Query 006587
Match_columns 639
No_of_seqs 231 out of 1416
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 11:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02899 alpha-galactosidase 100.0 8E-149 2E-153 1218.6 51.2 614 24-639 19-633 (633)
2 PLN02229 alpha-galactosidase 100.0 3.4E-96 7E-101 787.6 39.0 361 28-638 55-419 (427)
3 PLN02692 alpha-galactosidase 100.0 1.8E-95 4E-100 778.9 38.8 361 27-639 47-411 (412)
4 PLN02808 alpha-galactosidase 100.0 3.4E-95 7E-100 775.4 37.1 363 25-639 21-386 (386)
5 PLN03231 putative alpha-galact 100.0 4.6E-94 9.9E-99 758.8 30.0 350 36-390 1-355 (357)
6 KOG2366 Alpha-D-galactosidase 100.0 6.3E-79 1.4E-83 628.4 25.5 370 25-639 22-412 (414)
7 PF02065 Melibiase: Melibiase; 100.0 1.4E-33 3E-38 305.1 19.1 283 31-382 36-333 (394)
8 COG3345 GalA Alpha-galactosida 99.9 3.6E-22 7.8E-27 215.3 13.0 169 32-232 288-462 (687)
9 PLN02355 probable galactinol-- 99.8 1.8E-18 3.9E-23 195.2 31.0 297 34-373 196-531 (758)
10 PLN02219 probable galactinol-- 99.8 4.9E-18 1.1E-22 191.3 31.0 298 32-373 190-523 (775)
11 PLN02684 Probable galactinol-- 99.8 1.2E-17 2.6E-22 188.1 30.5 295 38-373 204-522 (750)
12 cd06592 GH31_glucosidase_KIAA1 99.8 8.9E-17 1.9E-21 169.9 22.9 206 34-289 12-235 (303)
13 PLN02711 Probable galactinol-- 99.7 2.1E-15 4.6E-20 170.3 31.1 289 38-372 215-550 (777)
14 PF05691 Raffinose_syn: Raffin 99.7 5.7E-16 1.2E-20 176.2 21.9 300 38-384 197-547 (747)
15 cd06593 GH31_xylosidase_YicI Y 99.6 5.5E-14 1.2E-18 148.9 18.4 197 49-291 20-237 (308)
16 PLN02982 galactinol-raffinose 99.5 2.4E-12 5.2E-17 145.6 20.0 306 38-384 224-648 (865)
17 PRK10658 putative alpha-glucos 99.2 5E-10 1.1E-14 129.7 21.8 214 31-291 258-496 (665)
18 PF01055 Glyco_hydro_31: Glyco 99.2 2.6E-10 5.5E-15 126.7 17.6 217 31-293 20-268 (441)
19 cd06604 GH31_glucosidase_II_Ma 99.2 7.3E-10 1.6E-14 119.1 20.0 196 50-291 21-250 (339)
20 cd06599 GH31_glycosidase_Aec37 99.1 3.3E-09 7.2E-14 113.0 19.3 200 49-292 25-252 (317)
21 cd06600 GH31_MGAM-like This fa 99.1 5.5E-09 1.2E-13 111.4 20.0 197 50-292 21-229 (317)
22 cd06597 GH31_transferase_CtsY 99.1 1.9E-08 4.2E-13 108.2 24.1 232 33-292 3-265 (340)
23 cd06598 GH31_transferase_CtsZ 99.1 4.6E-09 1E-13 111.9 19.1 202 50-292 21-245 (317)
24 cd06594 GH31_glucosidase_YihQ 99.1 1.3E-08 2.7E-13 108.6 22.1 197 51-290 21-247 (317)
25 cd06602 GH31_MGAM_SI_GAA This 99.1 1E-08 2.2E-13 110.3 20.9 199 50-291 21-232 (339)
