|+.++|........
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 57777766665555544 2222 23332 44455777899999988877654
No 389
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.32 E-value=1.1e+02 Score=27.76 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=55.3
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHHhhCC-CCChh---HHHHHHHHHHhcCChHHHHHHHHhCC-CC--CCHHHHH---HH
Q 006580 453 VLLACNYG-GFVDKGMLVFSAMKEEYGV-MPGEE---HYACIIDLLCQAGQLGKAIDITSTMP-FQ--PGCSIWE---SI 521 (640)
Q Consensus 453 ll~~~~~~-~~~~~A~~~~~~~~~~~~~-~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~---~l 521 (640)
+...|... .++++|+..|+..-+-+.. ..+.. .+-.....-...+++.+|+++|++.. .. .+..-|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33344333 5666777776665442211 11222 23333344467788999999998875 11 1211221 12
Q ss_pred HH--HH-HHcCChHHHHHHHHHHHhcCCC--ChhHHHHHH
Q 006580 522 LR--AS-AIYGDVKLTENVAERMMDLQLP--SPLPYSLLT 556 (640)
Q Consensus 522 ~~--~~-~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 556 (640)
+. .| ....|.-.+...+++-.+++|. +..-+..|-
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 21 22 2236777888889999999993 333344443
No 390
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.89 E-value=1.5e+02 Score=29.30 Aligned_cols=56 Identities=11% Similarity=-0.065 Sum_probs=29.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhH
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC-NYGGFVDKGMLVFSAMK 474 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~A~~~~~~~~ 474 (640)
|..+.+.|-+..|+++.+-+.+....-|+.....+|+.| .++++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 445566666666666666666643222344444444443 35556665555555543
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.85 E-value=38 Score=25.00 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHH
Q 006580 34 AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL 101 (640)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 101 (640)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.++++.++ ..+..|...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777763 222223333222235577777777777777 66777777777777766655443
No 392
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.14 E-value=1.7e+02 Score=29.70 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=27.7
Q ss_pred hHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 006580 114 SWNSMISGYAS---CGYSDYALEMFSKMQLQGVRPSGFTFSIL 153 (640)
Q Consensus 114 ~y~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 153 (640)
.+..++.++.+ .++.+.|+.++..|.+.|..|....-..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34444554444 57899999999999999988864443333
No 393
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.08 E-value=36 Score=32.33 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=68.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP----FQP--GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 562 (640)
=.+-|.+.+++..|...|.+-. -.| +...|+.=..+-...|++..|+.-..+++..+|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 3455777888888888887754 233 3445665555666678999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 006580 563 GRWEAIVRVKKVMR 576 (640)
Q Consensus 563 g~~~~a~~~~~~m~ 576 (640)
.++++|..+.++..
T Consensus 167 e~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHhhhh
Confidence 99888887776553
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.07 E-value=66 Score=24.88 Aligned_cols=79 Identities=6% Similarity=0.003 Sum_probs=43.3
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 006580 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340 (640)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 340 (640)
..++|..+.+.+...+- ....+--.-+..+.+.|+++.|+..=.....||...|-+|.. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45566666666655543 233333344456667777887744444444567777766543 466777777777776665
Q ss_pred CC
Q 006580 341 ED 342 (640)
Q Consensus 341 ~~ 342 (640)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.80 E-value=27 Score=30.74 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
..|++.++..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467777777777777777777777777777777777
No 396
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=62.91 E-value=2.3e+02 Score=30.87 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHH---ccCCchHHHHHHhcCCC--CChhhHHHHH
Q 006580 14 SLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYS---RFGTSDDVLQLFDEIPQ--KNCISWNICL 88 (640)
Q Consensus 14 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~--~~~~~~~~ll 88 (640)
+-..+..|+..+.+.|+++...+.-..|..-- +.++..|-..+.-.. ..+...++..+|+.... .++..|.-.+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 44455667777777777776666666665543 455555555544332 33555666666666543 3333444333
Q ss_pred HHHh-------cCCChhHHHHHhccCC
Q 006580 89 RGLL-------KSDNLDTALKVFDEIP 108 (640)
Q Consensus 89 ~~~~-------~~~~~~~A~~~~~~~~ 108 (640)
..+. +.++++....+|....
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral 217 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERAL 217 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHH
Confidence 3322 2344555555555443
No 397
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=62.20 E-value=82 Score=25.36 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 500 GKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL--PSPLPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
+++.+.|.... .+.|+.....-+...-..++ ..++|..|...+. .-+..|...+..+-..|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444 45565543333322222233 5677888877744 667788889999999999999999886
No 398
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.13 E-value=1.9e+02 Score=30.03 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH------------HHHHHHHHHhccCCHHHHHHHHHH
Q 006580 425 NGRAAETLDVFEELLEEGLPPDRI------------TLAAVLLACNYGGFVDKGMLVFSA 472 (640)
Q Consensus 425 ~g~~~~a~~~~~~m~~~g~~p~~~------------~~~~ll~~~~~~~~~~~A~~~~~~ 472 (640)
...+++|...|.-.... ..|+.+ +...+...|-.+|+.+.|..++++
T Consensus 251 s~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR 309 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIER 309 (665)
T ss_pred chHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34455666666555543 233221 233333445555666665555554
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.64 E-value=1.3e+02 Score=28.49 Aligned_cols=85 Identities=9% Similarity=0.223 Sum_probs=57.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----------cCChHH
Q 006580 432 LDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ----------AGQLGK 501 (640)
Q Consensus 432 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 501 (640)
.++|+.|...++.|.-.+|..+.-.+++.=.+...+.+|+.+... +.-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 468888888889998888887777777877888888888887753 2225555555443 366777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 006580 502 AIDITSTMPFQPGCSIWESILR 523 (640)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~l~~ 523 (640)
-+++++..+ ..|....-.+..
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVAD 357 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHH
Confidence 777776654 334444433333
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.51 E-value=1.2e+02 Score=30.56 Aligned_cols=208 Identities=10% Similarity=0.047 Sum_probs=104.2
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcC
Q 006580 220 GCFNSGYGELALDQFYSMRYSGYSPDEYT--ISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI--VLSATIDLFSKCN 295 (640)
Q Consensus 220 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 295 (640)
..+..|+.+- ++.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..|+.. ....-+...++.|
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3455677654 444455677776542 344555666677765 445556677655432 1233456667889
Q ss_pred CHHHHHHHHHhcCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChh---hHHHHHhhCCCCChHHHHHH
Q 006580 296 RLEDSVRLFEQLDRWD----YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF---TLSCVLSSIPIPPVEHGSQF 368 (640)
Q Consensus 296 ~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~~l~~~~~~~~~~a~~~ 368 (640)
+.+.+..+++.-...+ ..-.+.| ...+..|+. ++++.+.+.|..|+.. ..+.+..++..|+.+....+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9888877776543211 1112233 233445554 4555556667665432 23344444434665544433
Q ss_pred HHHHHHhCCCCchHH--HHHHHHHHHhcCChHHHHHHHHhCCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006580 369 HSMAIKSGFDSNAVV--ASSLMEMYAKTGSIDSSTEIFVKLDKRDLV---SWNTIMMGLTQNGRAAETLDVFEELLEEGL 443 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 443 (640)
.+.|..++... -.+.+...+..|+.+-+.-+++.-..++.. ...+++...+..|+.+ +.+.+.+.|.
