Query 006585
Match_columns 639
No_of_seqs 162 out of 290
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 11:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 1E-147 3E-152 1202.1 32.1 444 146-636 1-446 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 9E-124 2E-128 963.1 23.7 446 133-636 41-494 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 3E-107 6E-112 860.0 32.1 342 146-515 1-342 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 2E-106 3E-111 852.2 25.2 416 139-609 9-424 (424)
5 TIGR01422 phosphonatase phosph 98.6 3.5E-07 7.5E-12 92.7 13.3 104 330-497 98-202 (253)
6 PRK13288 pyrophosphatase PpaX; 98.6 1.3E-06 2.9E-11 86.1 16.0 103 330-497 81-183 (214)
7 PLN03243 haloacid dehalogenase 98.6 1.3E-06 2.7E-11 90.4 15.7 101 331-496 109-209 (260)
8 TIGR03351 PhnX-like phosphonat 98.5 2.5E-06 5.4E-11 84.2 13.8 107 331-499 87-194 (220)
9 PRK13478 phosphonoacetaldehyde 98.5 1.6E-06 3.5E-11 88.9 12.7 105 330-498 100-205 (267)
10 PRK10826 2-deoxyglucose-6-phos 98.4 1.3E-05 2.7E-10 79.7 16.9 104 330-498 91-194 (222)
11 PRK13222 phosphoglycolate phos 98.4 1.6E-05 3.6E-10 78.2 17.4 103 330-497 92-194 (226)
12 PLN02940 riboflavin kinase 98.4 7.6E-06 1.6E-10 89.2 15.6 104 330-497 92-195 (382)
13 TIGR02253 CTE7 HAD superfamily 98.3 1.5E-06 3.2E-11 85.6 8.0 107 328-498 91-197 (221)
14 PRK10725 fructose-1-P/6-phosph 98.3 1.1E-05 2.3E-10 77.6 13.4 95 336-496 92-186 (188)
15 COG1011 Predicted hydrolase (H 98.1 3.1E-05 6.6E-10 76.3 12.5 107 329-500 97-203 (229)
16 PF13419 HAD_2: Haloacid dehal 98.1 7.8E-06 1.7E-10 75.5 6.9 104 327-495 73-176 (176)
17 TIGR01509 HAD-SF-IA-v3 haloaci 98.1 2.3E-05 5.1E-10 74.1 10.0 100 330-495 84-183 (183)
18 PRK10563 6-phosphogluconate ph 98.0 7.6E-05 1.7E-09 73.9 13.5 97 328-496 85-186 (221)
19 TIGR01428 HAD_type_II 2-haloal 98.0 1.1E-05 2.4E-10 78.5 7.4 103 331-498 92-194 (198)
20 PRK13226 phosphoglycolate phos 97.9 3.9E-05 8.5E-10 77.1 8.9 103 329-496 93-195 (229)
21 KOG3085 Predicted hydrolase (H 97.9 5.6E-05 1.2E-09 77.8 9.6 101 326-496 109-213 (237)
22 TIGR01454 AHBA_synth_RP 3-amin 97.8 2.5E-05 5.4E-10 76.6 6.0 103 329-496 73-175 (205)
23 PLN02770 haloacid dehalogenase 97.8 3.4E-05 7.5E-10 78.6 7.2 102 330-496 107-208 (248)
24 TIGR01548 HAD-SF-IA-hyp1 haloa 97.8 0.00025 5.4E-09 69.3 12.5 46 336-395 111-156 (197)
25 PRK09449 dUMP phosphatase; Pro 97.8 3.9E-05 8.5E-10 75.9 6.7 100 330-497 94-197 (224)
26 PRK09456 ?-D-glucose-1-phospha 97.8 3E-05 6.5E-10 76.0 5.4 102 332-497 85-186 (199)
27 PLN02919 haloacid dehalogenase 97.8 0.00039 8.4E-09 85.0 16.0 103 332-499 162-265 (1057)
28 TIGR01449 PGP_bact 2-phosphogl 97.8 5.3E-05 1.1E-09 74.0 7.0 105 327-496 81-185 (213)
29 TIGR02252 DREG-2 REG-2-like, H 97.7 4.4E-05 9.5E-10 74.5 5.4 99 331-494 105-203 (203)
30 PRK14988 GMP/IMP nucleotidase; 97.7 4.7E-05 1E-09 76.7 5.5 104 330-498 92-195 (224)
31 TIGR01662 HAD-SF-IIIA HAD-supe 97.7 0.00015 3.3E-09 66.3 8.4 101 329-497 23-132 (132)
32 PHA02597 30.2 hypothetical pro 97.6 0.00014 3.1E-09 70.8 7.7 101 330-498 73-176 (197)
33 COG0546 Gph Predicted phosphat 97.6 0.0023 4.9E-08 64.2 16.4 103 329-496 87-189 (220)
34 cd01427 HAD_like Haloacid deha 97.6 0.00013 2.7E-09 64.1 6.5 117 330-495 23-139 (139)
35 PLN02575 haloacid dehalogenase 97.6 0.00049 1.1E-08 75.4 11.6 103 331-498 216-318 (381)
36 TIGR01990 bPGM beta-phosphoglu 97.6 6.6E-05 1.4E-09 71.6 4.3 98 331-495 87-184 (185)
37 TIGR02247 HAD-1A3-hyp Epoxide 97.6 0.0001 2.3E-09 72.4 5.6 100 331-497 94-197 (211)
38 PRK13225 phosphoglycolate phos 97.6 0.00014 3.1E-09 75.9 6.9 102 330-499 141-242 (273)
39 TIGR02254 YjjG/YfnB HAD superf 97.5 0.00018 4E-09 70.5 6.7 104 330-498 96-200 (224)
40 PLN02779 haloacid dehalogenase 97.5 0.00019 4.2E-09 75.2 6.5 105 330-497 143-247 (286)
41 COG2179 Predicted hydrolase of 97.4 0.00019 4E-09 70.4 5.4 97 333-502 48-144 (175)
42 TIGR01993 Pyr-5-nucltdase pyri 97.4 0.00019 4.1E-09 69.2 5.2 103 329-495 82-184 (184)
43 TIGR02009 PGMB-YQAB-SF beta-ph 97.4 0.00043 9.4E-09 66.0 7.1 100 329-495 86-185 (185)
44 TIGR01691 enolase-ppase 2,3-di 97.4 0.00027 5.8E-09 71.9 5.9 103 331-499 95-199 (220)
45 TIGR01668 YqeG_hyp_ppase HAD s 97.3 0.00039 8.5E-09 67.3 6.1 42 457-500 99-140 (170)
46 PRK13223 phosphoglycolate phos 97.2 0.0016 3.5E-08 67.6 9.4 103 330-497 100-202 (272)
47 PRK11587 putative phosphatase; 97.1 0.0012 2.5E-08 65.7 7.3 98 330-497 82-183 (218)
48 PLN02811 hydrolase 97.1 0.0011 2.5E-08 66.0 7.1 103 333-497 80-185 (220)
49 TIGR01685 MDP-1 magnesium-depe 97.1 0.00064 1.4E-08 67.0 5.1 109 333-497 47-158 (174)
50 PRK10748 flavin mononucleotide 97.1 0.00048 1E-08 69.8 4.2 99 330-498 112-210 (238)
51 PRK06698 bifunctional 5'-methy 97.0 0.002 4.2E-08 71.8 8.4 101 330-498 329-429 (459)
52 TIGR01549 HAD-SF-IA-v1 haloaci 96.8 0.0022 4.8E-08 59.7 5.9 46 334-394 67-112 (154)
53 TIGR01656 Histidinol-ppas hist 96.8 0.0052 1.1E-07 57.9 8.1 39 455-496 107-145 (147)
54 TIGR01261 hisB_Nterm histidino 96.7 0.0052 1.1E-07 59.5 7.3 107 329-497 27-148 (161)
55 PRK08942 D,D-heptose 1,7-bisph 96.5 0.0057 1.2E-07 59.3 6.8 38 457-497 111-148 (181)
56 KOG3109 Haloacid dehalogenase- 96.5 0.037 7.9E-07 56.8 12.6 115 325-499 94-208 (244)
57 PRK06769 hypothetical protein; 96.5 0.0035 7.6E-08 60.9 5.2 41 456-499 100-140 (173)
58 PRK11590 hypothetical protein; 96.3 0.083 1.8E-06 52.7 13.7 39 330-368 94-133 (211)
59 PRK11133 serB phosphoserine ph 96.3 0.12 2.5E-06 55.8 15.5 39 330-368 180-218 (322)
60 TIGR00213 GmhB_yaeD D,D-heptos 96.1 0.016 3.5E-07 56.1 7.2 26 333-358 28-53 (176)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 95.5 0.029 6.2E-07 54.5 6.4 36 324-359 35-70 (166)
62 COG0637 Predicted phosphatase/ 95.5 0.18 3.9E-06 51.0 12.3 102 331-497 86-187 (221)
63 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.1 0.0054 1.2E-07 63.4 -0.1 103 334-498 123-226 (257)
64 PRK05446 imidazole glycerol-ph 95.1 0.062 1.3E-06 58.7 7.7 110 330-497 29-149 (354)
65 TIGR01491 HAD-SF-IB-PSPlk HAD- 94.9 0.091 2E-06 50.7 7.7 37 332-368 81-117 (201)
66 TIGR01686 FkbH FkbH-like domai 94.9 0.14 3E-06 54.6 9.7 49 333-394 33-84 (320)
67 TIGR00338 serB phosphoserine p 94.0 0.12 2.7E-06 50.9 6.5 39 330-368 84-122 (219)
68 TIGR01452 PGP_euk phosphoglyco 93.9 0.016 3.5E-07 60.3 -0.0 37 458-496 211-247 (279)
69 PRK09552 mtnX 2-hydroxy-3-keto 93.4 0.37 7.9E-06 48.2 8.7 40 330-369 73-112 (219)
70 TIGR01681 HAD-SF-IIIC HAD-supe 93.4 0.061 1.3E-06 49.8 2.9 59 333-398 31-90 (128)
71 PLN02954 phosphoserine phospha 93.3 0.47 1E-05 47.0 9.3 37 332-368 85-121 (224)
72 TIGR01459 HAD-SF-IIA-hyp4 HAD- 92.9 0.03 6.6E-07 56.9 0.1 38 458-496 204-241 (242)
73 COG0647 NagD Predicted sugar p 92.7 0.43 9.4E-06 50.4 8.3 31 468-499 208-238 (269)
74 PF09419 PGP_phosphatase: Mito 92.4 0.54 1.2E-05 46.5 8.0 29 466-495 135-163 (168)
75 TIGR01684 viral_ppase viral ph 92.3 0.26 5.6E-06 52.8 6.1 67 314-399 133-200 (301)
76 TIGR01490 HAD-SF-IB-hyp1 HAD-s 91.9 0.5 1.1E-05 45.9 7.1 36 333-368 89-124 (202)
77 TIGR03333 salvage_mtnX 2-hydro 91.7 1.3 2.8E-05 44.2 10.0 41 328-368 67-107 (214)
78 TIGR01493 HAD-SF-IA-v2 Haloaci 91.7 0.053 1.1E-06 51.5 0.1 42 331-393 90-131 (175)
79 PF00702 Hydrolase: haloacid d 91.6 0.29 6.4E-06 47.2 5.1 36 333-368 129-164 (215)
80 PHA03398 viral phosphatase sup 91.5 0.39 8.4E-06 51.5 6.3 66 314-398 135-201 (303)
81 TIGR02726 phenyl_P_delta pheny 91.2 0.13 2.8E-06 50.5 2.2 56 310-368 15-71 (169)
82 PF13242 Hydrolase_like: HAD-h 90.8 0.18 4E-06 42.2 2.5 43 456-500 11-53 (75)
83 TIGR01489 DKMTPPase-SF 2,3-dik 89.5 0.99 2.1E-05 42.9 6.7 51 330-394 71-121 (188)
84 TIGR01670 YrbI-phosphatas 3-de 88.4 0.3 6.4E-06 46.6 2.2 30 339-368 36-65 (154)
85 KOG2469 IMP-GMP specific 5'-nu 88.2 0.0087 1.9E-07 65.7 -9.3 199 140-365 37-237 (424)
86 TIGR01459 HAD-SF-IIA-hyp4 HAD- 87.8 0.83 1.8E-05 46.5 5.2 50 332-395 25-77 (242)
87 PRK11009 aphA acid phosphatase 87.0 1.8 3.9E-05 44.9 7.1 67 317-395 100-170 (237)
88 TIGR01672 AphA HAD superfamily 86.8 1.7 3.8E-05 45.0 6.9 50 331-394 114-167 (237)
89 smart00577 CPDc catalytic doma 86.6 1.6 3.4E-05 41.4 6.0 54 328-395 42-95 (148)
90 TIGR01457 HAD-SF-IIA-hyp2 HAD- 85.4 0.6 1.3E-05 48.0 2.7 39 458-498 187-225 (249)
91 TIGR02250 FCP1_euk FCP1-like p 83.9 2.3 5E-05 41.2 5.8 43 325-368 52-94 (156)
92 PF06888 Put_Phosphatase: Puta 83.8 6.5 0.00014 40.9 9.4 56 331-403 71-128 (234)
93 PRK09484 3-deoxy-D-manno-octul 81.1 1.2 2.5E-05 43.8 2.6 31 338-368 55-85 (183)
94 TIGR01456 CECR5 HAD-superfamil 80.7 0.92 2E-05 48.5 1.9 29 468-497 264-292 (321)
95 PLN02645 phosphoglycolate phos 80.2 1.2 2.5E-05 47.5 2.5 38 458-497 239-276 (311)
96 TIGR02251 HIF-SF_euk Dullard-l 79.1 3.9 8.6E-05 39.5 5.6 55 325-393 36-90 (162)
97 PTZ00445 p36-lilke protein; Pr 78.9 2.5 5.5E-05 43.5 4.3 146 304-497 49-206 (219)
98 PF13344 Hydrolase_6: Haloacid 78.8 3.1 6.7E-05 37.3 4.4 36 333-368 16-51 (101)
99 TIGR01460 HAD-SF-IIA Haloacid 77.5 1.6 3.5E-05 44.5 2.5 38 457-496 196-234 (236)
100 PHA02530 pseT polynucleotide k 77.5 2.3 5.1E-05 44.2 3.7 55 333-400 189-243 (300)
101 PRK14988 GMP/IMP nucleotidase; 77.3 2.6 5.6E-05 42.6 3.8 43 152-197 5-48 (224)
102 TIGR01663 PNK-3'Pase polynucle 75.5 5.4 0.00012 46.1 6.2 36 323-358 189-224 (526)
103 TIGR01488 HAD-SF-IB Haloacid D 75.3 4.8 0.0001 38.0 4.9 38 331-368 73-110 (177)
104 TIGR02253 CTE7 HAD superfamily 75.3 3.3 7.2E-05 40.7 3.9 36 157-195 2-37 (221)
105 PRK10444 UMP phosphatase; Prov 74.6 2.2 4.9E-05 44.1 2.6 39 457-497 182-220 (248)
106 TIGR01993 Pyr-5-nucltdase pyri 73.9 4.6 9.9E-05 38.9 4.4 38 158-197 1-39 (184)
107 PF05152 DUF705: Protein of un 72.6 7.4 0.00016 41.8 5.9 66 324-403 135-200 (297)
108 PRK10748 flavin mononucleotide 72.0 3.9 8.5E-05 41.5 3.6 33 154-188 7-39 (238)
109 PRK11587 putative phosphatase; 71.7 3.7 8.1E-05 40.8 3.3 35 156-196 2-36 (218)
110 PRK08238 hypothetical protein; 69.1 8 0.00017 44.1 5.6 36 333-368 74-109 (479)
111 TIGR03752 conj_TIGR03752 integ 68.6 19 0.00041 41.1 8.3 76 496-580 68-144 (472)
112 PLN02954 phosphoserine phospha 65.0 5.9 0.00013 39.2 3.2 25 468-494 170-194 (224)
113 PRK03669 mannosyl-3-phosphogly 64.7 8.2 0.00018 39.9 4.3 42 152-196 2-43 (271)
114 PLN02770 haloacid dehalogenase 64.6 6.1 0.00013 40.4 3.3 36 154-195 19-54 (248)
115 PRK13582 thrH phosphoserine ph 64.3 5.8 0.00013 38.6 2.9 36 332-368 69-104 (205)
116 PLN02645 phosphoglycolate phos 64.1 9.5 0.00021 40.6 4.7 47 314-368 35-81 (311)
117 COG0561 Cof Predicted hydrolas 63.8 6.5 0.00014 40.1 3.3 39 156-197 2-40 (264)
118 PRK09449 dUMP phosphatase; Pro 63.6 6.4 0.00014 39.0 3.1 17 156-172 2-18 (224)
119 COG0731 Fe-S oxidoreductases [ 62.9 6.6 0.00014 42.3 3.2 46 333-398 94-140 (296)
120 PLN02779 haloacid dehalogenase 61.4 8.6 0.00019 40.5 3.8 36 155-195 38-73 (286)
121 TIGR01487 SPP-like sucrose-pho 60.7 8.4 0.00018 38.1 3.4 38 157-197 1-38 (215)
122 PF10146 zf-C4H2: Zinc finger- 59.7 60 0.0013 33.8 9.4 25 550-574 79-103 (230)
123 PRK13582 thrH phosphoserine ph 59.0 23 0.0005 34.4 6.1 16 466-482 143-158 (205)
124 TIGR02009 PGMB-YQAB-SF beta-ph 58.5 10 0.00022 36.0 3.4 16 157-172 1-16 (185)
125 PF08645 PNK3P: Polynucleotide 58.2 9.1 0.0002 37.1 3.0 34 323-356 21-54 (159)
126 TIGR02252 DREG-2 REG-2-like, H 57.3 9.8 0.00021 37.0 3.2 32 158-195 1-32 (203)
127 PRK13225 phosphoglycolate phos 57.3 8.9 0.00019 40.3 3.0 44 144-195 51-94 (273)
128 TIGR01689 EcbF-BcbF capsule bi 55.6 9.3 0.0002 36.1 2.6 15 158-172 2-16 (126)
129 TIGR00338 serB phosphoserine p 54.1 10 0.00022 37.4 2.7 33 458-493 160-192 (219)
130 PRK13226 phosphoglycolate phos 53.7 12 0.00027 37.6 3.3 34 156-195 11-44 (229)
131 TIGR02254 YjjG/YfnB HAD superf 52.7 8.6 0.00019 37.6 1.9 17 157-173 1-17 (224)
132 PF08645 PNK3P: Polynucleotide 51.8 7.8 0.00017 37.6 1.4 17 158-174 1-17 (159)
133 PRK10530 pyridoxal phosphate ( 51.6 17 0.00036 37.0 3.9 33 455-490 204-236 (272)
134 PRK10884 SH3 domain-containing 50.8 81 0.0018 32.3 8.6 15 494-508 93-107 (206)
135 PF12325 TMF_TATA_bd: TATA ele 50.7 98 0.0021 29.2 8.5 44 491-534 13-57 (120)
136 TIGR01458 HAD-SF-IIA-hyp3 HAD- 50.6 20 0.00043 37.2 4.2 36 333-368 23-58 (257)
137 PRK13223 phosphoglycolate phos 49.7 15 0.00032 38.4 3.2 34 156-195 12-45 (272)
138 TIGR02338 gimC_beta prefoldin, 48.8 1.4E+02 0.0031 27.1 9.1 81 497-580 3-109 (110)
139 PLN02575 haloacid dehalogenase 48.5 20 0.00043 39.9 4.1 36 156-196 130-165 (381)
140 TIGR01457 HAD-SF-IIA-hyp2 HAD- 48.4 25 0.00054 36.2 4.6 22 334-355 20-41 (249)
141 TIGR01990 bPGM beta-phosphoglu 48.2 16 0.00034 34.7 2.9 31 159-195 1-31 (185)
142 TIGR01544 HAD-SF-IE haloacid d 48.2 1.2E+02 0.0027 32.4 9.8 39 330-368 120-158 (277)
143 TIGR01662 HAD-SF-IIIA HAD-supe 47.4 10 0.00023 34.4 1.5 13 158-170 1-13 (132)
144 PF00834 Ribul_P_3_epim: Ribul 46.6 42 0.00092 34.0 5.8 51 334-402 92-142 (201)
145 PF14723 SSFA2_C: Sperm-specif 46.4 1.3E+02 0.0027 30.4 8.7 34 539-576 136-169 (179)
146 smart00775 LNS2 LNS2 domain. T 45.7 26 0.00055 33.9 3.9 36 333-368 29-64 (157)
147 PTZ00174 phosphomannomutase; P 45.0 25 0.00055 35.9 4.0 37 156-195 4-40 (247)
148 TIGR01449 PGP_bact 2-phosphogl 44.8 19 0.00041 35.1 2.9 30 160-195 1-30 (213)
149 PRK01158 phosphoglycolate phos 44.7 22 0.00048 35.2 3.5 36 157-195 3-38 (230)
150 PRK10513 sugar phosphate phosp 44.7 21 0.00046 36.3 3.4 37 156-195 2-38 (270)
151 PF12710 HAD: haloacid dehalog 44.2 25 0.00053 33.5 3.5 35 334-368 92-126 (192)
152 TIGR02137 HSK-PSP phosphoserin 43.7 34 0.00073 34.4 4.6 37 331-368 68-104 (203)
153 PF13851 GAS: Growth-arrest sp 43.7 1.6E+02 0.0034 30.0 9.3 44 515-568 87-130 (201)
154 PF10146 zf-C4H2: Zinc finger- 42.0 1.7E+02 0.0037 30.6 9.5 27 549-575 64-90 (230)
155 PRK10444 UMP phosphatase; Prov 40.9 34 0.00073 35.5 4.2 36 333-368 19-54 (248)
156 PF04111 APG6: Autophagy prote 40.9 1.1E+02 0.0024 33.1 8.3 39 497-535 46-85 (314)
157 PRK00192 mannosyl-3-phosphogly 40.3 29 0.00064 35.8 3.7 36 157-195 4-39 (273)
158 TIGR01428 HAD_type_II 2-haloal 40.2 15 0.00032 35.7 1.4 17 157-173 1-17 (198)
159 PF06941 NT5C: 5' nucleotidase 39.4 15 0.00033 36.0 1.3 29 331-359 73-101 (191)
160 KOG1937 Uncharacterized conser 38.7 44 0.00094 38.1 4.8 41 551-591 402-442 (521)
161 TIGR02247 HAD-1A3-hyp Epoxide 38.2 17 0.00037 35.7 1.4 16 157-172 2-17 (211)
162 TIGR01545 YfhB_g-proteo haloac 37.5 46 0.001 33.5 4.5 37 332-368 95-132 (210)
163 TIGR01675 plant-AP plant acid 37.3 40 0.00087 35.1 4.1 37 334-370 123-159 (229)
164 TIGR01491 HAD-SF-IB-PSPlk HAD- 37.3 18 0.00038 34.8 1.4 35 457-494 154-188 (201)
165 PLN02423 phosphomannomutase 37.1 35 0.00076 35.1 3.6 34 155-190 4-38 (245)
166 TIGR01684 viral_ppase viral ph 36.1 21 0.00045 38.7 1.8 49 150-200 119-169 (301)
167 TIGR01689 EcbF-BcbF capsule bi 34.8 76 0.0017 30.0 5.1 66 314-395 8-87 (126)
168 COG0560 SerB Phosphoserine pho 34.6 59 0.0013 33.0 4.7 39 330-368 76-114 (212)
169 TIGR02461 osmo_MPG_phos mannos 34.3 36 0.00077 34.6 3.1 33 159-195 1-33 (225)
170 PF00702 Hydrolase: haloacid d 34.1 21 0.00045 34.4 1.3 28 456-485 185-212 (215)
171 TIGR01454 AHBA_synth_RP 3-amin 34.1 37 0.0008 33.2 3.1 12 160-171 1-12 (205)
172 PRK10976 putative hydrolase; P 33.9 21 0.00045 36.4 1.3 13 157-169 2-14 (266)
173 TIGR01672 AphA HAD superfamily 33.6 21 0.00045 37.2 1.3 14 159-172 65-78 (237)
174 TIGR02463 MPGP_rel mannosyl-3- 33.1 46 0.001 32.9 3.6 25 455-481 184-208 (221)
175 KOG2882 p-Nitrophenyl phosphat 33.1 36 0.00079 36.9 3.0 59 448-507 219-280 (306)
176 PF00038 Filament: Intermediat 32.9 2.9E+02 0.0063 29.1 9.8 63 512-580 228-290 (312)
177 PF11019 DUF2608: Protein of u 32.8 1.1E+02 0.0023 32.1 6.4 47 323-369 73-119 (252)
178 PF13419 HAD_2: Haloacid dehal 32.6 24 0.00051 32.3 1.4 31 160-195 1-31 (176)
179 TIGR01509 HAD-SF-IA-v3 haloaci 31.8 16 0.00034 34.4 0.0 16 159-174 1-16 (183)
180 TIGR01533 lipo_e_P4 5'-nucleot 31.4 62 0.0013 34.3 4.4 36 333-368 120-155 (266)
181 COG0560 SerB Phosphoserine pho 31.1 37 0.0008 34.5 2.6 32 156-189 4-35 (212)
182 PF04111 APG6: Autophagy prote 30.7 2.8E+02 0.0061 30.1 9.3 17 555-571 109-125 (314)
183 PF03031 NIF: NLI interacting 30.7 53 0.0012 30.9 3.5 42 327-369 32-73 (159)
184 PF12689 Acid_PPase: Acid Phos 30.7 25 0.00054 34.9 1.2 11 158-168 4-14 (169)
185 TIGR01493 HAD-SF-IA-v2 Haloaci 30.5 22 0.00047 33.7 0.7 26 459-486 149-174 (175)
186 PRK08883 ribulose-phosphate 3- 30.3 35 0.00076 35.0 2.3 106 334-479 93-200 (220)
187 TIGR01549 HAD-SF-IA-v1 haloaci 30.2 36 0.00079 31.4 2.2 25 458-485 127-151 (154)
188 KOG1615 Phosphoserine phosphat 29.9 1.4E+02 0.0031 30.9 6.4 44 325-368 77-125 (227)
189 PF13304 AAA_21: AAA domain; P 29.4 18 0.00039 34.3 -0.0 38 321-358 261-300 (303)
190 TIGR01482 SPP-subfamily Sucros 29.2 37 0.0008 33.4 2.2 33 160-195 1-33 (225)
191 smart00775 LNS2 LNS2 domain. T 29.2 52 0.0011 31.8 3.1 14 159-172 1-14 (157)
192 PLN02887 hydrolase family prot 28.9 58 0.0013 38.3 4.0 38 156-196 307-344 (580)
193 PRK15126 thiamin pyrimidine py 28.8 29 0.00062 35.7 1.4 13 157-169 2-14 (272)
194 COG1907 Predicted archaeal sug 28.6 1.8E+02 0.0039 31.7 7.2 45 561-605 243-287 (312)
195 TIGR00685 T6PP trehalose-phosp 28.4 31 0.00067 35.3 1.5 39 456-496 173-217 (244)
196 KOG2914 Predicted haloacid-hal 27.8 69 0.0015 33.2 3.9 125 297-497 72-197 (222)
197 TIGR01512 ATPase-IB2_Cd heavy 27.6 60 0.0013 37.4 3.8 35 334-368 365-400 (536)
198 KOG2961 Predicted hydrolase (H 27.2 45 0.00099 33.2 2.3 49 452-501 121-172 (190)
199 PHA03398 viral phosphatase sup 27.1 31 0.00068 37.4 1.3 43 154-199 125-170 (303)
200 TIGR01525 ATPase-IB_hvy heavy 27.1 66 0.0014 37.1 4.0 35 334-368 387-422 (556)
201 TIGR01452 PGP_euk phosphoglyco 26.5 63 0.0014 33.7 3.4 25 333-357 20-44 (279)
202 PF09802 Sec66: Preprotein tra 26.5 2.7E+02 0.0057 28.5 7.6 16 472-487 41-56 (190)
203 COG0561 Cof Predicted hydrolas 26.1 72 0.0016 32.5 3.7 35 334-368 23-57 (264)
204 TIGR02417 fruct_sucro_rep D-fr 25.7 73 0.0016 33.0 3.7 68 142-211 238-327 (327)
205 PRK09343 prefoldin subunit bet 24.8 5.2E+02 0.011 24.1 8.8 82 495-579 5-112 (121)
206 PRK09552 mtnX 2-hydroxy-3-keto 24.6 43 0.00093 33.4 1.7 30 458-490 152-181 (219)
207 TIGR01460 HAD-SF-IIA Haloacid 24.4 97 0.0021 31.6 4.3 35 334-368 17-51 (236)
208 COG5610 Predicted hydrolase (H 24.1 2E+02 0.0043 33.4 6.8 116 325-502 92-208 (635)
209 PRK10328 DNA binding protein, 24.1 3.9E+02 0.0085 25.7 8.0 65 503-576 5-69 (134)
210 TIGR03185 DNA_S_dndD DNA sulfu 24.0 2.5E+02 0.0053 33.3 8.0 73 497-569 212-286 (650)
211 TIGR01484 HAD-SF-IIB HAD-super 23.8 87 0.0019 30.5 3.6 36 332-367 18-53 (204)
212 COG4850 Uncharacterized conser 23.7 1.1E+02 0.0024 33.9 4.6 61 334-395 199-260 (373)
213 cd05014 SIS_Kpsf KpsF-like pro 23.7 72 0.0016 28.7 2.8 26 333-358 60-85 (128)
214 COG1579 Zn-ribbon protein, pos 23.6 5.7E+02 0.012 27.1 9.6 68 499-579 94-162 (239)
215 PF02358 Trehalose_PPase: Treh 23.4 58 0.0013 32.9 2.4 29 162-190 2-30 (235)
216 PRK08745 ribulose-phosphate 3- 23.3 1E+02 0.0022 31.9 4.1 106 334-479 97-204 (223)
217 TIGR01670 YrbI-phosphatas 3-de 22.8 42 0.00092 31.9 1.2 14 157-170 1-14 (154)
218 KOG2264 Exostosin EXT1L [Signa 22.8 3.1E+02 0.0066 32.6 8.0 92 469-578 56-147 (907)
219 PF08826 DMPK_coil: DMPK coile 22.3 4.8E+02 0.01 22.0 7.5 19 499-520 6-24 (61)
220 KOG0259 Tyrosine aminotransfer 22.3 58 0.0012 36.7 2.2 48 446-496 212-284 (447)
221 PRK06698 bifunctional 5'-methy 22.0 66 0.0014 36.2 2.7 15 157-171 241-255 (459)
222 COG4359 Uncharacterized conser 21.8 9.1E+02 0.02 25.1 10.3 58 310-370 55-112 (220)
223 PF11932 DUF3450: Protein of u 21.4 5.4E+02 0.012 26.6 9.1 25 551-575 90-114 (251)
224 PF07106 TBPIP: Tat binding pr 21.3 7.6E+02 0.016 23.9 10.4 83 466-571 53-135 (169)
225 PF03961 DUF342: Protein of un 21.2 7.2E+02 0.016 28.1 10.7 82 489-576 318-406 (451)
226 PF10018 Med4: Vitamin-D-recep 21.1 5E+02 0.011 25.9 8.4 11 596-606 89-99 (188)
227 PRK09484 3-deoxy-D-manno-octul 21.0 47 0.001 32.6 1.1 15 156-170 20-34 (183)
228 TIGR02137 HSK-PSP phosphoserin 20.9 39 0.00084 34.0 0.5 12 159-170 3-14 (203)
229 TIGR01511 ATPase-IB1_Cu copper 20.9 96 0.0021 36.0 3.8 35 334-368 408-442 (562)
230 TIGR00255 conserved hypothetic 20.7 3.5E+02 0.0075 29.3 7.6 32 499-530 205-236 (291)
231 COG0241 HisB Histidinol phosph 20.6 91 0.002 31.4 3.0 27 329-355 23-55 (181)
232 PRK11820 hypothetical protein; 20.5 3.5E+02 0.0077 29.1 7.6 32 499-530 202-233 (288)
233 COG2841 Uncharacterized protei 20.3 5.3E+02 0.012 22.5 7.1 67 497-575 3-69 (72)
234 TIGR02463 MPGP_rel mannosyl-3- 20.1 1.1E+02 0.0025 30.1 3.7 33 336-368 21-53 (221)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=1.4e-147 Score=1202.11 Aligned_cols=444 Identities=46% Similarity=0.778 Sum_probs=358.7
Q ss_pred eEEeCcccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCCCcEEeec
Q 006585 146 IFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKRGNILKMD 225 (639)
Q Consensus 146 VF~NR~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ell~~~yDp~F~iRGLv~D~~~GnlLKlD 225 (639)
|||||+|+|++|+|||||||||||+|++++++.|||++++++||+++|||++|++++|||+|+|||||||+++|||||||
T Consensus 1 VF~Nr~l~l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld 80 (448)
T PF05761_consen 1 VFVNRSLNLKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLD 80 (448)
T ss_dssp -EESS-EECCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEB
T ss_pred CeeCCccccccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccCccCCHHHHHHHhCCccccccCCCCCeeeeccccchhHHHHHHHHHHHHh--cCCCCCCCCCChHHHHH
Q 006585 226 RHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMD--NNPGKDSKSTDYVRMYK 303 (639)
Q Consensus 226 ~~g~I~~a~HG~~~Ls~eEi~~~Yg~~~i~~~~~~~~~~~ldTlFslpEa~L~A~lVD~~d--~~~~~~~~~~~y~~l~~ 303 (639)
++|+|++||||+++|+.|||+++||+++++..... +|..++|+||+||+|||||+||+|| .+... .+|..||+
T Consensus 81 ~~g~I~~a~hG~~~l~~eei~~~Y~~~~i~~~~~~-~~~~l~tlFslpe~~L~a~lvd~~d~~~~~~~----~~~~~l~~ 155 (448)
T PF05761_consen 81 RFGYILRAYHGFRPLSDEEIRELYGNKFIPLSDDS-RFFQLNTLFSLPEAYLFAQLVDYFDVEDGNIE----YDYRSLYQ 155 (448)
T ss_dssp TTSBEEEEEETTEEE-HHHHCCCCTTSB--TTSTT-TEEEE-SCCHHHHHHHHHHHHHHHHECCTTCC----EEHHHHHH
T ss_pred CCCcEEEEEeccccCCHHHHHHhcCCcccccchhh-HHHHHhhHhhhhHHHHHHHHHHHhhcccCCCC----CCHHHHHH
Confidence 99999999999999999999999999999754333 8999999999999999999999999 44332 47999999
Q ss_pred HHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCC
Q 006585 304 DVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSD 383 (639)
Q Consensus 304 DVr~Avd~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~d 383 (639)
||++||++||.+|.||++|++||+|||+|+|+|++||++||++||||||||||+|+|||.+|+|++|+++ +.++|