26 cd06591 GH31_xylosidase_XylS X 99.1 4.9E-09 1.1E-13 111.9 17.4 197 50-292 21-245 (319)
27 cd06595 GH31_xylosidase_XylS-l 99.0 1E-08 2.2E-13 108.1 17.5 190 50-289 22-223 (292)
28 cd06589 GH31 The enzymes of gl 99.0 5.2E-08 1.1E-12 101.3 20.4 169 32-292 2-200 (265)
29 cd06601 GH31_lyase_GLase GLase 98.9 4E-08 8.7E-13 105.3 18.8 172 50-292 21-233 (332)
30 COG1501 Alpha-glucosidases, fa 98.9 1.8E-08 4E-13 118.0 16.9 210 31-289 256-492 (772)
31 cd06603 GH31_GANC_GANAB_alpha 98.9 9.3E-08 2E-12 102.9 19.2 195 50-291 21-250 (339)
32 PLN02763 hydrolase, hydrolyzin 98.9 1.9E-07 4.1E-12 110.9 22.6 211 31-290 178-428 (978)
33 PRK10426 alpha-glucosidase; Pr 98.8 2.9E-07 6.2E-12 106.7 18.7 217 31-290 199-444 (635)
34 cd00161 RICIN Ricin-type beta- 98.3 2.4E-06 5.2E-11 76.1 7.5 97 459-565 10-117 (124)
35 PF10566 Glyco_hydro_97: Glyco 98.2 1.1E-05 2.3E-10 84.0 11.3 129 47-251 26-156 (273)
36 PF14200 RicinB_lectin_2: Rici 98.2 2.5E-06 5.3E-11 76.0 5.5 75 483-562 15-93 (105)
37 smart00458 RICIN Ricin-type be 98.1 8E-06 1.7E-10 72.9 7.0 92 460-564 8-108 (117)
38 PF00652 Ricin_B_lectin: Ricin 98.0 6.2E-06 1.4E-10 74.1 5.0 97 458-562 11-116 (124)
39 KOG1065 Maltase glucoamylase a 97.7 0.00025 5.4E-09 82.3 11.4 147 39-221 295-446 (805)
40 cd00161 RICIN Ricin-type beta- 97.6 0.00015 3.2E-09 64.5 6.5 64 493-564 9-73 (124)
41 smart00458 RICIN Ricin-type be 97.3 0.00035 7.7E-09 62.2 5.5 61 492-564 5-66 (117)
42 PF00652 Ricin_B_lectin: Ricin 97.0 0.00073 1.6E-08 60.6 4.4 73 484-565 4-77 (124)
43 KOG2366 Alpha-D-galactosidase 96.6 0.00075 1.6E-08 72.0 1.3 272 209-525 37-316 (414)
44 PF14200 RicinB_lectin_2: Rici 95.8 0.0084 1.8E-07 53.2 3.3 66 460-529 26-105 (105)
45 KOG3736 Polypeptide N-acetylga 95.5 0.017 3.7E-07 65.9 5.4 78 458-548 463-552 (578)
46 cd06596 GH31_CPE1046 CPE1046 i 95.3 0.2 4.4E-06 51.9 11.7 105 119-293 76-185 (261)
47 TIGR01515 branching_enzym alph 95.2 0.28 6.1E-06 57.3 14.0 142 51-222 154-297 (613)
48 PF13200 DUF4015: Putative gly 94.5 0.36 7.7E-06 51.7 11.5 128 51-222 11-146 (316)
49 KOG1066 Glucosidase II catalyt 94.4 0.22 4.7E-06 57.4 10.1 136 31-207 349-491 (915)
50 PF02638 DUF187: Glycosyl hydr 94.2 0.49 1.1E-05 50.6 11.9 119 120-252 72-229 (311)
51 PF02806 Alpha-amylase_C: Alph 93.2 0.78 1.7E-05 39.7 9.5 72 555-637 9-94 (95)
52 PF14509 GH97_C: Glycosyl-hydr 93.1 0.95 2.1E-05 40.5 10.0 74 556-638 15-103 (103)
53 PF08533 Glyco_hydro_42C: Beta 92.8 0.16 3.5E-06 40.3 4.1 54 559-635 4-57 (58)