T Consensus 155 ----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 155 ----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred ----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 34443332111 112333445567766666666554433221 1123333334455543 4455566676
Q ss_pred CCCHH
Q 006580 444 PPDRI 448 (640)
Q Consensus 444 ~p~~~ 448 (640)
.++..
T Consensus 227 d~n~~ 231 (413)
T PHA02875 227 DCNIM 231 (413)
T ss_pred CcchH
Confidence 66643
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.26 E-value=75 Score=24.59 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=39.9
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhcc
Q 006580 27 SFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDE 106 (640)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 106 (640)
.....++|..+.+.+...+- ....+--..+..+.+.|+|++|...=.....||..+|-.|-. .+.|--+++...|.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 44566777777777776663 223333333444556677777744444444466666655443 245555555555544
Q ss_pred CC
Q 006580 107 IP 108 (640)
Q Consensus 107 ~~ 108 (640)
+.
T Consensus 95 la 96 (116)
T PF09477_consen 95 LA 96 (116)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 402
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.22 E-value=1.4e+02 Score=27.80 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=20.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHCCCCCCcch
Q 006580 217 LISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248 (640)
Q Consensus 217 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 248 (640)
+.+...+.+++++|+..+.+....|+..|..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 44455666677777777777776666655544
No 403
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.77 E-value=1.2e+02 Score=26.66 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDKRDLVS--WNTIMMGLTQNGRAAETLDVFEELLEEG 442 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g 442 (640)
|.......|.+++|...++....++-.. ...-...+...|+-++|..-|++....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5556667777777777777776553322 2333456777777777777777777754
No 404
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.70 E-value=97 Score=25.69 Aligned_cols=48 Identities=10% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 006580 448 ITLAAVLLACNYGGF-VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 496 (640)
..|..++.+.++..- .--+..+|.-+.+. +.+++...|..++.++.+.
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~-~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKN-DIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcC
Confidence 345555555544433 22344445555443 5555555555555554443
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.24 E-value=40 Score=29.72 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=19.4
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 478 GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 478 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
...|++..|..++.++...|+.++|.+...++.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445666666666666666666666665555554
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.13 E-value=68 Score=23.74 Aligned_cols=65 Identities=9% Similarity=0.051 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHH
Q 006580 266 KQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332 (640)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (640)
.+++..+.+.|+- +......+-..-...|+.+.|.+++..++ +.+..|...+.++-..|+-+-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555532 22222222222224577888888888888 77778888888877777655443
No 407
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.35 E-value=69 Score=24.99 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+.+..++.+++ ..-|..|+..|...|..++|++++.++.+.
T Consensus 28 ~~~~~e~~L~~--------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 28 DLEEVEEVLKE--------HGKYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred CHHHHHHHHHH--------cCCHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 55566665543 456888999999999999999999888774
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.00 E-value=25 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 006580 21 LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDL 59 (640)
Q Consensus 21 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 59 (640)
+|-...+.|-.+++..+++.|.+.|+..++..|..++..
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344455688889999999999999999999888887764
No 409
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.28 E-value=2.2e+02 Score=29.07 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=35.9
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHccCCchHHHHHHhcCCC
Q 006580 12 KASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLG-FNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ 78 (640)
Q Consensus 12 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 78 (640)
.-|...+..-+..|-+.+.+.....++..|+..+ ..|+.+++.+. .-|.....++.|+.+|..-.+
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLR 168 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhh
Confidence 3366666666666666666667777777766654 22333333222 222333336666666666544
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.05 E-value=1.3e+02 Score=28.13 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH--
Q 006580 418 IMMGLTQNGRAAETLDVFEELLE--EGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL-- 493 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-- 493 (640)
=|++++..+++.+++...-+--+ ..++|...- ..|-.|++.+....+.++-..-... .-.-+...|.++++.|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHH
Confidence 36777888888887765443333 224444333 3344477888888777777666654 2222333477666555
Q ss_pred ---HhcCChHHHHHHHHhCC
Q 006580 494 ---CQAGQLGKAIDITSTMP 510 (640)
Q Consensus 494 ---~~~g~~~~A~~~~~~~~ 510 (640)
.-.|.+++|+++...-.
T Consensus 166 ~VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHHhccccHHHHHHHHhcCC
Confidence 44688999988885433
No 411
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.01 E-value=69 Score=25.60 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 006580 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACII 490 (640)
Q Consensus 430 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 490 (640)
+..+-+.....-.+.|++......+++|-+.+++..|.++|+-++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34445556666678888888888899999999999999999888764 333333455444
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.36 E-value=18 Score=38.93 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006580 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERM 541 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 541 (640)
..+|+++.|++.-.+.. |..+|..|+.....+|+.+-|+-.|++.
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 34555555555554432 4455666666555566655555555553
No 413
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.11 E-value=1.5e+02 Score=26.89 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=10.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCC
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
++.++.+.|+...|+.++....
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC
Confidence 3444444455555555555443
No 414
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.16 E-value=2.4e+02 Score=28.84 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 006580 487 ACIIDLLCQAGQLGKAIDITSTMP-F-QPGCSIWESILRASAI--YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562 (640)
Q Consensus 487 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 562 (640)
+.+++-+.+.|-..+|...+.... . +|+...+..+++.-.. .-+...+..+|+.+....-.++..|......=...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 445566667777777777776665 2 3366666666554322 22466677777777766446666666665555566
Q ss_pred CChHHHHHHHHHHHh
Q 006580 563 GRWEAIVRVKKVMRK 577 (640)
Q Consensus 563 g~~~~a~~~~~~m~~ 577 (640)
|..+.+-.++.+..+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 776666665555443
No 415
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.45 E-value=1.8e+02 Score=30.59 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=65.6
Q ss_pred HHhcCChHHHHHHHHhCC--CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 493 LCQAGQLGKAIDITSTMP--FQPG------CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
..+..++..+.+.|..-. +..| ......+.-.|....++|.|.++++++-+.+|.++..-..+..+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 456677777777776533 2222 23455566667777899999999999999999998888888888899999
Q ss_pred hHHHHHHHHHHHhCC
Q 006580 565 WEAIVRVKKVMRKNG 579 (640)
Q Consensus 565 ~~~a~~~~~~m~~~~ 579 (640)
-++|+..+......-
T Consensus 444 Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 444 SEEALTCLQKIKSSE 458 (872)
T ss_pred hHHHHHHHHHHHhhh
Confidence 999999888776543
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.43 E-value=71 Score=24.05 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 006580 521 ILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
+.......|++++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444455566777777777766665
No 417
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.95 E-value=2e+02 Score=29.74 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CChhH---HHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDK--RDLVS---WNTIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
..++.-|.+.+++++|..++..|.= -.... .+.+...+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3467778888888888888888871 12222 33334444444334444444444444
No 418
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.66 E-value=85 Score=25.92 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 006580 500 GKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565 (640)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 565 (640)
+.|.++.+-|. .....-.........|++..|.++.+.++..+|+|...-...+++|.+.|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555555553 3333444455667889999999999999999999999888888888776643
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.59 E-value=28 Score=31.08 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=46.6
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 581 (640)
..+.+|.+.+.+++.+++++-|.....|..++..--++|+++.|.+.+++..+.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345678888888888888888888888888888888888888888888888776543
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.48 E-value=24 Score=33.12 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006580 110 PDVV-SWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSI 152 (640)
Q Consensus 110 ~~~~-~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 152 (640)
+|.. -||..|..-.+.||+++|+.++++.++.|+.--..||..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4443 467999999999999999999999999998766666643
No 421
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=1.7e+02 Score=26.61 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=73.4
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHHhcCC
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDRIT-LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH-YACIIDLLCQAGQ 498 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~ 498 (640)
.|....+++.|+..|.+.+. +.|+..+ |+.-+..+.+..+++.+..--.... .+.|+... ...+...+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhcc
Confidence 35556678999998888877 6788754 4455666677778887776655544 45666543 3344556667778
Q ss_pred hHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 006580 499 LGKAIDITSTMP-------FQPGCSIWESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 499 ~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
+++|+..+.+.. +.+...++..|..+--..=...+..++.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888777662 445566666666554433344455555444
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.21 E-value=49 Score=30.95 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=27.4
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 006580 458 NYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP 513 (640)
Q Consensus 458 ~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 513 (640)
-+.|+.++|..+|+.... +.|+ +.....+.......+++-+|-..+-++. +.|
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 456667777777766553 2332 3333333333334455555666655554 444
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.87 E-value=2.1e+02 Score=27.37 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHH
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDR---ITLAAVLLACNYGGFVDKGMLVFS 471 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~ 471 (640)
|..+-.+.|+..+|.+.++.+.+. .|-. .....|+.+|....-+.....++-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445667777777777776653 2211 123345566655544444444443
No 424
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.63 E-value=14 Score=36.76 Aligned_cols=61 Identities=3% Similarity=-0.052 Sum_probs=52.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 523 RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
......++++.|..++.++++++|+.+..|..-+.++.+.+++..|+.=..++.+......
