Query 006583
Match_columns 639
No_of_seqs 293 out of 664
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.7 1.4E-16 4.6E-21 139.8 8.7 70 36-105 18-91 (93)
2 3phx_B Ubiquitin-like protein 99.6 1.3E-15 4.3E-20 125.9 9.3 68 38-105 3-74 (79)
3 1uh6_A Ubiquitin-like 5; beta- 99.6 2.2E-15 7.7E-20 133.6 9.0 68 39-106 28-99 (100)
4 3dbh_I NEDD8; cell cycle, acti 99.6 6.3E-15 2.2E-19 123.4 9.2 72 34-105 7-82 (88)
5 4dwf_A HLA-B-associated transc 99.6 6.7E-15 2.3E-19 124.6 8.9 69 37-106 3-75 (90)
6 2kk8_A Uncharacterized protein 99.6 7.6E-15 2.6E-19 124.8 9.0 69 38-106 9-82 (84)
7 2lxa_A Ubiquitin-like protein 99.6 3.4E-15 1.2E-19 128.7 6.3 66 40-105 2-75 (87)
8 3v6c_B Ubiquitin; structural g 99.5 1.5E-14 5E-19 123.4 9.6 71 35-105 13-87 (91)
9 2faz_A Ubiquitin-like containi 99.5 1.2E-14 4.1E-19 119.6 8.6 69 38-106 1-75 (78)
10 4fbj_B NEDD8; effector-HOST ta 99.5 1.2E-14 4.1E-19 123.7 8.8 66 40-105 1-70 (88)
11 4eew_A Large proline-rich prot 99.5 1.1E-14 3.8E-19 122.8 8.4 69 36-105 14-86 (88)
12 2uyz_B Small ubiquitin-related 99.5 1.3E-14 4.6E-19 119.8 8.1 68 39-106 3-74 (79)
13 1wyw_B Ubiquitin-like protein 99.5 1.6E-14 5.6E-19 125.3 8.6 71 36-106 18-92 (97)
14 2wyq_A HHR23A, UV excision rep 99.5 3.3E-14 1.1E-18 118.5 9.5 69 38-106 4-79 (85)
15 1ndd_A NEDD8, protein (ubiquit 99.5 4.7E-14 1.6E-18 114.1 8.9 66 40-105 1-70 (76)
16 1uel_A HHR23B, UV excision rep 99.5 8.2E-14 2.8E-18 120.1 10.4 67 40-106 1-74 (95)
17 2hj8_A Interferon-induced 17 k 99.5 3.4E-14 1.2E-18 120.7 7.8 68 39-106 4-75 (88)
18 1wy8_A NP95-like ring finger p 99.5 9.2E-14 3.1E-18 117.2 10.2 69 37-105 5-79 (89)
19 4a20_A Ubiquitin-like protein 99.5 3.6E-14 1.2E-18 124.9 7.9 71 36-106 16-94 (98)
20 3m62_B UV excision repair prot 99.5 3.1E-14 1E-18 125.8 7.4 67 40-106 2-72 (106)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 9.1E-14 3.1E-18 116.5 9.6 70 37-106 5-78 (87)
22 4hcn_B Polyubiquitin, ubiquiti 99.5 6.2E-14 2.1E-18 121.5 8.4 69 37-105 20-92 (98)
23 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 8.6E-14 2.9E-18 118.9 9.0 67 39-105 1-71 (96)
24 2dzi_A Ubiquitin-like protein 99.5 1.3E-13 4.5E-18 113.4 9.7 69 37-105 5-77 (81)
25 3n3k_B Ubiquitin; hydrolase, p 99.5 6.8E-14 2.3E-18 116.2 7.9 67 39-105 3-73 (85)
26 1sif_A Ubiquitin; hydrophobic 99.5 1E-13 3.4E-18 118.0 8.7 69 38-106 8-80 (88)
27 3a9j_A Ubiquitin; protein comp 99.5 1.4E-13 4.7E-18 111.3 9.0 66 40-105 1-70 (76)
28 1wgh_A Ubiquitin-like 3, HCG-1 99.5 1.7E-13 5.7E-18 124.3 10.3 71 36-106 13-97 (116)
29 2bwf_A Ubiquitin-like protein 99.5 1.4E-13 4.7E-18 112.3 8.9 66 40-106 5-74 (77)
30 2kan_A Uncharacterized protein 99.5 1.6E-13 5.3E-18 118.9 9.6 70 36-106 12-86 (94)
31 3mtn_B UBA80, ubcep1, ubiquiti 99.5 1.6E-13 5.6E-18 113.6 8.9 67 39-105 3-73 (85)
32 3rt3_B Ubiquitin-like protein 99.5 1.5E-13 5.1E-18 127.4 9.5 70 36-105 78-151 (159)
33 2fnj_B Transcription elongatio 99.4 9.1E-14 3.1E-18 126.6 7.3 66 40-105 1-78 (118)
34 1ttn_A DC-UBP, dendritic cell- 99.4 1.7E-13 5.8E-18 120.7 8.6 71 36-106 20-94 (106)
35 2l7r_A Ubiquitin-like protein 99.4 1.7E-13 5.7E-18 118.1 8.3 68 36-105 16-87 (93)
36 3l0w_B Monoubiquitinated proli 99.4 2.6E-13 8.9E-18 129.4 9.5 66 40-105 1-70 (169)
37 1wgd_A Homocysteine-responsive 99.4 2.8E-13 9.6E-18 116.0 8.5 70 37-106 5-84 (93)
38 3b1l_X E3 ubiquitin-protein li 99.1 1.3E-14 4.5E-19 118.6 0.0 66 40-105 1-70 (76)
39 2kdb_A Homocysteine-responsive 99.4 1.7E-13 5.9E-18 120.6 6.9 70 36-105 20-99 (99)
40 3vdz_A Ubiquitin-40S ribosomal 99.4 3.6E-13 1.2E-17 119.8 9.1 68 38-105 34-105 (111)
41 2xzm_9 RPS31E; ribosome, trans 99.4 2.2E-14 7.5E-19 140.0 1.3 65 40-105 1-65 (189)
42 1v2y_A 3300001G02RIK protein; 99.4 1.8E-13 6.2E-18 122.1 6.5 67 40-106 8-94 (105)
43 1wju_A NEDD8 ultimate buster-1 99.4 4.4E-13 1.5E-17 118.9 8.8 72 35-106 11-90 (100)
44 1yx5_B Ubiquitin; proteasome, 99.4 5.2E-13 1.8E-17 115.2 9.0 67 40-106 1-71 (98)
45 1se9_A Ubiquitin family; ubiqu 99.4 3.6E-13 1.2E-17 123.9 8.2 73 33-105 10-100 (126)
46 1wx8_A Riken cDNA 4931431F19; 99.4 5.7E-13 1.9E-17 114.4 8.8 69 37-106 15-87 (96)
47 4dbg_A Ranbp-type and C3HC4-ty 99.4 6.6E-13 2.3E-17 118.7 9.1 67 39-105 24-97 (105)
48 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.4E-12 4.7E-17 114.2 10.5 70 36-106 22-95 (101)
49 3u30_A Ubiquitin, linear DI-ub 99.4 7E-13 2.4E-17 124.9 9.2 69 37-105 18-90 (172)
50 2gow_A HCG-1 protein, ubiquiti 99.4 4.8E-13 1.6E-17 122.7 7.7 70 37-106 15-98 (125)
51 3u30_A Ubiquitin, linear DI-ub 99.4 7.3E-13 2.5E-17 124.8 8.9 71 35-105 92-166 (172)
52 4ajy_B Transcription elongatio 99.4 4.8E-13 1.6E-17 121.9 7.1 66 40-105 1-78 (118)
53 1yqb_A Ubiquilin 3; structural 99.4 1.4E-12 4.7E-17 114.2 9.3 70 36-106 19-92 (100)
54 1v5o_A 1700011N24RIK protein; 99.4 1.9E-12 6.6E-17 113.2 10.2 70 37-106 5-83 (102)
55 2kdi_A Ubiquitin, vacuolar pro 99.4 1.3E-12 4.3E-17 117.1 9.2 69 38-106 8-80 (114)
56 3q3f_A Ribonuclease/ubiquitin 99.4 8.2E-13 2.8E-17 128.8 8.2 66 40-105 106-175 (189)
57 2ojr_A Ubiquitin; lanthide-bin 99.4 2.6E-12 9E-17 113.9 10.6 73 34-106 30-106 (111)
58 1wx7_A Ubiquilin 3; ubiquitin- 99.4 2.7E-12 9.3E-17 112.7 10.6 69 37-106 15-87 (106)
59 3rt3_B Ubiquitin-like protein 99.4 1.2E-12 4.2E-17 121.2 8.7 67 40-106 3-75 (159)
60 1j8c_A Ubiquitin-like protein 99.4 3.4E-12 1.1E-16 116.4 11.0 69 37-106 30-102 (125)
61 1we6_A Splicing factor, putati 99.3 1.2E-12 4.1E-17 116.0 7.5 70 36-105 24-101 (111)
62 3m63_B Ubiquitin domain-contai 99.3 4.6E-13 1.6E-17 117.5 4.7 70 36-106 25-98 (101)
63 1wia_A Hypothetical ubiquitin- 99.3 2.7E-12 9.1E-17 110.2 8.7 66 38-106 6-76 (95)
64 3u5e_m 60S ribosomal protein L 99.3 1.1E-13 3.8E-18 125.8 0.0 66 40-105 1-70 (128)
65 2dzm_A FAS-associated factor 1 99.3 4E-12 1.4E-16 112.4 9.3 67 39-106 8-80 (100)
66 1x1m_A Ubiquitin-like protein 99.3 5.9E-12 2E-16 111.2 9.9 70 37-106 10-98 (107)
67 1v5t_A 8430435I17RIK protein; 99.3 4.8E-12 1.6E-16 108.4 8.7 68 38-106 6-81 (90)
68 3b08_A Polyubiquitin-C, ubiqui 99.3 7.3E-12 2.5E-16 113.7 9.7 72 35-106 72-147 (152)
69 3u5c_f 40S ribosomal protein S 99.3 2.9E-13 1E-17 127.7 0.0 66 40-105 1-70 (152)
70 3b08_A Polyubiquitin-C, ubiqui 99.3 6.6E-12 2.3E-16 114.0 8.9 67 40-106 1-71 (152)
71 1wgg_A Ubiquitin carboxyl-term 99.3 5.4E-12 1.9E-16 109.8 7.9 67 38-106 6-77 (96)
72 2kd0_A LRR repeats and ubiquit 99.3 9.3E-12 3.2E-16 105.7 8.9 70 37-106 9-82 (85)
73 1wxv_A BAG-family molecular ch 99.3 1.6E-11 5.3E-16 104.8 9.4 68 38-106 6-83 (92)
74 1v86_A DNA segment, CHR 7, way 99.2 1.4E-11 4.7E-16 106.8 8.1 73 32-106 10-86 (95)
75 2dzj_A Synaptic glycoprotein S 99.2 4.5E-12 1.5E-16 109.0 4.9 66 39-104 10-85 (88)
76 2kjr_A CG11242; UBL, ubiquitin 99.2 2.5E-11 8.7E-16 106.0 9.2 71 36-106 12-94 (95)
77 1we7_A SF3A1 protein; structur 99.2 2.5E-11 8.5E-16 108.3 9.3 70 36-105 22-105 (115)
78 2daf_A FLJ35834 protein; hypot 99.2 1.7E-10 5.9E-15 105.1 12.4 67 40-106 16-87 (118)
79 3ai5_A Yeast enhanced green fl 99.1 6.9E-11 2.4E-15 122.9 9.4 71 36-106 230-304 (307)
80 2kj6_A Tubulin folding cofacto 99.1 1.7E-10 5.7E-15 101.4 8.7 71 36-106 11-94 (97)
81 1wf9_A NPL4 family protein; be 99.1 8.5E-11 2.9E-15 104.0 6.7 66 40-106 8-93 (107)
82 1oqy_A HHR23A, UV excision rep 99.1 6.2E-11 2.1E-15 125.8 6.9 69 38-106 6-82 (368)
83 2io1_B Small ubiquitin-related 99.1 2.9E-10 1E-14 99.1 8.5 70 37-106 5-78 (94)
84 4b6w_A Tubulin-specific chaper 99.1 1.3E-10 4.4E-15 99.8 5.7 65 42-106 7-82 (86)
85 1wm3_A Ubiquitin-like protein 99.0 1.7E-09 6E-14 89.2 8.6 66 40-105 2-71 (72)
86 2kzr_A Ubiquitin thioesterase 99.0 8.7E-10 3E-14 93.4 6.9 66 40-106 1-76 (86)
87 1v6e_A Cytoskeleton-associated 98.9 1.1E-09 3.6E-14 94.6 7.2 67 40-106 8-86 (95)
88 3a4r_A Nfatc2-interacting prot 98.9 4.2E-09 1.4E-13 88.7 10.0 69 37-105 5-78 (79)
89 1t0y_A Tubulin folding cofacto 98.9 1.6E-09 5.5E-14 98.0 7.7 70 37-106 4-85 (122)
90 2io0_B Small ubiquitin-related 98.9 3.5E-09 1.2E-13 92.0 8.5 70 37-106 3-76 (91)
91 2k8h_A Small ubiquitin protein 98.8 5.8E-09 2E-13 93.8 8.4 79 28-106 15-97 (110)
92 3shq_A UBLCP1; phosphatase, hy 98.8 2.8E-09 9.5E-14 111.2 6.2 66 40-106 6-78 (320)
93 2d07_B Ubiquitin-like protein 98.8 9.7E-09 3.3E-13 89.2 8.6 71 36-106 14-88 (93)
94 1wz0_A Ubiquitin-like protein 98.8 9.8E-09 3.4E-13 91.3 8.3 71 36-106 21-95 (104)
95 2eke_C Ubiquitin-like protein 98.8 2.2E-08 7.6E-13 89.5 9.0 71 35-106 27-101 (106)
96 1wjn_A Tubulin-folding protein 98.4 4.4E-07 1.5E-11 78.4 7.8 73 34-106 4-91 (97)
97 3kyd_D Small ubiquitin-related 98.2 3.9E-06 1.3E-10 76.2 9.2 70 37-106 38-111 (115)
98 3pge_A SUMO-modified prolifera 98.1 6.8E-06 2.3E-10 81.0 8.8 74 32-106 22-99 (200)
99 4efo_A Serine/threonine-protei 98.0 9.9E-06 3.4E-10 71.3 7.7 44 47-90 21-64 (94)
100 3tix_A Ubiquitin-like protein 97.9 2E-05 7E-10 77.5 7.5 83 23-106 41-127 (207)
101 3v7o_A Minor nucleoprotein VP3 97.5 1.2E-05 4.3E-10 79.9 0.0 75 31-106 13-91 (227)
102 3uf8_A Ubiquitin-like protein 97.3 0.00043 1.5E-08 67.9 8.1 75 31-106 13-91 (209)
103 2pjh_A Protein NPL4, nuclear p 97.2 0.00025 8.5E-09 59.9 4.1 66 39-105 4-78 (80)
104 3akj_A CTKA; protein kinase, t 96.8 0.00026 8.9E-09 73.7 1.1 49 297-348 139-188 (325)
105 3ix6_A TS, tsase, thymidylate 96.6 0.0003 1E-08 74.7 0.0 73 33-106 15-91 (360)
106 1cja_A Protein (actin-fragmin 96.6 0.0011 3.8E-08 70.0 4.3 140 164-346 75-238 (342)
107 2jxx_A Nfatc2-interacting prot 96.5 0.012 4E-07 51.9 9.3 69 36-104 22-95 (97)
108 4da1_A Protein phosphatase 1K, 96.3 0.00068 2.3E-08 71.6 0.0 73 33-106 24-100 (389)
109 2al3_A TUG long isoform; TUG U 95.9 0.03 1E-06 49.0 8.6 70 37-106 7-80 (90)
110 2kc2_A Talin-1, F1; FERM, adhe 95.8 0.016 5.4E-07 53.6 6.8 38 41-78 13-50 (128)
111 2l76_A Nfatc2-interacting prot 94.8 0.16 5.4E-06 44.8 9.5 68 38-106 20-91 (95)
112 3goe_A DNA repair protein RAD6 93.9 0.24 8.2E-06 42.6 8.4 67 39-105 9-80 (82)
113 3tpd_A Serine/threonine-protei 88.2 0.57 1.9E-05 50.2 6.1 45 297-345 293-338 (440)
114 3qx1_A FAS-associated factor 1 80.0 4.9 0.00017 33.4 7.0 66 38-104 6-80 (84)
115 1oey_A P67-PHOX, neutrophil cy 74.9 7.3 0.00025 33.4 6.7 47 38-86 4-50 (83)
116 2kvr_A Ubiquitin carboxyl-term 71.8 2.8 9.4E-05 38.4 3.6 34 51-84 57-90 (130)
117 2l32_A Small archaeal modifier 69.3 13 0.00043 30.8 6.8 61 40-106 1-61 (74)
118 3ls8_A Phosphatidylinositol 3- 67.8 2.2 7.5E-05 48.4 2.4 41 297-345 462-502 (614)
119 1wj4_A KIAA0794 protein; UBX d 64.4 40 0.0014 30.3 9.7 70 36-106 40-118 (124)
120 1wgr_A Growth factor receptor- 64.1 30 0.001 30.6 8.4 72 35-106 5-91 (100)
121 4e71_A Plexin-B2, MM1; transme 63.6 19 0.00064 32.5 7.2 58 48-105 22-108 (111)
122 2dzk_A UBX domain-containing p 61.4 36 0.0012 29.8 8.6 70 37-106 11-89 (109)
123 1e7u_A Phosphatidylinositol 3- 60.0 8.1 0.00028 45.9 5.3 40 298-345 790-829 (961)
124 2x6h_A GH13170P, VPS34, phosph 59.2 2.7 9.2E-05 48.3 1.1 41 297-345 536-576 (696)
125 3hhm_A Phosphatidylinositol-4, 58.0 3.1 0.00011 50.0 1.4 41 297-345 922-962 (1091)
126 3h6n_A Plexin-D1; structural g 54.3 48 0.0016 30.6 8.3 59 48-106 15-103 (127)
127 2cr5_A Reproduction 8; UBX dom 51.7 41 0.0014 29.4 7.3 67 38-105 22-96 (109)
128 4a3p_A Ubiquitin carboxyl-term 51.1 33 0.0011 33.4 7.2 58 50-107 140-209 (217)
129 4eut_A Serine/threonine-protei 50.3 17 0.00058 37.1 5.3 42 48-89 320-361 (396)
130 2wxf_A Phosphatidylinositol-4, 49.6 4.3 0.00015 48.1 0.8 40 298-345 774-813 (940)
131 2r2o_A Plexin-B1; effector dom 49.5 49 0.0017 30.9 7.6 57 50-106 41-127 (138)
132 3jyu_A Ubiquitin carboxyl-term 48.7 34 0.0012 33.7 6.9 57 51-107 153-221 (231)
133 2y3a_A Phosphatidylinositol-4, 47.5 5.5 0.00019 48.0 1.2 39 299-345 927-965 (1092)
134 2ylm_A Ubiquitin carboxyl-term 43.4 15 0.0005 40.7 3.7 32 52-83 38-69 (530)
135 4e74_A Plexin-A4; RBD, structu 42.5 1.1E+02 0.0038 27.7 8.7 58 49-106 26-113 (117)
136 3ivf_A Talin-1; FERM domain, c 40.8 66 0.0023 33.2 8.0 64 42-106 6-83 (371)
137 3rpf_C Molybdopterin convertin 40.2 73 0.0025 25.5 6.6 51 54-105 16-68 (74)
138 1ryj_A Unknown; beta/alpha pro 40.1 1.2E+02 0.0039 24.2 7.7 62 39-106 4-65 (70)