54 PRK14706 glycogen branching en 92.6 1.5 3.3E-05 51.4 13.5 142 55-222 166-308 (639)
55 PLN02784 alpha-amylase 92.5 1.6 3.4E-05 52.4 13.3 34 190-223 642-676 (894)
56 COG0296 GlgB 1,4-alpha-glucan 92.3 0.67 1.4E-05 53.8 9.9 135 55-223 163-306 (628)
57 PLN02960 alpha-amylase 92.0 1.9 4.1E-05 51.9 13.3 132 64-222 424-558 (897)
58 PLN00196 alpha-amylase; Provis 91.9 2.1 4.6E-05 47.9 13.0 33 190-222 172-205 (428)
59 PLN02361 alpha-amylase 91.2 3.1 6.8E-05 46.1 13.3 34 190-223 148-182 (401)
60 PLN02447 1,4-alpha-glucan-bran 90.5 1.5 3.2E-05 52.2 10.4 134 64-222 258-392 (758)
61 PF14871 GHL6: Hypothetical gl 89.4 3.9 8.4E-05 38.2 10.4 124 61-220 4-131 (132)
62 PRK12568 glycogen branching en 89.1 3.1 6.6E-05 49.5 11.6 139 56-222 269-410 (730)
63 TIGR02104 pulA_typeI pullulana 88.5 4.6 0.0001 47.2 12.6 56 191-248 289-345 (605)
64 PRK14705 glycogen branching en 88.3 2.3 5E-05 53.2 10.3 134 63-222 772-906 (1224)
65 PRK12313 glycogen branching en 87.9 7.9 0.00017 45.5 14.1 133 64-222 178-311 (633)
66 PRK05402 glycogen branching en 87.6 6.6 0.00014 47.0 13.4 141 56-222 265-406 (726)
67 TIGR02402 trehalose_TreZ malto 87.5 8.2 0.00018 44.6 13.6 104 118-243 160-269 (542)
68 TIGR02455 TreS_stutzeri trehal 87.5 2.4 5.1E-05 49.4 9.0 75 553-638 606-683 (688)
69 PRK10933 trehalose-6-phosphate 86.8 5.2 0.00011 46.3 11.6 33 190-222 170-202 (551)
70 smart00812 Alpha_L_fucos Alpha 86.4 7.6 0.00017 42.8 12.1 21 120-140 130-150 (384)
71 TIGR02403 trehalose_treC alpha 86.3 4.7 0.0001 46.5 10.8 33 190-222 163-195 (543)
72 PF10438 Cyc-maltodext_C: Cycl 85.4 3.5 7.7E-05 35.0 6.9 66 559-636 13-78 (78)
73 PRK10785 maltodextrin glucosid 84.4 16 0.00036 42.6 14.2 175 51-248 177-369 (598)
74 TIGR02103 pullul_strch alpha-1 83.6 9.7 0.00021 46.5 12.1 58 191-250 466-524 (898)
75 TIGR02456 treS_nterm trehalose 82.6 4.2 9.2E-05 46.8 8.4 69 556-636 469-538 (539)
76 PF01120 Alpha_L_fucos: Alpha- 82.6 9.4 0.0002 41.4 10.6 22 120-141 140-161 (346)
77 PF11941 DUF3459: Domain of un 81.3 4.7 0.0001 34.2 6.3 56 559-634 34-89 (89)
78 TIGR02456 treS_nterm trehalose 80.1 19 0.0004 41.6 12.4 33 190-222 167-199 (539)
79 PLN02877 alpha-amylase/limit d 79.8 24 0.00053 43.3 13.6 58 192-251 530-596 (970)
80 PLN02808 alpha-galactosidase 79.2 0.72 1.6E-05 50.7 0.6 55 405-462 328-383 (386)
81 KOG3738 Predicted polypeptide 78.7 1.1 2.4E-05 48.7 1.8 75 491-573 438-513 (559)
82 PRK03705 glycogen debranching 75.9 20 0.00043 42.5 11.1 33 190-222 305-338 (658)