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 3445678899999999999999999999999998999999999999998888877664333
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.59 E-value=79 Score=27.30 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=11.8
Q ss_pred HHHHhcCCChhHHHHHhccCC
Q 006580 88 LRGLLKSDNLDTALKVFDEIP 108 (640)
Q Consensus 88 l~~~~~~~~~~~A~~~~~~~~ 108 (640)
+..|.+.|.+++|.++|++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 344556666666666665543
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.56 E-value=1e+02 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777778777777766
No 427
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.64 E-value=2.1e+02 Score=27.01 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
++.....|...|.+.+|.++.++.+... +.+...+-.++..+...|+--.+.+.++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444567778888888888888887742 44556677777888888887777666665543
No 428
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.74 E-value=68 Score=33.09 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=70.7
Q ss_pred HhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 006580 494 CQAGQLGKAIDITSTMP-FQP--GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
...|+...|.+-+..+. ..| .....-.|.+...+.|-.-.|-.++.+.+.+....|-++..++.+|....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34688899998887765 455 233455677777888888889999999999988888999999999999999999999
Q ss_pred HHHHHHhCCC
Q 006580 571 VKKVMRKNGI 580 (640)
Q Consensus 571 ~~~~m~~~~~ 580 (640)
.++...+...
T Consensus 698 ~~~~a~~~~~ 707 (886)
T KOG4507|consen 698 AFRQALKLTT 707 (886)
T ss_pred HHHHHHhcCC
Confidence 9988876543
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.46 E-value=36 Score=23.26 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
|..-...++.++...|++++|.++++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344455556666666666666555544
No 430
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.17 E-value=72 Score=29.57 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 519 ESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 519 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.+-+++.+.++++.|....++.+.++|.++.-...-+-+|.+.|.+.-|++-++...+.-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 4555678888999999999999999999999888888899999999999999988876654
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.96 E-value=95 Score=24.85 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
.-|++.+...-+.+|.+-+|+..|.++++-+...-++.-..|-.+
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 678899999999999999999999999988877655433344433
No 432
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.77 E-value=77 Score=22.96 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=30.4
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHH---HHHHHHhcCChHHHHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSL---LTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~a~~~~ 572 (640)
...+.+.|+..++++++..++.+.-|.. |+.+|+.-|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888876655554444 445666677777766643
No 433
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.70 E-value=35 Score=25.11 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChh
Q 006580 35 KTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLD 98 (640)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 98 (640)
..+++.+.+.|+ .+....-...+..-+.+.+.++++.++..+...|..+..++-..|...
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 345555555552 122222223334445566666666666666666666666665555443
No 434
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.25 E-value=4.5e+02 Score=30.24 Aligned_cols=79 Identities=8% Similarity=-0.034 Sum_probs=35.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRA 524 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~ 524 (640)
|..+++.+-..+-.+.+.++-....+ .++++ ..+++++.+-....|.+.+|.+.+-.-+ .......+..|+..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 44444555555555555555444444 22222 2234455555555555555555544422 11112234444444
Q ss_pred HHHcCC
Q 006580 525 SAIYGD 530 (640)
Q Consensus 525 ~~~~~~ 530 (640)
+...|.
T Consensus 1064 Lfecg~ 1069 (1480)
T KOG4521|consen 1064 LFECGE 1069 (1480)
T ss_pred HHhccc
Confidence 444443
No 435
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.52 E-value=54 Score=19.44 Aligned_cols=16 Identities=6% Similarity=-0.193 Sum_probs=6.5
Q ss_pred HHHHHHcCChHHHHHH
Q 006580 522 LRASAIYGDVKLTENV 537 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~ 537 (640)
...+-..|++++|..+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3333444444444444
No 436
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.31 E-value=1.5e+02 Score=27.66 Aligned_cols=85 Identities=9% Similarity=0.014 Sum_probs=42.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHHC--CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 006580 218 ISGCFNSGYGELALDQFYSMRYS--GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK-- 293 (640)
Q Consensus 218 i~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 293 (640)
|++++..+++.+++...-+.-+. .++|.. ...-|-.|.+.+....+.++-..-+...-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56777777777776655544332 223322 222333455666666666665555543211122235554444433
Q ss_pred ---cCCHHHHHHHH
Q 006580 294 ---CNRLEDSVRLF 304 (640)
Q Consensus 294 ---~g~~~~A~~~~ 304 (640)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666655
No 437
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=49.30 E-value=2.6e+02 Score=27.15 Aligned_cols=118 Identities=10% Similarity=-0.006 Sum_probs=75.1
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh---cCChHHHHHHHHH
Q 006580 500 GKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM---RGRWEAIVRVKKV 574 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 574 (640)
+.-+.+++++. ..| +...+..++..+.+.-+.+...+.+++++..+|.++..|...+..... .-.+++...+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 34455566654 344 667788888888888899999999999999999999999888766654 2357788887776
Q ss_pred HHhCCCccCCceeeEEecCEEEEEecCCCCCCC-hHHHHHHHHHHHHHHHHcCccC
Q 006580 575 MRKNGINKVTGCSWIGIKNRIYTFNAGELQHHG-GQKIYLVLRLLTWEMEDEGCVY 629 (640)
Q Consensus 575 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~p 629 (640)
....-.....+. ......-+. ...+...+.++...++++||..
