Query 006580
Match_columns 640
No_of_seqs 620 out of 4131
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 03:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-40 4.1E-45 355.3 37.8 478 60-579 63-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.5E-39 1.5E-43 343.2 43.2 475 13-561 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.4E-31 230.9 41.6 371 119-564 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 9.2E-28 3.2E-32 244.3 23.3 183 313-496 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-25 9.2E-30 223.0 38.9 352 218-579 6-369 (388)
6 4g26_A Pentatricopeptide repea 99.9 2.2E-27 7.7E-32 241.5 18.3 211 228-460 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.5E-23 1.5E-27 215.2 32.8 215 360-579 251-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.2E-21 7.6E-26 198.6 35.7 320 213-574 28-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.4E-22 2.2E-26 206.5 32.2 261 259-555 202-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.9E-21 6.5E-26 204.1 30.9 422 112-579 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.8E-21 1.3E-25 196.9 30.8 352 176-568 22-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.7E-26 205.2 27.6 428 82-554 26-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 6E-18 2.1E-22 167.2 36.4 299 254-579 11-336 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 3.8E-16 1.3E-20 168.2 49.3 500 18-570 842-1376(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 6.5E-18 2.2E-22 167.0 33.3 309 213-563 5-354 (359)
16 3hym_B Cell division cycle pro 99.8 1.2E-17 4.2E-22 162.9 32.1 285 245-566 21-322 (330)
17 3hym_B Cell division cycle pro 99.8 2.4E-17 8.1E-22 160.9 27.2 263 278-578 19-299 (330)
18 2ooe_A Cleavage stimulation fa 99.8 4.9E-16 1.7E-20 162.0 38.8 401 168-579 3-493 (530)
19 1xi4_A Clathrin heavy chain; a 99.8 4E-14 1.4E-18 152.8 53.4 416 49-508 984-1441(1630)
20 3mkr_A Coatomer subunit epsilo 99.8 7.8E-17 2.7E-21 153.1 26.0 245 285-572 38-288 (291)
21 2xm6_A Protein corresponding t 99.8 2.8E-15 9.7E-20 154.6 39.9 364 179-561 38-452 (490)
22 1b89_A Protein (clathrin heavy 99.8 2.4E-16 8.3E-21 152.5 26.5 222 62-341 15-236 (449)
23 1fch_A Peroxisomal targeting s 99.8 6.3E-17 2.2E-21 160.6 23.2 255 314-574 66-355 (368)
24 1b89_A Protein (clathrin heavy 99.8 5.3E-17 1.8E-21 157.0 21.2 287 192-509 15-308 (449)
25 2xm6_A Protein corresponding t 99.7 2.3E-14 7.9E-19 147.8 40.2 353 208-581 36-435 (490)
26 4eqf_A PEX5-related protein; a 99.7 1.8E-16 6.2E-21 157.1 21.6 270 246-574 65-352 (365)
27 4eqf_A PEX5-related protein; a 99.7 2.9E-16 9.9E-21 155.6 22.6 232 311-579 64-311 (365)
28 3mkr_A Coatomer subunit epsilo 99.7 2.3E-15 7.9E-20 142.9 27.5 244 289-579 7-265 (291)
29 2ooe_A Cleavage stimulation fa 99.7 1E-14 3.4E-19 152.1 34.9 396 111-547 12-495 (530)
30 4g1t_A Interferon-induced prot 99.7 2.2E-15 7.6E-20 155.0 29.3 363 213-589 53-470 (472)
31 1fch_A Peroxisomal targeting s 99.7 4.8E-16 1.6E-20 154.2 23.2 298 223-544 37-359 (368)
32 3cv0_A Peroxisome targeting si 99.7 6.1E-16 2.1E-20 150.6 22.3 151 422-575 148-312 (327)
33 4g1t_A Interferon-induced prot 99.7 4.2E-14 1.4E-18 145.4 28.9 390 111-556 50-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 4.3E-14 1.5E-18 137.5 27.4 228 211-475 21-268 (327)
35 2pl2_A Hypothetical conserved 99.7 7.6E-15 2.6E-19 133.1 19.6 194 378-576 2-212 (217)
36 3spa_A Mtrpol, DNA-directed RN 99.6 2.1E-16 7.2E-21 165.1 9.9 128 377-505 123-258 (1134)
37 3spa_A Mtrpol, DNA-directed RN 99.6 1E-16 3.5E-21 167.3 5.7 125 176-300 123-255 (1134)
38 3uq3_A Heat shock protein STI1 99.6 6.1E-14 2.1E-18 131.1 21.5 220 313-579 6-237 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 2.5E-13 8.4E-18 137.8 26.1 375 118-578 9-421 (452)
40 3uq3_A Heat shock protein STI1 99.6 1.4E-13 4.8E-18 128.7 19.8 237 281-558 5-256 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-13 4.9E-18 130.1 19.3 185 380-572 76-269 (275)
42 2ho1_A Type 4 fimbrial biogene 99.6 5.1E-13 1.8E-17 124.4 22.8 197 381-579 37-239 (252)
43 2vq2_A PILW, putative fimbrial 99.6 6.8E-13 2.3E-17 121.0 23.1 200 378-579 5-212 (225)
44 3u4t_A TPR repeat-containing p 99.5 4.3E-13 1.5E-17 126.6 20.9 242 286-563 8-269 (272)
45 2q7f_A YRRB protein; TPR, prot 99.5 2E-13 6.9E-18 126.3 18.2 197 380-579 22-223 (243)
46 1ouv_A Conserved hypothetical 99.5 7.6E-12 2.6E-16 118.0 27.8 224 311-580 5-253 (273)
47 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-12 5E-17 114.7 21.1 165 411-579 4-171 (184)
48 2q7f_A YRRB protein; TPR, prot 99.5 4.9E-13 1.7E-17 123.7 18.5 213 312-562 23-240 (243)
49 2ho1_A Type 4 fimbrial biogene 99.5 3.3E-12 1.1E-16 118.9 24.2 206 312-554 37-248 (252)
50 2vq2_A PILW, putative fimbrial 99.5 6.6E-12 2.3E-16 114.4 24.3 207 312-555 8-222 (225)
51 3u4t_A TPR repeat-containing p 99.5 2.8E-12 9.5E-17 121.0 21.9 228 314-579 5-251 (272)
52 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-11 4.1E-16 125.4 27.9 340 216-581 8-390 (452)
53 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4E-17 128.5 19.6 229 312-579 97-349 (382)
54 2h6f_A Protein farnesyltransfe 99.5 3.7E-12 1.3E-16 125.0 21.3 241 283-562 99-366 (382)
55 2pl2_A Hypothetical conserved 99.5 3.7E-12 1.3E-16 115.3 18.9 192 278-508 2-210 (217)
56 4abn_A Tetratricopeptide repea 99.4 1.4E-12 4.9E-17 133.1 17.3 192 378-573 99-316 (474)
57 1ouv_A Conserved hypothetical 99.4 3.5E-11 1.2E-15 113.4 25.7 228 280-551 5-258 (273)
58 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.9E-12 1E-16 121.0 17.9 215 360-579 19-245 (275)
59 3sf4_A G-protein-signaling mod 99.4 4E-12 1.4E-16 127.6 19.8 93 247-339 10-114 (406)
60 3sf4_A G-protein-signaling mod 99.4 2.6E-12 8.8E-17 129.0 18.2 303 212-566 10-364 (406)
61 4a1s_A PINS, partner of inscut 99.4 2E-12 6.7E-17 130.2 15.1 266 283-578 50-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.4 9.3E-10 3.2E-14 115.3 34.4 214 331-549 328-575 (679)
63 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-11 6.7E-16 107.4 18.6 168 379-549 3-175 (184)
64 3ro2_A PINS homolog, G-protein 99.4 5.6E-12 1.9E-16 122.8 16.4 267 283-579 7-333 (338)
65 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.4E-14 113.6 34.8 216 364-581 327-573 (679)
66 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.4E-16 131.8 18.2 163 411-577 8-173 (723)
67 3as5_A MAMA; tetratricopeptide 99.4 3.6E-11 1.2E-15 105.6 18.2 163 414-579 10-174 (186)
68 4a1s_A PINS, partner of inscut 99.4 2.9E-11 9.9E-16 121.6 19.7 234 283-546 88-374 (411)
69 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.7E-15 112.1 22.6 213 363-580 33-272 (308)
70 3ro2_A PINS homolog, G-protein 99.3 3.5E-11 1.2E-15 117.1 19.2 234 283-546 45-334 (338)
71 4i17_A Hypothetical protein; T 99.3 5.9E-11 2E-15 108.4 18.9 189 380-579 6-210 (228)
72 3ulq_A Response regulator aspa 99.3 6.7E-11 2.3E-15 117.7 20.6 230 318-578 109-368 (383)
73 3ulq_A Response regulator aspa 99.3 1.2E-10 4E-15 115.9 21.5 230 287-544 109-368 (383)
74 3nf1_A KLC 1, kinesin light ch 99.3 3.6E-11 1.2E-15 115.7 16.9 219 360-578 41-307 (311)
75 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.6E-15 119.2 19.9 178 397-579 84-288 (474)
76 4i17_A Hypothetical protein; T 99.3 5E-10 1.7E-14 102.2 20.7 203 346-560 6-225 (228)
77 3as5_A MAMA; tetratricopeptide 99.3 3.7E-10 1.3E-14 99.1 19.1 167 382-551 9-180 (186)
78 2ond_A Cleavage stimulation fa 99.3 2.1E-09 7.3E-14 103.0 25.3 167 380-549 98-275 (308)
79 3q15_A PSP28, response regulat 99.2 1.7E-09 5.7E-14 107.2 23.8 229 318-577 107-364 (378)
80 1hz4_A MALT regulatory protein 99.2 1E-08 3.4E-13 101.4 28.3 264 285-578 18-322 (373)
81 3nf1_A KLC 1, kinesin light ch 99.2 4.6E-11 1.6E-15 114.9 10.3 241 280-547 26-310 (311)
82 3qky_A Outer membrane assembly 99.2 1.8E-09 6.2E-14 100.8 19.9 203 381-624 15-247 (261)
83 3q15_A PSP28, response regulat 99.2 4.5E-09 1.5E-13 104.1 22.6 230 286-544 106-365 (378)
84 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.4E-14 104.8 16.0 219 360-578 15-281 (283)
85 2fo7_A Synthetic consensus TPR 99.1 2.8E-09 9.5E-14 87.7 15.7 128 450-579 4-133 (136)
86 4gyw_A UDP-N-acetylglucosamine 99.1 1.4E-09 4.7E-14 115.5 15.9 165 378-546 6-176 (723)
87 1qqe_A Vesicular transport pro 99.1 1.1E-08 3.7E-13 97.1 20.6 172 383-556 79-281 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.1E-08 3.6E-13 93.0 18.9 180 382-581 5-216 (225)
89 4ga2_A E3 SUMO-protein ligase 99.1 3.4E-10 1.2E-14 95.3 8.1 140 421-564 6-149 (150)
90 1hz4_A MALT regulatory protein 99.0 7.1E-08 2.4E-12 95.3 25.7 121 220-340 23-163 (373)
91 3qky_A Outer membrane assembly 99.0 8.9E-09 3E-13 96.0 17.6 196 350-567 19-250 (261)
92 1qqe_A Vesicular transport pro 99.0 3.9E-09 1.3E-13 100.2 15.1 199 362-575 33-266 (292)
93 3qou_A Protein YBBN; thioredox 99.0 1.3E-08 4.3E-13 96.3 17.9 174 399-577 104-283 (287)
94 3mv2_B Coatomer subunit epsilo 99.0 4.9E-08 1.7E-12 90.6 21.0 179 367-553 87-291 (310)
95 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.3E-13 83.7 15.7 131 414-547 3-135 (136)
96 2pzi_A Probable serine/threoni 99.0 9.7E-09 3.3E-13 109.6 18.4 169 392-564 402-583 (681)
97 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.4E-14 91.2 9.0 124 453-579 3-130 (150)
98 3mv2_B Coatomer subunit epsilo 99.0 3.8E-08 1.3E-12 91.3 18.7 176 400-580 85-284 (310)
99 3edt_B KLC 2, kinesin light ch 99.0 3.2E-09 1.1E-13 100.2 11.6 223 322-544 11-281 (283)
100 3rjv_A Putative SEL1 repeat pr 98.9 8.5E-08 2.9E-12 85.9 19.8 162 410-580 16-199 (212)
101 2vsy_A XCC0866; transferase, g 98.9 1.8E-08 6.2E-13 105.7 17.2 160 394-556 2-169 (568)
102 2r5s_A Uncharacterized protein 98.9 9.4E-09 3.2E-13 89.3 12.3 156 417-577 11-172 (176)
103 3gyz_A Chaperone protein IPGC; 98.9 1.2E-08 4.1E-13 85.3 11.6 97 483-579 36-134 (151)
104 2vgx_A Chaperone SYCD; alterna 98.9 7.7E-09 2.6E-13 86.6 10.1 98 482-579 20-119 (148)
105 2vsy_A XCC0866; transferase, g 98.9 1E-07 3.5E-12 99.9 20.2 152 425-580 2-159 (568)
106 4gco_A Protein STI-1; structur 98.9 3.5E-08 1.2E-12 79.9 12.9 107 449-557 15-123 (126)
107 2pzi_A Probable serine/threoni 98.8 1.3E-08 4.5E-13 108.6 12.4 153 423-579 402-564 (681)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.6E-08 3.3E-12 85.8 16.3 128 415-548 9-154 (213)
109 3urz_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 84.9 16.2 156 388-548 11-190 (208)
110 4gco_A Protein STI-1; structur 98.8 4.6E-08 1.6E-12 79.2 12.4 101 479-579 8-111 (126)
111 3u3w_A Transcriptional activat 98.8 9.4E-07 3.2E-11 83.7 23.3 161 417-577 80-265 (293)
112 2xcb_A PCRH, regulatory protei 98.8 7.4E-08 2.5E-12 80.0 13.2 97 483-579 18-116 (142)
113 3urz_A Uncharacterized protein 98.8 1.4E-07 4.8E-12 84.3 15.8 161 414-579 6-187 (208)
114 2qfc_A PLCR protein; TPR, HTH, 98.8 3.8E-07 1.3E-11 86.5 19.0 164 414-577 77-265 (293)
115 1a17_A Serine/threonine protei 98.8 1.7E-07 5.9E-12 80.1 15.1 127 449-577 15-145 (166)
116 3dra_A Protein farnesyltransfe 98.8 2.9E-06 1E-10 79.6 23.9 186 389-577 75-286 (306)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 4E-07 1.4E-11 87.0 18.5 219 325-571 4-254 (307)
118 3qou_A Protein YBBN; thioredox 98.8 1.5E-07 5.2E-12 88.8 15.3 135 444-580 114-250 (287)
119 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.4E-07 1.5E-11 82.2 17.5 173 356-549 13-218 (225)
120 2e2e_A Formate-dependent nitri 98.7 9E-08 3.1E-12 83.1 12.2 121 458-580 21-146 (177)
121 1na0_A Designed protein CTPR3; 98.7 2.6E-07 9E-12 74.4 13.8 114 448-563 10-125 (125)
122 2vyi_A SGTA protein; chaperone 98.7 2.5E-07 8.6E-12 75.2 13.4 116 448-565 13-130 (131)
123 2r5s_A Uncharacterized protein 98.7 1.5E-07 5E-12 81.6 12.3 156 384-543 9-172 (176)
124 2lni_A Stress-induced-phosphop 98.7 2.1E-07 7.3E-12 76.0 12.6 114 449-564 18-133 (133)
125 2c2l_A CHIP, carboxy terminus 98.7 5.6E-08 1.9E-12 91.5 9.9 189 380-578 3-199 (281)
126 2uy1_A Cleavage stimulation fa 98.7 1.2E-05 4E-10 81.8 27.6 81 194-274 28-117 (493)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.4E-07 1.8E-11 80.8 15.7 123 452-579 11-151 (213)
128 3rjv_A Putative SEL1 repeat pr 98.7 2E-06 6.9E-11 76.9 19.3 174 365-548 5-201 (212)
129 1p5q_A FKBP52, FK506-binding p 98.7 3.6E-07 1.2E-11 88.4 15.1 143 412-576 147-292 (336)
130 3upv_A Heat shock protein STI1 98.7 2.3E-07 7.8E-12 75.2 11.7 97 483-579 4-102 (126)
131 3dra_A Protein farnesyltransfe 98.6 1.1E-05 3.8E-10 75.7 23.9 161 395-558 124-302 (306)
132 3sz7_A HSC70 cochaperone (SGT) 98.6 7.9E-07 2.7E-11 75.9 14.8 96 483-578 11-108 (164)
133 2kck_A TPR repeat; tetratricop 98.6 2.9E-07 1E-11 72.5 10.9 98 483-580 6-108 (112)
134 2uy1_A Cleavage stimulation fa 98.6 4.6E-05 1.6E-09 77.5 29.7 201 229-440 197-412 (493)
135 1hxi_A PEX5, peroxisome target 98.6 2.3E-07 7.9E-12 74.4 10.2 95 485-579 19-115 (121)
136 3q49_B STIP1 homology and U bo 98.6 7E-07 2.4E-11 73.4 12.9 99 481-579 7-107 (137)
137 3gyz_A Chaperone protein IPGC; 98.6 9.6E-07 3.3E-11 73.6 13.1 105 443-549 31-138 (151)
138 2ifu_A Gamma-SNAP; membrane fu 98.6 4.1E-07 1.4E-11 86.9 12.1 195 360-576 5-222 (307)
139 2vgx_A Chaperone SYCD; alterna 98.5 2.4E-07 8.2E-12 77.4 8.9 108 443-552 16-126 (148)
140 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-06 3.7E-11 69.8 12.4 96 484-579 5-102 (118)
141 2qfc_A PLCR protein; TPR, HTH, 98.5 4.7E-06 1.6E-10 78.9 18.9 162 383-544 77-266 (293)
142 4gcn_A Protein STI-1; structur 98.5 4.1E-07 1.4E-11 73.7 9.7 95 484-578 9-112 (127)
143 4f3v_A ESX-1 secretion system 98.5 2.6E-06 9E-11 77.9 15.7 183 393-580 18-239 (282)
144 3u3w_A Transcriptional activat 98.5 1.1E-05 3.9E-10 76.2 21.0 158 387-544 81-266 (293)
145 1elw_A TPR1-domain of HOP; HOP 98.5 2.2E-06 7.6E-11 68.0 13.6 110 448-559 5-116 (118)
146 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-06 3.9E-11 77.6 13.0 166 393-579 16-187 (198)
147 1na0_A Designed protein CTPR3; 98.5 1.4E-06 4.8E-11 70.0 12.5 97 483-579 9-107 (125)
148 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.8E-11 76.1 12.1 127 423-552 21-152 (177)
149 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.7E-11 71.7 11.5 99 481-579 14-114 (133)
150 3gw4_A Uncharacterized protein 98.5 4.7E-06 1.6E-10 73.8 16.2 153 424-577 4-175 (203)
151 3upv_A Heat shock protein STI1 98.5 1.9E-06 6.4E-11 69.7 12.0 110 449-560 6-123 (126)
152 2dba_A Smooth muscle cell asso 98.4 5.3E-06 1.8E-10 69.0 14.9 110 448-560 29-144 (148)
153 2xcb_A PCRH, regulatory protei 98.4 1.5E-06 5.1E-11 72.0 11.1 105 449-555 20-126 (142)
154 2dba_A Smooth muscle cell asso 98.4 2.6E-06 8.7E-11 71.0 12.5 99 481-579 26-129 (148)
155 2vyi_A SGTA protein; chaperone 98.4 2.5E-06 8.5E-11 69.2 11.9 98 482-579 11-110 (131)
156 3sz7_A HSC70 cochaperone (SGT) 98.4 2.6E-06 8.8E-11 72.6 12.1 108 447-556 11-120 (164)
157 3rkv_A Putative peptidylprolyl 98.4 2.1E-06 7.2E-11 73.0 11.6 66 514-579 62-127 (162)
158 3gw4_A Uncharacterized protein 98.4 5.2E-06 1.8E-10 73.5 14.6 152 393-544 4-176 (203)
159 1a17_A Serine/threonine protei 98.4 6.6E-06 2.3E-10 70.0 14.7 129 413-544 14-146 (166)
160 4f3v_A ESX-1 secretion system 98.4 1.8E-06 6.2E-11 79.0 11.2 137 415-556 105-248 (282)
161 2hr2_A Hypothetical protein; a 98.4 1.9E-06 6.4E-11 71.0 10.0 91 489-579 17-132 (159)
162 3q49_B STIP1 homology and U bo 98.4 3.8E-06 1.3E-10 68.9 11.8 113 445-559 7-126 (137)
163 2xev_A YBGF; tetratricopeptide 98.3 4.8E-06 1.6E-10 67.4 11.3 91 489-579 8-106 (129)
164 1elr_A TPR2A-domain of HOP; HO 98.3 2.7E-06 9.4E-11 68.9 9.9 95 484-578 5-108 (131)
165 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.3E-11 77.3 8.2 96 484-579 39-152 (198)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.2E-06 2.1E-10 83.4 14.2 145 412-578 268-415 (457)
167 3q7a_A Farnesyltransferase alp 98.3 8.3E-05 2.8E-09 70.5 20.5 183 393-578 100-331 (349)
168 3k9i_A BH0479 protein; putativ 98.3 7.1E-07 2.4E-11 71.1 5.3 84 496-579 3-91 (117)
169 1wao_1 Serine/threonine protei 98.3 1.7E-06 5.9E-11 87.8 9.4 117 455-573 14-134 (477)
170 2c2l_A CHIP, carboxy terminus 98.3 7.2E-06 2.5E-10 76.9 12.8 113 446-560 3-117 (281)
171 4b4t_Q 26S proteasome regulato 98.3 2.4E-05 8.3E-10 78.7 17.2 189 389-577 12-244 (434)
172 1p5q_A FKBP52, FK506-binding p 98.2 9E-06 3.1E-10 78.5 13.2 95 380-475 146-258 (336)
173 1elr_A TPR2A-domain of HOP; HO 98.2 7.6E-06 2.6E-10 66.2 10.4 108 451-561 8-124 (131)
174 3ro3_A PINS homolog, G-protein 98.2 1.4E-05 5E-10 67.4 12.5 93 485-577 51-157 (164)
175 2kck_A TPR repeat; tetratricop 98.2 7.2E-06 2.5E-10 64.2 9.6 99 449-549 8-111 (112)
176 3dss_A Geranylgeranyl transfer 98.2 0.00021 7.1E-09 67.4 21.0 180 397-579 90-305 (331)
177 3q7a_A Farnesyltransferase alp 98.2 0.00067 2.3E-08 64.3 24.2 193 362-558 105-346 (349)
178 1hxi_A PEX5, peroxisome target 98.2 8.1E-06 2.8E-10 65.2 9.7 96 452-549 22-119 (121)
179 2if4_A ATFKBP42; FKBP-like, al 98.2 4.6E-06 1.6E-10 80.6 9.6 149 412-580 179-330 (338)
180 1ihg_A Cyclophilin 40; ppiase 98.2 1.1E-05 3.6E-10 78.9 12.2 137 413-570 224-362 (370)
181 2xev_A YBGF; tetratricopeptide 98.2 3.5E-05 1.2E-09 62.2 13.6 103 453-557 8-118 (129)
182 1wao_1 Serine/threonine protei 98.2 1.8E-05 6.2E-10 80.3 13.9 114 422-539 16-134 (477)
183 3rkv_A Putative peptidylprolyl 98.1 1E-05 3.5E-10 68.7 9.7 78 483-560 63-143 (162)
184 3k9i_A BH0479 protein; putativ 98.1 2.9E-06 1E-10 67.4 5.7 92 460-552 3-98 (117)
185 1dce_A Protein (RAB geranylger 98.1 0.00014 4.9E-09 75.1 19.4 171 394-567 42-244 (567)
186 4gcn_A Protein STI-1; structur 98.1 4.7E-05 1.6E-09 61.3 12.5 60 414-475 10-70 (127)
187 3n71_A Histone lysine methyltr 98.1 3.5E-05 1.2E-09 77.6 13.6 123 457-579 319-465 (490)
188 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.5E-10 77.3 9.7 150 381-549 179-333 (338)
189 2l6j_A TPR repeat-containing p 98.0 1.2E-05 3.9E-10 63.0 7.6 92 482-573 3-102 (111)
190 3ma5_A Tetratricopeptide repea 98.0 2.9E-05 1E-09 59.4 9.5 65 514-578 6-70 (100)
191 3ro3_A PINS homolog, G-protein 98.0 2.4E-05 8.3E-10 66.0 9.8 131 414-544 11-158 (164)
192 1na3_A Designed protein CTPR2; 98.0 3.7E-05 1.3E-09 57.4 9.6 81 483-563 9-91 (91)
193 4b4t_Q 26S proteasome regulato 98.0 8.8E-05 3E-09 74.5 15.3 159 419-577 11-203 (434)
194 1ihg_A Cyclophilin 40; ppiase 98.0 4.8E-05 1.6E-09 74.2 12.7 113 448-579 224-337 (370)
195 3dss_A Geranylgeranyl transfer 98.0 0.00055 1.9E-08 64.6 19.1 186 392-580 40-269 (331)
196 2kat_A Uncharacterized protein 98.0 2E-05 7E-10 62.2 8.1 79 501-579 3-83 (115)
197 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.5E-05 2.6E-09 75.4 13.9 65 515-579 317-381 (457)
198 2hr2_A Hypothetical protein; a 97.9 2E-05 6.9E-10 64.9 7.4 71 485-555 59-142 (159)
199 1zu2_A Mitochondrial import re 97.9 1E-05 3.5E-10 66.4 5.3 87 494-580 13-122 (158)
200 3bee_A Putative YFRE protein; 97.9 9.9E-05 3.4E-09 55.1 9.9 70 512-581 3-75 (93)
201 3n71_A Histone lysine methyltr 97.8 4.5E-05 1.6E-09 76.8 9.0 115 491-623 317-449 (490)
202 1klx_A Cysteine rich protein B 97.8 0.00023 7.8E-09 58.2 11.7 111 462-580 10-128 (138)
203 3qwp_A SET and MYND domain-con 97.8 6.2E-05 2.1E-09 74.7 8.7 116 491-624 295-428 (429)
204 2l6j_A TPR repeat-containing p 97.7 0.00012 4.2E-09 56.9 8.9 66 514-579 3-68 (111)
205 1dce_A Protein (RAB geranylger 97.7 0.0012 4E-08 68.3 17.2 151 425-579 42-222 (567)
206 1zu2_A Mitochondrial import re 97.6 6E-05 2E-09 61.9 5.3 88 462-551 17-127 (158)
207 2kat_A Uncharacterized protein 97.6 0.00035 1.2E-08 54.8 9.7 79 466-546 4-84 (115)
208 1na3_A Designed protein CTPR2; 97.6 0.00029 1E-08 52.3 8.6 66 514-579 8-73 (91)
209 1pc2_A Mitochondria fission pr 97.6 0.00058 2E-08 55.4 10.0 91 512-628 29-124 (152)
210 3ma5_A Tetratricopeptide repea 97.4 0.00043 1.5E-08 52.7 7.8 65 482-546 6-72 (100)
211 3qww_A SET and MYND domain-con 97.4 0.00026 9E-09 70.0 8.1 83 496-578 311-411 (433)
212 1wy6_A Hypothetical protein ST 97.4 0.022 7.5E-07 44.2 16.4 141 422-581 17-157 (172)
213 1klx_A Cysteine rich protein B 97.4 0.0027 9.1E-08 51.7 12.7 112 426-546 9-128 (138)
214 3lvg_A Clathrin heavy chain 1; 97.4 0.00014 4.9E-09 69.9 4.8 253 50-333 54-325 (624)
215 2kc7_A BFR218_protein; tetratr 97.3 0.0009 3.1E-08 50.7 7.8 55 524-578 9-64 (99)
216 2kc7_A BFR218_protein; tetratr 97.1 0.0025 8.5E-08 48.1 9.2 79 489-575 6-87 (99)
217 3ly7_A Transcriptional activat 97.1 0.014 4.7E-07 55.3 15.8 142 410-579 192-340 (372)
218 3lvg_A Clathrin heavy chain 1; 97.1 0.00013 4.5E-09 70.2 1.7 236 179-432 53-324 (624)
219 3qww_A SET and MYND domain-con 97.1 0.0055 1.9E-07 60.5 12.8 94 459-552 310-424 (433)
220 1nzn_A CGI-135 protein, fissio 96.9 0.0078 2.7E-07 46.8 10.0 90 512-627 32-126 (126)
221 3qwp_A SET and MYND domain-con 96.9 0.0096 3.3E-07 58.9 13.4 97 457-553 297-414 (429)
222 3ly7_A Transcriptional activat 96.8 0.014 4.7E-07 55.3 12.7 39 541-579 269-307 (372)
223 3u64_A Protein TP_0956; tetrat 96.8 0.0054 1.8E-07 55.5 9.4 87 499-585 179-276 (301)
224 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.2E-06 56.3 21.4 103 389-509 660-762 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.016 5.4E-07 44.2 9.3 71 486-556 8-87 (104)
226 1y8m_A FIS1; mitochondria, unk 96.5 0.11 3.6E-06 41.2 13.6 91 512-628 36-130 (144)
227 3bee_A Putative YFRE protein; 96.5 0.022 7.6E-07 42.2 9.4 69 480-548 3-76 (93)
228 1pc2_A Mitochondria fission pr 96.3 0.019 6.7E-07 46.5 8.9 73 481-553 30-109 (152)
229 3mkq_A Coatomer beta'-subunit; 96.1 0.15 5.2E-06 55.5 17.5 102 190-308 662-763 (814)
230 2v5f_A Prolyl 4-hydroxylase su 96.0 0.036 1.2E-06 42.1 8.8 66 514-579 4-76 (104)
231 3o48_A Mitochondria fission 1 95.9 0.059 2E-06 42.0 9.4 89 512-626 37-129 (134)
232 3mkq_B Coatomer subunit alpha; 95.8 0.65 2.2E-05 38.6 15.6 48 390-439 14-61 (177)
233 3mkq_B Coatomer subunit alpha; 95.6 0.58 2E-05 38.9 14.6 128 189-338 14-141 (177)
234 4gns_B Protein CSD3, chitin bi 95.5 0.06 2.1E-06 56.5 10.5 56 520-575 342-397 (754)
235 4h7y_A Dual specificity protei 95.4 0.12 4E-06 41.3 9.4 52 529-580 74-125 (161)
236 1qsa_A Protein (soluble lytic 95.0 3.8 0.00013 42.2 27.2 114 427-543 229-347 (618)
237 1nzn_A CGI-135 protein, fissio 95.0 0.24 8.3E-06 38.5 9.9 87 465-553 19-112 (126)
238 2wpv_A GET4, UPF0363 protein Y 94.9 2.3 7.8E-05 39.3 18.0 150 160-320 13-173 (312)
239 4ady_A RPN2, 26S proteasome re 94.4 6.6 0.00023 42.3 32.8 264 255-526 383-672 (963)
240 4h7y_A Dual specificity protei 94.2 0.46 1.6E-05 37.9 9.8 60 497-556 74-135 (161)
241 3u64_A Protein TP_0956; tetrat 93.9 0.16 5.6E-06 46.0 7.7 64 484-547 200-272 (301)
242 2wpv_A GET4, UPF0363 protein Y 93.8 4.1 0.00014 37.6 19.3 177 61-274 24-216 (312)
243 4b4t_P 26S proteasome regulato 93.1 3.4 0.00012 40.8 16.6 182 394-577 29-246 (445)
244 3lpz_A GET4 (YOR164C homolog); 93.0 5.8 0.0002 36.9 19.9 179 59-274 21-215 (336)
245 4ady_A RPN2, 26S proteasome re 92.4 14 0.00048 39.9 29.9 248 290-543 383-657 (963)
246 1wy6_A Hypothetical protein ST 92.3 3.3 0.00011 32.4 13.1 61 415-476 94-154 (172)
247 1qsa_A Protein (soluble lytic 91.7 14 0.00047 38.2 35.7 384 176-583 68-484 (618)
248 3ffl_A Anaphase-promoting comp 91.2 1.2 4.2E-05 36.3 8.7 123 441-575 12-148 (167)
249 2ff4_A Probable regulatory pro 91.0 0.8 2.7E-05 44.4 9.2 69 517-585 173-246 (388)
250 3txn_A 26S proteasome regulato 88.8 17 0.00059 34.8 17.9 158 385-543 23-209 (394)
251 3ffl_A Anaphase-promoting comp 88.8 3.5 0.00012 33.6 9.6 27 484-510 123-149 (167)
252 4gns_B Protein CSD3, chitin bi 88.6 5.9 0.0002 41.8 13.7 54 120-207 345-398 (754)
253 1zbp_A Hypothetical protein VP 87.6 11 0.00039 33.5 12.8 54 421-475 6-59 (273)
254 2p58_C Putative type III secre 87.3 6.9 0.00024 28.5 9.4 85 261-350 22-106 (116)
255 2uwj_G Type III export protein 87.0 6.4 0.00022 28.6 8.7 86 261-351 21-106 (115)
256 1y8m_A FIS1; mitochondria, unk 86.4 7.6 0.00026 30.7 9.8 73 480-552 36-114 (144)
257 3o48_A Mitochondria fission 1 86.4 3.9 0.00013 31.9 8.1 71 481-551 38-114 (134)
258 2ff4_A Probable regulatory pro 85.9 6.1 0.00021 38.2 11.5 71 415-486 174-248 (388)
259 1v54_E Cytochrome C oxidase po 85.5 4.2 0.00014 29.8 7.3 62 428-491 26-87 (109)
260 2p58_C Putative type III secre 85.0 9.2 0.00032 27.9 9.0 73 28-104 20-92 (116)
261 1wdy_A 2-5A-dependent ribonucl 84.1 16 0.00055 32.9 13.3 115 185-307 7-128 (285)
262 3ltj_A Alpharep-4; protein eng 83.6 19 0.00066 30.4 18.3 80 48-127 26-105 (201)
263 4fhn_B Nucleoporin NUP120; pro 83.3 23 0.00077 40.0 16.1 166 284-466 815-990 (1139)
264 3ltm_A Alpha-REP4; protein eng 82.9 21 0.00073 30.5 17.7 18 209-226 124-141 (211)
265 3esl_A Checkpoint serine/threo 82.8 16 0.00055 30.9 11.0 83 500-582 61-148 (202)
266 3txn_A 26S proteasome regulato 82.7 35 0.0012 32.7 21.2 27 283-309 21-47 (394)
267 1v54_E Cytochrome C oxidase po 81.6 13 0.00046 27.2 9.0 46 511-556 41-86 (109)
268 4fhn_B Nucleoporin NUP120; pro 81.2 19 0.00065 40.6 14.5 51 418-473 818-868 (1139)
269 1zbp_A Hypothetical protein VP 81.2 2.5 8.6E-05 37.7 5.8 58 492-549 6-65 (273)
270 4b4t_P 26S proteasome regulato 80.7 45 0.0016 32.7 17.0 184 326-509 30-244 (445)
271 3ltm_A Alpha-REP4; protein eng 79.0 30 0.001 29.5 18.0 155 47-239 30-184 (211)
272 2y69_E Cytochrome C oxidase su 78.4 9.4 0.00032 29.7 7.3 61 429-491 70-130 (152)
273 2uwj_G Type III export protein 76.2 20 0.00069 26.1 9.3 87 361-452 21-107 (115)
274 4a1g_A Mitotic checkpoint seri 75.0 31 0.0011 27.7 10.0 80 500-582 52-134 (152)
275 3eiq_C Programmed cell death p 74.5 16 0.00055 34.5 9.5 65 385-449 221-290 (358)
276 3ltj_A Alpharep-4; protein eng 73.3 41 0.0014 28.3 17.6 142 178-327 26-167 (201)
277 2y69_E Cytochrome C oxidase su 72.9 31 0.0011 26.9 9.0 46 511-556 84-129 (152)
278 2wvi_A Mitotic checkpoint seri 70.6 42 0.0014 27.4 10.2 80 500-582 47-129 (164)
279 4b4t_R RPN7, 26S proteasome re 69.3 9.5 0.00033 37.4 7.2 61 449-509 133-194 (429)
280 1wdy_A 2-5A-dependent ribonucl 67.8 67 0.0023 28.6 13.9 49 257-305 190-240 (285)
281 2qx5_A Nucleoporin NIC96; mRNA 67.6 1.2E+02 0.0041 31.4 17.9 80 318-408 300-383 (661)
282 4b4t_R RPN7, 26S proteasome re 67.0 42 0.0015 32.7 11.3 95 383-477 133-238 (429)
283 2nsz_A Programmed cell death p 63.0 36 0.0012 26.5 7.9 64 84-147 10-78 (129)
284 2zu6_B Programmed cell death p 60.9 76 0.0026 29.1 10.9 63 385-447 170-237 (307)
285 3lpz_A GET4 (YOR164C homolog); 60.1 1.1E+02 0.0038 28.4 29.4 166 283-475 37-215 (336)
286 3esl_A Checkpoint serine/threo 56.2 92 0.0032 26.3 10.3 67 414-482 82-149 (202)
287 3ljn_A Hypothetical protein; a 55.0 37 0.0013 32.1 8.4 19 288-306 248-266 (364)
288 2ion_A PDCD4, programmed cell 55.0 33 0.0011 27.7 6.6 64 84-147 12-80 (152)
289 3eu9_A Huntingtin-interacting 54.9 96 0.0033 26.5 10.7 21 57-77 46-66 (240)
290 3jxi_A Vanilloid receptor-rela 50.0 53 0.0018 29.0 8.1 26 121-146 11-36 (260)
291 4g8k_A 2-5A-dependent ribonucl 49.9 1.6E+02 0.0054 27.1 14.5 56 19-78 26-84 (337)
292 2qx5_A Nucleoporin NIC96; mRNA 48.5 2.5E+02 0.0086 29.1 16.3 25 115-139 155-179 (661)
293 3kea_A K1L; tropism, ANK repea 47.8 1.5E+02 0.0053 26.5 12.0 18 58-75 36-53 (285)
294 1k1a_A B-cell lymphoma 3-encod 46.8 1.4E+02 0.0047 25.6 12.6 86 21-107 12-102 (241)
295 4aez_C MAD3, mitotic spindle c 46.4 1.1E+02 0.0039 26.3 8.8 77 501-580 102-181 (223)
296 4gq2_M Nucleoporin NUP120; bet 45.2 2E+02 0.0069 31.5 13.0 46 517-562 899-949 (950)
297 1n11_A Ankyrin; clathrin, BAND 44.6 99 0.0034 29.9 9.8 204 186-407 17-235 (437)
298 2d2s_A Exocyst complex compone 44.0 83 0.0028 27.5 7.9 22 218-239 25-46 (235)
299 2d2s_A Exocyst complex compone 43.7 67 0.0023 28.1 7.3 28 481-508 89-116 (235)
300 3eu9_A Huntingtin-interacting 43.7 1.5E+02 0.0052 25.2 10.9 15 191-205 17-31 (240)
301 3eiq_C Programmed cell death p 43.4 2.1E+02 0.0073 26.8 16.9 69 214-286 220-293 (358)
302 4g8k_A 2-5A-dependent ribonucl 42.8 2E+02 0.0069 26.4 13.7 57 184-245 26-86 (337)
303 3ljn_A Hypothetical protein; a 42.8 54 0.0018 30.9 7.3 15 391-405 180-194 (364)
304 2ion_A PDCD4, programmed cell 42.8 1E+02 0.0036 24.7 7.7 64 384-447 12-80 (152)
305 2pk8_A Uncharacterized protein 42.5 23 0.00079 25.1 3.2 26 607-632 14-39 (103)
306 2nsz_A Programmed cell death p 42.4 1.2E+02 0.004 23.5 9.1 64 384-447 10-78 (129)
307 1ya0_A SMG-7 transcript varian 38.8 99 0.0034 30.8 8.5 43 527-569 164-206 (497)
308 4b4t_S RPN3, 26S proteasome re 37.7 82 0.0028 31.3 7.5 63 448-510 232-297 (523)
309 4b4t_S RPN3, 26S proteasome re 37.3 86 0.003 31.2 7.6 64 485-548 233-303 (523)
310 3b7b_A Euchromatic histone-lys 37.1 1.9E+02 0.0067 24.6 9.9 81 22-107 15-100 (237)
311 1oyz_A Hypothetical protein YI 36.2 2.3E+02 0.0078 25.1 21.6 18 178-195 140-157 (280)
312 3jxi_A Vanilloid receptor-rela 36.0 1.3E+02 0.0045 26.2 8.5 90 218-307 9-116 (260)
313 4a1g_A Mitotic checkpoint seri 35.8 1.7E+02 0.0058 23.4 9.6 53 429-482 82-135 (152)
314 1n11_A Ankyrin; clathrin, BAND 35.2 3.1E+02 0.011 26.3 11.9 53 21-77 17-71 (437)
315 3hra_A Ankyrin repeat family p 34.0 1.7E+02 0.0058 24.1 8.5 19 189-207 11-29 (201)
316 2fu4_A Ferric uptake regulatio 32.3 1.2E+02 0.0042 20.8 6.6 61 235-296 6-67 (83)
317 3kae_A CDC27, possible protein 32.3 2.1E+02 0.0072 23.5 15.8 80 392-473 44-140 (242)
318 1oyz_A Hypothetical protein YI 32.3 2.7E+02 0.0091 24.6 23.4 10 317-326 147-156 (280)
319 1k1a_A B-cell lymphoma 3-encod 32.2 2.4E+02 0.0081 24.0 12.7 29 118-146 12-40 (241)
320 3bqo_A Telomeric repeat-bindin 32.1 2.3E+02 0.0078 23.8 8.0 37 521-557 123-159 (211)
321 3kea_A K1L; tropism, ANK repea 31.8 1.3E+02 0.0045 27.0 7.8 181 388-583 35-222 (285)
322 2r9g_A AAA ATPase, central reg 30.6 2.4E+02 0.0084 23.7 9.5 39 423-462 25-63 (204)
323 3ygs_P Procaspase 9; apoptosis 30.2 64 0.0022 23.5 4.2 36 65-100 52-87 (97)
324 2wvi_A Mitotic checkpoint seri 29.7 2.3E+02 0.0077 23.1 10.0 54 429-483 77-131 (164)
325 1ug3_A EIF4GI, eukaryotic prot 29.5 3.5E+02 0.012 25.1 11.8 224 54-293 15-256 (339)
326 2rfa_A Transient receptor pote 28.1 2.7E+02 0.0093 23.5 9.8 56 220-279 127-184 (232)
327 2p1h_A APAF-1, apoptotic prote 28.1 1.6E+02 0.0056 20.9 6.9 65 34-102 24-88 (94)
328 3ygs_P Procaspase 9; apoptosis 28.1 97 0.0033 22.5 4.9 38 295-332 51-88 (97)
329 3d9h_A CDNA FLJ77766, highly s 27.1 3.2E+02 0.011 24.2 9.6 23 16-38 13-35 (285)
330 3mv2_A Coatomer subunit alpha; 26.6 3.8E+02 0.013 24.6 13.9 61 505-579 195-257 (325)
331 4aez_C MAD3, mitotic spindle c 25.7 3.2E+02 0.011 23.5 8.3 53 429-482 131-184 (223)
332 3bge_A Predicted ATPase; struc 24.9 3.1E+02 0.011 23.0 7.8 39 423-461 18-56 (201)
333 2pnn_A Transient receptor pote 24.7 3.4E+02 0.012 23.7 9.3 50 222-271 21-79 (273)
334 3kae_A CDC27, possible protein 24.6 2.9E+02 0.01 22.6 9.3 80 494-576 44-141 (242)
335 3hra_A Ankyrin repeat family p 24.2 2.9E+02 0.01 22.5 10.4 13 367-379 159-171 (201)
336 3t8k_A Uncharacterized protein 24.0 2.4E+02 0.0083 23.2 7.5 165 88-281 10-186 (186)
337 3bu8_A Telomeric repeat-bindin 23.8 1.9E+02 0.0066 24.6 6.3 48 463-510 88-141 (235)
338 1g6u_A Domain swapped dimer; d 23.6 19 0.00065 20.4 0.2 21 614-634 4-24 (48)
339 3bu8_A Telomeric repeat-bindin 23.6 2.6E+02 0.0088 23.9 7.0 48 428-475 88-142 (235)
340 2zu6_B Programmed cell death p 23.4 4.3E+02 0.015 24.1 12.5 86 284-369 6-99 (307)
341 3i5p_A Nucleoporin NUP170; hel 22.1 6E+02 0.02 25.4 11.6 66 511-579 174-247 (525)
342 2etb_A Transient receptor pote 21.8 60 0.0021 28.5 3.4 55 20-75 4-68 (256)
343 2fe3_A Peroxide operon regulat 21.6 2.1E+02 0.0072 22.5 6.2 63 436-500 11-73 (145)
344 3ctd_A Putative ATPase, AAA fa 21.4 3.8E+02 0.013 22.8 8.8 39 423-461 46-84 (213)
345 2p1h_A APAF-1, apoptotic prote 21.2 2.3E+02 0.0078 20.1 6.6 37 294-330 49-85 (94)
346 3qye_A TBC1 domain family memb 21.1 4.9E+02 0.017 23.9 10.8 75 232-306 209-287 (331)
347 3bqo_A Telomeric repeat-bindin 20.7 1.6E+02 0.0054 24.7 5.1 23 55-77 122-144 (211)
348 4ets_A Ferric uptake regulatio 20.5 2.8E+02 0.0094 22.4 6.8 69 228-297 14-85 (162)
349 2crb_A Nuclear receptor bindin 20.4 1.5E+02 0.0053 21.2 4.3 26 550-575 16-41 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-40 Score=355.32 Aligned_cols=478 Identities=8% Similarity=-0.069 Sum_probs=392.7
Q ss_pred HHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCC--CCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 006580 60 YSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIP--EPDVVSWNSMISGYASCGYSDYALEMFSK 137 (640)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~~~~~~a~~~~~~ 137 (640)
+.+.|....+...++.++.+++..|+.++..+.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|+.+|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4556677777777887777788888888888888888888888888876 37777888888888888888888888887
Q ss_pred HHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCC--------
Q 006580 138 MQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEEL-------- 209 (640)
Q Consensus 138 m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------- 209 (640)
+.. .+++..+++.++.+|.+.|++++|.++|+++...