139 1s3s_G P47 protein; AAA ATPase 38.4 84 0.0029 28.2 7.3 55 38-92 51-108 (127)
140 2bps_A YUKD protein; ubiquitin 37.7 78 0.0027 26.8 6.5 65 40-104 5-80 (81)
141 1vd2_A Protein kinase C, IOTA 34.0 1.5E+02 0.005 25.6 7.8 46 42-87 7-54 (89)
142 3kuz_A Plexin-C1; structural g 33.4 86 0.0029 28.9 6.5 28 50-77 39-70 (126)
143 1b0n_B Protein (SINI protein); 31.9 36 0.0012 27.3 3.3 24 405-428 17-40 (57)
144 2kmm_A Guanosine-3',5'-BIS(dip 31.8 76 0.0026 24.7 5.3 62 40-106 1-62 (73)
145 1vjk_A Molybdopterin convertin 31.7 2E+02 0.007 24.0 8.3 36 38-73 8-50 (98)
146 3qij_A Protein 4.1; cytoskelet 30.9 55 0.0019 32.9 5.4 48 37-84 15-63 (296)
147 1ef1_A Moesin; membrane, FERM 28.7 63 0.0022 31.9 5.3 37 40-77 2-38 (294)
148 3hug_A RNA polymerase sigma fa 26.3 72 0.0025 26.1 4.4 55 382-450 28-82 (92)
149 3po0_A Small archaeal modifier 25.3 2.3E+02 0.0078 23.0 7.3 57 48-105 15-83 (89)
150 2kgl_A Mesoderm development ca 25.2 95 0.0032 30.5 5.6 28 587-614 75-103 (195)
151 3qa8_A MGC80376 protein; kinas 23.9 47 0.0016 37.9 3.7 47 46-92 318-365 (676)
152 1h4r_A Merlin; FERM, neurofibr 23.6 89 0.003 31.3 5.3 39 38-77 21-59 (314)
153 3ivf_A Talin-1; FERM domain, c 22.3 99 0.0034 31.8 5.5 38 40-77 86-123 (371)
154 1tyg_B YJBS; alpha beta barrel 21.6 1.5E+02 0.0052 25.1 5.6 63 34-105 15-81 (87)
155 1f0z_A THis protein; ubiquitin 20.7 2E+02 0.0068 22.4 5.8 54 47-106 5-61 (66)
156 1q1o_A Cell division control p 20.2 1.2E+02 0.0042 26.7 4.8 38 49-86 22-64 (98)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.66 E-value=1.4e-16 Score=139.83 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=65.3
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.+.-++|||||.+|+++.++|++++||++||++|++++|||+++|||+|+|++|+|+.+ +|++++||||.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 34458999999999999999999999999999999999999999999999999999986 99999999994
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=125.95 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
..|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 469999999999999999999999999999999999999999999999999999875 99999999995
No 3
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=2.2e-15 Score=133.58 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=65.2
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|++++||||+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 39999999999999999999999999999999999999999999999999999886 999999999974
No 4
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.57 E-value=6.3e-15 Score=123.40 Aligned_cols=72 Identities=18% Similarity=0.352 Sum_probs=67.1
Q ss_pred cccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 34 SQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 34 ~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
......|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 7 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 7 VGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp SSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred CCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 3345679999999999999999999999999999999999999999999999999999875 99999999995
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.56 E-value=6.7e-15 Score=124.61 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=64.7
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..|+||||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +| +++||||+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEe
Confidence 3459999999999999999999999999999999999999999999999999999875 89 899999964
No 6
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=7.6e-15 Score=124.76 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=65.3
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeE-eccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTV-LKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~-LeDd~t----~I~~dStLhLvR 106 (639)
.-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++ |+|+.+ +|+++++|||+.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 349999999999999999999999999999999999999999999999999 999885 999999999963
No 7
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.4e-15 Score=128.73 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=62.4
Q ss_pred cEEEEEeCCCcEEEEEec--CCCCHHHHHHHH-HHHcCCCCCCeEEEECCeEeccCCC----Cc-CCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELD--RSDNAHTVKRKL-QLALDVPTEERSLIYGDTVLKNDLS----YV-RHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd--~sdTV~~VKqkI-qekeGIP~eqQrLiFgGk~LeDd~t----~I-~~dStLhLv 105 (639)
|+|||||++|++++++|+ +++||.+||++| ++++|+|+++|||+|+|++|+|+.+ +| +++++|||+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE
Confidence 899999999999999876 999999999999 9999999999999999999999985 89 799999994
No 8
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.54 E-value=1.5e-14 Score=123.38 Aligned_cols=71 Identities=27% Similarity=0.456 Sum_probs=67.0
Q ss_pred ccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 35 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 35 ~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.....|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEE
Confidence 356679999999999999999999999999999999999999999999999999999875 99999999995
No 9
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.2e-14 Score=119.55 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=64.1
Q ss_pred CCcEEEEEeCCCcEE-EEE-ecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVL-GME-LDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl-~~e-Vd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|.|+|+||+.+|+++ .++ |++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 469999999999996 999 999999999999999999999999999999999998874 899999999953
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.54 E-value=1.2e-14 Score=123.71 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=63.7
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999874 99999999995
No 11
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=122.76 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=64.5
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.+..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+ +| +++||||+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEE
Confidence 34569999999999999999999999999999999999999999999999999999875 89 89999996
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.53 E-value=1.3e-14 Score=119.77 Aligned_cols=68 Identities=6% Similarity=0.113 Sum_probs=65.0
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.|+|+|||.+|+++.++|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 38999999999999999999999999999999999999999999999999999886 999999999953
No 13
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.53 E-value=1.6e-14 Score=125.29 Aligned_cols=71 Identities=6% Similarity=0.109 Sum_probs=66.7
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.+..|+|+|||.+|+++.|+|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 55679999999999999999999999999999999999999999999999999999886 999999999953
No 14
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.52 E-value=3.3e-14 Score=118.49 Aligned_cols=69 Identities=13% Similarity=0.280 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---cCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLA---LDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqek---eGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.|+|+||+.+|+++.++|++++||.+||++|+++ .|+|+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 56999999999999999999999999999999998 8999999999999999998875 899999999964
No 15
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.50 E-value=4.7e-14 Score=114.12 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=63.5
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 89999999995
No 16
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=8.2e-14 Score=120.12 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=63.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHH---cCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLA---LDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqek---eGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.++|++++||.+||++|+++ +|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 799999999999999999999999999999999 8999999999999999998875 999999999953
No 17
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=120.73 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=64.9
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~ 75 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999999875 899999999964
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=9.2e-14 Score=117.18 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCCC-cEEEE-EecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 37 SGKRRVFVQTEMG-YVLGM-ELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 37 sd~~qIfVKT~tG-ktl~~-eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+..|+|+||+.+| +++.+ +|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|.++++|||+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 79 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLL 79 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEE
Confidence 4569999999999 79999 5999999999999999999999999999999999998875 99999999995
No 19
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.49 E-value=3.6e-14 Score=124.89 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=63.3
Q ss_pred cCCCcEEEEEeCCCcEEEE--EecCCCCHHHHHHHH-HHHcCCCCCCeEEEECCeEeccCCC----Cc-CCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGM--ELDRSDNAHTVKRKL-QLALDVPTEERSLIYGDTVLKNDLS----YV-RHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~--eVd~sdTV~~VKqkI-qekeGIP~eqQrLiFgGk~LeDd~t----~I-~~dStLhLvR 106 (639)
....|+|+|||++|+++++ +|++++||.+||++| +++.|+|+++|||+|+|++|+|+.+ +| +++++|||+-
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 4566999999999998877 555999999999999 8889999999999999999999874 89 9999999963
No 20
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.1e-14 Score=125.75 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=63.5
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999874 999999999964
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=9.1e-14 Score=116.52 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=65.9
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
...|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 3569999999999999999999999999999999999999999999999999999875 999999999953
No 22
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=6.2e-14 Score=121.52 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=64.5
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
...|+|+||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 4459999999999999999999999999999999999999999999999999999875 99999999995
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.48 E-value=8.6e-14 Score=118.90 Aligned_cols=67 Identities=27% Similarity=0.472 Sum_probs=63.8
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.|+|+||+.+|+++.|+|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|.++++|||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999999999875 89999999995
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=113.44 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+..|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4559999999999999999999999999999999999999999999999999998875 89999999995
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=6.8e-14 Score=116.17 Aligned_cols=67 Identities=28% Similarity=0.462 Sum_probs=63.8
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999875 89999999995
No 26
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1e-13 Score=118.02 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=64.3
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
-.|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 359999999999999999999999999999999999999999999999999998874 899999999963
