BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006585
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 253/492 (51%), Gaps = 37/492 (7%)
Query: 145 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 204
++F NR +NM+ I +G DMD+TL +Y + FESL YD +L YPEE+ ++ F+
Sbjct: 5 KVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFN 64
Query: 205 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYA 264
+ +RGLV+D K GNILK+ R+ ++++YHG +++S ++ + Y + + +P+Y
Sbjct: 65 FDDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYV--DLGDPNYM 122
Query: 265 LIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAK 324
IDT FS+A L+ QLVD D NP K Y + +DV+ VD H DGTLK ++ K
Sbjct: 123 AIDTSFSIAFCILYGQLVDLKDTNP---DKMPSYQAIAQDVQYCVDKVHSDGTLKNIIIK 179
Query: 325 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW 384
+ K Y+ ++ +V LK G+ F++TNS + Y+ +++++ S LD G W
Sbjct: 180 NLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYAL-SPFLDKG----EHW 234
Query: 385 LLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKN 444
F+ VIT + KP FF+++ R V PE+G + N G I PG
Sbjct: 235 QGLFEFVITLANKPRFFYDNLR--FLSVNPENGTMTNVH--------GPIVPG------- 277
Query: 445 GTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXX 504
++QGG+ + L + ++LY+GDHIYGDILR KK WRT
Sbjct: 278 ----VYQGGNAKKFTEDLGV-GGDEILYIGDHIYGDILRLKKDCNWRT----ALVVEELG 328
Query: 505 XXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKA 564
E I+ ++ L + ID Q + + DL+ Q
Sbjct: 329 EEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQ-QYDQEIHDLQLQISTV 387
Query: 565 RLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYR 624
L +E + ++ W ++ + G + S FA+QV+RFAC+Y ++S+L +SP Y+R
Sbjct: 388 DLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFR 447
Query: 625 PSEGFMPHEFEI 636
+ + H+ +I
Sbjct: 448 ANRRLLAHDIDI 459
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 250/492 (50%), Gaps = 37/492 (7%)
Query: 145 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 204
++F NR +N + I +G D D+TL +Y + FESL YD +L YPEE+ ++ F+
Sbjct: 5 KVFVNRIINXRKIKLIGLDXDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFN 64
Query: 205 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYA 264
+ +RGLV+D K GNILK+ R+ ++++YHG +++S ++ + Y + + +P+Y
Sbjct: 65 FDDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYV--DLGDPNYX 122
Query: 265 LIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAK 324
IDT FS+A L+ QLVD D NP K Y + +DV+ VD H DGTLK ++ K
Sbjct: 123 AIDTSFSIAFCILYGQLVDLKDTNP---DKXPSYQAIAQDVQYCVDKVHSDGTLKNIIIK 179
Query: 325 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW 384
+ K Y+ ++ +V LK G+ F++TNS + Y+ +++++ S LD G W
Sbjct: 180 NLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYAL-SPFLDKG----EHW 234
Query: 385 LLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKN 444
F+ VIT + KP FF+++ R V PE+G N G I PG
Sbjct: 235 QGLFEFVITLANKPRFFYDNLR--FLSVNPENGTXTNVH--------GPIVPG------- 277
Query: 445 GTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXX 504
++QGG+ + L + ++LY+GDHIYGDILR KK WRT
Sbjct: 278 ----VYQGGNAKKFTEDLGV-GGDEILYIGDHIYGDILRLKKDCNWRTA----LVVEELG 328
Query: 505 XXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKA 564
E I+ ++ L + ID Q + + DL+ Q
Sbjct: 329 EEIASQIRALPIEKKIGEAXAIKKELEQKYVDLCTRSIDESSQ-QYDQEIHDLQLQISTV 387
Query: 565 RLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYR 624
L +E + ++ W ++ + G + S FA+QV+RFAC+Y ++S+L +SP Y+R
Sbjct: 388 DLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYXEKLSDLLEHSPXTYFR 447
Query: 625 PSEGFMPHEFEI 636
+ + H+ +I
Sbjct: 448 ANRRLLAHDIDI 459
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 218 bits (555), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 248/501 (49%), Gaps = 59/501 (11%)
Query: 145 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 204
++F NRSL M+ I GFDMDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 53 RVFVNRSLAMEKIKCFGFDMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 111
Query: 205 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 263
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 112 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 169
Query: 264 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 314
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 170 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 229
Query: 315 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 373
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 230 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 288
Query: 374 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGD 433
G + + W YFD+++ + KP FF E L QV+ ++G L GT G
Sbjct: 289 PKPG-SSHRPWQSYFDLILVDARKPLFFGEG--TVLRQVDTKTGKL---KIGT---YTGP 339
Query: 434 ISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 493
+ G+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 340 LQHGI----------VYSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF 388
Query: 494 XXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTR 553
++ + +++ L L +D R
Sbjct: 389 --------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ER 432
Query: 554 MDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSN 613
D QR +++H C + + G L ++G + + FA QV R+A LY + N
Sbjct: 433 PDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFIN 486
Query: 614 LSLYSPDKY-YRPSEGFMPHE 633
L LY P Y +R + MPHE
Sbjct: 487 L-LYYPFSYLFRAAHVLMPHE 506
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 248/501 (49%), Gaps = 59/501 (11%)
Query: 145 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 204
++F NRSL M+ I GF+MDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 53 RVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 111
Query: 205 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 263
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 112 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 169
Query: 264 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 314
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 170 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 229
Query: 315 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 373
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 230 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 288
Query: 374 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGD 433
G + + W YFD+++ + KP FF E L QV+ ++G L GT G