T Consensus 143 ~~~-----------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 143 EDL-----------------------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp TCG-----------------------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------
T ss_pred Hhc-----------------------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccc
Confidence 754 4557788899999999999999999999965433
Q ss_pred -----------CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHhccCCchHH--HHH-HHHHHH
Q 006580 210 -----------DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY-TISIVINACTKLRNLDKG--KQV-FALSVK 274 (640)
Q Consensus 210 -----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~ 274 (640)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+...+...+..+.+ ..+ +..+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 37789999999999999999999999998854 5443 444444433333222221 111 444455
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHH
Q 006580 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR--WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352 (640)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 352 (640)
.+..+...+++.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 344 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL 344 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH
Confidence 55555666788889999999999999999999987 789999999999999999999999999999865 336778888
Q ss_pred HHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCh
Q 006580 353 VLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRA 428 (640)
Q Consensus 353 ~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 428 (640)
++..+.. |+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 8888888 99999999999998664 6678899999999999999999999999886 34688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 508 (640)
++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|++
T Consensus 424 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 424 DQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999863 457789999999999999999999999999874 345788999999999999999999999999
Q ss_pred CC-------CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 509 MP-------FQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 509 ~~-------~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+. ..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 85 3676 78999999999999999999999999999999999999999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-39 Score=343.19 Aligned_cols=475 Identities=9% Similarity=-0.039 Sum_probs=357.2
Q ss_pred CChhHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCC--CCChhhHHHHHHH
Q 006580 13 ASLSYCSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIP--QKNCISWNICLRG 90 (640)
Q Consensus 13 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~ 90 (640)
++...|+.++..+.+.|++++|..+++++.+. .|+..++..++.+|.+.|++++|..+|+.+. .+++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56778999999999999999999999999865 4677889999999999999999999999984 5788999999999
Q ss_pred HhcCCChhHHHHHhccCCCC-------------------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHH
Q 006580 91 LLKSDNLDTALKVFDEIPEP-------------------DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFS 151 (640)
Q Consensus 91 ~~~~~~~~~A~~~~~~~~~~-------------------~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 151 (640)
|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+ |+..+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHH
Confidence 99999999999999965443 37899999999999999999999999998853 4433322
Q ss_pred HHHHHHh--c----hhHHHHH-HHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC--CCeeeHHHHHHHHH
Q 006580 152 ILLSTVS--S----ACHGKQI-HGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--LDIISWNSLISGCF 222 (640)
Q Consensus 152 ~ll~~~~--~----~~~a~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 222 (640)
..+..+. . ......+ +..+...+ ......+|+.++..|.+.|++++|.++|+.+.+ ++..+|+.++..|.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 2222222 1 1111111 33344433 344555677778888888889999999988876 67888888888888
Q ss_pred hcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 006580 223 NSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVR 302 (640)
Q Consensus 223 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 302 (640)
+.|++++|+.+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 8888888888888887754 3366678888888888888888888888887654 3456667777777777777777777
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCC
Q 006580 303 LFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDS 379 (640)
Q Consensus 303 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 379 (640)
+|+++.+ .+..+|+.++..|.+.|++++|+++|+++.+.+
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------------- 437 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------------------------------- 437 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------------
Confidence 7766542 345566666666666666666666666655431
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY 459 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 459 (640)
..+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+
T Consensus 438 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 438 -----------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFN 487 (597)
T ss_dssp -----------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred -----------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 1244556666666666677777777777766642 3355667777777777
Q ss_pred cCCHHHHHHHHHHhHHhh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChH
Q 006580 460 GGFVDKGMLVFSAMKEEY---GVMPG--EEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVK 532 (640)
Q Consensus 460 ~~~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 532 (640)
.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. .+.+..+|..++..|...|+++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 777777777777765532 44565 5678888888888888888888887765 3447889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 533 LTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
+|.+.++++++.+|.++..+..++.+|..
T Consensus 568 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 568 LAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999887753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.2e-26 Score=230.93 Aligned_cols=371 Identities=11% Similarity=0.010 Sum_probs=292.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHH
Q 006580 119 ISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYY 198 (640)
Q Consensus 119 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 198 (640)
...+.+.|++++|+..++++.+. .|.+...+..+...+...|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~----------------------------------~p~~~~~~~~l~~~~~~~~~~~~ 51 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ----------------------------------EPDNTGVLLLLSSIHFQCRRLDR 51 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----------------------------------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 45567788888888888887764 45556666667777777888888
Q ss_pred HHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHH
Q 006580 199 AFGVFLNME---ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE-YTISIVINACTKLRNLDKGKQVFALSVK 274 (640)
Q Consensus 199 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (640)
|...++... ..+..+|..+...+.+.|++++|+..|+++... .|+. .+|..+..++...|++++|.+.++.+++
T Consensus 52 a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887776654 235567778888888888888888888887763 3544 3677778888888888888888888877
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHH
Q 006580 275 VGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351 (640)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 351 (640)
.. +.+...+..+...+...|++++|.+.|+++.+ .+..+|+.+...+...|++++|...|+++.+. .
T Consensus 130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~------- 199 (388)
T 1w3b_A 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--D------- 199 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--C-------
T ss_pred hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-------
Confidence 64 22445666777777778888888888877653 34567777888888888888888888877663 2
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCCh
Q 006580 352 CVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRA 428 (640)
Q Consensus 352 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~ 428 (640)
+.+...+..+...+...|++++|...|++.. .| +..++..+...+...|++
T Consensus 200 --------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 200 --------------------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp --------------------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH
Confidence 2234455677788888889999988888765 33 577888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 508 (640)
++|++.|+++.+.+ +.+..++..+...+.+.|++++|+..++++.+. .+.+...+..+...+.+.|++++|.+.+++
T Consensus 254 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 254 DLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999852 334568889999999999999999999999874 456788999999999999999999999999
Q ss_pred CC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 509 MP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 509 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
+. ..| +..++..+...+.+.|++++|...++++++.+|.++..|..++.++...|+
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 87 445 688999999999999999999999999999999999999999998887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.2e-28 Score=244.31 Aligned_cols=183 Identities=14% Similarity=0.199 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-C---------ChHHHHHHHHHHHHhCCCCchH
Q 006580 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-P---------PVEHGSQFHSMAIKSGFDSNAV 382 (640)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~---------~~~~a~~~~~~~~~~~~~~~~~ 382 (640)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|+. + .++.|..+++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35778889999999999999999999999999999999999999875 4 3688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006580 383 VASSLMEMYAKTGSIDSSTEIFVKLD----KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458 (640)
Q Consensus 383 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 458 (640)
+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 58999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA 496 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 496 (640)
+.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999998 9999999999999988763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-25 Score=222.97 Aligned_cols=352 Identities=13% Similarity=0.103 Sum_probs=281.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006580 218 ISGCFNSGYGELALDQFYSMRYSGYSPDE-YTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296 (640)
Q Consensus 218 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 296 (640)
...+.+.|++++|.+.++++.+. .|+. ..+..+...+...|++++|...++..++.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44566677777777777777653 2443 344555556667777777777777776654 3456677777777888888
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHH-HHhhCCC-CChHHHHHHHHH
Q 006580 297 LEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC-VLSSIPI-PPVEHGSQFHSM 371 (640)
Q Consensus 297 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-~l~~~~~-~~~~~a~~~~~~ 371 (640)
+++|...|+++.+ .+..+|..+..++.+.|++++|.+.|+++.+. .|+...... +-..+.. |++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888877777653 23456777777888888888888888777764 455444333 3334444 888888888877
Q ss_pred HHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CH
Q 006580 372 AIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--K-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DR 447 (640)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~ 447 (640)
+.+.. +.+...+..+...+.+.|++++|...|+++. . .+...|..+...+...|++++|+..+++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 77764 4567788899999999999999999999987 3 35678899999999999999999999999884 45 46
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRAS 525 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 525 (640)
.++..+...+...|++++|+..++++.+. .+.+...|..+...+.+.|++++|.+.++++. .+.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 78889999999999999999999999873 34457789999999999999999999999987 555889999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|++++|...++++++..|+++..+..++.+|.+.|++++|...++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998743
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.2e-27 Score=241.47 Aligned_cols=211 Identities=9% Similarity=0.051 Sum_probs=172.0
Q ss_pred hHHHHHHHHhHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 006580 228 ELALDQFYSMRYSGYSPDEY-TISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQ 306 (640)
Q Consensus 228 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (640)
..+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34555666777766655543 57788888888888888888888888888888888888888888776653321
Q ss_pred cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHH
Q 006580 307 LDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVAS 385 (640)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 385 (640)
.+.+..+.|.++|++|.+.|+.||..||+.+|.+|++ |+++.|..+++.|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2344567889999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006580 386 SLMEMYAKTGSIDSSTEIFVKLD----KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460 (640)
Q Consensus 386 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 460 (640)
++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999997 6899999999999999999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.5e-23 Score=215.22 Aligned_cols=215 Identities=11% Similarity=-0.038 Sum_probs=172.2
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFE 436 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 436 (640)
|+++.|...++.+.+.... ...+..+...|...|++++|...++.+.+ .+...|..+...+...|++++|+..++
T Consensus 251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5555555555554444322 55667788888888888888888887763 366788888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---C
Q 006580 437 ELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F---Q 512 (640)
Q Consensus 437 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~ 512 (640)
++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++. . .
T Consensus 329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 998853 335567888888899999999999999988864 23456788888999999999999999998875 2 2
Q ss_pred CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 513 PG----CSIWESILRASAI---YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 513 ~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
++ ...+..+...+.. .|++++|...++++++.+|.++..+..++.+|.+.|++++|...++++.+..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22 3488888999999 8999999999999999999999999999999999999999999999988765
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.2e-21 Score=198.65 Aligned_cols=320 Identities=12% Similarity=0.045 Sum_probs=222.8
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006580 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292 (640)
Q Consensus 213 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (640)
.+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 34444444444455555555555444321 1233344444445555555555555555554443 123444555555555
Q ss_pred hcCCHHHHHHHHHhcCCCC---h---hhHHHH------------HHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006580 293 KCNRLEDSVRLFEQLDRWD---Y---AVINVM------------ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354 (640)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l 354 (640)
+.|++++|...|+++.+.+ . ..|..+ ...+...|++++|+..|+++.+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------- 172 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV------------- 172 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 5555555555555543321 1 333333 33456666666676666666542
Q ss_pred hhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHH
Q 006580 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAET 431 (640)
Q Consensus 355 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 431 (640)
. +.+...+..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|
T Consensus 173 ---------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 173 ---------------------C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp ---------------------C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1 3455667888899999999999999999886 35788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHH------------HHHHhccCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHH
Q 006580 432 LDVFEELLEEGLPPDRI-TLAAV------------LLACNYGGFVDKGMLVFSAMKEEYGVMPG-----EEHYACIIDLL 493 (640)
Q Consensus 432 ~~~~~~m~~~g~~p~~~-~~~~l------------l~~~~~~~~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 493 (640)
+..|+++... .|+.. .+..+ ...|...|++++|+..|+.+.+. .|+ ...+..+..++
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9999999974 55543 44443 77889999999999999999875 344 45788899999
Q ss_pred HhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH------------HH
Q 006580 494 CQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ------------AY 559 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~ 559 (640)
.+.|++++|++.++++. ..| +..+|..++.+|...|++++|...++++++.+|.++..+..++. .|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999986 344 78999999999999999999999999999999999999999984 45
Q ss_pred HhcC-----ChHHHHHHHHH
Q 006580 560 AMRG-----RWEAIVRVKKV 574 (640)
Q Consensus 560 ~~~g-----~~~~a~~~~~~ 574 (640)
...| +.+++.+.+++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHH
T ss_pred HHhCCCccCCHHHHHHHHHH
Confidence 5555 55666777765
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.4e-22 Score=206.45 Aligned_cols=261 Identities=12% Similarity=0.001 Sum_probs=192.6
Q ss_pred cCCchHHHHHHHHHHH-----hCC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHH
Q 006580 259 LRNLDKGKQVFALSVK-----VGF--------LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR--WDYAVINVMISTYG 323 (640)
Q Consensus 259 ~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 323 (640)
.|+++.|...++.+.+ ..- +.+..++..+...+...|++++|...|+++.+ ++..+|..+...+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 5667777776666665 211 11233455555666666666666666655532 22445555566666
Q ss_pred hCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 006580 324 RYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403 (640)
Q Consensus 324 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 403 (640)
..|++++|...++++.+.. +.+...+..+...|...|++++|...
T Consensus 282 ~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLD-----------------------------------SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTC-----------------------------------TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcC-----------------------------------cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666666666666655431 33445567778888888899999888
Q ss_pred HHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 006580 404 FVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480 (640)
Q Consensus 404 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 480 (640)
|+++. ..+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+...-.
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 327 FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 88775 3356788888999999999999999999998852 3356788888899999999999999999987652222
Q ss_pred CC----hhHHHHHHHHHHh---cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 481 PG----EEHYACIIDLLCQ---AGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 481 p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
++ ...+..+...+.. .|++++|.+.++++. .+.+..++..+...+...|++++|...++++++.+|.++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 32 3488899999999 999999999999886 34478889999999999999999999999999999998887
Q ss_pred HHHH
Q 006580 552 YSLL 555 (640)
Q Consensus 552 ~~~l 555 (640)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.9e-21 Score=204.11 Aligned_cols=422 Identities=10% Similarity=-0.025 Sum_probs=234.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhh
Q 006580 112 VVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYG 191 (640)
Q Consensus 112 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 191 (640)
...|..+...+.+.|++++|+..|+++.+. .|.+...+..+..+|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------~p~~~~~~~~la~~~~ 70 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------------------------------DPNEPVFYSNISACYI 70 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------------------------------CCCCcHHHHHHHHHHH
Confidence 356777888899999999999999999875 3344455555555555
Q ss_pred cCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHH
Q 006580 192 KLGVLYYAFGVFLNME---ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268 (640)
Q Consensus 192 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 268 (640)
..|++++|.+.|+.+. ..+...+..+...+...|++++|+..|+.+.. .|+... ..+..+...+....+...
T Consensus 71 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~ 145 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKV 145 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHH
Confidence 5555555555555543 12344455555555555555555555542211 121111 111122222333444555
Q ss_pred HHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhC--------CChHHHHHHH
Q 006580 269 FALSVKVGF--LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYA---VINVMISTYGRY--------GFGEVALELF 335 (640)
Q Consensus 269 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~ 335 (640)
++.++.... .+........+..+....+.+.+...+......+.. ....+...+... |++++|..+|
T Consensus 146 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 146 LNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp HHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 544433210 001111122233344444444444444443332222 222222222111 3455566666
Q ss_pred HHHhhCCCCCChh--------hHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 336 QLMLREDIRPTEF--------TLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406 (640)
Q Consensus 336 ~~m~~~~~~p~~~--------t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 406 (640)
+++.+. .|+.. .+..+-..+.. |+++.|...+..+.+.. |+...+..+...+...|++++|...|++
T Consensus 226 ~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 226 HSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 655543 22211 12222222333 56666666666665543 3355556666666667777777777666
Q ss_pred CC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh
Q 006580 407 LD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483 (640)
Q Consensus 407 ~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 483 (640)
+. ..+..+|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+.
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 55 2345667777777777777777777777777642 223456666777777777777777777777654 23345
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-C-------CCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcC
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP-F-------QPGCSIWESILRASAIY----------GDVKLTENVAERMMDLQ 545 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 545 (640)
..+..+...+...|++++|.+.++++. . ......+..+...+... |++++|...++++++.+
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 566777777777777777777777654 1 11222344445566666 77888888888888888
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 546 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8777888888888888888888888888777654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.8e-21 Score=196.91 Aligned_cols=352 Identities=12% Similarity=0.047 Sum_probs=263.3
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME---ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIV 252 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 252 (640)
.|.+...+..+...+.+.|++++|..+|+.+. ..+...|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 57788889999999999999999999999876 3467788899999999999999999999998754 2345678888
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhh
Q 006580 253 INACTKLRNLDKGKQVFALSVKVGFLSNS---IVLSAT------------IDLFSKCNRLEDSVRLFEQLDR---WDYAV 314 (640)
Q Consensus 253 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 314 (640)
..++...|++++|...++.+.+... .+. ..+..+ ...+.+.|++++|...|+++.+ .+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999987642 233 444444 4458899999999999998764 46778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006580 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394 (640)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 394 (640)
+..+...|.+.|++++|...|+++.+.. +.+...+..+..+|...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-----------------------------------NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-----------------------------------CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHHHHHHc
Confidence 8999999999999999999999987642 23344455666666666
Q ss_pred CChHHHHHHHHhCC--CC-ChhHHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 006580 395 GSIDSSTEIFVKLD--KR-DLVSWNTI------------MMGLTQNGRAAETLDVFEELLEEGLPPD-----RITLAAVL 454 (640)
Q Consensus 395 g~~~~A~~~~~~~~--~~-~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll 454 (640)
|++++|...|+++. .| +...+..+ ...+...|++++|+..|+++.+. .|+ ...+..+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 66666666666655 22 23333333 77788889999999999988873 454 34677778
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH--------
Q 006580 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRA-------- 524 (640)
Q Consensus 455 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-------- 524 (640)
..+.+.|++++|+..++.+.+. .+.+...|..+..+|...|++++|.+.++++. ..| +...+..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 8888889999999999888764 23467788888888999999999999888876 555 56666666533
Q ss_pred ----HHHcC-----ChHHHHHHHHH-HHhcCCCCh----------hHHHHHHHHHHhcCChHHH
Q 006580 525 ----SAIYG-----DVKLTENVAER-MMDLQLPSP----------LPYSLLTQAYAMRGRWEAI 568 (640)
Q Consensus 525 ----~~~~~-----~~~~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~a 568 (640)
|...| +.+++.+.+++ +++..|++. ..+..+..+|...|+.+++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 32333 56778888886 667777432 2455666666666665543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.4e-21 Score=205.18 Aligned_cols=428 Identities=12% Similarity=0.019 Sum_probs=294.6
Q ss_pred hhHHHHHHHHhcCCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 006580 82 ISWNICLRGLLKSDNLDTALKVFDEIPE---PDVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVS 158 (640)
Q Consensus 82 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 158 (640)
..|..+...+.+.|++++|++.|+++.+ .++..|..+..+|.+.|++++|+..|+++.+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 88 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI----------------- 88 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------
Confidence 3556666677777777777777776652 45667777778888888888888888887764
Q ss_pred chhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhH
Q 006580 159 SACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMR 238 (640)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 238 (640)
.|.+...+..+..++...|++++|...|+.+. .+....+..+..+...+....|...++++.
T Consensus 89 -----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 150 (537)
T 3fp2_A 89 -----------------KPDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENL 150 (537)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHC
T ss_pred -----------------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777788888877776432 222222333445555555677777777775
Q ss_pred HC------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch-hHHHHHHHHHHh--------cCCHHHHHHH
Q 006580 239 YS------GYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS-IVLSATIDLFSK--------CNRLEDSVRL 303 (640)
Q Consensus 239 ~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--------~g~~~~A~~~ 303 (640)
.. ...|+... +..+....+.+.+...+..... ..+.. .....+...+.. .|++++|..+
T Consensus 151 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 151 SKDEGRGSQVLPSNTS----LASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp C-------CCCCCHHH----HHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred HhCccccccccchHhH----HHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 42 11222222 2223333333333222111100 01111 122222222221 2467888888
Q ss_pred HHhcCCCC----------hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHH
Q 006580 304 FEQLDRWD----------YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMA 372 (640)
Q Consensus 304 ~~~~~~~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~ 372 (640)
++++.+.+ ..++..+...+...|++++|...|++..+. .|+...+..+...+.. |+++.|...+..+
T Consensus 225 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88776522 124666677888899999999999998885 4556677777777777 9999999999998
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006580 373 IKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449 (640)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 449 (640)
.+.. +.+..++..+...+...|++++|...|+++. ..+...|..+...+...|++++|+..++++.+.. +.+...
T Consensus 303 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 303 VDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred hccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 8875 5567888999999999999999999999887 2356789999999999999999999999999853 445568
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCC
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP----GEEHYACIIDLLCQA----------GQLGKAIDITSTMP--FQP 513 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~ 513 (640)
+..+...+...|++++|...++++.+...-.+ ....+..+...+.+. |++++|...++++. .+.
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999876521111 122345556777888 99999999999987 344
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSL 554 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 554 (640)
+...+..+...+...|++++|.+.++++++..|.+......
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 78899999999999999999999999999999988766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=6e-18 Score=167.24 Aligned_cols=299 Identities=10% Similarity=-0.004 Sum_probs=196.9
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHH
Q 006580 254 NACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEV 330 (640)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 330 (640)
..+...|++++|...++.+++.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence 33334444444444444443332 12333444444444555555555555444432 233455556666666666666
Q ss_pred HHHHHHHHhhCCCCC---ChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 006580 331 ALELFQLMLREDIRP---TEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKL 407 (640)
Q Consensus 331 a~~~~~~m~~~~~~p---~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 407 (640)
|...|++..+. .| +.......+. .+. .......+...+...|++++|...|+++
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~---------------~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLV---------------KAD------EMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHH---------------HHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHH---------------HHH------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666553 23 1111100000 000 0111233456777888888888888877
Q ss_pred C---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChh
Q 006580 408 D---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE 484 (640)
Q Consensus 408 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~ 484 (640)
. ..+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~ 223 (359)
T 3ieg_A 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 223 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchH
Confidence 6 3466778888888888999999999998888752 445667888888888889999999998888764 122223
Q ss_pred HHH------------HHHHHHHhcCChHHHHHHHHhCC-CCC-CHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 485 HYA------------CIIDLLCQAGQLGKAIDITSTMP-FQP-GCS----IWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 485 ~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
.+. .+...+.+.|++++|.+.++++. ..| +.. .+..+...+...|++++|...++++++.+|
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 222 23667889999999999998876 344 332 355677888999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 547 PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.++..+..++.+|...|++++|...++++.+..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988754
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.8e-16 Score=168.20 Aligned_cols=500 Identities=9% Similarity=0.062 Sum_probs=317.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCCh
Q 006580 18 CSQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNL 97 (640)
Q Consensus 18 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 97 (640)
...|+..+-+.+++.-....++.-...| ..++.++|+|...|...++-.+. .+. .|..--..++.-||..+|+
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~----~n~~yd~~~vgkyce~rDp 914 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLR----ENPYYDSRVVGKYCEKRDP 914 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--Hhh----ccCcccHHHHHHHHHhcCc
Confidence 5667777778888888888888888888 77889999999999876543321 111 1222222344445555555
Q ss_pred hHHHHHhccCCC--------CCcchHHHHHHHHHhCCChHHH-----------HHHHHHH----HHCCCCCChhhHHHHH
Q 006580 98 DTALKVFDEIPE--------PDVVSWNSMISGYASCGYSDYA-----------LEMFSKM----QLQGVRPSGFTFSILL 154 (640)
Q Consensus 98 ~~A~~~~~~~~~--------~~~~~y~~li~~~~~~~~~~~a-----------~~~~~~m----~~~g~~p~~~t~~~ll 154 (640)
..|.-.+++=.- ..-..|-...+-+.+..+.+-= .++.+.- ......|+..+...-.
T Consensus 915 ~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKa 994 (1630)
T 1xi4_A 915 HLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994 (1630)
T ss_pred chHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHH
Confidence 444444433100 0001111122222222111110 0111111 1112233333322222
Q ss_pred HHHh-chhHHHHHHHHHHHhCC-CCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHH
Q 006580 155 STVS-SACHGKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALD 232 (640)
Q Consensus 155 ~~~~-~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 232 (640)
.+.. ...++.++++..+..+. +..+...-+.|+.+..+. +..+..+..+.....+ ...+...+...|.+++|..
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHH
Confidence 2222 55566666665553321 223445555566555555 3444444444444222 3446677777888888888
Q ss_pred HHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 006580 233 QFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDY 312 (640)
Q Consensus 233 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 312 (640)
+|++... .....+.++ ...+++++|.++.+.. .+..+|..+..++.+.|++++|++.|.+. .|.
T Consensus 1071 IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1071 IFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred HHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 8877421 111122222 2667778877777644 34667778888888888888888888664 566
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
..|..++.++.+.|++++|.+.|....+.. ++....+.+..++++ +.++....+. + .++...+..+...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRC 1205 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHH
Confidence 777778888888888888888888766643 332223346666666 7766544332 1 34555666788888
Q ss_pred HhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 471 (640)
...|++++|...|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8999999999999885 48888999999999999999988876 345788888888888888888888765
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCC-
Q 006580 472 AMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIY--GDVKLTENVAERMMDLQL- 546 (640)
Q Consensus 472 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p- 546 (640)
. +..++..+..++..|.+.|.+++|+.+++... ..| ....|+.|...+.+. ++..++.++|..-+...|
T Consensus 1275 ~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1275 H------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred h------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 3 33466778889999999999999999998876 344 566787777777765 367777777776666555
Q ss_pred ----CChhHHHHHHHHHHhcCChHHHHH
Q 006580 547 ----PSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 547 ----~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
.+...|..+...|.+.|+|+.|..
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 677889999999999999999984
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=6.5e-18 Score=167.00 Aligned_cols=309 Identities=12% Similarity=0.013 Sum_probs=223.2
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006580 213 SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFS 292 (640)
Q Consensus 213 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (640)
.+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34455556666666666666666665532 2234456666666666666666666666666653 224456666666777
Q ss_pred hcCCHHHHHHHHHhcCCCCh------hhHHHH------------HHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006580 293 KCNRLEDSVRLFEQLDRWDY------AVINVM------------ISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354 (640)
Q Consensus 293 ~~g~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l 354 (640)
..|++++|...|+++.+.++ ..+..+ ...+...|++++|...++++.+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 150 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC------------ 150 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------
Confidence 77777777777766644222 222222 456666777777777777665531
Q ss_pred hhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHH
Q 006580 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAET 431 (640)
Q Consensus 355 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 431 (640)
+.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 151 -----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 151 -----------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33455667788889999999999999988763 4677888999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHH------------HHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-h----hHHHHHHHHH
Q 006580 432 LDVFEELLEEGLPPDR-ITLA------------AVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-E----EHYACIIDLL 493 (640)
Q Consensus 432 ~~~~~~m~~~g~~p~~-~~~~------------~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~----~~~~~l~~~~ 493 (640)
...+++..+. .|+. ..+. .+...+...|++++|...++.+.+. .|+ . ..+..+...+
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHH
Confidence 9999999884 3443 3332 2356688899999999999999875 233 2 2355678899
Q ss_pred HhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 494 CQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
...|++++|.+.++++. ..| +..+|..+...+...|++++|...++++++.+|.++..+..+..+....+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999987 444 78899999999999999999999999999999999999988887766543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.2e-17 Score=162.94 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=192.7
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 006580 245 DEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMIST 321 (640)
Q Consensus 245 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 321 (640)
+...+..+...+...|++++|.++++.+++.. +.+...+..++.++...|++++|...++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 33344444444444455555555555554443 12233334444455555555555555554432 234455555566
Q ss_pred HHhCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHH
Q 006580 322 YGRYG-FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSS 400 (640)
Q Consensus 322 ~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 400 (640)
+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-----------------------------------KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-----------------------------------TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-----------------------------------CccHHHHHHHHHHHHHccCHHHH
Confidence 66666 6666666666655431 22233445566667777777777
Q ss_pred HHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhh
Q 006580 401 TEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477 (640)
Q Consensus 401 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 477 (640)
...|++.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 77776665 2245566778888888899999999998888752 4455678888888888999999999988887642
Q ss_pred C-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 478 G-------VMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 478 ~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
. .+.....+..+...+.+.|++++|.+.++++. .+.+...+..+...+...|++++|...++++++.+|.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1 13345688889999999999999999998876 34467889999999999999999999999999999999
Q ss_pred hhHHHHHHHHH-HhcCChH
Q 006580 549 PLPYSLLTQAY-AMRGRWE 566 (640)
Q Consensus 549 ~~~~~~l~~~~-~~~g~~~ 566 (640)
+..+..++.++ ...|+.+
T Consensus 304 ~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHTTTTC--
T ss_pred hHHHHHHHHHHHHHhCchh
Confidence 99999999988 4556543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.4e-17 Score=160.89 Aligned_cols=263 Identities=10% Similarity=-0.017 Sum_probs=212.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006580 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354 (640)
Q Consensus 278 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l 354 (640)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|...++++.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------ 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------------ 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC------------
Confidence 44555666667777777777777777776643 234455556666666777777777776665531
Q ss_pred hhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHH
Q 006580 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG-SIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAE 430 (640)
Q Consensus 355 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 430 (640)
+.+...+..+...+...| ++++|...|++..+ .+...|..+...+...|++++
T Consensus 87 -----------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 87 -----------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp -----------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred -----------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 334566677888999999 99999999998763 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 431 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
|++.++++.+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++++.
T Consensus 144 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 144 AMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999853 334567777889999999999999999998863 34567889999999999999999999998875
Q ss_pred -C----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 511 -F----------QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 511 -~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
. +.+..++..+...+...|++++|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 1 3356799999999999999999999999999999999999999999999999999999999976654
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=4.9e-16 Score=162.05 Aligned_cols=401 Identities=8% Similarity=-0.003 Sum_probs=276.9
Q ss_pred HHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCC--C-CeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 006580 168 GSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEE--L-DIISWNSLISGCFNSGYGELALDQFYSMRYSGYSP 244 (640)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 244 (640)
+..++. .|.+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|++.... .|
T Consensus 3 e~al~~--~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 3 EKKLEE--NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHH--CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhHhhh--CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 334444 5667777777777 3667888888888887763 2 4456777777777888888888888887764 35
Q ss_pred CcchHHHHHHHH-hccCCchHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhcC
Q 006580 245 DEYTISIVINAC-TKLRNLDKGKQ----VFALSVKV-GFLS-NSIVLSATIDLFSK---------CNRLEDSVRLFEQLD 308 (640)
Q Consensus 245 ~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 308 (640)
+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 655555555422 34566666554 56555543 4433 34566666665544 577888888887766
Q ss_pred C-CCh---hhHHHHHHH---H----------HhCCChHHHHHHHHHH------hhCC---CCCCh--------hhHHHHH
Q 006580 309 R-WDY---AVINVMIST---Y----------GRYGFGEVALELFQLM------LRED---IRPTE--------FTLSCVL 354 (640)
Q Consensus 309 ~-~~~---~~~~~li~~---~----------~~~~~~~~a~~~~~~m------~~~~---~~p~~--------~t~~~~l 354 (640)
+ |.. ..|...... + .+.+++..|..++..+ .+.. +.|+. ..|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 5 211 123221111 0 1234566777766653 2221 23331 2333333
Q ss_pred hhC----CC-CCh----HHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------cCChH-------HHHHHHHhCCC--
Q 006580 355 SSI----PI-PPV----EHGSQFHSMAIKSGFDSNAVVASSLMEMYAK-------TGSID-------SSTEIFVKLDK-- 409 (640)
Q Consensus 355 ~~~----~~-~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~-- 409 (640)
... .. ++. ..+..+++++.... +.++..+..++..+.+ .|+++ +|..+|++..+
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 211 11 232 36667888888763 5677888888888775 69987 89999998763
Q ss_pred -C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hh
Q 006580 410 -R-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR--ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EE 484 (640)
Q Consensus 410 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~ 484 (640)
| +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+. .|+ ..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~ 391 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHH 391 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchH
Confidence 4 577899999999999999999999999998 46653 47888888888899999999999998763 333 33
Q ss_pred HHHHHHHH-HHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh----HHHHHHH
Q 006580 485 HYACIIDL-LCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPL----PYSLLTQ 557 (640)
Q Consensus 485 ~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~ 557 (640)
.|...+.. +...|++++|.++|++.. ..| ++..|..++..+...|+.++|..+++++++..|.++. .|...+.
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33333322 346899999999999876 444 6889999999999999999999999999998776554 7888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 006580 558 AYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 558 ~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.....|+.+.+..+.+++.+.-
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888999999999999998754
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4e-14 Score=152.79 Aligned_cols=416 Identities=11% Similarity=0.090 Sum_probs=302.4
Q ss_pred chhhHHHHHHHHHccCCchHHHHHHhcCCC-CC-----hhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHH
Q 006580 49 HTYLGNRCLDLYSRFGTSDDVLQLFDEIPQ-KN-----CISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGY 122 (640)
Q Consensus 49 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~ 122 (640)
++.--...++.|...|.+.+|+++++++.- ++ ...-+.++.+..+. +..+..++.+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 444456778888899999999999999763 22 24556677666666 4555555555544322 45578888
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHH
Q 006580 123 ASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202 (640)
Q Consensus 123 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 202 (640)
...|.+++|..+|++.. -.......++..+.++++|.++.+.. .+..+|..+..++...|++++|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999963 22333455666666788888777644 3678899999999999999999999
Q ss_pred HhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh
Q 006580 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSI 282 (640)
Q Consensus 203 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 282 (640)
|... .|...|..++.++.+.|++++|+++|...++.. ++....+.+..+|++.++++....+. + .++..
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 9774 677788899999999999999999999887754 44433445888999999888644443 2 34666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CC
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PP 361 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~ 361 (640)
.+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+-.+|.. |+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence 7778999999999999999999986 48999999999999999999999976 355788888888877 88
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 006580 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEEL 438 (640)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 438 (640)
+..|...... +..++..+..++..|.+.|.+++|..+++.... .....|+-+...|++. ++++.++.++-.
T Consensus 1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 8887765543 344566677899999999999999999987763 3556777777777765 344444444444
Q ss_pred HHCC-CCC------CHHHHHHHHHHHhccCCHHHHHHHHHHh----------HHhhCCCCChhHHHHHHHHHHhcC----
Q 006580 439 LEEG-LPP------DRITLAAVLLACNYGGFVDKGMLVFSAM----------KEEYGVMPGEEHYACIIDLLCQAG---- 497 (640)
Q Consensus 439 ~~~g-~~p------~~~~~~~ll~~~~~~~~~~~A~~~~~~~----------~~~~~~~p~~~~~~~l~~~~~~~g---- 497 (640)
.+++ ++| +...|..++-.|.+.|+++.|....-+- .+...-..+++.|...+.-|...+
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~l 1419 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 1419 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHH
Confidence 4432 333 3456778888888899999887322111 000012345666666666665555
Q ss_pred -----------ChHHHHHHHHh
Q 006580 498 -----------QLGKAIDITST 508 (640)
Q Consensus 498 -----------~~~~A~~~~~~ 508 (640)
+++++.++|.+
T Consensus 1420 ndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1420 NDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHHHhhhcCChHHHHHHHHH
Confidence 66677666663
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=7.8e-17 Score=153.12 Aligned_cols=245 Identities=9% Similarity=0.037 Sum_probs=183.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHH
Q 006580 285 SATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH 364 (640)
Q Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~ 364 (640)
..+..+|...|+++.|+..++....++..++..+...+...++.++|++.++++...+..|+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~------------------ 99 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT------------------ 99 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS------------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC------------------
Confidence 34455666666666666655544334444555666666666666666666666665544443
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006580 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP 444 (640)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 444 (640)
++..+..+..++.+.|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+. .