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.47 E-value=1.4e-13 Score=111.35 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=63.3
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+||+.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+ +|.++++|||+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 89999999995
No 28
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1.7e-13 Score=124.35 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=63.6
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HcCC--CCCCeEEEECCeEeccCCC----CcCCC--Cc
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQL------ALDV--PTEERSLIYGDTVLKNDLS----YVRHD--SP 101 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqe------keGI--P~eqQrLiFgGk~LeDd~t----~I~~d--St 101 (639)
+.+.|+|+|||++|++++|+|++++||.+||++|++ ++|+ |+++|||||.|++|+|+.+ +|+.+ +|
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 667799999999999999999999999999999999 7786 5999999999999999975 77544 78
Q ss_pred eeeec
Q 006583 102 LLLTR 106 (639)
Q Consensus 102 LhLvR 106 (639)
|||+.
T Consensus 93 lhLvl 97 (116)
T 1wgh_A 93 MHLVA 97 (116)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99963
No 29
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.46 E-value=1.4e-13 Score=112.30 Aligned_cols=66 Identities=15% Similarity=0.302 Sum_probs=63.4
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+ +|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 8999999 99999999999999999999999999999999999999999999874 899999999975
No 30
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=1.6e-13 Score=118.94 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=65.0
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd-~t----~I~~dStLhLvR 106 (639)
....|+||||+.+| ++.++|++++||.+||++|++++|||+++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 35569999999988 999999999999999999999999999999999999999998 65 999999999953
No 31
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=1.6e-13 Score=113.62 Aligned_cols=67 Identities=27% Similarity=0.454 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999875 89999999995
No 32
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.45 E-value=1.5e-13 Score=127.39 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=66.9
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
..+.|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 78 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 78 SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 47789999999999999999999999999999999999999999999999999999875 99999999995
No 33
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.45 E-value=9.1e-14 Score=126.62 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=61.3
Q ss_pred cEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcC-------CCCceeee
Q 006583 40 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVR-------HDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~-------~dStLhLv 105 (639)
|+|||++..|+ ++.++|++++||..||++|+.++|||+++|||+|+|++|+|+.+ +|+ ++|||||+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 67888888887 59999999999999999999999999999999999999999986 899 79999994
No 34
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=1.7e-13 Score=120.69 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=66.1
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
...-|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45569999999999999999999999999999999999999999999999999998874 999999999964
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=118.09 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=61.9
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
....|+|+||+ |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEE
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 45569999999 9999999999999999999999999999999999999999999875 99999999995
No 36
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.43 E-value=2.6e-13 Score=129.38 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=63.9
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 99999999995
No 37
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=2.8e-13 Score=116.03 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=63.8
Q ss_pred CCCcEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHc--CCCCCCeEEEECCeEeccCCC------CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLAL--DVPTEERSLIYGDTVLKNDLS------YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGk--tl~~eVd~sdTV~~VKqkIqeke--GIP~eqQrLiFgGk~LeDd~t------~I~~dStLhLvR 106 (639)
+..|+|+||+.+|+ ++.++|++++||.+||++|++++ |+|+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 34599999999999 77888889999999999999998 999999999999999998873 789999999964
No 38
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.14 E-value=1.3e-14 Score=118.59 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=63.3
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+||+.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+ +|.++++|||+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 7999999999999999999999999999999999999999999999999998874 89999999995
No 39
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=120.65 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=61.3
Q ss_pred cCCCcEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHH-cCCCC-CCeEEEECCeEeccCCC------CcCCCCceeee
Q 006583 36 HSGKRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLA-LDVPT-EERSLIYGDTVLKNDLS------YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~tGk--tl~~eVd~sdTV~~VKqkIqek-eGIP~-eqQrLiFgGk~LeDd~t------~I~~dStLhLv 105 (639)
....|+|+|||.+|+ +++|+|++++||.+||++|+++ .|+|+ ++|||||+|++|+|+.+ +|++++|||||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 345699999999999 7899999999999999999997 57765 99999999999999873 79999999996
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.42 E-value=3.6e-13 Score=119.78 Aligned_cols=68 Identities=26% Similarity=0.447 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
..|+|+||+.+|+++.|+|++++||.+||++|+++.|||+++|||+|+|+.|.|+.+ +|+++++|||+
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 359999999999999999999999999999999999999999999999999999874 99999999995
No 41
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.42 E-value=2.2e-14 Score=140.00 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
|+|||||++|++++|+|++++||.+||++|++.+|||+++|||||+|++|+|+.+ +.++|||||+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~T-Ls~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTEL-VTDDVTYYLS 65 (189)
T ss_dssp ------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCc-ccCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999887 5599999994
No 42
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.8e-13 Score=122.14 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=62.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC---------------CCeEEEECCeEeccC-CC----CcCCC
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT---------------EERSLIYGDTVLKND-LS----YVRHD 99 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~---------------eqQrLiFgGk~LeDd-~t----~I~~d 99 (639)
|+|+|||++|+++.++|++++||.+||++|++++|+|+ ++|+|+|+|++|.|| .+ +|+++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 99999999999999999999999999999999999987 467999999999754 54 99999
Q ss_pred Cceeeec
Q 006583 100 SPLLLTR 106 (639)
Q Consensus 100 StLhLvR 106 (639)
++|||++
T Consensus 88 ~~l~lv~ 94 (105)
T 1v2y_A 88 DEVSFIK 94 (105)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999975
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=4.4e-13 Score=118.89 Aligned_cols=72 Identities=10% Similarity=0.065 Sum_probs=66.0
Q ss_pred ccCCCcEEEEEeCC----CcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 35 QHSGKRRVFVQTEM----GYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 35 ~~sd~~qIfVKT~t----Gktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..+.-.|.|++.+ |+++.++|++++||.+||++|++++|||+++|||||+|++|+|+.+ +|+++++||+++
T Consensus 11 ~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 11 RTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred hhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 34566678888888 8899999999999999999999999999999999999999999986 999999998886
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.41 E-value=5.2e-13 Score=115.20 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=63.9
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 899999999953
No 45
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=3.6e-13 Score=123.94 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=65.4
Q ss_pred ccccCCCcEEEEEeCCCcEE-EEEecCCCCHHHHHHHH-----HHHcCCCC--CCeEEEECCeEeccCCC----CcCCC-
Q 006583 33 ESQHSGKRRVFVQTEMGYVL-GMELDRSDNAHTVKRKL-----QLALDVPT--EERSLIYGDTVLKNDLS----YVRHD- 99 (639)
Q Consensus 33 ~~~~sd~~qIfVKT~tGktl-~~eVd~sdTV~~VKqkI-----qekeGIP~--eqQrLiFgGk~LeDd~t----~I~~d- 99 (639)
|....+.|+|+|||++|+++ .++|++++||.+||++| ++++|||+ ++|||||+|++|+|+.+ +|+++
T Consensus 10 ~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~ 89 (126)
T 1se9_A 10 EAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSN 89 (126)
T ss_dssp CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTS
T ss_pred hhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCC
Confidence 34445889999999999999 69999999999999999 67889997 89999999999999985 89988
Q ss_pred -----Cceeee
Q 006583 100 -----SPLLLT 105 (639)
Q Consensus 100 -----StLhLv 105 (639)
+|+|||
T Consensus 90 ~~~~v~tmhlV 100 (126)
T 1se9_A 90 LAGAVTTMHVI 100 (126)
T ss_dssp CTTCCEEEEEE
T ss_pred ccCCcEEEEEE
Confidence 689995
No 46
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=5.7e-13 Score=114.37 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=65.0
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..|+|+||+. |+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 45699999999 9999999999999999999999999999999999999999999875 999999999964
No 47
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.39 E-value=6.6e-13 Score=118.74 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=62.6
Q ss_pred CcEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----Cc-CCCCceeee
Q 006583 39 KRRVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YV-RHDSPLLLT 105 (639)
Q Consensus 39 ~~qIfVKT~tG--ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I-~~dStLhLv 105 (639)
.|+|+|++..+ .+++++|++++||..||++|++++|||+++|||+|+|+.|+|+.+ || ++|++|||+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 38999999985 799999999999999999999999999999999999999988875 99 699999995
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=114.23 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=65.1
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
....|+|+||+. |+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 456799999999 9999999999999999999999999999999999999999998875 899999999964
No 49
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.39 E-value=7e-13 Score=124.94 Aligned_cols=69 Identities=26% Similarity=0.470 Sum_probs=65.1
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
...|+||||+.+|+++.++|++++||.+||++|++++|||+++|+|+|+|++|+|+.+ +|+++++|||+
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeee
Confidence 4459999999999999999999999999999999999999999999999999999875 99999999995
No 50
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.38 E-value=4.8e-13 Score=122.70 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH------HcCCC--CCCeEEEECCeEeccCCC----CcCCCC--ce
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQL------ALDVP--TEERSLIYGDTVLKNDLS----YVRHDS--PL 102 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqe------keGIP--~eqQrLiFgGk~LeDd~t----~I~~dS--tL 102 (639)
.+.|+|+|||++|++++|+|++++||.+||++|++ ++|+| +++|||||+|++|+|+.+ +|+.++ ||
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45599999999999999999999999999999999 88995 899999999999999985 888665 89
Q ss_pred eeec
Q 006583 103 LLTR 106 (639)
Q Consensus 103 hLvR 106 (639)
||+.