T Consensus 156 DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~-----~~~~d 230 (448)
T PF05761_consen 156 DVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFL-----GEDPD 230 (448)
T ss_dssp HHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCS-----STTT-
T ss_pred HHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCC-----CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999665 55669
Q ss_pred CccCccEEEEccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhc
Q 006585 384 WLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLS 463 (639)
Q Consensus 384 WrdyFDvVIv~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~ 463 (639)
||+|||||||+|+||+||+++ +|||+|++++|++.++. .++ ++++|+||+|||+.+|++++|
T Consensus 231 W~dlFDvVIv~A~KP~FF~~~--~pfr~vd~~~g~l~~~~------~~~----------~l~~g~vY~gGn~~~l~~ll~ 292 (448)
T PF05761_consen 231 WRDLFDVVIVDARKPGFFTEG--RPFREVDTETGKLKWGK------YVG----------PLEKGKVYSGGNWDQLHKLLG 292 (448)
T ss_dssp GGGCECEEEES--CCHHHCT-----EEEEETTTSSEECS---------S----------S--TC-EEEE--HHHHHHHCT
T ss_pred hhhheeEEEEcCCCCcccCCC--CceEEEECCCCcccccc------ccc----------cccCCCEeecCCHHHHHHHHc
Confidence 999999999999999999985 59999999999988652 234 459999999999999999999
Q ss_pred ccCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 006585 464 IESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGID 543 (639)
Q Consensus 464 ~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~ 543 (639)
| +|++||||||||||||++||+.+||||+|||||||+||++|++.++.+++|+.|+.+++++++.+++++
T Consensus 293 ~-~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~--------- 362 (448)
T PF05761_consen 293 W-RGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEELQELEELLEELQDHLDQLR--------- 362 (448)
T ss_dssp ---GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHHHHHCHHHHCHHHHHH---------
T ss_pred c-CCCeEEEECCchhhhhhhhccccceEEEEEehhhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHhcccc---------
Confidence 9 699999999999999999999999999999999999999999999999999999999988888776443
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccchhhhhhhcccccccccccccccCCCCccc
Q 006585 544 VDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYY 623 (639)
Q Consensus 544 ~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~~~Fn~~~GSlFRtG~~~S~FA~Qv~RyADLYtS~vsNLl~Ys~~~~F 623 (639)
..++++..++++++.++++.+++++.|||+||||||||+++|+||+||+||||||||+|+|||+|||+++|
T Consensus 363 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~~~F 433 (448)
T PF05761_consen 363 ---------SSSELRPDISELRKERRELRREMKELFNPQFGSLFRTGHNPSYFARQVERYADLYTSSVSNLLNYSPNYYF 433 (448)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETTEEBHHHHHHHHH-SEEESSHHHHHHS-TT-EE
T ss_pred ---------cchhhHHHHHHHHHHHHHHHHHHhhhcccchHHHHhcCCCccHHHHHHHHHhhhhhccccHHHhCCcceEE
Confidence 12233444445555555666666789999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCC
Q 006585 624 RPSEGFMPHEFEI 636 (639)
Q Consensus 624 r~~~~~mPHE~~~ 636 (639)
||++++||||+++
T Consensus 434 r~~~~~lpHE~~~ 446 (448)
T PF05761_consen 434 RPPRDLLPHESTV 446 (448)
T ss_dssp -------CCG---
T ss_pred eCCCCCCCCCCCC
Confidence 9999999999975
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9e-124 Score=963.12 Aligned_cols=446 Identities=30% Similarity=0.543 Sum_probs=411.3
Q ss_pred CCCCCCCCCCCCceEEeCcccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccce
Q 006585 133 SPGGARKIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGL 212 (639)
Q Consensus 133 ~~~~~~~~~~~~~VF~NR~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ell~~~yDp~F~iRGL 212 (639)
-|+..+.+.++++||+|++++|++|++||||||||||+|.+ .++.|||+++++.||+++.||+.|++++|||+|+||||
T Consensus 41 ip~~i~sllnp~aiy~nne~sl~dievygfdydytla~ys~-hlh~lif~~ard~lvn~frYPe~i~q~eYdPnFaIRGL 119 (510)
T KOG2470|consen 41 IPEAINSLLNPQAIYVNNELSLDDIEVYGFDYDYTLAHYSS-HLHSLIFDLARDHLVNEFRYPEVIRQYEYDPNFAIRGL 119 (510)
T ss_pred CCHHHHhccChhheeecCcccccceeEeccccchhHHHHHH-HHHHHHHHHHHHHHHHhccChHHhhhcccCCCcccchh
Confidence 34555567899999999999999999999999999999996 68999999999999999999999999999999999999
Q ss_pred eeecCCCcEEeecCCCcEEE--EeccCccCCHHHHHHHhCCcccccc----CCC--CCeeeeccccchhHHHHHHHHHHH
Q 006585 213 VLDKKRGNILKMDRHKYVKV--AYHGFREMSKEEKVEAYGNTLIRDA----FDE--PDYALIDTLFSLAEAYLFAQLVDF 284 (639)
Q Consensus 213 v~D~~~GnlLKlD~~g~I~~--a~HG~~~Ls~eEi~~~Yg~~~i~~~----~~~--~~~~~ldTlFslpEa~L~A~lVD~ 284 (639)
++|+++|.|+|+|+||+|+. ||+|.+.++++||.++||+.+|+.. |.+ +....+.++||+||+||+||+|+|
T Consensus 120 hYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~q~~g~~~k~~~mvqlmDiFs~pEmcLls~vveY 199 (510)
T KOG2470|consen 120 HYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLDQMSGFYGKGSKMVQLMDIFSLPEMCLLSCVVEY 199 (510)
T ss_pred hhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHHHhcCccCCCchHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999999998732 222 234445559999999999999999
Q ss_pred HhcCCCCCCCCCChHHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHH
Q 006585 285 MDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIV 364 (639)
Q Consensus 285 ~d~~~~~~~~~~~y~~l~~DVr~Avd~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~v 364 (639)
|..++.++ +...+|+||++||..||+.|.+ +|.+|.||||.++|++..+|.+|+++|||+||||||+|.|+|.+
T Consensus 200 F~~~~lef----d~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~G 273 (510)
T KOG2470|consen 200 FLDNKLEF----DPSHLYKDVNDAIRDVHRKGHM--KIESDLEKYIERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKG 273 (510)
T ss_pred HHhccccC----CHHHHHHhHHHHHHHhhhhhhH--HHhhchHHHhhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcC
Confidence 99999887 4589999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccC
Q 006585 365 MNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKN 444 (639)
Q Consensus 365 M~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~ 444 (639)
|+|++| +|||++||||||+|+||.||++. ++||+..|.++|.+. |+++.++
T Consensus 274 M~flvG-----------~~WRdlFDVVIvqA~KP~Fftde-~rPfR~~dek~~sl~-----------------wdkv~kl 324 (510)
T KOG2470|consen 274 MRFLVG-----------DDWRDLFDVVIVQANKPEFFTDE-RRPFRKYDEKRGSLL-----------------WDKVDKL 324 (510)
T ss_pred ceeeeC-----------ccHHhhhheeEEecCCCcccccc-cCcchhhcccccchh-----------------hhhhhhc
Confidence 999999 89999999999999999999995 668888787766543 7788889
Q ss_pred CCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006585 445 GTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERD 524 (639)
Q Consensus 445 ~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~L~~L~~~~~ 524 (639)
++|+||.+||+.+|.+++|| +|++|||||||+|||+.+...++||||+|||||||+||+++|++ +++.++.||+.+++
T Consensus 325 ekgkiYy~G~l~~flelt~W-rG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e-~y~~s~~w~q~lt~ 402 (510)
T KOG2470|consen 325 EKGKIYYQGNLKSFLELTGW-RGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQNTE-QYRFSQTWLQILTG 402 (510)
T ss_pred ccCceeeeccHHHHHHHhcc-CCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhccHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999 89999999999999999999999999999999999999999975 58899999999999
Q ss_pred HHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccchhhhhhhccc
Q 006585 525 LIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFA 604 (639)
Q Consensus 525 ~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~~~Fn~~~GSlFRtG~~~S~FA~Qv~RyA 604 (639)
+||+. |. ...++.+..|++|.+||+++|+.+++ +||.+|||+|||.+++|+|++++.|||
T Consensus 403 Ller~-q~------------~rseasq~~L~ew~~eRq~lR~~tK~-------~FN~qFGs~FrT~~nptyFsrrl~rfa 462 (510)
T KOG2470|consen 403 LLERM-QA------------QRSEASQSVLDEWMKERQELRDTTKQ-------MFNAQFGSTFRTDHNPTYFSRRLHRFA 462 (510)
T ss_pred HHHHH-Hh------------hhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcceeeccCCccHHHHHHHHHH
Confidence 99884 31 12244678999999999999999975 699999999999999999999999999
Q ss_pred ccccccccccccCCCCcccccCCCCCCCCcCC
Q 006585 605 CLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEI 636 (639)
Q Consensus 605 DLYtS~vsNLl~Ys~~~~Fr~~~~~mPHE~~~ 636 (639)
|||||+++|||+|++.|+|||+|++||||..+
T Consensus 463 DiYts~lsnlL~y~~~htfYprr~~mpHe~~~ 494 (510)
T KOG2470|consen 463 DIYTSSLSNLLNYRVEHTFYPRRTPMPHEVPV 494 (510)
T ss_pred HHHhccHHHHHhcCcccccCCcCCCCcccccc
Confidence 99999999999999999999999999999865
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=3e-107 Score=860.01 Aligned_cols=342 Identities=46% Similarity=0.799 Sum_probs=318.5
Q ss_pred eEEeCcccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCCCcEEeec
Q 006585 146 IFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKRGNILKMD 225 (639)
Q Consensus 146 VF~NR~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ell~~~yDp~F~iRGLv~D~~~GnlLKlD 225 (639)
|||||+|+|++|+|||||||||||+|+++++|.|||++++++||+.+|||++|++++|||+|+||||++|+++|||||||
T Consensus 1 if~nr~l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld 80 (343)
T TIGR02244 1 VFVNRELNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLD 80 (343)
T ss_pred CeeCCccccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEc
Confidence 89999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred CCCcEEEEeccCccCCHHHHHHHhCCccccccCCCCCeeeeccccchhHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q 006585 226 RHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDV 305 (639)
Q Consensus 226 ~~g~I~~a~HG~~~Ls~eEi~~~Yg~~~i~~~~~~~~~~~ldTlFslpEa~L~A~lVD~~d~~~~~~~~~~~y~~l~~DV 305 (639)
++|+|++|+||+++|++|||.++||++++... .+++|.++||+|||||||||||+||+||+++.. ....+|.+||+||
T Consensus 81 ~~g~I~~~~hG~~~l~~~e~~~~Y~~~~~~~~-~~~~~~~l~tlF~lpe~~L~a~lvd~~~~~~~~-~~~~~~~~~~~dv 158 (343)
T TIGR02244 81 RFGNILRGYHGLRPLSDKEVQEIYGNKYISRS-NGDRYYLLDTLFSLPEACLIAQLVDYFDDHPKG-PLAFDYRQIYQDV 158 (343)
T ss_pred CCCcEEEEecCCccCCHHHHHHHcCccccCCC-CCccEEEecccccchHHHHHHHHHHHHhccccC-CCCCCHHHHHHHH
Confidence 99999999999999999999999999998632 344999999999999999999999999987431 1124899999999
Q ss_pred HHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCc
Q 006585 306 RAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWL 385 (639)
Q Consensus 306 r~Avd~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWr 385 (639)
++||++||.+|.||++|++||++||+++|.++.+|++||++|+|+||+|||+++||+.+|+|++|+++ .+++|+
T Consensus 159 ~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~------~~~~w~ 232 (343)
T TIGR02244 159 RDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL------GEHDWR 232 (343)
T ss_pred HHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc------cccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999988543 568999
Q ss_pred cCccEEEEccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhccc
Q 006585 386 LYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIE 465 (639)
Q Consensus 386 dyFDvVIv~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~ 465 (639)
+|||+||++|+||+||++ ++||++|++++|.++++. +..+++|+||+||||.+|++++++
T Consensus 233 ~yFD~IIt~a~KP~FF~~--~~pf~~v~~~~g~~~~~~-----------------~~~l~~g~vY~gGn~~~~~~~l~~- 292 (343)
T TIGR02244 233 DYFDVVIVDARKPGFFTE--GRPFRQVDVETGSLKWGE-----------------VDGLEPGKVYSGGSLKQFHELLKW- 292 (343)
T ss_pred hhCcEEEeCCCCCcccCC--CCceEEEeCCCCcccCCc-----------------cccccCCCeEeCCCHHHHHHHHCC-
Confidence 999999999999999997 479999999999877542 223599999999999999999999
Q ss_pred CCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHH
Q 006585 466 SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKK 515 (639)
Q Consensus 466 ~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~ 515 (639)
+|++||||||||++||+.+||.+||||++|+||||+|+++|.+..+++++
T Consensus 293 ~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 293 RGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred CCCcEEEECCcchHHHHhhHHhcCcEEEEEchhHHHHHHHHhhchhhhhc
Confidence 79999999999999999999999999999999999999999877776654
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-106 Score=852.25 Aligned_cols=416 Identities=49% Similarity=0.772 Sum_probs=377.5
Q ss_pred CCCCCCceEEeCcccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCC
Q 006585 139 KIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKR 218 (639)
Q Consensus 139 ~~~~~~~VF~NR~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ell~~~yDp~F~iRGLv~D~~~ 218 (639)
.++++++|||||+|+|++|.+|||||||||++|+.+++|.|||+ ++.++++..|||.+++.+.|||+|++|||++|.++
T Consensus 9 ~r~~~~~if~~rsl~l~~i~~~GfdmDyTL~~Y~~~~~esLay~-~~~~~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~ 87 (424)
T KOG2469|consen 9 GRDVPHRIFCNRSLNLENIGIVGFDMDYTLARYNLPEMESLAYD-LAQFLLKDKGYPNELLSTSFDWNFPCRGLVLDKER 87 (424)
T ss_pred ccccchheehhhhhhhhcCcEEeeccccchhhhcccchHHHHHH-HHHHHHHhcCChhhhhccccCccceeeeeEEeccC
Confidence 57788889999999999999999999999999999999999999 66666678999999999999999999999999999
Q ss_pred CcEEeecCCCcEEEEeccCccCCHHHHHHHhCCccccccCCCCCeeeeccccchhHHHHHHHHHHHHhcCCCCCCCCCCh
Q 006585 219 GNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMDNNPGKDSKSTDY 298 (639)
Q Consensus 219 GnlLKlD~~g~I~~a~HG~~~Ls~eEi~~~Yg~~~i~~~~~~~~~~~ldTlFslpEa~L~A~lVD~~d~~~~~~~~~~~y 298 (639)
||+||+|++|+|++|+||+++++.+||.++||++.++... +++.+++|+|++||++++||+||++|+++...+.-++|
T Consensus 88 GN~lKld~~~~vl~a~hg~rfls~~~~~eiyg~~~~~~~~--~~~~~l~t~F~~~ea~~~aq~vd~~d~~~~~~~~~~dy 165 (424)
T KOG2469|consen 88 GNLLKLDRFGYVLRAAHGTRFLSNEEISEIYGRKLVRLSD--SRYYLLNTLFSMPEADLFAQAVDFLDNGPEYGPVDMDY 165 (424)
T ss_pred CceeeeeccCceeeeccccccccccchhhhcccccccccC--chhhhhhhhhhchhHHHHHhhcchhhcCCccCccchhh
Confidence 9999999999999999999999999999999999987543 89999999999999999999999999999876666789
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCC
Q 006585 299 VRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGI 378 (639)
Q Consensus 299 ~~l~~DVr~Avd~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~ 378 (639)
+.+|+||++|++++|.+|.+|++++++|||||++++.++.||.++|++|||+||+|||+|+|||.+|++++|
T Consensus 166 k~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~-------- 237 (424)
T KOG2469|consen 166 KPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYG-------- 237 (424)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHhC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCccEEEEccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHH
Q 006585 379 TCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHL 458 (639)
Q Consensus 379 ~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L 458 (639)
.||+.|||+|||.|+||+||+++ +++++|++++|++++++++ |++ ++|++|+||+++.+
T Consensus 238 ---~dW~~yfd~v~~~a~Kp~ff~e~--~vlreV~t~~g~l~~g~~~------~p~----------e~~~~ySggs~~~~ 296 (424)
T KOG2469|consen 238 ---FDWETYFDLVETRAAKPGFFHEG--TVLREVEPQEGLLKNGDNT------GPL----------EQGGVYSGGSLKTV 296 (424)
T ss_pred ---CCcceeEEEEEEeccCCcccccc--ceeeeeccccccccccccC------Ccc----------hhcccCCcchHHHH
Confidence 89999999999999999999996 8999999999999998754 444 89999999999999
Q ss_pred HHHhcccCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 006585 459 HKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLK 538 (639)
Q Consensus 459 ~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~ 538 (639)
+++++. +|++|||+|||||+||+.|||++||||++|||||+.|..+|..+++...++.++. ..++|.+++++.+..
T Consensus 297 ~~~l~~-~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~el~~~~---~~laDiy~~l~~s~~ 372 (424)
T KOG2469|consen 297 ETSMKV-KGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLDSKEEFIELLNWS---SKLADIYPNLDLSLL 372 (424)
T ss_pred HHHhcc-cccceeecccceeeeEEecceecceEEEEEehhhhhhhhhhccchHHHHHHhccc---hhhHhhccCCchhhh
Confidence 999998 7999999999999999999999999999999999999999999886666666665 457888888887653
Q ss_pred cCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccchhhhhhhcccccccc
Q 006585 539 SEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTS 609 (639)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~~~Fn~~~GSlFRtG~~~S~FA~Qv~RyADLYtS 609 (639)
+... +... .+.+++.+.+| +++|..|||+||||+|.|+||.|++||||+|||
T Consensus 373 s~~~-----------~~~~---~r~~~~~~~~~-----dk~~~~~~sl~~s~~~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 373 SAPK-----------DLSI---KRDIQKLTECM-----DKFYGVWGSLFRTGYQRTRFALQVERYADLYTS 424 (424)
T ss_pred hccc-----------ccch---hHHHHHHHHhH-----HHHhcchHHhhccccccchHHHHHHHHHHHhcC
Confidence 1111 1111 12222333333 467899999999999999999999999999997
No 5
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.64 E-value=3.5e-07 Score=92.72 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=73.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCc-cEEEEccCCCCCCCCCCCCc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYF-DVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyF-DvVIv~A~KP~FF~e~~~~p 408 (639)
+..-|.+..+|+.|+++|.++.++||+.-..++.++..+ | +.+|| |.||+...-+. ..|
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~-g-------------l~~~f~d~ii~~~~~~~------~KP 157 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA-A-------------LQGYRPDYNVTTDDVPA------GRP 157 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH-H-------------hcCCCCceEEccccCCC------CCC
Confidence 455689999999999999999999999999999988776 2 45665 88876432100 001
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
...+| ....+.++.....+++||||+. .||..++ ..
T Consensus 158 -------------------------------------~p~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~-~a 193 (253)
T TIGR01422 158 -------------------------------------APWMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGR-NA 193 (253)
T ss_pred -------------------------------------CHHHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHH-HC
Confidence 01122 2344455652257899999998 9987776 55
Q ss_pred CeeEEEeec
Q 006585 489 GWRTMLVVP 497 (639)
Q Consensus 489 gWRT~aIVp 497 (639)
|++|++|..
T Consensus 194 Gi~~i~v~~ 202 (253)
T TIGR01422 194 GMWTVGLIL 202 (253)
T ss_pred CCeEEEEec
Confidence 999999963
No 6
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.61 E-value=1.3e-06 Score=86.05 Aligned_cols=103 Identities=27% Similarity=0.283 Sum_probs=75.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.|+++|.++.++||+.-.++..++..+ +|.+|||.|++...-. .
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~--------------gl~~~f~~i~~~~~~~----~------ 136 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT--------------GLDEFFDVVITLDDVE----H------ 136 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhceeEEEecCcCC----C------
Confidence 345688999999999999999999999988888888765 4789999988632100 0
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
++ .+... ...+.+.++. ...+++||||+. .||..++. .|
T Consensus 137 -------~K--------------------------p~p~~-----~~~~~~~~~~-~~~~~~~iGDs~-~Di~aa~~-aG 175 (214)
T PRK13288 137 -------AK--------------------------PDPEP-----VLKALELLGA-KPEEALMVGDNH-HDILAGKN-AG 175 (214)
T ss_pred -------CC--------------------------CCcHH-----HHHHHHHcCC-CHHHEEEECCCH-HHHHHHHH-CC
Confidence 00 01112 2345566676 578999999997 89877764 59
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
+++++|-.
T Consensus 176 ~~~i~v~~ 183 (214)
T PRK13288 176 TKTAGVAW 183 (214)
T ss_pred CeEEEEcC
Confidence 99999854
No 7
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.58 E-value=1.3e-06 Score=90.45 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=76.2
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
..-|.+..+|+.|+++|.++.++||+...++..++.++ .|.+|||.||+...-. . ..|
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~ii~~~d~~----~--~KP-- 166 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV--------------GMEGFFSVVLAAEDVY----R--GKP-- 166 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc--------------CCHhhCcEEEecccCC----C--CCC--
Confidence 44689999999999999999999999999999998876 4889999999863200 0 001
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
...+| ....+.++. ...+++||||.. .||..++ ..||
T Consensus 167 -----------------------------------~Pe~~-----~~a~~~l~~-~p~~~l~IgDs~-~Di~aA~-~aG~ 203 (260)
T PLN03243 167 -----------------------------------DPEMF-----MYAAERLGF-IPERCIVFGNSN-SSVEAAH-DGCM 203 (260)
T ss_pred -----------------------------------CHHHH-----HHHHHHhCC-ChHHeEEEcCCH-HHHHHHH-HcCC
Confidence 01122 345566787 678999999995 6876665 5699
Q ss_pred eEEEee
Q 006585 491 RTMLVV 496 (639)
Q Consensus 491 RT~aIV 496 (639)
+|++|-
T Consensus 204 ~~i~v~ 209 (260)
T PLN03243 204 KCVAVA 209 (260)
T ss_pred EEEEEe
Confidence 999885
No 8
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.47 E-value=2.5e-06 Score=84.21 Aligned_cols=107 Identities=18% Similarity=0.081 Sum_probs=75.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
..-|.+..+|..|+++|.++.++||+.-.++..++..+ | -.+.+|||.|++...-. . ..|
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~-----------l~~~~~f~~i~~~~~~~---~---~KP-- 146 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-G-----------WTVGDDVDAVVCPSDVA---A---GRP-- 146 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-h-----------hhhhccCCEEEcCCcCC---C---CCC--
Confidence 45688999999999999999999999999999999865 3 12239999999864311 0 001
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
...+ .....+.++.....+++||||.. .||..++ ..||
T Consensus 147 -----------------------------------~p~~-----~~~a~~~~~~~~~~~~~~igD~~-~Di~aa~-~aG~ 184 (220)
T TIGR03351 147 -----------------------------------APDL-----ILRAMELTGVQDVQSVAVAGDTP-NDLEAGI-NAGA 184 (220)
T ss_pred -----------------------------------CHHH-----HHHHHHHcCCCChhHeEEeCCCH-HHHHHHH-HCCC
Confidence 0011 12244455652147999999997 7977666 5699
Q ss_pred eE-EEeeccc
Q 006585 491 RT-MLVVPEL 499 (639)
Q Consensus 491 RT-~aIVpEL 499 (639)
+| ++|...-
T Consensus 185 ~~~i~~~~g~ 194 (220)
T TIGR03351 185 GAVVGVLTGA 194 (220)
T ss_pred CeEEEEecCC
Confidence 99 7876543
No 9
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.47 E-value=1.6e-06 Score=88.91 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=72.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccC-ccEEEEccCCCCCCCCCCCCc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLY-FDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdy-FDvVIv~A~KP~FF~e~~~~p 408 (639)
+..-|.+..+|+.|+++|.++.++||+.-..++.++..+ | +.++ ||.||+...-+ ...|
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~-~-------------l~~~~~d~i~~~~~~~------~~KP 159 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA-A-------------AQGYRPDHVVTTDDVP------AGRP 159 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH-h-------------hcCCCceEEEcCCcCC------CCCC
Confidence 455689999999999999999999999999988888765 1 2344 47776543200 0000
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
...+| ....+-++.....+++||||.. .||..++. .