T Consensus 100 ---------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 100 ---------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred ---------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 333445667889999999999999998 567888999999999999999999999999985 4
Q ss_pred CCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 006580 445 PDRITL---AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWE 519 (640)
Q Consensus 445 p~~~~~---~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 519 (640)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++. ..| ++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 12334445668999999999999885 45678889999999999999999999999977 455 788999
Q ss_pred HHHHHHHHcCChHH-HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 520 SILRASAIYGDVKL-TENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 520 ~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
.++..+...|+.++ +.++++++++.+|.++.+.. ...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 99999999999876 67899999999999986554 456666776665543
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.8e-15 Score=154.63 Aligned_cols=364 Identities=10% Similarity=-0.053 Sum_probs=276.2
Q ss_pred chhHHHHHHHhhhc----CCChHHHHHHHhccCC-CCeeeHHHHHHHHHh----cCChhHHHHHHHHhHHCCCCCCcchH
Q 006580 179 NVVLGNSLIDMYGK----LGVLYYAFGVFLNMEE-LDIISWNSLISGCFN----SGYGELALDQFYSMRYSGYSPDEYTI 249 (640)
Q Consensus 179 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~ 249 (640)
+...+..|...|.. .+++++|...|+...+ .+...+..|...|.. .+++++|...|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66666777777776 7888888888877653 456677777788887 888889999988887754 45566
Q ss_pred HHHHHHHhc----cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHH
Q 006580 250 SIVINACTK----LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK----CNRLEDSVRLFEQLDR-WDYAVINVMIS 320 (640)
Q Consensus 250 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 320 (640)
..+...+.. .+++++|...|+...+.| +...+..|..+|.. .++.++|.++|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666667766 778889999888888775 55667777788877 7788899988887654 45667777877
Q ss_pred HHHh----CCChHHHHHHHHHHhhCCCCCChhhHHHHHhhC----CC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 321 TYGR----YGFGEVALELFQLMLREDIRPTEFTLSCVLSSI----PI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 321 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~----~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
.|.. .++.++|.+.|++..+.|. ...+..+-..+ .. ++.++|..+++...+.+ ++..+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8877 7888999999988887652 22222222222 23 78888888888887764 345556677777
Q ss_pred Hh----cCChHHHHHHHHhCCC-CChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006580 392 AK----TGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQN-----GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461 (640)
Q Consensus 392 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 461 (640)
.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 7899999999988764 4667777888888877 89999999999998865 3455666666666655
Q ss_pred ---CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 006580 462 ---FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ----AGQLGKAIDITSTMPFQPGCSIWESILRASAI----YGD 530 (640)
Q Consensus 462 ---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 530 (640)
++++|++.|++..+. .+...+..|...|.. .+++++|.+.+++.....++..+..|...|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 788999999988774 367788888888888 78999999999887634467888888888887 789
Q ss_pred hHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHh
Q 006580 531 VKLTENVAERMMDLQLP---SPLPYSLLTQAYAM 561 (640)
Q Consensus 531 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 561 (640)
+++|...++++.+.+|+ ++.....++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999843 67777777665554
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.4e-16 Score=152.46 Aligned_cols=222 Identities=9% Similarity=0.078 Sum_probs=84.1
Q ss_pred ccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 62 RFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMFSKMQLQ 141 (640)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~ 141 (640)
+.|++++|.+.++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 567788888888888555 4888899999999999999998865 366778888888888889999998877766653
Q ss_pred CCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHH
Q 006580 142 GVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGC 221 (640)
Q Consensus 142 g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 221 (640)
.+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|
T Consensus 91 -----------------------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~ 132 (449)
T 1b89_A 91 -----------------------------------ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRC 132 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTC---C------------
T ss_pred -----------------------------------CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHH
Confidence 12355567788888888888888877753 6667888888888
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 006580 222 FNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV 301 (640)
Q Consensus 222 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 301 (640)
...|.+++|..+|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|.
T Consensus 133 ~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 8888888888888876 36788888888888888888888776 26778888888888888888887
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhC
Q 006580 302 RLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLRE 341 (640)
Q Consensus 302 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 341 (640)
.....+. ..+.-...++..|.+.|++++|..+++.....
T Consensus 198 ~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 198 MCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 6665544 23333445777888888888888888877643
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6.3e-17 Score=160.62 Aligned_cols=255 Identities=13% Similarity=-0.009 Sum_probs=188.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 006580 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392 (640)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 392 (640)
.+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.. |+++.|...++.+.+.. +.+...+..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555432 1122333333333333 55555555555555543 445666777788888
Q ss_pred hcCChHHHHHHHHhCCC--C-ChhHHHH---------------HHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHH
Q 006580 393 KTGSIDSSTEIFVKLDK--R-DLVSWNT---------------IMMGLTQNGRAAETLDVFEELLEEGLPP---DRITLA 451 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~ 451 (640)
..|++++|...|+++.. | +...+.. .+..+...|++++|+..++++.+. .| +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHH
Confidence 88888888888877652 2 2222211 233344889999999999999985 34 467888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcC
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F-QPGCSIWESILRASAIYG 529 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~ 529 (640)
.+...+...|++++|+..++++.+. .+.+...+..+...+.+.|++++|.+.++++. . +.+...+..+...+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999998874 24457789999999999999999999999986 3 447889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCC-----------hhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 530 DVKLTENVAERMMDLQLPS-----------PLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
++++|...++++++..|.+ ..+|..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999998877 78999999999999999999998764
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=5.3e-17 Score=157.04 Aligned_cols=287 Identities=13% Similarity=0.050 Sum_probs=118.1
Q ss_pred cCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 006580 192 KLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFAL 271 (640)
Q Consensus 192 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 271 (640)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567788999999988655 48889999999999999999988652 6777888889999999999999997777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHH
Q 006580 272 SVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLS 351 (640)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 351 (640)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 4557788889999999999988887775 366678888899999999999999998876 3677
Q ss_pred HHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 006580 352 CVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAE 430 (640)
Q Consensus 352 ~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 430 (640)
.+..++.+ |+++.|.+.+..+ .++.++..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 77777777 7777777777766 266777788888888888888876666554 333344467777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC------ChhHHHHHHHHHHhcCChHHHHH
Q 006580 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP------GEEHYACIIDLLCQAGQLGKAID 504 (640)
Q Consensus 431 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 504 (640)
|+.+++...... +--...|+.+.-++++- ++++.++.++...++.+++| +...|..++-.|..-++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 888888777532 22334555555555543 34444444443333334444 35567777788888888887776
Q ss_pred HHHhC
Q 006580 505 ITSTM 509 (640)
Q Consensus 505 ~~~~~ 509 (640)
.+-+-
T Consensus 304 tm~~h 308 (449)
T 1b89_A 304 TMMNH 308 (449)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 65544
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=2.3e-14 Score=147.79 Aligned_cols=353 Identities=12% Similarity=0.029 Sum_probs=290.3
Q ss_pred CCCeeeHHHHHHHHHh----cCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCC
Q 006580 208 ELDIISWNSLISGCFN----SGYGELALDQFYSMRYSGYSPDEYTISIVINACTK----LRNLDKGKQVFALSVKVGFLS 279 (640)
Q Consensus 208 ~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 279 (640)
..+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.|+...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4466777778888888 899999999999998864 55677778888887 899999999999998876
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHhhCCCCCChhhH
Q 006580 280 NSIVLSATIDLFSK----CNRLEDSVRLFEQLDRW-DYAVINVMISTYGR----YGFGEVALELFQLMLREDIRPTEFTL 350 (640)
Q Consensus 280 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~ 350 (640)
+...+..|..+|.. .+++++|..+|++..+. +..++..|...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677788888988 88999999999987654 56678888888887 789999999999998875 33333
Q ss_pred HHHHhh----CCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCC-CCChhHHHHHHH
Q 006580 351 SCVLSS----IPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK----TGSIDSSTEIFVKLD-KRDLVSWNTIMM 420 (640)
Q Consensus 351 ~~~l~~----~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 420 (640)
..+-.. ... ++.++|...+....+.+ ++..+..+...|.. .+++++|...|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222 233 89999999999998875 45667778888886 889999999999876 456777888888
Q ss_pred HHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 421 GLTQ----NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG-----GFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 421 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
.|.. .+++++|++.|++..+.| +...+..+...+... +++++|+..+++..+. + +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8887 899999999999998765 445666677777766 8999999999998875 3 4567788888
Q ss_pred HHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh---
Q 006580 492 LLCQAG---QLGKAIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM--- 561 (640)
Q Consensus 492 ~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 561 (640)
.|...| ++++|++.+++.....++..+..|...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888766 789999999988744678899999999988 899999999999999875 57889999999998
Q ss_pred -cCChHHHHHHHHHHHhCCCc
Q 006580 562 -RGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 562 -~g~~~~a~~~~~~m~~~~~~ 581 (640)
.+++++|..++++..+.+..
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999988743
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.8e-16 Score=157.11 Aligned_cols=270 Identities=9% Similarity=-0.042 Sum_probs=180.1
Q ss_pred cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 006580 246 EYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTY 322 (640)
Q Consensus 246 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 322 (640)
...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3446666666666666666666666666554 22445555555555555555555555555432 2334455555555
Q ss_pred HhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHH
Q 006580 323 GRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTE 402 (640)
Q Consensus 323 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 402 (640)
...|++++|...|+++.+. .|+.. ..+..+
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~---------------------------------~~~~~~--------------- 173 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYK---------------------------------YLVKNK--------------- 173 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHH---------------------------------CC-------------------
T ss_pred HccccHHHHHHHHHHHHHh--Cccch---------------------------------HHHhhh---------------
Confidence 5555555555555554431 11000 000000
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 006580 403 IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP-PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481 (640)
Q Consensus 403 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 481 (640)
......+..+...+...|++++|++.++++.+.... ++..++..+...+...|++++|+..++++.+. .+.
T Consensus 174 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 245 (365)
T 4eqf_A 174 ------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPE 245 (365)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred ------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 011233455677888899999999999999985311 15778888999999999999999999998874 344
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLP------------ 547 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------ 547 (640)
+...|..+..+|.+.|++++|.+.++++. ..| +..++..+...|...|++++|...++++++..|.
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 325 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhh
Confidence 67789999999999999999999999887 444 6889999999999999999999999999999765
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 548 SPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
+...|..++.++...|+.+.+..+.++
T Consensus 326 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 326 SGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 367899999999999999988887654
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.9e-16 Score=155.64 Aligned_cols=232 Identities=11% Similarity=0.032 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 006580 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390 (640)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (640)
+...|..+...+.+.|++++|...|+++.+.. +.+...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------p~~~~~~~~lg~~ 108 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----------------------------------PGDAEAWQFLGIT 108 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------cCCHHHHHHHHHH
Confidence 34457777888888888888888888877632 3345566778888
Q ss_pred HHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHH
Q 006580 391 YAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI-----------TLAAVLLA 456 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----------~~~~ll~~ 456 (640)
|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..++++.+. .|+.. .+..+...
T Consensus 109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-----------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHH
Confidence 888999999999988876 245778999999999999999999999999884 34332 23345778
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
+...|++++|+..++++.+.....++...+..+...|.+.|++++|++.++++. .+.+..+|..+...+...|++++|
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999998762222368899999999999999999999999987 444788999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...++++++.+|.++..+..++.+|.+.|++++|...++++.+..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998754
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.3e-15 Score=142.91 Aligned_cols=244 Identities=10% Similarity=-0.014 Sum_probs=198.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHH
Q 006580 289 DLFSKCNRLEDSVRLFEQLDRWDY----AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEH 364 (640)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~ 364 (640)
+-....|+++.|+..++.....++ .....+..+|...|+++.|+..++.. .
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~-------------------- 61 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----S-------------------- 61 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----S--------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----C--------------------
Confidence 345567899999999888765432 34456778999999999988755431 1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD----KR-DLVSWNTIMMGLTQNGRAAETLDVFEELL 439 (640)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (640)
+|+...+..+...+...++.++|.+.++++. .| +...+..+...+...|++++|++.+++
T Consensus 62 -------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 62 -------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp -------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred -------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 3445566778889999999999999999864 24 566777788999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 006580 440 EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEH---YACIIDLLCQAGQLGKAIDITSTMP--FQPG 514 (640)
Q Consensus 440 ~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 514 (640)
+.+...+..+...+.+.|++++|.+.++.+.+. .|+... ...++..+...|++++|..+|+++. .+.+
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 456778889999999999999999999999876 355321 1233455556699999999999987 5568
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 006580 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA-IVRVKKVMRKNG 579 (640)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 579 (640)
+..|+.+..++...|++++|+..++++++.+|.++.++..++.++...|++++ +.++++++.+..
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999976 578999888765
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1e-14 Score=152.13 Aligned_cols=396 Identities=12% Similarity=0.036 Sum_probs=259.8
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhh
Q 006580 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190 (640)
Q Consensus 111 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 190 (640)
|...|..++. +.+.|+++.|..+|+++.+. +|.+...|..++..+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~----------------------------------~P~~~~~w~~~~~~~ 56 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ----------------------------------FPSSGRFWKLYIEAE 56 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT----------------------------------CTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH----------------------------------CCCCHHHHHHHHHHH
Confidence 4556777776 36677777777777777765 566666777777777
Q ss_pred hcCCChHHHHHHHhccCC--CCeeeHHHHHHHH-HhcCChhHHHH----HHHHhHH-CCCCCCc-chHHHHHHHHhc---
Q 006580 191 GKLGVLYYAFGVFLNMEE--LDIISWNSLISGC-FNSGYGELALD----QFYSMRY-SGYSPDE-YTISIVINACTK--- 258 (640)
Q Consensus 191 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~-~~~~~~~~A~~----~~~~m~~-~g~~p~~-~t~~~ll~~~~~--- 258 (640)
.+.|++++|..+|++... |++..|...+... ...|+.+.|.+ +|++... .|..|+. ..|...+.....
T Consensus 57 ~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 57 IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 777777777777777653 4444555554322 23456655544 5555433 2444432 344444444332
Q ss_pred ------cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH-------------HhcCCHHHHHHHHHh-------cCC---
Q 006580 259 ------LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLF-------------SKCNRLEDSVRLFEQ-------LDR--- 309 (640)
Q Consensus 259 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~-------~~~--- 309 (640)
.|+++.|..+|+..++....+....|....... .+.+++..|..++.. +..
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 566777777777776621111112332222111 123456666665554 111
Q ss_pred ---CC--------hhhHHHHHHHHHhC----CCh----HHHHHHHHHHhhCCCCC-ChhhHHHHHhhCC--------CCC
Q 006580 310 ---WD--------YAVINVMISTYGRY----GFG----EVALELFQLMLREDIRP-TEFTLSCVLSSIP--------IPP 361 (640)
Q Consensus 310 ---~~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p-~~~t~~~~l~~~~--------~~~ 361 (640)
|+ ...|...+...... ++. ..+..+|++.... .| +...|......+. .|+
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 11 23455544333222 222 3677788887764 33 3334444433332 377
Q ss_pred hH-------HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCC-h-hHHHHHHHHHHhCCChHH
Q 006580 362 VE-------HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRD-L-VSWNTIMMGLTQNGRAAE 430 (640)
Q Consensus 362 ~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~-~~~~~li~~~~~~g~~~~ 430 (640)
++ .|..+++...+.-.|.+...+..++..+.+.|++++|..+|+++. .|+ . ..|..++..+.+.|++++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 66 888888888864345678888999999999999999999999887 343 3 478999998999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 431 TLDVFEELLEEGLPPD-RITLAAVLLA-CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITST 508 (640)
Q Consensus 431 a~~~~~~m~~~g~~p~-~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 508 (640)
|.++|++..+. .|+ ...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++
T Consensus 375 A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 375 GRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 99999999985 333 3333332222 335899999999999988752 34578899999999999999999999999
Q ss_pred CC-C---CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 509 MP-F---QP--GCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 509 ~~-~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
+. . .| ....|...+......|+.+.+..+.+++.+..|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 76 2 22 2448988899999999999999999999999883
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.2e-15 Score=155.00 Aligned_cols=363 Identities=12% Similarity=-0.010 Sum_probs=207.1
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhC------CC
Q 006580 213 SWNSLISGCFNSGYGELALDQFYSMRYS-----G--YSP-DEYTISIVINACTKLRNLDKGKQVFALSVKVG------FL 278 (640)
Q Consensus 213 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~ 278 (640)
.||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++.+.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 4555555555555555555555544321 0 112 22355666666666666666666666554421 01
Q ss_pred -CchhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--C-ChhhHHHHHHH---HHhCCChHHHHHHHHHHhhCCCCCChh-
Q 006580 279 -SNSIVLSATIDLFSKC--NRLEDSVRLFEQLDR--W-DYAVINVMIST---YGRYGFGEVALELFQLMLREDIRPTEF- 348 (640)
Q Consensus 279 -~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~- 348 (640)
....++..+..++.+. +++++|++.|++..+ | +...+..+... +...++.++|++.+++..+. .|+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchH
Confidence 1223444444444433 356777777776543 2 33344443333 34456667777777776653 33322
Q ss_pred hHHHH---HhhC-CC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHH
Q 006580 349 TLSCV---LSSI-PI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMM 420 (640)
Q Consensus 349 t~~~~---l~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~ 420 (640)
.+..+ +..+ .. ++.+.|...++...... +.+..++..+...|.+.|++++|...|.+.. .| +..++..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 22221 1122 23 77778888887777765 5566677788888888889988888888876 23 4455665555
Q ss_pred HHHh-------------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 006580 421 GLTQ-------------------NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481 (640)
Q Consensus 421 ~~~~-------------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 481 (640)
+|.. .+.++.|...+++..+.. +.+..++..+...+...|++++|+..|++..+. ...|
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~ 367 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTP 367 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCC
Confidence 5432 123567888888887742 333456778888999999999999999988764 3222
Q ss_pred Ch--hHHHHHHH-HHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 482 GE--EHYACIID-LLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 482 ~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
.. ..+..+.. .+...|+.++|++.+++.. +.|+...... ....+..++++.++.+|.++.+|..|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 21 12233333 2357789999999998876 6665443222 2345667888889999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCccCCceeeE
Q 006580 558 AYAMRGRWEAIVRVKKVMRKNGINKVTGCSWI 589 (640)
Q Consensus 558 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 589 (640)
+|...|++++|++.+++..+.+.......+|+
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHCC-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999988765433334443
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=4.8e-16 Score=154.22 Aligned_cols=298 Identities=10% Similarity=-0.012 Sum_probs=180.7
Q ss_pred hcCChhHHHH-HHHHhHHCC---CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 006580 223 NSGYGELALD-QFYSMRYSG---YSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLE 298 (640)
Q Consensus 223 ~~~~~~~A~~-~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 298 (640)
..|++++|+. .+++..... ...+...+..+...+...|++++|...++.+++.. +.+..++..+..++.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 555443221 01123456666666666677777777776666653 234556666777777777777
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHh
Q 006580 299 DSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKS 375 (640)
Q Consensus 299 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~ 375 (640)
+|...|+++.+ .+..++..+...+...|++++|...|+++.+.. |+.......+ +.....
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~---------- 178 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-----EEGAGG---------- 178 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-----HHHhhh----------
Confidence 77777766543 355667777777788888888888888777643 3222110000 000000
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006580 376 GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR---DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITL 450 (640)
Q Consensus 376 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 450 (640)
..+ ...+..+...+ ..|++++|...|+++. .| +...+..+...+...|++++|+..++++.+.. +.+..++
T Consensus 179 -~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 179 -AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 000 00111222223 6677777777777765 23 35677777778888888888888888877742 3345677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C-----------HHH
Q 006580 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-G-----------CSI 517 (640)
Q Consensus 451 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~-----------~~~ 517 (640)
..+...+...|++++|+..++++.+. .+.+...+..+..+|.+.|++++|.+.++++. ..| + ..+
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 77777788888888888888877764 23456677778888888888888888877765 112 2 577
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 518 WESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 518 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
|..+..++...|++++|..++++.++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 888888888888888888887765543
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=6.1e-16 Score=150.61 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=132.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 006580 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 501 (640)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 667788999999999998853 446678888889999999999999999998874 24457788999999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------ChhHHHHHHHHHHhcCChHH
Q 006580 502 AIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP------------SPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 502 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~ 567 (640)
|.+.++++. .+.+..++..+...+...|++++|...++++++..|. ++..+..++.++.+.|++++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 999999876 3447889999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHH
Q 006580 568 IVRVKKVM 575 (640)
Q Consensus 568 a~~~~~~m 575 (640)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 99988744
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=4.2e-14 Score=145.44 Aligned_cols=390 Identities=12% Similarity=-0.009 Sum_probs=230.5
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhh
Q 006580 111 DVVSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMY 190 (640)
Q Consensus 111 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 190 (640)
....||.|...+...|++++|++.|++..+. +.........+....+|+.+..+|
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~-------------------------~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEEL-------------------------IQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHhcCccccchHHHHHHHHHHHHH
Confidence 3557888888999999999999999887542 000000000344567889999999
Q ss_pred hcCCChHHHHHHHhccCC-------C----CeeeHHHHHHHHHh--cCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHH-
Q 006580 191 GKLGVLYYAFGVFLNMEE-------L----DIISWNSLISGCFN--SGYGELALDQFYSMRYSGYSPDEY-TISIVINA- 255 (640)
Q Consensus 191 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~- 255 (640)
...|++++|...++...+ + ...++..+..++.. .+++++|+..|++..+. .|+.. .+..+..+
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIAS 182 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999988876541 1 12345544444544 45789999999998874 45544 33333333
Q ss_pred --HhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCC
Q 006580 256 --CTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSK----CNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYG 326 (640)
Q Consensus 256 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 326 (640)
+...++.++|.+.++..++... .+..++..+...+.. .|+.++|.+.+++... .+..++..+...|...|
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 4456788889999998888752 345556555555544 4667889988887643 45667888999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 327 FGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVK 406 (640)
Q Consensus 327 ~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 406 (640)
++++|...+++..+. .|+.......+..+ ......... ..............+..+.|...|+.
T Consensus 262 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~----------y~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 262 EPDKAIELLKKALEY--IPNNAYLHCQIGCC----------YRAKVFQVM----NLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHH----------HHHHHHHHH----HC------CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh--CCChHHHHHHHHHH----------HHHHHHHhh----hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998874 45433321111110 000000000 00000000111112335667777766
Q ss_pred CC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhhCCC
Q 006580 407 LD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI--TLAAVLL-ACNYGGFVDKGMLVFSAMKEEYGVM 480 (640)
Q Consensus 407 ~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~A~~~~~~~~~~~~~~ 480 (640)
.. ..+...+..+...+...|++++|++.|++..+....|... .+..+.. .....|++++|+..|++..+ +.
T Consensus 326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~ 402 (472)
T 4g1t_A 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---IN 402 (472)
T ss_dssp HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SC
T ss_pred HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cC
Confidence 55 3456788889999999999999999999999854333322 2222222 24578999999999998775 45
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
|+........ ..+.++++... .+.++.+|..+...+...|++++|++.|+++++.+|.+|.++..++
T Consensus 403 ~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 403 QKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred cccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 5544333222 23334444433 3447789999999999999999999999999999998777666554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=4.3e-14 Score=137.47 Aligned_cols=228 Identities=12% Similarity=0.030 Sum_probs=113.3
Q ss_pred eeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 006580 211 IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL 290 (640)
Q Consensus 211 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (640)
...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-------- 90 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA-------- 90 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH--------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH--------
Confidence 3445555666666666666666666665532 1233345555555555566666655555555543 12333
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH--------------hh
Q 006580 291 FSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL--------------SS 356 (640)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l--------------~~ 356 (640)
++..+...+...|++++|.+.++++.+.. |+.......+ ..
T Consensus 91 -----------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 91 -----------------------VHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred -----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 44444445555555555555555554431 2211111111 11
Q ss_pred --CCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHH
Q 006580 357 --IPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAE 430 (640)
Q Consensus 357 --~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 430 (640)
+.. |+.+.|...++.+.+.. +.+...+..+...|.+.|++++|...++++. ..+...|..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 333 56666666666555543 2344455555555555555555555555544 1234455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 431 TLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 431 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
|+..++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555431 22334455555555555555555555555443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=7.6e-15 Score=133.09 Aligned_cols=194 Identities=11% Similarity=-0.002 Sum_probs=159.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAV 453 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l 453 (640)
|+++..+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56777888899999999999999999998763 36778999999999999999999999999985 45 45688888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 006580 454 LLACNYG-----------GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWES 520 (640)
Q Consensus 454 l~~~~~~-----------~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 520 (640)
...+... |++++|+..+++..+. -+-+...+..+..++...|++++|++.|+++. . .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8899999 9999999999999874 23356788899999999999999999999987 5 78899999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+...+...|++++|...++++++.+|.++..+..++.++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988654
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=165.06 Aligned_cols=128 Identities=17% Similarity=0.185 Sum_probs=113.4
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006580 377 FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-------KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRIT 449 (640)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 449 (640)
......+|++||++||+.|++++|.++|.+|. .||+++||+||.+||+.|+.++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997753 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006580 450 LAAVLLACNYGGF-VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505 (640)
Q Consensus 450 ~~~ll~~~~~~~~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 505 (640)
|+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999997 57899999999998 9999999999998877776554444444
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=167.32 Aligned_cols=125 Identities=9% Similarity=0.064 Sum_probs=113.0
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccC-------CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcch
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME-------ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT 248 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t 248 (640)
...-..+|++||++||+.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997764 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCc-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 006580 249 ISIVINACTKLRNL-DKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDS 300 (640)
Q Consensus 249 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 300 (640)
|+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 99999999999985 78999999999999999999999998877665433333
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.1e-14 Score=131.14 Aligned_cols=220 Identities=9% Similarity=-0.033 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 006580 313 AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYA 392 (640)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 392 (640)
..|..+...+...|++++|+..|++..+.. .+...+..+..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~~~~~~ 49 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH------------------------------------KDITYLNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------------------------CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh------------------------------------ccHHHHHHHHHHHH
Confidence 456667777777777777777777766543 33445566777888
Q ss_pred hcCChHHHHHHHHhCCC--C-C-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006580 393 KTGSIDSSTEIFVKLDK--R-D-------LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 462 (640)
..|++++|...|.+..+ | + ...|..+...+...|++++|+..+++..+. .|+.. .+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhH
Confidence 88888888888887662 2 1 577888999999999999999999999984 55533 3556688
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 006580 463 VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 463 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
+++|...++.+... .+.+...+..+...+...|++++|.+.++++. .+.+..++..+...+...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999988763 33356678889999999999999999999987 444788999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 541 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+++.+|.++..|..++.+|.+.|++++|...+++..+..
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987754
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=2.5e-13 Score=137.81 Aligned_cols=375 Identities=10% Similarity=-0.053 Sum_probs=232.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCCh-
Q 006580 118 MISGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVL- 196 (640)
Q Consensus 118 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 196 (640)
+...+.+.|++++|+.+|++..+.| +...+..|...|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g------------------------------------~~~A~~~Lg~~y~~~g~~~ 52 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG------------------------------------YSEAQVGLADIQVGTRDPA 52 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------------------------------CCTGGGTCC----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC------------------------------------CHHHHHHHHHHHHccCCCC
Confidence 4455566677777777777765543 222233444555566777
Q ss_pred --HHHHHHHhccCCCCeeeHHHHHHHHHhcC-----ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCch---HHH
Q 006580 197 --YYAFGVFLNMEELDIISWNSLISGCFNSG-----YGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLD---KGK 266 (640)
Q Consensus 197 --~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~ 266 (640)
++|...|+...+.+...+..+...+...+ ++++|+..|++..+.|. ...+..+...+...+..+ .+.
T Consensus 53 d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 53 QIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp ------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 88999998887667777777777566655 67899999999988653 235666666666554433 344
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC----HHHHHHHHHhcCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHh
Q 006580 267 QVFALSVKVGFLSNSIVLSATIDLFSKCNR----LEDSVRLFEQLDRWDYAVINVMISTYGRYG---FGEVALELFQLML 339 (640)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~ 339 (640)
+.+......| +......|...|...+. .+.+..+++.....++..+..|...|...| +.++|++.|++..
T Consensus 130 ~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 130 QQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp HHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 5555555544 35566677777777774 455556666666667778888888888888 7888888888887
Q ss_pred hCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc----CChHHHHHHHHhCCCCChhHH
Q 006580 340 REDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT----GSIDSSTEIFVKLDKRDLVSW 415 (640)
Q Consensus 340 ~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~ 415 (640)
+.|.. +...+..|..+|... +++++|...|++....++..+
T Consensus 207 ~~g~~-----------------------------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~ 251 (452)
T 3e4b_A 207 SRGTV-----------------------------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASW 251 (452)
T ss_dssp HTTCS-----------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHH
T ss_pred HCCCH-----------------------------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 76522 222223344444333 577777777777663355666
Q ss_pred HHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhhCCCCChhHHH
Q 006580 416 NTIMMG-L--TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG-----FVDKGMLVFSAMKEEYGVMPGEEHYA 487 (640)
Q Consensus 416 ~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~A~~~~~~~~~~~~~~p~~~~~~ 487 (640)
..|... + ...+++++|++.|++..+.| +...+..+...|. .| ++++|+..|++.. +-+...+.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~ 322 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADY 322 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHH
Confidence 666666 3 45788999999999988876 5556666666665 44 8999999988765 34566777
Q ss_pred HHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 488 CIIDLLCQ----AGQLGKAIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 488 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
.|...|.. ..++++|.+.|++.....++.....|...|.. .+|.++|..+++++.+.+++........+...
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAP 402 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777766 34899999999887634455566677777654 45899999999999998775544444443333
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 006580 560 AMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~ 578 (640)
...++..+|..+.++-++.
T Consensus 403 ~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 403 LTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4456777788777766543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.4e-13 Score=128.65 Aligned_cols=237 Identities=12% Similarity=0.001 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCC--CCChhhHHHHHhh
Q 006580 281 SIVLSATIDLFSKCNRLEDSVRLFEQLDR--WDYAVINVMISTYGRYGFGEVALELFQLMLREDI--RPTEFTLSCVLSS 356 (640)
Q Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~~l~~ 356 (640)
...+..+...+...|++++|...|++..+ .+..+|..+...+...|++++|+..+++..+... .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45788899999999999999999988644 5677899999999999999999999999876321 11110
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CChhHHHHHHHHHHhCCChHHHHHH
Q 006580 357 IPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNGRAAETLDV 434 (640)
Q Consensus 357 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~ 434 (640)
.....+..+...|.+.|++++|...|++..+ |+. ..+...|++++|...
T Consensus 77 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 ----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHH
Confidence 0135567788888999999999999988773 442 346667889999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 006580 435 FEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--F 511 (640)
Q Consensus 435 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 511 (640)
++++... .|+ ...+..+...+...|++++|...+++..+. .+.+...+..+...+.+.|++++|.+.++++. .
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999884 454 457788888899999999999999999874 34467889999999999999999999999887 3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCChhHHHHHHHH
Q 006580 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQ------LPSPLPYSLLTQA 558 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 558 (640)
+.+...|..+...+...|++++|...++++++.. |.+...+..+..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4468899999999999999999999999999998 8777777766543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.4e-13 Score=130.07 Aligned_cols=185 Identities=10% Similarity=-0.051 Sum_probs=141.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
+...+..+...|...|++++|...|++.. ..+...+..+...+...|++++|+..++++.+. .|+.......+..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYL 153 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 44556667777888888888888887776 235778888999999999999999999999884 5665555555555
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCC
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG-----CSIWESILRASAIYGD 530 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~ 530 (640)
+...|++++|...++..... .+++...+ .++..+...++.++|.+.+++.. ..|+ ...+..+...+...|+
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 154 AEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 67779999999999887764 23444444 46777778888899999998876 2332 5788899999999999
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 531 VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 531 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
+++|...++++++.+|.+...+ +.++...|++++|++.+
T Consensus 231 ~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999999999999999775544 66788889999988776
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=5.1e-13 Score=124.42 Aligned_cols=197 Identities=6% Similarity=-0.098 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLAC 457 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 457 (640)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566778888999999999999999876 3467788999999999999999999999998853 34667888888999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 006580 458 NYGGFVDKGMLVFSAMKEEYGVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 458 ~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998762 3445 45678888999999999999999999876 344688999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...++++++..|.+...+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998765
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=6.8e-13 Score=121.04 Aligned_cols=200 Identities=11% Similarity=-0.007 Sum_probs=173.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVL 454 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 454 (640)
+.+...+..+...+...|++++|...|+++. ..+...|..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3345677888899999999999999999876 3467788999999999999999999999999853 44567888889
Q ss_pred HHHhcc-CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC
Q 006580 455 LACNYG-GFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGD 530 (640)
Q Consensus 455 ~~~~~~-~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 530 (640)
..+... |++++|...++.+.+. +..|+ ...+..+...+...|++++|.+.++++. ..| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 9999999999998872 33443 5678889999999999999999999876 344 68899999999999999
Q ss_pred hHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 531 VKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 531 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+++|...++++++..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 999999999999999999999999999987654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=4.3e-13 Score=126.57 Aligned_cols=242 Identities=12% Similarity=0.015 Sum_probs=129.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCCh
Q 006580 286 ATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPV 362 (640)
Q Consensus 286 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~ 362 (640)
.....+...|++++|+..|++..+ .+...|..+...+...|++++|+..+++..+.+..|+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------- 72 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA--------------- 72 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC---------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH---------------
Confidence 344444555555555555554432 23335555555566666666666666655542211110
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439 (640)
Q Consensus 363 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (640)
....+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.+++..
T Consensus 73 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 73 -----------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred -----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 11123344445555555555555555443 1234455555556666666666666666555
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC----C
Q 006580 440 EEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ---LGKAIDITSTMP----F 511 (640)
Q Consensus 440 ~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~ 511 (640)
+. .| +...+..+...+...+++++|...++++.+. .+.+...+..+..++...|+ +++|...++++. .
T Consensus 136 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 136 RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 53 23 2334444441222334666666666666543 12224455555555555555 555555554443 1
Q ss_pred CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 512 QPG------CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 512 ~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
.|+ ..+|..+...|...|++++|.+.++++++++|.++.++..+.......+
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 122 2467778888888999999999999999999999988888877665544
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=2e-13 Score=126.35 Aligned_cols=197 Identities=10% Similarity=0.027 Sum_probs=154.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566777888889999999998888763 367788888899999999999999999998852 3456788888889
Q ss_pred HhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLT 534 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 534 (640)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++. .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874 24467788889999999999999999999876 444788899999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 535 ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...++++++..|.++..+..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998755
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=7.6e-12 Score=118.00 Aligned_cols=224 Identities=9% Similarity=-0.106 Sum_probs=180.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 006580 311 DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEM 390 (640)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (640)
+..++..+...+...|++++|++.|++..+.+ +...+..+...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~a~~~lg~~ 47 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-------------------------------------ENSGCFNLGVL 47 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHH
Confidence 34456666667777777777777777766521 22334556667
Q ss_pred HHh----cCChHHHHHHHHhCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 006580 391 YAK----TGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQ----NGRAAETLDVFEELLEEGLPPDRITLAAVLLACNY-- 459 (640)
Q Consensus 391 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 459 (640)
|.. .+++++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +..++..+...|..
T Consensus 48 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 48 YYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 777 8888888888887663 467788888888888 999999999999998865 66778888888888
Q ss_pred --cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 006580 460 --GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ----AGQLGKAIDITSTMPFQPGCSIWESILRASAI----YG 529 (640)
Q Consensus 460 --~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 529 (640)
.+++++|+..+++..+. + +...+..+...|.. .+++++|.+.+++.....++..+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 89999999999998875 3 56677788888888 89999999999887633467788889999999 99
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 006580 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAM----RGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 580 (640)
++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 99999999999999876 6788899999999 9999999999999988774
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=1.4e-12 Score=114.74 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 006580 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489 (640)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 489 (640)
+...|..+...|...|++++|++.|++..+. .| +..++..+...+.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5667888899999999999999999999884 45 4567888888899999999999999988764 33456677778
Q ss_pred HHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-F-QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 567 (640)
...+...++++.|.+.+.+.. . +.+...+..+...+...|++++|++.++++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888899999999999998876 3 44788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 006580 568 IVRVKKVMRKNG 579 (640)
Q Consensus 568 a~~~~~~m~~~~ 579 (640)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999998764
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=4.9e-13 Score=123.73 Aligned_cols=213 Identities=11% Similarity=0.014 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------------------------------~~~~~~~~~la~~~ 67 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----------------------------------KEDAIPYINFANLL 67 (243)
T ss_dssp -------------------CCTTHHHHHTTC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----------------------------------cccHHHHHHHHHHH
Confidence 3445556666677777777777777766531 23345556677788
Q ss_pred HhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~ 468 (640)
.+.|++++|...|+++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|..
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888888776 3467788888999999999999999999998853 4466788888899999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 469 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
.++++.+. .+.+...+..+...+.+.|++++|.+.++++. .+.+..++..+...+...|++++|...++++++.+|
T Consensus 147 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99998874 34467788899999999999999999999876 444788999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhc
Q 006580 547 PSPLPYSLLTQAYAMR 562 (640)
Q Consensus 547 ~~~~~~~~l~~~~~~~ 562 (640)
.++..+..+..+....
T Consensus 225 ~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHH 240 (243)
T ss_dssp TCHHHHHHHTC-----
T ss_pred chHHHHHHHHHHHhhc
Confidence 9998888776554443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=3.3e-12 Score=118.93 Aligned_cols=206 Identities=14% Similarity=-0.005 Sum_probs=167.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
...|..+...+...|++++|...|+++.+.. +.+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------------------~~~~~~~~~la~~~ 81 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------------------------------PSSADAHAALAVVF 81 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------------------------CChHHHHHHHHHHH
Confidence 3456677777888888888888888776532 22344556777888
Q ss_pred HhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGM 467 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~ 467 (640)
...|++++|...|+++. ..+...+..+...+...|++++|+++++++...+..|+ ...+..+...+...|++++|.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88899999998888776 33667888889999999999999999999987444564 457778888999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006580 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545 (640)
Q Consensus 468 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 545 (640)
..++++.+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|.+.++++++..
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999998875 23457788899999999999999999999876 34477888999999999999999999999999999
Q ss_pred CCChhHHHH
Q 006580 546 LPSPLPYSL 554 (640)
Q Consensus 546 p~~~~~~~~ 554 (640)
|.++.....