T Consensus 95 hlv~ 98 (125)
T 2gow_A 95 HLVA 98 (125)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9953
No 51
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.38 E-value=7.3e-13 Score=124.83 Aligned_cols=71 Identities=27% Similarity=0.473 Sum_probs=67.6
Q ss_pred ccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 35 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 35 ~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+..+.++|+||+.+|+++.++|++++||.+||++|++++|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 92 ~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 92 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred cccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence 467889999999999999999999999999999999999999999999999999999875 99999999995
No 52
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.38 E-value=4.8e-13 Score=121.94 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=62.1
Q ss_pred cEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCC-------CCceeee
Q 006583 40 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRH-------DSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~-------dStLhLv 105 (639)
|.|||+.-.+| ++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ ||++ ++||||+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 67899988899 88889999999999999999999999999999999999999875 8999 9999995
No 53
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.4e-12 Score=114.21 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.+..|+|+||+.+|+ +.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 92 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 92 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEE
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 455699999999997 7999999999999999999999999999999999999999875 999999999964
No 54
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.9e-12 Score=113.20 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCCcEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMG----YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tG----ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd-~t----~I~~dStLhLvR 106 (639)
+..|+|+||+.+| +++.++|++++||.+||++|++++|||+++|+|+|+|++|+|+ .+ +|+++++|||+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 3459999999865 7999999999999999999999999999999999999999887 44 899999999964
No 55
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.3e-12 Score=117.06 Aligned_cols=69 Identities=26% Similarity=0.468 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+-.+|+||+++|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 446999999999999999999999999999999999999999999999999998874 899999999953
No 56
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.36 E-value=8.2e-13 Score=128.78 Aligned_cols=66 Identities=27% Similarity=0.488 Sum_probs=64.0
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|||||||.+|+++.|+|++++||.+||++|++++|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEEC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 89999999995
No 57
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.36 E-value=2.6e-12 Score=113.95 Aligned_cols=73 Identities=25% Similarity=0.404 Sum_probs=67.0
Q ss_pred cccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 34 SQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 34 ~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.....|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 30 g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 30 GDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3345569999999999999999999999999999999999999999999999999998874 899999999953
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=2.7e-12 Score=112.68 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..|+|+||+.+|+ +.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 45599999999997 7999999999999999999999999999999999999999875 999999999963
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.36 E-value=1.2e-12 Score=121.25 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEE-E-CCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI-Y-GDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLi-F-gGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+ | +|++|+|+.+ +|+++++|||+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999 9 7999998875 999999999964
No 60
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=3.4e-12 Score=116.36 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
...|+|+||+. |+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45699999999 9999999999999999999999999999999999999999998875 899999999964
No 61
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.34 E-value=1.2e-12 Score=115.96 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=65.8
Q ss_pred cCCCcEEEEEeC---CCcEEEEEecC-CCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 36 HSGKRRVFVQTE---MGYVLGMELDR-SDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 36 ~sd~~qIfVKT~---tGktl~~eVd~-sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
..+.++|+||+. +|+++.++|++ ++||.+||++|++.+|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 456799999999 99999999998 999999999999999999999999999999999874 89999999995
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=4.6e-13 Score=117.51 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=63.0
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
....++|+||+ +|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 44457899998 99999999999999999999999999999999999999999999874 999999999985
No 63
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=2.7e-12 Score=110.18 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=61.5
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd-~t----~I~~dStLhLvR 106 (639)
..|+|+||+.+|+++.++|++++||.+||++|++++ +++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHR 76 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEE
Confidence 459999999999999999999999999999999998 6999999999999998 54 899999999964
No 64
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.33 E-value=1.1e-13 Score=125.78 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=0.0
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+||+.+|+++.++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 99999999995
No 65
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4e-12 Score=112.42 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=62.2
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE--CCeEeccCCC----CcCCCCceeeec
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY--GDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF--gGk~LeDd~t----~I~~dStLhLvR 106 (639)
.|++|+++.+|+++.|+|++++||+.||++|++++|||+++|+|+| +|+ |+|+.+ +|+++++|||+-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence 5899999999999999999999999999999999999999999997 676 888875 899999999964
No 66
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.31 E-value=5.9e-12 Score=111.15 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCCcEEEEEeCCC---cEEEEE--------ecCC-CCHHHHHHHHHHHc--CCCCCC-eEEEECCeEeccCCC----CcC
Q 006583 37 SGKRRVFVQTEMG---YVLGME--------LDRS-DNAHTVKRKLQLAL--DVPTEE-RSLIYGDTVLKNDLS----YVR 97 (639)
Q Consensus 37 sd~~qIfVKT~tG---ktl~~e--------Vd~s-dTV~~VKqkIqeke--GIP~eq-QrLiFgGk~LeDd~t----~I~ 97 (639)
...|+|+||+.+| +++.|+ |+++ +||.+||++|++++ |+|+++ |||+|+|+.|+|+.+ +|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4459999999999 899999 5554 99999999999999 999999 999999999999875 999
Q ss_pred CCCceeeec
Q 006583 98 HDSPLLLTR 106 (639)
Q Consensus 98 ~dStLhLvR 106 (639)
++++|||+.
T Consensus 90 ~g~~i~lv~ 98 (107)
T 1x1m_A 90 PGSTVHVLR 98 (107)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999974
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.30 E-value=4.8e-12 Score=108.36 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCcEEEEEeCCCcEEEE-EecCCCCHHHHHHHHHHHcCCCCCCeEEE---ECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGM-ELDRSDNAHTVKRKLQLALDVPTEERSLI---YGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~-eVd~sdTV~~VKqkIqekeGIP~eqQrLi---FgGk~LeDd~t----~I~~dStLhLvR 106 (639)
..|+|+||+ .|+++.| +|++++||.+||++|++++|||+++|||+ |+|++|+|+.+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 459999997 8999999 99999999999999999999999999999 99999998875 899999999985
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.29 E-value=7.3e-12 Score=113.75 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=67.4
Q ss_pred ccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 35 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 35 ~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..+.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 72 ~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 72 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 456779999999999999999999999999999999999999999999999999998875 899999999964
No 69
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.28 E-value=2.9e-13 Score=127.67 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=0.0
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+||+.+|+++.|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 89999999994
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.28 E-value=6.6e-12 Score=114.04 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+|||.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEe
Confidence 7999999999999999999999999999999999999999999999999998874 899999999964
No 71
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=5.4e-12 Score=109.78 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=62.6
Q ss_pred CCcEEEEEeCCCcEE-EEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVL-GMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl-~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.-|+|+||+ .|+++ .++|++++||.+||++|++++|||+++|||+|.|++|+|+ + +|+++++|||+.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 458999996 79999 6999999999999999999999999999999999999987 5 899999999985
No 72
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.28 E-value=9.3e-12 Score=105.67 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|-...++|++.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|+|+.
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 3445788999999999999999999999999999999999999999999999998874 899999999974
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.6e-11 Score=104.81 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=62.3
Q ss_pred CCcEEEEEeCCCcEEEEEecCC-----CCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC-C----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRS-----DNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL-S----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~s-----dTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~-t----~I~~dStLhLvR 106 (639)
.-|+|+||+ .|+++.++|+++ .||.+||++|+++.|||+++|||+|+|+.|.|+. + +|+++++|||+.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 459999999 699999999995 9999999999999999999999999999999843 3 899999999975
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=1.4e-11 Score=106.79 Aligned_cols=73 Identities=8% Similarity=0.090 Sum_probs=64.7
Q ss_pred cccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 32 MESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 32 ~~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
-+......|+|+||. .|+++.++|++++||.+||++|++++|||+++|||+|.|++|+| .+ +|+++++|||+.