T Consensus 128 ~l~~L~~~~~~~------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 128 CLRALSRRRSGR------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHhhccc------------cccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence 654321111110 000111122 2233445566777788888753
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.92 E-value=68 Score=20.53 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=25.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006580 121 GYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLS 155 (640)
Q Consensus 121 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 155 (640)
...+.|-..++..++++|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567777788888888888887777666665554
No 439
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.04 E-value=72 Score=23.51 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=47.1
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHH
Q 006580 70 LQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYA 131 (640)
Q Consensus 70 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a 131 (640)
..+++.+.+.++.+....-..-....+.+.|.++++.++..+..+|..+..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34556666666666665555556677789999999999999999999999999888765544
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.83 E-value=2.5e+02 Score=26.72 Aligned_cols=77 Identities=6% Similarity=0.047 Sum_probs=51.0
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------cCCHHHH
Q 006580 231 LDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK----------CNRLEDS 300 (640)
Q Consensus 231 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 300 (640)
.++++.|...++.|.-++|..+.-.+.+.=.+..+..+|+.+... ..-+..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777888888888888888877788888888888888877653 2225555555543 3555555
Q ss_pred HHHHHhcCCCCh
Q 006580 301 VRLFEQLDRWDY 312 (640)
Q Consensus 301 ~~~~~~~~~~~~ 312 (640)
.++++.-+.-|+
T Consensus 338 mkLLQ~yp~tdi 349 (370)
T KOG4567|consen 338 MKLLQNYPTTDI 349 (370)
T ss_pred HHHHhcCCCCCH
Confidence 555555444333
No 441
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.95 E-value=53 Score=23.84 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=30.5
Q ss_pred HcCChHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 527 IYGDVKLTENVAERMMDL-----QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
..|+.+.|..+|++.+.. ..|.+ .....-.|++|.++.++|.+.
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~--------~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP--------SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC--------cccccHHHHHHHHHHHHHHHH
Confidence 347888888888887765 12222 345667899999999998753
No 442
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.79 E-value=1.2e+02 Score=22.66 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChH-HHHHHHHHH
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQL--PSPLPYSLLTQAYAMRGRWE-AIVRVKKVM 575 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 575 (640)
|....-.+...+...|+++.|++.+-.+++.++ .+...-..|+.++...|.-+ -+.++.++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 667777788888888888888888888888866 44667777777877777743 444444443
No 443
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=46.74 E-value=24 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHcCccCCCc
Q 006580 609 QKIYLVLRLLTWEMEDEGCVYLEC 632 (640)
Q Consensus 609 ~~~~~~~~~l~~~~~~~g~~p~~~ 632 (640)
.++...+++..++++.+|+.||-.
T Consensus 8 i~il~~ie~~inELk~dG~ePDiv 31 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIV 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEE
Confidence 356777888899999999999943
No 444
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.56 E-value=4.1e+02 Score=28.68 Aligned_cols=49 Identities=14% Similarity=-0.014 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPG-------EEHYACIIDLLCQAGQLGKAIDITS 507 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 507 (640)
-.+++..|...++.+.+...-.|+ +..+....-.+...|+++.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467898999999988765332232 2222222333456799999999997
No 445
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.41 E-value=2.6e+02 Score=26.38 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=77.6
Q ss_pred ChHHHHHHHhccCC-----CCeeeHHHHHHHHHhcC--ChhHHHHHHHHhHH-CCCCCCcchHHHHHHHHhccCCchHHH
Q 006580 195 VLYYAFGVFLNMEE-----LDIISWNSLISGCFNSG--YGELALDQFYSMRY-SGYSPDEYTISIVINACTKLRNLDKGK 266 (640)
Q Consensus 195 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~ 266 (640)
.+.+|+++|+.... .|..+-..+++...... ....-.++.+-+.. .|-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34567777764332 23344445555554411 22223344444433 246788888899999999999999999
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 267 QVFALSVKV-GFLSNSIVLSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 267 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
+++...... +...|...|..++....+.|+..-...+.++-
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 999887766 66778899999999999999998888887763
No 446
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.27 E-value=2.8e+02 Score=26.72 Aligned_cols=109 Identities=11% Similarity=-0.050 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006580 463 VDKGMLVFSAMKEEYGV---MPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAE 539 (640)
Q Consensus 463 ~~~A~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 539 (640)
.+.|.+.|+.......- ..++.....++....+.|..+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45778888887763111 345666667777777788766655555555556678888889999988999999999999
Q ss_pred HHHhcC-CCChhHHHHHHHHHHhcCCh--HHHHHHH
Q 006580 540 RMMDLQ-LPSPLPYSLLTQAYAMRGRW--EAIVRVK 572 (640)
Q Consensus 540 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~a~~~~ 572 (640)
.++..+ .++...+..+. .+...+.. +.+.+++
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHH
Confidence 998854 33444444443 33323333 4455444
No 447
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.59 E-value=2.1e+02 Score=25.81 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPP-----DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 489 (640)
+|.|+--|.-+..+.+|-+.| +.+.|+.| +...-..-+......|+.+.|++....+... -+.-|.+.+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Q ss_pred HHH----HHhcCChHHHHHHHHh
Q 006580 490 IDL----LCQAGQLGKAIDITST 508 (640)
Q Consensus 490 ~~~----~~~~g~~~~A~~~~~~ 508 (640)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.46 E-value=38 Score=23.17 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
|..-.-.+|.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445577888888888888888887765
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.31 E-value=45 Score=31.35 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 454 (640)
-|+..|..-.+.||+++|+.++++.++.|+.--..+|..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888889999999999999999988766666665443
No 450
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.46 E-value=3.4e+02 Score=26.94 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPGEE----HYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
..|+...-..++......-.+..|.. ..+.|++.|...+.++.|.++..+..
T Consensus 181 ~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~ 236 (493)
T KOG2581|consen 181 LEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV 236 (493)
T ss_pred hhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc
Confidence 34444444444444333223333322 34444555555566666666666655
No 451
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.39 E-value=33 Score=27.73 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 006580 221 CFNSGYGELALDQFYSMRYSGYSPDEYTISIVINAC 256 (640)
Q Consensus 221 ~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 256 (640)
....|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999998885 66666543
No 452
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.62 E-value=47 Score=29.76 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=26.4
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 495 QAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
+.++.+.|.+++..+. ..| ....|--+...--+.|+.+.|.+.|++.++++|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444444444444443 222 34445555544455555555555555555555533
No 453
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.92 E-value=3.3e+02 Score=26.37 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh---cCChHHHHH
Q 006580 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ---AGQLGKAID 504 (640)
Q Consensus 428 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~ 504 (640)
.+.-+.++++.++.+ +-+......++..+.+..+.+...+-++++... .+-+...|...++.... .-.++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 455667888888762 334456667777788888888888888888764 23356667766665443 224555555
Q ss_pred HHHhC
Q 006580 505 ITSTM 509 (640)
Q Consensus 505 ~~~~~ 509 (640)
+|.+.
T Consensus 124 ~y~~~ 128 (321)
T PF08424_consen 124 VYEKC 128 (321)
T ss_pred HHHHH
Confidence 55444
No 454
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.23 E-value=2.5e+02 Score=24.66 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=14.5
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006580 559 YAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~ 577 (640)
..+.|+++.|.++++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3467888888888888765
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.86 E-value=1.9e+02 Score=25.16 Aligned_cols=19 Identities=16% Similarity=0.287 Sum_probs=9.6
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 006580 492 LLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~ 510 (640)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3445555555555555543
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.16 E-value=2.7e+02 Score=25.50 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=16.0
Q ss_pred HHHHHhCCChHHHHHHHHHHhhCCCCCChhhH
Q 006580 319 ISTYGRYGFGEVALELFQLMLREDIRPTEFTL 350 (640)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 350 (640)
+...-+.++++++...++++...+...+..--
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eER 39 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEER 39 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHH
Confidence 44455556666666666666655444444333
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.95 E-value=1.7e+02 Score=30.36 Aligned_cols=110 Identities=13% Similarity=0.214 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--Chh---hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCC
Q 006580 284 LSATIDLFSKCNRLEDSVRLFEQLDRW--DYA---VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP 358 (640)
Q Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~ 358 (640)
...++.-|.+.+++++|..++..|.-. ... +.+.+++.+.+..-.++....++.+...-..|....-.....