83 PLN02692 alpha-galactosidase 73.2 1.4 3E-05 48.9 0.7 55 405-462 352-408 (412)
84 KOG3738 Predicted polypeptide 71.0 3 6.5E-05 45.6 2.6 50 493-548 482-532 (559)
85 PF01791 DeoC: DeoC/LacD famil 70.6 24 0.00053 35.9 9.1 50 201-250 147-200 (236)
86 TIGR02102 pullulan_Gpos pullul 70.2 40 0.00086 42.3 12.2 56 191-248 612-668 (1111)
87 PLN02229 alpha-galactosidase 68.2 2 4.4E-05 47.8 0.6 56 405-463 361-418 (427)
88 TIGR01370 cysRS possible cyste 67.4 92 0.002 33.5 12.9 35 189-223 136-170 (315)
89 KOG3737 Predicted polypeptide 67.0 3.4 7.4E-05 45.0 2.0 75 460-548 491-577 (603)
90 PLN03244 alpha-amylase; Provis 64.6 14 0.0003 44.3 6.5 90 118-222 441-533 (872)
91 COG1523 PulA Type II secretory 61.1 64 0.0014 38.4 11.2 32 190-222 328-361 (697)
92 PF06964 Alpha-L-AF_C: Alpha-L 60.7 35 0.00077 33.0 7.7 30 563-592 100-129 (177)
93 COG1649 Uncharacterized protei 60.4 24 0.00052 39.3 7.1 121 120-252 117-272 (418)
94 TIGR02100 glgX_debranch glycog 59.4 42 0.00092 40.0 9.4 34 190-223 310-344 (688)
95 cd02875 GH18_chitobiase Chitob 58.4 61 0.0013 35.4 9.8 57 195-251 93-157 (358)
96 PF00128 Alpha-amylase: Alpha 58.3 19 0.00041 37.0 5.7 59 189-249 137-196 (316)
97 PF13199 Glyco_hydro_66: Glyco 57.9 34 0.00073 39.7 8.0 274 31-360 98-392 (559)
98 PRK09441 cytoplasmic alpha-amy 56.0 28 0.00061 39.4 7.0 52 190-243 202-254 (479)
99 KOG3111 D-ribulose-5-phosphate 55.3 13 0.00028 37.1 3.5 27 119-145 100-126 (224)
100 PRK06852 aldolase; Validated 55.2 71 0.0015 34.2 9.3 48 201-250 189-237 (304)
101 cd06414 GH25_LytC-like The Lyt 53.3 12 0.00025 37.0 3.0 75 45-142 62-137 (191)
102 KOG3736 Polypeptide N-acetylga 53.3 9 0.00019 44.3 2.4 51 491-546 461-512 (578)
103 cd02931 ER_like_FMN Enoate red 52.9 51 0.0011 36.3 8.2 81 48-140 138-227 (382)
104 smart00632 Aamy_C Aamy_C domai 52.8 1E+02 0.0022 25.9 8.3 62 557-634 10-77 (81)
105 PF07302 AroM: AroM protein; 51.2 25 0.00054 35.9 5.0 142 49-250 66-209 (221)
106 cd06522 GH25_AtlA-like AtlA is 51.1 16 0.00036 36.0 3.7 67 46-141 63-133 (192)
107 PRK14510 putative bifunctional 50.2 99 0.0022 39.4 11.0 55 191-245 313-368 (1221)
108 cd02803 OYE_like_FMN_family Ol 50.1 2E+02 0.0043 30.6 12.0 81 48-140 129-217 (327)
109 cd03465 URO-D_like The URO-D _ 49.8 65 0.0014 34.1 8.3 50 65-138 176-228 (330)
110 KOG0470 1,4-alpha-glucan branc 49.3 43 0.00093 39.6 7.0 32 191-222 372-404 (757)
111 PF14488 DUF4434: Domain of un 47.8 38 0.00083 32.8 5.5 74 47-140 14-89 (166)
112 PF02571 CbiJ: Precorrin-6x re 47.4 1.2E+02 0.0025 31.5 9.4 62 190-251 70-138 (249)