T Consensus 160 -------------------------------------~p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~-a 195 (267)
T PRK13478 160 -------------------------------------YPWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGLN-A 195 (267)
T ss_pred -------------------------------------ChHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHHH-C
Confidence 01122 3344556652247899999998 89877765 6
Q ss_pred CeeEEEeecc
Q 006585 489 GWRTMLVVPE 498 (639)
Q Consensus 489 gWRT~aIVpE 498 (639)
|++|++|..-
T Consensus 196 G~~~i~v~~g 205 (267)
T PRK13478 196 GMWTVGVILS 205 (267)
T ss_pred CCEEEEEccC
Confidence 9999999753
No 10
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.40 E-value=1.3e-05 Score=79.71 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=77.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
...-|.+..+|+.|++.|.++.++||+.-..+..+++++ .+.++||.|++... ... ..|
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~----~~~--~Kp- 149 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF--------------DLRDYFDALASAEK----LPY--SKP- 149 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC--------------cchhcccEEEEccc----CCC--CCC-
Confidence 344589999999999999999999999999999888874 36889998886631 110 001
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
+..+ ...+.+.+|. ...+++||||+. .||..++ ..|
T Consensus 150 ------------------------------------~~~~-----~~~~~~~~~~-~~~~~~~igDs~-~Di~aA~-~aG 185 (222)
T PRK10826 150 ------------------------------------HPEV-----YLNCAAKLGV-DPLTCVALEDSF-NGMIAAK-AAR 185 (222)
T ss_pred ------------------------------------CHHH-----HHHHHHHcCC-CHHHeEEEcCCh-hhHHHHH-HcC
Confidence 0112 2456667787 578999999998 7977666 569
Q ss_pred eeEEEeecc
Q 006585 490 WRTMLVVPE 498 (639)
Q Consensus 490 WRT~aIVpE 498 (639)
++|++|-..
T Consensus 186 ~~~i~v~~~ 194 (222)
T PRK10826 186 MRSIVVPAP 194 (222)
T ss_pred CEEEEecCC
Confidence 999998754
No 11
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.39 E-value=1.6e-05 Score=78.16 Aligned_cols=103 Identities=22% Similarity=0.269 Sum_probs=73.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
...-|.+..+|+.|+++|.++.++||+.-.+...++..+ .|.++||.|++...-. .
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~------ 147 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL--------------GIADYFSVVIGGDSLP----N------ 147 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCccCccEEEcCCCCC----C------
Confidence 445689999999999999999999999998888877765 3567899876532100 0
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
+ + .+.. ....+.+.++. ...+++||||.. .||-.++. .|
T Consensus 148 -------~--k------------------------p~~~-----~~~~~~~~~~~-~~~~~i~igD~~-~Di~~a~~-~g 186 (226)
T PRK13222 148 -------K--K------------------------PDPA-----PLLLACEKLGL-DPEEMLFVGDSR-NDIQAARA-AG 186 (226)
T ss_pred -------C--C------------------------cChH-----HHHHHHHHcCC-ChhheEEECCCH-HHHHHHHH-CC
Confidence 0 0 0011 23345555666 578999999995 89877775 59
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
|.|++|..
T Consensus 187 ~~~i~v~~ 194 (226)
T PRK13222 187 CPSVGVTY 194 (226)
T ss_pred CcEEEECc
Confidence 99999863
No 12
>PLN02940 riboflavin kinase
Probab=98.36 E-value=7.6e-06 Score=89.16 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=75.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.|+++|.++.++||+.-.+++..+.-. ..|.+|||.|++...-. . ..|
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~-------------~gl~~~Fd~ii~~d~v~--~----~KP- 151 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCH-------------QGWKESFSVIVGGDEVE--K----GKP- 151 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhc-------------cChHhhCCEEEehhhcC--C----CCC-
Confidence 344589999999999999999999999998888776533 24899999998854210 0 001
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
...+ .....+.++. ...++++|||.. .||..++ ..|
T Consensus 152 ------------------------------------~p~~-----~~~a~~~lgv-~p~~~l~VGDs~-~Di~aA~-~aG 187 (382)
T PLN02940 152 ------------------------------------SPDI-----FLEAAKRLNV-EPSNCLVIEDSL-PGVMAGK-AAG 187 (382)
T ss_pred ------------------------------------CHHH-----HHHHHHHcCC-ChhHEEEEeCCH-HHHHHHH-HcC
Confidence 0111 2335555676 678999999997 5977666 569
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
+++++|--
T Consensus 188 i~~I~v~~ 195 (382)
T PLN02940 188 MEVIAVPS 195 (382)
T ss_pred CEEEEECC
Confidence 99999853
No 13
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.32 E-value=1.5e-06 Score=85.61 Aligned_cols=107 Identities=24% Similarity=0.259 Sum_probs=80.0
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCC
Q 006585 328 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRA 407 (639)
Q Consensus 328 KYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~ 407 (639)
.++...|.+..+|+.||++|.++.++||+.-.++...+..+ +|.+|||.|++..... ...
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~------~~K 150 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL--------------GVRDFFDAVITSEEEG------VEK 150 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC--------------ChHHhccEEEEeccCC------CCC
Confidence 35667899999999999999999999999988887776654 4789999988753211 000
Q ss_pred cceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccc
Q 006585 408 NLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 487 (639)
Q Consensus 408 p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~ 487 (639)
| ...+ .....+.+|. ...+++||||+...||..+++.
T Consensus 151 P-------------------------------------~~~~-----~~~~~~~~~~-~~~~~~~igDs~~~di~~A~~a 187 (221)
T TIGR02253 151 P-------------------------------------HPKI-----FYAALKRLGV-KPEEAVMVGDRLDKDIKGAKNL 187 (221)
T ss_pred C-------------------------------------CHHH-----HHHHHHHcCC-ChhhEEEECCChHHHHHHHHHC
Confidence 0 0112 3445566777 5789999999999998887755
Q ss_pred cCeeEEEeecc
Q 006585 488 LGWRTMLVVPE 498 (639)
Q Consensus 488 ~gWRT~aIVpE 498 (639)
||+|++|-.-
T Consensus 188 -G~~~i~~~~~ 197 (221)
T TIGR02253 188 -GMKTVWINQG 197 (221)
T ss_pred -CCEEEEECCC
Confidence 9999998643
No 14
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.31 E-value=1.1e-05 Score=77.59 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=66.4
Q ss_pred hHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEeeCC
Q 006585 336 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPE 415 (639)
Q Consensus 336 L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~~~ 415 (639)
...+|..|++. .++.++||+.-.++...+..+ .|.+|||.|++...-. . ..|
T Consensus 92 ~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~---~---~KP------- 143 (188)
T PRK10725 92 LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHL--------------GLRRYFDAVVAADDVQ---H---HKP------- 143 (188)
T ss_pred HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC--------------CcHhHceEEEehhhcc---C---CCC-------
Confidence 35788888865 799999999999999888875 4789999988853210 0 001
Q ss_pred CCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCeeEEEe
Q 006585 416 SGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 495 (639)
Q Consensus 416 tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 495 (639)
...+ .....+.++. ...+++||||. ..||..++ ..||+|++|
T Consensus 144 ------------------------------~p~~-----~~~~~~~~~~-~~~~~l~igDs-~~di~aA~-~aG~~~i~~ 185 (188)
T PRK10725 144 ------------------------------APDT-----FLRCAQLMGV-QPTQCVVFEDA-DFGIQAAR-AAGMDAVDV 185 (188)
T ss_pred ------------------------------ChHH-----HHHHHHHcCC-CHHHeEEEecc-HhhHHHHH-HCCCEEEee
Confidence 0001 1224445565 46899999998 78876665 569999987
Q ss_pred e
Q 006585 496 V 496 (639)
Q Consensus 496 V 496 (639)
-
T Consensus 186 ~ 186 (188)
T PRK10725 186 R 186 (188)
T ss_pred c
Confidence 3
No 15
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.12 E-value=3.1e-05 Score=76.26 Aligned_cols=107 Identities=22% Similarity=0.280 Sum_probs=78.2
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCc
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p 408 (639)
.+..-|.+...|+++++. .++.++||+.-........-+ . ..++||.|++....- +. .|
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------------g-l~~~Fd~v~~s~~~g--~~----KP 155 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------------G-LLDYFDAVFISEDVG--VA----KP 155 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------------C-ChhhhheEEEecccc--cC----CC
Confidence 345568888999999888 899999999777777777765 1 478999998765422 00 01
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
...+| ..+.+.+|. ...++++|||++..||.-++ ..
T Consensus 156 -------------------------------------~~~~f-----~~~~~~~g~-~p~~~l~VgD~~~~di~gA~-~~ 191 (229)
T COG1011 156 -------------------------------------DPEIF-----EYALEKLGV-PPEEALFVGDSLENDILGAR-AL 191 (229)
T ss_pred -------------------------------------CcHHH-----HHHHHHcCC-CcceEEEECCChhhhhHHHH-hc
Confidence 11233 346677777 57899999999999987776 56
Q ss_pred CeeEEEeecccH
Q 006585 489 GWRTMLVVPELE 500 (639)
Q Consensus 489 gWRT~aIVpELe 500 (639)
||+|+.|.++-.
T Consensus 192 G~~~vwi~~~~~ 203 (229)
T COG1011 192 GMKTVWINRGGK 203 (229)
T ss_pred CcEEEEECCCCC
Confidence 999999887654
No 16
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.08 E-value=7.8e-06 Score=75.51 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=80.7
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCC
Q 006585 327 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNR 406 (639)
Q Consensus 327 eKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~ 406 (639)
...+...|.+..+|++|+++|.++.++||++-.++...++.+ .|.++||.|++....+. .
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~--------------~~~~~f~~i~~~~~~~~------~ 132 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL--------------GLDDYFDEIISSDDVGS------R 132 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT--------------THGGGCSEEEEGGGSSS------S
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc--------------ccccccccccccchhhh------h
Confidence 367788999999999999999999999999998888888876 35689999988753211 0
Q ss_pred CcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccc
Q 006585 407 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 486 (639)
Q Consensus 407 ~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk 486 (639)
.| ...+ ...+.+-+++ ...++++|||+. .||..++
T Consensus 133 Kp-------------------------------------~~~~-----~~~~~~~~~~-~p~~~~~vgD~~-~d~~~A~- 167 (176)
T PF13419_consen 133 KP-------------------------------------DPDA-----YRRALEKLGI-PPEEILFVGDSP-SDVEAAK- 167 (176)
T ss_dssp TT-------------------------------------SHHH-----HHHHHHHHTS-SGGGEEEEESSH-HHHHHHH-
T ss_pred hh-------------------------------------HHHH-----HHHHHHHcCC-CcceEEEEeCCH-HHHHHHH-
Confidence 00 0112 3456666787 689999999999 9987776
Q ss_pred ccCeeEEEe
Q 006585 487 VLGWRTMLV 495 (639)
Q Consensus 487 ~~gWRT~aI 495 (639)
..||+|+.|
T Consensus 168 ~~G~~~i~v 176 (176)
T PF13419_consen 168 EAGIKTIWV 176 (176)
T ss_dssp HTTSEEEEE
T ss_pred HcCCeEEeC
Confidence 669999986
No 17
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.06 E-value=2.3e-05 Score=74.12 Aligned_cols=100 Identities=29% Similarity=0.325 Sum_probs=70.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+...|.+..+|+.|++.|.++.++||+.... ...... +| +.++||.||+... .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~~-------------l~~~f~~i~~~~~------~------ 136 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-LG-------------LRDLFDVVIFSGD------V------ 136 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-cC-------------CHHHCCEEEEcCC------C------
Confidence 5677999999999999999999999999888 443332 23 4679999987521 0
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
|.-+ ....+ +..+.+.++. ...+++||||+. .||..++ ..|
T Consensus 137 -------~~~K------------------------P~~~~-----~~~~~~~~~~-~~~~~~~vgD~~-~di~aA~-~~G 177 (183)
T TIGR01509 137 -------GRGK------------------------PDPDI-----YLLALKKLGL-KPEECLFVDDSP-AGIEAAK-AAG 177 (183)
T ss_pred -------CCCC------------------------CCHHH-----HHHHHHHcCC-CcceEEEEcCCH-HHHHHHH-HcC
Confidence 0000 00112 2345666777 579999999998 4876665 679
Q ss_pred eeEEEe
Q 006585 490 WRTMLV 495 (639)
Q Consensus 490 WRT~aI 495 (639)
|+|++|
T Consensus 178 ~~~i~v 183 (183)
T TIGR01509 178 MHTVLV 183 (183)
T ss_pred CEEEeC
Confidence 999976
No 18
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.04 E-value=7.6e-05 Score=73.86 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=68.7
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCcc-EEEEcc----CCCCCCC
Q 006585 328 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFD-VVITGS----AKPGFFH 402 (639)
Q Consensus 328 KYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFD-vVIv~A----~KP~FF~ 402 (639)
..+...|.+..+|+.| |.++.++||+.-.++...+... +..++|| +|++.. .||
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~--------------~l~~~F~~~v~~~~~~~~~KP---- 143 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT--------------GMLHYFPDKLFSGYDIQRWKP---- 143 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc--------------ChHHhCcceEeeHHhcCCCCC----
Confidence 3456678999999999 3799999999988888877654 4578895 555432 122
Q ss_pred CCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccc
Q 006585 403 EDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDIL 482 (639)
Q Consensus 403 e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl 482 (639)
+..+ .....+.++. ...+++||||+. .||.
T Consensus 144 -------------------------------------------~p~~-----~~~a~~~~~~-~p~~~l~igDs~-~di~ 173 (221)
T PRK10563 144 -------------------------------------------DPAL-----MFHAAEAMNV-NVENCILVDDSS-AGAQ 173 (221)
T ss_pred -------------------------------------------ChHH-----HHHHHHHcCC-CHHHeEEEeCcH-hhHH
Confidence 0111 2234555676 578999999998 6887
Q ss_pred ccccccCeeEEEee
Q 006585 483 RSKKVLGWRTMLVV 496 (639)
Q Consensus 483 ~sKk~~gWRT~aIV 496 (639)
.++ ..|++|+++.
T Consensus 174 aA~-~aG~~~i~~~ 186 (221)
T PRK10563 174 SGI-AAGMEVFYFC 186 (221)
T ss_pred HHH-HCCCEEEEEC
Confidence 666 6699999885
No 19
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.04 E-value=1.1e-05 Score=78.48 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=76.7
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
..-|.+..+|++||++|.++.++||+...+....+..+ .+.++||.|++...-
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------gl~~~fd~i~~s~~~------------- 144 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA--------------GLDDPFDAVLSADAV------------- 144 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC--------------CChhhhheeEehhhc-------------
Confidence 34689999999999999999999999999988888754 367899998875210
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
|..+ ....+ ...+.+.++. ...++++|||+. .||..++ ..||
T Consensus 145 ------~~~K------------------------P~~~~-----~~~~~~~~~~-~p~~~~~vgD~~-~Di~~A~-~~G~ 186 (198)
T TIGR01428 145 ------RAYK------------------------PAPQV-----YQLALEALGV-PPDEVLFVASNP-WDLGGAK-KFGF 186 (198)
T ss_pred ------CCCC------------------------CCHHH-----HHHHHHHhCC-ChhhEEEEeCCH-HHHHHHH-HCCC
Confidence 0000 00112 2345666776 578999999999 8988775 5699
Q ss_pred eEEEeecc
Q 006585 491 RTMLVVPE 498 (639)
Q Consensus 491 RT~aIVpE 498 (639)
+|+.|-+.
T Consensus 187 ~~i~v~r~ 194 (198)
T TIGR01428 187 KTAWVNRP 194 (198)
T ss_pred cEEEecCC
Confidence 99998764
No 20
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.91 E-value=3.9e-05 Score=77.13 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=75.8
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCc
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p 408 (639)
++..-|.+..+|+.||++|.++.++||+.-.++..++..+ +|.++||+|++.-..+. ..|
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~~------~KP 152 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL--------------GWEQRCAVLIGGDTLAE------RKP 152 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------------CchhcccEEEecCcCCC------CCC
Confidence 4556799999999999999999999999988887776653 47889998876532110 001
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
...+ ...+.+.+|. ...+++||||+. .||..++ ..
T Consensus 153 -------------------------------------~p~~-----~~~~~~~l~~-~p~~~l~IGDs~-~Di~aA~-~a 187 (229)
T PRK13226 153 -------------------------------------HPLP-----LLVAAERIGV-APTDCVYVGDDE-RDILAAR-AA 187 (229)
T ss_pred -------------------------------------CHHH-----HHHHHHHhCC-ChhhEEEeCCCH-HHHHHHH-HC
Confidence 0011 2346667787 689999999995 8977765 56
Q ss_pred CeeEEEee
Q 006585 489 GWRTMLVV 496 (639)
Q Consensus 489 gWRT~aIV 496 (639)
||+|++|.
T Consensus 188 G~~~i~v~ 195 (229)
T PRK13226 188 GMPSVAAL 195 (229)
T ss_pred CCcEEEEe
Confidence 99999984
No 21
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.89 E-value=5.6e-05 Score=77.83 Aligned_cols=101 Identities=30% Similarity=0.463 Sum_probs=68.3
Q ss_pred cccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccC----CCCCC
Q 006585 326 PKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFF 401 (639)
Q Consensus 326 peKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~----KP~FF 401 (639)
|+-|..-++.. .+|++||+.| +.|.|||.+|.--....=.+| =..|||.||+++. ||
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g--~~l~iisN~d~r~~~~l~~~~-------------l~~~fD~vv~S~e~g~~KP--- 169 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKG--TILGIISNFDDRLRLLLLPLG-------------LSAYFDFVVESCEVGLEKP--- 169 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCC--eEEEEecCCcHHHHHHhhccC-------------HHHhhhhhhhhhhhccCCC---
Confidence 44444555545 9999999999 555566666554443333333 1389999998653 33
Q ss_pred CCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccc
Q 006585 402 HEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDI 481 (639)
Q Consensus 402 ~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDI 481 (639)
+ .+||+ ..++.++. ...+|+++||..-.|+
T Consensus 170 -D-------------------------------------------p~If~-----~al~~l~v-~Pee~vhIgD~l~nD~ 199 (237)
T KOG3085|consen 170 -D-------------------------------------------PRIFQ-----LALERLGV-KPEECVHIGDLLENDY 199 (237)
T ss_pred -C-------------------------------------------hHHHH-----HHHHHhCC-ChHHeEEecCcccccc
Confidence 1 12342 25566776 5789999999999997
Q ss_pred cccccccCeeEEEee
Q 006585 482 LRSKKVLGWRTMLVV 496 (639)
Q Consensus 482 l~sKk~~gWRT~aIV 496 (639)
..++ ..||+|.+|.
T Consensus 200 ~gA~-~~G~~ailv~ 213 (237)
T KOG3085|consen 200 EGAR-NLGWHAILVD 213 (237)
T ss_pred HhHH-HcCCEEEEEc
Confidence 6665 6799999998
No 22
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.84 E-value=2.5e-05 Score=76.57 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=75.7
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCc
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p 408 (639)
.+..-|....+|++|+++|.++.++||+.-.++...+..+ +|.++||.|++...-
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~----------- 127 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL--------------GLLPLFDHVIGSDEV----------- 127 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc--------------CChhheeeEEecCcC-----------
Confidence 4566799999999999999999999999999998888754 578899988763210
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
+..+ .+.. -.....+.++. ...+++||||+. .||..++ ..
T Consensus 128 --------~~~K------------------------P~~~-----~~~~~~~~~~~-~~~~~l~igD~~-~Di~aA~-~~ 167 (205)
T TIGR01454 128 --------PRPK------------------------PAPD-----IVREALRLLDV-PPEDAVMVGDAV-TDLASAR-AA 167 (205)
T ss_pred --------CCCC------------------------CChH-----HHHHHHHHcCC-ChhheEEEcCCH-HHHHHHH-Hc
Confidence 0000 0011 12345556776 678999999997 7987776 45
Q ss_pred CeeEEEee
Q 006585 489 GWRTMLVV 496 (639)
Q Consensus 489 gWRT~aIV 496 (639)
|+++++|.
T Consensus 168 Gi~~i~~~ 175 (205)
T TIGR01454 168 GTATVAAL 175 (205)
T ss_pred CCeEEEEE
Confidence 99999885
No 23
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=3.4e-05 Score=78.62 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=77.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.|++.|.++.++||+.-.++...+..+ +|.+|||.||+...-+. ..|
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~iv~~~~~~~------~KP- 165 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL--------------GLSDFFQAVIIGSECEH------AKP- 165 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc--------------CChhhCcEEEecCcCCC------CCC-
Confidence 455688999999999999999999999999999999875 47899999988764210 011
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
+... .....+.++. ...+++||||.. .||..++ ..|
T Consensus 166 ------------------------------------~p~~-----~~~a~~~~~~-~~~~~l~vgDs~-~Di~aA~-~aG 201 (248)
T PLN02770 166 ------------------------------------HPDP-----YLKALEVLKV-SKDHTFVFEDSV-SGIKAGV-AAG 201 (248)
T ss_pred ------------------------------------ChHH-----HHHHHHHhCC-ChhHEEEEcCCH-HHHHHHH-HCC
Confidence 0001 2234455676 578999999999 8988887 569
Q ss_pred eeEEEee
Q 006585 490 WRTMLVV 496 (639)
Q Consensus 490 WRT~aIV 496 (639)
++|++|-
T Consensus 202 i~~i~v~ 208 (248)
T PLN02770 202 MPVVGLT 208 (248)
T ss_pred CEEEEEe
Confidence 9999985
No 24
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.82 E-value=0.00025 Score=69.31 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=39.7
Q ss_pred hHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 006585 336 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 395 (639)
Q Consensus 336 L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A 395 (639)
...+|+.|++.|.++.++||+.-.++..+++.+ .|..|||.|++..
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~--------------gl~~~f~~~~~~~ 156 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH--------------GLEILFPVQIWME 156 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc--------------CchhhCCEEEeec
Confidence 378999999999999999999999999988765 4678999888743
No 25
>PRK09449 dUMP phosphatase; Provisional
Probab=97.80 E-value=3.9e-05 Score=75.95 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=73.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccC----CCCCCCCCC
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHEDN 405 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~----KP~FF~e~~ 405 (639)
+..-|.+..+|+.|+ +|.++.++||+..+.+...+..+ .+.+|||.|++... ||
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~v~~~~~~~~~KP------- 151 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT--------------GLRDYFDLLVISEQVGVAKP------- 151 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC--------------ChHHHcCEEEEECccCCCCC-------
Confidence 345689999999999 57999999999999888887764 46789999987632 22
Q ss_pred CCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccc
Q 006585 406 RANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 485 (639)
Q Consensus 406 ~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sK 485 (639)
...+ ...+.+.+|.....+++||||+...||..++
T Consensus 152 ----------------------------------------~p~~-----~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~ 186 (224)
T PRK09449 152 ----------------------------------------DVAI-----FDYALEQMGNPDRSRVLMVGDNLHSDILGGI 186 (224)
T ss_pred ----------------------------------------CHHH-----HHHHHHHcCCCCcccEEEEcCCcHHHHHHHH
Confidence 0011 1234445564223689999999999988665
Q ss_pred cccCeeEEEeec
Q 006585 486 KVLGWRTMLVVP 497 (639)
Q Consensus 486 k~~gWRT~aIVp 497 (639)
..||+|++|.+
T Consensus 187 -~aG~~~i~~~~ 197 (224)
T PRK09449 187 -NAGIDTCWLNA 197 (224)
T ss_pred -HCCCcEEEECC
Confidence 56999999864
No 26
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.78 E-value=3e-05 Score=76.00 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=71.4
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceE
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 411 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~ 411 (639)
..|.+..+|+.||++|.++.++||++-..+....... ..|.++||.|++...=
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~-------------~~l~~~fd~v~~s~~~-------------- 137 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY-------------PEVRAAADHIYLSQDL-------------- 137 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc-------------hhHHHhcCEEEEeccc--------------
Confidence 4688999999999999999999999876554433322 3578899998876420
Q ss_pred eeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCee
Q 006585 412 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 491 (639)
Q Consensus 412 V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWR 491 (639)
|..| ....+| ....+.+|. ...+++||||+.. ||..++ ..||+
T Consensus 138 -----~~~K------------------------P~p~~~-----~~~~~~~~~-~p~~~l~vgD~~~-di~aA~-~aG~~ 180 (199)
T PRK09456 138 -----GMRK------------------------PEARIY-----QHVLQAEGF-SAADAVFFDDNAD-NIEAAN-ALGIT 180 (199)
T ss_pred -----CCCC------------------------CCHHHH-----HHHHHHcCC-ChhHeEEeCCCHH-HHHHHH-HcCCE
Confidence 0000 112233 345566776 6799999999975 765555 57999
Q ss_pred EEEeec
Q 006585 492 TMLVVP 497 (639)
Q Consensus 492 T~aIVp 497 (639)
|+.|-.
T Consensus 181 ~i~~~~ 186 (199)
T PRK09456 181 SILVTD 186 (199)
T ss_pred EEEecC
Confidence 998754
No 27
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.78 E-value=0.00039 Score=84.99 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=75.7
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCC-ccCccEEEEccCCCCCCCCCCCCcce
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW-LLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dW-rdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
.-|.+..+|+.||++|.++.++||+...+++.++..+ .| .+|||.|++.-.- ..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~--------------gl~~~~Fd~iv~~~~~----~~------- 216 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA--------------GLPLSMFDAIVSADAF----EN------- 216 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc--------------CCChhHCCEEEECccc----cc-------
Confidence 3589999999999999999999999999999988765 34 4789998864310 00
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
+ + ....+| ....+.++. ...+++||||.. .||..++ ..||
T Consensus 217 ------~--K------------------------P~Pe~~-----~~a~~~lgv-~p~e~v~IgDs~-~Di~AA~-~aGm 256 (1057)
T PLN02919 217 ------L--K------------------------PAPDIF-----LAAAKILGV-PTSECVVIEDAL-AGVQAAR-AAGM 256 (1057)
T ss_pred ------C--C------------------------CCHHHH-----HHHHHHcCc-CcccEEEEcCCH-HHHHHHH-HcCC
Confidence 0 0 011133 234556677 678999999997 5866665 6699
Q ss_pred eEEEeeccc
Q 006585 491 RTMLVVPEL 499 (639)
Q Consensus 491 RT~aIVpEL 499 (639)
+|++|....
T Consensus 257 ~~I~v~~~~ 265 (1057)
T PLN02919 257 RCIAVTTTL 265 (1057)
T ss_pred EEEEECCCC
Confidence 999998764
No 28
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.77 E-value=5.3e-05 Score=74.04 Aligned_cols=105 Identities=24% Similarity=0.298 Sum_probs=77.2
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCC
Q 006585 327 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNR 406 (639)
Q Consensus 327 eKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~ 406 (639)
.+.+...|.+..+|+.|+++|.++.++||+.-.++..++..+ +|.++||.|++..... . .
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~--~ 140 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL--------------GLAKYFSVLIGGDSLA----Q--R 140 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CcHhhCcEEEecCCCC----C--C
Confidence 345566799999999999999999999999999999988865 4788999886532100 0 0
Q ss_pred CcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccc
Q 006585 407 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 486 (639)
Q Consensus 407 ~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk 486 (639)
.| ... ....+.+.++. ...+++||||+ ..|+..+++
T Consensus 141 Kp-------------------------------------~p~-----~~~~~~~~~~~-~~~~~~~igDs-~~d~~aa~~ 176 (213)
T TIGR01449 141 KP-------------------------------------HPD-----PLLLAAERLGV-APQQMVYVGDS-RVDIQAARA 176 (213)
T ss_pred CC-------------------------------------ChH-----HHHHHHHHcCC-ChhHeEEeCCC-HHHHHHHHH
Confidence 00 011 12345566676 57889999999 589877765
Q ss_pred ccCeeEEEee
Q 006585 487 VLGWRTMLVV 496 (639)
Q Consensus 487 ~~gWRT~aIV 496 (639)
.|+.+++|.