T Consensus 240 p~~~~~~~~ 248 (252)
T 2ho1_A 240 PGSLEYQEF 248 (252)
T ss_dssp TTSHHHHHH
T ss_pred CCCHHHHHH
Confidence 998776543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=6.6e-12 Score=114.42 Aligned_cols=207 Identities=14% Similarity=0.018 Sum_probs=165.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~ 52 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-----------------------------------PKNELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------------------------ccchHHHHHHHHHH
Confidence 4456667777777777777777777766532 22344556677788
Q ss_pred HhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 006580 392 AKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQN-GRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKG 466 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A 466 (640)
...|++++|...|+++. ..+...+..+...+... |++++|+..++++.+.+..|+ ...+..+...+...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888776 33667888889999999 999999999999988434454 45778888899999999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006580 467 MLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQ-PGCSIWESILRASAIYGDVKLTENVAERMMD 543 (640)
Q Consensus 467 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 543 (640)
+..++++.+. .+.+...+..+...+.+.|++++|.+.++++. .+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999998874 23457788899999999999999999999876 34 5777888888888999999999999999999
Q ss_pred cCCCChhHHHHH
Q 006580 544 LQLPSPLPYSLL 555 (640)
Q Consensus 544 ~~p~~~~~~~~l 555 (640)
..|.++.....+
T Consensus 211 ~~p~~~~~~~~l 222 (225)
T 2vq2_A 211 NFPYSEELQTVL 222 (225)
T ss_dssp HCTTCHHHHHHH
T ss_pred hCCCCHHHHHHh
Confidence 999988776544
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=2.8e-12 Score=120.96 Aligned_cols=228 Identities=8% Similarity=-0.029 Sum_probs=179.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 006580 314 VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393 (640)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 393 (640)
.+......+...|++++|+..|++..+.. +.+...+..+...|..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------------------------------p~~~~~~~~l~~~~~~ 49 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-----------------------------------YNSPYIYNRRAVCYYE 49 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----------------------------------CCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------------------CCcHHHHHHHHHHHHH
Confidence 34445566677777777777777776542 2233455677788999
Q ss_pred cCChHHHHHHHHhCCC--CCh----hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006580 394 TGSIDSSTEIFVKLDK--RDL----VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~ 467 (640)
.|++++|...|++..+ ++. ..|..+...+...|++++|++.+++..+.. +.+..++..+...+...|++++|+
T Consensus 50 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999988763 222 348889999999999999999999999852 335578889999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 006580 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGD---VKLTENVAERMM 542 (640)
Q Consensus 468 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 542 (640)
..+++..+. .+.+...+..+...+...+++++|.+.++++. ..| +...+..+...+...|+ +++|...+++++
T Consensus 129 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 999988753 33456677777734445569999999999987 444 57888888888888888 888999999999
Q ss_pred hcC---CCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 543 DLQ---LPS-----PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 543 ~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.. |+. ...|..++..|...|++++|.+.++++.+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 884 432 2578899999999999999999999998865
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=1.2e-11 Score=125.39 Aligned_cols=340 Identities=7% Similarity=-0.042 Sum_probs=225.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 006580 216 SLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNL---DKGKQVFALSVKVGFLSNSIVLSATIDLFS 292 (640)
Q Consensus 216 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (640)
.+...+.+.|++++|+.+|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999998876 334445555566667777 8999999888755 4555666777555
Q ss_pred hcC-----CHHHHHHHHHhcCCC-ChhhHHHHHHHHHhCCChH---HHHHHHHHHhhCCCCCChhhHHHHHhhCCC-C--
Q 006580 293 KCN-----RLEDSVRLFEQLDRW-DYAVINVMISTYGRYGFGE---VALELFQLMLREDIRPTEFTLSCVLSSIPI-P-- 360 (640)
Q Consensus 293 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~-- 360 (640)
..+ +.++|..+|++..++ +...+..|...|...+..+ ++.+.+....+.|... ....+-..+.. +
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPE---AGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTT---HHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHH---HHHHHHHHHHcCCCc
Confidence 555 788999999887664 4557888888887766533 4555555555554322 22222222223 4
Q ss_pred --ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---ChHHHHHHHHhCCC---CChhHHHHHHHHHHhC----CCh
Q 006580 361 --PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTG---SIDSSTEIFVKLDK---RDLVSWNTIMMGLTQN----GRA 428 (640)
Q Consensus 361 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~ 428 (640)
+.+.+..++.... ..++..+..|..+|.+.| +.++|...|++..+ ++...+..+...|... +++
T Consensus 158 ~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 3444444443332 334447788888999999 89999999988763 3444446677777554 689
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-----ChH
Q 006580 429 AETLDVFEELLEEGLPPDRITLAAVLLA-C--NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG-----QLG 500 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~ 500 (640)
++|+..|++.. .| +...+..+... + ...+++++|+..|++..+. | +...+..|...|. .| +++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 99999999987 33 34455555554 3 5689999999999998875 4 6677778888887 55 999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChHHHHHHH
Q 006580 501 KAIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM----RGRWEAIVRVK 572 (640)
Q Consensus 501 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~ 572 (640)
+|.+.|++.. ..++..+..|...|.. ..++++|...++++.+.+ ++.....|+.+|.. ..+.++|..++
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999998 6688888888888776 349999999999998764 46678889888875 45899999999
Q ss_pred HHHHhCCCc
Q 006580 573 KVMRKNGIN 581 (640)
Q Consensus 573 ~~m~~~~~~ 581 (640)
++..+.|..
T Consensus 382 ~~A~~~g~~ 390 (452)
T 3e4b_A 382 QLAKAQDTP 390 (452)
T ss_dssp HHHHTTCCH
T ss_pred HHHHHCCCH
Confidence 999998853
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.2e-12 Score=128.49 Aligned_cols=229 Identities=11% Similarity=0.094 Sum_probs=185.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006580 312 YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMY 391 (640)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 391 (640)
...|+.+...+.+.|++++|+..+++..+. .| .+...++.+..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P---------------------------------~~~~a~~~~g~~l 141 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NA---------------------------------ANYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CT---------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Cc---------------------------------cCHHHHHHHHHHH
Confidence 345777777888888888888888888763 33 3344566777788
Q ss_pred HhcCC-hHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 006580 392 AKTGS-IDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGM 467 (640)
Q Consensus 392 ~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~ 467 (640)
...|+ +++|...|+++. ..+...|+.+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHH
Confidence 88886 999999998887 2367789999999999999999999999999852 335568888889999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChHHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHHcC--ChHHHHHH
Q 006580 468 LVFSAMKEEYGVMPGEEHYACIIDLLCQ-AGQLGKA-----IDITSTMP-FQP-GCSIWESILRASAIYG--DVKLTENV 537 (640)
Q Consensus 468 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~-~~~-~~~~~~~l~~~~~~~~--~~~~a~~~ 537 (640)
..++++.+. -+-+...|..+..++.+ .|..++| ++.++++. ..| +...|..+...+...| ++++|.+.
T Consensus 221 ~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 221 QYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 999999874 23457788899999988 6665777 47777766 455 7889999999998888 69999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcC---------ChHHHHHHHHHH-HhCC
Q 006580 538 AERMMDLQLPSPLPYSLLTQAYAMRG---------RWEAIVRVKKVM-RKNG 579 (640)
Q Consensus 538 ~~~~~~~~p~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~~~ 579 (640)
++++ +.+|+++.++..++++|.+.| .+++|+++++++ .+.+
T Consensus 299 ~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 299 LLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 9998 889999999999999999875 358999999998 5543
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=3.7e-12 Score=124.95 Aligned_cols=241 Identities=10% Similarity=0.063 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHhhCCCCCChhhHHHHHhhCC
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGF-GEVALELFQLMLREDIRPTEFTLSCVLSSIP 358 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~ 358 (640)
++..+..++.+.|++++|+..++++.+ .+..+|+.+...+...|+ +++|+..|++..+. .
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~-------------- 162 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--Q-------------- 162 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--C--------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--C--------------
Confidence 445555566666666666666665543 344566666667777775 77777777776653 2
Q ss_pred CCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHH
Q 006580 359 IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVF 435 (640)
Q Consensus 359 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 435 (640)
+.+...+..+..++.+.|++++|...|+++. ..+...|..+..++...|++++|+..+
T Consensus 163 -------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 163 -------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 2233445556666666777777777777665 236677888888888888888888888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhc-cCCHHHH-----HHHHHHhHHhhCCCCChhHHHHHHHHHHhcC--ChHHHHHHH
Q 006580 436 EELLEEGLPP-DRITLAAVLLACNY-GGFVDKG-----MLVFSAMKEEYGVMPGEEHYACIIDLLCQAG--QLGKAIDIT 506 (640)
Q Consensus 436 ~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~A-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~ 506 (640)
+++++. .| +...|+.+..++.. .|..++| +..+++.... -+-+...|..+..++...| ++++|++.+
T Consensus 224 ~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 224 DQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 888884 44 45677777777777 5554666 4777777653 2334567888888888877 688888888
Q ss_pred HhCCCCC-CHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HhcCCCChhHHHHHHHHHHhc
Q 006580 507 STMPFQP-GCSIWESILRASAIYG---------DVKLTENVAERM-MDLQLPSPLPYSLLTQAYAMR 562 (640)
Q Consensus 507 ~~~~~~~-~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 562 (640)
.++...| +...+..++..|...| ..++|+++++++ ++.+|.....|..++..+...
T Consensus 300 ~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 300 LDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8775344 6778888888888764 258999999999 899999999999888776644
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=3.7e-12 Score=115.26 Aligned_cols=192 Identities=13% Similarity=0.038 Sum_probs=95.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006580 278 LSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR---WDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVL 354 (640)
Q Consensus 278 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l 354 (640)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~-------- 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR-------- 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------
Confidence 34556666677777777777777777776544 34556777777777888888888887777663 232
Q ss_pred hhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-----------CChHHHHHHHHhCC--CC-ChhHHHHHHH
Q 006580 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT-----------GSIDSSTEIFVKLD--KR-DLVSWNTIMM 420 (640)
Q Consensus 355 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~--~~-~~~~~~~li~ 420 (640)
+...+..+..++.+. |++++|...|++.. .| +...|..+..
T Consensus 72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 223334444444444 45555555554443 12 3344444444
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 500 (640)
.+...|++++|+..|++..+.. .+...+..+..++...|++++|+..|++..+. -+.+...+..+..++.+.|+++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 5555555555555555554433 34444444444455555555555555544432 1223334444444444444444
Q ss_pred HHHHHHHh
Q 006580 501 KAIDITST 508 (640)
Q Consensus 501 ~A~~~~~~ 508 (640)
+|.+.+++
T Consensus 203 ~A~~~~~~ 210 (217)
T 2pl2_A 203 EAARAAAL 210 (217)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=1.4e-12 Score=133.05 Aligned_cols=192 Identities=9% Similarity=0.000 Sum_probs=169.1
Q ss_pred CCchHHHHHHHHHHHhcCCh-HHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSI-DSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAV 453 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 453 (640)
+.+...+..+...|...|++ ++|...|++.. .| +...|..+...|...|++++|++.|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34566777788888889999 99999998876 33 5778999999999999999999999999984 6887888889
Q ss_pred HHHHhcc---------CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhCC-CCC--
Q 006580 454 LLACNYG---------GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQA--------GQLGKAIDITSTMP-FQP-- 513 (640)
Q Consensus 454 l~~~~~~---------~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~-- 513 (640)
...+... |++++|+..+++..+. .+.+...|..+..+|... |++++|++.|+++. ..|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 9999999 9999999999999874 244577899999999998 99999999999987 445
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 006580 514 --GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 514 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 573 (640)
+...|..+...+...|++++|.+.++++++++|.++..+..++.++...|++++|.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999999999997543
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=3.5e-11 Score=113.38 Aligned_cols=228 Identities=7% Similarity=-0.073 Sum_probs=168.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006580 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDRW-DYAVINVMISTYGR----YGFGEVALELFQLMLREDIRPTEFTLSCVL 354 (640)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l 354 (640)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3445555666666667777777776665543 34456666666666 777777777777666543
Q ss_pred hhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCC-CChhHHHHHHHHHHh----C
Q 006580 355 SSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK----TGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQ----N 425 (640)
Q Consensus 355 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~ 425 (640)
++..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 22233445566666 7777777777776653 366777888888888 8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cC
Q 006580 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNY----GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ----AG 497 (640)
Q Consensus 426 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 497 (640)
+++++|++.|++..+.+ +...+..+...+.. .+++++|+..+++..+. + +...+..+...|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCc
Confidence 99999999999998865 45566677777776 89999999999988765 3 46778888888988 99
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhH
Q 006580 498 QLGKAIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
++++|++.+++.....+...+..+...|.. .+++++|...++++++.+|++...
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999887622347788888888888 899999999999999998865443
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=2.9e-12 Score=120.98 Aligned_cols=215 Identities=15% Similarity=0.027 Sum_probs=172.0
Q ss_pred CChHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGF---DSNAVVASSLMEMYAKTGSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLD 433 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 433 (640)
++++.|...++.+.+... +.+...+..+...+...|++++|...|+++. ..+...|..+...+...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 455555555555554321 1245667888999999999999999999887 3467899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 006580 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--F 511 (640)
Q Consensus 434 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 511 (640)
.|+++.+.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.. .
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999852 335678889999999999999999999999865 4555555555566677899999999997765 3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 512 QPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP----SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+++...+. ++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...++++.+..
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 44444444 677777888999999999999888663 36889999999999999999999999998765
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=4e-12 Score=127.62 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=51.8
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----Chhh
Q 006580 247 YTISIVINACTKLRNLDKGKQVFALSVKVGFLSN---SIVLSATIDLFSKCNRLEDSVRLFEQLDR-----W----DYAV 314 (640)
Q Consensus 247 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 314 (640)
..+......+...|++++|...++.+++.+.... ..++..+...|...|++++|...+++... . ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445556666777777777777777776642211 23455666666666666666666655421 0 1223
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHh
Q 006580 315 INVMISTYGRYGFGEVALELFQLML 339 (640)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~m~ 339 (640)
+..+...|...|++++|...+++..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.6e-12 Score=129.04 Aligned_cols=303 Identities=11% Similarity=-0.011 Sum_probs=196.7
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc-----chHHHHHHHHhccCCchHHHHHHHHHHHh----CCCC-ch
Q 006580 212 ISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDE-----YTISIVINACTKLRNLDKGKQVFALSVKV----GFLS-NS 281 (640)
Q Consensus 212 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 281 (640)
..+......+...|++++|...|++..+.+ |+. ..+..+...+...|+++.|...++.+++. +..| ..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345566778889999999999999988753 432 46777888888999999999999887654 2122 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHH
Q 006580 282 IVLSATIDLFSKCNRLEDSVRLFEQLDRW-----D----YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC 352 (640)
Q Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 352 (640)
.++..+...|...|++++|...+++..+. + ..++..+...|...|+...+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~------------------ 149 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP------------------ 149 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc------------------
Confidence 56778888999999999999988765321 0 00111222111111111100000
Q ss_pred HHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-------CC--ChhHHHHHHHHH
Q 006580 353 VLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD-------KR--DLVSWNTIMMGL 422 (640)
Q Consensus 353 ~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~ 422 (640)
... ...+.+... +++|...+.+.. .+ ...++..+...+
T Consensus 150 ----~~~~~~~~~a~~~----------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 150 ----QDVGEFPEEVRDA----------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp -------CCCCHHHHHH----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----chhhhhhhhHHHH----------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 000 111111111 333333333222 11 234677778888
Q ss_pred HhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHH
Q 006580 423 TQNGRAAETLDVFEELLEEGL-PPD----RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLL 493 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 493 (640)
...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 888888888888888775210 122 136777778888899999999988887653211112 45677888889
Q ss_pred HhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CChhHHHHHHHHH
Q 006580 494 CQAGQLGKAIDITSTMP----FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQL------PSPLPYSLLTQAY 559 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~ 559 (640)
...|++++|.+.+++.. ..++ ..++..+...+...|++++|...++++++..+ ....++..++.++
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 99999999999888765 1122 55788888999999999999999999988832 3356778888888
Q ss_pred HhcCChH
Q 006580 560 AMRGRWE 566 (640)
Q Consensus 560 ~~~g~~~ 566 (640)
...|+..
T Consensus 358 ~~~g~~~ 364 (406)
T 3sf4_A 358 MVLGLSY 364 (406)
T ss_dssp HHHHTTS
T ss_pred HHhhHhH
Confidence 8888764
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2e-12 Score=130.23 Aligned_cols=266 Identities=10% Similarity=0.000 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch----hhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHh
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDR--W-DY----AVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~ 355 (640)
.+..+...+...|++++|+..|++..+ + +. ..|..+...|...|++++|...+++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence 445566677788888888888877654 2 22 356677777777888888888777765420
Q ss_pred hCCCCChHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---------CChhHHHHHHHHHHhC
Q 006580 356 SIPIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK---------RDLVSWNTIMMGLTQN 425 (640)
Q Consensus 356 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~ 425 (640)
.+.+. +.....+..+...|...|++++|...|.+..+ ....++..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 00000 11234556677788888888888888877652 1234677788888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-
Q 006580 426 GR-----------------AAETLDVFEELLEE----GLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG- 482 (640)
Q Consensus 426 g~-----------------~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~- 482 (640)
|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888888876552 11222 236777788889999999999999987754211122
Q ss_pred ---hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----
Q 006580 483 ---EEHYACIIDLLCQAGQLGKAIDITSTMP-F---QP----GCSIWESILRASAIYGDVKLTENVAERMMDLQLP---- 547 (640)
Q Consensus 483 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---- 547 (640)
...+..+...|...|++++|.+.+++.. . .. ...++..+...+...|++++|...++++++..+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 2367888899999999999999998875 1 11 1567888899999999999999999999988442
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 548 --SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 548 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
....+..++.+|.+.|++++|...+++..+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2457889999999999999999999988764
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=9.3e-10 Score=115.31 Aligned_cols=214 Identities=8% Similarity=-0.017 Sum_probs=145.6
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHH-HHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 331 ALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGS-QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD 408 (640)
Q Consensus 331 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 408 (640)
+..+|++.... ..-....|......+.. |+.+.|. .+++..... +|.+...+-.++....+.|++++|..+|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44566666553 12233444444444444 7777785 888888764 35566667777888888888888888888776
Q ss_pred C-------------CC------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cC
Q 006580 409 K-------------RD------------LVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDRITLAAVLLACNY-GG 461 (640)
Q Consensus 409 ~-------------~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~~ 461 (640)
. |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 3 21 235777777777788888899999888875 2 1122333322222223 34
Q ss_pred CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHcCChHHHHH
Q 006580 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP----GCSIWESILRASAIYGDVKLTEN 536 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~ 536 (640)
+.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.. ..| ....|...+..-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5888999988888753 3455566777887788888999999998876 233 24578888888888899999999
Q ss_pred HHHHHHhcCCCCh
Q 006580 537 VAERMMDLQLPSP 549 (640)
Q Consensus 537 ~~~~~~~~~p~~~ 549 (640)
+.+++.+..|+++
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999988888764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=1.9e-11 Score=107.42 Aligned_cols=168 Identities=9% Similarity=0.012 Sum_probs=145.9
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhCC--C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006580 379 SNAVVASSLMEMYAKTGSIDSSTEIFVKLD--K-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455 (640)
Q Consensus 379 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 455 (640)
.++.+|..+...|.+.|++++|...|++.. . .++..|..+..+|...|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356788899999999999999999999887 3 467889999999999999999999999998852 334557777778
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKL 533 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 533 (640)
.+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++.. ..| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999998864 34457788899999999999999999999987 445 78899999999999999999
Q ss_pred HHHHHHHHHhcCCCCh
Q 006580 534 TENVAERMMDLQLPSP 549 (640)
Q Consensus 534 a~~~~~~~~~~~p~~~ 549 (640)
|.+.++++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=5.6e-12 Score=122.81 Aligned_cols=267 Identities=13% Similarity=0.045 Sum_probs=192.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHh
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDR--W-D----YAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLS 355 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~ 355 (640)
.+......+...|++++|...|+++.+ + + ...+..+...+...|++++|.+.+++..+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 344456677778888888888877643 2 2 2456677777777888888888777765420
Q ss_pred hCCCCChHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----CC----hhHHHHHHHHHHhC
Q 006580 356 SIPIPPVEHGSQFHSMAIKSGF-DSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-----RD----LVSWNTIMMGLTQN 425 (640)
Q Consensus 356 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~ 425 (640)
...+. +.....+..+...|...|++++|...+.+..+ ++ ..++..+...+...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 00111 11234556677888888888888888877652 22 33677788888888
Q ss_pred CC--------------------hHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCC
Q 006580 426 GR--------------------AAETLDVFEELLEE----GLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVM 480 (640)
Q Consensus 426 g~--------------------~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 480 (640)
|+ +++|.+.+++.... +..|. ..++..+...+...|++++|...+++..+...-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 88 89999888876542 11222 2367777888899999999999999876542111
Q ss_pred CC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-
Q 006580 481 PG----EEHYACIIDLLCQAGQLGKAIDITSTMP----FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLP- 547 (640)
Q Consensus 481 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 547 (640)
++ ...+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|++++|...++++++..+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 3377888899999999999999998875 1122 557788889999999999999999999988442
Q ss_pred -C----hhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 548 -S----PLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 548 -~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+ ..++..++.+|.+.|++++|...+++..+..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2 4578899999999999999999999988753
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.6e-09 Score=113.60 Aligned_cols=216 Identities=6% Similarity=-0.047 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHH-HHHHhCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 364 HGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSST-EIFVKLDK--R-DLVSWNTIMMGLTQNGRAAETLDVFEELL 439 (640)
Q Consensus 364 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (640)
.+..++++++.. ++.+..++-..+..+.+.|+.++|. .+|++... | +...|-..+...-+.|+++.|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345677777765 3567788888888888899999996 99988762 3 56667788888889999999999999998
Q ss_pred HCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-
Q 006580 440 EEGL---------PPD------------RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG- 497 (640)
Q Consensus 440 ~~g~---------~p~------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 497 (640)
.... .|+ ...|...+....+.|+.+.|..+|....+. .-.+....|...+..-.+.+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCC
Confidence 7310 142 235677777777889999999999998864 12223445554444445554
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 498 QLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP---SPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 498 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
+.+.|.++|+... .+.+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5899999999886 4457778888888888899999999999999999873 5567888888888899999999999
Q ss_pred HHHHhCCCc
Q 006580 573 KVMRKNGIN 581 (640)
Q Consensus 573 ~~m~~~~~~ 581 (640)
+++.+.-++
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 999886554
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1e-11 Score=131.83 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=143.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 006580 411 DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACI 489 (640)
Q Consensus 411 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 489 (640)
+...|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..+|.+.|++++|++.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3567888889999999999999999999884 565 468888889999999999999999988864 13346788999
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 006580 490 IDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 490 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 567 (640)
..+|.+.|++++|++.|+++. ..| +...|..+...+...|++++|++.|+++++++|+++..|..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999877 555 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 006580 568 IVRVKKVMRK 577 (640)
Q Consensus 568 a~~~~~~m~~ 577 (640)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=3.6e-11 Score=105.65 Aligned_cols=163 Identities=12% Similarity=0.053 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444555555566666666665555431 223445555566666666666666666666543 233455666666667
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006580 494 CQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV 571 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 571 (640)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776655 3446778888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 006580 572 KKVMRKNG 579 (640)
Q Consensus 572 ~~~m~~~~ 579 (640)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99887654
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=2.9e-11 Score=121.63 Aligned_cols=234 Identities=11% Similarity=-0.004 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCC-CChhhHHH
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDR---------WDYAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSC 352 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ 352 (640)
++..+..+|...|++++|...+++..+ ....++..+...|...|++++|...+++..+.... .+.
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 162 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----- 162 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-----
Confidence 344444445555555555554444321 12234566666777777777777777665542100 000
Q ss_pred HHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-----------------hHHHHHHHHhCCC-----C
Q 006580 353 VLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS-----------------IDSSTEIFVKLDK-----R 410 (640)
Q Consensus 353 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-----~ 410 (640)
+.....+..+...|...|+ +++|...+.+..+ .
T Consensus 163 -------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 163 -------------------------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 1112344556666777777 7777776665431 1
Q ss_pred ----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCC
Q 006580 411 ----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPD----RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMP 481 (640)
Q Consensus 411 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 481 (640)
....+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+...-..
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 234677788889999999999999988876311 112 13677788889999999999999988775421111
Q ss_pred C----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 482 G----EEHYACIIDLLCQAGQLGKAIDITSTMP-F---QPG----CSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 482 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
+ ...+..+...|...|++++|.+.+++.. . .++ ..++..+...+...|++++|...+++++++.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1 4577888899999999999999998875 1 112 44778889999999999999999999988855
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=1.1e-10 Score=112.11 Aligned_cols=213 Identities=9% Similarity=0.028 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHH-------hcCCh-------HHHHHHHHhCCC---C-ChhHHHHHHHHHHh
Q 006580 363 EHGSQFHSMAIKSGFDSNAVVASSLMEMYA-------KTGSI-------DSSTEIFVKLDK---R-DLVSWNTIMMGLTQ 424 (640)
Q Consensus 363 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 424 (640)
+.|..++++++... +.++..+..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34444555555432 445556666666554 35776 889999987653 3 55688899999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH-hcCChHH
Q 006580 425 NGRAAETLDVFEELLEEGLPPDR-I-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC-QAGQLGK 501 (640)
Q Consensus 425 ~g~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 501 (640)
.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45653 3 7888888888899999999999988763 2334445544443322 3699999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC-CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 502 AIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDL---QL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 502 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
|.++|++.. .+.+...|..++..+...|++++|..+|+++++. .| .+...|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999876 3347889999999999999999999999999996 44 36678889999999999999999999999
Q ss_pred HhCCC
Q 006580 576 RKNGI 580 (640)
Q Consensus 576 ~~~~~ 580 (640)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87654
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=3.5e-11 Score=117.13 Aligned_cols=234 Identities=11% Similarity=0.013 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCC-CChhhHHH
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDR---------WDYAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSC 352 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ 352 (640)
++..+...+...|++++|.+.+++..+ ....++..+...+...|++++|...+++..+.... ++...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 121 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--- 121 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---
Confidence 344444445555555555554444321 11234556666677777777777777665442100 11000
Q ss_pred HHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC--------------------hHHHHHHHHhCCC---
Q 006580 353 VLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS--------------------IDSSTEIFVKLDK--- 409 (640)
Q Consensus 353 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~--- 409 (640)
...++..+...|...|+ +++|...+++...
T Consensus 122 ---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 122 ---------------------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11233445555555666 6666666655431
Q ss_pred --C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhC
Q 006580 410 --R----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPD----RITLAAVLLACNYGGFVDKGMLVFSAMKEEYG 478 (640)
Q Consensus 410 --~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 478 (640)
+ ....+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++..+...
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 234677778888889999999998888775210 111 23677777888889999999999988765321
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 479 VMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP-F---QPG----CSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 479 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
-.++ ...+..+...+...|++++|.+.++++. . .++ ..++..+...+...|++++|...++++++..+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1122 4567778888999999999999988775 1 112 44778888999999999999999999998855
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=5.9e-11 Score=108.45 Aligned_cols=189 Identities=10% Similarity=-0.063 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC---C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD---K-RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVL 454 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 454 (640)
++..+......+...|++++|...|+... . ++...+..+..++...|++++|++.+++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 34555555566666666666666666554 1 44455555566666666666666666666653 3433 3555555
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHHHHHHHH
Q 006580 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGE-------EHYACIIDLLCQAGQLGKAIDITSTMP-FQPG---CSIWESILR 523 (640)
Q Consensus 455 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~ 523 (640)
..+...|++++|+..+++..+. .+.+. ..|..+...+...|++++|++.++++. ..|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666666666666666665543 11122 234555555556666666666665554 3443 334444444
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.+.. .+...++++..+.+.+...|... .....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 4433 23344455555555444444333 2233455699999999888754
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=6.7e-11 Score=117.66 Aligned_cols=230 Identities=12% Similarity=-0.038 Sum_probs=162.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhCCC-CCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006580 318 MISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396 (640)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 396 (640)
....+...|++++|+..|++..+.-. .++... ...++..+...|...|+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE------------------------------KAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH------------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH------------------------------HHHHHHHHHHHHHHcCC
Confidence 45566778888888888888765311 122111 12345667777888888
Q ss_pred hHHHHHHHHhCCC-----C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccC
Q 006580 397 IDSSTEIFVKLDK-----R-----DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPDR----ITLAAVLLACNYGG 461 (640)
Q Consensus 397 ~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~ 461 (640)
+++|...+.+..+ + ...+++.+...|...|++++|++.+++..+..- .++. .++..+...|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 8888777776551 1 134677888889999999999999888775210 1111 36777888889999
Q ss_pred CHHHHHHHHHHhHHhh---CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHHcCC
Q 006580 462 FVDKGMLVFSAMKEEY---GV-MPGEEHYACIIDLLCQAGQLGKAIDITSTMP------FQPG-CSIWESILRASAIYGD 530 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~~~ 530 (640)
++++|+..+++..+.. +. +....++..+...|.+.|++++|.+.+++.. ..|. ...+..+...+...|+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999998876621 22 2335578888899999999999999988875 1221 2335667777888888
Q ss_pred ---hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 531 ---VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 531 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+++|..++++. ...|.....+..++.+|...|++++|...+++..+.
T Consensus 319 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 319 EEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777776 333445567889999999999999999999988653
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=1.2e-10 Score=115.88 Aligned_cols=230 Identities=7% Similarity=-0.029 Sum_probs=172.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhC
Q 006580 287 TIDLFSKCNRLEDSVRLFEQLDR-----W----DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSI 357 (640)
Q Consensus 287 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~ 357 (640)
....+...|++++|...|++..+ + ...++..+...|...|++++|+..+.+..+.....+...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN-------- 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence 55677888999999998888754 2 234678888899999999999999888765211000000
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----CC----hhHHHHHHHHHHhCCCh
Q 006580 358 PIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-----RD----LVSWNTIMMGLTQNGRA 428 (640)
Q Consensus 358 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 428 (640)
+....+++.+...|...|++++|...|.+..+ ++ ..++..+...|...|++
T Consensus 181 --------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 181 --------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred --------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 01133557778888999999999988887662 11 24788899999999999
Q ss_pred HHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhC---CCCChhHHHHHHHHHHhcCC--
Q 006580 429 AETLDVFEELLEE----GLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYG---VMPGEEHYACIIDLLCQAGQ-- 498 (640)
Q Consensus 429 ~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~-- 498 (640)
++|++.+++..+. +..|+ ..++..+...+...|++++|...+++..+... .+.....+..+...+...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999998872 33243 45788889999999999999999998765421 11223345678888889998
Q ss_pred -hHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 499 -LGKAIDITSTMPFQP-GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 499 -~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
+++|+.++++....| ....+..+...|...|++++|...++++++.
T Consensus 321 ~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 321 AIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999987444 3457788999999999999999999999877
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=3.6e-11 Score=115.71 Aligned_cols=219 Identities=12% Similarity=0.072 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-------C----ChhHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKS-------GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-------R----DLVSWNTIMMG 421 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~ 421 (640)
|+++.|..+++.+.+. ..+.....+..+...|...|++++|...+++... + ....+..+...
T Consensus 41 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 120 (311)
T 3nf1_A 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666666666555542 2223344455555566666666666655555431 1 12345555555
Q ss_pred HHhCCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhC------CCCChhHHHH
Q 006580 422 LTQNGRAAETLDVFEELLEE------GLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYG------VMPGEEHYAC 488 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~------~~p~~~~~~~ 488 (640)
+...|++++|+..++++.+. +-.|+. ..+..+...+...|++++|+.+++++.+... .+.....+..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (311)
T 3nf1_A 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666666666666655542 112222 2445555555566666666666655544210 1111234555
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-C---------CCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-F---------QPG-------CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~---------~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
+...|...|++++|.+.++++. . .+. ...+..+...+...+.+.++...++++....|..+.+
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 5555666666666666555543 0 000 1111122222233344444555555555566777889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 552 YSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+..++.+|.+.|++++|.+++++..+.
T Consensus 281 ~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 281 LKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988753
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=1.1e-10 Score=119.24 Aligned_cols=178 Identities=7% Similarity=-0.058 Sum_probs=157.1
Q ss_pred hHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 006580 397 IDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRA-AETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFS 471 (640)
Q Consensus 397 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~ 471 (640)
++++...++... ..+...|..+...+...|++ ++|++.|++..+. .|+ ...+..+...|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556665544 34677889999999999999 9999999999985 454 6789999999999999999999999
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc--------CChH
Q 006580 472 AMKEEYGVMPGEEHYACIIDLLCQA---------GQLGKAIDITSTMP-FQP-GCSIWESILRASAIY--------GDVK 532 (640)
Q Consensus 472 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------~~~~ 532 (640)
+..+ +.|+...+..+..+|... |++++|++.++++. ..| +...|..+..+|... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9885 468888899999999999 99999999999987 444 788999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 533 LTENVAERMMDLQL---PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 533 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+|+..++++++++| .++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999998765
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=5e-10 Score=102.20 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=154.5
Q ss_pred ChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHH
Q 006580 346 TEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMG 421 (640)
Q Consensus 346 ~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~ 421 (640)
|...+...-..+.. |++++|...++.+.+...+++...+..+..++.+.|++++|...|++.. .| +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 33444444444555 9999999999999998754777777779999999999999999999887 33 56688899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 006580 422 LTQNGRAAETLDVFEELLEEGLPPD-R-------ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG---EEHYACII 490 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~ 490 (640)
+...|++++|++.+++..+. .|+ . ..|..+...+...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 99999999999999999984 444 3 3467777888899999999999999874 3565 56777788
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
.+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|.++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766543 223322 133444444443 334567899999999999999999988887766543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=3.7e-10 Score=99.09 Aligned_cols=167 Identities=12% Similarity=0.022 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 458 (640)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4556678889999999999999999873 367788899999999999999999999999852 445678888889999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTEN 536 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 536 (640)
..|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998874 34567788899999999999999999999876 44478899999999999999999999
Q ss_pred HHHHHHhcCCCChhH
Q 006580 537 VAERMMDLQLPSPLP 551 (640)
Q Consensus 537 ~~~~~~~~~p~~~~~ 551 (640)
.++++++..|.+...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998876543
No 78
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=2.1e-09 Score=102.99 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=133.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLDK--R-DLV-SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLL 455 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 455 (640)
+...+..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445667788888889999999999988773 4 343 78999999999999999999999999853 334445544333
Q ss_pred HH-hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC--CHHHHHHHHHHHHHc
Q 006580 456 AC-NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F---QP--GCSIWESILRASAIY 528 (640)
Q Consensus 456 ~~-~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~--~~~~~~~l~~~~~~~ 528 (640)
.. ...|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|+++. . .| ....|..++......
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 32 23699999999999988752 3467788999999999999999999999886 2 44 467899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCh
Q 006580 529 GDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 529 ~~~~~a~~~~~~~~~~~p~~~ 549 (640)
|+.+.|..+++++++..|++.
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHHccccc
Confidence 999999999999999999754
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1.7e-09 Score=107.24 Aligned_cols=229 Identities=12% Similarity=-0.047 Sum_probs=158.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhCCC-CCChhhHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 006580 318 MISTYGRYGFGEVALELFQLMLREDI-RPTEFTLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGS 396 (640)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 396 (640)
....+...|++++|+..|++..+... .++... ...++..+...|...|+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~a~~~~~lg~~y~~~~~ 156 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE------------------------------KAEFHFKVAEAYYHMKQ 156 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH------------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH------------------------------HHHHHHHHHHHHHHcCC
Confidence 34455677778888887777665311 112111 12345667777888888
Q ss_pred hHHHHHHHHhCCC-----C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccC
Q 006580 397 IDSSTEIFVKLDK-----R-----DLVSWNTIMMGLTQNGRAAETLDVFEELLEE----GLPPD-RITLAAVLLACNYGG 461 (640)
Q Consensus 397 ~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~ 461 (640)
++.|...+.+..+ + ...+++.+...|...|++++|++.+++..+. +-++. ..++..+...+...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 8888777766541 1 2346778888899999999999998887762 11111 246777888888999
Q ss_pred CHHHHHHHHHHhHHhh---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHHcCC-
Q 006580 462 FVDKGMLVFSAMKEEY---GVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP------FQPG-CSIWESILRASAIYGD- 530 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~~~- 530 (640)
++++|+..+++..+.. +.+....++..+...+.+.|++++|.+.+++.. ..|. ...+..+...+...++
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 9999999998877621 222235678888899999999999999988765 1222 3345666666667777
Q ss_pred --hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 531 --VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 531 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
+.+|...+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 317 ~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777762 22334456778899999999999999999988865
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=1e-08 Score=101.42 Aligned_cols=264 Identities=15% Similarity=0.024 Sum_probs=174.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC----CChh----hHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhh
Q 006580 285 SATIDLFSKCNRLEDSVRLFEQLDR----WDYA----VINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSS 356 (640)
Q Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~ 356 (640)
..+...+...|++++|...+++... .+.. +++.+...+...|++++|...+++..+...
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------- 84 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR------------- 84 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-------------
Confidence 3344455666777777776665422 1111 344455556666677776666666543210
Q ss_pred CCCCChHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-ChhHHHHHHHHHHh
Q 006580 357 IPIPPVEHGSQFHSMAIKSGFD-SNAVVASSLMEMYAKTGSIDSSTEIFVKLDK----------R-DLVSWNTIMMGLTQ 424 (640)
Q Consensus 357 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~ 424 (640)
+.+.+ .....+..+...+...|++++|...+++... | ....+..+...+..
T Consensus 85 -----------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 85 -----------------QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred -----------------hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 00100 0112345567778888898888888876651 1 12355667788899
Q ss_pred CCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHh
Q 006580 425 NGRAAETLDVFEELLEEGLP--P--DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA-----CIIDLLCQ 495 (640)
Q Consensus 425 ~g~~~~a~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~ 495 (640)
.|++++|...+++....... + ...++..+...+...|++++|...+++.............+. ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 99999999999988873211 1 234677778888899999999999998875422111111222 23345778
Q ss_pred cCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----C-hhHHHHHHHHHHhcC
Q 006580 496 AGQLGKAIDITSTMP-FQPG-----CSIWESILRASAIYGDVKLTENVAERMMDLQLP-----S-PLPYSLLTQAYAMRG 563 (640)
Q Consensus 496 ~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g 563 (640)
.|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+. . ...+..++.++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 999999999999886 2221 335677888899999999999999999877331 1 236778889999999
Q ss_pred ChHHHHHHHHHHHhC
Q 006580 564 RWEAIVRVKKVMRKN 578 (640)
Q Consensus 564 ~~~~a~~~~~~m~~~ 578 (640)
++++|...+++....
T Consensus 308 ~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 308 RKSDAQRVLLDALKL 322 (373)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888654
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=4.6e-11 Score=114.93 Aligned_cols=241 Identities=13% Similarity=0.068 Sum_probs=157.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChh
Q 006580 280 NSIVLSATIDLFSKCNRLEDSVRLFEQLDR--------W---DYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEF 348 (640)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 348 (640)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 445677888888888999988888887654 1 23456777788888888888888888766420
Q ss_pred hHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-ChhHHHH
Q 006580 349 TLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK----------R-DLVSWNT 417 (640)
Q Consensus 349 t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~ 417 (640)
........+.....+..+...|...|++++|...|++..+ + ....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 0000000122344566677788888888888888876652 1 2346778
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhh------CCCCCh-
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEE------GLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEY------GVMPGE- 483 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~p~~- 483 (640)
+...+...|++++|+++++++.+. +..|+. .++..+...+...|++++|...++++.+.. ...+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 888899999999999999988774 223433 467788888999999999999999887531 111111
Q ss_pred ------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 484 ------EHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 484 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
..+..+...+...+.+.++...+.... ..| +..++..+...|...|++++|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122223333444555556666666655 334 4668899999999999999999999999988664
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.8e-09 Score=100.79 Aligned_cols=203 Identities=11% Similarity=-0.026 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDK--R-D---LVSWNTIMMGLTQNGRAAETLDVFEELLEEGL-PPD-RITLAA 452 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 452 (640)
...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666665542 2 2 33455555556666666666666666655311 111 223444
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 006580 453 VLLACNY--------GGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILR 523 (640)
Q Consensus 453 ll~~~~~--------~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 523 (640)
+..++.. .|++++|+..|+++.+. .|+ ......+.......++. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444544 55566666666655543 122 11111111100000000 112356788
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCceeeEE
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPS---PLPYSLLTQAYAMR----------GRWEAIVRVKKVMRKNGINKVTGCSWIG 590 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 590 (640)
.+...|++++|+..++++++..|.+ +..+..++.+|... |++++|...++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999874 45888999999877 999999999999987643
Q ss_pred ecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 006580 591 IKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624 (640)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 624 (640)
.+|...+....+..+...+++
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777664
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=4.5e-09 Score=104.13 Aligned_cols=230 Identities=7% Similarity=-0.029 Sum_probs=166.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCC-CChhhHHHHHh
Q 006580 286 ATIDLFSKCNRLEDSVRLFEQLDR-----WD----YAVINVMISTYGRYGFGEVALELFQLMLREDIR-PTEFTLSCVLS 355 (640)
Q Consensus 286 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~~l~ 355 (640)
.....+...|++++|...|++..+ ++ ..++..+...|...|+++.|...+.+..+.... ++..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~------- 178 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS------- 178 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH-------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch-------
Confidence 345566778888888888887643 22 336777888899999999999988887652110 0000
Q ss_pred hCCCCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----CC----hhHHHHHHHHHHhCC
Q 006580 356 SIPIPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-----RD----LVSWNTIMMGLTQNG 426 (640)
Q Consensus 356 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 426 (640)
+....+++.+...|...|++++|...|.+..+ ++ ..++..+...|...|
T Consensus 179 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 179 ----------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00133456677888888888888888877652 12 346778888999999
Q ss_pred ChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhcCC-
Q 006580 427 RAAETLDVFEELLEE----GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG---EEHYACIIDLLCQAGQ- 498 (640)
Q Consensus 427 ~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~- 498 (640)
++++|++.+++..+. +.+....++..+...+.+.|++++|...+++..+...-.++ ...+..+...+...++
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 999999999988871 22223567888888999999999999999998775222122 3356666677777888
Q ss_pred --hHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 499 --LGKAIDITSTMPFQP-GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 499 --~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
+.+|+..+++....| ....+..+...|...|++++|...++++++.