113 cd06416 GH25_Lys1-like Lys-1 i 47.2 14 0.00031 36.4 2.5 23 119-141 111-133 (196)
114 KOG3340 Alpha-L-fucosidase [Ca 46.8 25 0.00055 37.7 4.3 22 120-141 152-173 (454)
115 TIGR01463 mtaA_cmuA methyltran 46.7 69 0.0015 34.3 7.9 51 64-138 187-240 (340)
116 PRK13523 NADPH dehydrogenase N 46.7 54 0.0012 35.5 7.1 73 48-138 130-214 (337)
117 PF00016 RuBisCO_large: Ribulo 46.4 42 0.00092 36.0 6.0 50 202-251 32-88 (309)
118 PF03102 NeuB: NeuB family; I 45.6 44 0.00095 34.6 5.8 17 119-135 57-73 (241)
119 PF02055 Glyco_hydro_30: O-Gly 45.4 68 0.0015 36.7 7.9 54 556-634 440-493 (496)
120 TIGR03326 rubisco_III ribulose 45.3 40 0.00088 37.6 5.9 50 202-251 162-218 (412)
121 PRK13840 sucrose phosphorylase 44.3 25 0.00054 40.1 4.2 57 191-247 164-231 (495)
122 PRK08883 ribulose-phosphate 3- 44.1 3.6E+02 0.0078 27.3 12.5 45 206-255 74-118 (220)
123 cd00465 URO-D_CIMS_like The UR 44.1 91 0.002 32.6 8.2 53 64-138 151-206 (306)
124 cd08207 RLP_NonPhot Ribulose b 43.0 42 0.00091 37.4 5.6 51 202-252 161-218 (406)
125 TIGR03332 salvage_mtnW 2,3-dik 42.7 42 0.00092 37.4 5.5 51 202-252 157-214 (407)
126 cd04735 OYE_like_4_FMN Old yel 41.8 1E+02 0.0022 33.5 8.3 75 47-139 131-223 (353)
127 PRK08227 autoinducer 2 aldolas 41.2 1.7E+02 0.0036 30.8 9.4 41 201-250 159-199 (264)
128 cd08148 RuBisCO_large Ribulose 41.1 45 0.00097 36.6 5.4 51 202-252 145-202 (366)
129 COG3469 Chitinase [Carbohydrat 40.3 30 0.00064 36.0 3.5 55 198-252 119-180 (332)
130 PRK06769 hypothetical protein; 40.3 45 0.00098 32.2 4.8 21 119-139 32-52 (173)
131 cd08209 RLP_DK-MTP-1-P-enolase 40.2 47 0.001 36.8 5.4 50 202-251 142-198 (391)
132 cd06522 GH25_AtlA-like AtlA is 39.6 3.8E+02 0.0081 26.3 11.3 19 120-138 44-62 (192)
133 TIGR03569 NeuB_NnaB N-acetylne 39.5 82 0.0018 34.1 7.0 17 118-134 76-92 (329)
134 TIGR03852 sucrose_gtfA sucrose 39.0 33 0.00072 38.9 4.1 32 191-222 160-191 (470)
135 cd08213 RuBisCO_large_III Ribu 38.6 53 0.0012 36.6 5.5 50 202-251 149-205 (412)
136 cd08206 RuBisCO_large_I_II_III 38.3 59 0.0013 36.3 5.8 51 202-252 150-207 (414)
137 COG1830 FbaB DhnA-type fructos 37.1 2.4E+02 0.0053 29.6 9.7 44 201-251 167-210 (265)
138 cd06546 GH18_CTS3_chitinase GH 36.9 3.1E+02 0.0068 28.4 10.7 53 198-252 97-150 (256)
139 cd02933 OYE_like_FMN Old yello 36.8 4.6E+02 0.01 28.3 12.4 78 48-137 140-224 (338)
140 PRK09549 mtnW 2,3-diketo-5-met 36.6 67 0.0015 35.8 5.9 51 202-252 152-209 (407)