T Consensus 177 -aG~~~i~v~ 185 (213)
T TIGR01449 177 -AGCPSVLLT 185 (213)
T ss_pred -CCCeEEEEc
Confidence 699999884
No 29
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.71 E-value=4.4e-05 Score=74.46 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=68.5
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
...|.+..+|+.||++|.++.++||+.... ...+.. ..|.++||.|++...-
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~--------------~~l~~~fd~i~~s~~~------------- 156 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA--------------LGLLEYFDFVVTSYEV------------- 156 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH--------------CCcHHhcceEEeeccc-------------
Confidence 446889999999999999999999997643 333332 2468899998864320
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
|..+ ....+ .....+.+|. ...+++||||+...||..++ ..||
T Consensus 157 ------~~~K------------------------P~~~~-----~~~~~~~~~~-~~~~~~~IgD~~~~Di~~A~-~aG~ 199 (203)
T TIGR02252 157 ------GAEK------------------------PDPKI-----FQEALERAGI-SPEEALHIGDSLRNDYQGAR-AAGW 199 (203)
T ss_pred ------CCCC------------------------CCHHH-----HHHHHHHcCC-ChhHEEEECCCchHHHHHHH-HcCC
Confidence 0000 00011 2335556676 67899999999999988775 5699
Q ss_pred eEEE
Q 006585 491 RTML 494 (639)
Q Consensus 491 RT~a 494 (639)
+|++
T Consensus 200 ~~i~ 203 (203)
T TIGR02252 200 RALL 203 (203)
T ss_pred eeeC
Confidence 9873
No 30
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.70 E-value=4.7e-05 Score=76.71 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=74.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.||++|.++.++||+...++...+..+ .|.+|||.||+...-. . ..|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~iv~s~~~~----~--~KP- 150 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT--------------GLDAHLDLLLSTHTFG----Y--PKE- 150 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC--------------CcHHHCCEEEEeeeCC----C--CCC-
Confidence 344688999999999999999999999999988887764 4789999988654210 0 011
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
...+ .....+.+|. ...+++||||... ||..+ +..|
T Consensus 151 ------------------------------------~p~~-----~~~~~~~~~~-~p~~~l~igDs~~-di~aA-~~aG 186 (224)
T PRK14988 151 ------------------------------------DQRL-----WQAVAEHTGL-KAERTLFIDDSEP-ILDAA-AQFG 186 (224)
T ss_pred ------------------------------------CHHH-----HHHHHHHcCC-ChHHEEEEcCCHH-HHHHH-HHcC
Confidence 0011 2334566676 5789999999985 76555 5679
Q ss_pred eeEEEeecc
Q 006585 490 WRTMLVVPE 498 (639)
Q Consensus 490 WRT~aIVpE 498 (639)
|+|+..|+-
T Consensus 187 ~~~~~~v~~ 195 (224)
T PRK14988 187 IRYCLGVTN 195 (224)
T ss_pred CeEEEEEeC
Confidence 998665554
No 31
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.70 E-value=0.00015 Score=66.25 Aligned_cols=101 Identities=25% Similarity=0.239 Sum_probs=69.4
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCC--------hhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCC
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSL--------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGF 400 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~--------~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~F 400 (639)
....-|.+..+|+.|+++|.+++++||+. .+++...+..+ | - .|+.+++.. .
T Consensus 23 ~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~-----------l----~~~~~~~~~---~- 82 (132)
T TIGR01662 23 ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-G-----------V----PIDVLYACP---H- 82 (132)
T ss_pred HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-C-----------C----CEEEEEECC---C-
Confidence 34556899999999999999999999999 66677666665 2 1 134444332 0
Q ss_pred CCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHh-cccCCCcEEEEcccccc
Q 006585 401 FHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHIYG 479 (639)
Q Consensus 401 F~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll-~~~~G~~VLYfGDHIyg 479 (639)
. ..| +. +-...+.+.+ +. ...+++||||+...
T Consensus 83 --~--~KP-------------------------------------~~-----~~~~~~~~~~~~~-~~~~~v~IGD~~~~ 115 (132)
T TIGR01662 83 --C--RKP-------------------------------------KP-----GMFLEALKRFNEI-DPEESVYVGDQDLT 115 (132)
T ss_pred --C--CCC-------------------------------------Ch-----HHHHHHHHHcCCC-ChhheEEEcCCCcc
Confidence 0 011 00 1223455666 46 67899999998889
Q ss_pred cccccccccCeeEEEeec
Q 006585 480 DILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 480 DIl~sKk~~gWRT~aIVp 497 (639)
||..++ ..||+|++|-|
T Consensus 116 Di~~A~-~~Gi~~i~~~~ 132 (132)
T TIGR01662 116 DLQAAK-RAGLAFILVAP 132 (132)
T ss_pred cHHHHH-HCCCeEEEeeC
Confidence 988775 56999999865
No 32
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.64 E-value=0.00014 Score=70.80 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=62.3
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh-ccCCCCCCCCCCCCCCccCccEEEEccC-CCCCCCCCCCC
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL-CGSHTLDGGITCNSDWLLYFDVVITGSA-KPGFFHEDNRA 407 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl-~g~~~~~~~~~~~~dWrdyFDvVIv~A~-KP~FF~e~~~~ 407 (639)
+..-|.+..+|++|++.| +++++||..-.........+ +. .-|-++|+.||+... ||.
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~-----------~~f~~~f~~i~~~~~~~~k-------- 132 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLN-----------ALFPGAFSEVLMCGHDESK-------- 132 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHH-----------HhCCCcccEEEEeccCccc--------
Confidence 445688999999999987 46788987765555444333 11 223346766665433 210
Q ss_pred cceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccc
Q 006585 408 NLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 487 (639)
Q Consensus 408 p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~ 487 (639)
| .+ .....+.+| ..+++||||...+ |..++..
T Consensus 133 p---------------------------------------~~-----~~~a~~~~~---~~~~v~vgDs~~d-i~aA~~a 164 (197)
T PHA02597 133 E---------------------------------------KL-----FIKAKEKYG---DRVVCFVDDLAHN-LDAAHEA 164 (197)
T ss_pred H---------------------------------------HH-----HHHHHHHhC---CCcEEEeCCCHHH-HHHHHHH
Confidence 0 00 111223333 3568999999988 7666654
Q ss_pred c-CeeEEEeecc
Q 006585 488 L-GWRTMLVVPE 498 (639)
Q Consensus 488 ~-gWRT~aIVpE 498 (639)
. |+.|+.|-..
T Consensus 165 ~~Gi~~i~~~~~ 176 (197)
T PHA02597 165 LSQLPVIHMLRG 176 (197)
T ss_pred HcCCcEEEecch
Confidence 4 9999999655
No 33
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.63 E-value=0.0023 Score=64.24 Aligned_cols=103 Identities=26% Similarity=0.323 Sum_probs=73.3
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCc
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p 408 (639)
+...-|.++.+|..|+++|.+++++||-+-.++..+.... | +.+|||+|++... ++.. .|
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~-g-------------l~~~F~~i~g~~~---~~~~---KP 146 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL-G-------------LADYFDVIVGGDD---VPPP---KP 146 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh-C-------------CccccceEEcCCC---CCCC---Cc
Confidence 4566799999999999999999999999999999999984 3 5789999998221 1111 11
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
+ | . ....+++.++.. ..+++||||.++ ||..+|..
T Consensus 147 ----~-------------P-------------------~------~l~~~~~~~~~~-~~~~l~VGDs~~-Di~aA~~A- 181 (220)
T COG0546 147 ----D-------------P-------------------E------PLLLLLEKLGLD-PEEALMVGDSLN-DILAAKAA- 181 (220)
T ss_pred ----C-------------H-------------------H------HHHHHHHHhCCC-hhheEEECCCHH-HHHHHHHc-
Confidence 0 0 0 122345556663 459999999985 87777754
Q ss_pred CeeEEEee
Q 006585 489 GWRTMLVV 496 (639)
Q Consensus 489 gWRT~aIV 496 (639)
|-.|++|-
T Consensus 182 g~~~v~v~ 189 (220)
T COG0546 182 GVPAVGVT 189 (220)
T ss_pred CCCEEEEE
Confidence 56666654
No 34
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.62 E-value=0.00013 Score=64.12 Aligned_cols=117 Identities=27% Similarity=0.327 Sum_probs=78.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+...+.+..+|++|+++|.+++++||+...++...+..+ .+..+|+.|++....+.+-... ..+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~-~~~- 86 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL--------------GLDDYFDPVITSNGAAIYYPKE-GLF- 86 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc--------------CCchhhhheeccchhhhhcccc-ccc-
Confidence 455688999999999999999999999988888888764 2457788888776655433221 100
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
. + +.+ ..++ ++. .+....+.+.++. ...+++||||+. +|+...+ ..|
T Consensus 87 ~------~-------~~~-~~~~------------~~~----~~~~~~~~~~~~~-~~~~~~~igD~~-~d~~~~~-~~g 133 (139)
T cd01427 87 L------G-------GGP-FDIG------------KPN----PDKLLAALKLLGV-DPEEVLMVGDSL-NDIEMAK-AAG 133 (139)
T ss_pred c------c-------ccc-cccC------------CCC----HHHHHHHHHHcCC-ChhhEEEeCCCH-HHHHHHH-HcC
Confidence 0 0 000 0001 111 1223455666666 578999999999 9987776 459
Q ss_pred eeEEEe
Q 006585 490 WRTMLV 495 (639)
Q Consensus 490 WRT~aI 495 (639)
|+|++|
T Consensus 134 ~~~i~v 139 (139)
T cd01427 134 GLGVAV 139 (139)
T ss_pred CceeeC
Confidence 999875
No 35
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.58 E-value=0.00049 Score=75.44 Aligned_cols=103 Identities=10% Similarity=0.079 Sum_probs=76.6
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
..-|.+..+|+.|+++|.++.++||+.-.++...+..+ .|.+|||.||+...... ..|
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l--------------gL~~yFd~Iv~sddv~~------~KP-- 273 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI--------------GIRGFFSVIVAAEDVYR------GKP-- 273 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCHHHceEEEecCcCCC------CCC--
Confidence 34589999999999999999999999999999888875 47899999988643210 001
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
...+| ....+.+|. ...+++||||.. .||..++ ..||
T Consensus 274 -----------------------------------~Peif-----l~A~~~lgl-~Peecl~IGDS~-~DIeAAk-~AGm 310 (381)
T PLN02575 274 -----------------------------------DPEMF-----IYAAQLLNF-IPERCIVFGNSN-QTVEAAH-DARM 310 (381)
T ss_pred -----------------------------------CHHHH-----HHHHHHcCC-CcccEEEEcCCH-HHHHHHH-HcCC
Confidence 01122 234555676 689999999987 5866655 6699
Q ss_pred eEEEeecc
Q 006585 491 RTMLVVPE 498 (639)
Q Consensus 491 RT~aIVpE 498 (639)
+|++|...
T Consensus 311 ~~IgV~~~ 318 (381)
T PLN02575 311 KCVAVASK 318 (381)
T ss_pred EEEEECCC
Confidence 99999753
No 36
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.58 E-value=6.6e-05 Score=71.61 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=67.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
..-|.+..+|+.|+++|.++.++||+.. ...+++. ..|.++||.|+....-. ...|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~--------------~~l~~~f~~~~~~~~~~------~~kp-- 142 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK--------------LGLIDYFDAIVDPAEIK------KGKP-- 142 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh--------------cCcHhhCcEEEehhhcC------CCCC--
Confidence 3458999999999999999999999753 3333333 35789999988654211 0001
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
...+|. ..++.++. ...+++||||+. .||..++ ..||
T Consensus 143 -----------------------------------~p~~~~-----~~~~~~~~-~~~~~v~vgD~~-~di~aA~-~aG~ 179 (185)
T TIGR01990 143 -----------------------------------DPEIFL-----AAAEGLGV-SPSECIGIEDAQ-AGIEAIK-AAGM 179 (185)
T ss_pred -----------------------------------ChHHHH-----HHHHHcCC-CHHHeEEEecCH-HHHHHHH-HcCC
Confidence 111221 34555676 578999999996 8977766 5699
Q ss_pred eEEEe
Q 006585 491 RTMLV 495 (639)
Q Consensus 491 RT~aI 495 (639)
+|++|
T Consensus 180 ~~i~v 184 (185)
T TIGR01990 180 FAVGV 184 (185)
T ss_pred EEEec
Confidence 99986
No 37
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.56 E-value=0.0001 Score=72.39 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=68.5
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc----CCCCCCCCCCC
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDNR 406 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A----~KP~FF~e~~~ 406 (639)
...|.+..+|+.||++|.++.++||+.......... +.. ..+.++||.|++.. +||.
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~-~~~-----------~~l~~~fd~v~~s~~~~~~KP~------- 154 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEA-LLP-----------GDIMALFDAVVESCLEGLRKPD------- 154 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhH-hhh-----------hhhHhhCCEEEEeeecCCCCCC-------
Confidence 446789999999999999999999997655332222 111 24678999988542 2220
Q ss_pred CcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccc
Q 006585 407 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 486 (639)
Q Consensus 407 ~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk 486 (639)
..+| ....+.+|. ...+++||||. ..||..++
T Consensus 155 ----------------------------------------p~~~-----~~~~~~~g~-~~~~~l~i~D~-~~di~aA~- 186 (211)
T TIGR02247 155 ----------------------------------------PRIY-----QLMLERLGV-APEECVFLDDL-GSNLKPAA- 186 (211)
T ss_pred ----------------------------------------HHHH-----HHHHHHcCC-CHHHeEEEcCC-HHHHHHHH-
Confidence 1122 335556676 67899999875 66877776
Q ss_pred ccCeeEEEeec
Q 006585 487 VLGWRTMLVVP 497 (639)
Q Consensus 487 ~~gWRT~aIVp 497 (639)
..||.|++|.+
T Consensus 187 ~aG~~~i~v~~ 197 (211)
T TIGR02247 187 ALGITTIKVSD 197 (211)
T ss_pred HcCCEEEEECC
Confidence 55999999864
No 38
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.56 E-value=0.00014 Score=75.92 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=76.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.|+++|.++.++||+.-++++.++..+ .+.+|||.|++....+ +
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~--------------gl~~~F~~vi~~~~~~---------~- 196 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ--------------GLRSLFSVVQAGTPIL---------S- 196 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhheEEEEecCCCC---------C-
Confidence 455789999999999999999999999999999998775 4688999887542100 0
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
+..+ ...+.+.++. ...+++||||.+ .||..++. .|
T Consensus 197 ------------------------------------k~~~-----~~~~l~~~~~-~p~~~l~IGDs~-~Di~aA~~-AG 232 (273)
T PRK13225 197 ------------------------------------KRRA-----LSQLVAREGW-QPAAVMYVGDET-RDVEAARQ-VG 232 (273)
T ss_pred ------------------------------------CHHH-----HHHHHHHhCc-ChhHEEEECCCH-HHHHHHHH-CC
Confidence 0011 2334555676 568999999996 69888876 79
Q ss_pred eeEEEeeccc
Q 006585 490 WRTMLVVPEL 499 (639)
Q Consensus 490 WRT~aIVpEL 499 (639)
|+|++|.-..
T Consensus 233 ~~~I~v~~g~ 242 (273)
T PRK13225 233 LIAVAVTWGF 242 (273)
T ss_pred CeEEEEecCC
Confidence 9999996543
No 39
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.52 E-value=0.00018 Score=70.52 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=76.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+...|....+|+.||++ .++.++||+.-......+..+ .|..+||.|++...-
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~------------ 148 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS--------------GLFPFFDDIFVSEDA------------ 148 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC--------------CcHhhcCEEEEcCcc------------
Confidence 34468899999999999 999999999998888887764 467899999885420
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHh-cccCCCcEEEEccccccccccccccc
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll-~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
|..+ ....+| ....+.+ +. +..+++||||+...||..+++ .
T Consensus 149 -------~~~K------------------------P~~~~~-----~~~~~~~~~~-~~~~~v~igD~~~~di~~A~~-~ 190 (224)
T TIGR02254 149 -------GIQK------------------------PDKEIF-----NYALERMPKF-SKEEVLMIGDSLTADIKGGQN-A 190 (224)
T ss_pred -------CCCC------------------------CCHHHH-----HHHHHHhcCC-CchheEEECCCcHHHHHHHHH-C
Confidence 0000 011122 2445556 76 578999999999899888875 5
Q ss_pred CeeEEEeecc
Q 006585 489 GWRTMLVVPE 498 (639)
Q Consensus 489 gWRT~aIVpE 498 (639)
||.++.+-..
T Consensus 191 G~~~i~~~~~ 200 (224)
T TIGR02254 191 GLDTCWMNPD 200 (224)
T ss_pred CCcEEEECCC
Confidence 9999998654
No 40
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.47 E-value=0.00019 Score=75.17 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.|++.|.++.++||+.-++.+.++..+.+ ..|.++||+| .... .
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~-----------~~~~~~~~~v-~~~~----~-------- 198 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG-----------PERAQGLDVF-AGDD----V-------- 198 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc-----------ccccCceEEE-eccc----c--------
Confidence 45568899999999999999999999999999999987755 4567778765 2210 0
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
+..+ | ... -.....+.++. ...+++||||.+ .||..++. .|
T Consensus 199 -------~~~K------P------------------~p~-----~~~~a~~~~~~-~p~~~l~IGDs~-~Di~aA~~-aG 239 (286)
T PLN02779 199 -------PKKK------P------------------DPD-----IYNLAAETLGV-DPSRCVVVEDSV-IGLQAAKA-AG 239 (286)
T ss_pred -------CCCC------C------------------CHH-----HHHHHHHHhCc-ChHHEEEEeCCH-HhHHHHHH-cC
Confidence 0000 0 001 12335566777 678999999997 69877765 69
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
|++++|..
T Consensus 240 ~~~i~v~~ 247 (286)
T PLN02779 240 MRCIVTKS 247 (286)
T ss_pred CEEEEEcc
Confidence 99998855
No 41
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.44 E-value=0.00019 Score=70.35 Aligned_cols=97 Identities=25% Similarity=0.362 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEe
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 412 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V 412 (639)
.|++..|+.+||++|-|+++++|-.=.=+. ....-+|-+ -|-.|+|| |. ..|++
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~-~~~~~l~v~------------------fi~~A~KP--~~----~~fr~- 101 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVA-RAAEKLGVP------------------FIYRAKKP--FG----RAFRR- 101 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHH-hhhhhcCCc------------------eeecccCc--cH----HHHHH-
Confidence 488999999999999999999994432222 122223311 25678888 11 11111
Q ss_pred eCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCeeE
Q 006585 413 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 492 (639)
Q Consensus 413 ~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT 492 (639)
..+-++. +-++|+.|||.|+.||+..+ ..|-||
T Consensus 102 ---------------------------------------------Al~~m~l-~~~~vvmVGDqL~TDVlggn-r~G~~t 134 (175)
T COG2179 102 ---------------------------------------------ALKEMNL-PPEEVVMVGDQLFTDVLGGN-RAGMRT 134 (175)
T ss_pred ---------------------------------------------HHHHcCC-ChhHEEEEcchhhhhhhccc-ccCcEE
Confidence 2233455 67999999999999999887 569999
Q ss_pred EEeecccHHH
Q 006585 493 MLVVPELERE 502 (639)
Q Consensus 493 ~aIVpELe~E 502 (639)
++|.|=-..+
T Consensus 135 IlV~Pl~~~d 144 (175)
T COG2179 135 ILVEPLVAPD 144 (175)
T ss_pred EEEEEecccc
Confidence 9999854433
No 42
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.41 E-value=0.00019 Score=69.16 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=70.1
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCc
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p 408 (639)
.+...|.+..+|++|+ +++.++||+.-.++...+..+ .+.++||.|++...-.. +.+
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~--------------gl~~~fd~i~~~~~~~~------~~~ 138 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL--------------GIEDCFDGIFCFDTANP------DYL 138 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc--------------CcHhhhCeEEEeecccC------ccC
Confidence 3456788999999997 479999999999888888766 36789999887643210 000
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
..+ ....+| ....+.+|. ...+++||||+. .||..++ ..
T Consensus 139 ---------~~K------------------------P~p~~~-----~~~~~~~~~-~~~~~l~vgD~~-~di~aA~-~~ 177 (184)
T TIGR01993 139 ---------LPK------------------------PSPQAY-----EKALREAGV-DPERAIFFDDSA-RNIAAAK-AL 177 (184)
T ss_pred ---------CCC------------------------CCHHHH-----HHHHHHhCC-CccceEEEeCCH-HHHHHHH-Hc
Confidence 000 001122 334555676 678999999997 5866665 56
Q ss_pred CeeEEEe
Q 006585 489 GWRTMLV 495 (639)
Q Consensus 489 gWRT~aI 495 (639)
|++|++|
T Consensus 178 G~~~i~v 184 (184)
T TIGR01993 178 GMKTVLV 184 (184)
T ss_pred CCEEeeC
Confidence 9999875
No 43
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.38 E-value=0.00043 Score=66.02 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=71.6
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCc
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 408 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p 408 (639)
.+...|.+..+|+.|+++|.++.++||+ ..+..+++.+ .|.+|||.|++....+ ...|
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~--------------~l~~~f~~v~~~~~~~------~~kp 143 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL--------------GLTDYFDAIVDADEVK------EGKP 143 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc--------------ChHHHCCEeeehhhCC------CCCC
Confidence 4677899999999999999999999999 6666666653 4788999988742111 0000
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
...+| ..+.+-++. ...+++||||.. .||..+++ .
T Consensus 144 -------------------------------------~~~~~-----~~~~~~~~~-~~~~~v~IgD~~-~di~aA~~-~ 178 (185)
T TIGR02009 144 -------------------------------------HPETF-----LLAAELLGV-SPNECVVFEDAL-AGVQAARA-A 178 (185)
T ss_pred -------------------------------------ChHHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHHHHHH-C
Confidence 01122 245555676 578999999995 79877764 5
Q ss_pred CeeEEEe
Q 006585 489 GWRTMLV 495 (639)
Q Consensus 489 gWRT~aI 495 (639)
||+|++|
T Consensus 179 G~~~i~v 185 (185)
T TIGR02009 179 GMFAVAV 185 (185)
T ss_pred CCeEeeC
Confidence 9999875
No 44
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.37 E-value=0.00027 Score=71.91 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=74.2
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE--ccCCCCCCCCCCCCc
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT--GSAKPGFFHEDNRAN 408 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv--~A~KP~FF~e~~~~p 408 (639)
..-|.+..+|++|+++|.++.++||+.-..+..++.+.-. .++.+|||.++. -+.||
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~-----------~~L~~~f~~~fd~~~g~KP---------- 153 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA-----------GNLTPYFSGYFDTTVGLKT---------- 153 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc-----------cchhhhcceEEEeCcccCC----------
Confidence 3458899999999999999999999999999988887632 245566664321 00122
Q ss_pred ceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccccccc
Q 006585 409 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 488 (639)
Q Consensus 409 ~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~ 488 (639)
... ......+.+|. ...++|||||+. .||..++ ..
T Consensus 154 -------------------------------------~p~-----~y~~i~~~lgv-~p~e~lfVgDs~-~Di~AA~-~A 188 (220)
T TIGR01691 154 -------------------------------------EAQ-----SYVKIAGQLGS-PPREILFLSDII-NELDAAR-KA 188 (220)
T ss_pred -------------------------------------CHH-----HHHHHHHHhCc-ChhHEEEEeCCH-HHHHHHH-Hc
Confidence 011 23445666787 578999999995 8877665 57
Q ss_pred CeeEEEeeccc
Q 006585 489 GWRTMLVVPEL 499 (639)
Q Consensus 489 gWRT~aIVpEL 499 (639)
||+|++|++.=
T Consensus 189 G~~ti~v~r~g 199 (220)
T TIGR01691 189 GLHTGQLVRPG 199 (220)
T ss_pred CCEEEEEECCC
Confidence 99999998754
No 45
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.31 E-value=0.00039 Score=67.33 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=33.5
Q ss_pred HHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeecccH
Q 006585 457 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 500 (639)
Q Consensus 457 ~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe 500 (639)
..++-++. ...+++||||+++.||..++. .||+|++|-+.-.
T Consensus 99 ~~l~~~~~-~~~~~l~IGDs~~~Di~aA~~-aGi~~i~v~~g~~ 140 (170)
T TIGR01668 99 RAHPEMGL-TSEQVAVVGDRLFTDVMGGNR-NGSYTILVEPLVH 140 (170)
T ss_pred HHHHHcCC-CHHHEEEECCcchHHHHHHHH-cCCeEEEEccCcC
Confidence 34555676 578999999999999888874 5999999976653
No 46
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.18 E-value=0.0016 Score=67.64 Aligned_cols=103 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
...-|.+..+|+.|+++|.++.++||+.-.+...++..+ .|..+||.|++...-|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~--------------~i~~~f~~i~~~d~~~----------- 154 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM--------------KIGRYFRWIIGGDTLP----------- 154 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc--------------CcHhhCeEEEecCCCC-----------
Confidence 345699999999999999999999999988777777654 4678899876642100
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
.++ .+. .-...+.+.+|+ ...+++||||+ ..||..++. .|
T Consensus 155 ------~~K--------------------------p~p-----~~~~~~~~~~g~-~~~~~l~IGD~-~~Di~aA~~-aG 194 (272)
T PRK13223 155 ------QKK--------------------------PDP-----AALLFVMKMAGV-PPSQSLFVGDS-RSDVLAAKA-AG 194 (272)
T ss_pred ------CCC--------------------------CCc-----HHHHHHHHHhCC-ChhHEEEECCC-HHHHHHHHH-CC
Confidence 000 001 123345666777 67899999999 699888775 59
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
|+|++|.-
T Consensus 195 i~~i~v~~ 202 (272)
T PRK13223 195 VQCVALSY 202 (272)
T ss_pred CeEEEEec
Confidence 99999854
No 47
>PRK11587 putative phosphatase; Provisional
Probab=97.12 E-value=0.0012 Score=65.74 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=67.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc----CCCCCCCCCC
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDN 405 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A----~KP~FF~e~~ 405 (639)
+..-|.+..+|+.|+++|.++.++||+...++....... | ..+||.|++.. .||
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~-~--------------l~~~~~i~~~~~~~~~KP------- 139 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA-G--------------LPAPEVFVTAERVKRGKP------- 139 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc-C--------------CCCccEEEEHHHhcCCCC-------
Confidence 345689999999999999999999999988776555422 2 24577766532 111
Q ss_pred CCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccc
Q 006585 406 RANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 485 (639)
Q Consensus 406 ~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sK 485 (639)
...+| ....+.+|. ...+++||||+. .||..++
T Consensus 140 ----------------------------------------~p~~~-----~~~~~~~g~-~p~~~l~igDs~-~di~aA~ 172 (218)
T PRK11587 140 ----------------------------------------EPDAY-----LLGAQLLGL-APQECVVVEDAP-AGVLSGL 172 (218)
T ss_pred ----------------------------------------CcHHH-----HHHHHHcCC-CcccEEEEecch-hhhHHHH
Confidence 01112 224455676 579999999995 6876665
Q ss_pred cccCeeEEEeec
Q 006585 486 KVLGWRTMLVVP 497 (639)
Q Consensus 486 k~~gWRT~aIVp 497 (639)
..|+.|++|-.
T Consensus 173 -~aG~~~i~v~~ 183 (218)
T PRK11587 173 -AAGCHVIAVNA 183 (218)
T ss_pred -HCCCEEEEECC
Confidence 66999999853
No 48
>PLN02811 hydrolase
Probab=97.11 E-value=0.0011 Score=66.01 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEe
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 412 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V 412 (639)
-|.+..+|+.|+++|.++.++||+.-.+....+.-. ..|.++||.|++... |..-.
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~-------------~~l~~~f~~i~~~~~-~~~~~---------- 135 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH-------------GELFSLMHHVVTGDD-PEVKQ---------- 135 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc-------------HHHHhhCCEEEECCh-hhccC----------
Confidence 488999999999999999999999876443322111 247889998887541 00000
Q ss_pred eCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhc---ccCCCcEEEEcccccccccccccccC
Q 006585 413 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLS---IESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 413 ~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~---~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
++ ....+| ....+.++ . ...+++||||+. .||..++ ..|
T Consensus 136 ----~K--------------------------P~p~~~-----~~a~~~~~~~~~-~~~~~v~IgDs~-~di~aA~-~aG 177 (220)
T PLN02811 136 ----GK--------------------------PAPDIF-----LAAARRFEDGPV-DPGKVLVFEDAP-SGVEAAK-NAG 177 (220)
T ss_pred ----CC--------------------------CCcHHH-----HHHHHHhCCCCC-CccceEEEeccH-hhHHHHH-HCC
Confidence 00 001122 12233333 4 468999999998 5866665 569
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
++|++|-.