T Consensus 317 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 317 RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999866333 3446778889999999999999999998765
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=6.9e-10 Score=104.85 Aligned_cols=219 Identities=13% Similarity=0.112 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-ChhHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKS-------GFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK----------R-DLVSWNTIMMG 421 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~ 421 (640)
|+++.|...+++..+. ..+....++..+...|...|++++|...|++..+ | ...++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 6777777777666652 2233466778888888999999999888877651 1 24567888888
Q ss_pred HHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhh------CCCCChhHHHH
Q 006580 422 LTQNGRAAETLDVFEELLEE------GLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEY------GVMPGEEHYAC 488 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~p~~~~~~~ 488 (640)
|...|++++|++.+++.... .-.|+ ..++..+...+...|++++|...+++..+.. ..+.....+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 88999999999998888763 11233 3567778888888999999999988876531 01223456778
Q ss_pred HHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhcCCCChhH
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP----------FQP-GCSIWESILRASAIYG------DVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
+...|.+.|++++|.+.++++. ..+ ....|..+...+...+ .+..+...++......|..+..
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888888999999988887764 122 2223333333333322 2333444444433344566778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 552 YSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 552 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+..++.+|...|++++|..++++..+.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988753
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=2.8e-09 Score=87.73 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=88.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 006580 450 LAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAI 527 (640)
Q Consensus 450 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 527 (640)
+..+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555442 1 2234455555556666666666666666554 23356677777888888
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 528 YGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 528 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.|++++|...++++++..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888999999998888887654
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=1.4e-09 Score=115.49 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=145.4
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006580 378 DSNAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAV 453 (640)
Q Consensus 378 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 453 (640)
|.+...++.|..+|.+.|++++|...|++.. .| +...|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4456778999999999999999999999887 34 6789999999999999999999999999984 565 5689999
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCh
Q 006580 454 LLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDV 531 (640)
Q Consensus 454 l~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 531 (640)
..++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|+++. ..| +...+..+...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999998864 23357789999999999999999999999987 566 688999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 006580 532 KLTENVAERMMDLQL 546 (640)
Q Consensus 532 ~~a~~~~~~~~~~~p 546 (640)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999988743
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.1e-08 Score=97.12 Aligned_cols=172 Identities=9% Similarity=-0.077 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CC----hhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC------
Q 006580 383 VASSLMEMYAKTGSIDSSTEIFVKLDK-----RD----LVSWNTIMMGLTQN-GRAAETLDVFEELLEEGLPPD------ 446 (640)
Q Consensus 383 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~------ 446 (640)
.++.+..+|.+.|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 445566666777777777666665541 11 34677788888885 8888888888888762 121
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH---
Q 006580 447 -RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-----EHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCS--- 516 (640)
Q Consensus 447 -~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~--- 516 (640)
..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...+++.. ..|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2457777888888888888888888887641111111 156677778888888888888888876 444321
Q ss_pred ---HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 517 ---IWESILRASA--IYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 517 ---~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
.+..++.++. ..+++++|+..|++++.++|.+...+..+-
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 3444555554 345788888888888777776554444443
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=1.1e-08 Score=93.00 Aligned_cols=180 Identities=13% Similarity=0.040 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 006580 382 VVASSLMEMYAKTGSIDSSTEIFVKLDK--RD----LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI----TLA 451 (640)
Q Consensus 382 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~ 451 (640)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3344455666777777777777777652 32 235666667777777777777777777763 23321 233
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 006580 452 AVLLACNY------------------GGFVDKGMLVFSAMKEEYGVMPGE-EHYACIIDLLCQAGQLGKAIDITSTMPFQ 512 (640)
Q Consensus 452 ~ll~~~~~------------------~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 512 (640)
.+..++.. .|++++|+..|+++.+. .|+. ..+....... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH---------
Confidence 33333332 34555555555555542 2221 1111111000 000000
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006580 513 PGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP---LPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 581 (640)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01113456678899999999999999999999876 56889999999999999999999999887653
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=3.4e-10 Score=95.30 Aligned_cols=140 Identities=12% Similarity=-0.023 Sum_probs=98.8
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL 499 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 499 (640)
.+...|++++|++.+++... ..|+. ..+..+...|.+.|++++|++.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34455667777777766654 23333 24455666777777777777777777653 233466777777777777888
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 500 GKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTEN-VAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
++|+..|+++. ..| ++..|..+...+...|++++|.+ .++++++++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88887777766 455 67788888888888888876554 4688899999998888888888887775
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=7.1e-08 Score=95.29 Aligned_cols=121 Identities=8% Similarity=-0.105 Sum_probs=52.4
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCcc----hHHHHHHHHhccCCchHHHHHHHHHHHhCCC-Cc----hhHHHHHHHH
Q 006580 220 GCFNSGYGELALDQFYSMRYSGYSPDEY----TISIVINACTKLRNLDKGKQVFALSVKVGFL-SN----SIVLSATIDL 290 (640)
Q Consensus 220 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~ 290 (640)
.+...|++++|...+++........+.. ++..+...+...|+++.|...++...+.... .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344555555555555544422111111 2233334444455555555555544432110 01 1123344445
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 006580 291 FSKCNRLEDSVRLFEQLDR-------W----DYAVINVMISTYGRYGFGEVALELFQLMLR 340 (640)
Q Consensus 291 ~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 340 (640)
+...|++++|...+++... + ....+..+...+...|++++|...+++..+
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555544321 0 011233444555555555555555555443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=8.9e-09 Score=96.03 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=136.6
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----hhHHHHHHH
Q 006580 350 LSCVLSSIPIPPVEHGSQFHSMAIKSGFDSN---AVVASSLMEMYAKTGSIDSSTEIFVKLDK--RD----LVSWNTIMM 420 (640)
Q Consensus 350 ~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~ 420 (640)
|......+..|+++.|...++.+.+.. |.+ ...+..+..+|.+.|++++|...|++..+ |+ ...+..+..
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 333333333499999999999998865 223 56778889999999999999999999873 32 346777788
Q ss_pred HHHh--------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 421 GLTQ--------NGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 421 ~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
++.. .|++++|+..|++..+. .|+.. .... ...+..+... -...+..+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~~~la~ 156 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARKQYEAAR 156 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHHHHHHHH
Confidence 8888 99999999999999984 45432 2211 1111111111 0122556677
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCChh---HHH
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIY----------GDVKLTENVAERMMDLQLPSPL---PYS 553 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~ 553 (640)
.|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|...++++++..|+++. ...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 236 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEE 236 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 8888888888888888775 3332 45677777777765 8899999999999999998864 344
Q ss_pred HHHHHHHhcCChHH
Q 006580 554 LLTQAYAMRGRWEA 567 (640)
Q Consensus 554 ~l~~~~~~~g~~~~ 567 (640)
.+..++...|++++
T Consensus 237 ~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 237 LYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhh
Confidence 55555555555443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=3.9e-09 Score=100.22 Aligned_cols=199 Identities=12% Similarity=0.012 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-------C--ChhHHHHHHHHHHhCCChHHHH
Q 006580 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-------R--DLVSWNTIMMGLTQNGRAAETL 432 (640)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~ 432 (640)
++.|...+..+ ...|...|++++|...|.+... + ...+|+.+..+|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666665554 4567888999999988877652 1 1458889999999999999999
Q ss_pred HHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHH
Q 006580 433 DVFEELLEEGL---PPD--RITLAAVLLACNYG-GFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKA 502 (640)
Q Consensus 433 ~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 502 (640)
..+++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99998876211 111 34788888889986 9999999999988764211111 35688889999999999999
Q ss_pred HHHHHhCC-CCCCH--------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh-----HHHHHHHHHH--hcCChH
Q 006580 503 IDITSTMP-FQPGC--------SIWESILRASAIYGDVKLTENVAERMMDLQLPSPL-----PYSLLTQAYA--MRGRWE 566 (640)
Q Consensus 503 ~~~~~~~~-~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~~ 566 (640)
+..+++.. ..|+. ..|..+...+...|++++|...++++++++|.... .+..++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999876 33321 25777888899999999999999999999886544 3445566664 456788
Q ss_pred HHHHHHHHH
Q 006580 567 AIVRVKKVM 575 (640)
Q Consensus 567 ~a~~~~~~m 575 (640)
+|+..++.+
T Consensus 258 ~A~~~~~~~ 266 (292)
T 1qqe_A 258 EHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhccC
Confidence 877777543
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=1.3e-08 Score=96.29 Aligned_cols=174 Identities=8% Similarity=-0.034 Sum_probs=138.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhh
Q 006580 399 SSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEY 477 (640)
Q Consensus 399 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 477 (640)
.....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444444445566777788888999999999999999884 45 4567888888999999999999999988653
Q ss_pred CCCCChhHHHHH-HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--hhHH
Q 006580 478 GVMPGEEHYACI-IDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS--PLPY 552 (640)
Q Consensus 478 ~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 552 (640)
.|+....... ...+.+.++.++|.+.+++.. ..| +...+..+...+...|++++|...++++++.+|.+ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 4554433332 233667778888888888876 444 78899999999999999999999999999999977 8899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999998887653
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=4.9e-08 Score=90.58 Aligned_cols=179 Identities=11% Similarity=0.058 Sum_probs=114.3
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 367 QFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-----RDLVSWNTIMMGLTQNGRAAETLDVFEELLEE 441 (640)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (640)
..++.+...+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 3344433333 33344445667777788888888888877642 2455666777788888888888888888877
Q ss_pred CCCC-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 006580 442 GLPP-----DRITLAAVLLAC--NY--GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F 511 (640)
Q Consensus 442 g~~p-----~~~~~~~ll~~~--~~--~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 511 (640)
..| +..+...+..++ .. .+++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+. .
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466 355555555552 22 23788888888887653 3443333344447778888888888876543 1
Q ss_pred ----------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 006580 512 ----------QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553 (640)
Q Consensus 512 ----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 553 (640)
.| |+.++-.++......|+ +|.++++++.+..|+++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 14 55566556555555666 777888888888887765543
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=1.3e-08 Score=83.67 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677778888888888888888888753 335567777778888888999999988888764 234566777888888
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 494 CQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 89999999998888876 3446778888899999999999999999999988775
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=9.7e-09 Score=109.64 Aligned_cols=169 Identities=10% Similarity=-0.087 Sum_probs=125.1
Q ss_pred HhcCChHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006580 392 AKTGSIDSSTEIFVKLD-----------KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 460 (640)
...|++++|.+.+++.. ..+...+..+..++...|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56777777777777664 2355677777778888888888888888888742 23445777777778888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 006580 461 GFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVA 538 (640)
Q Consensus 461 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 538 (640)
|++++|+..|++..+. .+-+...+..+..++.+.|++++ ++.|+++. ..| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887764 23345677778888888888888 88887766 444 6778888888888888888888888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 539 ERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 539 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
+++++++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888876555
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=1.6e-09 Score=91.19 Aligned_cols=124 Identities=7% Similarity=-0.110 Sum_probs=103.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 006580 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYG 529 (640)
Q Consensus 453 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 529 (640)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|+++. ..| ++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677889999999987653 2333 4456678999999999999999999987 555 7889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH-HHHHHhCC
Q 006580 530 DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRV-KKVMRKNG 579 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~ 579 (640)
++++|+..++++++++|.++.+|..++.+|.+.|++++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999877664 58777643
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=3.8e-08 Score=91.28 Aligned_cols=176 Identities=10% Similarity=0.039 Sum_probs=138.2
Q ss_pred HHHHHHhCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 400 STEIFVKLD---KRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 400 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
|...|++.. .++...+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 667777665 3455666788889999999999999999987765323 445788888999999999999999999976
Q ss_pred hhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Q 006580 476 EYGVMP-----GEEHYACIIDL--LCQAG--QLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDL- 544 (640)
Q Consensus 476 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 544 (640)
. .| +..+...|..+ ....| ++.+|..+|+++. ..|+..+-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 56 35556666655 33334 9999999999987 4566444445555889999999999999988876
Q ss_pred ---------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 545 ---------QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 545 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+|.++.++.+++.+....|+ +|.++++++.+..+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 48899999888888888887 89999999998653
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=3.2e-09 Score=100.23 Aligned_cols=223 Identities=11% Similarity=0.039 Sum_probs=152.9
Q ss_pred HHhCCChHHHHHHHHHHhhC-----C-CCC-ChhhHHHHHhhCCC-CChHHHHHHHHHHHHh------CC-CCchHHHHH
Q 006580 322 YGRYGFGEVALELFQLMLRE-----D-IRP-TEFTLSCVLSSIPI-PPVEHGSQFHSMAIKS------GF-DSNAVVASS 386 (640)
Q Consensus 322 ~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 386 (640)
....|++++|+..|++..+. + -.| ....+..+-..+.. |+++.|...+..+.+. +- +.....+..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567778888777776552 1 123 23445555555566 9999999999888865 22 334667888
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDK-------R----DLVSWNTIMMGLTQNGRAAETLDVFEELLEE------GLPPD-RI 448 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~ 448 (640)
+...|...|++++|...|.+... + ...++..+...+...|++++|+..+++..+. +-.|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999988762 1 2457888899999999999999999999874 11343 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhh------CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCC-
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEY------GVMPG-EEHYACIIDLLCQAG------QLGKAIDITSTMP-FQP- 513 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~~- 513 (640)
++..+...+...|++++|..++++..+.. ...+. ...+..+...+...+ .+.++...++... ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 78888899999999999999999987631 11222 233444443333333 2444555555544 223
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
...++..+...|...|++++|...++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3557888999999999999999999998875
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=8.5e-08 Score=85.95 Aligned_cols=162 Identities=10% Similarity=-0.056 Sum_probs=133.4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHHhhCCCCChhH
Q 006580 410 RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG----FVDKGMLVFSAMKEEYGVMPGEEH 485 (640)
Q Consensus 410 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~A~~~~~~~~~~~~~~p~~~~ 485 (640)
.++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|+..|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466777778888888899999999999988865 55666677777777 6 899999999988664 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhHHH
Q 006580 486 YACIIDLLCQ----AGQLGKAIDITSTMP-FQPG---CSIWESILRASAI----YGDVKLTENVAERMMDLQLPSPLPYS 553 (640)
Q Consensus 486 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 553 (640)
+..|...|.. .+++++|++.|++.. ..|. +..+..|...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 789999999999987 4443 7888899999988 78999999999999998 66777899
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 006580 554 LLTQAYAMR-G-----RWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 554 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 580 (640)
.|+.+|... | ++++|..++++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999988874
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.8e-08 Score=105.70 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=124.6
Q ss_pred cCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 006580 394 TGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVF 470 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 470 (640)
.|++++|...|++..+ .+...|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998873 357788999999999999999999999999852 334568888889999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcC
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIY---GDVKLTENVAERMMDLQ 545 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 545 (640)
++..+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998874 23457788999999999999999999999986 444 688899999999999 99999999999999999
Q ss_pred CCChhHHHHHH
Q 006580 546 LPSPLPYSLLT 556 (640)
Q Consensus 546 p~~~~~~~~l~ 556 (640)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=9.4e-09 Score=89.25 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=99.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HH
Q 006580 417 TIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL-LC 494 (640)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 494 (640)
.+...+...|++++|+..|++..+. .| +...+..+...+...|++++|+..++..... .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 3444455555566665555555442 22 2334555555555566666666666555432 2222222211111 11
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcCChHHHHH
Q 006580 495 QAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS--PLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
..+...+|.+.+++.. ..| +...+..+...+...|++++|...++++++.+|.. +..+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 1122233556666654 345 68889999999999999999999999999999854 6689999999999999999999
Q ss_pred HHHHHHh
Q 006580 571 VKKVMRK 577 (640)
Q Consensus 571 ~~~~m~~ 577 (640)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=1.2e-08 Score=85.25 Aligned_cols=97 Identities=6% Similarity=-0.073 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+..+...+.+.|++++|++.|+++. ..| ++..|..+..++...|++++|+..|+++++++|.++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4467777788888999999999998887 455 78899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 006580 561 MRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~ 579 (640)
+.|++++|...+++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998865
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=7.7e-09 Score=86.60 Aligned_cols=98 Identities=8% Similarity=-0.017 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
+...+..+...+.+.|++++|+..|+++. ..| +...|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34466677888889999999999998876 444 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 006580 560 AMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|++++|...+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999988754
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=1e-07 Score=99.92 Aligned_cols=152 Identities=12% Similarity=-0.014 Sum_probs=98.9
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 006580 425 NGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503 (640)
Q Consensus 425 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 503 (640)
.|++++|++.+++..+. .| +...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 36777788888777763 34 3456777777777788888888888877652 2334667777777888888888888
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHhC
Q 006580 504 DITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR---GRWEAIVRVKKVMRKN 578 (640)
Q Consensus 504 ~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 578 (640)
+.+++.. ..| +...+..+...+...|++++|.+.++++++.+|.++..+..++.++... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8887765 333 5677777888888888888888888888888888888888888888888 8888888877777655
Q ss_pred CC
Q 006580 579 GI 580 (640)
Q Consensus 579 ~~ 580 (640)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=3.5e-08 Score=79.92 Aligned_cols=107 Identities=7% Similarity=-0.072 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASA 526 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 526 (640)
.+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444455555556666666665555542 12334455555555555555555555555544 222 4555666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
..|++++|.+.++++++++|.++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6666666666666666666666655555544
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.3e-08 Score=108.61 Aligned_cols=153 Identities=12% Similarity=-0.036 Sum_probs=134.5
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 006580 423 TQNGRAAETLDVFEELL--------EEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 494 (640)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|+..++++.+. -+.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 42 1334567888889999999999999999999874 2346778899999999
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006580 495 QAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVK 572 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 572 (640)
..|++++|++.|+++. ..| +...|..+...+...|++++ ++.|+++++.+|.++..|..++.+|.+.|++++|+..+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987 555 67899999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 006580 573 KVMRKNG 579 (640)
Q Consensus 573 ~~m~~~~ 579 (640)
++..+.+
T Consensus 558 ~~al~l~ 564 (681)
T 2pzi_A 558 DEVPPTS 564 (681)
T ss_dssp HTSCTTS
T ss_pred HhhcccC
Confidence 8776544
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=9.6e-08 Score=85.77 Aligned_cols=128 Identities=11% Similarity=-0.083 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLC 494 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 494 (640)
+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|+..+++..+. .+.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 344455555666666666666554 2445555555556666666666666666655543 1223445555555555
Q ss_pred hcCChHHHHHHHHhCC-CCC-CH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 495 QAGQLGKAIDITSTMP-FQP-GC----------------SIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 495 ~~g~~~~A~~~~~~~~-~~~-~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
..|++++|.+.++++. ..| +. ..+..+...+...|++++|...++++++..|.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 5555555555555543 111 11 445555555555555555555555555555543
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=1.1e-07 Score=84.91 Aligned_cols=156 Identities=8% Similarity=0.010 Sum_probs=110.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--C-ChhHHHH----------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-CH
Q 006580 388 MEMYAKTGSIDSSTEIFVKLDK--R-DLVSWNT----------------IMMGLTQNGRAAETLDVFEELLEEGLPP-DR 447 (640)
Q Consensus 388 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~ 447 (640)
...+...|++++|...|+...+ | +...|.. +..+|.+.|++++|+..|++..+. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 3445566777777777776652 2 2334444 788888999999999999999884 45 45
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhCCCCCCHH--HHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ--LGKAIDITSTMPFQPGCS--IWESILR 523 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~--~~~~l~~ 523 (640)
..+..+...+...|++++|+..|++..+. -+.+...+..+...|...|+ .+.+...+.... .|++. .+.....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 67888888899999999999999988864 23356678888887766553 445666666665 44433 3444566
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
++...|++++|+..+++++++.|.+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6677889999999999999998864
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=4.6e-08 Score=79.19 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=90.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 479 VMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 479 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
+.|+ ...+......|.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 3467778899999999999999999987 445 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 006580 556 TQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.+|...|++++|.+.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998754
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=9.4e-07 Score=83.75 Aligned_cols=161 Identities=11% Similarity=-0.022 Sum_probs=123.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhHHH
Q 006580 417 TIMMGLTQNGRAAETLDVFEELLEEG-LPPDRI----TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEHYA 487 (640)
Q Consensus 417 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~ 487 (640)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..+++..+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988742 122321 2334566677788999999999998874122223 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------hhHH
Q 006580 488 CIIDLLCQAGQLGKAIDITSTMP-----FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPS------PLPY 552 (640)
Q Consensus 488 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 552 (640)
.+...|...|++++|+..++++. .+.+ ..++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999988875 2122 3478899999999999999999999999884322 6789
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 006580 553 SLLTQAYAMRGR-WEAIVRVKKVMRK 577 (640)
Q Consensus 553 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 577 (640)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988864
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=7.4e-08 Score=80.03 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+..+...+.+.|++++|.+.|+++. ..| +...|..+...+...|++++|...++++++++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3455666777888899999999888876 444 78889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 006580 561 MRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~ 579 (640)
..|++++|.+.+++..+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.79 E-value=1.4e-07 Score=84.25 Aligned_cols=161 Identities=10% Similarity=0.025 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCCHHHHHHHHHHhHHh
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAA----------------VLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
.+......+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|+..|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444556778999999999999999984 5654 45666 788899999999999999999874
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCChhHH
Q 006580 477 YGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYG--DVKLTENVAERMMDLQLPSPLPY 552 (640)
Q Consensus 477 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~ 552 (640)
-+-+...+..+..++...|++++|++.|+++. ..| +...|..+...+...| +.+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 24467789999999999999999999999987 555 7889999988886655 345566667666543322 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
..++.++...|++++|+..+++..+..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 667888889999999999999988765
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=3.8e-07 Score=86.47 Aligned_cols=164 Identities=10% Similarity=-0.062 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCC--CCC--hh
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-----ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGV--MPG--EE 484 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~p~--~~ 484 (640)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|+..+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445666778888999999988888774322111 12334455667788999999998887643111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------Ch
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP----FQPG-----CSIWESILRASAIYGDVKLTENVAERMMDLQLP------SP 549 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 549 (640)
.+..+...|...|++++|...++++. ..|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888889999999999999888764 1222 258889999999999999999999999987431 25
Q ss_pred hHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 006580 550 LPYSLLTQAYAMRGRWEAI-VRVKKVMRK 577 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 577 (640)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777877654
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=1.7e-07 Score=80.11 Aligned_cols=127 Identities=8% Similarity=-0.055 Sum_probs=96.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASA 526 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 526 (640)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++.. .+.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666677777777777776653 23345667777777777788888877777765 3346778889999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQA--YAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 577 (640)
..|++++|...++++++.+|.+...+..+..+ +.+.|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555544 8889999999999887754
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=2.9e-06 Score=79.60 Aligned_cols=186 Identities=11% Similarity=0.218 Sum_probs=123.7
Q ss_pred HHHHhcC--ChHHHHHHHHhCCC---CChhHHHHHHHHH----HhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006580 389 EMYAKTG--SIDSSTEIFVKLDK---RDLVSWNTIMMGL----TQN---GRAAETLDVFEELLEEGLPPDRITLAAVLLA 456 (640)
Q Consensus 389 ~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 456 (640)
..+...| ++++++..++.+.. .+..+|+.-...+ ... +++++++++++++.+.. +-+..++..-...
T Consensus 75 ~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~v 153 (306)
T 3dra_A 75 NILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWL 153 (306)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3334444 66666666666552 2334444433333 333 67788888888887742 3355566666666
Q ss_pred HhccCCHH--HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 006580 457 CNYGGFVD--KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ------LGKAIDITSTMP-FQP-GCSIWESILRASA 526 (640)
Q Consensus 457 ~~~~~~~~--~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 526 (640)
+.+.|.++ +++++++.+.+. . +-|...|+.-..++.+.|+ ++++++.++++. ..| |...|+.+...+.
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE 231 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 66667766 788888877764 2 3355566666666666665 777888777765 344 7888888888887
Q ss_pred HcCC-hHHHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 527 IYGD-VKLTENVAERMMDLQ---LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 527 ~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
+.|+ .+.+..+.+++++++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7776 444666777777665 77888888888888888888888888888875
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=4e-07 Score=86.96 Aligned_cols=219 Identities=12% Similarity=0.025 Sum_probs=157.0
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCC-CCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 006580 325 YGFGEVALELFQLMLREDIRPTEFTLSCVLSSIP-IPPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEI 403 (640)
Q Consensus 325 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 403 (640)
.|++++|.+++++..+... .. .+. .++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4678889988887765311 10 122 26777777776654 4567788999999888
Q ss_pred HHhCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 006580 404 FVKLDK-----RD----LVSWNTIMMGLTQNGRAAETLDVFEELLEEG---LPPD--RITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 404 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 877652 11 3478888999999999999999999877621 1222 2467788888888 999999999
Q ss_pred HHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 006580 470 FSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP-F---QPG----CSIWESILRASAIYGDVKLTENV 537 (640)
Q Consensus 470 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~~~ 537 (640)
|++..+...-..+ ..++..+...|.+.|++++|++.+++.. . .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988764211111 4578888999999999999999999876 1 122 23566777778888999999999
Q ss_pred HHHHHhcCCCChh-----HHHHHHHHHHhcCChHHHHHH
Q 006580 538 AERMMDLQLPSPL-----PYSLLTQAYAMRGRWEAIVRV 571 (640)
Q Consensus 538 ~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~ 571 (640)
+++++ .+|.... ....++..+ ..|+.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 8885432 244555555 57777766663
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=1.5e-07 Score=88.81 Aligned_cols=135 Identities=8% Similarity=-0.040 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 006580 444 PPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESIL 522 (640)
Q Consensus 444 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 522 (640)
+.+...+..+...+...|++++|...|++..+. -+-+...+..+..++.+.|++++|.+.++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 344456777888899999999999999999874 23456788899999999999999999999998 667655443333
Q ss_pred -HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 523 -RASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 523 -~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
..+...++.+.|...++++++.+|+++..+..++.+|...|++++|...++++.+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 3466778889999999999999999999999999999999999999999999988654
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=4.4e-07 Score=82.21 Aligned_cols=173 Identities=10% Similarity=-0.035 Sum_probs=122.6
Q ss_pred hCCC-CChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCh----hHHHHHHHHHHh--
Q 006580 356 SIPI-PPVEHGSQFHSMAIKSGFDS--NAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRDL----VSWNTIMMGLTQ-- 424 (640)
Q Consensus 356 ~~~~-~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~li~~~~~-- 424 (640)
.+.. |+++.|...++.+.+..... ....+..+..+|.+.|++++|...|+++. .|+. ..+..+..++..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 3444 99999999999999864321 23567778899999999999999999987 3432 144455555544
Q ss_pred ----------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 006580 425 ----------------NGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYA 487 (640)
Q Consensus 425 ----------------~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 487 (640)
.|++++|+..|+++.+. .|+.. ....... ...+...+. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---------~~~~ 151 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---------KYEY 151 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---------HHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---------HHHH
Confidence 57899999999999984 45543 2211111 001111111 1223
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 488 CIIDLLCQAGQLGKAIDITSTMP-FQPG-C---SIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 488 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
.+...|.+.|++++|+..|+++. ..|+ + ..+..+..++.+.|+.++|.+.++++....|.+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 56778889999999999999876 3443 2 5688889999999999999999999998888664
No 120
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=9e-08 Score=83.07 Aligned_cols=121 Identities=6% Similarity=0.034 Sum_probs=90.9
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHHcCCh--H
Q 006580 458 NYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRA-SAIYGDV--K 532 (640)
Q Consensus 458 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~--~ 532 (640)
...|++++|+..++...+. .+.+...+..+...|...|++++|...++++. ..| +...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777776653 23455677777777777788888877777765 333 67777788877 7788888 9
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+|...++++++.+|.++..+..++.+|...|++++|...++++.+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999998887653
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=2.6e-07 Score=74.37 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRAS 525 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 525 (640)
..+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666677777777777766653 13345566667777777777777777777665 334677788888888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRG 563 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 563 (640)
...|++++|...++++++.+|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888776654
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=2.5e-07 Score=75.24 Aligned_cols=116 Identities=8% Similarity=-0.122 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRAS 525 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 525 (640)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35555666666777777777777776653 23345666777777777777777777777765 333677888888899
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 565 (640)
...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888875
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=1.5e-07 Score=81.62 Aligned_cols=156 Identities=8% Similarity=-0.030 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 006580 384 ASSLMEMYAKTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLA-CNY 459 (640)
Q Consensus 384 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 459 (640)
...+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34566778899999999999999883 46778899999999999999999999998764 4444333222211 122
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHHcCChHHHH
Q 006580 460 GGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG---CSIWESILRASAIYGDVKLTE 535 (640)
Q Consensus 460 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~ 535 (640)
.+....|+..+++..+. .+.+...+..+...+...|++++|...++++. ..|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333578888887764 23357788899999999999999999999876 5553 568999999999999999999
Q ss_pred HHHHHHHh
Q 006580 536 NVAERMMD 543 (640)
Q Consensus 536 ~~~~~~~~ 543 (640)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=2.1e-07 Score=76.01 Aligned_cols=114 Identities=9% Similarity=-0.039 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASA 526 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 526 (640)
.+..+...+...|++++|+..+++..+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4444444555555555555555554431 12234445555555555555555555555544 2335667777778888
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGR 564 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 564 (640)
..|++++|...++++++.+|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888777664
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=5.6e-08 Score=91.47 Aligned_cols=189 Identities=6% Similarity=-0.082 Sum_probs=137.4
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD--KR-DLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLL 455 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 455 (640)
+...+..+...+.+.|++++|...|++.. .| +...|..+..+|...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 44566778888999999999999999876 34 7788999999999999999999999999884 45 4568888889
Q ss_pred HHhccCCHHHHHHHHHHhHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 006580 456 ACNYGGFVDKGMLVFSAMKEEYGVMP---GEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVK 532 (640)
Q Consensus 456 ~~~~~~~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (640)
++...|++++|...|+...+...-.+ ....+..+ ...+...+.. .......++......+... ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 99999999999999998876411111 11111111 1222222222 2222334455554444332 368999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 006580 533 LTENVAERMMDLQLPSPLPYSLLTQAYAMR-GRWEAIVRVKKVMRKN 578 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 578 (640)
+|.+.++++++.+|.+......+...+.+. +.+++|.++|+.+.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999888888888777776 7899999999988654
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=1.2e-05 Score=81.79 Aligned_cols=81 Identities=6% Similarity=-0.118 Sum_probs=42.8
Q ss_pred CChHHHHHHHhccCC--CCeeeHHHHHHHHHhcCC-hhHHHHHHHHhHHC-CCCC-CcchHHHHHHHHh----ccCCchH
Q 006580 194 GVLYYAFGVFLNMEE--LDIISWNSLISGCFNSGY-GELALDQFYSMRYS-GYSP-DEYTISIVINACT----KLRNLDK 264 (640)
Q Consensus 194 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~ 264 (640)
|+++.+..+|+.... |++..|...+....+.+. .+....+|+..... |..| +...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 566777777766653 566666666655555542 23445555555442 3223 3334444444432 2345666
Q ss_pred HHHHHHHHHH
Q 006580 265 GKQVFALSVK 274 (640)
Q Consensus 265 a~~~~~~~~~ 274 (640)
+.++|+.++.
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=5.4e-07 Score=80.79 Aligned_cols=123 Identities=8% Similarity=-0.120 Sum_probs=73.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYG 529 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 529 (640)
.+...+...|++++|+..+++. +.|+...+..+...|.+.|++++|++.+++.. .+.+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444455566666666666543 23455566666666666666666666666554 2234556666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 530 DVKLTENVAERMMDLQLPSP----------------LPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
++++|...++++++..|.+. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 66666666666666655544 566666666666666666666666665544
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.67 E-value=2e-06 Score=76.86 Aligned_cols=174 Identities=6% Similarity=-0.089 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-CChhHHHHHHHHHHhCC----ChHHHHHHHHHHH
Q 006580 365 GSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDK-RDLVSWNTIMMGLTQNG----RAAETLDVFEELL 439 (640)
Q Consensus 365 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~ 439 (640)
|...+....+.| ++..+..|...|...+++++|...|++..+ .++..+..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 566677788889899999999999998774 467788888888877 6 8999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHh
Q 006580 440 EEGLPPDRITLAAVLLACNY----GGFVDKGMLVFSAMKEEYGVMPG---EEHYACIIDLLCQ----AGQLGKAIDITST 508 (640)
Q Consensus 440 ~~g~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 508 (640)
+.| +...+..|...|.. .+++++|+..|++..+. .|+ ...+..|...|.. .+++++|++.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 865 56677777777877 88999999999988754 342 6788889999988 8899999999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCCCC
Q 006580 509 MP-FQPGCSIWESILRASAIY-G-----DVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 509 ~~-~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p~~ 548 (640)
.. ..+++..+..|...|... | ++++|...++++.+.+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 86 435677788888888653 3 8999999999999886543
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.66 E-value=3.6e-07 Score=88.37 Aligned_cols=143 Identities=9% Similarity=-0.052 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
...|..+...+.+.|++++|+..|++..+. .|+...+ ..+.+.+.- . .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHHHH
Confidence 445566666666666666666666666653 2221000 001111000 0 01356777888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH-
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAI- 568 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 568 (640)
+|.+.|++++|++.++++. ..| +...|..+..++...|++++|...++++++++|.+..++..++.++.+.|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888876 344 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 006580 569 VRVKKVMR 576 (640)
Q Consensus 569 ~~~~~~m~ 576 (640)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44666664
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.3e-07 Score=75.19 Aligned_cols=97 Identities=9% Similarity=-0.025 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+..+...+.+.|++++|++.|++.. ..| +...|..+...+...|++++|+..++++++.+|.++..|..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456667778888888888888888876 344 78889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 006580 561 MRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~ 579 (640)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999888754
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=1.1e-05 Score=75.65 Aligned_cols=161 Identities=4% Similarity=-0.012 Sum_probs=126.6
Q ss_pred CChHHHHHHHHhCC---CCChhHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 006580 395 GSIDSSTEIFVKLD---KRDLVSWNTIMMGLTQNGRAA--ETLDVFEELLEEGLPPDRITLAAVLLACNYGGF------V 463 (640)
Q Consensus 395 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~ 463 (640)
++++++..+++.+. ..+..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...++.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 67889999998887 346677777777778888888 9999999999864 4455677766666666666 8
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHHcCChHHHHHH
Q 006580 464 DKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK-AIDITSTMP-F----QPGCSIWESILRASAIYGDVKLTENV 537 (640)
Q Consensus 464 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 537 (640)
+++++.++.+... .+-|...|+.+...+.+.|+..+ +.++..++. . ..++..+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999988874 34567788888888888887544 556777665 2 34788999999999999999999999
Q ss_pred HHHHHh-cCCCChhHHHHHHHH
Q 006580 538 AERMMD-LQLPSPLPYSLLTQA 558 (640)
Q Consensus 538 ~~~~~~-~~p~~~~~~~~l~~~ 558 (640)
++.+.+ .+|.....|...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999997 699888888766543
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=7.9e-07 Score=75.86 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+..+...+.+.|++++|++.|++.. ..| +...|..+...+...|++++|+..++++++++|.++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3345555566666666666666666654 333 56666667777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhC
Q 006580 561 MRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~ 578 (640)
..|++++|...+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777766654
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=2.9e-07 Score=72.46 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--ChhHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP--SPLPYSLLTQA 558 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 558 (640)
...+..+...+.+.|++++|...++++. .+.+...+..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4456667777888888888888887765 3446778889999999999999999999999999999 99999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC
Q 006580 559 YAMR-GRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 559 ~~~~-g~~~~a~~~~~~m~~~~~ 580 (640)
+... |++++|.+.+++..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999887664
No 134
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=4.6e-05 Score=77.46 Aligned_cols=201 Identities=8% Similarity=0.022 Sum_probs=105.0
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhc
Q 006580 229 LALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSV-RLFEQL 307 (640)
Q Consensus 229 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 307 (640)
.+..+|+++... .+-+...|...+..+...|+.+.|..+++..+.. +.+...+.. |....+.++.. .+.+..
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 345566665542 2233445555555556666667777777666666 222222221 11111111111 111110
Q ss_pred C------------CCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHH--HHhhCCCCChHHHHHHHHHHH
Q 006580 308 D------------RWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSC--VLSSIPIPPVEHGSQFHSMAI 373 (640)
Q Consensus 308 ~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~--~l~~~~~~~~~~a~~~~~~~~ 373 (640)
. ......|-..+....+.+..+.|..+|... +. ...+...|.. .+.....++.+.|..+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001234555556555667778888888777 21 1122222221 111111146777777777777
Q ss_pred HhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 374 KSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 374 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
+.- +.++..+...++...+.|+.+.|..+|+++.+ ....|...+.--...|+.+.+.++++++.+
T Consensus 348 ~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 653 33344455566666777777778888777743 455666666655666777777776666654
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.61 E-value=2.3e-07 Score=74.39 Aligned_cols=95 Identities=11% Similarity=-0.083 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 562 (640)
.+..+...+.+.|++++|+..++++. ..| +...|..+..++...|++++|+..++++++++|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35556778889999999999998887 445 7889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 006580 563 GRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 563 g~~~~a~~~~~~m~~~~ 579 (640)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999988754
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=7e-07 Score=73.43 Aligned_cols=99 Identities=9% Similarity=-0.036 Sum_probs=86.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 006580 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 558 (640)
.+...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456677788888888888888888888776 334 678899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 006580 559 YAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~ 579 (640)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999988754
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=9.6e-07 Score=73.61 Aligned_cols=105 Identities=8% Similarity=-0.023 Sum_probs=88.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 006580 443 LPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWE 519 (640)
Q Consensus 443 ~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 519 (640)
+.|+. ..+..+...+.+.|++++|+..|+...+. -+.+...|..+..+|...|++++|++.|+++. ..| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 36677778888999999999999998864 24457788889999999999999999999887 455 678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 520 SILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
.+..++...|++++|...|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998764
No 138
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=4.1e-07 Score=86.87 Aligned_cols=195 Identities=8% Similarity=-0.050 Sum_probs=146.7
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 360 PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439 (640)
Q Consensus 360 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (640)
|++++|..++++..+..-. . + +...++++.|...|.. ....|...|++++|...|.+..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHH
Confidence 5677888888777764211 1 0 1114778888777655 4667888999999999999887
Q ss_pred HC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 440 EE----GLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 440 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
+. |-.+. ..+|..+...|...|++++|+..+++..+.+.-..+ ..++..+..+|.. |++++|++.+++..
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 62 21111 247888888999999999999999987654211111 3567788889988 99999999998876
Q ss_pred -CCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 511 -FQP---G----CSIWESILRASAIYGDVKLTENVAERMMDLQLPS------PLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 511 -~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
..| + ..++..+...+...|++++|...++++++..|.+ ...+..++.++...|++++|...+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 1 4678889999999999999999999999985533 2367788888899999999999999887
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=2.4e-07 Score=77.41 Aligned_cols=108 Identities=14% Similarity=0.008 Sum_probs=86.1
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 006580 443 LPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWE 519 (640)
Q Consensus 443 ~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 519 (640)
+.|+. ..+..+...+...|++++|+..|+..... -+.+...|..+..+|...|++++|++.++++. ..| ++..+.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34543 35666777788888888888888888764 23466778888888889999999999888876 444 678889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 006580 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 552 (640)
.+..++...|++++|...++++++..|.++...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999998876553
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=1.1e-06 Score=69.84 Aligned_cols=96 Identities=17% Similarity=0.066 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
..+..+...+...|++++|.+.+++.. .+.+...+..+...+...|++++|...++++++.+|.++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 345555666666666666666666654 233566666777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 006580 562 RGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 562 ~g~~~~a~~~~~~m~~~~ 579 (640)
.|++++|.+.+++..+.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TTCHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHcC
Confidence 777777777777666543
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=4.7e-06 Score=78.85 Aligned_cols=162 Identities=8% Similarity=-0.044 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-Ch------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 006580 383 VASSLMEMYAKTGSIDSSTEIFVKLDK--R-DL------VSWNTIMMGLTQNGRAAETLDVFEELLEEGL---PPD--RI 448 (640)
Q Consensus 383 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~ 448 (640)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999876541 1 11 2344456667888999999999999886321 222 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------CH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG-----EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-------GC 515 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~ 515 (640)
+++.+...|...|++++|+..+++..+.....|+ ..++..+...|.+.|++++|++.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998743222222 2578889999999999999999998875 111 16
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 006580 516 SIWESILRASAIYGDVKLT-ENVAERMMDL 544 (640)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 544 (640)
.++..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6889999999999999999 8889988765
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=4.1e-07 Score=73.67 Aligned_cols=95 Identities=7% Similarity=-0.037 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-------hHHHH
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP-------LPYSL 554 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 554 (640)
..+..+...+.+.|++++|++.|+++. ..| +...|..+..+|...|++++|+..++++++++|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 346677888888899999999888876 445 688899999999999999999999999999977543 36778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 006580 555 LTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
++.++...|++++|++.+++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888999999999999999987764
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=2.6e-06 Score=77.93 Aligned_cols=183 Identities=11% Similarity=-0.028 Sum_probs=133.2
Q ss_pred hcCChHHHHHHHHhCCC--C-ChhHHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 006580 393 KTGSIDSSTEIFVKLDK--R-DLVSWNTI-------MMGLTQNGRAAETLDVFEELLEEGLPPDR--------------- 447 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--------------- 447 (640)
..++...|.+.|.++.. | ....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888888888888873 3 45577766 3455555555555555554443 23322
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HH
Q 006580 448 -------ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPG----CS 516 (640)
Q Consensus 448 -------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 516 (640)
.....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12334566778899999999999887643 35444666667788999999999999987663333 24
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDLQ--LP-SPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67888899999999999999999998553 43 445788899999999999999999999998654
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=1.1e-05 Score=76.22 Aligned_cols=158 Identities=9% Similarity=-0.036 Sum_probs=121.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC-----C----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006580 387 LMEMYAKTGSIDSSTEIFVKLDKR-----D----LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLP-PD----RITLAA 452 (640)
Q Consensus 387 l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 452 (640)
.+..+...|++++|...++...+. + ...+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999887631 2 113344666777788999999999999984322 22 236888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhC----CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 006580 453 VLLACNYGGFVDKGMLVFSAMKEEYG----VMPG-EEHYACIIDLLCQAGQLGKAIDITSTMP-------FQPG-CSIWE 519 (640)
Q Consensus 453 ll~~~~~~~~~~~A~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~ 519 (640)
+...|...|++++|+..++++.+... ..+. ..++..+...|.+.|++++|.+.+++.. ..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1111 3377889999999999999999998775 1122 67889
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHhc
Q 006580 520 SILRASAIYGD-VKLTENVAERMMDL 544 (640)
Q Consensus 520 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 544 (640)
.+...+...|+ +++|.+.+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999999876
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=2.2e-06 Score=67.96 Aligned_cols=110 Identities=12% Similarity=0.009 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRAS 525 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 525 (640)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++.. ..| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666677777777777776653 23345666667777777777777777777665 333 677888888899
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 526 AIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 526 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
...|++++|...++++++.+|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999888887776554
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.2e-06 Score=77.58 Aligned_cols=166 Identities=10% Similarity=-0.055 Sum_probs=101.1
Q ss_pred hcCChHHHHHHHHhCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 006580 393 KTGSIDSSTEIFVKLDK---RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
..|+++++.+.|+.-.. .....+..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------------~ 78 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------------I 78 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH---------------H
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh---------------h
Confidence 34455555555443221 13345666666777777777777777777763 2221100000 0
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 006580 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 470 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 547 (640)
+..-.. ......+..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|...++++++.+|.