T Consensus 10 ~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 10 GGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVG 86 (95)
T ss_dssp CCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECC
T ss_pred CCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEe
Confidence 334456679999995 79999999999999999999999999999999999999999944 44 899999999985
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=4.5e-12 Score=109.03 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCcEE--EE-EecCCCCHHHHHHHHHHH-cCCCCCCeEEEEC--CeEeccCCC----CcCCCCceee
Q 006583 39 KRRVFVQTEMGYVL--GM-ELDRSDNAHTVKRKLQLA-LDVPTEERSLIYG--DTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 39 ~~qIfVKT~tGktl--~~-eVd~sdTV~~VKqkIqek-eGIP~eqQrLiFg--Gk~LeDd~t----~I~~dStLhL 104 (639)
.|+|+|||.+|+++ .+ +|++++||.+||++|+++ .|+|+++|||+|. |++|+|+.+ +|+++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 39999999999886 58 999999999999999995 8999999999987 999998875 8999999987
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.23 E-value=2.5e-11 Score=106.01 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=63.1
Q ss_pred cCCCcEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--Ce---Ee-ccCCC----CcCCCCcee
Q 006583 36 HSGKRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DT---VL-KNDLS----YVRHDSPLL 103 (639)
Q Consensus 36 ~sd~~qIfVKT~tGk--tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk---~L-eDd~t----~I~~dStLh 103 (639)
..+...|+|++..+. +++++|++++||.+||++|+.++|||+++|||+|. |+ +| +|+.+ +|+++++||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 577789999998774 89999999999999999999999999999999997 45 55 67765 999999999
Q ss_pred eec
Q 006583 104 LTR 106 (639)
Q Consensus 104 LvR 106 (639)
|+.
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 984
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.23 E-value=2.5e-11 Score=108.29 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=64.9
Q ss_pred cCCCcEEEEEeC----------CCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCc
Q 006583 36 HSGKRRVFVQTE----------MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSP 101 (639)
Q Consensus 36 ~sd~~qIfVKT~----------tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dSt 101 (639)
..+..+|.|++. +|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 456789999986 58999999999999999999999999999999999999999998875 9999999
Q ss_pred eeee
Q 006583 102 LLLT 105 (639)
Q Consensus 102 LhLv 105 (639)
|||+
T Consensus 102 i~lv 105 (115)
T 1we7_A 102 IHLA 105 (115)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-10 Score=105.10 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=62.7
Q ss_pred cEEEEE-eCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQ-TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVK-T~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.|.|| +..|.++++.++++.||.+||++|++.+++|+++|+|+|+|+.|+|+.+ ||+++.||||+.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 667777 6678899999999999999999999999999999999999999999987 999999999986
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.15 E-value=6.9e-11 Score=122.86 Aligned_cols=71 Identities=27% Similarity=0.468 Sum_probs=66.9
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.++.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 46779999999999999999999999999999999999999999999999999998875 899999999964
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.11 E-value=1.7e-10 Score=101.38 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=62.1
Q ss_pred cCCCcEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC---eE---e-ccCCC----CcCCCCce
Q 006583 36 HSGKRRVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD---TV---L-KNDLS----YVRHDSPL 102 (639)
Q Consensus 36 ~sd~~qIfVKT~tG--ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG---k~---L-eDd~t----~I~~dStL 102 (639)
.++-..|+|++... +.+.++|++++||++||++|+.++|||+++|||+|.| +. | +|+.+ +|+++++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 46678899998666 4899999999999999999999999999999999987 33 4 77765 99999999
Q ss_pred eeec
Q 006583 103 LLTR 106 (639)
Q Consensus 103 hLvR 106 (639)
||+.
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.10 E-value=8.5e-11 Score=103.99 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=60.1
Q ss_pred cEEEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHcCCCCCCeEEEECCe-----------E----eccCCC----CcCCC
Q 006583 40 RRVFVQTEMGYVLGMELD-RSDNAHTVKRKLQLALDVPTEERSLIYGDT-----------V----LKNDLS----YVRHD 99 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd-~sdTV~~VKqkIqekeGIP~eqQrLiFgGk-----------~----LeDd~t----~I~~d 99 (639)
|+|+|||.+|+. .|+|+ +++||.+||++|++++|||+++|+|+|.++ + ++|+.+ +|+++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 899999999977 79999 999999999999999999999999999887 4 466654 99999
Q ss_pred Cceeeec
Q 006583 100 SPLLLTR 106 (639)
Q Consensus 100 StLhLvR 106 (639)
++|||+.
T Consensus 87 ~~L~l~~ 93 (107)
T 1wf9_A 87 SMVYLAY 93 (107)
T ss_dssp CEEECCC
T ss_pred CEEEEEe
Confidence 9999975
No 82
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.10 E-value=6.2e-11 Score=125.85 Aligned_cols=69 Identities=13% Similarity=0.312 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHH---HcCCCCCCeEEEECCeEeccCCC----CcCCCCce-eeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQL---ALDVPTEERSLIYGDTVLKNDLS----YVRHDSPL-LLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqe---keGIP~eqQrLiFgGk~LeDd~t----~I~~dStL-hLvR 106 (639)
..|+|+|||.+|+++.|+|++++||.+||++|++ ++|||+++|||||+|+.|+|+.+ +|+++++| ||+.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 3489999999999999999999999999999999 67899999999999999999874 89999999 6654
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=2.9e-10 Score=99.12 Aligned_cols=70 Identities=6% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..++|+||+.+|+++.|.|.+++++..||+.++++.|||+++|||+|+|++|.++.| +++++++||++.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 3458999999999999999999999999999999999999999999999999998886 999999999964
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.06 E-value=1.3e-10 Score=99.78 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=57.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE-------CCeEeccCCC----CcCCCCceeeec
Q 006583 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY-------GDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF-------gGk~LeDd~t----~I~~dStLhLvR 106 (639)
|.-....++.+.+.|++++||++||++|+.++|||+++|||+| .|++|+|+.+ +|++|+||||+-
T Consensus 7 iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 7 LTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 3334456778889999999999999999999999999999996 4788999986 999999999974
No 85
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.96 E-value=1.7e-09 Score=89.22 Aligned_cols=66 Identities=6% Similarity=0.091 Sum_probs=63.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
++|.||+.+|+++.|.|.+++++..|++.++++.|+|+.+|||+|+|++|.++.| +++++++||+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999998876 89999999985
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.96 E-value=8.7e-10 Score=93.43 Aligned_cols=66 Identities=14% Similarity=0.294 Sum_probs=58.4
Q ss_pred cEEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEec---cCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGME-LDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLK---NDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~e-Vd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~Le---Dd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+.. ++ |++++||.+||++|+++.|||+++|+|+|+ +++|. ++.+ ||.++++|||..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999765 77 999999999999999999999999999998 47874 3443 899999999975
No 87
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.95 E-value=1.1e-09 Score=94.65 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=58.1
Q ss_pred cEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC---eE---e-ccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD---TV---L-KNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG---k~---L-eDd~t----~I~~dStLhLvR 106 (639)
..|+|++.... .+.++|++++||.+||++|+.++|||+++|||+|.| +. | +|+.+ +|+++++|||+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 67889886553 789999999999999999999999999999999986 43 4 67664 899999999985
No 88
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.93 E-value=4.2e-09 Score=88.72 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCcEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 37 SGKRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 37 sd~~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+..++|+||+.+|+ ++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++||+.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 55699999999997 99999999999999999999999999999999999999999887 99999999974
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.92 E-value=1.6e-09 Score=97.99 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCCcEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC---e---Ee-ccCCC----CcCCCCceee
Q 006583 37 SGKRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD---T---VL-KNDLS----YVRHDSPLLL 104 (639)
Q Consensus 37 sd~~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG---k---~L-eDd~t----~I~~dStLhL 104 (639)
++.+.|+|++..+. .+.++|++++||.+||++|+.++|||+++|||+|.| + +| +|+.+ +|+++++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 44578999986553 788999999999999999999999999999999976 4 34 56654 9999999999
Q ss_pred ec
Q 006583 105 TR 106 (639)
Q Consensus 105 vR 106 (639)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=3.5e-09 Score=91.97 Aligned_cols=70 Identities=6% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+..++|+||+.+|+++.|.|.+++++..|++.++++.|+|+.++||+|+|++|.++.| +++++++|+++.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 3458999999999999999999999999999999999999999999999999998876 899999999964
No 91
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.85 E-value=5.8e-09 Score=93.80 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=71.4
Q ss_pred CCcccccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCcee
Q 006583 28 GSKRMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLL 103 (639)
Q Consensus 28 ~~~~~~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLh 103 (639)
+.++..-..+..++|+||+.+|+++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++|+
T Consensus 15 ~~~~~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Id 94 (110)
T 2k8h_A 15 GAEGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVID 94 (110)
T ss_dssp CCCCCCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEE
T ss_pred cccCCCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 3444444567789999999999999999999999999999999999999999999999999999886 899999999
Q ss_pred eec
Q 006583 104 LTR 106 (639)
Q Consensus 104 LvR 106 (639)
++.
T Consensus 95 v~~ 97 (110)
T 2k8h_A 95 AMV 97 (110)
T ss_dssp EEC
T ss_pred EEE
Confidence 974
No 92
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.82 E-value=2.8e-09 Score=111.15 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=60.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEE---ECCeEeccCCC----CcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI---YGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLi---FgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.|.||. +|+++.++|++++||.+||++|++++|||+++|+|+ |+|++|+|+.+ +|++|++|||+.
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 7899996 899999999999999999999999999999999999 89999999874 899999999985
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.82 E-value=9.7e-09 Score=89.18 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=66.2
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.+..++|+||+.+|+++.|.|.+++++..|+..++++.|++++++||+|+|++|.++.| +++++++||++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999998876 899999999964
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=9.8e-09 Score=91.29 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=67.0
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.+..++|+||+.+|+++.|.|.+++++..|+..++++.|+++.+|||+|+|++|.++.| +++++++||++.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999998886 899999999964
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.76 E-value=2.2e-08 Score=89.54 Aligned_cols=71 Identities=6% Similarity=0.081 Sum_probs=66.3
Q ss_pred ccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 35 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 35 ~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
..+..++|+||+ +|+++.|.|.+++++..|+..++++.|+++.++||+|+|++|.++.| +++++++|+++.
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 356779999999 99999999999999999999999999999999999999999998886 899999999964
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.43 E-value=4.4e-07 Score=78.37 Aligned_cols=73 Identities=26% Similarity=0.285 Sum_probs=61.6
Q ss_pred cccCCCcEEEEEe---CCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC------eE-eccCC-C----CcCC
Q 006583 34 SQHSGKRRVFVQT---EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD------TV-LKNDL-S----YVRH 98 (639)
Q Consensus 34 ~~~sd~~qIfVKT---~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG------k~-LeDd~-t----~I~~ 98 (639)
+..++...|+|++ .+|..+.+.|.+++||.+||.+|+..+|+|+..|+|.|.+ .. |.||. + +|++
T Consensus 4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 4457778899987 5889999999999999999999999999999999999873 22 54544 2 9999
Q ss_pred CCceeeec
Q 006583 99 DSPLLLTR 106 (639)
Q Consensus 99 dStLhLvR 106 (639)
+++||++.
T Consensus 84 G~~I~V~d 91 (97)
T 1wjn_A 84 GDCLLVRW 91 (97)
T ss_dssp TCEEEEEC
T ss_pred CCEEEEEe
Confidence 99999964
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.22 E-value=3.9e-06 Score=76.24 Aligned_cols=70 Identities=6% Similarity=0.108 Sum_probs=65.3
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
...++|.|++.+|+.+.|.|.+++++..|+...+++.|++..++||+|+|++|.++.| +++++++|+++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999998876 999999999964
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.10 E-value=6.8e-06 Score=80.96 Aligned_cols=74 Identities=7% Similarity=0.091 Sum_probs=66.4
Q ss_pred cccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 32 MESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 32 ~~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
-+..+....+|.|+ .+|+++.|.|.+++++..|+...+++.|+|..++||+|+|++|.++.| +++++++|+++.