T Consensus 178 ~~~i~v~~ 185 (220)
T PLN02811 178 MSVVMVPD 185 (220)
T ss_pred CeEEEEeC
Confidence 99999954
No 49
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.10 E-value=0.00064 Score=66.96 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCChHHHHHHHHhcCCeEEEecCC-ChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceE
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 411 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS-~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~ 411 (639)
-|.+..+|+.|+++|.+++++||+ .-.++..+|.++--.. ..+...--+|||.||+.. +| .. ..|.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~-----~~~~~~~~~~Fd~iv~~~-~~---~~--~kp~-- 113 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITY-----AGKTVPMHSLFDDRIEIY-KP---NK--AKQL-- 113 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCC-----CCCcccHHHhceeeeecc-CC---ch--HHHH--
Confidence 478899999999999999999999 8999999998862100 011223338999988853 22 00 0000
Q ss_pred eeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHh--cccCCCcEEEEcccccccccccccccC
Q 006585 412 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL--SIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 412 V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll--~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
..+ +..+.+.+ +. .-.+++||||... ||.. -+..|
T Consensus 114 -----------------------------------~~i-----~~~~~~~~~~gl-~p~e~l~VgDs~~-di~a-A~~aG 150 (174)
T TIGR01685 114 -----------------------------------EMI-----LQKVNKVDPSVL-KPAQILFFDDRTD-NVRE-VWGYG 150 (174)
T ss_pred -----------------------------------HHH-----HHHhhhcccCCC-CHHHeEEEcChhH-hHHH-HHHhC
Confidence 000 12222333 34 4689999999995 5544 55789
Q ss_pred eeEEEeec
Q 006585 490 WRTMLVVP 497 (639)
Q Consensus 490 WRT~aIVp 497 (639)
++|++|..
T Consensus 151 i~~i~v~~ 158 (174)
T TIGR01685 151 VTSCYCPS 158 (174)
T ss_pred CEEEEcCC
Confidence 99999954
No 50
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.08 E-value=0.00048 Score=69.78 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=68.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.||+. .++.++||+..+ ++. ..+.+|||.||+...-. ...|
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~--------------~gl~~~fd~i~~~~~~~------~~KP- 164 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PEL--------------FGLGDYFEFVLRAGPHG------RSKP- 164 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHH--------------CCcHHhhceeEecccCC------cCCC-
Confidence 55668899999999975 789999998764 111 34688999888654210 0001
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
+..+| ....+.+|. ...+++||||++..||..++. .|
T Consensus 165 ------------------------------------~p~~~-----~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~~-aG 201 (238)
T PRK10748 165 ------------------------------------FSDMY-----HLAAEKLNV-PIGEILHVGDDLTTDVAGAIR-CG 201 (238)
T ss_pred ------------------------------------cHHHH-----HHHHHHcCC-ChhHEEEEcCCcHHHHHHHHH-CC
Confidence 01111 123344566 568999999999999988775 69
Q ss_pred eeEEEeecc
Q 006585 490 WRTMLVVPE 498 (639)
Q Consensus 490 WRT~aIVpE 498 (639)
|+|+.|-+.
T Consensus 202 ~~~i~v~~~ 210 (238)
T PRK10748 202 MQACWINPE 210 (238)
T ss_pred CeEEEEcCC
Confidence 999998664
No 51
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.00 E-value=0.002 Score=71.79 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=72.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 409 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~ 409 (639)
+..-|.+..+|+.||++|.++.++||+.-+++..+++++ +|.+|||.|++.-.-+. .
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~--------------~l~~~f~~i~~~d~v~~---~------ 385 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY--------------DLDQWVTETFSIEQINS---L------ 385 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC--------------CcHhhcceeEecCCCCC---C------
Confidence 344689999999999999999999999999999999875 47889999886431000 0
Q ss_pred eEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccC
Q 006585 410 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 489 (639)
Q Consensus 410 f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~g 489 (639)
.+..+| ....+-+ ..++++||||+. .||..+| ..|
T Consensus 386 -----------------------------------~kP~~~-----~~al~~l---~~~~~v~VGDs~-~Di~aAk-~AG 420 (459)
T PRK06698 386 -----------------------------------NKSDLV-----KSILNKY---DIKEAAVVGDRL-SDINAAK-DNG 420 (459)
T ss_pred -----------------------------------CCcHHH-----HHHHHhc---CcceEEEEeCCH-HHHHHHH-HCC
Confidence 000111 1111112 246899999997 9987775 569
Q ss_pred eeEEEeecc
Q 006585 490 WRTMLVVPE 498 (639)
Q Consensus 490 WRT~aIVpE 498 (639)
++|++|-..
T Consensus 421 ~~~I~v~~~ 429 (459)
T PRK06698 421 LIAIGCNFD 429 (459)
T ss_pred CeEEEEeCC
Confidence 999998653
No 52
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.83 E-value=0.0022 Score=59.72 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=39.8
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 394 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~ 394 (639)
|.+..+|+.|+++|.++.++||+....+...+.+. . .++|+.|++.
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l--------------~~~f~~i~~~ 112 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L--------------GDYFDLILGS 112 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H--------------HhcCcEEEec
Confidence 67999999999999999999999999999999886 2 3568887753
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.77 E-value=0.0052 Score=57.88 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=30.6
Q ss_pred HHHHHHHhcccCCCcEEEEcccccccccccccccCeeEEEee
Q 006585 455 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 496 (639)
Q Consensus 455 ~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 496 (639)
+..+.+.++. ...+++||||+ ..||..++ ..||+|++|.
T Consensus 107 ~~~~~~~~~~-~~~e~i~IGDs-~~Di~~A~-~~Gi~~v~i~ 145 (147)
T TIGR01656 107 ILEALKRLGV-DASRSLVVGDR-LRDLQAAR-NAGLAAVLLV 145 (147)
T ss_pred HHHHHHHcCC-ChHHEEEEcCC-HHHHHHHH-HCCCCEEEec
Confidence 3445666676 57899999999 88987775 6799999985
No 54
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.66 E-value=0.0052 Score=59.51 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=67.9
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEecCCC---------------hhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 006585 329 YINEDRSIVPMLKMLRESGRSTFLVTNSL---------------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 393 (639)
Q Consensus 329 YI~kdp~L~~~L~~Lr~~GKKlFLiTNS~---------------~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv 393 (639)
.+..-|.+..+|+.|+++|.+++++||.. ..+++.+...+ ++. ||-+++
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~--------------gl~--fd~ii~ 90 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ--------------GII--FDDVLI 90 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC--------------CCc--eeEEEE
Confidence 45557899999999999999999999963 33333333332 233 876665
Q ss_pred ccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEE
Q 006585 394 GSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYV 473 (639)
Q Consensus 394 ~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYf 473 (639)
.+.+|. +. . +..+ .+ -+-+..+.+.++. ...+++||
T Consensus 91 ~~~~~~---~~-~----------~~~K------------------------P~-----~~~~~~~~~~~~~-~~~e~l~I 126 (161)
T TIGR01261 91 CPHFPD---DN-C----------DCRK------------------------PK-----IKLLEPYLKKNLI-DKARSYVI 126 (161)
T ss_pred CCCCCC---CC-C----------CCCC------------------------CC-----HHHHHHHHHHcCC-CHHHeEEE
Confidence 533331 10 0 0000 00 1123445555665 56899999
Q ss_pred cccccccccccccccCeeEEEeec
Q 006585 474 GDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 474 GDHIygDIl~sKk~~gWRT~aIVp 497 (639)
||. ..||..++ ..||.+++|-+
T Consensus 127 GD~-~~Di~~A~-~aGi~~i~~~~ 148 (161)
T TIGR01261 127 GDR-ETDMQLAE-NLGIRGIQYDE 148 (161)
T ss_pred eCC-HHHHHHHH-HCCCeEEEECh
Confidence 998 67987776 66999999854
No 55
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.55 E-value=0.0057 Score=59.28 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=29.2
Q ss_pred HHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeec
Q 006585 457 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 457 ~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 497 (639)
...+.++. ...+++||||+. .||..++ ..||++++|-.
T Consensus 111 ~~~~~l~~-~~~~~~~VgDs~-~Di~~A~-~aG~~~i~v~~ 148 (181)
T PRK08942 111 SIAERLNI-DLAGSPMVGDSL-RDLQAAA-AAGVTPVLVRT 148 (181)
T ss_pred HHHHHcCC-ChhhEEEEeCCH-HHHHHHH-HCCCeEEEEcC
Confidence 35556676 578999999997 5987776 46998888754
No 56
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.54 E-value=0.037 Score=56.81 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=75.2
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCC
Q 006585 325 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHED 404 (639)
Q Consensus 325 npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~ 404 (639)
.|-.+|.+|+.|+.+|..||..+ ..+-||+.=.-+..+.++| | =.|.||.||+-- .
T Consensus 94 LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L-G-------------ieDcFegii~~e-------~- 149 (244)
T KOG3109|consen 94 LPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL-G-------------IEDCFEGIICFE-------T- 149 (244)
T ss_pred CcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh-C-------------hHHhccceeEee-------c-
Confidence 35566899999999999999987 4556999999999999998 3 268999998732 1
Q ss_pred CCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccccccccc
Q 006585 405 NRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRS 484 (639)
Q Consensus 405 ~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~s 484 (639)
. .|. ++-. |- ++ +.+......+..|+.+-.++++|-|+ .+.|...
T Consensus 150 ~-np~-----~~~~------------vc------------KP----~~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~a 194 (244)
T KOG3109|consen 150 L-NPI-----EKTV------------VC------------KP----SEEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTA 194 (244)
T ss_pred c-CCC-----CCce------------ee------------cC----CHHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHH
Confidence 1 121 1100 00 00 01123334555666334556666555 5677777
Q ss_pred ccccCeeEEEeeccc
Q 006585 485 KKVLGWRTMLVVPEL 499 (639)
Q Consensus 485 Kk~~gWRT~aIVpEL 499 (639)
|. .||+|++|-.|=
T Consensus 195 k~-vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 195 KE-VGLKTVLVGREH 208 (244)
T ss_pred Hh-ccceeEEEEeee
Confidence 64 599999997764
No 57
>PRK06769 hypothetical protein; Validated
Probab=96.52 E-value=0.0035 Score=60.90 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeeccc
Q 006585 456 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 499 (639)
Q Consensus 456 ~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 499 (639)
....+.++. .-.+++||||+. .||..++ ..||.|++|-..-
T Consensus 100 ~~~~~~l~~-~p~~~i~IGD~~-~Di~aA~-~aGi~~i~v~~g~ 140 (173)
T PRK06769 100 LQAAEKHGL-DLTQCAVIGDRW-TDIVAAA-KVNATTILVRTGA 140 (173)
T ss_pred HHHHHHcCC-CHHHeEEEcCCH-HHHHHHH-HCCCeEEEEecCC
Confidence 345555665 568999999997 8987776 5599999997643
No 58
>PRK11590 hypothetical protein; Provisional
Probab=96.31 E-value=0.083 Score=52.68 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=33.9
Q ss_pred cccCCChHHHH-HHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 330 INEDRSIVPML-KMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 330 I~kdp~L~~~L-~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+..-|.....| +.+++.|.++.++|||+-.|+..++.++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l 133 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT 133 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc
Confidence 34468899999 5688899999999999999999999986
No 59
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.29 E-value=0.12 Score=55.76 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=34.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+...|....+|+.||+.|.++.++||+...|++.++..+
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L 218 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL 218 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc
Confidence 445788899999999999999999999999998887754
No 60
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.10 E-value=0.016 Score=56.07 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCCh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLW 358 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~ 358 (639)
-|.+..+|+.|+++|.++.++||++-
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 48899999999999999999999983
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.55 E-value=0.029 Score=54.55 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=29.2
Q ss_pred hCcccccccCCChHHHHHHHHhcCCeEEEecCCChh
Q 006585 324 KDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWD 359 (639)
Q Consensus 324 ~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~d 359 (639)
.+|++....-|.+..+|++|+++|.++.++||.+-.
T Consensus 35 ~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~ 70 (166)
T TIGR01664 35 TSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGI 70 (166)
T ss_pred CChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 355555555688999999999999999999997753
No 62
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.54 E-value=0.18 Score=51.03 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=72.2
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcce
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 410 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f 410 (639)
..-|.+..+|+.|++.|.++-+.|||+-.-+..+++-+-. .+|||.||+.+.=+ . ..|
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl--------------~~~f~~~v~~~dv~----~--~KP-- 143 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGL--------------LDYFDVIVTADDVA----R--GKP-- 143 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccC--------------hhhcchhccHHHHh----c--CCC--
Confidence 3458899999999999999999999998777777765522 68999988765411 0 001
Q ss_pred EeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 411 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 411 ~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
..-+|.. --+.||. ...+++.|.|...| +.+-+..|-
T Consensus 144 -----------------------------------~Pd~yL~-----Aa~~Lgv-~P~~CvviEDs~~G--i~Aa~aAGm 180 (221)
T COG0637 144 -----------------------------------APDIYLL-----AAERLGV-DPEECVVVEDSPAG--IQAAKAAGM 180 (221)
T ss_pred -----------------------------------CCHHHHH-----HHHHcCC-ChHHeEEEecchhH--HHHHHHCCC
Confidence 1113311 2345676 67899999999888 556667788
Q ss_pred eEEEeec
Q 006585 491 RTMLVVP 497 (639)
Q Consensus 491 RT~aIVp 497 (639)
+++.|..
T Consensus 181 ~vv~v~~ 187 (221)
T COG0637 181 RVVGVPA 187 (221)
T ss_pred EEEEecC
Confidence 8888875
No 63
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.14 E-value=0.0054 Score=63.35 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=67.1
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc-CCCCCCCCCCCCcceEe
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS-AKPGFFHEDNRANLFQV 412 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A-~KP~FF~e~~~~p~f~V 412 (639)
+.+...++.|++.|+++|+.||.+-.|....... ..+-.+|+.|.... .+|.++.. |
T Consensus 123 ~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~--------------~g~g~~~~~i~~~~~~~~~~~gK----P---- 180 (257)
T TIGR01458 123 QILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA--------------LDVGPFVTALEYATDTKATVVGK----P---- 180 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC--------------CCchHHHHHHHHHhCCCceeecC----C----
Confidence 3456677788888899999999998877543321 24567787766432 23322221 1
Q ss_pred eCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccccccCeeE
Q 006585 413 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 492 (639)
Q Consensus 413 ~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT 492 (639)
...+| ....+.++. ...++++|||++..||.-++. .||+|
T Consensus 181 ---------------------------------~p~~~-----~~~~~~~~~-~~~~~~~vGD~~~~Di~~a~~-~G~~~ 220 (257)
T TIGR01458 181 ---------------------------------SKTFF-----LEALRATGC-EPEEAVMIGDDCRDDVGGAQD-CGMRG 220 (257)
T ss_pred ---------------------------------CHHHH-----HHHHHHhCC-ChhhEEEECCCcHHHHHHHHH-cCCeE
Confidence 01122 123344565 578999999999999887774 59999
Q ss_pred EEeecc
Q 006585 493 MLVVPE 498 (639)
Q Consensus 493 ~aIVpE 498 (639)
++|..-
T Consensus 221 i~v~~G 226 (257)
T TIGR01458 221 IQVRTG 226 (257)
T ss_pred EEECCC
Confidence 999643
No 64
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.07 E-value=0.062 Score=58.69 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=65.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCC----hhhh-------HHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSL----WDYT-------TIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 398 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~----~dYt-------n~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP 398 (639)
+...|.+..+|..|+++|.+++++||.. -.|. +..|.-++.. ..+ +||.|+..+..|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~----------~gl--~fd~i~i~~~~~ 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES----------QGI--KFDEVLICPHFP 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH----------cCC--ceeeEEEeCCcC
Confidence 4557999999999999999999999951 1122 1123323331 122 377766655333
Q ss_pred CCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEccccc
Q 006585 399 GFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIY 478 (639)
Q Consensus 399 ~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIy 478 (639)
++. .. .++ | + -+-+..+.+.++. ...+++||||..
T Consensus 97 ---sd~--~~-------~rK--------P------------------~-----p~~l~~a~~~l~v-~~~~svmIGDs~- 131 (354)
T PRK05446 97 ---EDN--CS-------CRK--------P------------------K-----TGLVEEYLAEGAI-DLANSYVIGDRE- 131 (354)
T ss_pred ---ccc--CC-------CCC--------C------------------C-----HHHHHHHHHHcCC-CcccEEEEcCCH-
Confidence 110 00 000 0 0 1122334444565 568999999985
Q ss_pred ccccccccccCeeEEEeec
Q 006585 479 GDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 479 gDIl~sKk~~gWRT~aIVp 497 (639)
+|+..++ ..||++++|=|
T Consensus 132 sDi~aAk-~aGi~~I~v~~ 149 (354)
T PRK05446 132 TDVQLAE-NMGIKGIRYAR 149 (354)
T ss_pred HHHHHHH-HCCCeEEEEEC
Confidence 8987776 56999999844
No 65
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=94.91 E-value=0.091 Score=50.66 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=34.0
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
..|....+|+.|+++|.+++++||+.-.++..++..+
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 117 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL 117 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh
Confidence 4578899999999999999999999999999999876
No 66
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.91 E-value=0.14 Score=54.60 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHh---hccCCCCCCCCCCCCCCccCccEEEEc
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF---LCGSHTLDGGITCNSDWLLYFDVVITG 394 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~y---l~g~~~~~~~~~~~~dWrdyFDvVIv~ 394 (639)
-+.+..+|+.|++.|.++.++||.+...+..++.. ++| ..++||.|+..
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~-------------~~~~f~~~~~~ 84 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFIL-------------QAEDFDARSIN 84 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccC-------------cHHHeeEEEEe
Confidence 36788999999999999999999999999999986 223 36789988665
No 67
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.02 E-value=0.12 Score=50.93 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=34.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+...|.+..+|+.|+++|.++.++||+.-.++..++..+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 122 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL 122 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 346789999999999999999999999999998888765
No 68
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=93.91 E-value=0.016 Score=60.29 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=30.7
Q ss_pred HHHHhcccCCCcEEEEcccccccccccccccCeeEEEee
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 496 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 496 (639)
+.+.++. ...+++||||.+..||.-++. .||+|++|-
T Consensus 211 ~~~~~~~-~~~~~lmIGD~~~tDI~~A~~-aGi~si~V~ 247 (279)
T TIGR01452 211 ITENFSI-DPARTLMVGDRLETDILFGHR-CGMTTVLVL 247 (279)
T ss_pred HHHHhCC-ChhhEEEECCChHHHHHHHHH-cCCcEEEEC
Confidence 4455666 578999999999999988875 699999994
No 69
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=93.44 E-value=0.37 Score=48.17 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=36.3
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 369 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~ 369 (639)
+...|.+..+|+.|+++|.+++++||+.-.|+..++..++
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 4567899999999999999999999999999999998763
No 70
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=93.39 E-value=0.061 Score=49.85 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHhcCCeEEEecCC-ChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 398 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS-~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP 398 (639)
-|.+..+|+.||++|.++.++||+ .-+++..++... |. . +.-..+.++||.+++...||
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~-~-----~~i~~l~~~f~~~~~~~~~p 90 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-ED-F-----GIIFPLAEYFDPLTIGYWLP 90 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cc-c-----ccchhhHhhhhhhhhcCCCc
Confidence 367889999999999999999999 899999988765 20 0 00011688999988875554
No 71
>PLN02954 phosphoserine phosphatase
Probab=93.34 E-value=0.47 Score=46.96 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=34.2
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
..|.+..+|+.|+++|.++.++||+.-.++..++..+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4689999999999999999999999999999998874
No 72
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=92.91 E-value=0.03 Score=56.90 Aligned_cols=38 Identities=39% Similarity=0.517 Sum_probs=28.4
Q ss_pred HHHHhcccCCCcEEEEcccccccccccccccCeeEEEee
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 496 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 496 (639)
..+.++.....+++||||.+..||.-++. .|++|++|.
T Consensus 204 ~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v~ 241 (242)
T TIGR01459 204 ALKECSNIPKNRMLMVGDSFYTDILGANR-LGIDTALVL 241 (242)
T ss_pred HHHHcCCCCcccEEEECCCcHHHHHHHHH-CCCeEEEEe
Confidence 44445542235899999999999988774 599999873
No 73
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=92.69 E-value=0.43 Score=50.41 Aligned_cols=31 Identities=45% Similarity=0.661 Sum_probs=26.6
Q ss_pred CcEEEEcccccccccccccccCeeEEEeeccc
Q 006585 468 SQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 499 (639)
Q Consensus 468 ~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 499 (639)
+++|-|||.+.+||.-.+ ..||.|++|.==.
T Consensus 208 ~~~~mVGD~~~TDI~~a~-~~G~~t~LV~TGv 238 (269)
T COG0647 208 SEVLMVGDRLDTDILGAK-AAGLDTLLVLTGV 238 (269)
T ss_pred ccEEEEcCCchhhHHHHH-HcCCCEEEEccCC
Confidence 599999999999998887 5699999996444
No 74
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.35 E-value=0.54 Score=46.48 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=23.6
Q ss_pred CCCcEEEEcccccccccccccccCeeEEEe
Q 006585 466 SSSQVLYVGDHIYGDILRSKKVLGWRTMLV 495 (639)
Q Consensus 466 ~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 495 (639)
+-+++.-|||.++.||+-.... |-.|++|
T Consensus 135 ~p~eiavIGDrl~TDVl~gN~~-G~~tilv 163 (168)
T PF09419_consen 135 SPSEIAVIGDRLFTDVLMGNRM-GSYTILV 163 (168)
T ss_pred CchhEEEEcchHHHHHHHhhcc-CceEEEE
Confidence 4689999999999999999864 6556554
No 75
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=92.34 E-value=0.26 Score=52.77 Aligned_cols=67 Identities=25% Similarity=0.245 Sum_probs=54.5
Q ss_pred ccchhHHHHHhCccccc-ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 006585 314 RDGTLKQMVAKDPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 392 (639)
Q Consensus 314 ~~G~lk~~v~~npeKYI-~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVI 392 (639)
.||+|-.. ++=| .+||.+..+|++|+++|.++.|+||+.-+++..+|+.+ | ..+|||+||
T Consensus 133 LDgTLi~~-----~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-G-------------Ld~YFdvII 193 (301)
T TIGR01684 133 LDSTLITD-----EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-K-------------LDRYFDIII 193 (301)
T ss_pred cCCCCcCC-----CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-C-------------CCcccCEEE
Confidence 57887633 4434 56899999999999999999999999999999888875 3 367999999
Q ss_pred EccCCCC
Q 006585 393 TGSAKPG 399 (639)
Q Consensus 393 v~A~KP~ 399 (639)
++.....
T Consensus 194 s~Gdv~~ 200 (301)
T TIGR01684 194 SGGHKAE 200 (301)
T ss_pred ECCcccc
Confidence 9886543
No 76
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=91.88 E-value=0.5 Score=45.94 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.|....+|+.++++|.++.++|||.-.++..+++++
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l 124 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL 124 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc
Confidence 467788999999999999999999999999999865
No 77
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=91.71 E-value=1.3 Score=44.15 Aligned_cols=41 Identities=5% Similarity=0.140 Sum_probs=36.9
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 328 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 328 KYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+.+.-.|.+..+|+.|+++|.++.++|||.-.|+..++..+
T Consensus 67 ~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 67 ETAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred hcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 34667799999999999999999999999999999999876
No 78
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=91.66 E-value=0.053 Score=51.53 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=32.3
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 393 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv 393 (639)
..-|.+..+|+ ++.++||++-.+....+..+ | ..+|||.||+
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~-~-------------l~~~fd~v~~ 131 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQA-G-------------LPWYFDRAFS 131 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC-C-------------CHHHHhhhcc
Confidence 34577777777 37899999999999888765 2 4778998764
No 79
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=91.55 E-value=0.29 Score=47.22 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
-|+...+|+.||++|.++.++|+.+...+..+.+.+
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l 164 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL 164 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc
Confidence 388999999999999999999999999999999965
No 80
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=91.46 E-value=0.39 Score=51.53 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=53.0
Q ss_pred ccchhHHHHHhCccccc-ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 006585 314 RDGTLKQMVAKDPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 392 (639)
Q Consensus 314 ~~G~lk~~v~~npeKYI-~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVI 392 (639)
.||+|-.. ++=| .++|.+..+|++|+++|.++.++||..-+++...+..+ ...+|||+||
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l--------------gL~~yFDvII 195 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET--------------KLEGYFDIII 195 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc--------------CCCccccEEE
Confidence 57887643 3333 56899999999999999999999999999998888765 3468999999
Q ss_pred EccCCC
Q 006585 393 TGSAKP 398 (639)
Q Consensus 393 v~A~KP 398 (639)
++....
T Consensus 196 ~~g~i~ 201 (303)
T PHA03398 196 CGGRKA 201 (303)
T ss_pred ECCCcc
Confidence 987644
No 81
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=91.17 E-value=0.13 Score=50.51 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHhhccchhH-HHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 310 DLCHRDGTLK-QMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 310 d~vH~~G~lk-~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
|-|+.||+++ ..-=+.+.+|=.+|. .-+++|+++|.++.++||.+..+++..+..+
T Consensus 15 dGv~tdg~~~~~~~g~~~~~~~~~D~---~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l 71 (169)
T TIGR02726 15 DGVMTDGRIVINDEGIESRNFDIKDG---MGVIVLQLCGIDVAIITSKKSGAVRHRAEEL 71 (169)
T ss_pred ceeeECCeEEEcCCCcEEEEEecchH---HHHHHHHHCCCEEEEEECCCcHHHHHHHHHC
Confidence 4456666532 111122333333332 4577888899999999999999999999988
No 82
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=90.81 E-value=0.18 Score=42.22 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=34.4
Q ss_pred HHHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeecccH
Q 006585 456 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 500 (639)
Q Consensus 456 ~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe 500 (639)
....+.++. ...++++|||.+..||.-++ ..||+|++|.--..
T Consensus 11 ~~a~~~~~~-~~~~~~~VGD~~~~Di~~a~-~~G~~~ilV~tG~~ 53 (75)
T PF13242_consen 11 EQALKRLGV-DPSRCVMVGDSLETDIEAAK-AAGIDTILVLTGVY 53 (75)
T ss_dssp HHHHHHHTS-GGGGEEEEESSTTTHHHHHH-HTTSEEEEESSSSS
T ss_pred HHHHHHcCC-CHHHEEEEcCCcHhHHHHHH-HcCCcEEEECCCCC
Confidence 445566666 46899999999999998887 56999999976553
No 83
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=89.53 E-value=0.99 Score=42.89 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=43.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 394 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~ 394 (639)
+...|.+..+|+.|++.|-++.++||+.-.++..++..+ +|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI--------------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc--------------CChhheeEEecc
Confidence 445677999999999999999999999999988888764 468899998853
No 84
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=88.40 E-value=0.3 Score=46.63 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=26.7
Q ss_pred HHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 339 MLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 339 ~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.|++|+++|.+++++||.....+..++..+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~ 65 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL 65 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc
Confidence 699999999999999999998888777655
No 85
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=88.24 E-value=0.0087 Score=65.74 Aligned_cols=199 Identities=10% Similarity=-0.202 Sum_probs=132.5
Q ss_pred CCCCCceEEeCcccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChhhcCCCCCccccccceeeecCCC
Q 006585 140 IDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEELLEWSFDWKYMVRGLVLDKKRG 219 (639)
Q Consensus 140 ~~~~~~VF~NR~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ell~~~yDp~F~iRGLv~D~~~G 219 (639)
+..+-.++++++|... +.+.+++++|++. |..+..+.+.|..--..|. ..+++-..++..+++-++.+|+.++...+
T Consensus 37 TL~~Y~~~~~esLay~-~~~~~l~~~Gyp~-~ll~~~~d~~f~~rGL~ld-~~~GN~lKld~~~~vl~a~hg~rfls~~~ 113 (424)
T KOG2469|consen 37 TLARYNLPEMESLAYD-LAQFLLKDKGYPN-ELLSTSFDWNFPCRGLVLD-KERGNLLKLDRFGYVLRAAHGTRFLSNEE 113 (424)
T ss_pred chhhhcccchHHHHHH-HHHHHHHhcCChh-hhhccccCccceeeeeEEe-ccCCceeeeeccCceeeeccccccccccc
Confidence 4456678999999999 9999999999999 7777777777766556665 48889777788899999999999999999
Q ss_pred cEEeecCCCcEEEEeccCccCCHHHHHHHhCCcccc-ccCCCCCeeeeccccchhHHHHHHHHHH-HHhcCCCCCCCCCC
Q 006585 220 NILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIR-DAFDEPDYALIDTLFSLAEAYLFAQLVD-FMDNNPGKDSKSTD 297 (639)
Q Consensus 220 nlLKlD~~g~I~~a~HG~~~Ls~eEi~~~Yg~~~i~-~~~~~~~~~~ldTlFslpEa~L~A~lVD-~~d~~~~~~~~~~~ 297 (639)
+..+.++++ -.+++ +...+. ..|+-+. .+.=.+.+|+....++..+ .+|.++..+ ..