T Consensus 79 ~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 79 LLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 000000 0012456677778888888888888888776 3447788999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 006580 548 SPLPYSLLTQAYAMRGRWEAIV-RVKKVMRKNG 579 (640)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 579 (640)
++..+..++.++...|+.+++. ..++.|...+
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998888877 5566555443
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=1.4e-06 Score=69.99 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+..+...+...|++++|.+.++++. .+.+..++..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4677888899999999999999999986 44478899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 006580 561 MRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~ 579 (640)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=1.1e-06 Score=76.08 Aligned_cols=127 Identities=11% Similarity=0.119 Sum_probs=100.5
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HHhcCCh--
Q 006580 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL-LCQAGQL-- 499 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 499 (640)
...|++++|+..+++..+.. +.+...+..+...+...|++++|+..|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998888752 345578888888899999999999999988864 23456677788888 7788998
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 006580 500 GKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 552 (640)
++|...++++. ..| +...+..+...+...|++++|...++++++.+|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999998876 444 678899999999999999999999999999999876543
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=1.1e-06 Score=71.69 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=90.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 006580 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQA 558 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 558 (640)
.+...+..+...+.+.|++++|.+.+++.. ..| +...+..+...+...|++++|...++++++.+|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 346678888999999999999999999876 444 788999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 006580 559 YAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 559 ~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999988754
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=4.7e-06 Score=73.77 Aligned_cols=153 Identities=10% Similarity=-0.018 Sum_probs=90.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCCC-ChhHHHHHHHHHHhcCCh
Q 006580 424 QNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEY---GVMP-GEEHYACIIDLLCQAGQL 499 (640)
Q Consensus 424 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 499 (640)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.. +..| ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555665533333221 11123355555555566666666666665554421 1111 123455566666666676
Q ss_pred HHHHHHHHhCC----CCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCC----hhHHHHHHHHHHhcCC
Q 006580 500 GKAIDITSTMP----FQP-G----CSIWESILRASAIYGDVKLTENVAERMMDLQ--LPS----PLPYSLLTQAYAMRGR 564 (640)
Q Consensus 500 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~ 564 (640)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++.. ..+ ...+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666666543 122 2 3356777788888888999988888888662 222 2346788899999999
Q ss_pred hHHHHHHHHHHHh
Q 006580 565 WEAIVRVKKVMRK 577 (640)
Q Consensus 565 ~~~a~~~~~~m~~ 577 (640)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.9e-06 Score=69.67 Aligned_cols=110 Identities=8% Similarity=-0.082 Sum_probs=80.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASA 526 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 526 (640)
.+..+...+.+.|++++|+..|++..+. .+.+...|..+..++.+.|++++|++.+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555556666777777777777776653 23345667777777777777777777777765 344 6778888888899
Q ss_pred HcCChHHHHHHHHHHHhcC------CCChhHHHHHHHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQ------LPSPLPYSLLTQAYA 560 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 560 (640)
..|++++|...++++++++ |.+......+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998 777777776665543
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=5.3e-06 Score=68.99 Aligned_cols=110 Identities=9% Similarity=-0.110 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESI 521 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 521 (640)
..+..+...+...|++++|+..|++..+ ..|+ ...+..+...|...|++++|++.+++.. ..| +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444455555555555555555442 2333 3445555555556666666666655544 223 56667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+...|++++|...++++++.+|.+...+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 777777778888888888888777777777666655543
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=1.5e-06 Score=72.04 Aligned_cols=105 Identities=14% Similarity=-0.015 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASA 526 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 526 (640)
.+..+...+...|++++|+..|+..... -+.+...|..+..+|.+.|++++|+..++++. ..| ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555566677778888888888877753 23456677777888888888888888888776 344 6778888899999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
..|++++|...++++++..|.++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999988877665543
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.6e-06 Score=70.99 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=90.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 006580 481 PGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLL 555 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 555 (640)
.+...+..+...+...|++++|.+.+++.. ..|+ ...|..+...+...|++++|...++++++.+|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 356678888999999999999999999976 6676 67888999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 006580 556 TQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.+|...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998754
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=2.5e-06 Score=69.16 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=89.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY 559 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 559 (640)
+...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45567788889999999999999999876 3447889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 006580 560 AMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 560 ~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998754
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=2.6e-06 Score=72.63 Aligned_cols=108 Identities=12% Similarity=-0.027 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 006580 447 RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRA 524 (640)
Q Consensus 447 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 524 (640)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++.. ..| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666667777788888888888877764 23356677778888888888888888888776 444 68899999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
+...|++++|...++++++++|.+...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999998887665544
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=2.1e-06 Score=72.98 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...|..+..++...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 346788888899999999999999999999999999999999999999999999999999888754
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=5.2e-06 Score=73.51 Aligned_cols=152 Identities=11% Similarity=0.028 Sum_probs=102.0
Q ss_pred hcCChHHHHH---HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHH
Q 006580 393 KTGSIDSSTE---IFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE----EGLPPD-RITLAAVLLACNYGGFVD 464 (640)
Q Consensus 393 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~ 464 (640)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++... .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 54443333456677777788888888888888877765 122222 245667777788888888
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCh
Q 006580 465 KGMLVFSAMKEEYGVMP-G----EEHYACIIDLLCQAGQLGKAIDITSTMP----FQPG----CSIWESILRASAIYGDV 531 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~ 531 (640)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887665422122 2 3356677788888888888888887764 1122 23457778888889999
Q ss_pred HHHHHHHHHHHhc
Q 006580 532 KLTENVAERMMDL 544 (640)
Q Consensus 532 ~~a~~~~~~~~~~ 544 (640)
++|.+.+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888776
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=6.6e-06 Score=70.00 Aligned_cols=129 Identities=10% Similarity=-0.046 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 492 (640)
..|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777888888888888888887742 335567777777888888888888888887764 23456677888888
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CHHHHHHHH--HHHHHcCChHHHHHHHHHHHhc
Q 006580 493 LCQAGQLGKAIDITSTMP-FQP-GCSIWESIL--RASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
+...|++++|.+.++++. ..| +...+..+. ..+...|++++|...+++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888876 333 555554333 3366778888888888876554
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=1.8e-06 Score=78.99 Aligned_cols=137 Identities=7% Similarity=-0.109 Sum_probs=103.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG--EEHYACIIDL 492 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~ 492 (640)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566778889999999999888764 465545555556788899999999999855331 1 111 2367778889
Q ss_pred HHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 493 LCQAGQLGKAIDITSTMP---FQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
+.+.|++++|++.|++.. ..|. ...+.....++.+.|+.++|..+|+++...+|. ...+..|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999874 2143 346778888899999999999999999999998 77766664
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.9e-06 Score=71.02 Aligned_cols=91 Identities=11% Similarity=-0.069 Sum_probs=71.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCC
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-FQPG-------------CSIWESILRASAIYGDVKLTENVAERMMDL-------QLP 547 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~ 547 (640)
....+.+.|++++|++.|++.. ..|+ ...|..+..++...|++++|+..+++++++ +|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3444445555555555555443 2222 338899999999999999999999999999 999
Q ss_pred ChhHH----HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 548 SPLPY----SLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 548 ~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...| ...+.++...|++++|+..|++..+..
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999 999999999999999999999998753
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=3.8e-06 Score=68.89 Aligned_cols=113 Identities=10% Similarity=-0.122 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 006580 445 PDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESIL 522 (640)
Q Consensus 445 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 522 (640)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++.. ..| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34556666777777777777777777777653 23345677777777788888888888777765 334 677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q 006580 523 RASAIYGDVKLTENVAERMMDLQLP-----SPLPYSLLTQAY 559 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 559 (640)
..+...|++++|...++++++..|. +......+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988776 455555554443
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=4.8e-06 Score=67.44 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=64.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---hhHHHHHHHHHH
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-FQP-GC---SIWESILRASAIYGDVKLTENVAERMMDLQLPS---PLPYSLLTQAYA 560 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 560 (640)
+...+...|++++|.+.++++. ..| +. ..+..+...+...|++++|...++++++..|.+ +..+..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4455566667777776666654 223 22 466677777777888888888888888888877 666778888888
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 006580 561 MRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 561 ~~g~~~~a~~~~~~m~~~~ 579 (640)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 8888888888888777654
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=2.7e-06 Score=68.93 Aligned_cols=95 Identities=6% Similarity=0.042 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------hhHHHH
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPS-------PLPYSL 554 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 554 (640)
..+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345555666666666666666666654 33356667777777777777777777777777776644 667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 006580 555 LTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 555 l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777777777777777777664
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=1.3e-06 Score=77.32 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP-FQP-G----------------CSIWESILRASAIYGDVKLTENVAERMMDLQ 545 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 545 (640)
..+..+...+.+.|++++|++.|++.. ..| + ...|..+...+...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 345556666777777777777777654 222 2 2688889999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 546 LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 546 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
|.++..+..++.+|...|++++|...+++..+..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999988754
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.31 E-value=6.2e-06 Score=83.37 Aligned_cols=145 Identities=6% Similarity=-0.045 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
...|..+...+.+.|++++|+..|++..+. .|+...+ .-+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHH--------HHHHHHHHHHH
Confidence 345566666666677777777777666652 2221000 0000000 000 01356777888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 569 (640)
+|.+.|++++|+..++++. ..| +...|..+..+|...|++++|...|+++++++|.+..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999888876 344 78899999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHHhC
Q 006580 570 R-VKKVMRKN 578 (640)
Q Consensus 570 ~-~~~~m~~~ 578 (640)
+ .++.|..+
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 5 55655443
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.30 E-value=8.3e-05 Score=70.51 Aligned_cols=183 Identities=12% Similarity=0.124 Sum_probs=107.7
Q ss_pred hcC-ChHHHHHHHHhCCC---CChhHHHHHHHHHHhC-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--
Q 006580 393 KTG-SIDSSTEIFVKLDK---RDLVSWNTIMMGLTQN-G-RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVD-- 464 (640)
Q Consensus 393 ~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-- 464 (640)
..| .+++++..++.+.. .+..+|+.-...+... + ++++++++++++.+.. +-|..+++.-...+.+.|.++
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccccc
Confidence 344 36666666666552 2444555544444444 4 6677777777776642 234445544443333333333
Q ss_pred ------HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 006580 465 ------KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ-------LGKAIDITSTMP-FQP-GCSIWESILRASAIYG 529 (640)
Q Consensus 465 ------~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 529 (640)
++++.++++.+. . +-|...|+....++.+.++ ++++++.++++. ..| |...|+.+-..+.+.|
T Consensus 179 ~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 677777777664 2 3355566666666666655 567777776665 344 6777777776666655
Q ss_pred Ch--------------------HHHHHHHHHHHhcC------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 530 DV--------------------KLTENVAERMMDLQ------LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 530 ~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+. ....+....+.... +.++.+...|+++|...|+.++|.++++.+.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 257 LPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 43 23333333333322 577888899999999999999999999998643
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=7.1e-07 Score=71.09 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=61.6
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 006580 496 AGQLGKAIDITSTMP-F---QP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 496 ~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
.|++++|+..|++.. . .| +...+..+...+...|++++|+..++++++.+|.++..+..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466666777776655 3 24 355677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCC
Q 006580 571 VKKVMRKNG 579 (640)
Q Consensus 571 ~~~~m~~~~ 579 (640)
.+++..+..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888777643
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=1.7e-06 Score=87.81 Aligned_cols=117 Identities=7% Similarity=-0.051 Sum_probs=91.3
Q ss_pred HHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChH
Q 006580 455 LACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVK 532 (640)
Q Consensus 455 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 532 (640)
..+.+.|++++|++.+++..+. .+.+...|..+..+|.+.|++++|++.++++. ..| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455677888888888877764 23346677788888888888888888888776 455 6778899999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 006580 533 LTENVAERMMDLQLPSPLPYSLLTQA--YAMRGRWEAIVRVKK 573 (640)
Q Consensus 533 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 573 (640)
+|++.++++++.+|.+...+..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988888888887 888899999999887
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=7.2e-06 Score=76.90 Aligned_cols=113 Identities=7% Similarity=-0.134 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 006580 446 DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILR 523 (640)
Q Consensus 446 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 523 (640)
+...+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|++.++++. ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456777778888889999999999888764 23367778888888889999999999888876 455 6778888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
++...|++++|...++++++++|.++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 8889999999999999998888766544443433333
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.4e-05 Score=78.71 Aligned_cols=189 Identities=6% Similarity=-0.096 Sum_probs=135.0
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C---C---------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH
Q 006580 389 EMYAKTGSIDSSTEIFVKLDK--R---D---------------LVSWNTIMMGLTQNGRAAETLDVFEELLEE-GLPPDR 447 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 447 (640)
..+.+.|++++|.+.|..+.+ + + ..++..+...|...|++++|.+.+.++... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677888888888877651 1 0 124677888999999999999999887762 111222
Q ss_pred H----HHHHHHHHHhccCCHHHHHHHHHHhHHhh---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CC
Q 006580 448 I----TLAAVLLACNYGGFVDKGMLVFSAMKEEY---GVMP-GEEHYACIIDLLCQAGQLGKAIDITSTMP-------FQ 512 (640)
Q Consensus 448 ~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 512 (640)
. ..+.+-..+...|+++.|..+++...... +..+ ...++..+...|...|++++|..+++++. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 22333334556788999999888765421 2222 24577888999999999999999988764 12
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 513 P-GCSIWESILRASAIYGDVKLTENVAERMMDLQ---LPS----PLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 513 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
+ ...++..++..|...|++++|..++++++... +.+ ...+..++..+...|++++|...+....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 25578888999999999999999999998762 222 24577788888999999999988877654
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.25 E-value=9e-06 Score=78.45 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCC--CCC----------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006580 380 NAVVASSLMEMYAKTGSIDSSTEIFVKLD--KRD----------------LVSWNTIMMGLTQNGRAAETLDVFEELLEE 441 (640)
Q Consensus 380 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 441 (640)
+...+..+...|.+.|++++|...|++.. .|+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677888999999999999999999876 232 245555555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 442 GLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 442 g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
. +.+...+..+..++...|++++|+..|++..+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 22333444444455555555555555554443
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=7.6e-06 Score=66.22 Aligned_cols=108 Identities=9% Similarity=-0.019 Sum_probs=60.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HHHHHHH
Q 006580 451 AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-F----QPG----CSIWESI 521 (640)
Q Consensus 451 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~~l 521 (640)
..+...+...|++++|...++...+. .+.+...+..+...+...|++++|...++++. . .++ ..++..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33344444444444444444444432 12233444444455555555555555554443 1 122 5567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 522 LRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 522 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
...+...|++++|...++++++..| ++.....+..+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7788888888888888888888877 56666666555443
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=1.4e-05 Score=67.40 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CChh
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP----FQPG----CSIWESILRASAIYGDVKLTENVAERMMDLQL------PSPL 550 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 550 (640)
.+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444445555555555555554432 0111 34566777778888888888888888876622 2245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 551 PYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 551 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.+..++.++...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678889999999999999999988765
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=7.2e-06 Score=64.22 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP---GCSIWESILRA 524 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~ 524 (640)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555556666666666666665543 12344556666666666677777776666654 233 46677777778
Q ss_pred HHHc-CChHHHHHHHHHHHhcCCCCh
Q 006580 525 SAIY-GDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 525 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 549 (640)
+... |++++|.+.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888877653
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.21 E-value=0.00021 Score=67.43 Aligned_cols=180 Identities=8% Similarity=0.014 Sum_probs=130.8
Q ss_pred hHHHHHHHHhCC---CCChhHHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 006580 397 IDSSTEIFVKLD---KRDLVSWNTIMMGLTQNG--RAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF-VDKGMLVF 470 (640)
Q Consensus 397 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~A~~~~ 470 (640)
++++...++.+. ..+..+|+.-.-.+...| .+++++++++++.+.. +-|..+++.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666676665 236667777666666777 4789999999999853 4456677766666667777 68899999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc------
Q 006580 471 SAMKEEYGVMPGEEHYACIIDLLCQA--------------GQLGKAIDITSTMP-FQP-GCSIWESILRASAIY------ 528 (640)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------ 528 (640)
+.+.+. . +-|...|+....++.+. +.++++++.+.... ..| |...|+.+-..+.+.
T Consensus 169 ~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH-C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888875 2 44566676666665554 45788888888876 445 888898777666655
Q ss_pred -----CChHHHHHHHHHHHhcCCCChhHHHHHHHHH---HhcCChHHHHHHHHHHHhCC
Q 006580 529 -----GDVKLTENVAERMMDLQLPSPLPYSLLTQAY---AMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 529 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.++++++.++++++..|++.-++..++... ...|..+++..++.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4588999999999999999977666555432 24678889999999998755
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=0.00067 Score=64.32 Aligned_cols=193 Identities=9% Similarity=-0.026 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-C-ChHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCChH-------
Q 006580 362 VEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT-G-SIDSSTEIFVKLDKR---DLVSWNTIMMGLTQNGRAA------- 429 (640)
Q Consensus 362 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~------- 429 (640)
++++..+++.+.... +-+..+++--..++.+. + ++++++++++.+.+. |...|+--.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 444444444444433 33344444444444444 5 788999999988854 5556665544555555555
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh--
Q 006580 430 -ETLDVFEELLEEGLPPDRITLAAVLLACNYGGF-------VDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQL-- 499 (640)
Q Consensus 430 -~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-- 499 (640)
++++.++++.+.. +-|...++.....+.+.+. ++++++.+++.... .+-|...|+.+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 184 GSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcc
Confidence 8999999999863 4466678777777777775 68889988888763 344566777777777777654
Q ss_pred ------------------HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCChhHH
Q 006580 500 ------------------GKAIDITSTMP-F-------QPGCSIWESILRASAIYGDVKLTENVAERMM-DLQLPSPLPY 552 (640)
Q Consensus 500 ------------------~~A~~~~~~~~-~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~ 552 (640)
.+..++..++. . .+++..+..|+..|...|+.++|.++++.+. +.+|-....|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 34445555544 2 3578889999999999999999999999997 5588766666
Q ss_pred HHHHHH
Q 006580 553 SLLTQA 558 (640)
Q Consensus 553 ~~l~~~ 558 (640)
.-.+..
T Consensus 341 ~~~~~~ 346 (349)
T 3q7a_A 341 EFRRRE 346 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.20 E-value=8.1e-06 Score=65.22 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=64.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYG 529 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 529 (640)
.+...+.+.|++++|+..++...+. -+.+...|..+..++.+.|++++|+..+++.. ..| +...+..+...+...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566677777777777776653 23355666677777777777777777777765 444 6777888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCh
Q 006580 530 DVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 530 ~~~~a~~~~~~~~~~~p~~~ 549 (640)
++++|...++++++.+|.+.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888653
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=4.6e-06 Score=80.59 Aligned_cols=149 Identities=11% Similarity=-0.026 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 412 LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 412 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445677777888889999999999988873 455442 233344444433221 136778888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH-HhcCChHHH
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAY-AMRGRWEAI 568 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 568 (640)
+|.+.|++++|+..+++.. ..| +...|..+..+|...|++++|...++++++++|.++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 444 7889999999999999999999999999999999998988888774 455777888
Q ss_pred HHHHHHHHhCCC
Q 006580 569 VRVKKVMRKNGI 580 (640)
Q Consensus 569 ~~~~~~m~~~~~ 580 (640)
..++++|.....
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888876543
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=1.1e-05 Score=78.91 Aligned_cols=137 Identities=6% Similarity=-0.111 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 006580 413 VSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDL 492 (640)
Q Consensus 413 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 492 (640)
..|..+...+.+.|++++|++.|++.++. .|... .....+++.. ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~---------~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK---------LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG---------GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH---------HHHHHHHHHHHHHHH
Confidence 34556666667777777777777666651 11100 0000111000 001234578888889
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHH
Q 006580 493 LCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVR 570 (640)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 570 (640)
|.+.|++++|++.++++. ..| +...|..+..++...|++++|...++++++++|.+...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 555 688999999999999999999999999999999999999999999999998888765
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=3.5e-05 Score=62.20 Aligned_cols=103 Identities=11% Similarity=-0.023 Sum_probs=68.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C---HHHHHHHHHH
Q 006580 453 VLLACNYGGFVDKGMLVFSAMKEEYGVMPGE---EHYACIIDLLCQAGQLGKAIDITSTMP-FQP-G---CSIWESILRA 524 (640)
Q Consensus 453 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~~ 524 (640)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...++++. ..| + ...+..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3344555666666666666665531 1112 355566666677777777777776654 233 3 5667778888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 525 SAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
+...|++++|...++++++..|+++........
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 888899999999999999998887766554443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.8e-05 Score=80.28 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=51.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 006580 422 LTQNGRAAETLDVFEELLEEGLPP-DRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 500 (640)
+.+.|++++|++.+++..+. .| +..++..+..++.+.|++++|++.+++..+. -+.+...+..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 33445555555555555542 22 2344455555555555555555555555432 1223444555555555555555
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHH--HHHcCChHHHHHHHH
Q 006580 501 KAIDITSTMP-FQP-GCSIWESILRA--SAIYGDVKLTENVAE 539 (640)
Q Consensus 501 ~A~~~~~~~~-~~~-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 539 (640)
+|.+.++++. ..| +...+..+..+ +...|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555543 222 22333333333 445555555555555
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=1e-05 Score=68.68 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP-LPYSLLTQAY 559 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 559 (640)
...|..+..+|.+.|++++|+..++++. ..| +...|..+..++...|++++|...++++++++|.++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567788888999999999999988876 444 788999999999999999999999999999999887 5455554444
Q ss_pred H
Q 006580 560 A 560 (640)
Q Consensus 560 ~ 560 (640)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=2.9e-06 Score=67.45 Aligned_cols=92 Identities=10% Similarity=-0.017 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHH
Q 006580 460 GGFVDKGMLVFSAMKEEYG--VMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTE 535 (640)
Q Consensus 460 ~~~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~ 535 (640)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|++.++++. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666677777666542 1 12234556667777777777777777777765 344 6778888888889999999999
Q ss_pred HHHHHHHhcCCCChhHH
Q 006580 536 NVAERMMDLQLPSPLPY 552 (640)
Q Consensus 536 ~~~~~~~~~~p~~~~~~ 552 (640)
..++++++..|.++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999988876554
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.11 E-value=0.00014 Score=75.06 Aligned_cols=171 Identities=9% Similarity=-0.052 Sum_probs=137.9
Q ss_pred cCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 006580 394 TGSIDSSTEIFVKLDK--R-DLVSWNTIMMGLTQNGR----------AAETLDVFEELLEEGLPPDRITLAAVLLACNYG 460 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 460 (640)
....++|.+.++.+.. | +...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3345677888888873 3 45667766666666666 899999999999852 33556888878888888
Q ss_pred C--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc-------
Q 006580 461 G--FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAG-QLGKAIDITSTMP-FQP-GCSIWESILRASAIY------- 528 (640)
Q Consensus 461 ~--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------- 528 (640)
+ +++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++. ..| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999985 2446778888888888889 8999999999987 555 888999888887763
Q ss_pred -------CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 006580 529 -------GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEA 567 (640)
Q Consensus 529 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 567 (640)
+.++++.+.+++++..+|.+..+|..+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888554
No 186
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.10 E-value=4.7e-05 Score=61.34 Aligned_cols=60 Identities=5% Similarity=-0.095 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPD-RITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
.+..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.+++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455566666666666666666666663 333 34555666666666666666666665543
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=3.5e-05 Score=77.58 Aligned_cols=123 Identities=8% Similarity=0.011 Sum_probs=92.1
Q ss_pred HhccCCHHHHHHHHHHhHHhhC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC------CC---CC-HHHHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEYG--VMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP------FQ---PG-CSIWES 520 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~---~~-~~~~~~ 520 (640)
+...|++++|+.++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. .. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467777777777766654321 1121 3467777788888888888887777654 23 32 447889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc-----CCCChhH---HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 521 ILRASAIYGDVKLTENVAERMMDL-----QLPSPLP---YSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
|...|..+|++++|+.++++++++ +|+++.+ ...+..++...|++++|+.+++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 6766544 5578888999999999999999998754
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.3e-05 Score=77.30 Aligned_cols=150 Identities=8% Similarity=-0.063 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 006580 381 AVVASSLMEMYAKTGSIDSSTEIFVKLDK--RDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACN 458 (640)
Q Consensus 381 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 458 (640)
...+..+...+.+.|++++|...|.+... |+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566778888899999999999998763 32221 223334444433221 136777888888
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HHcCChHHHH
Q 006580 459 YGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRAS-AIYGDVKLTE 535 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~~~~~~a~ 535 (640)
+.|++++|+..+++..+. .+.+...|..+..+|...|++++|.+.|+++. ..| +...+..+.... ...+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988864 23457788889999999999999999999987 556 455566665553 3456788889
Q ss_pred HHHHHHHhcCCCCh
Q 006580 536 NVAERMMDLQLPSP 549 (640)
Q Consensus 536 ~~~~~~~~~~p~~~ 549 (640)
..+++++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999888654
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.2e-05 Score=63.04 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------hhHHH
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS------PLPYS 553 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 553 (640)
+...+..+...+.+.|++++|++.+++.. ..| +...|..+...+...|++++|+..++++++.+|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 44567777788888888888888888876 344 77888999999999999999999999999999988 77788
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 006580 554 LLTQAYAMRGRWEAIVRVKK 573 (640)
Q Consensus 554 ~l~~~~~~~g~~~~a~~~~~ 573 (640)
.++.++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887776655443
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.03 E-value=2.9e-05 Score=59.41 Aligned_cols=65 Identities=8% Similarity=-0.045 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
++..|..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999988764
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=2.4e-05 Score=65.95 Aligned_cols=131 Identities=12% Similarity=0.021 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hh
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLP-PDR----ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EE 484 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~ 484 (640)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555566666666666666655542100 111 24555556666667777777666665543111111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP----FQP----GCSIWESILRASAIYGDVKLTENVAERMMDL 544 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 544 (640)
.+..+...+...|++++|.+.+++.. ... ....+..+...+...|++++|...++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566666777777777777766654 111 1345677778888889999999998888776
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=3.7e-05 Score=57.43 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 006580 483 EEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYA 560 (640)
Q Consensus 483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 560 (640)
...+..+...+...|++++|++.+++.. ..| +...+..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456666677777777777777777765 333 66778888888888888888888888888888888888888888776
Q ss_pred hcC
Q 006580 561 MRG 563 (640)
Q Consensus 561 ~~g 563 (640)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=8.8e-05 Score=74.54 Aligned_cols=159 Identities=11% Similarity=-0.052 Sum_probs=121.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 006580 419 MMGLTQNGRAAETLDVFEELLEEGLPPD----------------RITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482 (640)
Q Consensus 419 i~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 482 (640)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4557788999999999999998532211 124778889999999999999999988765333333
Q ss_pred hh----HHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Q 006580 483 EE----HYACIIDLLCQAGQLGKAIDITSTMP-------FQP-GCSIWESILRASAIYGDVKLTENVAERMMDL------ 544 (640)
Q Consensus 483 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 544 (640)
.. ..+.+...+...|++++|.++++... ..+ -..++..+...+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 23334445566789999999887764 222 2567889999999999999999999998866
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 545 QLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 545 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
.+.....|..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 123346788999999999999999999988865
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4.8e-05 Score=74.24 Aligned_cols=113 Identities=9% Similarity=-0.001 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQP-GCSIWESILRASA 526 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 526 (640)
..+..+...+.+.|++++|+..|++..+.. +.. ......+++.+ ..| +..+|..+...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 346666677777888888888887766521 000 00011111111 123 4678899999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998754
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.00055 Score=64.58 Aligned_cols=186 Identities=10% Similarity=-0.018 Sum_probs=139.3
Q ss_pred HhcCChH-HHHHHHHhCCCC---ChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006580 392 AKTGSID-SSTEIFVKLDKR---DLVSWNTIMMGLTQNGR----------AAETLDVFEELLEEGLPPDRITLAAVLLAC 457 (640)
Q Consensus 392 ~~~g~~~-~A~~~~~~~~~~---~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 457 (640)
.+.|.++ +|+..++.+..- +...|+.--..+...++ +++++.+++.+.... +-+..+++.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455544 788888888743 33445543333332222 678999999998852 34556777766666
Q ss_pred hccC--CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc----
Q 006580 458 NYGG--FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ-LGKAIDITSTMP--FQPGCSIWESILRASAIY---- 528 (640)
Q Consensus 458 ~~~~--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---- 528 (640)
.+.+ .+++++.+++.+.+. -+-|...|+.-..++...|. ++++++.++++. .+-|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 6666 589999999999975 34567778877778888888 589999998887 444889999888777665
Q ss_pred ----------CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCC
Q 006580 529 ----------GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR-----------GRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 529 ----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~ 580 (640)
+.++++++.+.+++..+|.|..+|+-+...+.+. +.++++++.++++.+..+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4588999999999999999999999888787776 568899999999987653
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=2e-05 Score=62.18 Aligned_cols=79 Identities=6% Similarity=-0.030 Sum_probs=67.2
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 501 KAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 501 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+|++.+++.. ..| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555543 344 67889999999999999999999999999999999999999999999999999999999988764
Q ss_pred C
Q 006580 579 G 579 (640)
Q Consensus 579 ~ 579 (640)
.
T Consensus 83 ~ 83 (115)
T 2kat_A 83 A 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=7.5e-05 Score=75.41 Aligned_cols=65 Identities=5% Similarity=-0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 515 CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999999999999999999999999998865
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=2e-05 Score=64.86 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-C-------CCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMP-F-------QPG-CSIW----ESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|+++++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 55556666666666666666665554 4 774 5578 899999999999999999999999999977665
Q ss_pred HHHH
Q 006580 552 YSLL 555 (640)
Q Consensus 552 ~~~l 555 (640)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=1e-05 Score=66.43 Aligned_cols=87 Identities=5% Similarity=-0.097 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 006580 494 CQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGD----------VKLTENVAERMMDLQLPSPLPYSLLTQAYAM 561 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 561 (640)
.+.+++++|.+.++... ..| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34455667777666665 344 66677777777766654 5699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCCC
Q 006580 562 RG-----------RWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 562 ~g-----------~~~~a~~~~~~m~~~~~ 580 (640)
.| ++++|++.|++..+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 75 89999999999988653
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.90 E-value=9.9e-05 Score=55.14 Aligned_cols=70 Identities=7% Similarity=0.007 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006580 512 QPGCSIWESILRASAIYGD---VKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 581 (640)
++++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3478888888888865554 799999999999999999999999999999999999999999999987654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=4.5e-05 Score=76.79 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=88.1
Q ss_pred HHHHhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCh---hHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP------FQPG----CSIWESILRASAIYGDVKLTENVAERMMDL-----QLPSP---LPY 552 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 552 (640)
..+...|++++|+.++++.. ..|+ ..+++.|..+|..+|++++|+.+++++++. +|+++ ..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999998887764 2332 457899999999999999999999999877 55554 568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEME 623 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 623 (640)
+.|+.+|..+|++++|+.++++..+--. ..-...||...++..++.+...+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876321 1123478888777777666655444
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00023 Score=58.17 Aligned_cols=111 Identities=8% Similarity=-0.152 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 006580 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENV 537 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 537 (640)
++++|+..|++..+. + .|... |...|...+.+++|.+.|++.....++..+..|...|.. .+|+++|..+
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345555555555443 3 11111 444444445555555555554423455566666666665 6677788888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 006580 538 AERMMDLQLPSPLPYSLLTQAYAM----RGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 538 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 580 (640)
++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887766 456777778888877 7788888888888877764
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.75 E-value=6.2e-05 Score=74.67 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=87.3
Q ss_pred HHHHhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCh---hHH
Q 006580 491 DLLCQAGQLGKAIDITSTMP------FQPG----CSIWESILRASAIYGDVKLTENVAERMMDL-----QLPSP---LPY 552 (640)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 552 (640)
..+.+.|++++|++++++.. ..|+ ..+++.|+.+|...|++++|+.+++++++. +|.++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34556677777777776542 2332 457888999999999999999999999876 44444 568
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 006580 553 SLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCSWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMED 624 (640)
Q Consensus 553 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 624 (640)
+.|+.+|..+|++++|+.++++..+--. ..-...||...++...+.+...+|+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999998876321 11245789888888888888777763
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00012 Score=56.95 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...|..+...+...|++++|...++++++.+|.++..+..++.+|...|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998765
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.0012 Score=68.25 Aligned_cols=151 Identities=6% Similarity=-0.034 Sum_probs=123.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 006580 425 NGRAAETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGF----------VDKGMLVFSAMKEEYGVMPGEEHYACIIDLL 493 (640)
Q Consensus 425 ~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 493 (640)
....++|++.++++.. +.|+.. .|+.--.++...|+ ++++++.++.+.+. -+-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3446788999999998 466654 55555555555566 89999999999874 344667788888888
Q ss_pred HhcC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc------
Q 006580 494 CQAG--QLGKAIDITSTMP--FQPGCSIWESILRASAIYG-DVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR------ 562 (640)
Q Consensus 494 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 562 (640)
.+.| +++++++.++++. .+.+..+|+.-.......| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 7799999999987 4448999999999999999 899999999999999999999999999888774
Q ss_pred --------CChHHHHHHHHHHHhCC
Q 006580 563 --------GRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 563 --------g~~~~a~~~~~~m~~~~ 579 (640)
+.++++.+.+++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 56788998888887644
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=6e-05 Score=61.91 Aligned_cols=88 Identities=11% Similarity=0.001 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc-
Q 006580 462 FVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQ----------LGKAIDITSTMP-FQP-GCSIWESILRASAIY- 528 (640)
Q Consensus 462 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~- 528 (640)
.+++|++.++...+. -+.+...|..+..++...++ +++|+..|++.. +.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 445555555555442 12234445555555554443 357777777766 455 566777888887766
Q ss_pred ----------CChHHHHHHHHHHHhcCCCChhH
Q 006580 529 ----------GDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 529 ----------~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
|++++|+..|+++++++|.+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 48999999999999999988544
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00035 Score=54.84 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=54.5
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006580 466 GMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMD 543 (640)
Q Consensus 466 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 543 (640)
|+..|++..+. .+.+...+..+...|...|++++|++.+++.. ..| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555432 23345566667777777777777777777665 333 567788888888888888888888888888
Q ss_pred cCC
Q 006580 544 LQL 546 (640)
Q Consensus 544 ~~p 546 (640)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 766
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00029 Score=52.33 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+...+..+...+...|++++|...++++++.+|.++..+..++.++...|++++|...+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788889999999999999999999999999999999999999999999999999999998754
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.55 E-value=0.00058 Score=55.37 Aligned_cols=91 Identities=11% Similarity=-0.001 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCce
Q 006580 512 QPGCSIWESILRASAIYG---DVKLTENVAERMMDLQ-L-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 586 (640)
.++..+...+..++.+.+ +.++++.+++.+++.+ | .+..++..|+-+|.+.|++++|+++++.+.+..
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie------- 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------- 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 456777777777777776 5668888888888877 5 456777788888888888888888888887743
Q ss_pred eeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 006580 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628 (640)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 628 (640)
|+..++....+.+.+.++++|.+
T Consensus 102 -------------------P~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 102 -------------------PQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence 33445555555667777777643
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00043 Score=52.73 Aligned_cols=65 Identities=3% Similarity=-0.027 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 006580 482 GEEHYACIIDLLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 546 (640)
+...+..+..+|.+.|++++|++.|+++. ..| +...|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 45566677777777777777777777765 334 566788888888888888888888888877754
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.44 E-value=0.00026 Score=69.99 Aligned_cols=83 Identities=10% Similarity=-0.031 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHhCC------CCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCh---hHHHHHHH
Q 006580 496 AGQLGKAIDITSTMP------FQP---G-CSIWESILRASAIYGDVKLTENVAERMMDL-----QLPSP---LPYSLLTQ 557 (640)
Q Consensus 496 ~g~~~~A~~~~~~~~------~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 557 (640)
.|++++|+.++++.. ..| + ..+++.|..+|...|++++|+.+++++++. +|+++ ..|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356666666665542 223 2 357888999999999999999999999876 45444 56889999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 006580 558 AYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 558 ~~~~~g~~~~a~~~~~~m~~~ 578 (640)
+|..+|++++|+.++++..+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.42 E-value=0.022 Score=44.16 Aligned_cols=141 Identities=10% Similarity=0.027 Sum_probs=106.9
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 006580 422 LTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK 501 (640)
Q Consensus 422 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 501 (640)
+.-.|..++..++..+..+. .+..-|+.++-.....-+-+-..++++.+-+-+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 44578889999999888773 355667777766667777788888888776544433 3445554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 006580 502 AIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGIN 581 (640)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 581 (640)
...-+-.+ ..+....+..+.....+|+-+.-..++..++..+++++.....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 2344556777788889999999999999988888999999999999999999999999999999999974
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0027 Score=51.69 Aligned_cols=112 Identities=13% Similarity=-0.089 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 006580 426 GRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQ----AGQLGK 501 (640)
Q Consensus 426 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 501 (640)
+++++|++.|++..+.| .|+.. +...|...+.+++|++.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999987 44444 666777778899999999988775 466778888888888 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 006580 502 AIDITSTMPFQPGCSIWESILRASAI----YGDVKLTENVAERMMDLQL 546 (640)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 546 (640)
|.+.|++.....++..+..|...|.. .+|.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988745678888899999988 8899999999999998854
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.35 E-value=0.00014 Score=69.93 Aligned_cols=253 Identities=11% Similarity=0.051 Sum_probs=135.0
Q ss_pred hhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCC
Q 006580 50 TYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPE--PDVVSWNSMISGYASCGY 127 (640)
Q Consensus 50 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~y~~li~~~~~~~~ 127 (640)
+.+|..|..+....+++.+|++-|=+ ..|+..|..++.+..+.|.+++-++.+...++ .++..=+.|+-+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 34455565555555555555443322 24455555666666666666666666555543 344444556666666665
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCC------CCchhHHHHHHHhhhcCCChHHHHH
Q 006580 128 SDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLS------LSNVVLGNSLIDMYGKLGVLYYAFG 201 (640)
Q Consensus 128 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 201 (640)
..+..+++. .||..-...+ =+...+.|.+ -.+..-|..|...+.+.|++..|.+
T Consensus 132 L~elEefl~-------~~N~A~iq~V-------------GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQV-------------GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHH-------------HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTT
T ss_pred HHHHHHHHc-------CCCcccHHHH-------------HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 443222211 1211111000 0011111100 0111222233334444444444333
Q ss_pred HHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch
Q 006580 202 VFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281 (640)
Q Consensus 202 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 281 (640)
.-+. ..++.+|-.+-.+|...+.+..|.-.--.+.- .......++..|...|.+++-..+++.-+... ....