T Consensus 22 p~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 22 PEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp ---CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 34446778999998 599999999999999999999999999999999999999999998886 999999999975
No 99
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.04 E-value=9.9e-06 Score=71.26 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEec
Q 006583 47 EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLK 90 (639)
Q Consensus 47 ~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~Le 90 (639)
.++..+.+.|++++||..+|++|++++|||+++|+|+|+|++|.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 37889999999999999999999999999999999999999875
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.88 E-value=2e-05 Score=77.51 Aligned_cols=83 Identities=8% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCCCCCCcccccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCC
Q 006583 23 NGEHGGSKRMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRH 98 (639)
Q Consensus 23 ~~~~~~~~~~~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~ 98 (639)
+++-....+-+.++...++|.|+ .+|+++.|.|.+++++..|+....++.|+++.++|++|+|++|.++.| ++++
T Consensus 41 ~~~~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMED 119 (207)
T 3tix_A 41 NQEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMED 119 (207)
T ss_dssp --------------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCT
T ss_pred CCCCCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCC
Confidence 33333444444456777899998 599999999999999999999999999999999999999999998886 9999
Q ss_pred CCceeeec
Q 006583 99 DSPLLLTR 106 (639)
Q Consensus 99 dStLhLvR 106 (639)
+++|+++.
T Consensus 120 GDtIDV~l 127 (207)
T 3tix_A 120 NDIIEAHR 127 (207)
T ss_dssp TEEEEECC
T ss_pred CCEEEEEE
Confidence 99999964
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.53 E-value=1.2e-05 Score=79.93 Aligned_cols=75 Identities=7% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 31 RMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 31 ~~~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.+-.+...++|.| +.+|+++.|.|.+++....|+....++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 13 ~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 13 KPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 44556778899999 8999999999999999999999999999999999999999999998886 999999999964
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.33 E-value=0.00043 Score=67.90 Aligned_cols=75 Identities=7% Similarity=0.090 Sum_probs=65.3
Q ss_pred ccccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 31 RMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 31 ~~~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.+-.+++...|.|++ +|+.+.|.|.+++....|+...+++.|++..++|++|.|+.+.++.+ .++++++|++.+
T Consensus 13 ~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 13 KPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp -----CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred cceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 3455577889999998 89999999999999999999999999999999999999999988775 789999999965
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.19 E-value=0.00025 Score=59.92 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=53.6
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeE---e--ccCCC----CcCCCCceeee
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTV---L--KNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~---L--eDd~t----~I~~dStLhLv 105 (639)
.|.|-||+-.| +..|+|++++||.+||++|+++.+++.+.|.|.++-.. | ..+.+ ||.+|++|+|.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47888999988 77799999999999999999999999999999887554 3 22322 78888888874
No 104
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=96.82 E-value=0.00026 Score=73.71 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=39.2
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee-cCccccCccC
Q 006583 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI-DHGLCLPENL 348 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DHGlcLP~~~ 348 (639)
.++-++.|||++|+|+|||..||=+-.. +..|.++|.|+ |||.++...+
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~---~~tg~~~LAP~YD~~~s~~~~~ 188 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRA---SNSKEYQIAPIFDCGSCLYPQA 188 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEE---SSSSCEEECCBCCCTTSSCTTC
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEE---CCCCCEEecCcccccccccccC
Confidence 4577999999999999999999966663 22256899998 9999887433
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.64 E-value=0.0003 Score=74.74 Aligned_cols=73 Identities=7% Similarity=0.091 Sum_probs=0.0
Q ss_pred ccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 33 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 33 ~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.-+++....|.|++ +|+++.|.|.++++...|+...+++.|++++++|++|+|++|.++.| +++++++|+++.
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 34477889999998 79999999999999999999999999999999999999999998886 899999999864
No 106
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=96.64 E-value=0.0011 Score=70.00 Aligned_cols=140 Identities=18% Similarity=0.139 Sum_probs=81.1
Q ss_pred cccccccceEEEEEeCCCCeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchhhhhhhhhcCCCCCCCCcc
Q 006583 164 IPVHSGLGGAYYFRNCAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLDYDHFANVPCT 243 (639)
Q Consensus 164 ~~i~~GSgGsYf~~n~~Gk~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krGtlvGe~a~REVAAYLLD~~gf~~VP~T 243 (639)
.++..|++|.|||... ....|.|+.. + -..|+-+|.|-...---+|..
T Consensus 75 ~~s~~Gstgvff~~td--~~~~VVK~s~-------------------------~-----l~~E~l~s~LA~~LGlpiP~~ 122 (342)
T 1cja_A 75 ERSEKGTEGLFFVETE--SGVFIVKRST-------------------------N-----IESETFCSLLCMRLGLHAPKV 122 (342)
T ss_dssp EECCSTTSCEEEEEES--SCEEEEECCT-------------------------T-----HHHHHHHHHHHHHHTCCCCCE
T ss_pred EeccCCCCCeEEEEeC--CCEEEEeCcH-------------------------H-----HHHHHHHHHHHHHhCCCCCCe
Confidence 3567899999999983 3477888541 1 156777777765322458888
Q ss_pred eEEEeeccccccC-------CCCCcccccccCCCCc-cceeeecccCCCCCCCCC----CCCCCh---hhhhhccccceE
Q 006583 244 ALVKVTHEIFNIN-------NGVNGNKIRKRKQVSK-IASLQQFIPHDFDASDHG----TSSFPV---AAVHRIGILDIR 308 (639)
Q Consensus 244 ~lV~~~hp~Fn~~-------~~~~~~~~~~~~~p~K-iGSlQ~FV~~d~~a~d~g----~~~F~v---~evhKIaILDir 308 (639)
.+|+...+-|.-- +.. +. .-+.+-.+ ..=++.|+++..-. ... ...|.. .++-||.+||+.
T Consensus 123 Riv~~~~~E~~e~~~~L~~~~~~-~~--~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~LG~Ii~FDi~ 198 (342)
T 1cja_A 123 RVVSSNSEEGTNMLECLAAIDKS-FR--VITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQLGSLMALDVI 198 (342)
T ss_dssp EEEESSSHHHHHHHHHHHHHCSS-SC--HHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHHHHHHHHHHH
T ss_pred eEEeeCcHHHHHHHHHHHHhhhh-hH--HHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhhchhheehhh
Confidence 8888764422100 000 00 00000011 11347777643211 111 122333 345579999999
Q ss_pred eecCCCC------CC---ceEEeeecCCCCCcceEEEeecCccccCc
Q 006583 309 ILNTDRH------AG---NLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 309 i~NtDRh------~G---NiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
|+|.||- .| |||+... + + .+++|||++||-.
T Consensus 199 InN~DR~Pl~W~n~GN~~NIL~~~~---n--~--~~~~IDhn~af~~ 238 (342)
T 1cja_A 199 VNNSDRLPIAWTNEGNLDNIMLSER---G--A--TVVPIDSKIIPLD 238 (342)
T ss_dssp HTCCSSSCSSSCSCCCGGGEEEESB---T--T--CEEECSCCCCCCC
T ss_pred hcCCccCcccccCCCChhheEEeCC---C--C--eEEEEcCCccccC
Confidence 9999997 44 6677652 1 1 6999999999984
No 107
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.51 E-value=0.012 Score=51.88 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=62.3
Q ss_pred cCCCcEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceee
Q 006583 36 HSGKRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 36 ~sd~~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhL 104 (639)
......|.|+...|+ .+.|.|.++.....|.....++.|+++..-|++|+|..|..+.| +++++.+|.+
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 456688999999995 89999999999999999999999999999999999999988886 8999998875
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.28 E-value=0.00068 Score=71.56 Aligned_cols=73 Identities=7% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 33 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 33 ~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.+..+...|.|++ +|+++.|.|.+++....|++...++.|+++.++|++|+|++|.++.| +++++.+|+++.
T Consensus 24 ~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 24 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 34466778899998 89999999999999999999999999999999999999999998886 899999999964
No 109
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.91 E-value=0.03 Score=48.97 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=62.1
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
++.|.|.|-..+|+..++.|.++.++.+|-++--+++|+.+++-.|.|+++.|+-... |+-+++.|-|+.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 4567999999999999999999999999988889999999999999999999976663 999999999985
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.82 E-value=0.016 Score=53.56 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=35.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCC
Q 006583 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTE 78 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~e 78 (639)
-+.|+.++|...++.|+.+.+|..+++.|..+.||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 69999999999999999999999999999999999843
No 111
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=94.79 E-value=0.16 Score=44.84 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=62.0
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
....|.|+. .|..+.|.|.++.....|..-..++.|+++..-|++|+|..+..+.| +++++.+|..++
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 347888885 79999999999999999999999999999999999999999999887 999999998864
No 112
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.94 E-value=0.24 Score=42.55 Aligned_cols=67 Identities=4% Similarity=0.069 Sum_probs=58.8
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCC-CeEEEECCeEeccCCC----CcCCCCceeee
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTE-ERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~e-qQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+..+.+++.....+.|.|.++.+|..+=....++.|||.. .-||+|.|..|..+.+ .+.++..|.++
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 4667888888889999999999999999999999999998 7899999999987765 78888887764
No 113
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=88.22 E-value=0.57 Score=50.16 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=35.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee-cCccccC
Q 006583 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI-DHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DHGlcLP 345 (639)
.++-|..||.+++.|+|-|..|+=+-.. ..|.++|.|+ |--.+.|
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~----~~g~~~LaPaYDl~~~~~ 338 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQ----AGGSYRLTPFYDIISAFP 338 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEEC----GGGCEEECCCCCCCCSGG
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEc----CCCceEECchhhcccccc
Confidence 4566778999999999999999998763 2367899999 7665555
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=79.96 E-value=4.9 Score=33.44 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=51.4
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEec--c-CCC----CcCCCCceee
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLK--N-DLS----YVRHDSPLLL 104 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~Le--D-d~t----~I~~dStLhL 104 (639)
+--+|-||..+|+.+.-....++||.+|..-|.. .+.+.....|+.+ .+.|. | +.+ ++.+.++|++
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 4467999999999998899999999999998887 6777778888844 67774 2 222 6777777766
No 115
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.91 E-value=7.3 Score=33.44 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 86 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG 86 (639)
.++.|.|... -++.|.|.++-+..++..+|.+++++|+++-.|-|.+
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3466666654 8999999999999999999999999998888998875
No 116
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.77 E-value=2.8 Score=38.43 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=30.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE
Q 006583 51 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY 84 (639)
Q Consensus 51 tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF 84 (639)
..+|.|-..+|+.++|.+|++.+|+|+++|||-.