T Consensus 114 ~~eiyg~~~---------~~~~~-------~~~~~l~t~F~~~e--a~~~aq~vd~~d~~~~~~~~~~dyk~~~~---~v 172 (424)
T KOG2469|consen 114 ISEIYGRKL---------VRLSD-------SRYYLLNTLFSMPE--ADLFAQAVDFLDNGPEYGPVDMDYKPGWK---DV 172 (424)
T ss_pred hhhhccccc---------ccccC-------chhhhhhhhhhchh--HHHHHhhcchhhcCCccCccchhhcchHH---HH
Confidence 999999988 22222 222221 1222110 1111333444443333321 122222211 13
Q ss_pred hHHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHH
Q 006585 298 YVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVM 365 (639)
Q Consensus 298 y~~l~~DVr~Avd~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM 365 (639)
+.++..+..++.-..|..|...+.|..++ +++- .+....-.-+..--+ +.++.||+++-++++.|
T Consensus 173 ~~~~~~~h~~~~lk~~~~~~pek~V~~d~-~~v~-~l~~~r~sGKk~fl~-Tns~~~ytd~~mt~~~~ 237 (424)
T KOG2469|consen 173 RAAGNAVHLYGLLKKKMMGKPERYVVYDG-TIVP-LLSMLRDSGKKTFLH-TNSDWDYTDIFMAFHYG 237 (424)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCceeeecC-cccc-chHHHHhhccceEEe-eccccchhhHHHHHHhC
Confidence 56778888888888899999998887664 4443 333333333233334 78999999999999999
No 86
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=87.81 E-value=0.83 Score=46.49 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=37.7
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhH--HHHHhhccCCCCCCCCCCCCCCcc-CccEEEEcc
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTT--IVMNFLCGSHTLDGGITCNSDWLL-YFDVVITGS 395 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn--~vM~yl~g~~~~~~~~~~~~dWrd-yFDvVIv~A 395 (639)
.-|....+|++|+++|+++.++||+.-.... ..+..+ .+.. +||.||+.+
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~--------------gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL--------------GINADLPEMIISSG 77 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC--------------CCCccccceEEccH
Confidence 3588899999999999999999999876554 223322 2344 899999876
No 87
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=86.99 E-value=1.8 Score=44.90 Aligned_cols=67 Identities=9% Similarity=0.056 Sum_probs=45.4
Q ss_pred hhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCC----hhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 006585 317 TLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSL----WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 392 (639)
Q Consensus 317 ~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~----~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVI 392 (639)
.+.+...++...+..+-|....+|++|++.|.++|+|||.. -..++.++. .+|.+ -.++|++++
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk-~~gip-----------~~~~f~vil 167 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLAD-DFHIP-----------ADNMNPVIF 167 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHH-HcCCC-----------cccceeEEE
Confidence 34444455555566666779999999999999999999953 345555555 33411 145888877
Q ss_pred Ecc
Q 006585 393 TGS 395 (639)
Q Consensus 393 v~A 395 (639)
.+.
T Consensus 168 ~gd 170 (237)
T PRK11009 168 AGD 170 (237)
T ss_pred cCC
Confidence 654
No 88
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=86.80 E-value=1.7 Score=45.00 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=36.9
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCC----ChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNS----LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 394 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS----~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~ 394 (639)
.+-+....+|++++++|.++|++||. .=.+++.++.++ | ..++|++|+..
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-G-------------i~~~f~~i~~~ 167 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-H-------------IPAMNPVIFAG 167 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-C-------------CchheeEEECC
Confidence 33344889999999999999999998 444666666555 3 24689887553
No 89
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=86.63 E-value=1.6 Score=41.36 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=43.4
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 006585 328 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 395 (639)
Q Consensus 328 KYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A 395 (639)
-++..-|.+..+|+.|+ .|.++.++||+.-+|+..++..+ | ..| .+||.|++..
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-~-----------~~~-~~f~~i~~~~ 95 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-D-----------PKK-YFGYRRLFRD 95 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-C-----------cCC-CEeeeEEECc
Confidence 34455799999999998 57899999999999999999876 3 223 5679888754
No 90
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=85.38 E-value=0.6 Score=48.00 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHhcccCCCcEEEEcccccccccccccccCeeEEEeecc
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 498 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 498 (639)
+.+.++. +..+++||||++..||.-+++ .||+|++|-.-
T Consensus 187 ~~~~~~~-~~~~~~~VGD~~~~Di~~a~~-~G~~~v~v~~G 225 (249)
T TIGR01457 187 AVEHLGT-EREETLMVGDNYLTDIRAGID-AGIDTLLVHTG 225 (249)
T ss_pred HHHHcCC-CcccEEEECCCchhhHHHHHH-cCCcEEEEcCC
Confidence 4445565 568999999999999987775 59999999543
No 91
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=83.88 E-value=2.3 Score=41.18 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=39.6
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 325 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 325 npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+...|+.+-|.+..+|++|++. .++.+.||+.-+|++.++.++
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 5677888899999999999855 899999999999999999998
No 92
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=83.80 E-value=6.5 Score=40.89 Aligned_cols=56 Identities=16% Similarity=0.337 Sum_probs=44.3
Q ss_pred ccCCChHHHHHHH--HhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCC
Q 006585 331 NEDRSIVPMLKML--RESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 403 (639)
Q Consensus 331 ~kdp~L~~~L~~L--r~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e 403 (639)
.-+|.++.+++.+ .+.|-.+.+|++|.--|.+.++..- | =+++|+=|+++ |..|.+
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-g-------------l~~~f~~I~TN---pa~~~~ 128 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-G-------------LRDCFSEIFTN---PACFDA 128 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-C-------------CccccceEEeC---CceecC
Confidence 3467788888999 4568999999999999999999865 2 36899988886 456654
No 93
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=81.06 E-value=1.2 Score=43.80 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 338 PMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 338 ~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.-++.|++.|.++.++||.....+..++..+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 4678888999999999999999999988876
No 94
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=80.67 E-value=0.92 Score=48.51 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.6
Q ss_pred CcEEEEcccccccccccccccCeeEEEeec
Q 006585 468 SQVLYVGDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 468 ~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 497 (639)
.++++|||.+.+||.-++. .||.|++|--
T Consensus 264 ~~~~mIGD~~~tDI~ga~~-~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQN-YGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHHh-CCceEEEecc
Confidence 5899999999999997765 6999999963
No 95
>PLN02645 phosphoglycolate phosphatase
Probab=80.17 E-value=1.2 Score=47.50 Aligned_cols=38 Identities=37% Similarity=0.528 Sum_probs=30.5
Q ss_pred HHHHhcccCCCcEEEEcccccccccccccccCeeEEEeec
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 497 (639)
..+.++. +..+++||||.+..||.-++. .||+|++|.-
T Consensus 239 a~~~~~~-~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~~ 276 (311)
T PLN02645 239 LANKFGI-EKSQICMVGDRLDTDILFGQN-GGCKTLLVLS 276 (311)
T ss_pred HHHHcCC-CcccEEEEcCCcHHHHHHHHH-cCCCEEEEcC
Confidence 3444565 578999999999999988875 5999999943
No 96
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=79.11 E-value=3.9 Score=39.52 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=46.7
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 006585 325 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 393 (639)
Q Consensus 325 npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv 393 (639)
+..-||.+-|.+..+|+.|.+. -.+.+.|++.-.|++.+++.+ ..++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-------------dp~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-------------DRGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-------------CcCCCEEeEEEE
Confidence 4567889999999999999987 899999999999999999988 234567776664
No 97
>PTZ00445 p36-lilke protein; Provisional
Probab=78.88 E-value=2.5 Score=43.50 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=92.4
Q ss_pred HHHHHHHHhhccchhHHHHHhCccccccc-CCChHHHHHHHHhcCCeEEEecCCChhh-----------hHHHHHhhccC
Q 006585 304 DVRAAVDLCHRDGTLKQMVAKDPKTYINE-DRSIVPMLKMLRESGRSTFLVTNSLWDY-----------TTIVMNFLCGS 371 (639)
Q Consensus 304 DVr~Avd~vH~~G~lk~~v~~npeKYI~k-dp~L~~~L~~Lr~~GKKlFLiTNS~~dY-----------tn~vM~yl~g~ 371 (639)
|.-.-+-.+|..|...+. ++...++.. .|++..|+++|+++|-++.++|=|+=.- -..+.++++-.
T Consensus 49 D~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~ 126 (219)
T PTZ00445 49 DFDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK 126 (219)
T ss_pred cchhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh
Confidence 333444456877766555 678888877 4889999999999999999999887533 11234444331
Q ss_pred CCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceec
Q 006585 372 HTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQ 451 (639)
Q Consensus 372 ~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYs 451 (639)
. .--|++..|.|-=|.|+.+.. -+.++ |..+ |+ ...+.|
T Consensus 127 s------------~~~~~i~~~~~yyp~~w~~p~--~y~~~----gl~K------Pd----------------p~iK~y- 165 (219)
T PTZ00445 127 S------------KCDFKIKKVYAYYPKFWQEPS--DYRPL----GLDA------PM----------------PLDKSY- 165 (219)
T ss_pred c------------CccceeeeeeeeCCcccCChh--hhhhh----cccC------CC----------------ccchHH-
Confidence 1 345899999999999999841 22222 2111 11 112224
Q ss_pred CCCHHHHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeec
Q 006585 452 GGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 452 gGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 497 (639)
-...+++-.|+ ...++|+|=|.. -.|..++ ..||.|+.+..
T Consensus 166 --Hle~ll~~~gl-~peE~LFIDD~~-~NVeaA~-~lGi~ai~f~~ 206 (219)
T PTZ00445 166 --HLKQVCSDFNV-NPDEILFIDDDM-NNCKNAL-KEGYIALHVTG 206 (219)
T ss_pred --HHHHHHHHcCC-CHHHeEeecCCH-HHHHHHH-HCCCEEEEcCC
Confidence 11334455555 468999997773 4444444 47999998753
No 98
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=78.77 E-value=3.1 Score=37.27 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
-|.-..+|+.||++||+++++||+.-.=....+..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 377889999999999999999999854444455444
No 99
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=77.52 E-value=1.6 Score=44.46 Aligned_cols=38 Identities=34% Similarity=0.541 Sum_probs=28.8
Q ss_pred HHHHHhcccCCCcE-EEEcccccccccccccccCeeEEEee
Q 006585 457 HLHKLLSIESSSQV-LYVGDHIYGDILRSKKVLGWRTMLVV 496 (639)
Q Consensus 457 ~L~~ll~~~~G~~V-LYfGDHIygDIl~sKk~~gWRT~aIV 496 (639)
.+.+.++. ...++ +||||.+..||.-+++ .||+|++|.
T Consensus 196 ~~~~~~~~-~~~~~~~~IGD~~~~Di~~A~~-~G~~~i~v~ 234 (236)
T TIGR01460 196 AALNLLQA-RPERRDVMVGDNLRTDILGAKN-AGFDTLLVL 234 (236)
T ss_pred HHHHHhCC-CCccceEEECCCcHHHHHHHHH-CCCcEEEEe
Confidence 34455565 34555 9999999999987774 699999984
No 100
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=77.49 E-value=2.3 Score=44.19 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCC
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGF 400 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~F 400 (639)
.|....+|++|++.|.+++++||.+..++..++.++-- +..+||.|+....-..|
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~-------------~~~~f~~i~~~~~~~~~ 243 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ-------------TDIWFDDLIGRPPDMHF 243 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH-------------cCCchhhhhCCcchhhh
Confidence 47788999999999999999999999999999999822 12379988776633333
No 101
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=77.29 E-value=2.6 Score=42.60 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=26.6
Q ss_pred ccCCCCcEEEeeccccccccCcchhHHHHH-HHHHHHHHHhcCCChh
Q 006585 152 LNMKNIVAVGFDMDYTLAQYKPETFESLAY-DGTVRKLVYDLGYPEE 197 (639)
Q Consensus 152 L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Y-e~~~~~LV~~~gYP~e 197 (639)
++...|++|-||||+||+... +....+ +...+.+.+..|.|.+
T Consensus 5 ~~~~~~k~vIFDlDGTL~d~~---~~~~~~~~~~~~~~~~~~G~~~~ 48 (224)
T PRK14988 5 IAWQDVDTVLLDMDGTLLDLA---FDNYFWQKLVPETLGAQRGISPQ 48 (224)
T ss_pred CCcccCCEEEEcCCCCccchh---hhchHHHhhHHHHHHHHhCcCHH
Confidence 445678999999999999942 111122 2234455556777744
No 102
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=75.47 E-value=5.4 Score=46.09 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=31.2
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEecCCCh
Q 006585 323 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLW 358 (639)
Q Consensus 323 ~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~ 358 (639)
..+|+.+...-|.++..|++|+++|.+++++||..-
T Consensus 189 ~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 189 PKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 356777776779999999999999999999999766
No 103
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=75.35 E-value=4.8 Score=37.98 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=34.7
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
...|.+..+|+.++++|.++.++|+|.-.|+..++..+
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 34688999999999999999999999999999999876
No 104
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=75.27 E-value=3.3 Score=40.69 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=25.1
Q ss_pred CcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 157 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
+++|-||||+||+.....- . -++..+.+.+. +.|+|
T Consensus 2 ~~~viFDlDGTL~ds~~~~-~-~~~~~~~~~~~-~~g~~ 37 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLA-E-KARRNAIEVLI-EAGLN 37 (221)
T ss_pred ceEEEEeCCCCCcCCCCcc-C-HHHHHHHHHHH-HCCCc
Confidence 7899999999999987532 2 34555566665 35665
No 105
>PRK10444 UMP phosphatase; Provisional
Probab=74.57 E-value=2.2 Score=44.13 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=30.9
Q ss_pred HHHHHhcccCCCcEEEEcccccccccccccccCeeEEEeec
Q 006585 457 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 457 ~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 497 (639)
...+.++. ...+++||||.+..||.-++ ..|++|++|--
T Consensus 182 ~~~~~~~~-~~~~~v~IGD~~~tDi~~A~-~~G~~~vlV~~ 220 (248)
T PRK10444 182 AALNKMQA-HSEETVIVGDNLRTDILAGF-QAGLETILVLS 220 (248)
T ss_pred HHHHHcCC-CcccEEEECCCcHHHHHHHH-HcCCCEEEECC
Confidence 34455565 57899999999999988776 45999999953
No 106
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=73.93 E-value=4.6 Score=38.86 Aligned_cols=38 Identities=24% Similarity=0.125 Sum_probs=22.7
Q ss_pred cEEEeeccccccccCcchhHHHHHH-HHHHHHHHhcCCChh
Q 006585 158 VAVGFDMDYTLAQYKPETFESLAYD-GTVRKLVYDLGYPEE 197 (639)
Q Consensus 158 ~~iGFDmDYTLa~Y~~~~~e~L~Ye-~~~~~LV~~~gYP~e 197 (639)
++|-||||+||+--.. .+.. +++ .+.+++...+|.|..
T Consensus 1 ~~viFDlDGTL~ds~~-~~~~-~~~~~~~~~~~~~~g~~~~ 39 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSA-GIFL-QIDRNITEFVAARLKLSEE 39 (184)
T ss_pred CeEEEeCCCCCCCCcc-cHHH-HHHHHHHHHHHHHcCcCHH
Confidence 4789999999995432 2222 333 333445556788643
No 107
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=72.57 E-value=7.4 Score=41.77 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=54.7
Q ss_pred hCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCC
Q 006585 324 KDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 403 (639)
Q Consensus 324 ~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e 403 (639)
.+-+.=-.++|.+..-|.+||+.|..|.|=+-..-+++...|+-+ + = .+|||+||++++|=+-...
T Consensus 135 td~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~-~-----------L--~~~Fd~ii~~G~~~~~~~~ 200 (297)
T PF05152_consen 135 TDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL-K-----------L--EGYFDIIICGGNKAGEYNS 200 (297)
T ss_pred ccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh-C-----------C--ccccEEEEeCCccCCcCCc
Confidence 333444468899999999999999999999999999999999987 2 1 3799999999998876553
No 108
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=71.96 E-value=3.9 Score=41.47 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCCCcEEEeeccccccccCcchhHHHHHHHHHHHH
Q 006585 154 MKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKL 188 (639)
Q Consensus 154 L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~L 188 (639)
|.+|++|-||||+||+--.+ .-.-+++.+.+.+
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~--~~~~a~~~~~~~~ 39 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRP--VILRTEQEALAFV 39 (238)
T ss_pred CCCceeEEEcCcccccCChH--HHHHHHHHHHHHH
Confidence 45799999999999998653 2223445555544
No 109
>PRK11587 putative phosphatase; Provisional
Probab=71.70 E-value=3.7 Score=40.80 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=23.7
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 196 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ 196 (639)
.|++|-||||+||+--. ....+...+ ..+++|+|.
T Consensus 2 ~~k~viFDlDGTL~Ds~-----~~~~~a~~~-~~~~~g~~~ 36 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSL-----PAVERAWSN-WADRHGIAP 36 (218)
T ss_pred CCCEEEEcCCCCcCcCH-----HHHHHHHHH-HHHHcCCCH
Confidence 48999999999999743 233333333 335689874
No 110
>PRK08238 hypothetical protein; Validated
Probab=69.12 E-value=8 Score=44.13 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.|....+|+++|++|.++.|+|||+-.+++.+++++
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l 109 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL 109 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence 367889999999999999999999999999999987
No 111
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.58 E-value=19 Score=41.10 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=50.1
Q ss_pred ecccHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006585 496 VPELEREVELL-WELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 574 (639)
Q Consensus 496 VpELe~Ei~i~-~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~ 574 (639)
+.|++.|++.+ .+.+.+.+|-.+|++....|+.+++. .+ +.+++++.++.++++.++++++..+.++++.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~---av------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ---AV------QSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777644 34456667777777766666665542 11 1234556677788888888888888888877
Q ss_pred Hhhhcc
Q 006585 575 CHQKFH 580 (639)
Q Consensus 575 ~~~~Fn 580 (639)
+....+
T Consensus 139 l~~~~~ 144 (472)
T TIGR03752 139 LAGVLT 144 (472)
T ss_pred Hhhccc
Confidence 755444
No 112
>PLN02954 phosphoserine phosphatase
Probab=65.03 E-value=5.9 Score=39.17 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.3
Q ss_pred CcEEEEcccccccccccccccCeeEEE
Q 006585 468 SQVLYVGDHIYGDILRSKKVLGWRTML 494 (639)
Q Consensus 468 ~~VLYfGDHIygDIl~sKk~~gWRT~a 494 (639)
.+++||||++. |+.. .+..|...++
T Consensus 170 ~~~i~iGDs~~-Di~a-a~~~~~~~~~ 194 (224)
T PLN02954 170 KTMVMIGDGAT-DLEA-RKPGGADLFI 194 (224)
T ss_pred CceEEEeCCHH-HHHh-hhcCCCCEEE
Confidence 68999999988 9777 5555555444
No 113
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=64.74 E-value=8.2 Score=39.88 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=28.4
Q ss_pred ccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 006585 152 LNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 196 (639)
Q Consensus 152 L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ 196 (639)
|+|++++.|-+|||+||..=+. .......+. +++|. +.|.+-
T Consensus 2 ~~~~~~~lI~~DlDGTLL~~~~-~i~~~~~~a-i~~l~-~~Gi~~ 43 (271)
T PRK03669 2 LSLQDPLLIFTDLDGTLLDSHT-YDWQPAAPW-LTRLR-EAQVPV 43 (271)
T ss_pred CCcCCCeEEEEeCccCCcCCCC-cCcHHHHHH-HHHHH-HcCCeE
Confidence 6899999999999999996432 221223333 56675 467764
No 114
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=64.59 E-value=6.1 Score=40.42 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 154 MKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 154 L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
++.|++|-||||+||+.-. ..+++...+.+ +++|++
T Consensus 19 ~~~~k~viFDlDGTLiDs~-----~~~~~a~~~~~-~~~g~~ 54 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSD-----PLHYYAFREML-QEINFN 54 (248)
T ss_pred cCccCEEEEcCCCccCcCH-----HHHHHHHHHHH-HHhccc
Confidence 4568999999999999743 23344433333 456654
No 115
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=64.34 E-value=5.8 Score=38.59 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=32.0
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
..|.+..+|..|+++ .++.++||+.-.+++.++..+
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 358888999999998 799999999999999988875
No 116
>PLN02645 phosphoglycolate phosphatase
Probab=64.08 E-value=9.5 Score=40.61 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=34.3
Q ss_pred ccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 314 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 314 ~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.||+|+.. .. .-|.....|++||++||+++++||....-...+.+.+
T Consensus 35 ~DGtl~~~------~~--~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 35 CDGVIWKG------DK--LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CcCCeEeC------Cc--cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 46887753 11 2377799999999999999999998755555555444
No 117
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=63.82 E-value=6.5 Score=40.14 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=25.8
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChh
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEE 197 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~e 197 (639)
.++.+-||||+||+..+.. ...-. ..++++|. +.|.+--
T Consensus 2 ~~kli~~DlDGTLl~~~~~-i~~~~-~~al~~~~-~~g~~v~ 40 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-ISPET-KEALARLR-EKGVKVV 40 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-cCHHH-HHHHHHHH-HCCCEEE
Confidence 5789999999999999975 23222 23334554 4666643
No 118
>PRK09449 dUMP phosphatase; Provisional
Probab=63.63 E-value=6.4 Score=38.95 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.7
Q ss_pred CCcEEEeeccccccccC
Q 006585 156 NIVAVGFDMDYTLAQYK 172 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~ 172 (639)
.|++|-||||+||+.+.
T Consensus 2 ~~k~iiFDlDGTLid~~ 18 (224)
T PRK09449 2 KYDWILFDADETLFHFD 18 (224)
T ss_pred CccEEEEcCCCchhcch
Confidence 48999999999999753
No 119
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=62.92 E-value=6.6 Score=42.29 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHhcC-CeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 006585 333 DRSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 398 (639)
Q Consensus 333 dp~L~~~L~~Lr~~G-KKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP 398 (639)
+|.|..+++.+|+.| +++||||||.- ..|..=+ +.+|+|.+.=.-|
T Consensus 94 y~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L-----------------~~~dql~~sLdA~ 140 (296)
T COG0731 94 YPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL-----------------KLPDQLYVSLDAP 140 (296)
T ss_pred ccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh-----------------ccCCEEEEEeccC
Confidence 488999999999999 79999999988 3333333 2678887765544
No 120
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=61.38 E-value=8.6 Score=40.50 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=25.1
Q ss_pred CCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 155 KNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 155 ~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
+.+++|-||||+||+.... .+.++...+.+ +++|+|
T Consensus 38 ~~~k~VIFDlDGTLvDS~~----~~~~~a~~~~l-~~~G~~ 73 (286)
T PLN02779 38 ALPEALLFDCDGVLVETER----DGHRVAFNDAF-KEFGLR 73 (286)
T ss_pred cCCcEEEEeCceeEEcccc----HHHHHHHHHHH-HHcCCC
Confidence 3578999999999998541 34455555555 468985
No 121
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=60.72 E-value=8.4 Score=38.14 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=25.3
Q ss_pred CcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCChh
Q 006585 157 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPEE 197 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~e 197 (639)
|++|-||||+||..-. ..+..-..+. +++|. +.|++--
T Consensus 1 ik~v~~DlDGTLl~~~-~~i~~~~~~~-i~~l~-~~g~~~~ 38 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPN-RMISERAIEA-IRKAE-KKGIPVS 38 (215)
T ss_pred CcEEEEecCCCcCCCC-cccCHHHHHH-HHHHH-HCCCEEE
Confidence 5789999999999543 3444445444 66675 4777643
No 122
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.68 E-value=60 Score=33.83 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 006585 550 MCTRMDDLEYQRDKARLSHQEAQRE 574 (639)
Q Consensus 550 ~~~~l~~l~~er~~lr~~~~~~~~~ 574 (639)
....+..+..+...++..+.++.++
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444
No 123
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=59.04 E-value=23 Score=34.41 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=12.8
Q ss_pred CCCcEEEEccccccccc
Q 006585 466 SSSQVLYVGDHIYGDIL 482 (639)
Q Consensus 466 ~G~~VLYfGDHIygDIl 482 (639)
.+.+++||||.. .|+.
T Consensus 143 ~~~~~v~iGDs~-~D~~ 158 (205)
T PRK13582 143 LGYRVIAAGDSY-NDTT 158 (205)
T ss_pred hCCeEEEEeCCH-HHHH
Confidence 467899999996 7763
No 124
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=58.47 E-value=10 Score=35.98 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=14.2
Q ss_pred CcEEEeeccccccccC
Q 006585 157 IVAVGFDMDYTLAQYK 172 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~ 172 (639)
|++|=||||+||+-..
T Consensus 1 ~~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTA 16 (185)
T ss_pred CCeEEEcCCCcccCCh
Confidence 5789999999999875
No 125
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=58.20 E-value=9.1 Score=37.10 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.8
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEecCC
Q 006585 323 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNS 356 (639)
Q Consensus 323 ~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS 356 (639)
.++|+.++.-.|.++..|++|.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3578888888889999999999999999999995
No 126
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=57.33 E-value=9.8 Score=37.00 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=20.5
Q ss_pred cEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 158 VAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 158 ~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
++|-||||+||+.-... ...++..+ .++.|.+
T Consensus 1 k~viFDlDGTL~d~~~~--~~~a~~~~----~~~~g~~ 32 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP--VGEVYCEI----ARKYGVE 32 (203)
T ss_pred CeEEEecCCceeeeCCC--HHHHHHHH----HHHhCCC
Confidence 47899999999986532 22244333 3457776
No 127
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=57.32 E-value=8.9 Score=40.29 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=27.0
Q ss_pred CceEEeCcccCCCCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 144 KQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 144 ~~VF~NR~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
+.||--+.=+ .++++-||||+||+.=. ..+.. +.+...+++|++
T Consensus 51 ~~~~~~~~~~--~~k~vIFDlDGTLiDS~-----~~~~~-a~~~~~~~~G~~ 94 (273)
T PRK13225 51 PQVFPQSYPQ--TLQAIIFDFDGTLVDSL-----PTVVA-IANAHAPDFGYD 94 (273)
T ss_pred hhhhhhhhhh--hcCEEEECCcCccccCH-----HHHHH-HHHHHHHHCCCC
Confidence 4455533333 48899999999999832 22333 344444668875
No 128
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=55.65 E-value=9.3 Score=36.09 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.1
Q ss_pred cEEEeeccccccccC
Q 006585 158 VAVGFDMDYTLAQYK 172 (639)
Q Consensus 158 ~~iGFDmDYTLa~Y~ 172 (639)
++|.||||+||+..+
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 689999999998764
No 129
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=54.08 E-value=10 Score=37.37 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHhcccCCCcEEEEcccccccccccccccCeeEE
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 493 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~ 493 (639)
+++.++. ...+++||||+ .+|+...+. .|+..+
T Consensus 160 ~~~~~~~-~~~~~i~iGDs-~~Di~aa~~-ag~~i~ 192 (219)
T TIGR00338 160 LLRKEGI-SPENTVAVGDG-ANDLSMIKA-AGLGIA 192 (219)
T ss_pred HHHHcCC-CHHHEEEEECC-HHHHHHHHh-CCCeEE
Confidence 3344454 45799999999 599866654 488653
No 130
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=53.70 E-value=12 Score=37.59 Aligned_cols=34 Identities=26% Similarity=0.074 Sum_probs=23.3
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
-+++|-||||+||+--. .++++...+.+ +++|+|
T Consensus 11 ~~k~viFD~DGTL~Ds~-----~~~~~a~~~~~-~~~g~~ 44 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSA-----PDMLATVNAML-AARGRA 44 (229)
T ss_pred cCCEEEEcCcCccccCH-----HHHHHHHHHHH-HHCCCC
Confidence 35799999999999853 23444444444 568887
No 131
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=52.67 E-value=8.6 Score=37.63 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=15.3
Q ss_pred CcEEEeeccccccccCc
Q 006585 157 IVAVGFDMDYTLAQYKP 173 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~~ 173 (639)
|++|=||||+||+.+..
T Consensus 1 ~k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQA 17 (224)
T ss_pred CCEEEEcCcCcccccch
Confidence 67899999999999875
No 132
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=51.76 E-value=7.8 Score=37.57 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=12.5
Q ss_pred cEEEeeccccccccCcc
Q 006585 158 VAVGFDMDYTLAQYKPE 174 (639)
Q Consensus 158 ~~iGFDmDYTLa~Y~~~ 174 (639)
++.+||+|+||+.-++.
T Consensus 1 Kia~fD~DgTLi~~~s~ 17 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG 17 (159)
T ss_dssp SEEEE-SCTTTEE-STS
T ss_pred CEEEEeCCCCccCCCCC
Confidence 47899999999998753
No 133
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=51.64 E-value=17 Score=36.98 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 455 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 455 ~~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
+..+++.+|+ ...+|++|||.. .|+--.+. .|+
T Consensus 204 l~~l~~~~gi-~~~e~i~~GD~~-NDi~m~~~-ag~ 236 (272)
T PRK10530 204 LTQWVEAQGW-SMKNVVAFGDNF-NDISMLEA-AGL 236 (272)
T ss_pred HHHHHHHcCC-CHHHeEEeCCCh-hhHHHHHh-cCc
Confidence 4567777887 578999999995 77654443 353
No 134
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.75 E-value=81 Score=32.32 Aligned_cols=15 Identities=40% Similarity=0.590 Sum_probs=11.4
Q ss_pred EeecccHHHHHHHHH
Q 006585 494 LVVPELEREVELLWE 508 (639)
Q Consensus 494 aIVpELe~Ei~i~~~ 508 (639)
..+|+|+.|++.+..