T Consensus 192 aArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHm 263 (624)
T 3lvg_A 192 GARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHM 263 (624)
T ss_dssp TTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCH
T ss_pred HHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhH
Confidence 2111 24678899999999999998877555443332 12223345667788888888888887665321 3466
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhhHHHHHHHHHhCCChHHHHH
Q 006580 282 IVLSATIDLFSKCNRLEDSVRLFEQLDR----W-------DYAVINVMISTYGRYGFGEVALE 333 (640)
Q Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~ 333 (640)
.+|+.|.-.|+|- +.++..+.++..-. | ....|..++-.|++..+++.|..
T Consensus 264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7888888888775 56666666654432 1 34468888888888888886653
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.27 E-value=0.0009 Score=50.68 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006580 524 ASAIYGDVKLTENVAERMMDLQLPSPL-PYSLLTQAYAMRGRWEAIVRVKKVMRKN 578 (640)
Q Consensus 524 ~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 578 (640)
.+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555555555555 5555555555555555555555555443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0025 Score=48.12 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=60.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 006580 489 IIDLLCQAGQLGKAIDITSTMP-FQP-GCS-IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRW 565 (640)
Q Consensus 489 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 565 (640)
....+.+.|++++|.+.++++. ..| +.. .|..+...+...|++++|...++++++.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3556778888888888888876 344 667 88889999999999999999999999999988877632 455
Q ss_pred HHHHHHHHHH
Q 006580 566 EAIVRVKKVM 575 (640)
Q Consensus 566 ~~a~~~~~~m 575 (640)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5565555433
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.014 Score=55.32 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=71.9
Q ss_pred CChhHHHHHHHHHH--hCCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh
Q 006580 410 RDLVSWNTIMMGLT--QNGR---AAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483 (640)
Q Consensus 410 ~~~~~~~~li~~~~--~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 483 (640)
.+...|...+.+.. ..++ ..+|..+|++..+ ..|+. ..+..+..++.- . ... + ..+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~---~~~-~-~~~~ 254 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R---HSQ-H-PLDE 254 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H---HHH-S-CCCH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H---hcc-C-CCch
Confidence 46667777766543 3333 5788999999998 46764 345444444430 0 000 1 0000
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMR 562 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 562 (640)
..... ...+.+....+. .+.++.++..+...+...|++++|...++++++++| +...|..+++++.-.
T Consensus 255 ~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~ 323 (372)
T 3ly7_A 255 KQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMK 323 (372)
T ss_dssp HHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHT
T ss_pred hhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHC
Confidence 00000 012222112222 233555555555555555666666666666666663 345555666666666
Q ss_pred CChHHHHHHHHHHHhCC
Q 006580 563 GRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 563 g~~~~a~~~~~~m~~~~ 579 (640)
|++++|.+.+++....+
T Consensus 324 G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 324 GMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 66666666666555543
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.10 E-value=0.00013 Score=70.18 Aligned_cols=236 Identities=11% Similarity=0.017 Sum_probs=161.9
Q ss_pred chhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 006580 179 NVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTK 258 (640)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 258 (640)
.+.+|..|..++.+.|.+.+|.+.|-. ..|...|..+|.+..+.|.+++-+..+...++..-.|. .=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 566788888999999988888776533 45777899999999999999999999888776543343 34578889999
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhh
Q 006580 259 LRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDR------------------------WDYAV 314 (640)
Q Consensus 259 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 314 (640)
.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 998877655542 46776677788888888888888888777642 36778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 006580 315 INVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK 393 (640)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 393 (640)
|-.+-.+|...+.+.-|--.--.+. +.||. +..++..+-. |-+++-..+++.-... -......|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 9999999998888776554333332 12221 1233444555 7777766666655521 13456667777777776
Q ss_pred cCChHHHHHHHHhCCC----C-------ChhHHHHHHHHHHhCCChHHHH
Q 006580 394 TGSIDSSTEIFVKLDK----R-------DLVSWNTIMMGLTQNGRAAETL 432 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~ 432 (640)
- ++++..+.++.... | ....|.-++-.|++..+++.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 4 45666666554432 1 3456777777787777777665
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0055 Score=60.54 Aligned_cols=94 Identities=7% Similarity=0.001 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 006580 459 YGGFVDKGMLVFSAMKEEY--GVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP---------FQPG-CSIWESIL 522 (640)
Q Consensus 459 ~~~~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 522 (640)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777776655421 12222 3466777777777777777777776654 2333 34788999
Q ss_pred HHHHHcCChHHHHHHHHHHHhc-----CCCChhHH
Q 006580 523 RASAIYGDVKLTENVAERMMDL-----QLPSPLPY 552 (640)
Q Consensus 523 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 552 (640)
..|..+|++++|+.++++++++ +|+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999877 67776543
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.94 E-value=0.0078 Score=46.82 Aligned_cols=90 Identities=9% Similarity=-0.075 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCce
Q 006580 512 QPGCSIWESILRASAIYGDVKL---TENVAERMMDLQ-L-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGC 586 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 586 (640)
.++..+-..+.+++.+.++... ++.+++.+...+ | ........|+-++.+.|+|++|.+.++.+.+..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e------- 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------- 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------
Confidence 4566666666666666654444 777777777665 4 355566677778888888888888888777633
Q ss_pred eeEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 006580 587 SWIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGC 627 (640)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 627 (640)
|...++.+.-..+.++|.++|+
T Consensus 105 -------------------P~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 105 -------------------PQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHC--
T ss_pred -------------------CCCHHHHHHHHHHHHHHHhccC
Confidence 4444555555556777777663
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.93 E-value=0.0096 Score=58.92 Aligned_cols=97 Identities=10% Similarity=-0.035 Sum_probs=62.2
Q ss_pred HhccCCHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHH
Q 006580 457 CNYGGFVDKGMLVFSAMKEEY--GVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP---------FQPG-CSIWES 520 (640)
Q Consensus 457 ~~~~~~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 520 (640)
+.+.|++++|+..+++..+.. -+.|+ ..+++.|..+|...|++++|+.+++++. ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666666554321 11121 3356666666666777777666666553 2332 346888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc-----CCCChhHHH
Q 006580 521 ILRASAIYGDVKLTENVAERMMDL-----QLPSPLPYS 553 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~ 553 (640)
|...|..+|++++|+.++++++++ +|+++.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 899999999999999999999876 777765543
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.83 E-value=0.014 Score=55.33 Aligned_cols=39 Identities=5% Similarity=-0.013 Sum_probs=34.7
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 541 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
.+..+|.++.+|..++..+...|++++|...++++...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 335689999999999998888999999999999999876
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.82 E-value=0.0054 Score=55.52 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=72.1
Q ss_pred hHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHhc-CChHH
Q 006580 499 LGKAIDITSTMP-FQPG---CSIWESILRASAI-----YGDVKLTENVAERMMDLQLP-SPLPYSLLTQAYAMR-GRWEA 567 (640)
Q Consensus 499 ~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 567 (640)
..+|...+++.. ..|+ ...|..|...|.. -|+.++|.++|+++++++|. +...+..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 356666666655 5665 5678888888888 49999999999999999996 499999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 006580 568 IVRVKKVMRKNGINKVTG 585 (640)
Q Consensus 568 a~~~~~~m~~~~~~~~~~ 585 (640)
|.+.+++........+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999987765554
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.12 Score=56.30 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=66.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 006580 389 EMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGML 468 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~ 468 (640)
......|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34566788888888877664 457888899999999999999998887754 2334444445666666555
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006580 469 VFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509 (640)
Q Consensus 469 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (640)
+-+..... | .++.-..+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54444332 2 1233344566677777776666544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.016 Score=44.19 Aligned_cols=71 Identities=8% Similarity=-0.023 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 486 YACIIDLLCQAGQLGKAIDITSTMP---------FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 486 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
...|...+.+.|++..|...++.+. ..+...++..|..++.+.|+++.|...+++++++.|.++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3344455555555555555554432 0234667888999999999999999999999999999887766653
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.51 E-value=0.11 Score=41.20 Aligned_cols=91 Identities=8% Similarity=-0.020 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcee
Q 006580 512 QPGCSIWESILRASAIYG---DVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 587 (640)
.|+..+--.+.+++.+.. +..+++.+++.+....| ........|+-++.+.|+|++|+++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 466777777777777765 45678888888888877 445666778889999999999999999888743
Q ss_pred eEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 006580 588 WIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEGCV 628 (640)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 628 (640)
|...++.+.-..+.++|+++|.+
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 44556666666678888888754
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.48 E-value=0.022 Score=42.19 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 480 MPGEEHYACIIDLLCQAGQ---LGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 480 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
+.++..+..+..++...++ .++|..++++.. ..| ++..+..+...+...|++++|...++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566777777777765544 689999998887 555 77888889999999999999999999999999873
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.35 E-value=0.019 Score=46.45 Aligned_cols=73 Identities=4% Similarity=-0.102 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 006580 481 PGEEHYACIIDLLCQAG---QLGKAIDITSTMP-FQ-P--GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYS 553 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 553 (640)
++..+...+..++.+++ +.++++.++++.. .. | +...+-.|.-+|.+.|++++|.+.++++++.+|.|..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 45555555566666655 4446666665554 22 3 2455667777889999999999999999999998865544
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.15 Score=55.53 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=70.9
Q ss_pred hhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 006580 190 YGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVF 269 (640)
Q Consensus 190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 269 (640)
....|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445688888888877764 456788889999999999999999988754 444555555677777766666
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006580 270 ALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308 (640)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 308 (640)
+.....|. ++.-..+|.+.|++++|++++.++.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 65555542 3344455667778888777765543
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.03 E-value=0.036 Score=42.11 Aligned_cols=66 Identities=12% Similarity=0.007 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 514 GCSIWESILRASAIYGDVKLTENVAERMMDLQ-------LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+..-+..++..+...++++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45556788899999999999999999999862 3456789999999999999999999999998754
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.95 E-value=0.059 Score=42.02 Aligned_cols=89 Identities=8% Similarity=-0.008 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcee
Q 006580 512 QPGCSIWESILRASAIYG---DVKLTENVAERMMDLQL-PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKVTGCS 587 (640)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 587 (640)
.|++.+--.+.+++.+.. +..+++.+++.+...+| .....+..|+-++.+.|++++|+++.+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e-------- 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------
Confidence 456666666777777665 45578888888888777 346677788889999999999999998888743
Q ss_pred eEEecCEEEEEecCCCCCCChHHHHHHHHHHHHHHHHcC
Q 006580 588 WIGIKNRIYTFNAGELQHHGGQKIYLVLRLLTWEMEDEG 626 (640)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 626 (640)
|+..++.+.-..+.++|+++|
T Consensus 109 ------------------P~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 109 ------------------RNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHHHhhc
Confidence 445566666566777777665
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.65 Score=38.62 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=28.9
Q ss_pred HHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 390 MYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELL 439 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 439 (640)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344566666666665554 345566666666666666666666665554
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.58 Score=38.93 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=90.9
Q ss_pred hhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHH
Q 006580 189 MYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQV 268 (640)
Q Consensus 189 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 268 (640)
.....|+++.|.++.+.+ .+...|..|.......|+++-|...|.+..+ +..+.-.|...|+.++..++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678999999998877 3567899999999999999999999998865 45555566677888877777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006580 269 FALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLM 338 (640)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 338 (640)
-+.....|- ++.....+.-.|+++++.++|.+..+.... .......|..+.|.++...+
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 666655552 445555677789999999988776552211 11122255667777776655
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.06 Score=56.55 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=51.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 520 SILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 520 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
.-...|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33456778899999999999999999999999999999999999999999999877
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.44 E-value=0.12 Score=41.30 Aligned_cols=52 Identities=6% Similarity=-0.103 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006580 529 GDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGI 580 (640)
Q Consensus 529 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 580 (640)
+|.++|.++|+.++.....-+..|...+..-.++|+.+.|.+++.+....+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5667777777777666444455666666666667777777777777666554
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.01 E-value=3.8 Score=42.24 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 006580 427 RAAETLDVFEELLEEG-LPPDRI--TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAI 503 (640)
Q Consensus 427 ~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 503 (640)
+.+.|...|......+ +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5666776666665432 222211 1222222333334234444444443321 223222333333334557777777
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 006580 504 DITSTMPFQP-G-CSIWESILRASAIYGDVKLTENVAERMMD 543 (640)
Q Consensus 504 ~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 543 (640)
..|+.+...+ + ....-=+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777665221 1 21111123344556777777777766654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.99 E-value=0.24 Score=38.46 Aligned_cols=87 Identities=7% Similarity=-0.097 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCChHHHHHH
Q 006580 465 KGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGK---AIDITSTMP-FQ-P--GCSIWESILRASAIYGDVKLTENV 537 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~a~~~ 537 (640)
.+.+-|...... +. |+..+-..+..++.++.+... ++.++++.. .. | .....-.|.-++.+.|++++|.+.
T Consensus 19 ~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444332 22 555665566666666665544 666666655 22 3 233455677788899999999999
Q ss_pred HHHHHhcCCCChhHHH
Q 006580 538 AERMMDLQLPSPLPYS 553 (640)
Q Consensus 538 ~~~~~~~~p~~~~~~~ 553 (640)
++.+++.+|.|..+..
T Consensus 97 ~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 9999999998876544
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.92 E-value=2.3 Score=39.32 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHH----HH
Q 006580 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQ----FY 235 (640)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~ 235 (640)
+++..+-++.-++.|.+-.-..+|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 3334444444455553333445677888889999999999998643 34556777887666654 55
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCCch-HHHHHHHHHHHh----C--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006580 236 SMRYSGYSPDEYTISIVINACTKLRNLD-KGKQVFALSVKV----G--FLSNSIVLSATIDLFSKCNRLEDSVRLFEQLD 308 (640)
Q Consensus 236 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 308 (640)
...+.+++++......++..+.....-+ .-.++++.+++. | ..-++.....+...|.+.|++.+|...|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788999888888887776643222 234455555443 2 22367788889999999999999998876333
Q ss_pred CCChhhHHHHHH
Q 006580 309 RWDYAVINVMIS 320 (640)
Q Consensus 309 ~~~~~~~~~li~ 320 (640)
..+...+..++.
T Consensus 162 ~~s~~~~a~~l~ 173 (312)
T 2wpv_A 162 HDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 224444444443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.42 E-value=6.6 Score=42.31 Aligned_cols=264 Identities=11% Similarity=0.009 Sum_probs=129.9
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhhHHHHHHH
Q 006580 255 ACTKLRNLDKGKQVFALSVKVGFLSN--SIVLSATIDLFSKCNRLEDSVRLFEQLDR-WD----------YAVINVMIST 321 (640)
Q Consensus 255 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~ 321 (640)
+....|+.+++..++...+..+-..+ ...-..+.-+...+|..+++..++..... .+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34567777777777655443210112 23334444556666766667766655432 22 1112223333
Q ss_pred HHhCCC-hHHHHHHHHHHhhCCCCCChhh-HHHHHhh--CCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHhc
Q 006580 322 YGRYGF-GEVALELFQLMLREDIRPTEFT-LSCVLSS--IPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLME--MYAKT 394 (640)
Q Consensus 322 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~t-~~~~l~~--~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 394 (640)
++-.|. -+++.+.+..+....- + ... ...+--+ +.. |+.+....++..+.+.. +..+...+.- ++.-.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-A-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-H-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-H-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 333333 2456666666554321 1 111 1111111 223 67777777777666532 2223333333 33356
Q ss_pred CChHHHHHHHHhCC-CCChh-HHH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 006580 395 GSIDSSTEIFVKLD-KRDLV-SWN---TIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLV 469 (640)
Q Consensus 395 g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~ 469 (640)
|+.+.+..+.+.+. ..+.. -|. ++.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 77777766666655 22322 222 2344566778877666688888764 122333333333344445565556666
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006580 470 FSAMKEEYGVMPGEEHYACIIDLLCQAGQL-GKAIDITSTMPFQPGCSIWESILRASA 526 (640)
Q Consensus 470 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~ 526 (640)
++.+.+ ...|....-..+.-+....|.. .++++.+..+...+|..+-...+.++.
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 665544 2234443333444444444443 577777777765666555444444443
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.20 E-value=0.46 Score=37.94 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=43.6
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 497 GQLGKAIDITSTMP--FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 497 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
+++++|.++|+.+. .+.=..+|-.....-.++|+++.|..++.+++...|.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 56666666666553 1222667777888888999999999999999999987766655544
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.86 E-value=0.16 Score=45.97 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHh-----cCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCC
Q 006580 484 EHYACIIDLLCQ-----AGQLGKAIDITSTMP-FQP--GCSIWESILRASAIY-GDVKLTENVAERMMDLQLP 547 (640)
Q Consensus 484 ~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~ 547 (640)
..|..|...|.+ -|+.++|.+.|++.. +.| +..++......++.. |+.+++.+.+++++...|.
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 355566666665 366666666666665 455 255666666666663 7777777777777777553
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.82 E-value=4.1 Score=37.64 Aligned_cols=177 Identities=10% Similarity=0.091 Sum_probs=102.4
Q ss_pred HccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHH----HH
Q 006580 61 SRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEM----FS 136 (640)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~----~~ 136 (640)
...|++-+|.+.++ ++..-|.+++++++|++++. .-...+.+.|+...|.++ ++
T Consensus 24 I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHH
Confidence 34456656555544 34556667777777777642 233445566776665554 55
Q ss_pred HHHHCCCCCChhhHHHHHHHHh--------chhHHHHHHHHHHHhCC-CCCchhHHHHHHHhhhcCCChHHHHHHHhccC
Q 006580 137 KMQLQGVRPSGFTFSILLSTVS--------SACHGKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNME 207 (640)
Q Consensus 137 ~m~~~g~~p~~~t~~~ll~~~~--------~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 207 (640)
...+.+++++......++..+. +..-......+-.+.|. ...++.....+...|.+.|++.+|...|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788888877777776665 22333444444444432 23478888999999999999999988775322
Q ss_pred CCCeeeHHHHHHHHHhc---CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 006580 208 ELDIISWNSLISGCFNS---GYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274 (640)
Q Consensus 208 ~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (640)
..|...+..++--+... |...++--++ -..++ .+...+++..|..+++...+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22344444444333333 3332221111 11122 34456788888888776653
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.07 E-value=3.4 Score=40.81 Aligned_cols=182 Identities=11% Similarity=0.143 Sum_probs=117.7
Q ss_pred cCChHHHHHHHHhCCC---------CChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----hc
Q 006580 394 TGSIDSSTEIFVKLDK---------RDLVSWNTIMMGLTQNGRAAETLDVFEELLE-EGLPPDRITLAAVLLAC----NY 459 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~----~~ 459 (640)
.|+++.|.+.+..+.+ ........++..|...|+++...+.+.-+.. +|..+... ..+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhc
Confidence 3678888887755541 2344677788999999999999888876665 34333332 2333322 22
Q ss_pred cCCHH--HHHHHHHHhHHhh--CCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCC-C----HHHHHHHHHH
Q 006580 460 GGFVD--KGMLVFSAMKEEY--GVMP---GEEHYACIIDLLCQAGQLGKAIDITSTMP---FQP-G----CSIWESILRA 524 (640)
Q Consensus 460 ~~~~~--~A~~~~~~~~~~~--~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~----~~~~~~l~~~ 524 (640)
....+ .-..+.+.+.... .+-. .......|...+...|++.+|.+++..+. ... + ...+..-+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23222 2222222211100 1111 12334668899999999999999999876 222 2 3466777888
Q ss_pred HHHcCChHHHHHHHHHHHhc---CCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 525 SAIYGDVKLTENVAERMMDL---QLPSP----LPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 525 ~~~~~~~~~a~~~~~~~~~~---~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
|...+|+.+|..++.++... .++++ ..|...+..+...++|.+|-+.|.++.+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999998532 33333 4677888899999999999988777743
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.00 E-value=5.8 Score=36.92 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=106.2
Q ss_pred HHHccCCc---hHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 006580 59 LYSRFGTS---DDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSDYALEMF 135 (640)
Q Consensus 59 ~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~~a~~~~ 135 (640)
.....|++ -+|.+.++. +..-|.+++++++|++++ ..-...+.+.|+...+.++-
T Consensus 21 ~~I~~G~y~~~YEAHQ~~RT-----------i~~Ry~~~k~y~eAidLL-----------~~GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETRL-----------VAARYSKQGNWAAAVDIL-----------ASVSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHHH-----------HHHHHHhhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHHH
Confidence 34456777 666655544 456678889999999875 22344566677777665554
Q ss_pred ----HHHHHCCCCCChhhHHHHHHHHh--------chhHHHHHHHHHHHhCC-CCCchhHHHHHHHhhhcCCChHHHHHH
Q 006580 136 ----SKMQLQGVRPSGFTFSILLSTVS--------SACHGKQIHGSMIRSGL-SLSNVVLGNSLIDMYGKLGVLYYAFGV 202 (640)
Q Consensus 136 ----~~m~~~g~~p~~~t~~~ll~~~~--------~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 202 (640)
+-..+.++++|..+...++..+. +..-..+...+-.+.|. ...|+.....+...|.+.+++.+|...
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55566788899888877777776 12223334444444331 234778888889999999999999888
Q ss_pred HhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 006580 203 FLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVK 274 (640)
Q Consensus 203 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (640)
|-.-..++...+..++-.+...+...++ |...-..++ -|...+++..|..+++...+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 7432222224454444333333322211 111122222 34456778888777665554
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.43 E-value=14 Score=39.91 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=130.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCC----Chh--hHHHHHHHHHhCCChHHHHHHHHHHhhCCC--CC----ChhhHHHHH---
Q 006580 290 LFSKCNRLEDSVRLFEQLDRW----DYA--VINVMISTYGRYGFGEVALELFQLMLREDI--RP----TEFTLSCVL--- 354 (640)
Q Consensus 290 ~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p----~~~t~~~~l--- 354 (640)
+....|+.++++.+++..... +.. .-..+.-+....|..+++..++.......- .- ......+.+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 466778888888888876541 211 223344556666766678887777654321 00 111111111
Q ss_pred hhCCC-CChHHHHHHHHHHHHhCCCCchH--HHHHHHHHHHhcCChHHHHHHHHhCCC-CChh--HHHHHHHHHHhCCCh
Q 006580 355 SSIPI-PPVEHGSQFHSMAIKSGFDSNAV--VASSLMEMYAKTGSIDSSTEIFVKLDK-RDLV--SWNTIMMGLTQNGRA 428 (640)
Q Consensus 355 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~ 428 (640)
-++.. ++ +.+...+..+....- +... ..-+|...++-.|+.+....++..+.. .+.. -.-.+.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 11222 33 344444444443221 1111 112333445566777777777665442 2222 223333445578999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006580 429 AETLDVFEELLEEGLPPDRITLA---AVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLGKAIDI 505 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 505 (640)
+.+..+++.+... -.|-. -|. .+.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999998888873 12322 232 3345678889988777788888763 222333333333344556776666677
Q ss_pred HHhCCCCCCHHHHHH--HHHHHHHcCC-hHHHHHHHHHHHh
Q 006580 506 TSTMPFQPGCSIWES--ILRASAIYGD-VKLTENVAERMMD 543 (640)
Q Consensus 506 ~~~~~~~~~~~~~~~--l~~~~~~~~~-~~~a~~~~~~~~~ 543 (640)
++.+....|+.+-.. +..+....|+ ..++...+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665542334443333 3333333443 3567777777753
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.27 E-value=3.3 Score=32.36 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEE 476 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 476 (640)
....+..+...|+-++-.+++..+... -+|++.....+..||.+.|+..+|.+++.+..++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344455555666666666666664332 3555665666666666666666666666666554
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.67 E-value=14 Score=38.18 Aligned_cols=384 Identities=11% Similarity=0.013 Sum_probs=198.2
Q ss_pred CCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 006580 176 SLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINA 255 (640)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 255 (640)
.|......+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+=..| ......+..++..
T Consensus 68 ~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~ 145 (618)
T 1qsa_A 68 LPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSV 145 (618)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHH
Confidence 444445556667777788888888887766 33355555556777888888877877777664444 3445567777777
Q ss_pred HhccCCchH--HHHHHHHHHHhC-----------CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHH
Q 006580 256 CTKLRNLDK--GKQVFALSVKVG-----------FLSNSI-VLSATIDLFSKCNRLEDSVRLFEQLDRWDYA---VINVM 318 (640)
Q Consensus 256 ~~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l 318 (640)
+.+.|.+.. ..+-+..+...| ++++.. ....++..+. +...+........ ++.. .+...
T Consensus 146 ~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~ 221 (618)
T 1qsa_A 146 WRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTTG-ATDFTRQMAAVA 221 (618)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHSC-CCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhccC-CChhhHHHHHHH
Confidence 776665433 222222233222 111111 1111221111 1122222222211 1111 11112
Q ss_pred HHHHHhCCChHHHHHHHHHHhhCC-CCCChh--hHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 006580 319 ISTYGRYGFGEVALELFQLMLRED-IRPTEF--TLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKT 394 (640)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 394 (640)
+.-+.+ .+.+.|...+....+.. ..+... ....+...... +....+...+...... ..+.....-.+....+.
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHC
Confidence 333333 37789999998886543 222221 12223333444 5355555555554433 23333445555666688
Q ss_pred CChHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 006580 395 GSIDSSTEIFVKLDKRD---LVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFS 471 (640)
Q Consensus 395 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~ 471 (640)
|+++.|...|..|.... ....-=+..++...|+.++|..+|..+... .+ .|..+.. .+.|..-.
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~------ 365 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE------ 365 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC------
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC------
Confidence 99999999999998432 222333556777889999999999998752 22 2333322 12221000
Q ss_pred HhHHhhCCCCC-h-----hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 006580 472 AMKEEYGVMPG-E-----EHYACIIDLLCQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ 545 (640)
Q Consensus 472 ~~~~~~~~~p~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 545 (640)
+ ......+. . ..-..-+..+...|....|...+.......+......+.......|..+.+.....+....+
T Consensus 366 -~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~ 443 (618)
T 1qsa_A 366 -L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWD 443 (618)
T ss_dssp -C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred -C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhc
Confidence 0 00000010 0 01122345677889999998877765433444444555555667788888776665443322
Q ss_pred C---CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 546 L---PSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 546 p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
. .-|..|..++.-+.+.-.++..+-.---..+.+..|.
T Consensus 444 ~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 444 HLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp CHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred chhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 1 1122355566566655555554433222334444443
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.18 E-value=1.2 Score=36.31 Aligned_cols=123 Identities=11% Similarity=0.000 Sum_probs=61.9
Q ss_pred CCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006580 441 EGLPPDRI--TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE-------EHYACIIDLLCQAGQLGKAIDITSTMP- 510 (640)
Q Consensus 441 ~g~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 510 (640)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|+...
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556543 33444566677788888877777655443333431 245556677777777777777776643
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 511 ----FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 511 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
..........+. ....... -.. .+.+...-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111110000 0000000 000 1223355567999999999999999998754
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.04 E-value=0.8 Score=44.44 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCCc
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK-----NGINKVTG 585 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 585 (640)
....++.++...|+++++...+..++..+|-+...|..++.+|.+.|+..+|++.|+.+.+ .|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455667788899999999999999999999999999999999999999999999988754 47776653
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.76 E-value=17 Score=34.84 Aligned_cols=158 Identities=9% Similarity=0.004 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--------CChhHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHH-----
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDK--------RDLVSWNTIMMGLTQNG-RAAETLDVFEELLEEGLPPDRITL----- 450 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~----- 450 (640)
..|...|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+-. +-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4567777777777777777766652 12233445555554432 2233333333333210 0011122
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHH
Q 006580 451 -AAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG----EEHYACIIDLLCQAGQLGKAIDITSTMP-----FQPGCSIWES 520 (640)
Q Consensus 451 -~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 520 (640)
.-+...|...|++.+|.+++..+.+...-..+ .+.+..-+..|...+++.++...+.... +.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 14555666667777776666666654221111 2234444556666667666666665543 2233332221
Q ss_pred H----HHHHH-HcCChHHHHHHHHHHHh
Q 006580 521 I----LRASA-IYGDVKLTENVAERMMD 543 (640)
Q Consensus 521 l----~~~~~-~~~~~~~a~~~~~~~~~ 543 (640)
+ +-.+. ..+++..|...|-++.+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 22334 45666666666655543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.76 E-value=3.5 Score=33.63 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 484 EHYACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
+.--.+..+|.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445667777777777777777776
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.62 E-value=5.9 Score=41.77 Aligned_cols=54 Identities=15% Similarity=-0.081 Sum_probs=45.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHH
Q 006580 120 SGYASCGYSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYA 199 (640)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 199 (640)
..+...|+++.|+.+-++.... .|.+-.+|..|..+|...|+++.|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~----------------------------------aPseF~tW~~La~vYi~l~d~e~A 390 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL----------------------------------ALDSFESWYNLARCHIKKEEYEKA 390 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH----------------------------------CSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhc----------------------------------CchhhHHHHHHHHHHHHhccHHHH
Confidence 3455677777777777777654 778899999999999999999999
Q ss_pred HHHHhccC
Q 006580 200 FGVFLNME 207 (640)
Q Consensus 200 ~~~~~~~~ 207 (640)
+-.++.++
T Consensus 391 LLtLNScP 398 (754)
T 4gns_B 391 LFAINSMP 398 (754)
T ss_dssp HHHHHHSC
T ss_pred HHHHhcCC
Confidence 99999998
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.56 E-value=11 Score=33.54 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 421 GLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 421 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
...+.|+.++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455666777776666666642 33444555566666777777777766665554
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.26 E-value=6.9 Score=28.52 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 006580 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340 (640)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 340 (640)
.-++|..+-+.+...+- ...+-..-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655543 33333344556778899999999999999999999988755 366777888888777776
Q ss_pred CCCCCChhhH
Q 006580 341 EDIRPTEFTL 350 (640)
Q Consensus 341 ~~~~p~~~t~ 350 (640)
+| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444444
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.04 E-value=6.4 Score=28.62 Aligned_cols=86 Identities=7% Similarity=0.014 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhh
Q 006580 261 NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLR 340 (640)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 340 (640)
.-++|..+-+.+...+- ...+-..-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666655543 33333344556778899999999999999999999988754 467888888888878877
Q ss_pred CCCCCChhhHH
Q 006580 341 EDIRPTEFTLS 351 (640)
Q Consensus 341 ~~~~p~~~t~~ 351 (640)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.40 E-value=7.6 Score=30.75 Aligned_cols=73 Identities=4% Similarity=-0.066 Sum_probs=47.0
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 006580 480 MPGEEHYACIIDLLCQAGQL---GKAIDITSTMP-FQP--GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPY 552 (640)
Q Consensus 480 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 552 (640)
.|+..+--.+..++.++.+. .+++.++++.. ..| ....+-.|.-++.+.|++++|.++.+.+++.+|.|..+-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455544555555555533 24445555443 233 233555677788999999999999999999999886543
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.38 E-value=3.9 Score=31.92 Aligned_cols=71 Identities=4% Similarity=-0.047 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 006580 481 PGEEHYACIIDLLCQAGQL---GKAIDITSTMP-FQP--GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLP 551 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 551 (640)
|+..+--.+..++.++.+. .+++.+++++. ..| ....+-.|.-++.+.|+++.|.+..+.+++..|.|.-+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3334433444444444432 23444444433 223 23455566667778888888888888888888877544
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.86 E-value=6.1 Score=38.17 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hhCCCCChhHH
Q 006580 415 WNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE----EYGVMPGEEHY 486 (640)
Q Consensus 415 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~p~~~~~ 486 (640)
...++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566777888999998888888774 245777888888999999999999888887654 35888877654
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.51 E-value=4.2 Score=29.80 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 428 AAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 428 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
.-+..+-++.+....+.|++......+++|-+.+++..|+++++.++.+ ..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 4456666777777778899999999999999999999999999988775 3333456666654
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.02 E-value=9.2 Score=27.88 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHh
Q 006580 28 FKSFDFAKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVF 104 (640)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 104 (640)
....++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||..+|-.|-.+ +.|--+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 4456666666666666553 222222233344566666666666666666666665554442 334444444333
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.11 E-value=16 Score=32.88 Aligned_cols=115 Identities=6% Similarity=-0.091 Sum_probs=51.8
Q ss_pred HHHHhhhcCCChHHHHHHHhccCCCCee---eHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhcc
Q 006580 185 SLIDMYGKLGVLYYAFGVFLNMEELDII---SWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYT--ISIVINACTKL 259 (640)
Q Consensus 185 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~ 259 (640)
+.+...++.|+.+....+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3444455566666666666554332211 1112344445556644 3444444555444321 11223333344
Q ss_pred CCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 260 RNLDKGKQVFALSVKVGFLSNSIV--LSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 260 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
|+.+ +++.+++.|..++... ..+.+...+..|+.+-...+++.-
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 5543 4444455555443221 122334445666666666666553
No 262
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.59 E-value=19 Score=30.44 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCCC
Q 006580 48 AHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCGY 127 (640)
Q Consensus 48 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~ 127 (640)
++..+....+..+.+.++.+....+.+.+..++...-...+.++.+.++.+..-.+.+.+..++...-...+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 44444444445555555444444444444445555544555555555554444444444444555444445555554444
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.32 E-value=23 Score=40.01 Aligned_cols=166 Identities=9% Similarity=0.026 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCCCChH
Q 006580 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPIPPVE 363 (640)
Q Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~ 363 (640)
...++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|.+.|.+... |+..+.... ....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~---------~~~~ 883 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF---------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC---------SSHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh---------hhhc
Confidence 34566677778888888776665544 444445667889999999999999987532 222111100 0000
Q ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----hhHHHHHHHHHHhCCChHHHHH
Q 006580 364 HGSQFHSMAIKSG--FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLD----KRD----LVSWNTIMMGLTQNGRAAETLD 433 (640)
Q Consensus 364 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~a~~ 433 (640)
. +..+.... ...-..-|.-++..+.+.+.++.+.+.-.... ..+ ...|..+.+++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 11111111 11123445667777888888777766554332 212 2268889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 006580 434 VFEELLEEGLPPDRITLAAVLLACNYGGFVDKG 466 (640)
Q Consensus 434 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A 466 (640)
.+-.+..... -...+..|+..+|..|..+.-
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 9988876433 345677777777777665543
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.92 E-value=21 Score=30.46 Aligned_cols=18 Identities=11% Similarity=-0.206 Sum_probs=7.0
Q ss_pred CCeeeHHHHHHHHHhcCC
Q 006580 209 LDIISWNSLISGCFNSGY 226 (640)
Q Consensus 209 ~~~~~~~~li~~~~~~~~ 226 (640)
++..+-...+.++.+.+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 333333333444444443
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.79 E-value=16 Score=30.91 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=57.3
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 006580 500 GKAIDITSTMP-FQPGCSIWESILRASAI--YGDVKLTENVAERMMDLQ--LPSPLPYSLLTQAYAMRGRWEAIVRVKKV 574 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 574 (640)
+++.+.|.... .+.|+..+..-+..... .++...+..+|..|...+ ..-+..|...+..+...|++++|.++++.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444454444 56666544433333222 455778889999988774 47778899999999999999999999998
Q ss_pred HHhCCCcc
Q 006580 575 MRKNGINK 582 (640)
Q Consensus 575 m~~~~~~~ 582 (640)
=.+++-.|
T Consensus 141 GI~~~A~P 148 (202)
T 3esl_A 141 GAENNCRP 148 (202)
T ss_dssp HHHTTCBS
T ss_pred HHHcCCcc
Confidence 77766433
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.72 E-value=35 Score=32.75 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDR 309 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 309 (640)
....|...|.+.|+.++..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888888888877654
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.57 E-value=13 Score=27.20 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
.-|++.+..+.+.+|++.+|+..|.++++-+...-.+...+|..++
T Consensus 41 lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 41 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 6889999999999999999999999999988877544445566554
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.24 E-value=19 Score=40.63 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=24.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 006580 418 IMMGLTQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAM 473 (640)
Q Consensus 418 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 473 (640)
++..+...+.++.+.++... ++.+...--.+..++...|++++|.++|++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44455555555555443321 1223322223344555666666666666554
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.23 E-value=2.5 Score=37.71 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 006580 492 LLCQAGQLGKAIDITSTMP-FQP-GCSIWESILRASAIYGDVKLTENVAERMMDLQLPSP 549 (640)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 549 (640)
.+.+.|.+++|++.+..-. ..| |...-..|+..+|-.|++++|..-++...+++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 4556777777777666544 444 677777777788888888888888888888877543
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.70 E-value=45 Score=32.72 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHhhC-----CCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHh-CCCCch--HHHHHHHHHHHhcCC
Q 006580 326 GFGEVALELFQLMLRE-----DIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKS-GFDSNA--VVASSLMEMYAKTGS 396 (640)
Q Consensus 326 ~~~~~a~~~~~~m~~~-----~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~ 396 (640)
|+++.|++.+-.+.+. +..........++..|.. ++++.....+..+.+. |..+.. ...+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888887666542 234445556677777777 8888877766655543 222111 111222333333333
Q ss_pred hH--HHHHHHHhCCC---C-------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhc
Q 006580 397 ID--SSTEIFVKLDK---R-------DLVSWNTIMMGLTQNGRAAETLDVFEELLEE--GLPPDR---ITLAAVLLACNY 459 (640)
Q Consensus 397 ~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~ 459 (640)
.+ .-..+...... . .......|...+...|++.+|..++..+... |..+.. ..+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333331 1 1123356777888899999999999988752 222221 245566778888
Q ss_pred cCCHHHHHHHHHHhHHhh-CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006580 460 GGFVDKGMLVFSAMKEEY-GVMPG----EEHYACIIDLLCQAGQLGKAIDITSTM 509 (640)
Q Consensus 460 ~~~~~~A~~~~~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (640)
.+++.+|..++.++.... ...++ ...+...+..+...+++.+|-+.|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988875321 22222 235666777778888888887766554
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.96 E-value=30 Score=29.54 Aligned_cols=155 Identities=11% Similarity=0.032 Sum_probs=81.4
Q ss_pred CCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHHHhccCCCCCcchHHHHHHHHHhCC
Q 006580 47 NAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALKVFDEIPEPDVVSWNSMISGYASCG 126 (640)
Q Consensus 47 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~ 126 (640)
.++..+....+..+.+.++.+....+.+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 35566666666667766665555555555555666666666666666666544444444455566555555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhcc
Q 006580 127 YSDYALEMFSKMQLQGVRPSGFTFSILLSTVSSACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNM 206 (640)
Q Consensus 127 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 206 (640)
+.+ +...+..+.. .++..+....+.++.+.|..+....+.+.+
T Consensus 110 ~~~-~~~~L~~~l~------------------------------------d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 152 (211)
T 3ltm_A 110 DER-AVEPLIKALK------------------------------------DEDWFVRIAAAFALGEIGDERAVEPLIKAL 152 (211)
T ss_dssp CGG-GHHHHHHHTT------------------------------------CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred cHH-HHHHHHHHHh------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 2222222222 234444444555555555543333333334
Q ss_pred CCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHH
Q 006580 207 EELDIISWNSLISGCFNSGYGELALDQFYSMRY 239 (640)
Q Consensus 207 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 239 (640)
..++..+-...+.++.+.+. ..+...+..+.+
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 44555555555556655554 344455555443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.37 E-value=9.4 Score=29.72 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 006580 429 AETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIID 491 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 491 (640)
-+..+-++.+....+.|++......+++|-+.+++..|+++|+-++.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345566666777778999999999999999999999999999988775 3444556766664
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.18 E-value=20 Score=26.13 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006580 361 PVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLE 440 (640)
Q Consensus 361 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 440 (640)
..++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555443 21111122334567899999999988888889888877644 467778888777777777
Q ss_pred CCCCCCHHHHHH
Q 006580 441 EGLPPDRITLAA 452 (640)
Q Consensus 441 ~g~~p~~~~~~~ 452 (640)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 555555543
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.99 E-value=31 Score=27.72 Aligned_cols=80 Identities=9% Similarity=-0.029 Sum_probs=55.0
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 500 GKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+.+.+.|.... .+.|+..+..-+....... .+..+|..+...+ ..-+..|...+..+-..|++++|.++++.=.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNS---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455565554 5667664444443332233 3778888888774 4777888999999999999999999999877
Q ss_pred hCCCcc
Q 006580 577 KNGINK 582 (640)
Q Consensus 577 ~~~~~~ 582 (640)
+++-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 766443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.53 E-value=16 Score=34.46 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHH
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDKRD---LVSWNTIMMGLTQNGR--AAETLDVFEELLEEGLPPDRIT 449 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 449 (640)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+...+++..+...|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 567888888999999999999998763 2334444445444333 3457778888887775554443
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=73.25 E-value=41 Score=28.33 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=65.0
Q ss_pred CchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh
Q 006580 178 SNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACT 257 (640)
Q Consensus 178 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 257 (640)
++..+....+..+.+.|..+....+.+.+..+|...-...+.++...+..+. ...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 3444444455555555544444444444444554444455555555555432 233333322 245445555555555
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCC
Q 006580 258 KLRNLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGF 327 (640)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (640)
..++.+....+.. ++. .++..+....+.++.+.++.+....+.+.+..++..+-...+.++.+.|.