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 4567899999999999999999999999999953
No 117
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=69.29 E-value=13 Score=30.76 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=44.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLvR 106 (639)
|+|.||-.+.+...+++..+.||.+|=+ .+|+|++.=-..-+|+.+..+.. + +++.|-+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~~-l-~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQS-V-EVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTSS-S-CCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHHC-C-CCCEEEEEE
Confidence 7889998755566689999999987754 48999877755667887765543 3 477777764
No 118
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=67.83 E-value=2.2 Score=48.37 Aligned_cols=41 Identities=34% Similarity=0.440 Sum_probs=34.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006583 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..+--++|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 462 ~S~A~ySvv~YILGigDRH~~NILld~---tG~-----v~HIDFG~~f~ 502 (614)
T 3ls8_A 462 KSCAGYCVITYILGVGDRHLDNLLLTK---TGK-----LFHIDFGYILG 502 (614)
T ss_dssp HHHHHHHHHHHHHTCCCCCTTSEEECT---TSC-----EEECCCSSCTT
T ss_pred HHHHHHhHhheeeeccCCCCcceeEcC---CCC-----EeeeehHHhhc
Confidence 345567888899999999999999964 564 99999999996
No 119
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=64.36 E-value=40 Score=30.31 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=53.8
Q ss_pred cCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEec--c-CCC----CcCCCCceeeec
Q 006583 36 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLK--N-DLS----YVRHDSPLLLTR 106 (639)
Q Consensus 36 ~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~Le--D-d~t----~I~~dStLhLvR 106 (639)
..+--+|-||..+|+.+.-.+..++||.+|..-|... +.+.....|+-. -+.|. | +.+ ++.+.++|++.+
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 3445789999999999999999999999999998876 777677788744 77784 3 223 666677777754
No 120
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=64.12 E-value=30 Score=30.57 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=51.9
Q ss_pred ccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE-------CCeEeccCCC--------CcCCC
Q 006583 35 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY-------GDTVLKNDLS--------YVRHD 99 (639)
Q Consensus 35 ~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF-------gGk~LeDd~t--------~I~~d 99 (639)
.++...-|.|=..+|...+|.|++++|+.+|=+.+.++.+...+.-.=+| .-+.|+|... .+..+
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~ 84 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGD 84 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCC
Confidence 34555678888899999999999999999999999999877654442223 2456677653 35556
Q ss_pred Cceeeec
Q 006583 100 SPLLLTR 106 (639)
Q Consensus 100 StLhLvR 106 (639)
+-+.+.+
T Consensus 85 nr~~F~k 91 (100)
T 1wgr_A 85 SRFVFRK 91 (100)
T ss_dssp CEEEECS
T ss_pred cEEEEec
Confidence 6666544
No 121
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=63.61 E-value=19 Score=32.50 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=37.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHH--cCCCC------CCeEEEEC----CeEeccCC-C----------------CcCC
Q 006583 48 MGYVLGMELDRSDNAHTVKRKLQLA--LDVPT------EERSLIYG----DTVLKNDL-S----------------YVRH 98 (639)
Q Consensus 48 tGktl~~eVd~sdTV~~VKqkIqek--eGIP~------eqQrLiFg----Gk~LeDd~-t----------------~I~~ 98 (639)
.+..+.+.|-.+|||.+||+||-++ -|+|. ++..|-+. |+.|.|.. + +|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3456888888999999999999987 45553 34456552 56666533 1 5666
Q ss_pred CCceeee
Q 006583 99 DSPLLLT 105 (639)
Q Consensus 99 dStLhLv 105 (639)
++||-|+
T Consensus 102 gatl~l~ 108 (111)
T 4e71_A 102 GATLILS 108 (111)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 6776665
No 122
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=61.39 E-value=36 Score=29.80 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=55.2
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEecc---CCC----CcCCCCceeeec
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKN---DLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~LeD---d~t----~I~~dStLhLvR 106 (639)
.+--+|-||..+|+.+.-....++||.+|.+-|....+.+.....|+-. -+.|.+ +.+ ++.+.++|++..
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4457899999999999999999999999999999887777677778643 666752 223 777788888853
No 123
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=60.03 E-value=8.1 Score=45.93 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=32.5
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006583 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
.+--++|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 790 S~A~ySvv~YILGigDRH~~NILid~---tG~-----v~HIDFG~~f~ 829 (961)
T 1e7u_A 790 SCAGYCVATFVLGIGDRHNDNIMISE---TGN-----LFHIDFGHILG 829 (961)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGEEEET---TCC-----EEECCCCCC--
T ss_pred HHHHHHHHHHHccccCCCCcceEEec---CCC-----EEEEeehhhhc
Confidence 45567788899999999999999975 564 99999999996
No 124
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=59.20 E-value=2.7 Score=48.29 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=35.0
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006583 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..+--++|.=|++.=.|||.+||||.. +|+ ++.||=|.||-
T Consensus 536 ~SlA~~Svv~YILGlGDRH~~NILid~---tG~-----v~HIDFG~~f~ 576 (696)
T 2x6h_A 536 KSCAGYCVITYLLGVGDRHLDNLLLTT---NGK-----LFHIDFGYILG 576 (696)
T ss_dssp HHHHHHHHHHHHHTCCCCCTTTEEECT---TSC-----EEECCCCSCTT
T ss_pred HHHHHHHHHHHHccCCCCCCcceEEeC---CCC-----EEEEeehhhhc
Confidence 345667888999999999999999974 564 99999999996
No 125
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=58.02 E-value=3.1 Score=50.01 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=35.1
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006583 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
...--++|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 922 ~S~A~ysvv~YiLgigDRH~~NILid~---tG~-----v~HIDFG~~f~ 962 (1091)
T 3hhm_A 922 RSCAGYCVATFILGIGDRHNSNIMVKD---DGQ-----LFHIDFGHFLD 962 (1091)
T ss_dssp HHHHHHHHHHHHHTCCCCCTTTEEEET---TSC-----EEECCCCCCSC
T ss_pred HHhhhhhheEEEEeecCCCCcceEEeC---CCC-----EEEEeehhhhc
Confidence 345567888999999999999999986 564 99999999996
No 126
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=54.28 E-value=48 Score=30.57 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHH--cCCCC------CCeEEEEC----CeE-eccCC-C----------------CcC
Q 006583 48 MGYVLGMELDRSDNAHTVKRKLQLA--LDVPT------EERSLIYG----DTV-LKNDL-S----------------YVR 97 (639)
Q Consensus 48 tGktl~~eVd~sdTV~~VKqkIqek--eGIP~------eqQrLiFg----Gk~-LeDd~-t----------------~I~ 97 (639)
.+..+.+.|-.+|||.+||+||-++ .|+|. ++..|-+. |+. |.|.. + +|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4556888888999999999999987 45553 56666552 443 55522 1 677
Q ss_pred CCCceeeec
Q 006583 98 HDSPLLLTR 106 (639)
Q Consensus 98 ~dStLhLvR 106 (639)
+++||-|+.
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 888888864
No 127
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=51.72 E-value=41 Score=29.36 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEeccC--CC----CcCCCCceeee
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKND--LS----YVRHDSPLLLT 105 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~LeDd--~t----~I~~dStLhLv 105 (639)
+--+|-||..+|+.+.-.+..++||..|..=|... +......+|+-. -+.|..+ .+ ++.+.++|++.
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 45789999999999988999999999999988854 455566777644 6777633 23 88888888775
No 128
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=51.07 E-value=33 Score=33.41 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=44.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCC-CeEEE--EC---CeEeccC-CC----CcCCCCceee-ecc
Q 006583 50 YVLGMELDRSDNAHTVKRKLQLALDVPTE-ERSLI--YG---DTVLKND-LS----YVRHDSPLLL-TRN 107 (639)
Q Consensus 50 ktl~~eVd~sdTV~~VKqkIqekeGIP~e-qQrLi--Fg---Gk~LeDd-~t----~I~~dStLhL-vRs 107 (639)
..+++.+.+.+||.+|++++.+.++||.+ +-||- ++ ...|+|. .+ +|.++..|.| +|+
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 34678899999999999999999999987 57883 32 2345553 33 8999999888 764
No 129
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=50.32 E-value=17 Score=37.12 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEe
Q 006583 48 MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVL 89 (639)
Q Consensus 48 tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~L 89 (639)
.-....+.+.+..|+..++++|++..+|+++.|.|+|.+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 556677889999999999999999999999999999998544
No 130
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=49.58 E-value=4.3 Score=48.07 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=34.1
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006583 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
.+--++|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 774 S~A~~Svv~YILGlgDRH~~NILid~---tG~-----v~HIDFG~~f~ 813 (940)
T 2wxf_A 774 SCAGYCVATYVLGIGDRHSDNIMIRE---SGQ-----LFHIDFGHFLG 813 (940)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGEEEET---TSC-----EEECCCCCCTT
T ss_pred HHHHHHHHHHHhccCCCCcccEEEec---CCC-----EEEEeehhhhc
Confidence 45557788899999999999999985 564 99999999995
No 131
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=49.55 E-value=49 Score=30.94 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=40.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHH--cCCCCC------CeEEEE--C--CeE-eccCC-------------C----CcCCC
Q 006583 50 YVLGMELDRSDNAHTVKRKLQLA--LDVPTE------ERSLIY--G--DTV-LKNDL-------------S----YVRHD 99 (639)
Q Consensus 50 ktl~~eVd~sdTV~~VKqkIqek--eGIP~e------qQrLiF--g--Gk~-LeDd~-------------t----~I~~d 99 (639)
..+.+.|=.+|||.+||+||-++ -|+|.. +-.|-+ | |+. |.|.. | +|.++
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 46888999999999999999998 467642 234433 2 443 55532 1 78899
Q ss_pred Cceeeec
Q 006583 100 SPLLLTR 106 (639)
Q Consensus 100 StLhLvR 106 (639)
++|-|+.
T Consensus 121 a~l~l~~ 127 (138)
T 2r2o_A 121 ATVALVP 127 (138)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9998875
No 132
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=48.71 E-value=34 Score=33.67 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=44.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCC-CeEEEE-C----CeEeccC-CC----CcCCCCceee-ecc
Q 006583 51 VLGMELDRSDNAHTVKRKLQLALDVPTE-ERSLIY-G----DTVLKND-LS----YVRHDSPLLL-TRN 107 (639)
Q Consensus 51 tl~~eVd~sdTV~~VKqkIqekeGIP~e-qQrLiF-g----Gk~LeDd-~t----~I~~dStLhL-vRs 107 (639)
.+++.+.+.+||.+|++++.+.++|+.+ +-||-. . -..|.|. .+ ++.++.+|.+ +|+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 4567889999999999999999999987 578843 3 3456654 33 7888888888 763
No 133
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=47.46 E-value=5.5 Score=47.95 Aligned_cols=39 Identities=36% Similarity=0.449 Sum_probs=32.4
Q ss_pred hhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006583 299 VHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 299 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
+--++|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 927 lA~ySvv~YILGlGDRH~~NILid~---tG~-----v~HIDFG~~f~ 965 (1092)
T 2y3a_A 927 CAGYCVASYVLGIGDRHSDNIMVKK---TGQ-----LFHIDFGHILG 965 (1092)
T ss_dssp HHHHHHHHHHTTCCCCCTTTEEECT---TSC-----EEECCCSCCSS
T ss_pred HHHHHHHHHHhcCCCCCCccEEEec---CCC-----EEEEeehhhhh
Confidence 4446677788888999999999975 554 99999999995
No 134
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.42 E-value=15 Score=40.67 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=29.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHcCCCCCCeEEE
Q 006583 52 LGMELDRSDNAHTVKRKLQLALDVPTEERSLI 83 (639)
Q Consensus 52 l~~eVd~sdTV~~VKqkIqekeGIP~eqQrLi 83 (639)
..+.|-+.+|+.++|++|++.+|+|+++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 45788999999999999999999999999993
No 135
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=42.47 E-value=1.1e+02 Score=27.71 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=39.0
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHH--cCCCC------CCeEEEE--C--CeE-eccCC-C----------------CcCC
Q 006583 49 GYVLGMELDRSDNAHTVKRKLQLA--LDVPT------EERSLIY--G--DTV-LKNDL-S----------------YVRH 98 (639)
Q Consensus 49 Gktl~~eVd~sdTV~~VKqkIqek--eGIP~------eqQrLiF--g--Gk~-LeDd~-t----------------~I~~ 98 (639)
...+.+.|-.+|||.+||+||-+. .|+|. ++..|-+ + |+. |.|.. + +|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 345778888999999999999987 46653 3456655 2 332 54422 1 6777
Q ss_pred CCceeeec
Q 006583 99 DSPLLLTR 106 (639)
Q Consensus 99 dStLhLvR 106 (639)
+++|-|+.