141 KOG3737 Predicted polypeptide 36.5 21 0.00046 39.1 1.9 58 493-564 489-547 (603)
142 cd08212 RuBisCO_large_I Ribulo 36.4 63 0.0014 36.5 5.7 50 202-251 163-219 (450)
143 cd08210 RLP_RrRLP Ribulose bis 36.3 75 0.0016 34.9 6.2 51 201-251 142-199 (364)
144 PF05913 DUF871: Bacterial pro 35.7 85 0.0018 34.4 6.5 38 207-252 83-120 (357)
145 cd04733 OYE_like_2_FMN Old yel 35.6 1.3E+02 0.0029 32.3 8.0 73 48-138 137-223 (338)
146 PF02449 Glyco_hydro_42: Beta- 35.5 65 0.0014 35.1 5.6 61 50-139 7-68 (374)
147 PRK10605 N-ethylmaleimide redu 35.2 1.6E+02 0.0034 32.3 8.4 74 48-139 147-233 (362)
148 KOG2672 Lipoate synthase [Coen 35.0 55 0.0012 34.5 4.5 31 190-226 138-168 (360)
149 cd08208 RLP_Photo Ribulose bis 34.5 62 0.0014 36.2 5.2 50 202-251 178-234 (424)
150 PRK04208 rbcL ribulose bisopho 34.4 77 0.0017 36.0 6.0 50 202-251 178-234 (468)
151 PTZ00170 D-ribulose-5-phosphat 33.6 5.2E+02 0.011 26.2 13.0 45 206-254 81-125 (228)
152 cd02932 OYE_YqiM_FMN Old yello 33.6 1.6E+02 0.0035 31.6 8.2 73 48-138 142-228 (336)
153 COG1850 RbcL Ribulose 1,5-bisp 33.2 1.1E+02 0.0023 33.9 6.5 47 205-251 176-229 (429)
154 cd08577 PI-PLCc_GDPD_SF_unchar 32.7 93 0.002 31.8 5.8 21 120-140 187-207 (228)
155 cd06545 GH18_3CO4_chitinase Th 32.6 3.1E+02 0.0067 28.0 9.8 50 199-251 85-138 (253)
156 cd02930 DCR_FMN 2,4-dienoyl-Co 32.4 1.5E+02 0.0032 32.2 7.7 73 48-138 125-211 (353)
157 COG1663 LpxK Tetraacyldisaccha 32.4 1.6E+02 0.0034 32.1 7.6 19 120-138 66-84 (336)
158 cd00599 GH25_muramidase Endo-N 32.0 21 0.00045 34.7 1.0 65 52-142 63-129 (186)
159 cd06415 GH25_Cpl1-like Cpl-1 l 32.0 40 0.00086 33.4 3.0 64 50-140 64-130 (196)
160 COG1306 Uncharacterized conser 31.9 2E+02 0.0043 30.8 8.0 36 187-222 183-218 (400)
161 PF01183 Glyco_hydro_25: Glyco 31.7 58 0.0012 31.5 4.0 73 44-141 55-130 (181)
162 CHL00040 rbcL ribulose-1,5-bis 31.1 87 0.0019 35.7 5.7 50 202-251 185-241 (475)
163 PRK08745 ribulose-phosphate 3- 30.8 5.9E+02 0.013 25.9 12.3 107 51-255 14-122 (223)
164 TIGR00060 L18_bact ribosomal p 30.8 72 0.0016 29.2 4.1 51 51-134 64-114 (114)
165 PRK13398 3-deoxy-7-phosphohept 30.5 1.8E+02 0.004 30.4 7.7 18 118-135 78-95 (266)
166 cd06523 GH25_PlyB-like PlyB is 30.4 75 0.0016 30.9 4.6 66 44-140 58-124 (177)
167 cd04734 OYE_like_3_FMN Old yel 29.9 2.5E+02 0.0054 30.4 8.9 65 48-130 129-204 (343)
168 cd06415 GH25_Cpl1-like Cpl-1 l 29.9 5.4E+02 0.012 25.2 12.2 19 120-138 40-58 (196)
169 PRK12313 glycogen branching en 29.5 1.8E+02 0.004 34.3 8.4 78 556-638 538-629 (633)