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~--- 487 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL--- 487 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH---
Confidence 346778899999999999999998642 222 344555666666555555666665554333232111101011
Q ss_pred CCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCh
Q 006580 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDL 412 (640)
Q Consensus 359 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 412 (640)
++-+.+. ..-..+...+.+.+++++|+.+--++..+|.
T Consensus 488 --------ey~d~V~--------~~aRRfFhhLLR~~rfekAFlLAvdi~~~DL 525 (545)
T PF11768_consen 488 --------EYRDPVS--------DLARRFFHHLLRYQRFEKAFLLAVDIGDRDL 525 (545)
T ss_pred --------HHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHhccchHH
Confidence 1111110 1112345556677888888888777766554
No 458
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.89 E-value=1.1e+03 Score=31.54 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCC-HHH-----------HHHHHHhcCCCChh
Q 006580 249 ISIVINACTKLRNLDKGKQVFALSVKVGFLS---NSIVLSATIDLFSKCNR-LED-----------SVRLFEQLDRWDYA 313 (640)
Q Consensus 249 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~-~~~-----------A~~~~~~~~~~~~~ 313 (640)
+..++.+..+..+|......+....+.-.++ ...+|..+...+.+..+ ..+ +++-+++.+..-..
T Consensus 2554 ~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~ 2633 (3550)
T KOG0889|consen 2554 YELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNH 2633 (3550)
T ss_pred ceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccch
Confidence 3344555556666666666665554443222 33444444444333222 222 22333333333333
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhC
Q 006580 314 VINVMISTYGRYGFGEVALELFQLMLRE 341 (640)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 341 (640)
....++.++..--...+|..++..+.+.
T Consensus 2634 ~h~~lL~~~QqivEl~Ea~~I~s~l~~~ 2661 (3550)
T KOG0889|consen 2634 GHVPLLQAFQQIVELQEAAQIYSDLNDG 2661 (3550)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455666666666667777777666543
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.78 E-value=1.9e+02 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 549 PLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
..+|..++-+|.-.++|.+|.+.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 460
>PF14044 NETI: NETI protein
Probab=38.53 E-value=30 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCccCC
Q 006580 616 RLLTWEMEDEGCVYL 630 (640)
Q Consensus 616 ~~l~~~~~~~g~~p~ 630 (640)
.+.++.|++.||.|-
T Consensus 11 ~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 11 SDCLARMKKEGYMPV 25 (57)
T ss_pred HHHHHHHHHcCCCce
Confidence 447899999999984
No 461
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.39 E-value=3.6e+02 Score=25.66 Aligned_cols=198 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006580 230 ALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR 309 (640)
Q Consensus 230 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 309 (640)
|.++|+...... ..+.++.++.+.+--+.-.++| +|+..+.......+...|--+
T Consensus 186 ~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~e----------- 240 (412)
T KOG2297|consen 186 AVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKE----------- 240 (412)
T ss_pred HHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHH-----------
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 006580 310 WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLM 388 (640)
Q Consensus 310 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 388 (640)
+.-|.+......+.+-++. .+..-... ..+++......+-.+..--|++.+...+-
T Consensus 241 ---------lvey~~~q~~~~a~kElq~--------------~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivW 297 (412)
T KOG2297|consen 241 ---------LVEYHRNQQSEGARKELQK--------------ELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVW 297 (412)
T ss_pred ---------HHHHHHHHHHHHHHHHHHH--------------HHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeH
Q ss_pred HHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH---------------HHHHHHHHCCCCCCHHHHHHH
Q 006580 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETL---------------DVFEELLEEGLPPDRITLAAV 453 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~---------------~~~~~m~~~g~~p~~~~~~~l 453 (640)
+.......|.+-.++..+-.-+....|..|+.+++..|+.+..+ +.|.+....-.+.+..+=..+
T Consensus 298 s~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~I 377 (412)
T KOG2297|consen 298 SGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETI 377 (412)
T ss_pred hhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 006580 454 LLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 454 l~~~~~~~~~~~A~~~~~~~~~ 475 (640)
+.-|-.......-.-+++.|..
T Consensus 378 L~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 378 LKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHhccccccHHHHHHHHHH
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.77 E-value=3.8e+02 Score=25.79 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHh---hCCCCChhHHHHHHHHH-----HhcCChHHHHHHHHhCC---CCCCHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEE---YGVMPGEEHYACIIDLL-----CQAGQLGKAIDITSTMP---FQPGCSI 517 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~---~~~~~~~ 517 (640)
.......-||+.|+.+.|.+.+.+..++ .|.+-|...+..-+..+ .-...+++|..++++-. -+.-..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 4555566678888888887777665443 13344443332222111 11234556666666544 1112334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 518 WESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 518 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
|..+. |...+++.+|-.+|-..+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 44332 23345677777777666555
No 463
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.75 E-value=78 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.230 Sum_probs=16.5
Q ss_pred CCchHHHHHHhcCCCCChhhHHHHHHHHhcC
Q 006580 64 GTSDDVLQLFDEIPQKNCISWNICLRGLLKS 94 (640)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 94 (640)
-+.+.+.++++.++..++..|..+..++-..
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRET 78 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhc
Confidence 3445555555555555555555555555433
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.10 E-value=2.2e+02 Score=22.93 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhc
Q 006580 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLN 205 (640)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 205 (640)
....+.++|..|...|....-...|..-...+...|++++|.++|+.
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44567777777777775555667777777777778888888877753
No 465
>PRK09857 putative transposase; Provisional
Probab=36.18 E-value=2.4e+02 Score=26.88 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 518 WESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 518 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
+..++......++.++-.++++.+.+..|.......+++.-+.+.|.-+++.++.++|...|+...
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445667777777787777777666666677888888888888889999999999987543
No 466
>PHA03100 ankyrin repeat protein; Provisional
Probab=36.02 E-value=5.1e+02 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=6.1
Q ss_pred HccCCchHHHHHHhc
Q 006580 61 SRFGTSDDVLQLFDE 75 (640)
Q Consensus 61 ~~~~~~~~a~~~~~~ 75 (640)
++.|+.+-+..+++.
T Consensus 43 ~~~~~~~ivk~Ll~~ 57 (480)
T PHA03100 43 KEARNIDVVKILLDN 57 (480)
T ss_pred hccCCHHHHHHHHHc
Confidence 333444444444433
No 467
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=35.91 E-value=6.8e+02 Score=28.20 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006580 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444 (640)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 444 (640)
|..+-..|.+.. ++|++++++.|..-.-.+.++...+.|.. -.....+.-.+.|.++..---.