T Consensus 106 gatl~l~~ 113 (117)
T 4e74_A 106 GSVVALVS 113 (117)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 77777753
No 136
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=40.81 E-value=66 Score=33.17 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=50.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcC----CCCCCeEEEE------CCeEeccCCC----CcCCCCceeeec
Q 006583 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALD----VPTEERSLIY------GDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeG----IP~eqQrLiF------gGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.|.-. +-+-++++++++||.++-.+|.++.. .+.++--|.- .|+.|+++++ ++++++.|+..+
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 334444 77888999999999999999998863 3567778877 2677888775 899999999965
No 137
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=40.23 E-value=73 Score=25.49 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=33.7
Q ss_pred EEecCCCCHHHHHHHHHHHcCCCC--CCeEEEECCeEeccCCCCcCCCCceeee
Q 006583 54 MELDRSDNAHTVKRKLQLALDVPT--EERSLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 54 ~eVd~sdTV~~VKqkIqekeGIP~--eqQrLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
+++ ...||.++.+.+....++.. ..-.+.-+|+.+.+..+-+++++.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 566 56899999999986543321 2234455676645444568888888876
No 138
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=40.13 E-value=1.2e+02 Score=24.24 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.8
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeeec
Q 006583 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 106 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLvR 106 (639)
.|+|.|.-..+ ...+++....||.++.+++ +++.+.-.+..+|..+..+. -+++++.|-++.
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-BCCTTCEEEEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-cCCCCCEEEEEe
Confidence 37888864332 2456778889999998864 66655555667888776555 488888887763
No 139
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=38.38 E-value=84 Score=28.20 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHc-CCCCCCeEEEEC--CeEeccC
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLAL-DVPTEERSLIYG--DTVLKND 92 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqeke-GIP~eqQrLiFg--Gk~LeDd 92 (639)
+--+|-||..+|+.+.-.+..++||.+|.+-|.... +.......|+-. -+.|.|+
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~ 108 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADE 108 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCST
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCC
Confidence 447899999999999999999999999999998863 344566778754 6777653
No 140
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=37.71 E-value=78 Score=26.81 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=46.7
Q ss_pred cEEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHcCCCCC-----CeEEEECCeEeccCC----CCcCCCCceee
Q 006583 40 RRVFVQT--EMGYVLGMELDRSDNAHTVKRKLQLALDVPTE-----ERSLIYGDTVLKNDL----SYVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT--~tGktl~~eVd~sdTV~~VKqkIqekeGIP~e-----qQrLiFgGk~LeDd~----t~I~~dStLhL 104 (639)
..|.|.- -.|+++-+.|....||..|++-+.+.++++.. +-|+.-.+..|.++. ++|.+|+.|-+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3455653 58999999999999999999999999988642 123333456665544 27888887653
No 141
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=33.97 E-value=1.5e+02 Score=25.55 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=36.7
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHcCCCCCC-eEEEECCe
Q 006583 42 VFVQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPTEE-RSLIYGDT 87 (639)
Q Consensus 42 IfVKT~-tGktl~~eVd~sdTV~~VKqkIqekeGIP~eq-QrLiFgGk 87 (639)
|.||.. .|..+.+.|+++.+-.++.++|++.++++.++ -.|-|-|-
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 555544 57899999999999999999999999998655 46666554
No 142
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=33.36 E-value=86 Score=28.90 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=23.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHH----cCCCC
Q 006583 50 YVLGMELDRSDNAHTVKRKLQLA----LDVPT 77 (639)
Q Consensus 50 ktl~~eVd~sdTV~~VKqkIqek----eGIP~ 77 (639)
..+.+.|-.+|||.+||+||-+. .|.|.
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~py 70 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPY 70 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcC
Confidence 46888898999999999999876 37764
No 143
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=31.88 E-value=36 Score=27.29 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHhccc
Q 006583 405 IFLKEAAAFGLCLADIGEMMSREF 428 (639)
Q Consensus 405 ~lLk~~a~~gLtl~eIg~~m~R~~ 428 (639)
.|+++|-+.|+|+.||..++....
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc
Confidence 578999999999999999987653
No 144
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=31.83 E-value=76 Score=24.75 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=38.7
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeeec
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLvR 106 (639)
|.|.|.+.+|+. +++..+.|+.++-+.|....+- .---...+|+..+-+ +-+++++.|-++.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~--~~vaa~vNg~lvdl~-~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGD--HCIGAKVNHKLVPLS-YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHH--TEEEEEETTEECCTT-CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcccc--ceEEEEECCEEeCCC-cCcCCCCEEEEEE
Confidence 678888878987 4667889999998877433210 011113466544333 4477888888753
No 145
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=31.73 E-value=2e+02 Score=24.05 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCcEEEEEeC------CC-cEEEEEecCCCCHHHHHHHHHHHc
Q 006583 38 GKRRVFVQTE------MG-YVLGMELDRSDNAHTVKRKLQLAL 73 (639)
Q Consensus 38 d~~qIfVKT~------tG-ktl~~eVd~sdTV~~VKqkIqeke 73 (639)
+-|+|.||-- .| ....+++....||.+|.+.+....
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 4577888754 34 467888888899999999988874
No 146
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=30.91 E-value=55 Score=32.92 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=39.5
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCC-eEEEE
Q 006583 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEE-RSLIY 84 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eq-QrLiF 84 (639)
...+.+.|..++|.+..+.|+++.|+.+|=++|..+.|+..-+ --|.|
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 3447899999999999999999999999999999999997422 35544
No 147
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=28.67 E-value=63 Score=31.94 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=33.9
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 77 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~ 77 (639)
+.|.|..++| ++.+.|+++.|+.+|=++|..+.|+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 5788999998 789999999999999999999999974
No 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=26.28 E-value=72 Score=26.10 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=36.8
Q ss_pred hhHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCCCCCCChHHHHHHHHHHHHh
Q 006583 382 SGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLE 450 (639)
Q Consensus 382 ~~~Lr~~L~~lre~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~i~~~A~~~~~ 450 (639)
.+.|+..+..|.+.+.++|.+.- ..|+|..|||.+|--. ++.+...+..|++.+.
T Consensus 28 ~~~l~~~l~~L~~~~r~vl~l~~-------~~g~s~~eIA~~lgis-------~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 28 RLLIADALAQLSAEHRAVIQRSY-------YRGWSTAQIATDLGIA-------EGTVKSRLHYAVRALR 82 (92)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH-------TSCCCHHHHHHHHTSC-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcC-------HHHHHHHHHHHHHHHH
Confidence 34455555555676666654433 4899999999998653 2667777777777664
No 149
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=25.26 E-value=2.3e+02 Score=23.04 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=37.8
Q ss_pred CC-cEEEEEecCCCCHHHHHHHHHHHcC-C-----CC-----CCeEEEECCeEeccCCCCcCCCCceeee
Q 006583 48 MG-YVLGMELDRSDNAHTVKRKLQLALD-V-----PT-----EERSLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 48 tG-ktl~~eVd~sdTV~~VKqkIqekeG-I-----P~-----eqQrLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
.| +...+++....||.+|.+.+..+.. + .. ..-.+.-+|+....+ +-+++++.|.++
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-~~l~~gDeV~i~ 83 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-EATAAGDELALF 83 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-SBCCTTCEEEEE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-cccCCCCEEEEE
Confidence 45 5778888888999999999988752 1 00 013455566665543 347788877775
No 150
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=25.25 E-value=95 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.2
Q ss_pred Ccccceecc-CCCHHHHHHHHHHHHhhhh
Q 006583 587 ASTSFVKLA-DMNEEEWAQYLEKFQKLLY 614 (639)
Q Consensus 587 ~~~~~~~~~-~~~~~~w~~~~~~~~~~l~ 614 (639)
+.+-||++. +++++|=...-..+|-+|.
T Consensus 75 ~lMmFV~v~g~~Se~Ete~it~lWQtsL~ 103 (195)
T 2kgl_A 75 TLMMFVTVSGNPTEKETEEITSLWQGSLF 103 (195)
T ss_dssp CCEEEEESSSCSCHHHHHHHHHHHHHHGG
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 678999998 8999987777778888765
No 151
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=23.92 E-value=47 Score=37.86 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=39.6
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC-CeEeccC
Q 006583 46 TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG-DTVLKND 92 (639)
Q Consensus 46 T~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg-Gk~LeDd 92 (639)
..+++...+.+.+..|+..++..|++..|||++.|.|++. |..++..
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~ 365 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSA 365 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTT
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCC
Confidence 3467778899999999999999999999999999999997 4444433
No 152
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=23.64 E-value=89 Score=31.30 Aligned_cols=39 Identities=8% Similarity=-0.056 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC
Q 006583 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 77 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~ 77 (639)
..+.+.|..++| ++.|.|+++.|+.+|=++|....|+..
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 346788999999 899999999999999999999999974
No 153
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=22.26 E-value=99 Score=31.84 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC
Q 006583 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 77 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~ 77 (639)
+.+.|..++|....+.|+++.|+.+|=++|..+.|+..
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 66889999999999999999999999999999999973
No 154
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=21.61 E-value=1.5e+02 Score=25.14 Aligned_cols=63 Identities=3% Similarity=0.060 Sum_probs=39.2
Q ss_pred cccCCCcEEEEEeCCCcEEEEEecCC-CCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC---CCCcCCCCceeee
Q 006583 34 SQHSGKRRVFVQTEMGYVLGMELDRS-DNAHTVKRKLQLALDVPTEERSLIYGDTVLKND---LSYVRHDSPLLLT 105 (639)
Q Consensus 34 ~~~sd~~qIfVKT~tGktl~~eVd~s-dTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd---~t~I~~dStLhLv 105 (639)
|.....|+|+| +|+.+. ++.. .||.+|.+++ +++.+.-.+..+|..+..+ .+.+++++.|-++
T Consensus 15 ~~~~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 15 GHIGGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp -------CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred CCCCcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 34455677776 688664 4666 8999998764 6665555566788877542 2468888888776
No 155
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=20.67 E-value=2e+02 Score=22.40 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC---CCCcCCCCceeeec
Q 006583 47 EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND---LSYVRHDSPLLLTR 106 (639)
Q Consensus 47 ~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd---~t~I~~dStLhLvR 106 (639)
++|+.+ ++....||.++.+++ +++...-.+..+|..+..+ .+.+++++.|.++.
T Consensus 5 vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 5 FNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp ESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred ECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 378876 456778999998875 5665555566678777532 24578888887763
No 156
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=20.22 E-value=1.2e+02 Score=26.67 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHcCCCCCC-----eEEEECC
Q 006583 49 GYVLGMELDRSDNAHTVKRKLQLALDVPTEE-----RSLIYGD 86 (639)
Q Consensus 49 Gktl~~eVd~sdTV~~VKqkIqekeGIP~eq-----QrLiFgG 86 (639)
+.++++-|.++.+-.++..+|.++++++..+ -+|-|.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 6689999999999999999999999876333 3566654
Done!