T Consensus 93 ~rlp~le~el~~l~~ 107 (206)
T PRK10884 93 TRVPDLENQVKTLTD 107 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457999999987753
No 135
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.75 E-value=98 Score=29.21 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=26.2
Q ss_pred eEEEeecccHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 006585 491 RTMLVVPELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHHLK 534 (639)
Q Consensus 491 RT~aIVpELe~Ei~i~~~~-~~~~~~L~~L~~~~~~led~~~~l~ 534 (639)
-++.+|+-|..+|+-.... ..++.++..|...|+.+.+.+-.+.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555565555544322 2355678888888888777665544
No 136
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=50.56 E-value=20 Score=37.19 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
-|....+|++||++|++++++||....=...+..++
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 568889999999999999999997766444444444
No 137
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=49.74 E-value=15 Score=38.40 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
=|++|-||||+||+.-. ..+. .+.+.+..+.|.+
T Consensus 12 ~~k~viFDlDGTL~Ds~-----~~~~-~a~~~~~~~~g~~ 45 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSV-----PDLA-AAVDRMLLELGRP 45 (272)
T ss_pred cCCEEEEcCCCccccCH-----HHHH-HHHHHHHHHcCCC
Confidence 46799999999998743 2233 3333445567776
No 138
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.78 E-value=1.4e+02 Score=27.12 Aligned_cols=81 Identities=17% Similarity=0.346 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-C----C--------------CCh-------HHHHHh
Q 006585 497 PELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKS-E----G--------------IDV-------DEQRKM 550 (639)
Q Consensus 497 pELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~-~----~--------------~~~-------~~~~~~ 550 (639)
|+++.++.-... ++.+++.+...+..|+..++.....+.- + + .-+ +..+.+
T Consensus 3 ~~~q~~~~~~q~---~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 3 PQVQNQLAQLQQ---LQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETL 79 (110)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHH
Confidence 667776666554 5566666666666666655543332220 0 0 000 111335
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006585 551 CTRMDDLEYQRDKARLSHQEAQRECHQKFH 580 (639)
Q Consensus 551 ~~~l~~l~~er~~lr~~~~~~~~~~~~~Fn 580 (639)
...++.+.+..+.++..+.+++..+.++++
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777777777777777666554
No 139
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=48.53 E-value=20 Score=39.95 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=22.9
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 196 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ 196 (639)
.+++|-|||||||+.=. . .++..+.+.+.++.|+|.
T Consensus 130 ~~~~VIFDlDGTLIDS~----~-~i~~~a~~~l~~e~G~~~ 165 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDN----P-DLENQAWLTLAQEEGKSP 165 (381)
T ss_pred CCCEEEEcCcCcceeCH----H-HHHHHHHHHHHHHcCCCC
Confidence 56889999999999621 1 223333334555688863
No 140
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=48.43 E-value=25 Score=36.18 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.4
Q ss_pred CChHHHHHHHHhcCCeEEEecC
Q 006585 334 RSIVPMLKMLRESGRSTFLVTN 355 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTN 355 (639)
|.-..+|++|+++|++++++||
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC
Confidence 5678999999999999999998
No 141
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=48.15 E-value=16 Score=34.71 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 159 AVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 159 ~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
+|=||+|+||+.... ..+.... .+.+++|+|
T Consensus 1 ~iiFD~DGTL~ds~~-----~~~~~~~-~~~~~~g~~ 31 (185)
T TIGR01990 1 AVIFDLDGVITDTAE-----YHYLAWK-ALADELGIP 31 (185)
T ss_pred CeEEcCCCccccChH-----HHHHHHH-HHHHHcCCC
Confidence 467999999997653 3333333 345567766
No 142
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=48.15 E-value=1.2e+02 Score=32.41 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=35.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+...|....+|+.|+++|-++.++|++.-+++..++.-+
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l 158 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA 158 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence 556899999999999999999999999999999998874
No 143
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=47.36 E-value=10 Score=34.40 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=11.4
Q ss_pred cEEEeeccccccc
Q 006585 158 VAVGFDMDYTLAQ 170 (639)
Q Consensus 158 ~~iGFDmDYTLa~ 170 (639)
+++-||||+||..
T Consensus 1 k~~~~D~dgtL~~ 13 (132)
T TIGR01662 1 KGVVLDLDGTLTD 13 (132)
T ss_pred CEEEEeCCCceec
Confidence 4788999999994
No 144
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=46.62 E-value=42 Score=34.01 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=38.2
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCC
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFH 402 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~ 402 (639)
+.+..+|+.+|++|+|.-|.=|-..... .-..|-++.|.|.+-+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~------------------~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVE------------------ELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GG------------------GGTTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCch------------------HHHHHhhhcCEEEEEEecCCCCc
Confidence 5567899999999999999877654332 12567789999999999999654
No 145
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=46.43 E-value=1.3e+02 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=23.9
Q ss_pred cCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006585 539 SEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECH 576 (639)
Q Consensus 539 ~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~ 576 (639)
+.+.+++++. +.++|+..|+.+|...++++..+.
T Consensus 136 y~hMSeeER~----EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 136 YRHMSEEERE----EAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred HhcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666653 456788888999988888765554
No 146
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=45.70 E-value=26 Score=33.89 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.|....++++++++|.+++++|.++|.-.+....|+
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l 64 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL 64 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH
Confidence 477889999999999999999999999988777777
No 147
>PTZ00174 phosphomannomutase; Provisional
Probab=45.01 E-value=25 Score=35.93 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
+++.|.||||+||..-+.. +..-. ..++++|.+ .|..
T Consensus 4 ~~klia~DlDGTLL~~~~~-is~~~-~~ai~~l~~-~Gi~ 40 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-ITQEM-KDTLAKLKS-KGFK 40 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-CCHHH-HHHHHHHHH-CCCE
Confidence 4899999999999976643 33333 345566764 5653
No 148
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=44.79 E-value=19 Score=35.08 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=18.4
Q ss_pred EEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 160 VGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 160 iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
|-||||+||+.- +...++ +.+...++.|+|
T Consensus 1 viFD~DGTL~Ds-----~~~~~~-~~~~~~~~~~~~ 30 (213)
T TIGR01449 1 VLFDLDGTLVDS-----APDIAA-AVNMALAALGLP 30 (213)
T ss_pred CeecCCCccccC-----HHHHHH-HHHHHHHHCCCC
Confidence 359999999952 223344 334444567876
No 149
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=44.73 E-value=22 Score=35.15 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=0.0
Q ss_pred CcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 157 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
|++|-||||+||+.-...--+... .++++|.+ .|.+
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~--~al~~l~~-~G~~ 38 (230)
T PRK01158 3 IKAIAIDIDGTITDKDRRLSLKAV--EAIRKAEK-LGIP 38 (230)
T ss_pred eeEEEEecCCCcCCCCCccCHHHH--HHHHHHHH-CCCE
No 150
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=44.70 E-value=21 Score=36.34 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
.|+.|.||||+||...+..--+.-. .++++|.+ .|+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~--~ai~~l~~-~G~~ 38 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDHTISPAVK--QAIAAARA-KGVN 38 (270)
T ss_pred ceEEEEEecCCcCcCCCCccCHHHH--HHHHHHHH-CCCE
No 151
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=44.18 E-value=25 Score=33.45 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=32.0
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
|+...+|+.++++|.++++||.|+-.++..++.++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 77779999999999999999999999999998844
No 152
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=43.70 E-value=34 Score=34.42 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.4
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
...|....+|+.+|+.| ++.++||+.-.++..++..+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 34788999999999987 99999999999999999876
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=43.66 E-value=1.6e+02 Score=30.00 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006585 515 KLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSH 568 (639)
Q Consensus 515 ~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~ 568 (639)
.|+.+......++..+..|.|. .+.+.+.+.+++.+|+++...-
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e----------~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWE----------HEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455666666662 2345566667777777766443
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.02 E-value=1.7e+02 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=15.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006585 549 KMCTRMDDLEYQRDKARLSHQEAQREC 575 (639)
Q Consensus 549 ~~~~~l~~l~~er~~lr~~~~~~~~~~ 575 (639)
.++..+.+.+.++.+.+..+..+.++|
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665555544444
No 155
>PRK10444 UMP phosphatase; Provisional
Probab=40.95 E-value=34 Score=35.50 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
-|....+|++|++.||+++++||....=.....+.+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 578889999999999999999999986666666655
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.94 E-value=1.1e+02 Score=33.13 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=24.9
Q ss_pred cccHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006585 497 PELEREVELLWE-LRDLRKKLHLLRNERDLIEDQIHHLKW 535 (639)
Q Consensus 497 pELe~Ei~i~~~-~~~~~~~L~~L~~~~~~led~~~~l~~ 535 (639)
.+++.|++.+.. .....++|..|+..++++++++..+..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666664433 345667777787777777777665543
No 157
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.27 E-value=29 Score=35.84 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=0.0
Q ss_pred CcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 157 IVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
|++|-+|||+||..-.....+. -..++++|.+ .|++
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~--~~~ai~~l~~-~Gi~ 39 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEP--AKPALKALKE-KGIP 39 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHH--HHHHHHHHHH-CCCE
No 158
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=40.23 E-value=15 Score=35.67 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=14.6
Q ss_pred CcEEEeeccccccccCc
Q 006585 157 IVAVGFDMDYTLAQYKP 173 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~~ 173 (639)
|++|-||||+||+-+.+
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 57899999999998763
No 159
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=39.40 E-value=15 Score=35.99 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=19.9
Q ss_pred ccCCChHHHHHHHHhcCCeEEEecCCChh
Q 006585 331 NEDRSIVPMLKMLRESGRSTFLVTNSLWD 359 (639)
Q Consensus 331 ~kdp~L~~~L~~Lr~~GKKlFLiTNS~~d 359 (639)
.+-|.....|++|++.|-.+++||.++..
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 34466778888888888677777777766
No 160
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.70 E-value=44 Score=38.09 Aligned_cols=41 Identities=5% Similarity=-0.005 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCC
Q 006585 551 CTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGY 591 (639)
Q Consensus 551 ~~~l~~l~~er~~lr~~~~~~~~~~~~~Fn~~~GSlFRtG~ 591 (639)
.+.+.++..+..+|+........++++.|+-.---+|+++-
T Consensus 402 ~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sak 442 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAK 442 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 35667777778888888777888888889888888898873
No 161
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=38.20 E-value=17 Score=35.65 Aligned_cols=16 Identities=38% Similarity=0.274 Sum_probs=14.3
Q ss_pred CcEEEeeccccccccC
Q 006585 157 IVAVGFDMDYTLAQYK 172 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y~ 172 (639)
|++|-||||+||+.+.
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 6789999999999974
No 162
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=37.52 E-value=46 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=32.6
Q ss_pred cCCChHHHHH-HHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 332 EDRSIVPMLK-MLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 332 kdp~L~~~L~-~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
.-|.....|+ .+++.|.++.++|||.-.|+..++.+.
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 4688899995 788899999999999999999999765
No 163
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=37.34 E-value=40 Score=35.06 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=30.2
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 370 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g 370 (639)
|....+++.+++.|-++|++||-.-..-+.++..|..
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~ 159 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN 159 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH
Confidence 4455688889999999999999998887778877743
No 164
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=37.25 E-value=18 Score=34.79 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHhcccCCCcEEEEcccccccccccccccCeeEEE
Q 006585 457 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTML 494 (639)
Q Consensus 457 ~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gWRT~a 494 (639)
.+.+.++. ...+++||||++ .|+-..+. .|+..++
T Consensus 154 ~~~~~~~~-~~~~~i~iGDs~-~D~~~a~~-ag~~~a~ 188 (201)
T TIGR01491 154 RLKRELNP-SLTETVAVGDSK-NDLPMFEV-ADISISL 188 (201)
T ss_pred HHHHHhCC-CHHHEEEEcCCH-hHHHHHHh-cCCeEEE
Confidence 34455565 568999999994 69766654 5885544
No 165
>PLN02423 phosphomannomutase
Probab=37.13 E-value=35 Score=35.14 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=20.8
Q ss_pred CCCcEEE-eeccccccccCcchhHHHHHHHHHHHHHH
Q 006585 155 KNIVAVG-FDMDYTLAQYKPETFESLAYDGTVRKLVY 190 (639)
Q Consensus 155 ~~I~~iG-FDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~ 190 (639)
++.+++. ||||+||+.-+- .+..-. ..++++|.+
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~-~i~~~~-~~ai~~l~~ 38 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRK-EATPEM-LEFMKELRK 38 (245)
T ss_pred CccceEEEEeccCCCcCCCC-cCCHHH-HHHHHHHHh
Confidence 4566666 999999997553 333333 334555653
No 166
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=36.09 E-value=21 Score=38.66 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=31.0
Q ss_pred CcccCCCCcEEEeeccccccccCcch-h-HHHHHHHHHHHHHHhcCCChhhcC
Q 006585 150 RSLNMKNIVAVGFDMDYTLAQYKPET-F-ESLAYDGTVRKLVYDLGYPEELLE 200 (639)
Q Consensus 150 R~L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~Ye~~~~~LV~~~gYP~ell~ 200 (639)
.++-..-.++|.||||+||..=..+. . ..-+.+ +++.|- +.|++-.|..
T Consensus 119 ~~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~E-aL~~Lk-ekGikLaIaT 169 (301)
T TIGR01684 119 PSKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYD-SLTELK-KRGCILVLWS 169 (301)
T ss_pred cccccccceEEEEecCCCCcCCCCccccCCHHHHH-HHHHHH-HCCCEEEEEE
Confidence 34455667899999999998865320 0 122344 456675 5888866653
No 167
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=34.80 E-value=76 Score=29.99 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=47.9
Q ss_pred ccchhHHHHHhCccccc--ccCCChHHHHHHHHhcCCeEEEecCCChhhhH------------HHHHhhccCCCCCCCCC
Q 006585 314 RDGTLKQMVAKDPKTYI--NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTT------------IVMNFLCGSHTLDGGIT 379 (639)
Q Consensus 314 ~~G~lk~~v~~npeKYI--~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn------------~vM~yl~g~~~~~~~~~ 379 (639)
.||++- ..+.+.|. ...+.....|++|++.|-+++++|.-+..... .+..++
T Consensus 8 iDGTL~---~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL----------- 73 (126)
T TIGR01689 8 LDNTIT---LTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL----------- 73 (126)
T ss_pred CCCCcc---cCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-----------
Confidence 467772 33444564 34577888899999999999999999998876 777777
Q ss_pred CCCCCccCccEEEEcc
Q 006585 380 CNSDWLLYFDVVITGS 395 (639)
Q Consensus 380 ~~~dWrdyFDvVIv~A 395 (639)
..|.=-||=|++..
T Consensus 74 --~k~~ipYd~l~~~k 87 (126)
T TIGR01689 74 --NQHNVPYDEIYVGK 87 (126)
T ss_pred --HHcCCCCceEEeCC
Confidence 33455568887754
No 168
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.62 E-value=59 Score=33.04 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=35.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 330 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 330 I~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+.--|....++..+|++|-++++||.|.-.|++.++..+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 445688889999999999999999999999999999987
No 169
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=34.29 E-value=36 Score=34.62 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 159 AVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 159 ~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
+|-||||+||.. ....... -..++++|.+ .|.|
T Consensus 1 li~~DlDGTLl~-~~~~~~~--~~~ai~~l~~-~G~~ 33 (225)
T TIGR02461 1 VIFTDLDGTLLP-PGYEPGP--AREALEELKD-LGFP 33 (225)
T ss_pred CEEEeCCCCCcC-CCCCchH--HHHHHHHHHH-CCCE
No 170
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.10 E-value=21 Score=34.36 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHhcccCCCcEEEEcccccccccccc
Q 006585 456 GHLHKLLSIESSSQVLYVGDHIYGDILRSK 485 (639)
Q Consensus 456 ~~L~~ll~~~~G~~VLYfGDHIygDIl~sK 485 (639)
..+.+.++. .+.+|+||||.+ .|+...|
T Consensus 185 ~~~i~~l~~-~~~~v~~vGDg~-nD~~al~ 212 (215)
T PF00702_consen 185 LRIIKELQV-KPGEVAMVGDGV-NDAPALK 212 (215)
T ss_dssp HHHHHHHTC-TGGGEEEEESSG-GHHHHHH
T ss_pred HHHHHHHhc-CCCEEEEEccCH-HHHHHHH
Confidence 456777886 567999999999 9976544
No 171
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=34.06 E-value=37 Score=33.17 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=10.1
Q ss_pred EEeecccccccc
Q 006585 160 VGFDMDYTLAQY 171 (639)
Q Consensus 160 iGFDmDYTLa~Y 171 (639)
|-||||+||+--
T Consensus 1 iiFDlDGTL~Ds 12 (205)
T TIGR01454 1 VVFDLDGVLVDS 12 (205)
T ss_pred CeecCcCccccC
Confidence 469999999874
No 172
>PRK10976 putative hydrolase; Provisional
Probab=33.93 E-value=21 Score=36.44 Aligned_cols=13 Identities=38% Similarity=0.322 Sum_probs=0.0
Q ss_pred CcEEEeecccccc
Q 006585 157 IVAVGFDMDYTLA 169 (639)
Q Consensus 157 I~~iGFDmDYTLa 169 (639)
|+.|.+|||+||.
T Consensus 2 ikli~~DlDGTLl 14 (266)
T PRK10976 2 YQVVASDLDGTLL 14 (266)
T ss_pred ceEEEEeCCCCCc
No 173
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=33.63 E-value=21 Score=37.15 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.2
Q ss_pred EEEeeccccccccC
Q 006585 159 AVGFDMDYTLAQYK 172 (639)
Q Consensus 159 ~iGFDmDYTLa~Y~ 172 (639)
+|+||||+||+.=.
T Consensus 65 aViFDlDgTLlDSs 78 (237)
T TIGR01672 65 AVSFDIDDTVLFSS 78 (237)
T ss_pred EEEEeCCCccccCc
Confidence 89999999998743
No 174
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=33.09 E-value=46 Score=32.91 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.5
Q ss_pred HHHHHHHhcccCCCcEEEEcccccccc
Q 006585 455 VGHLHKLLSIESSSQVLYVGDHIYGDI 481 (639)
Q Consensus 455 ~~~L~~ll~~~~G~~VLYfGDHIygDI 481 (639)
...+++.+|+ ...+|++|||..- |+
T Consensus 184 l~~l~~~lgi-~~~~vi~~GD~~N-Di 208 (221)
T TIGR02463 184 ANWLKATYNQ-PDVKTLGLGDGPN-DL 208 (221)
T ss_pred HHHHHHHhCC-CCCcEEEECCCHH-HH
Confidence 5778888998 6789999999865 54
No 175
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=33.06 E-value=36 Score=36.87 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=41.5
Q ss_pred ceecCCCHHHHHHHhccc---CCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHH
Q 006585 448 RIFQGGSVGHLHKLLSIE---SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLW 507 (639)
Q Consensus 448 ~VYsgGn~~~L~~ll~~~---~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~ 507 (639)
.++.|==...+.+.+... .-++.|.|||-+=+||+=.+ .+|..|.+|.-=...|-++++
T Consensus 219 P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~-~~G~~TLLvltGv~~led~~~ 280 (306)
T KOG2882|consen 219 PIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGK-NCGFKTLLVLSGVTTLEDILE 280 (306)
T ss_pred CeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhh-ccCcceEEEecCcCcHHHHHh
Confidence 355555555555544321 34899999999999999887 569999999876655544443
No 176
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.89 E-value=2.9e+02 Score=29.12 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006585 512 LRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFH 580 (639)
Q Consensus 512 ~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~~~Fn 580 (639)
...+|..|+...+.|++.+..+..... .+.+.....+..+..+..++|..+....+.|..+-|
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~~------~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRLD------EEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHHH------HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555656666666655443321 333456677888888888888888777777665543
No 177
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=32.81 E-value=1.1e+02 Score=32.13 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=40.4
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 006585 323 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 369 (639)
Q Consensus 323 ~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~ 369 (639)
.....++..-+++++.+++.|.+.|..++-+|...-.+.+..+.+|-
T Consensus 73 i~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk 119 (252)
T PF11019_consen 73 IFELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELK 119 (252)
T ss_pred HHhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHH
Confidence 33444555567899999999999999999999999999999999994
No 178
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=32.58 E-value=24 Score=32.29 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=19.0
Q ss_pred EEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 160 VGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 160 iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
|-||+|+||+.+.. .+++...+.+.+..|.+
T Consensus 1 iifD~dgtL~d~~~-----~~~~~~~~~~~~~~~~~ 31 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP-----AIFRALQRLALEEFGLE 31 (176)
T ss_dssp EEEESBTTTEEHHH-----HHHHHHHHHHHHHTTHH
T ss_pred cEEECCCCcEeCHH-----HHHHHHHHHHHHHhCCC
Confidence 46999999997653 33444444334455554
No 179
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=31.83 E-value=16 Score=34.42 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.4
Q ss_pred EEEeeccccccccCcc
Q 006585 159 AVGFDMDYTLAQYKPE 174 (639)
Q Consensus 159 ~iGFDmDYTLa~Y~~~ 174 (639)
++-||||+||+...+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4679999999998754
No 180
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=31.38 E-value=62 Score=34.34 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
-|....+|+.|++.|.++|++||..-...+.++..+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 477889999999999999999999876666666555
No 181
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.08 E-value=37 Score=34.51 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHH
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLV 189 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV 189 (639)
....+-||||+||+. ...++.+......+..|
T Consensus 4 ~~~L~vFD~D~TLi~--~~~~~~~~~~~g~~~~v 35 (212)
T COG0560 4 MKKLAVFDLDGTLIN--AELIDELARGAGVGEEV 35 (212)
T ss_pred ccceEEEecccchhh--HHHHHHHHHHhCCHHHH
Confidence 456788999999998 33344444433333333
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.73 E-value=2.8e+02 Score=30.10 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006585 555 DDLEYQRDKARLSHQEA 571 (639)
Q Consensus 555 ~~l~~er~~lr~~~~~~ 571 (639)
.+.+.+++.+.....-+
T Consensus 109 ~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 183
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=30.70 E-value=53 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhc
Q 006585 327 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 369 (639)
Q Consensus 327 eKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~ 369 (639)
..||.+-|.+..+|+.+.+. ..+++.|.+.-.|++.++..+.
T Consensus 32 ~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 32 GYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT
T ss_pred ceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh
Confidence 56777889999999999665 7999999999999999999994
No 184
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=30.70 E-value=25 Score=34.88 Aligned_cols=11 Identities=64% Similarity=0.930 Sum_probs=0.0
Q ss_pred cEEEeeccccc
Q 006585 158 VAVGFDMDYTL 168 (639)
Q Consensus 158 ~~iGFDmDYTL 168 (639)
+.|-||+||||
T Consensus 4 klvvFDLD~Tl 14 (169)
T PF12689_consen 4 KLVVFDLDYTL 14 (169)
T ss_dssp SEEEE-STTTS
T ss_pred cEEEEcCcCCC
No 185
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=30.47 E-value=22 Score=33.68 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHHhcccCCCcEEEEccccccccccccc
Q 006585 459 HKLLSIESSSQVLYVGDHIYGDILRSKK 486 (639)
Q Consensus 459 ~~ll~~~~G~~VLYfGDHIygDIl~sKk 486 (639)
.+.+|. ...+++||||| ..||..+++
T Consensus 149 ~~~~~~-~p~~~l~vgD~-~~Di~~A~~ 174 (175)
T TIGR01493 149 FDTVGL-PPDRVLMVAAH-QWDLIGARK 174 (175)
T ss_pred HHHHCC-CHHHeEeEecC-hhhHHHHhc
Confidence 344566 57899999999 479877764
No 186
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.29 E-value=35 Score=35.01 Aligned_cols=106 Identities=17% Similarity=0.335 Sum_probs=63.6
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEee
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE 413 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~ 413 (639)
+.+..+|+.+|+.|+|.-|.-|-.-..... .++ .++-|.|.+-+--|+|-.. .|....
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i--~~~----------------l~~~D~vlvMtV~PGfgGq----~fi~~~ 150 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHL--EYI----------------MDKVDLILLMSVNPGFGGQ----SFIPHT 150 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHH--HHH----------------HHhCCeEEEEEecCCCCCc----eecHhH
Confidence 457789999999999999999877543322 233 3477999999999999652 343322
Q ss_pred CCCCccccCCCCCCCCcccCCCccccccccCCCCceecCC--CHHHHHHHhcccCCCcEEEEcccccc
Q 006585 414 PESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGG--SVGHLHKLLSIESSSQVLYVGDHIYG 479 (639)
Q Consensus 414 ~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgG--n~~~L~~ll~~~~G~~VLYfGDHIyg 479 (639)
.+ +++ ++-. +..... -.-.|...| |.+.+.++.. .|.+++-+|=-||+
T Consensus 151 le--kI~---------~l~~----~~~~~~-~~~~I~vdGGI~~eni~~l~~--aGAd~vVvGSaIf~ 200 (220)
T PRK08883 151 LD--KLR---------AVRK----MIDESG-RDIRLEIDGGVKVDNIREIAE--AGADMFVAGSAIFG 200 (220)
T ss_pred HH--HHH---------HHHH----HHHhcC-CCeeEEEECCCCHHHHHHHHH--cCCCEEEEeHHHhC
Confidence 11 111 0000 000000 012244455 4455666665 49999999976664
No 187
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=30.25 E-value=36 Score=31.40 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=17.9
Q ss_pred HHHHhcccCCCcEEEEcccccccccccc
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSK 485 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sK 485 (639)
+++.++. .. +++||||+ -.||..++
T Consensus 127 ~~~~~~~-~~-~~l~iGDs-~~Di~aa~ 151 (154)
T TIGR01549 127 ALESLGL-PP-EVLHVGDN-LNDIEGAR 151 (154)
T ss_pred HHHHcCC-CC-CEEEEeCC-HHHHHHHH
Confidence 4455576 45 89999999 67876654
No 188
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.91 E-value=1.4e+02 Score=30.90 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=36.1
Q ss_pred Cccccccc-----CCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 325 DPKTYINE-----DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 325 npeKYI~k-----dp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
+.+.||.+ .|.++.+-++|++.|++|+||+..=-.++..|.+-|
T Consensus 77 qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L 125 (227)
T KOG1615|consen 77 QVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL 125 (227)
T ss_pred HHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh
Confidence 34445544 588899999999999999999999888888888866
No 189
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=29.41 E-value=18 Score=34.26 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=28.8
Q ss_pred HHHhCcccccccC--CChHHHHHHHHhcCCeEEEecCCCh
Q 006585 321 MVAKDPKTYINED--RSIVPMLKMLRESGRSTFLVTNSLW 358 (639)
Q Consensus 321 ~v~~npeKYI~kd--p~L~~~L~~Lr~~GKKlFLiTNS~~ 358 (639)
-+.++||-++|+. ..+..+|..+.+.|.++|+.|-|++
T Consensus 261 lliDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 261 LLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3578899999995 5566777666666789999999975
No 190
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=29.20 E-value=37 Score=33.41 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=0.0
Q ss_pred EEeeccccccccCcchhHHHHHHHHHHHHHHhcCCC
Q 006585 160 VGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYP 195 (639)
Q Consensus 160 iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP 195 (639)
|.||||+||+ +....-.-....++++|.+ .|++
T Consensus 1 i~~DlDGTLl--~~~~~i~~~~~~al~~l~~-~Gi~ 33 (225)
T TIGR01482 1 IASDIDGTLT--DPNRAINESALEAIRKAES-VGIP 33 (225)
T ss_pred CeEeccCccC--CCCcccCHHHHHHHHHHHH-CCCE
No 191
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=29.15 E-value=52 Score=31.78 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=11.8
Q ss_pred EEEeeccccccccC
Q 006585 159 AVGFDMDYTLAQYK 172 (639)
Q Consensus 159 ~iGFDmDYTLa~Y~ 172 (639)
+|-||||+||+...
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 36799999999875
No 192
>PLN02887 hydrolase family protein
Probab=28.87 E-value=58 Score=38.32 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCcEEEeeccccccccCcchhHHHHHHHHHHHHHHhcCCCh
Q 006585 156 NIVAVGFDMDYTLAQYKPETFESLAYDGTVRKLVYDLGYPE 196 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~~~gYP~ 196 (639)
+|+.|.||||+||..-+. ....-.. .++++|. +.|+.-
T Consensus 307 ~iKLIa~DLDGTLLn~d~-~Is~~t~-eAI~kl~-ekGi~~ 344 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS-QISETNA-KALKEAL-SRGVKV 344 (580)
T ss_pred CccEEEEeCCCCCCCCCC-ccCHHHH-HHHHHHH-HCCCeE
Confidence 699999999999997543 2333333 4466665 467653
No 193
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=28.77 E-value=29 Score=35.66 Aligned_cols=13 Identities=46% Similarity=0.478 Sum_probs=0.0
Q ss_pred CcEEEeecccccc
Q 006585 157 IVAVGFDMDYTLA 169 (639)
Q Consensus 157 I~~iGFDmDYTLa 169 (639)
|+.|-||||+||.