T Consensus 1166 a~klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~kw~d~ 1228 (1304)
T KOG1114|consen 1166 AVKLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELLKWLDA 1228 (1304)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHHHHhhc
Confidence 444455554433 67888887776532222333322222211 0012233444555555542112
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 006580 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499 (640)
Q Consensus 445 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 499 (640)
-|..++..-.......|++-.|.+++.++.+..+-.++...|..+++.+...|--
T Consensus 1229 ~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1229 SDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred CCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 3444444445555667888888888888888767788888888777777766643
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.83 E-value=2e+02 Score=23.89 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 006580 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCN 295 (640)
Q Consensus 232 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 295 (640)
++.+.+++.|++++..-.. ++..+.+.++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~~-vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLA-VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 469
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.50 E-value=8 Score=36.57 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=54.3
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceee
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSW 588 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 588 (640)
...|.++.|++.+-.+++++|+....|..-+.++.+.+++..|++=+....+.+.+...++-|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 456889999999999999999999999999999999999999999888888776655555433
No 470
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.47 E-value=7.4e+02 Score=28.46 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhccC--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHH----
Q 006580 448 ITLAAVLLACNYGG--FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWES---- 520 (640)
Q Consensus 448 ~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~---- 520 (640)
.-+..++.+|.+.+ ++++|+.....+++. +...|.+.++.+. ..+-...|+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae~alkyl~fLvDvn~Ly~~ALG~ 871 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAEEALKYLCFLVDVNKLYDVALGT 871 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHHHHHhHheeeccHHHHHHHHhhh
Confidence 34557778888877 888898888888753 2233333333333 1111222332
Q ss_pred ------HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 521 ------ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 521 ------l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
++-|-..++|+.+=+-.++++.++.|.. .-| .+=...|+|++|++.+.+
T Consensus 872 YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~-rry----~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 872 YDLELALMVAQQSQKDPKEYLPFLQELQKLPPLY-RRY----KIDDHLKRYEKALRHLSA 926 (928)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHHHHhCChhh-eee----eHhhhhCCHHHHHHHHHh
Confidence 2333344567777777777766664422 111 122457889999887764
No 471
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.47 E-value=1.6e+02 Score=22.04 Aligned_cols=58 Identities=9% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCh
Q 006580 71 QLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYS 128 (640)
Q Consensus 71 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~ 128 (640)
.+++.+.+.++.+-...-.......+.+.+.++++.++..++.+|..+..++-..+..
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3455555555555554444445556789999999999999999999999999765543
No 472
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=35.34 E-value=1.9e+02 Score=21.51 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHH
Q 006580 34 AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTAL 101 (640)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 101 (640)
+..+++.+.+.|+ .+. .-.=..-.+..+.+.|..+++.++.++...|....+++-..|...-|.
T Consensus 16 v~~ild~L~~~gv-lt~---~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 16 TSYIMDHMISDGV-LTL---DEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHHHHhcCC-CCH---HHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHH
Confidence 3456666666662 111 122222334556667777777777777777777777666555554444
No 473
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.10 E-value=3.1e+02 Score=24.06 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=23.7
Q ss_pred HHhcCChHHHHHHHHhCCC------CChhHHHHHHH-HHHhCCC--hHHHHHHHHHHHH
Q 006580 391 YAKTGSIDSSTEIFVKLDK------RDLVSWNTIMM-GLTQNGR--AAETLDVFEELLE 440 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~ 440 (640)
....|++++|..-++++.+ .-...|..+.. +++.++. +-+|.-++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3445666666665555541 12233444443 4444443 4455555544444
No 474
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.77 E-value=3e+02 Score=25.87 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHhHHhhC--------CCCChhHHHHHHHHH-HhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006580 469 VFSAMKEEYG--------VMPGEEHYACIIDLL-CQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVA 538 (640)
Q Consensus 469 ~~~~~~~~~~--------~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 538 (640)
+++.+.++ + ++.|...++.|+.-- .+...++++++-.++-. -.-....|..+...|++-+|.+.+.+..
T Consensus 60 lYkyL~E~-~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~ 138 (412)
T COG5187 60 LYKYLAEK-GNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWM 138 (412)
T ss_pred HHHHHHhc-cCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHhc------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 539 ERMMDL------QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 539 ~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.+..+. ..+-..+-..|+..|....-.++-++..+.|.++|
T Consensus 139 ~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 139 RRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 475
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.65 E-value=5.7e+02 Score=26.89 Aligned_cols=155 Identities=11% Similarity=0.041 Sum_probs=80.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhh--CCCCChhHHHHHHHHHHh
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN-YGGFVDKGMLVFSAMKEEY--GVMPGEEHYACIIDLLCQ 495 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~ 495 (640)
|+.+.+.|-+.-|.+..+-+.+....-|+.....+|+.|+ +..++.-.+++++...... ..-|+-..-.+|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4556677888888888887777543335666666776654 5667777777777664321 223444333344444544
Q ss_pred cCC---hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHhcCC----hH
Q 006580 496 AGQ---LGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL--QLPSPLPYSLLTQAYAMRGR----WE 566 (640)
Q Consensus 496 ~g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~----~~ 566 (640)
... -..|...+.++. +--+..+..|+..+.-..+ |...--++..- ..+....+..+..+|+.... .-
T Consensus 429 ~~~~~~rqsa~~~l~qAl-~~~P~vl~eLld~~~l~~d---a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~P 504 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL-KHHPLVLSELLDELLLGDD---ALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKLP 504 (665)
T ss_pred cCChhhHHHHHHHHHHHH-HhCcHHHHHHHHhccCCch---hhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcCh
Confidence 443 344555555544 3333444555554433221 11111111111 11334567777777776542 23
Q ss_pred HHHHHHHHHHh
Q 006580 567 AIVRVKKVMRK 577 (640)
Q Consensus 567 ~a~~~~~~m~~ 577 (640)
++..+++....
T Consensus 505 ~~ls~l~~~~~ 515 (665)
T KOG2422|consen 505 DVLSFLESAYH 515 (665)
T ss_pred HHHHHHHHHHH
Confidence 44445544443
No 476
>PRK12798 chemotaxis protein; Reviewed
Probab=34.45 E-value=4.9e+02 Score=26.11 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=121.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHH--HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCC
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGL--TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA-CNYGGF 462 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~ 462 (640)
+.+-....-|+++-...++..-..++.. +.++.+. .-.|+..++.+.|..+...-.++....|..|+.+ .....+
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 3444445567777777777666544332 2233322 2368999999999999887777777888888866 455678
Q ss_pred HHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHHhcCChHHHHHH----HHhCCCCCCHH-HHHHHHHHHHHcCChHH
Q 006580 463 VDKGMLVFSAMKEEYGVMPGEE----HYACIIDLLCQAGQLGKAIDI----TSTMPFQPGCS-IWESILRASAIYGDVKL 533 (640)
Q Consensus 463 ~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 533 (640)
...|+.+|+..+- ..|..- ....-+-.....|+.+++..+ +.+....|-.. .+..+..+..+..+-..
T Consensus 164 P~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~ 240 (421)
T PRK12798 164 PATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR 240 (421)
T ss_pred HHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc
Confidence 9999999998763 345432 233334556788888876655 44444455433 33445555555554443
Q ss_pred HHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 534 TENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 534 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
-..+.+-+-..+| .-...|..++..-.-.|+.+-|.-.-++.....