Sbjct: 289 PKPG-SSHRPWQSYFDLILVDARKPLFFGEG--TVLRQVDTKTGKL---KIGT---YTGP 339
Query: 434 ISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 493
+ G+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 340 LQHGI----------VYSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF 388
Query: 494 XXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTR 553
++ + +++ L L +D R
Sbjct: 389 --------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ER 432
Query: 554 MDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSN 613
D QR +++H C + + G L ++G + + FA QV R+A LY + N
Sbjct: 433 PDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFIN 486
Query: 614 LSLYSPDKY-YRPSEGFMPHE 633
L LY P Y +R + MPHE
Sbjct: 487 L-LYYPFSYLFRAAHVLMPHE 506
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 248/501 (49%), Gaps = 59/501 (11%)
Query: 145 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 204
++F NRSL M+ I GF+MDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 52 RVFVNRSLAMEKIKCFGFNMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 110
Query: 205 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 263
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 111 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 168
Query: 264 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 314
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 169 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 228
Query: 315 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 373
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 229 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 287
Query: 374 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGD 433
G + + W YFD+++ + KP FF E L QV+ ++G L GT G
Sbjct: 288 PKPG-SSHRPWQSYFDLILVDARKPLFFGEG--TVLRQVDTKTGKL---KIGT---YTGP 338
Query: 434 ISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 493
+ G+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 339 LQHGI----------VYSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF 387
Query: 494 XXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTR 553
++ + +++ L L +D R
Sbjct: 388 --------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ER 431
Query: 554 MDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSN 613
D QR +++H C + + G L ++G + + FA QV R+A LY + N
Sbjct: 432 PDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFIN 485
Query: 614 LSLYSPDKY-YRPSEGFMPHE 633
L LY P Y +R + MPHE
Sbjct: 486 L-LYYPFSYLFRAAHVLMPHE 505
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 247/501 (49%), Gaps = 59/501 (11%)
Query: 145 QIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFD 204
++F NRSL M+ I GF MDYTLA YK +ESL ++ TV +LV +GYP+ELL +++D
Sbjct: 53 RVFVNRSLAMEKIKCFGFXMDYTLAVYKSPEYESLGFELTVERLV-SIGYPQELLSFAYD 111
Query: 205 WKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDY 263
+ RGLV D GN+LK+D + + V HGF + E E Y N I RD D +
Sbjct: 112 STFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERF 169
Query: 264 ALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHR 314
+++TLF+L E YL A LVDF N P S T Y M++DVR AVD H
Sbjct: 170 YILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY 229
Query: 315 DGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHT 373
G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H
Sbjct: 230 KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHG 288
Query: 374 LDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGD 433
G + + W YFD+++ + KP FF E L QV+ ++G L GT G
Sbjct: 289 PKPG-SSHRPWQSYFDLILVDARKPLFFGEG--TVLRQVDTKTGKL---KIGT---YTGP 339
Query: 434 ISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 493
+ G+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 340 LQHGI----------VYSGGSSDTICDLLGAK-GKDILYIGDHIFGDILKSKKRQGWRTF 388
Query: 494 XXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTR 553
++ + +++ L L +D R
Sbjct: 389 --------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ER 432
Query: 554 MDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSN 613
D QR +++H C + + G L ++G + + FA QV R+A LY + N
Sbjct: 433 PDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFIN 486
Query: 614 LSLYSPDKY-YRPSEGFMPHE 633
L LY P Y +R + MPHE
Sbjct: 487 L-LYYPFSYLFRAAHVLMPHE 506
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 172 KPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKY-MVRGLVLDKKRGNILKMDRHK-- 228
KP FES T + Y G+ + +LE S+D K+ + ++ ++ G +R +
Sbjct: 128 KPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQES 187
Query: 229 -YVKVAYHGFREMSKEEK 245
V+++ RE+SK K
Sbjct: 188 VIVEISKKQIRELSKHAK 205
>pdb|3W01|A Chain A, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W01|B Chain B, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|A Chain A, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|B Chain B, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
Length = 235
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 432 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 491
GD+S + E ++F GG + + + + + + VGD IY DI ++ K + +
Sbjct: 172 GDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIK 231
>pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
Maritima
pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
Maritima
Length = 176
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 222 LKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLF 278
++++R K +KV Y R EE++E Y + + FD + LI S A+ L
Sbjct: 107 VEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLL 163
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 428 MPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS 467
+P++ ++ +L K++NG + +GG + H+H I S
Sbjct: 287 LPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 428 MPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS 467
+P++ ++ +L K++NG + +GG + H+H I S
Sbjct: 287 LPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 365 MNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE---PESGMLLN 421
+ L G TLDG + D +FD TG PGFF + + E ESG+ N
Sbjct: 478 LGTLSGIGTLDGFRHRHPDEAAFFDTASTGKTFPGFFSPMLGEFVSETESRGSESGIFTN 537
Query: 422 T 422
T
Sbjct: 538 T 538
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,034,252
Number of Sequences: 62578
Number of extensions: 859885
Number of successful extensions: 1700
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 18
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)