T Consensus 2 ~kli~~DlDGTLl 14 (272)
T PRK15126 2 ARLAAFDMDGTLL 14 (272)
T ss_pred ccEEEEeCCCcCc
No 194
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=28.64 E-value=1.8e+02 Score=31.73 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccCCccchhhhhhhcccc
Q 006585 561 RDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFAC 605 (639)
Q Consensus 561 r~~lr~~~~~~~~~~~~~Fn~~~GSlFRtG~~~S~FA~Qv~RyAD 605 (639)
++.+++.++.|.++.-..--..||..+=+-......++++..-++
T Consensus 243 ~~~V~~iv~~m~~~a~~agqSSwGPtvY~i~d~~~~~~~~~~~~~ 287 (312)
T COG1907 243 REDVKEIVDEMVEAAYGAGQSSWGPTVYGIVDSREAGSVVRKLID 287 (312)
T ss_pred cHHHHHHHHHHHHhcccccccccCCEEEEeccccccchHHHHHHH
Confidence 344555555555442122335799988777666666665554443
No 195
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=28.35 E-value=31 Score=35.25 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=23.8
Q ss_pred HHHHHHhcccCCCcEEEEcccccccccccccc----cC--eeEEEee
Q 006585 456 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKV----LG--WRTMLVV 496 (639)
Q Consensus 456 ~~L~~ll~~~~G~~VLYfGDHIygDIl~sKk~----~g--WRT~aIV 496 (639)
..+.+.++. ....++||||. ..|+---+.. .+ =.++.|.
T Consensus 173 ~~~~~~~~~-~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 173 KRLLWHQPG-SGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred HHHHHhccc-CCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEe
Confidence 445566665 56899999995 4466555443 22 3466654
No 196
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=27.84 E-value=69 Score=33.19 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHHHHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCC
Q 006585 297 DYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDG 376 (639)
Q Consensus 297 ~y~~l~~DVr~Avd~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~ 376 (639)
+...+.....+..+..+....+. |....+++.|+++|-++=|+|||+......-.++.
T Consensus 72 s~ee~~~e~~~~~~~~~~~~~~~--------------PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~-------- 129 (222)
T KOG2914|consen 72 SREEFNKEEEEILDRLFMNSILM--------------PGAEKLVNHLKNNGIPVALATSSTSASFELKISRH-------- 129 (222)
T ss_pred CHHHHHHHHHHHHHHhccccccC--------------CcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh--------
Confidence 45555555555555444333332 47889999999999999999999888888777776
Q ss_pred CCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHH
Q 006585 377 GITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVG 456 (639)
Q Consensus 377 ~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~ 456 (639)
+++.+.|+.+|. +.-|..=.. .| ...+|-
T Consensus 130 -----~~~~~~f~~~v~-~d~~~v~~g---KP-------------------------------------~Pdi~l----- 158 (222)
T KOG2914|consen 130 -----EDIFKNFSHVVL-GDDPEVKNG---KP-------------------------------------DPDIYL----- 158 (222)
T ss_pred -----hHHHHhcCCCee-cCCccccCC---CC-------------------------------------CchHHH-----
Confidence 678899999988 554433221 01 011221
Q ss_pred HHHHHhcccCC-CcEEEEcccccccccccccccCeeEEEeec
Q 006585 457 HLHKLLSIESS-SQVLYVGDHIYGDILRSKKVLGWRTMLVVP 497 (639)
Q Consensus 457 ~L~~ll~~~~G-~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 497 (639)
.-.+.+|. .. .++|-|.|.+-| +.+-+..||..++|-.
T Consensus 159 ~A~~~l~~-~~~~k~lVfeds~~G--v~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 159 KAAKRLGV-PPPSKCLVFEDSPVG--VQAAKAAGMQVVGVAT 197 (222)
T ss_pred HHHHhcCC-CCccceEEECCCHHH--HHHHHhcCCeEEEecC
Confidence 12345565 34 788888888887 4555677999888754
No 197
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=27.59 E-value=60 Score=37.37 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.8
Q ss_pred CChHHHHHHHHhcCC-eEEEecCCChhhhHHHHHhh
Q 006585 334 RSIVPMLKMLRESGR-STFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 334 p~L~~~L~~Lr~~GK-KlFLiTNS~~dYtn~vM~yl 368 (639)
|.....|++|++.|. ++.++||.+..++..++..+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 677889999999999 99999999999999999987
No 198
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=27.22 E-value=45 Score=33.18 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCCHHHHHHHhcc---cCCCcEEEEcccccccccccccccCeeEEEeecccHH
Q 006585 452 GGSVGHLHKLLSI---ESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELER 501 (639)
Q Consensus 452 gGn~~~L~~ll~~---~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~ 501 (639)
+|....+..+.+- .+.++|+.|||-+|.||+-+... |--++.+-|=...
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~gv~~ 172 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPGVRA 172 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEecccccc
Confidence 4566666667662 25699999999999999988765 5445655444433
No 199
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=27.13 E-value=31 Score=37.35 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCCcEEEeeccccccccCcchh---HHHHHHHHHHHHHHhcCCChhhc
Q 006585 154 MKNIVAVGFDMDYTLAQYKPETF---ESLAYDGTVRKLVYDLGYPEELL 199 (639)
Q Consensus 154 L~~I~~iGFDmDYTLa~Y~~~~~---e~L~Ye~~~~~LV~~~gYP~ell 199 (639)
.+-.++|+||||+||..=..+ . ..-+++. ++.|- +.|++=.+.
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~~-v~irdp~V~Et-L~eLk-ekGikLaIv 170 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEEP-VRIRDPFVYDS-LDELK-ERGCVLVLW 170 (303)
T ss_pred eeeccEEEEecCCCccCCCCc-cccCChhHHHH-HHHHH-HCCCEEEEE
Confidence 345579999999999886532 2 1335564 55564 588886655
No 200
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=27.05 E-value=66 Score=37.14 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=33.0
Q ss_pred CChHHHHHHHHhcC-CeEEEecCCChhhhHHHHHhh
Q 006585 334 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 334 p~L~~~L~~Lr~~G-KKlFLiTNS~~dYtn~vM~yl 368 (639)
|....+|++|++.| .++.++||.+-.++..+++.+
T Consensus 387 ~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 387 PEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred HhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 77889999999999 999999999999999999987
No 201
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=26.52 E-value=63 Score=33.69 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCC
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSL 357 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~ 357 (639)
-|....+|++|+++|+++.++||..
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 3668899999999999999999854
No 202
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=26.48 E-value=2.7e+02 Score=28.50 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=10.7
Q ss_pred EEcccccccccccccc
Q 006585 472 YVGDHIYGDILRSKKV 487 (639)
Q Consensus 472 YfGDHIygDIl~sKk~ 487 (639)
+||+|.=-||+-+=++
T Consensus 41 ~F~~~~~rdiY~sL~~ 56 (190)
T PF09802_consen 41 WFPEHLQRDIYLSLLH 56 (190)
T ss_pred CCCchhHHHHHHHHHh
Confidence 5777777777665444
No 203
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=26.05 E-value=72 Score=32.50 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.7
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
++....|+++++.|.+++|+|..++..+..++..+
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l 57 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEEL 57 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc
Confidence 56778999999999999999999999888888877
No 204
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=25.65 E-value=73 Score=33.02 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCceEEeCccc----------C----CCCcEEEeeccccccccCcch-------hHHHHHHHHHHHHHHhcCCChh-hc
Q 006585 142 IGKQIFCNRSLN----------M----KNIVAVGFDMDYTLAQYKPET-------FESLAYDGTVRKLVYDLGYPEE-LL 199 (639)
Q Consensus 142 ~~~~VF~NR~L~----------L----~~I~~iGFDmDYTLa~Y~~~~-------~e~L~Ye~~~~~LV~~~gYP~e-ll 199 (639)
.+..|||.+..- + ++|.++||| |.-++.|-.+. .+.++.. +++.|++.+.-++. -.
T Consensus 238 ~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd-~~~~~~~~~p~lTti~~~~~~~g~~-a~~~l~~~i~~~~~~~~ 315 (327)
T TIGR02417 238 LPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFG-DNYLLDFLPLPINSVAQQHRQLAWH-ALELALAAIDGKKPEPG 315 (327)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEC-CchHHHccCCCceEEeCCHHHHHHH-HHHHHHHHhcCCCCCCc
Confidence 367999986321 1 489999999 76677765442 2444443 34445544443321 11
Q ss_pred CCCCCccccccc
Q 006585 200 EWSFDWKYMVRG 211 (639)
Q Consensus 200 ~~~yDp~F~iRG 211 (639)
.....+.+.+||
T Consensus 316 ~~~i~~~li~r~ 327 (327)
T TIGR02417 316 QRYIPRTLQIRH 327 (327)
T ss_pred eEEeccEEEecC
Confidence 223567777776
No 205
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.84 E-value=5.2e+02 Score=24.10 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=45.0
Q ss_pred eecccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-----CC-------------CCh--------HHHH
Q 006585 495 VVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKS-----EG-------------IDV--------DEQR 548 (639)
Q Consensus 495 IVpELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~-----~~-------------~~~--------~~~~ 548 (639)
|=|+++.++.-+.. +..+++.+...+..++.+++.....+.- ++ .+- +..+
T Consensus 5 ~~~~~q~~~~~~q~---lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E 81 (121)
T PRK09343 5 IPPEVQAQLAQLQQ---LQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKE 81 (121)
T ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 34667777666554 4556666666666666655543332220 00 000 1112
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006585 549 KMCTRMDDLEYQRDKARLSHQEAQRECHQKF 579 (639)
Q Consensus 549 ~~~~~l~~l~~er~~lr~~~~~~~~~~~~~F 579 (639)
.+...+..+.+..+.++..+.+++..+.+++
T Consensus 82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 82 LLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777776665544
No 206
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=24.56 E-value=43 Score=33.38 Aligned_cols=30 Identities=23% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHhcccCCCcEEEEcccccccccccccccCe
Q 006585 458 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 490 (639)
Q Consensus 458 L~~ll~~~~G~~VLYfGDHIygDIl~sKk~~gW 490 (639)
..+.++. ...+|+||||. .+|+..++ ..|.
T Consensus 152 ~l~~~~~-~~~~~i~iGDs-~~Di~aa~-~Ag~ 181 (219)
T PRK09552 152 LIRKLSD-TNDFHIVIGDS-ITDLEAAK-QADK 181 (219)
T ss_pred HHHHhcc-CCCCEEEEeCC-HHHHHHHH-HCCc
Confidence 4444565 56799999999 45877665 4566
No 207
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.36 E-value=97 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.1
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
|....+|+.|+++|++++++||+.-.=...+..++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l 51 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKL 51 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999987744333333333
No 208
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.09 E-value=2e+02 Score=33.40 Aligned_cols=116 Identities=13% Similarity=0.250 Sum_probs=69.0
Q ss_pred Cccccc-ccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCC
Q 006585 325 DPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 403 (639)
Q Consensus 325 npeKYI-~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e 403 (639)
+.||=| .|+.+-..+.+...++||+|.||+ +-.+-..++.=++- +.-|.|.+
T Consensus 92 ~tEKevLypn~~~~eL~e~ai~n~krVIlIS--DMYlps~Il~~~L~------------------------s~g~d~~n- 144 (635)
T COG5610 92 NTEKEVLYPNKKNIELVEEAIKNEKRVILIS--DMYLPSSILRTFLN------------------------SFGPDFNN- 144 (635)
T ss_pred ccceeEeeccccchHHHHHHHhCCCeEEEEe--cccCcHHHHHHHHH------------------------hcCCCccC-
Confidence 455544 567788889999999999999995 44455566655543 12233333
Q ss_pred CCCCcceEeeCCCCccccCCCCCCCCcccCCCccccccccCCCCceecCCCHHHHHHHhcccCCCcEEEEcccccccccc
Q 006585 404 DNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILR 483 (639)
Q Consensus 404 ~~~~p~f~V~~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~ 483 (639)
-|++--. ..+.+. ..|..| +++.++=.+ ..++.+-+||+..+|++.
T Consensus 145 ---ipiY~S~----e~rl~K---------------------nSg~LF-----k~Vlk~EnV-d~~~w~H~GDN~~aD~l~ 190 (635)
T COG5610 145 ---IPIYMSS----EFRLKK---------------------NSGNLF-----KAVLKLENV-DPKKWIHCGDNWVADYLK 190 (635)
T ss_pred ---ceeeecc----eeehhc---------------------ccchHH-----HHHHhhcCC-ChhheEEecCchhhhhcC
Confidence 3444311 111000 122222 234444444 578999999999999999
Q ss_pred cccccCeeEEEeecccHHH
Q 006585 484 SKKVLGWRTMLVVPELERE 502 (639)
Q Consensus 484 sKk~~gWRT~aIVpELe~E 502 (639)
||+. |--|-.-+-||-+=
T Consensus 191 pk~L-gI~Tlf~~s~l~~~ 208 (635)
T COG5610 191 PKNL-GISTLFYISQLLPY 208 (635)
T ss_pred cccc-chhHHHHHHHhhhH
Confidence 9864 65554445555443
No 209
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=24.08 E-value=3.9e+02 Score=25.72 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006585 503 VELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECH 576 (639)
Q Consensus 503 i~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~ 576 (639)
|++++.-+.++...+.|.. +.|++.+..|.... +++.+-....+.-.+++.+....+++++.+++
T Consensus 5 lk~l~n~R~lra~~re~~~--e~Lee~~ekl~~vv-------~er~~~~~~~~~~~~er~~~l~~i~~~~~~~G 69 (134)
T PRK10328 5 LQSLNNIRTLRAMAREFSI--DVLEEMLEKFRVVT-------KERREEEEQQQRELAERQEKINTWLELMKADG 69 (134)
T ss_pred HHHHhhHHHHHHHHHhCCH--HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666666666666542 34566665555432 22222223333444556666666666665553
No 210
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.95 E-value=2.5e+02 Score=33.32 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC-CChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006585 497 PELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHHLKWSLKSEG-IDVDEQRKMCTRMDDLEYQRDKARLSHQ 569 (639)
Q Consensus 497 pELe~Ei~i~~~~-~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~-~~~~~~~~~~~~l~~l~~er~~lr~~~~ 569 (639)
.||+.|++..... ....+++..++...+.++..+..+.-.+...+ .-.++++++...+..++.++++.+....
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543322 12233344444444444444433332222111 1112333444444444444444444433
No 211
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=23.76 E-value=87 Score=30.47 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=31.6
Q ss_pred cCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHh
Q 006585 332 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 367 (639)
Q Consensus 332 kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~y 367 (639)
..+.+..+|++|++.|.++.++|+.....+...+..
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 357788999999999999999999999888877764
No 212
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=1.1e+02 Score=33.86 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=45.5
Q ss_pred CChHHHHHHHHhcC-CeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 006585 334 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 395 (639)
Q Consensus 334 p~L~~~L~~Lr~~G-KKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A 395 (639)
|.+..|++.|-+.| .-+|-++||+|.+-...-.|+.-..+.+++ --..+|-..||.|++.+
T Consensus 199 pGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GP-l~L~~~g~~~~~i~~sg 260 (373)
T COG4850 199 PGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGP-LLLRRWGGVLDNIIESG 260 (373)
T ss_pred CCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCc-hhHhhcCCcccccccch
Confidence 67888999988887 899999999999999999999765443222 22456766677666654
No 213
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.66 E-value=72 Score=28.66 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHhcCCeEEEecCCCh
Q 006585 333 DRSIVPMLKMLRESGRSTFLVTNSLW 358 (639)
Q Consensus 333 dp~L~~~L~~Lr~~GKKlFLiTNS~~ 358 (639)
.+++..+++..|++|.++..||+.+-
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46788999999999999999999764
No 214
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.64 E-value=5.7e+02 Score=27.06 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006585 499 LEREVELLWELR-DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQ 577 (639)
Q Consensus 499 Le~Ei~i~~~~~-~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~~~ 577 (639)
|..|+.++.+.. ....+|..|+...+.|++++. ..+.++.+.-.++...++.+...++.+.+.-+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~-------------~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIE-------------DLKERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 006585 578 KF 579 (639)
Q Consensus 578 ~F 579 (639)
.+
T Consensus 161 ~~ 162 (239)
T COG1579 161 LS 162 (239)
T ss_pred HH
No 215
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=23.45 E-value=58 Score=32.93 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=15.8
Q ss_pred eeccccccccCcchhHHHHHHHHHHHHHH
Q 006585 162 FDMDYTLAQYKPETFESLAYDGTVRKLVY 190 (639)
Q Consensus 162 FDmDYTLa~Y~~~~~e~L~Ye~~~~~LV~ 190 (639)
||+|+||+-+............+++-|-+
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~ 30 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRA 30 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHH
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHH
Confidence 79999999999866676677777776654
No 216
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.30 E-value=1e+02 Score=31.90 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=63.6
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCCCCCCCcceEee
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE 413 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g~~~~~~~~~~~~dWrdyFDvVIv~A~KP~FF~e~~~~p~f~V~ 413 (639)
+.+..+|+.+|+.|.|.-|.-|-.-.- +.+-.|+ ++.|.|.+-+--|+|-.. .|.+-.
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~-~~i~~~l-----------------~~vD~VlvMtV~PGf~GQ----~fi~~~ 154 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPV-DILDWVL-----------------PELDLVLVMSVNPGFGGQ----AFIPSA 154 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCH-HHHHHHH-----------------hhcCEEEEEEECCCCCCc----cccHHH
Confidence 457789999999999999998876432 2233333 478999999999999863 333211
Q ss_pred CCCCccccCCCCCCCCcccCCCccccccccCCCCceecCC--CHHHHHHHhcccCCCcEEEEcccccc
Q 006585 414 PESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGG--SVGHLHKLLSIESSSQVLYVGDHIYG 479 (639)
Q Consensus 414 ~~tG~l~~~d~g~p~~~vg~l~~~~~~~~~~~~g~VYsgG--n~~~L~~ll~~~~G~~VLYfGDHIyg 479 (639)
.+ +++ .+ ..+..... ....|..-| |.+.+.++.. .|.+++-+|=-||+
T Consensus 155 l~--KI~------------~l-~~~~~~~~-~~~~IeVDGGI~~eti~~l~~--aGaDi~V~GSaiF~ 204 (223)
T PRK08745 155 LD--KLR------------AI-RKKIDALG-KPIRLEIDGGVKADNIGAIAA--AGADTFVAGSAIFN 204 (223)
T ss_pred HH--HHH------------HH-HHHHHhcC-CCeeEEEECCCCHHHHHHHHH--cCCCEEEEChhhhC
Confidence 00 010 00 00000000 113355555 4566666666 49999999977765
No 217
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=22.81 E-value=42 Score=31.93 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=12.0
Q ss_pred CcEEEeeccccccc
Q 006585 157 IVAVGFDMDYTLAQ 170 (639)
Q Consensus 157 I~~iGFDmDYTLa~ 170 (639)
|+++-||||+||..
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 57888999999987
No 218
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.81 E-value=3.1e+02 Score=32.61 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=46.6
Q ss_pred cEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHH
Q 006585 469 QVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQR 548 (639)
Q Consensus 469 ~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~ 548 (639)
+.+=-|=|++++...+- .|.-.+-+|.|+- +|.+ ....||.+|+..|.+|...+..++..+ +
T Consensus 56 dA~~~~~~~~~p~~~s~--~~~s~~r~~~e~~---RI~~---sVs~EL~ele~krqel~seI~~~n~ki----------E 117 (907)
T KOG2264|consen 56 DALKQNIENLDPYDASC--SGYSIGRILREQK---RILA---SVSLELTELEVKRQELNSEIEEINTKI----------E 117 (907)
T ss_pred ccchhcccccCcccccc--cchhHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH----------H
Confidence 33344556666665542 3333333444433 3322 234677777777766655554443321 2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006585 549 KMCTRMDDLEYQRDKARLSHQEAQRECHQK 578 (639)
Q Consensus 549 ~~~~~l~~l~~er~~lr~~~~~~~~~~~~~ 578 (639)
++.+.+.+-+.|..+++..+.++++++.+.
T Consensus 118 elk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 118 ELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 334444445555556666666665555543
No 219
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.29 E-value=4.8e+02 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=9.4
Q ss_pred cHHHHHHHHHhHHHHHHHHHHH
Q 006585 499 LEREVELLWELRDLRKKLHLLR 520 (639)
Q Consensus 499 Le~Ei~i~~~~~~~~~~L~~L~ 520 (639)
|+.||.+- ..+.++|....
T Consensus 6 L~~Eirak---Q~~~eEL~kvk 24 (61)
T PF08826_consen 6 LEAEIRAK---QAIQEELTKVK 24 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHH
Confidence 45565542 33555555443
No 220
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=22.27 E-value=58 Score=36.68 Aligned_cols=48 Identities=23% Similarity=0.494 Sum_probs=37.2
Q ss_pred CCceecCCCHHHHHHHhcccCCCcEEEEcccccccccccc-------------------------cccCeeEEEee
Q 006585 446 TCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK-------------------------KVLGWRTMLVV 496 (639)
Q Consensus 446 ~g~VYsgGn~~~L~~ll~~~~G~~VLYfGDHIygDIl~sK-------------------------k~~gWRT~aIV 496 (639)
-|.|| +.+||+++....+.-.|+-+-|.||+|.+-.. ..-|||++-|+
T Consensus 212 cGnVy---s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~ 284 (447)
T KOG0259|consen 212 CGNVY---SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIA 284 (447)
T ss_pred Ccccc---cHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEE
Confidence 36799 67888888877666789999999999876432 34699999876
No 221
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=21.99 E-value=66 Score=36.16 Aligned_cols=15 Identities=53% Similarity=0.505 Sum_probs=13.6
Q ss_pred CcEEEeecccccccc
Q 006585 157 IVAVGFDMDYTLAQY 171 (639)
Q Consensus 157 I~~iGFDmDYTLa~Y 171 (639)
|+++=||||+||+.-
T Consensus 241 ~k~vIFDlDGTLiDs 255 (459)
T PRK06698 241 LQALIFDMDGTLFQT 255 (459)
T ss_pred hhheeEccCCceecc
Confidence 689999999999984
No 222
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.76 E-value=9.1e+02 Score=25.07 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=50.0
Q ss_pred HHhhccchhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhhcc
Q 006585 310 DLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 370 (639)
Q Consensus 310 d~vH~~G~lk~~v~~npeKYI~kdp~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl~g 370 (639)
+.+|. .+ +++.+...+=|.=||..+++.+-.++++-.+.+++..-=.|+..+.+-++|
T Consensus 55 ~~i~~--s~-~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 55 GSIHS--SL-EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HhcCC--CH-HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 44553 34 888888888888899999999999999988888888888899999999988
No 223
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.44 E-value=5.4e+02 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006585 551 CTRMDDLEYQRDKARLSHQEAQREC 575 (639)
Q Consensus 551 ~~~l~~l~~er~~lr~~~~~~~~~~ 575 (639)
++.++++...+++|.-...+|...+
T Consensus 90 ~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 90 EQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 224
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.30 E-value=7.6e+02 Score=23.93 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=41.2
Q ss_pred CCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChH
Q 006585 466 SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVD 545 (639)
Q Consensus 466 ~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~ 545 (639)
-|++.+|+=..-=-+.... .-+.+|..||.. +++++..|......++..++.|.... ..
T Consensus 53 ~GKqkiY~~~Q~~~~~~s~---------eel~~ld~ei~~------L~~el~~l~~~~k~l~~eL~~L~~~~-----t~- 111 (169)
T PF07106_consen 53 YGKQKIYFANQDELEVPSP---------EELAELDAEIKE------LREELAELKKEVKSLEAELASLSSEP-----TN- 111 (169)
T ss_pred ecceEEEeeCccccCCCCc---------hhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCC-----CH-
Confidence 5789999866443332221 122344444333 34455555555555555555544322 11
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006585 546 EQRKMCTRMDDLEYQRDKARLSHQEA 571 (639)
Q Consensus 546 ~~~~~~~~l~~l~~er~~lr~~~~~~ 571 (639)
.++...+.++.++.+++...+..+
T Consensus 112 --~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 112 --EELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224455555666655555555443
No 225
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.20 E-value=7.2e+02 Score=28.06 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=36.5
Q ss_pred CeeEEEee----cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHH---HHhhhHHHHHHHHH
Q 006585 489 GWRTMLVV----PELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQ---RKMCTRMDDLEYQR 561 (639)
Q Consensus 489 gWRT~aIV----pELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~---~~~~~~l~~l~~er 561 (639)
+=+|-+.+ |+|.++++.+. ++++.+....+.|+..+..+.........+.+.+ +.+.....++.++.
T Consensus 318 ~~~T~i~vg~~~~~l~~~~~~l~------~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 391 (451)
T PF03961_consen 318 GTKTEIEVGVDRPELKEKLEELE------EELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEEL 391 (451)
T ss_pred cccEEEEEecCcHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566655 66666665443 3444444444445554444433211111122111 22333444445555
Q ss_pred HHHHHHHHHHHHHHh
Q 006585 562 DKARLSHQEAQRECH 576 (639)
Q Consensus 562 ~~lr~~~~~~~~~~~ 576 (639)
++++....++++.+.
T Consensus 392 ~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 392 KELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 226
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.08 E-value=5e+02 Score=25.90 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=6.8
Q ss_pred hhhhhhccccc
Q 006585 596 FAHQVERFACL 606 (639)
Q Consensus 596 FA~Qv~RyADL 606 (639)
||++|.+|.-.
T Consensus 89 YA~rISk~t~~ 99 (188)
T PF10018_consen 89 YAHRISKFTSA 99 (188)
T ss_pred HHHHHHHhcCC
Confidence 67777666544
No 227
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=20.97 E-value=47 Score=32.55 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=9.8
Q ss_pred CCcEEEeeccccccc
Q 006585 156 NIVAVGFDMDYTLAQ 170 (639)
Q Consensus 156 ~I~~iGFDmDYTLa~ 170 (639)
.|+.|-||+|+||..
T Consensus 20 ~ikli~~D~Dgtl~~ 34 (183)
T PRK09484 20 NIRLLICDVDGVFSD 34 (183)
T ss_pred CceEEEEcCCeeeec
Confidence 466666666666664
No 228
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=20.94 E-value=39 Score=34.01 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=10.3
Q ss_pred EEEeeccccccc
Q 006585 159 AVGFDMDYTLAQ 170 (639)
Q Consensus 159 ~iGFDmDYTLa~ 170 (639)
.+-||||+||+.
T Consensus 3 la~FDlD~TLi~ 14 (203)
T TIGR02137 3 IACLDLEGVLVP 14 (203)
T ss_pred EEEEeCCcccHH
Confidence 367999999995
No 229
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=20.90 E-value=96 Score=36.05 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 334 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 334 p~L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
|....+|++||+.|.++.++||.+-.+++.+++.+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 66788999999999999999999999999999987
No 230
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.73 E-value=3.5e+02 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.3
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006585 499 LEREVELLWELRDLRKKLHLLRNERDLIEDQI 530 (639)
Q Consensus 499 Le~Ei~i~~~~~~~~~~L~~L~~~~~~led~~ 530 (639)
|++|+.++.++.++.+||.+|+..-+...+.+
T Consensus 205 l~qEval~adK~DI~EEl~RL~sHl~~f~~~L 236 (291)
T TIGR00255 205 LEQEAALLAQRIDIAEEIDRLDSHVKEFYNIL 236 (291)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987655554444
No 231
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=20.56 E-value=91 Score=31.44 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=24.6
Q ss_pred cccc------CCChHHHHHHHHhcCCeEEEecC
Q 006585 329 YINE------DRSIVPMLKMLRESGRSTFLVTN 355 (639)
Q Consensus 329 YI~k------dp~L~~~L~~Lr~~GKKlFLiTN 355 (639)
||++ .|.+.+.|..|++.|-++.++||
T Consensus 23 yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 23 YVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred ccCcHHHhccCccHHHHHHHHHhCCCeEEEEEC
Confidence 7776 58889999999999999999999
No 232
>PRK11820 hypothetical protein; Provisional
Probab=20.46 E-value=3.5e+02 Score=29.13 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=26.0
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006585 499 LEREVELLWELRDLRKKLHLLRNERDLIEDQI 530 (639)
Q Consensus 499 Le~Ei~i~~~~~~~~~~L~~L~~~~~~led~~ 530 (639)
|++|+.+++++.++.+||.+|...-+...+.+
T Consensus 202 l~qEval~adK~DI~EEi~RL~sHl~~f~~~L 233 (288)
T PRK11820 202 LEQEVALLAQKADIAEELDRLKSHLKEFREIL 233 (288)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999987655554444
No 233
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.25 E-value=5.3e+02 Score=22.52 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006585 497 PELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQREC 575 (639)
Q Consensus 497 pELe~Ei~i~~~~~~~~~~L~~L~~~~~~led~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~er~~lr~~~~~~~~~~ 575 (639)
||.-.+|..+......+..|-. .-.+|.+.+........ +...++++.|.+++=+|+..+..+...+
T Consensus 3 ~Efr~~is~Lk~~dahF~rLfd---~hn~LDd~I~~~E~n~~---------~~s~~ev~~LKKqkL~LKDEi~~~L~~a 69 (72)
T COG2841 3 HEFRDLISKLKANDAHFARLFD---KHNELDDRIKRAEGNRQ---------PGSDAEVSNLKKQKLQLKDEIASILQKA 69 (72)
T ss_pred hhHHHHHHHHhccchHHHHHHH---HHhHHHHHHHHHhcCCC---------CCcHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6777788877766655554432 22345565655444321 1234677888899988888887766544
No 234
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=20.10 E-value=1.1e+02 Score=30.12 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCeEEEecCCChhhhHHHHHhh
Q 006585 336 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 368 (639)
Q Consensus 336 L~~~L~~Lr~~GKKlFLiTNS~~dYtn~vM~yl 368 (639)
...+|++|+++|.++.++||-+...+..+...+
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 679999999999999999999999988888766
Done!