T Consensus 241 ~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 241 DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 3343333334466 345688889999999999999988888877654
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.33 E-value=1.9e+02 Score=26.75 Aligned_cols=53 Identities=11% Similarity=-0.055 Sum_probs=25.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 520 SILRASAIYGDVKLTENVAERMMDLQL------PSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
.+...|...|++++|.++++.+..... ....+...+..++.+.|+.++...+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344445555555555555555533311 12233344555555666666555543
No 478
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.22 E-value=3.4e+02 Score=31.48 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHHhCCChHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH---Hh-hCCC--CChhHHHH
Q 006580 421 GLTQNGRAAETLD------VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMK---EE-YGVM--PGEEHYAC 488 (640)
Q Consensus 421 ~~~~~g~~~~a~~------~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~-~~~~--p~~~~~~~ 488 (640)
.....|.+.+|.+ ++......--++....|..+...+-+.|+.++|+..-.... ++ .|.. -+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566666665 55532222123344578888888889999999988654422 11 0221 12345666
Q ss_pred HHHHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CC---CChh
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP---------FQPG-CSIWESILRASAIYGDVKLTENVAERMMDL-----QL---PSPL 550 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p---~~~~ 550 (640)
+.-....+++...|...+.+.. ..|. ..+...+-..+...++++.|.++.+.+.+. .| .+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 6666667777777777665543 2343 334444544455557889999999988876 32 5566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 006580 551 PYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
.|..++..+...|++..|....+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 788888888888888877765543
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.09 E-value=3.1e+02 Score=29.13 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC------CChhHHHHHHHHHHhCCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDK------RDLVSWNTIMMGLTQNGRAA------ETLDVFEELLEEGLPPDRITLAAV 453 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 453 (640)
+|.++|...|++..+.++++.... .-...+|..|....++|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 566666667777666666666541 12345666666666666543 1222222222 44456666666
Q ss_pred HHHHh
Q 006580 454 LLACN 458 (640)
Q Consensus 454 l~~~~ 458 (640)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 55443
No 480
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.94 E-value=4.9e+02 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=16.9
Q ss_pred HHHhCCChHHHHHHHHHHhhCCCCCCh
Q 006580 321 TYGRYGFGEVALELFQLMLREDIRPTE 347 (640)
Q Consensus 321 ~~~~~~~~~~a~~~~~~m~~~~~~p~~ 347 (640)
.+.+.+++..|.++|..+.+. +.++.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~ 165 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGRE 165 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchh
Confidence 344667777788877777765 44433
No 481
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=33.69 E-value=4.6e+02 Score=25.54 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=48.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE-TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD 464 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 464 (640)
-+.+.+++.++.+.+..+-+.+..-......++..++-...=.+. +..+++.+... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 356667777766666666555554333344445444433332222 33344444433 77777778888877766655
Q ss_pred HHHHHHHHhHHh
Q 006580 465 KGMLVFSAMKEE 476 (640)
Q Consensus 465 ~A~~~~~~~~~~ 476 (640)
.....+..+...
T Consensus 248 ~~~~~i~~~L~~ 259 (340)
T PF12069_consen 248 LVAILIDALLQS 259 (340)
T ss_pred HHHHHHHHHhcC
Confidence 555545555543
No 482
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.35 E-value=5.8e+02 Score=29.44 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=25.2
Q ss_pred hHHHHHHHhhhcCCChHHHHHHHhccCC--CCeeeHHHHHHHHHhcCChh
Q 006580 181 VLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDIISWNSLISGCFNSGYGE 228 (640)
Q Consensus 181 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~ 228 (640)
.+++.+-+.....|.+-+|...+-..+. +-..+..-++..++..|.++
T Consensus 1022 ~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1022 LISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 3455566666666666666665544331 12233445555555555543
No 483
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.16 E-value=6.3e+02 Score=26.98 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCC
Q 006580 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDRWD-YAVINVMISTYGRYGFGEVALELFQLMLREDIR 344 (640)
Q Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 344 (640)
...+..|+..+... +.+.-.++++++.. . ...|..++.+....|-.....-+.+.+....+.
T Consensus 310 ~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 310 AAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 33444454444332 34444555555443 2 456667777777777655555555544444443
No 484
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.57 E-value=6.4e+02 Score=26.90 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=18.6
Q ss_pred ChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 006580 346 TEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFV 405 (640)
Q Consensus 346 ~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 405 (640)
+......++..|.. |-.+.+..+.+.+-..-+. ..-|..-+..+.++|+......+-+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444 5555555444433332211 1223444555566666555444433
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.39 E-value=97 Score=21.50 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006580 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459 (640)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 459 (640)
|....++.++...++..-.++++..+.++...|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666666777777777777663 444555555544444
No 486
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.22 E-value=4.6e+02 Score=25.15 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 488 CIIDLLCQAGQLGKAIDITSTMP-FQPG---CSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 488 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
.|..+-.+.|+..+|.+.++.+. ..|- ..+...|+.+|....-+.....++-+.-++
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444456677777777766654 2221 123345666665555555555555444444
No 487
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.85 E-value=6.5e+02 Score=26.75 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=88.2
Q ss_pred ChHHHHHHHHhCCC-CChhHHHHHHHHHH----hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 006580 396 SIDSSTEIFVKLDK-RDLVSWNTIMMGLT----QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470 (640)
Q Consensus 396 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 470 (640)
+...|.++|....+ -.+..+-.+..+|. ...+...|..++.+.-+.| .|...--...+..+.. +.++.+...+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 45666666666552 23333322222222 2235777777777777776 3332222233333333 5566555555
Q ss_pred HHhHHhhCCCCChhHHHHHHHHH-----Hh--cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLL-----CQ--AGQLGKAIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENVAE 539 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~-----~~--~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 539 (640)
..+... +.......-..+.... .+ ..+.+.+..++......-+......|...|.. ..+++.|...+.