T Consensus 102 ~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 102 QIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 5555433322222 221 34555555555555555554433333333334444444444444444443
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.90 E-value=31 Score=26.88 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 006580 511 FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLT 556 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 556 (640)
.-|++.+..+.+.+|.+.+|+..|.++++-+...-.+...+|..++
T Consensus 84 lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 84 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 6899999999999999999999999999999877544455666554
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.57 E-value=42 Score=27.36 Aligned_cols=80 Identities=6% Similarity=0.072 Sum_probs=53.2
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006580 500 GKAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 500 ~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+.+.+.|.... .+.|+..+..-+......++ +.++|..|...+ ..-+..|...+..+-..|++.+|.++++.-+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444 56666654444433333333 567788777764 4677888889999999999999999999888
Q ss_pred hCCCcc
Q 006580 577 KNGINK 582 (640)
Q Consensus 577 ~~~~~~ 582 (640)
+.+-.|
T Consensus 124 ~~~A~P 129 (164)
T 2wvi_A 124 QQKAEP 129 (164)
T ss_dssp HTTCBS
T ss_pred HcCCCc
Confidence 776544
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.33 E-value=9.5 Score=37.42 Aligned_cols=61 Identities=7% Similarity=-0.181 Sum_probs=34.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhh-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006580 449 TLAAVLLACNYGGFVDKGMLVFSAMKEEY-GVMPGEEHYACIIDLLCQAGQLGKAIDITSTM 509 (640)
Q Consensus 449 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 509 (640)
+...+...+.+.|+++.|.+.+.++.... +...-...+..++..+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44556666666777777777776665531 11122344555555666666666666555554
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.76 E-value=67 Score=28.58 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=28.0
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHH
Q 006580 257 TKLRNLDKGKQVFALSVKVGFLSNSI--VLSATIDLFSKCNRLEDSVRLFE 305 (640)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 305 (640)
+..++.....++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34455555566677777777655432 12234445556677776666665
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.63 E-value=1.2e+02 Score=31.44 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhCCCCCChhhHHHHHhhCCC-CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh---
Q 006580 318 MISTYGRYGFGEVALELFQLMLREDIRPTEFTLSCVLSSIPI-PPVEHGSQFHSMAIKSGFDSNAVVASSLMEMYAK--- 393 (640)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 393 (640)
....+.-.|+++.|++.+-.. ...+.+++...+..+.- +- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455667788999998877654 35667777777766554 32 11111110 00 11 2224566766755
Q ss_pred cCChHHHHHHHHhCC
Q 006580 394 TGSIDSSTEIFVKLD 408 (640)
Q Consensus 394 ~g~~~~A~~~~~~~~ 408 (640)
..++..|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 567777777766654
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.05 E-value=42 Score=32.74 Aligned_cols=95 Identities=14% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHHHHH--
Q 006580 383 VASSLMEMYAKTGSIDSSTEIFVKLDK------RDLVSWNTIMMGLTQNGRAAETLDVFEELLE---EGLPPDRITLA-- 451 (640)
Q Consensus 383 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~-- 451 (640)
....+.+.|.+.|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+.+... .+-.|+.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788999999999999999988872 2345677788888899999999999988765 33333333211
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhh
Q 006580 452 AVLLACNYGGFVDKGMLVFSAMKEEY 477 (640)
Q Consensus 452 ~ll~~~~~~~~~~~A~~~~~~~~~~~ 477 (640)
.-...+...+++..|-..|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11223456788999988888777653
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.97 E-value=36 Score=26.49 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCChhHHHHHhccCCCCCc---chHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCh
Q 006580 84 WNICLRGLLKSDNLDTALKVFDEIPEPDV---VSWNSMISGYASCGY--SDYALEMFSKMQLQGVRPSG 147 (640)
Q Consensus 84 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~y~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 147 (640)
.+.++.-|...|+.++|.+.++++..|.- .++..+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34566677777777777777777765522 223344444444432 35677778888777655443
No 284
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.88 E-value=76 Score=29.13 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 006580 385 SSLMEMYAKTGSIDSSTEIFVKLDKRDL---VSWNTIMMGLTQNGR--AAETLDVFEELLEEGLPPDR 447 (640)
Q Consensus 385 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 447 (640)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+...+++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 5677888888999999999999986622 233344444444322 34566777777776654443
No 285
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.12 E-value=1.1e+02 Score=28.43 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHH----HHHhhCCCCCChhhHHHHHhhCC
Q 006580 283 VLSATIDLFSKCNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVALELF----QLMLREDIRPTEFTLSCVLSSIP 358 (640)
Q Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~t~~~~l~~~~ 358 (640)
+|.++..-|.+.+++++|++++..- ...+.+.|+...+-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666678888888888876432 33455666665554443 55556778888888777777766
Q ss_pred C-C--ChHHHHHHHHHHH----HhC--CCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 006580 359 I-P--PVEHGSQFHSMAI----KSG--FDSNAVVASSLMEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAA 429 (640)
Q Consensus 359 ~-~--~~~~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 429 (640)
. . ..+. ..+.+.++ +.| -.-++.....+...|.+.+++.+|+..|-.-..+++..|..++.-+...+...
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6 3 2222 33333333 334 33467777888999999999999999885333333456655554444333221
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 006580 430 ETLDVFEELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 430 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
.++...-..++ -|...++...|..+++...+
T Consensus 185 --------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11222222233 35556788888887777665
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.22 E-value=92 Score=26.35 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 006580 414 SWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482 (640)
Q Consensus 414 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 482 (640)
.|-..+..+ ..+...++.++|..|...|+--.. ..|......+...|++.+|.++|+.-.+. +..|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 344444333 234466888888888887776554 36667777777888888888888887776 66664
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.04 E-value=37 Score=32.10 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 006580 288 IDLFSKCNRLEDSVRLFEQ 306 (640)
Q Consensus 288 ~~~~~~~g~~~~A~~~~~~ 306 (640)
+...++.|+.+-+.-+++.
T Consensus 248 L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 248 LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHc
Confidence 3344455666666666554
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.02 E-value=33 Score=27.65 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCChhHHHHHhccCCCCCc---chHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCh
Q 006580 84 WNICLRGLLKSDNLDTALKVFDEIPEPDV---VSWNSMISGYASCGY--SDYALEMFSKMQLQGVRPSG 147 (640)
Q Consensus 84 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~y~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~ 147 (640)
.+.++.-|...|+.++|.+.++++..|.- .++..+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 44566667777777777777777765521 223344444444322 34577777777776655443
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.92 E-value=96 Score=26.55 Aligned_cols=21 Identities=14% Similarity=-0.088 Sum_probs=10.5
Q ss_pred HHHHHccCCchHHHHHHhcCC
Q 006580 57 LDLYSRFGTSDDVLQLFDEIP 77 (640)
Q Consensus 57 l~~~~~~~~~~~a~~~~~~~~ 77 (640)
+...+..|+.+-+.-+++.-.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHcCC
Confidence 344445555555555555433
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.03 E-value=53 Score=29.01 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=14.4
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC
Q 006580 121 GYASCGYSDYALEMFSKMQLQGVRPS 146 (640)
Q Consensus 121 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 146 (640)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666665555554444
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=49.91 E-value=1.6e+02 Score=27.14 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchh---hHHHHHHHHHccCCchHHHHHHhcCCC
Q 006580 19 SQLIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY---LGNRCLDLYSRFGTSDDVLQLFDEIPQ 78 (640)
Q Consensus 19 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 78 (640)
++.|...++.|+++.+..++ +.|..++.. .-.+-+...+..|+.+-+.-+++.-..
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~ 84 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 84 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc
Confidence 45666667788887665554 567555432 112344555678888888888776443
No 292
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.51 E-value=2.5e+02 Score=29.08 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 006580 115 WNSMISGYASCGYSDYALEMFSKMQ 139 (640)
Q Consensus 115 y~~li~~~~~~~~~~~a~~~~~~m~ 139 (640)
--.+|-.|.|.|++++|.++.++..
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 4566777788888888888776654
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.81 E-value=1.5e+02 Score=26.47 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=9.5
Q ss_pred HHHHccCCchHHHHHHhc
Q 006580 58 DLYSRFGTSDDVLQLFDE 75 (640)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~ 75 (640)
...+..|+.+.+..+++.
T Consensus 36 ~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 333455666555555554
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.83 E-value=1.4e+02 Score=25.61 Aligned_cols=86 Identities=9% Similarity=-0.045 Sum_probs=48.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHccCCchHHHHHHhcCCCCCh---hhHHHHHHHHhcCC
Q 006580 21 LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY--LGNRCLDLYSRFGTSDDVLQLFDEIPQKNC---ISWNICLRGLLKSD 95 (640)
Q Consensus 21 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~ 95 (640)
.|...+..|+.+.+..+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..++. ..+ +.+...++.|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-CHHHHHHHcC
Confidence 4555666788888888888777766544422 122344555567777777766665433222 111 2233334556
Q ss_pred ChhHHHHHhccC
Q 006580 96 NLDTALKVFDEI 107 (640)
Q Consensus 96 ~~~~A~~~~~~~ 107 (640)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666555555543
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.41 E-value=1.1e+02 Score=26.29 Aligned_cols=77 Identities=8% Similarity=0.081 Sum_probs=50.2
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006580 501 KAIDITSTMP-FQPGCSIWESILRASAIYGDVKLTENVAERMMDLQ--LPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRK 577 (640)
Q Consensus 501 ~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 577 (640)
++.+.|.... .+.|+..+..-+...-. .+.+..+|..|...+ ..-+..|...+..+-..|++.+|.++++.=++
T Consensus 102 rc~~~F~~~~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 102 RCTREFVRNPLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444443 55566544333332222 245667888887764 46778888899999999999999999987776
Q ss_pred CCC
Q 006580 578 NGI 580 (640)
Q Consensus 578 ~~~ 580 (640)
++-
T Consensus 179 ~~A 181 (223)
T 4aez_C 179 MKA 181 (223)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.15 E-value=2e+02 Score=31.49 Aligned_cols=46 Identities=0% Similarity=-0.286 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCChh----HHHHHHHHHHhc
Q 006580 517 IWESILRASAIYGDVKLTENVAERMMDL-QLPSPL----PYSLLTQAYAMR 562 (640)
Q Consensus 517 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~ 562 (640)
.|..++..+-+++-++.+.++.+.+++. .++++. .|..+..+.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 5566666666677777777777777654 333332 344444444433
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.58 E-value=99 Score=29.94 Aligned_cols=204 Identities=10% Similarity=0.105 Sum_probs=99.9
Q ss_pred HHHhhhcCCChHHHHHHHhccCCCC---eeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcc--hHHHHHHHHhccC
Q 006580 186 LIDMYGKLGVLYYAFGVFLNMEELD---IISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEY--TISIVINACTKLR 260 (640)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~ 260 (640)
.+...+..|+.+-+..+++.-..++ .... +.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 4455567788888888887644433 2222 3444556677765444444 445444322 1123344455566
Q ss_pred CchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHH
Q 006580 261 NLDKGKQVFALSVKVGFLSNSI--VLSATIDLFSKCNRLEDSVRLFEQLDRW---DYAVINVMISTYGRYGFGEVALELF 335 (640)
Q Consensus 261 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 335 (640)
+.+ +++.+++.|..++.. ...+.+...++.|+.+.+..+++.-... +..-++.| ...+..|+.+ ++
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v 162 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL-HVAAKYGKVR----VA 162 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HH
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHcCCHH----HH
Confidence 654 444455566554432 1223445556778888777777654332 22222233 3334556554 34
Q ss_pred HHHhhCCCCCChh---hHHHHHhhCCCCChHHHHHHHHHHHHhCCCCchHH--HHHHHHHHHhcCChHHHHHHHHhC
Q 006580 336 QLMLREDIRPTEF---TLSCVLSSIPIPPVEHGSQFHSMAIKSGFDSNAVV--ASSLMEMYAKTGSIDSSTEIFVKL 407 (640)
Q Consensus 336 ~~m~~~~~~p~~~---t~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 407 (640)
+.+.+.|..|+.. ..+.+..++..++.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4444555544322 122333333334443 3334444444333211 122344455667776666666543
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.96 E-value=83 Score=27.53 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=14.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHH
Q 006580 218 ISGCFNSGYGELALDQFYSMRY 239 (640)
Q Consensus 218 i~~~~~~~~~~~A~~~~~~m~~ 239 (640)
++.+....++++|.+++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5566677777777777766543
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.75 E-value=67 Score=28.11 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=16.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006580 481 PGEEHYACIIDLLCQAGQLGKAIDITST 508 (640)
Q Consensus 481 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 508 (640)
++.......+..+.+.|+.++|.++|-+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3444455555666667777777766643
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.70 E-value=1.5e+02 Score=25.20 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=7.6
Q ss_pred hcCCChHHHHHHHhc
Q 006580 191 GKLGVLYYAFGVFLN 205 (640)
Q Consensus 191 ~~~g~~~~A~~~~~~ 205 (640)
++.|+.+....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 445555555555543
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.40 E-value=2.1e+02 Score=26.83 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc---chHHHHHHHHhccCC--chHHHHHHHHHHHhCCCCchhHHHH
Q 006580 214 WNSLISGCFNSGYGELALDQFYSMRYSGYSPDE---YTISIVINACTKLRN--LDKGKQVFALSVKVGFLSNSIVLSA 286 (640)
Q Consensus 214 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 286 (640)
.+.++.-|...|+.++|...++++.. |.- .....+..++-+.++ .+...+++..+.+.|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~----p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC----CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 46778888888999999999988853 321 223333344444332 3456666777776665544444333
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.85 E-value=2e+02 Score=26.37 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=32.6
Q ss_pred HHHHHhhhcCCChHHHHHHHhccCCCCee----eHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC
Q 006580 184 NSLIDMYGKLGVLYYAFGVFLNMEELDII----SWNSLISGCFNSGYGELALDQFYSMRYSGYSPD 245 (640)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 245 (640)
++.+...++.|+++-+..+++.=..+|.. -++.| ...+..|+.+ +++.+.+.|..|+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpL-h~A~~~g~~~----iv~~Ll~~ga~~~ 86 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL-HNAVQMSRED----IVELLLRHGADPV 86 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHH-HHHHHcCCHH----HHHHHHHcCCchh
Confidence 45566667888988888888764433321 23333 3445666654 4444455565544
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=42.81 E-value=54 Score=30.90 Aligned_cols=15 Identities=0% Similarity=-0.137 Sum_probs=7.1
Q ss_pred HHhcCChHHHHHHHH
Q 006580 391 YAKTGSIDSSTEIFV 405 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~ 405 (640)
.+..|+.+-+..+++
T Consensus 180 A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 180 AMEFRNREALDLMMD 194 (364)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344455554444444
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.75 E-value=1e+02 Score=24.66 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 006580 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRD---LVSWNTIMMGLTQNGR--AAETLDVFEELLEEGLPPDR 447 (640)
Q Consensus 384 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 447 (640)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3668888989999999999999998663 2233444445444322 44567778888776654443
No 305
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=42.55 E-value=23 Score=25.11 Aligned_cols=26 Identities=12% Similarity=-0.147 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHHcCccCCCc
Q 006580 607 GGQKIYLVLRLLTWEMEDEGCVYLEC 632 (640)
Q Consensus 607 ~~~~~~~~~~~l~~~~~~~g~~p~~~ 632 (640)
+..++...+++..+++|..|+.||-.
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIi 39 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDII 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 44577888888999999999999954
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.40 E-value=1.2e+02 Score=23.51 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 006580 384 ASSLMEMYAKTGSIDSSTEIFVKLDKRDL---VSWNTIMMGLTQNGR--AAETLDVFEELLEEGLPPDR 447 (640)
Q Consensus 384 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 447 (640)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35678888899999999999999986622 233444444444432 35677788888777654443
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=38.78 E-value=99 Score=30.76 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=21.6
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHH
Q 006580 527 IYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIV 569 (640)
Q Consensus 527 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 569 (640)
....++.|...|.++..+.|.+...|+.|+-.....|+.-+|.
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 3344455555555555555555555555555554444444433
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.72 E-value=82 Score=31.34 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChh--H-HHHHHHHHHhcCChHHHHHHHHhCC
Q 006580 448 ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEE--H-YACIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 448 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~--~-~~~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
..++.+++.|...+.+++|..+..+..--....++.. . +-.+...+.-.+++.+|.+.+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3566677777777777777777775521000011111 1 2223455566677777777766644
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.29 E-value=86 Score=31.18 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HH--HH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 006580 485 HYACIIDLLCQAGQLGKAIDITSTMPFQPG----CS--IW-ESILRASAIYGDVKLTENVAERMMDLQLPS 548 (640)
Q Consensus 485 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 548 (640)
.++.++..|...+.++.|..++.+..++.. .. .| -.++..+..++++.+|.+.+..++..-|++
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 455566666666666666666666552211 11 11 122334445566666666666666655543
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.14 E-value=1.9e+02 Score=24.56 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHccCCchHHHHHHhcCCCCC---hhhHHHHHHHHhcCCC
Q 006580 22 IDRCLSFKSFDFAKTIHGHLFKLGFNAHTY--LGNRCLDLYSRFGTSDDVLQLFDEIPQKN---CISWNICLRGLLKSDN 96 (640)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~ 96 (640)
|...+..|+.+ +++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-..++ .... +.+...+..|+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGH 89 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCC
Confidence 44455566665 444455556444321 11233444456677777777776543322 2112 23333445666
Q ss_pred hhHHHHHhccC
Q 006580 97 LDTALKVFDEI 107 (640)
Q Consensus 97 ~~~A~~~~~~~ 107 (640)
.+-+..+++.-
T Consensus 90 ~~~~~~Ll~~~ 100 (237)
T 3b7b_A 90 YEVVQYLLSNG 100 (237)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhCC
Confidence 66666665543
No 311
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.19 E-value=2.3e+02 Score=25.09 Aligned_cols=18 Identities=0% Similarity=-0.145 Sum_probs=8.1
Q ss_pred CchhHHHHHHHhhhcCCC
Q 006580 178 SNVVLGNSLIDMYGKLGV 195 (640)
Q Consensus 178 ~~~~~~~~li~~~~~~g~ 195 (640)
++..+....+.++.+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344555555555555544
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.98 E-value=1.3e+02 Score=26.24 Aligned_cols=90 Identities=9% Similarity=-0.065 Sum_probs=45.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcch-------HHHHHHHHh--ccCCchHHHHHHHHHHHhC---------CCC
Q 006580 218 ISGCFNSGYGELALDQFYSMRYSGYSPDEYT-------ISIVINACT--KLRNLDKGKQVFALSVKVG---------FLS 279 (640)
Q Consensus 218 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~ 279 (640)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344566777777777776666665555332 233333332 5677776666665443211 110
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006580 280 NSIVLSATIDLFSKCNRLEDSVRLFEQL 307 (640)
Q Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 307 (640)
......+.+...+..|+.+-+.-+++.-
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 0001122344455667777666666643
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.85 E-value=1.7e+02 Score=23.45 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 006580 429 AETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 482 (640)
+++.++|..|...|+--.. ..|......+...|++.+|.++|+.-.+. +..|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3478888888888776554 36667777778889999999999887776 66664
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.18 E-value=3.1e+02 Score=26.28 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHccCCchHHHHHHhcCC
Q 006580 21 LIDRCLSFKSFDFAKTIHGHLFKLGFNAHTY--LGNRCLDLYSRFGTSDDVLQLFDEIP 77 (640)
Q Consensus 21 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 77 (640)
.|...+..|+.+-+..++ +.|..++.. ...+.+...+..|+.+-+.-+++.-.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~ 71 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 344455566665444443 445444321 12233444556677766666666543
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.00 E-value=1.7e+02 Score=24.11 Aligned_cols=19 Identities=0% Similarity=-0.223 Sum_probs=11.8
Q ss_pred hhhcCCChHHHHHHHhccC
Q 006580 189 MYGKLGVLYYAFGVFLNME 207 (640)
Q Consensus 189 ~~~~~g~~~~A~~~~~~~~ 207 (640)
..+..|+.+....++..-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3455677777777776543
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.32 E-value=1.2e+02 Score=20.80 Aligned_cols=61 Identities=5% Similarity=0.077 Sum_probs=39.2
Q ss_pred HHhHHCCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 006580 235 YSMRYSGYSPDEYTISIVINACTKLR-NLDKGKQVFALSVKVGFLSNSIVLSATIDLFSKCNR 296 (640)
Q Consensus 235 ~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 296 (640)
+.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777776544 34556665554 566778888888777666666666666666666554
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=32.30 E-value=2.1e+02 Score=23.47 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=54.8
Q ss_pred HhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC----------------CH-HHHHHHH
Q 006580 392 AKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPP----------------DR-ITLAAVL 454 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------------~~-~~~~~ll 454 (640)
--.|.+..+.-++......+..-|..| +|-+.+++..|+..++.+....+.. |. ..|+.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 346777777777776654444444443 5677889999999999988644431 22 3456666
Q ss_pred HHHhccCCHHHHHHHHHHh
Q 006580 455 LACNYGGFVDKGMLVFSAM 473 (640)
Q Consensus 455 ~~~~~~~~~~~A~~~~~~~ 473 (640)
..|...|+.++|+..+..-
T Consensus 122 ~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhh
Confidence 7788889999999888753
No 318
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.25 E-value=2.7e+02 Score=24.65 Aligned_cols=10 Identities=0% Similarity=-0.200 Sum_probs=3.4
Q ss_pred HHHHHHHhCC
Q 006580 317 VMISTYGRYG 326 (640)
Q Consensus 317 ~li~~~~~~~ 326 (640)
..+.++...+
T Consensus 147 ~a~~aL~~~~ 156 (280)
T 1oyz_A 147 ATAFAISVIN 156 (280)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhcC
Confidence 3333333333
No 319
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.17 E-value=2.4e+02 Score=24.03 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=19.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006580 118 MISGYASCGYSDYALEMFSKMQLQGVRPS 146 (640)
Q Consensus 118 li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 146 (640)
.+...++.|+.+.+..+++.+.+.|..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34445677888887778877777666554
No 320
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.08 E-value=2.3e+02 Score=23.83 Aligned_cols=37 Identities=22% Similarity=0.083 Sum_probs=19.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 006580 521 ILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQ 557 (640)
Q Consensus 521 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 557 (640)
.+..|.+.|.+++|.+++++....++.+...-.-|..
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3456777777777777777776666555444333433
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.80 E-value=1.3e+02 Score=26.96 Aligned_cols=181 Identities=9% Similarity=-0.012 Sum_probs=79.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHH
Q 006580 388 MEMYAKTGSIDSSTEIFVKLDKRDLVSWNTIMMGLTQNGRAAETLDVFEELLEEGLPPDRI---TLAAVLLACNYGGFVD 464 (640)
Q Consensus 388 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~ 464 (640)
+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+ +++.+.+.|..++.. -.+.|. ..+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHH
Confidence 333445566665555555432221111112223334455554 333344455544432 112222 233455655
Q ss_pred HHHHHHHHhHHhhCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 006580 465 KGMLVFSAMKEEYGVMPGEE---HYACIIDLLCQAGQLGKAIDITSTMPFQPGC-SIWESILRASAIYGDVKLTENVAER 540 (640)
Q Consensus 465 ~A~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 540 (640)
-+..+++. |..++.. .+.+.+...+..|+.+-+.-+++.-....+. .-.+. +...+..|+.+-+.-+++.
T Consensus 110 ~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 110 TVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccH-HHHHHHcChHHHHHHHHHc
Confidence 44444332 4333321 1122333445567766666566554322222 22333 3344466777777777776
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 006580 541 MMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNGINKV 583 (640)
Q Consensus 541 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 583 (640)
-...+..+.......+..-...|+. ++.+.+.+.|..++
T Consensus 184 gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 184 MTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIY 222 (285)
T ss_dssp HHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCST
T ss_pred CCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCC
Confidence 6555443322211111222344553 34555566666554
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.58 E-value=2.4e+02 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=30.4
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 006580 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGGF 462 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 462 (640)
.+..+++.|+-.+-+|++.| .|....-..++.+....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 45689999999999999999 7777776666766666553
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.19 E-value=64 Score=23.47 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=21.2
Q ss_pred CchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHH
Q 006580 65 TSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTA 100 (640)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 100 (640)
+.+.|.++++.++..++..|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666666666666555554443
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.72 E-value=2.3e+02 Score=23.06 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCCh
Q 006580 429 AETLDVFEELLEEGLPPDRI-TLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGE 483 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 483 (640)
+...++|..|...|+--... .|......+...|++.+|.++|+.-.+. +..|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 34667888888887765543 5666677777888999999998887776 666654
No 325
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.48 E-value=3.5e+02 Score=25.13 Aligned_cols=224 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCchHHHHHHhcCCCCChh---hHHHHHHHHhc-CCChhHHHHHhccCCCCCcchHHHHHHHHHhCCChH
Q 006580 54 NRCLDLYSRFGTSDDVLQLFDEIPQKNCI---SWNICLRGLLK-SDNLDTALKVFDEIPEPDVVSWNSMISGYASCGYSD 129 (640)
Q Consensus 54 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~~~~~ 129 (640)
..++.-|...|+.++|.+.++++..|... ....+..++-+ ....+.+.+++..+.+.+..+-..+..|+ .
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf------~ 88 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGL------Y 88 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH------H
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH------H
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHh------ch-hHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHH
Q 006580 130 YALEMFSKMQLQGVRPSGFTFSILLSTVS------SA-CHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGV 202 (640)
Q Consensus 130 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~------~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 202 (640)
...+.+.++.-. -|....+-.-+-+.+ .. +-...+.+.+...| ........++..+.+....+.+.++
T Consensus 89 ~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g---~~~~fl~~vl~~l~~~~g~~~l~~~ 163 (339)
T 1ug3_A 89 EILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG---KAASLLLEILGLLCKSMGPKKVGTL 163 (339)
T ss_dssp HHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT---CHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHHcCHHHHHHH
Q ss_pred HhccC-------CCCeeeHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 006580 203 FLNME-------ELDIISWNSLISGCFNSGYGELALDQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV 275 (640)
Q Consensus 203 ~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 275 (640)
|..-. .++.. +..+.+....+.-......-......|-...-..+.+.+...-..+......+.....
T Consensus 164 ~~~s~l~l~~f~P~~~~-----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~ 238 (339)
T 1ug3_A 164 WREAGLSWKEFLPEGQD-----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSE 238 (339)
T ss_dssp HHHTTCCGGGTSCTTCC-----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCH
T ss_pred HHHcCCCHHHhCCCchh-----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCh
Q ss_pred CCCCchhHHHHHHHHHHh
Q 006580 276 GFLSNSIVLSATIDLFSK 293 (640)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~ 293 (640)
...++.....+++.+.++
T Consensus 239 ~~~~~~~~~~~l~~a~~~ 256 (339)
T 1ug3_A 239 QQIVSNTLVRALMTAVCY 256 (339)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred hhCChHHHHHHHHHHHHH
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.14 E-value=2.7e+02 Score=23.49 Aligned_cols=56 Identities=13% Similarity=-0.090 Sum_probs=30.4
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 006580 220 GCFNSGYGELALDQFYSMRYSGYSPDEYT--ISIVINACTKLRNLDKGKQVFALSVKVGFLS 279 (640)
Q Consensus 220 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 279 (640)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.+++.|..+
T Consensus 127 ~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 127 FAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 334455543 3444445555554321 2234455566777777777777777776543
No 327
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.13 E-value=1.6e+02 Score=20.93 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHccCCchHHHHHHhcCCCCChhhHHHHHHHHhcCCChhHHHH
Q 006580 34 AKTIHGHLFKLGFNAHTYLGNRCLDLYSRFGTSDDVLQLFDEIPQKNCISWNICLRGLLKSDNLDTALK 102 (640)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 102 (640)
...+++.+.+.|+-. ..-+..+ -......+.|.++++.++..+...|..++.++.+.+...-|..
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I---~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~ 88 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKV---RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAAL 88 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHH---HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHH---HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHH
Confidence 345666666666322 2222222 2234566777777777777777777777777777665544433
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.08 E-value=97 Score=22.48 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHH
Q 006580 295 NRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEVAL 332 (640)
Q Consensus 295 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (640)
...++|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788889999999888899999999887777655543
No 329
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=27.06 E-value=3.2e+02 Score=24.23 Aligned_cols=23 Identities=0% Similarity=-0.343 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcCCChHHHHHHH
Q 006580 16 SYCSQLIDRCLSFKSFDFAKTIH 38 (640)
Q Consensus 16 ~~~~~ll~~~~~~~~~~~a~~~~ 38 (640)
....+.++.++..|+.+...++.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~ 35 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSK 35 (285)
T ss_dssp -----------------------
T ss_pred hHHHHHHHHHhhcCCCCCcccCC
Confidence 34455566666666665555533
No 330
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.55 E-value=3.8e+02 Score=24.63 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=44.0
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 505 ITSTMPFQPG--CSIWESILRASAIYGDVKLTENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 505 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
+|......|. .-++...+....+.+++.-|..+.+++++++|+.. ..++|.+++......+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3444445553 34677788888999999999999999999998532 3455777777766543
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.71 E-value=3.2e+02 Score=23.51 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCC
Q 006580 429 AETLDVFEELLEEGLPPDR-ITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPG 482 (640)
Q Consensus 429 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 482 (640)
++..++|..|...|+--.. ..|......+...|++.+|.++|+.-.+. +..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 4677888888888776554 36667777778888999999998887776 66664
No 332
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.86 E-value=3.1e+02 Score=23.04 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=30.4
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006580 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 461 (640)
.+..+++.|+-.+-+|++.|-.|....-..++-+....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356889999999999999988887777666666655544
No 333
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.66 E-value=3.4e+02 Score=23.71 Aligned_cols=50 Identities=8% Similarity=-0.080 Sum_probs=23.3
Q ss_pred HhcCChhHHHHHHHHhHHCCCCC-------CcchHHHHHHHHh--ccCCchHHHHHHHH
Q 006580 222 FNSGYGELALDQFYSMRYSGYSP-------DEYTISIVINACT--KLRNLDKGKQVFAL 271 (640)
Q Consensus 222 ~~~~~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~ 271 (640)
++.|+.+....+++...+.+... |..-.+.|..++. +.|+.+-+..+++.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 45566666555665554444322 2222333433332 24555555555544
No 334
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.62 E-value=2.9e+02 Score=22.65 Aligned_cols=80 Identities=15% Similarity=0.051 Sum_probs=49.5
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------CCCC-hhHHHHH
Q 006580 494 CQAGQLGKAIDITSTMPFQPGCSIWESILRASAIYGDVKLTENVAERMMDL-----------------QLPS-PLPYSLL 555 (640)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------------~p~~-~~~~~~l 555 (640)
.-.|.+..++-++.... .....-|..| .|-+.+++..|...++.+++- +|.+ ...|+.+
T Consensus 44 yyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 34566666666665543 1122222222 334567777777777777733 2222 2457788
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 006580 556 TQAYAMRGRWEAIVRVKKVMR 576 (640)
Q Consensus 556 ~~~~~~~g~~~~a~~~~~~m~ 576 (640)
+..+...|+.+||+..+..--
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhhhhc
Confidence 899999999999999886543
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.19 E-value=2.9e+02 Score=22.52 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=5.7
Q ss_pred HHHHHHHHhCCCC
Q 006580 367 QFHSMAIKSGFDS 379 (640)
Q Consensus 367 ~~~~~~~~~~~~~ 379 (640)
.+.+.+.+.|..+
T Consensus 159 ~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 159 DIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCC
Confidence 3444444444443
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.96 E-value=2.4e+02 Score=23.17 Aligned_cols=165 Identities=7% Similarity=-0.075 Sum_probs=0.0
Q ss_pred HHHHhcCCChhHHHHHhccCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHh----c
Q 006580 88 LRGLLKSDNLDTALKVFDEIPEPDV-VSWNSMISGYASCGYSDYALEMFSKMQLQGVRPSG---FTFSILLSTVS----S 159 (640)
Q Consensus 88 l~~~~~~~~~~~A~~~~~~~~~~~~-~~y~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~----~ 159 (640)
+...++.|+++....+++.-..... ..-.+.+...+..|+.+.-.++.+.+.+.|..++. .-.+.|..++. +
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Q ss_pred hhHHHHHHHHHHHhCCCCCchhHHHHHHHhhhcCCChHHHHHHHhccCCCCeeeH-HHHHHHHHhcCChhHHHHHHHHhH
Q 006580 160 ACHGKQIHGSMIRSGLSLSNVVLGNSLIDMYGKLGVLYYAFGVFLNMEELDIISW-NSLISGCFNSGYGELALDQFYSMR 238 (640)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~ 238 (640)
.....++.+.+++.| ..++.. |..-. +.|..+.........-..+++.+.
T Consensus 90 ~~~~~~iv~~Ll~~G-adin~~----------------------------d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll 140 (186)
T 3t8k_A 90 ITGTTELCKIFLEKG-ADITAL----------------------------YKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140 (186)
T ss_dssp HHHHHHHHHHHHHTT-CCSSSC----------------------------BGGGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCC-CCCCcc----------------------------CCCcCchHHHHHHHcCCChhhHHHHHHHHH
Q ss_pred H-CCCCCCcc--hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch
Q 006580 239 Y-SGYSPDEY--TISIVINACTKLRNLDKGKQVFALSVKVGFLSNS 281 (640)
Q Consensus 239 ~-~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 281 (640)
+ .|..++.. .-.+-+....+.|..+-+.-+.+...+.+.+.+.
T Consensus 141 ~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~~ 186 (186)
T 3t8k_A 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186 (186)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC--
T ss_pred HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccCC
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.79 E-value=1.9e+02 Score=24.62 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHhhCCCCCh-hHHH-----HHHHHHHhcCChHHHHHHHHhCC
Q 006580 463 VDKGMLVFSAMKEEYGVMPGE-EHYA-----CIIDLLCQAGQLGKAIDITSTMP 510 (640)
Q Consensus 463 ~~~A~~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 510 (640)
++.|+.+|+.+.+...+..+. .... ..+-.|.+.|.+++|.+++++..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 678999999888763221111 1111 22345677788888888887765
No 338
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.62 E-value=19 Score=20.44 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCccCCCccc
Q 006580 614 VLRLLTWEMEDEGCVYLECDK 634 (640)
Q Consensus 614 ~~~~l~~~~~~~g~~p~~~~~ 634 (640)
.++.-++.++++|+.|++..-
T Consensus 4 alkselqalkkegfspeelaa 24 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAA 24 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 345567888899999987553
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.57 E-value=2.6e+02 Score=23.90 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHH-----HHHHHHhccCCHHHHHHHHHHhHH
Q 006580 428 AAETLDVFEELLEEGLPPDRI--TLA-----AVLLACNYGGFVDKGMLVFSAMKE 475 (640)
Q Consensus 428 ~~~a~~~~~~m~~~g~~p~~~--~~~-----~ll~~~~~~~~~~~A~~~~~~~~~ 475 (640)
.+.|+.+|+.+.+.-.-|+.. ... ..+-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 677888888888753222221 111 233457888899999999888764
No 340
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.40 E-value=4.3e+02 Score=24.13 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChh--hHHHHHHHHHhCCC--hHHHHHHHHHHhhCCCCCChh--hHHHHHhhC
Q 006580 284 LSATIDLFSKCNRLEDSVRLFEQLDRWDYA--VINVMISTYGRYGF--GEVALELFQLMLREDIRPTEF--TLSCVLSSI 357 (640)
Q Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~--t~~~~l~~~ 357 (640)
...++.-|...|+.++|...++++..|... ....++......++ .+.+-.++..+...-+.++.. .|..++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 467888899999999999999999766422 22333333333332 344556667776432333322 244444444
Q ss_pred CC--CChHHHHHHH
Q 006580 358 PI--PPVEHGSQFH 369 (640)
Q Consensus 358 ~~--~~~~~a~~~~ 369 (640)
.. -|...|..++
T Consensus 86 dDl~lD~P~a~~~l 99 (307)
T 2zu6_B 86 PELALDTPRAPQLV 99 (307)
T ss_dssp HHHHHHCTTHHHHH
T ss_pred hHhcccccchHHHH
Confidence 33 2444444333
No 341
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.11 E-value=6e+02 Score=25.36 Aligned_cols=66 Identities=6% Similarity=-0.148 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHH--------HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006580 511 FQPGCSIWESILRASAIYGDVKLT--------ENVAERMMDLQLPSPLPYSLLTQAYAMRGRWEAIVRVKKVMRKNG 579 (640)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~a--------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 579 (640)
...|......|..-+..+|-.++- +.++++ ..|.+......|-..|.+.|++-+|.+++-.+-..+
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r---~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLME---KAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHH---TCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHh---cCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 345666666666666666643332 222222 234455556666677788999999999999888764
No 342
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.84 E-value=60 Score=28.52 Aligned_cols=55 Identities=7% Similarity=-0.213 Sum_probs=37.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhCCCCch-------hhHHHHHHHHHcc---CCchHHHHHHhc
Q 006580 20 QLIDRCLSFKSFDFAKTIHGHLFKLGFNAHT-------YLGNRCLDLYSRF---GTSDDVLQLFDE 75 (640)
Q Consensus 20 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~ 75 (640)
+.|...++.|+.+.+..+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhc
Confidence 3455666789999888899988888865543 333444 444455 787777777765
No 343
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.58 E-value=2.1e+02 Score=22.48 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=36.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 006580 436 EELLEEGLPPDRITLAAVLLACNYGGFVDKGMLVFSAMKEEYGVMPGEEHYACIIDLLCQAGQLG 500 (640)
Q Consensus 436 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 500 (640)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345566766665432 2333444445556677777777665 54555666555566777776543
No 344
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.38 E-value=3.8e+02 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=31.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 006580 423 TQNGRAAETLDVFEELLEEGLPPDRITLAAVLLACNYGG 461 (640)
Q Consensus 423 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 461 (640)
.+..+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356899999999999999998887777777776665554
No 345
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.23 E-value=2.3e+02 Score=20.15 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHH
Q 006580 294 CNRLEDSVRLFEQLDRWDYAVINVMISTYGRYGFGEV 330 (640)
Q Consensus 294 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (640)
....++|..+++.+..++..++..++.++...+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4567888888888888888888888888887775443
No 346
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.07 E-value=4.9e+02 Score=23.91 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=52.8
Q ss_pred HHHHHhHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH----HHhcCCHHHHHHHHHh
Q 006580 232 DQFYSMRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKVGFLSNSIVLSATIDL----FSKCNRLEDSVRLFEQ 306 (640)
Q Consensus 232 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~ 306 (640)
++++.+.+.|+.|...++..++..+...=.++.+.++|+.+...|...-..+..+++.. ..+..+.++....++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46667778899999999999999998888899999999999988754222222222222 2234567777777766
No 347
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.73 E-value=1.6e+02 Score=24.74 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=17.1
Q ss_pred HHHHHHHccCCchHHHHHHhcCC
Q 006580 55 RCLDLYSRFGTSDDVLQLFDEIP 77 (640)
Q Consensus 55 ~ll~~~~~~~~~~~a~~~~~~~~ 77 (640)
+.+.+|.+.|.+++|.++|++.-
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHccchHHHHHHHHHHh
Confidence 45567778888888888888844
No 348
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.48 E-value=2.8e+02 Score=22.38 Aligned_cols=69 Identities=9% Similarity=0.177 Sum_probs=44.0
Q ss_pred hHHHHHHHH-hHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCH
Q 006580 228 ELALDQFYS-MRYSGYSPDEYTISIVINACTKLRNLDKGKQVFALSVKV--GFLSNSIVLSATIDLFSKCNRL 297 (640)
Q Consensus 228 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 297 (640)
+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444433 45668877654 344566777777788899999998887 6666665544455666666543
No 349
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.45 E-value=1.5e+02 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHH
Q 006580 550 LPYSLLTQAYAMRGRWEAIVRVKKVM 575 (640)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~a~~~~~~m 575 (640)
..+...+..+.+.|+|++|++..++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666777777777776654443
Done!