170 cd02874 GH18_CFLE_spore_hydrol 29.0 1.3E+02 0.0027 31.9 6.4 55 196-250 85-144 (313)
171 PRK09441 cytoplasmic alpha-amy 29.0 2.2E+02 0.0049 32.2 8.7 67 556-634 407-478 (479)
172 PF09260 DUF1966: Domain of un 28.3 2.9E+02 0.0064 24.1 7.4 60 561-628 11-73 (91)
173 COG3669 Alpha-L-fucosidase [Ca 28.3 2.7E+02 0.0058 31.0 8.5 23 120-142 103-125 (430)
174 PRK12858 tagatose 1,6-diphosph 27.9 4.7E+02 0.01 28.5 10.5 49 201-249 185-247 (340)
175 TIGR03128 RuMP_HxlA 3-hexulose 27.5 3.1E+02 0.0068 26.8 8.6 18 120-137 91-108 (206)
176 smart00642 Aamy Alpha-amylase 27.3 1.1E+02 0.0024 29.5 5.1 20 118-137 70-89 (166)
177 PRK06233 hypothetical protein; 27.2 3E+02 0.0065 30.2 9.1 37 45-82 157-196 (372)
178 PF10726 DUF2518: Protein of f 27.0 62 0.0013 30.7 3.1 58 3-71 44-112 (145)
179 cd08607 GDPD_GDE5 Glycerophosp 27.0 1E+02 0.0022 32.3 5.1 17 206-222 274-290 (290)
180 COG1902 NemA NADH:flavin oxido 26.6 2.3E+02 0.0049 31.2 7.9 76 47-140 136-225 (363)
181 cd06549 GH18_trifunctional GH1 26.6 1.7E+02 0.0036 31.0 6.7 56 195-250 85-145 (298)
182 PRK08255 salicylyl-CoA 5-hydro 26.3 2.2E+02 0.0048 34.4 8.4 74 48-139 539-626 (765)
183 cd06413 GH25_muramidase_1 Unch 26.2 45 0.00098 32.8 2.2 23 120-142 112-135 (191)
184 PF03498 CDtoxinA: Cytolethal 25.9 43 0.00092 32.1 1.9 57 483-548 52-113 (150)
185 PRK13397 3-deoxy-7-phosphohept 25.8 4.1E+02 0.0089 27.7 9.2 38 206-250 92-129 (250)
186 cd06544 GH18_narbonin Narbonin 25.5 2.3E+02 0.005 29.4 7.4 44 199-243 99-146 (253)
187 cd08211 RuBisCO_large_II Ribul 24.9 1.3E+02 0.0027 34.0 5.6 50 202-252 175-231 (439)
188 PRK08005 epimerase; Validated 24.9 7.3E+02 0.016 25.1 12.2 107 51-255 11-118 (210)
189 CHL00139 rpl18 ribosomal prote 24.8 1.1E+02 0.0024 27.7 4.2 52 50-134 58-109 (109)
190 PRK09250 fructose-bisphosphate 24.8 4.4E+02 0.0095 28.9 9.4 50 201-250 218-288 (348)
191 cd02871 GH18_chitinase_D-like 24.7 2.3E+02 0.0049 30.2 7.4 55 198-252 95-155 (312)
192 PRK10558 alpha-dehydro-beta-de 24.6 4.9E+02 0.011 27.0 9.6 45 206-251 33-77 (256)
193 PF00834 Ribul_P_3_epim: Ribul 24.3 99 0.0021 31.0 4.2 27 119-145 93-119 (201)
194 cd08605 GDPD_GDE5_like_1_plant 24.0 1.2E+02 0.0025 31.7 4.9 17 206-222 266-282 (282)
195 PRK05402 glycogen branching en 24.0 2.2E+02 0.0049 34.2 7.8 53 200-252 266-337 (726)
196 cd08205 RuBisCO_IV_RLP Ribulos 23.6 1.5E+02 0.0032 32.6 5.8 49 202-250 148-203 (367)
197 cd06548 GH18_chitinase The GH1 23.6 1.7E+02 0.0037 31.1 6.2 53 199-251 111-181 (322)