T Consensus 421 ~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 421 LYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred HHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 554443 3222111111111111 00 12445555555555434444555555444432 236788888888
Q ss_pred HHHhcCCCChhHHHHHHHHHHhc-C--ChHHHHHHHHHHHhCC
Q 006580 540 RMMDLQLPSPLPYSLLTQAYAMR-G--RWEAIVRVKKVMRKNG 579 (640)
Q Consensus 540 ~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~~ 579 (640)
++.+.. .....+++..+-.. | .+..|.+++....+.+
T Consensus 500 ~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 500 RASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 877776 55555666655432 1 1577777777766544
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.77 E-value=4.1e+02 Score=24.37 Aligned_cols=162 Identities=12% Similarity=0.106 Sum_probs=81.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY-GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 496 (640)
++...-+.|+++++...++++...+...+..-.+.+..+|-. .|....+++++..+..+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667788888888888888887666666555555555532 34455566666665544222212 2222222222211
Q ss_pred ------CChHHHHHHHHhCC----CCCCHHHH-HHH-HHHH---HHc--C-----ChHHHHHHHHHHHhc-----CCCCh
Q 006580 497 ------GQLGKAIDITSTMP----FQPGCSIW-ESI-LRAS---AIY--G-----DVKLTENVAERMMDL-----QLPSP 549 (640)
Q Consensus 497 ------g~~~~A~~~~~~~~----~~~~~~~~-~~l-~~~~---~~~--~-----~~~~a~~~~~~~~~~-----~p~~~ 549 (640)
.--.+.+.+++... ..+...+| .-+ +..| +.. | -.+.|.+.|+++.+. .|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 01134555555544 11111111 111 1111 111 1 236777788877755 44444
Q ss_pred hHHH---HHH-HHHHhcCChHHHHHHHHHHHhCCC
Q 006580 550 LPYS---LLT-QAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 550 ~~~~---~l~-~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
.-.. +.. ..|-..|+.++|.++.+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3222 122 233457999999999988877654
No 489
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.55 E-value=2.8e+02 Score=22.38 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHH
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIW-ESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
.+..++..++.=.|..++|.++++.....++...+ ..++..|....+-++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455556666666666666666666533333322 2455666665555555544433
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.55 E-value=1.8e+02 Score=26.84 Aligned_cols=19 Identities=16% Similarity=-0.046 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 006580 218 ISGCFNSGYGELALDQFYS 236 (640)
Q Consensus 218 i~~~~~~~~~~~A~~~~~~ 236 (640)
++.|...|++..|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3455555555555554443
No 491
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.07 E-value=5.7e+02 Score=25.87 Aligned_cols=105 Identities=11% Similarity=-0.052 Sum_probs=55.5
Q ss_pred hHHHHHHHHhHH---CCC-CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 006580 228 ELALDQFYSMRY---SGY-SPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRL 303 (640)
Q Consensus 228 ~~A~~~~~~m~~---~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (640)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+.. ...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~----------------~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLE----------------LLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHH----------------HHHHH
Confidence 444445544432 133 44444454454433 688888888777765432111211 11222
Q ss_pred HHhc---CCCChhhHHHHHHHHHh---CCChHHHHHHHHHHhhCCCCCChhhH
Q 006580 304 FEQL---DRWDYAVINVMISTYGR---YGFGEVALELFQLMLREDIRPTEFTL 350 (640)
Q Consensus 304 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~ 350 (640)
+... ..++...+..+++++.+ .++.+.|+..+..|.+.|..|....-
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~r 268 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIAR 268 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2211 11222234444555544 57899999999999999887765443
No 492
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.04 E-value=7.9e+02 Score=27.46 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=93.0
Q ss_pred HhcCChHHHHHHHHhCC--------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH---HHH--HHHh
Q 006580 392 AKTGSIDSSTEIFVKLD--------KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLA---AVL--LACN 458 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~ll--~~~~ 458 (640)
...|+++.|.++-+... ...+..+..+..+..-.|++++|..+..+..+..-.-+...|. .+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34577777776665544 2355667777788888889998888877666532222333222 221 2345
Q ss_pred ccCCH--HHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC----C-CCCCH--H--HHHHHH
Q 006580 459 YGGFV--DKGMLVFSAMKEEYGVMPG-----EEHYACIIDLLCQAGQLGKAIDITSTM----P-FQPGC--S--IWESIL 522 (640)
Q Consensus 459 ~~~~~--~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~~--~--~~~~l~ 522 (640)
..|.. .+....+......+..... ..++..+..++.+ ++.+..-.... . ..|.. . .+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 56633 3333334433332111111 1233333444443 33332222111 1 22322 2 223566
Q ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCChhHHHH---H--HHHHHhcCChHHHHHHHHH
Q 006580 523 RASAIYGDVKLTENVAERMMDL--QLPSPLPYSL---L--TQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~---l--~~~~~~~g~~~~a~~~~~~ 574 (640)
......|++++|...+.++..+ ++.....|.. . ......+|+.+++.....+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 6777889999999998888877 2221222221 1 1223457888888877764
No 493
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.96 E-value=4.2e+02 Score=24.22 Aligned_cols=147 Identities=11% Similarity=0.094 Sum_probs=84.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDK 465 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 465 (640)
.-++.|.+.-++.-|...+.++.+|=..-+ .+--|.+..+.+---.+.+-....+++-+..-+..++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQSRC--AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQSRC--AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHhhh--HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 346667777777777777766665522211 1222344444333334444444455655555444444 456788888
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006580 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545 (640)
Q Consensus 466 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 545 (640)
|+..++.-..-+|... +..+|+-. ..|.+.....++..|.. +++++|.+.+.++.+++
T Consensus 211 alNnLQst~~g~g~Vn--------------------~enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVN--------------------QENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHHHhccccccc--------------------hhhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcC
Confidence 8888877655333211 12222222 37788877777777754 68888999988888886
Q ss_pred CCChhHHHHHHHH
Q 006580 546 LPSPLPYSLLTQA 558 (640)
Q Consensus 546 p~~~~~~~~l~~~ 558 (640)
-.......++..+
T Consensus 269 ysp~Dii~~~FRv 281 (333)
T KOG0991|consen 269 YSPEDIITTLFRV 281 (333)
T ss_pred CCHHHHHHHHHHH
Confidence 5444444444433
No 494
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=30.66 E-value=1.4e+02 Score=22.19 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChH
Q 006580 69 VLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129 (640)
Q Consensus 69 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~ 129 (640)
+..+++.+.+.++.+-.-.=..-.+..+.+.|..+++.++.++..+|..+..++-..|..+
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 3445555555555555544444456667888888888888888888888888877655444
No 495
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.59 E-value=2.2e+02 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhCC
Q 006580 17 YCSQLIDRCLSFKSFDFAKTIHGHLFKLGF 46 (640)
Q Consensus 17 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 46 (640)
.+..++-.+...|+++.|.++.+.+++.|.
T Consensus 85 Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 85 VLMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 366677778888999999999999999883
No 496
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.37 E-value=1.1e+02 Score=28.85 Aligned_cols=76 Identities=8% Similarity=0.099 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 480 MPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWES-ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 480 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
..|+..|...+.-..+.|-+.+.-.++.++. ..| |+..|-. -..-+..+++++.+..++.+.+..+|.+|..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3344444444444445555566666666554 334 5665543 22344567899999999999999999998877643
No 497
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.03 E-value=4.4e+02 Score=23.94 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006580 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASA 526 (640)
Q Consensus 453 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 526 (640)
++.++...|+.+.|..+++...- ...+......++.. ..++.+.+|..+-+.....-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44444445566666665554321 11111222222222 444566666665555441111334444444444
No 498
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.03 E-value=1.8e+02 Score=29.25 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 505 ITSTMPFQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 505 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
+|......|. .-++...+..+.+.+++.-|-.+.+++++++|+.
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444444553 2356777778889999999999999999998865
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.91 E-value=2.6e+02 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=7.9
Q ss_pred HhccCCHHHHHHHHHH
Q 006580 457 CNYGGFVDKGMLVFSA 472 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~ 472 (640)
|++.|+.+.|.+-|+.
T Consensus 82 ys~~G~~e~a~~eFet 97 (121)
T COG4259 82 YSNSGKDEQAVREFET 97 (121)
T ss_pred HhhcCChHHHHHHHHH
Confidence 4455555555554443
No 500
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.90 E-value=4.2e+02 Score=30.81 Aligned_cols=122 Identities=10% Similarity=0.014 Sum_probs=84.7
Q ss_pred HHhccCCHHHHHH------HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-CHHHHH
Q 006580 456 ACNYGGFVDKGML------VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP---------FQP-GCSIWE 519 (640)
Q Consensus 456 ~~~~~~~~~~A~~------~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~ 519 (640)
.+...|.+.+|.+ ++...... -.++....|..|...+.+.|+.++|+..-.+.. ..| +...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444566666666 55433221 224456678889999999999999998876653 223 344566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 520 SILRASAIYGDVKLTENVAERMMDL--------QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
.+.-.+...++...|...+.++.++ .|+....+..+..++...++++-|.++++.+.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666666777888888888888776 3444555667777777779999999999988773
Done!