198 PRK07534 methionine synthase I 23.6 2.2E+02 0.0048 30.8 7.1 55 193-251 124-178 (336)
199 TIGR03586 PseI pseudaminic aci 23.4 2.5E+02 0.0054 30.4 7.3 15 120-134 79-93 (327)
200 COG2898 Uncharacterized conser 22.9 79 0.0017 36.5 3.5 33 101-138 261-293 (538)
201 PRK14582 pgaB outer membrane N 22.6 7.5E+02 0.016 29.6 11.5 35 187-221 431-466 (671)
202 COG0407 HemE Uroporphyrinogen- 22.4 2.1E+02 0.0045 31.4 6.5 51 65-138 197-248 (352)
203 cd08583 PI-PLCc_GDPD_SF_unchar 22.3 1.8E+02 0.0039 29.4 5.8 18 206-223 219-236 (237)
204 COG3325 ChiA Chitinase [Carboh 22.3 2.2E+02 0.0048 31.9 6.6 54 198-251 152-223 (441)
205 TIGR02401 trehalose_TreY malto 21.6 1.8E+02 0.0039 35.5 6.3 49 189-238 222-272 (825)
206 PRK14511 maltooligosyl trehalo 21.6 1.8E+02 0.0039 35.7 6.3 78 46-139 13-90 (879)
207 PRK13475 ribulose bisphosphate 21.5 1.7E+02 0.0036 33.2 5.6 50 201-252 176-232 (443)
208 COG2200 Rtn c-di-GMP phosphodi 21.4 4.9E+02 0.011 26.8 8.9 45 206-250 164-213 (256)
209 PRK10785 maltodextrin glucosid 21.3 2.3E+02 0.0049 33.3 7.0 59 557-628 540-598 (598)
210 COG3534 AbfA Alpha-L-arabinofu 20.8 2.2E+02 0.0047 32.2 6.2 71 563-638 412-500 (501)
211 cd04469 S1_Hex1 S1_Hex1: Hex1, 20.8 1.1E+02 0.0025 25.8 3.2 37 71-129 5-42 (75)
212 COG3453 Uncharacterized protei 20.3 4.4E+02 0.0094 24.6 7.0 47 207-254 52-98 (130)
No 1
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=7.8e-149 Score=1218.56 Aligned_cols=614 Identities=76% Similarity=1.279 Sum_probs=573.5
Q ss_pred cccccCCCCCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCC
Q 006587 24 SISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGR 103 (639)
Q Consensus 24 ~~~~~~~~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~ 103 (639)
...++++++|+|||||||||+.|.|+|+|++|+++||+|+++|+++||+||+|||||+...+.+.|+++.|.+.+|++|+
T Consensus 19 ~~~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~Gr 98 (633)
T PLN02899 19 IGASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGR 98 (633)
T ss_pred ccccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCC
Confidence 34567889999999999999999999999999999999999999999999999999998766677778888889999999
Q ss_pred cccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccc
Q 006587 104 MIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW 183 (639)
Q Consensus 104 l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~ 183 (639)
++||++|||++++|+|||+||||||+||||||||+++|+++||+..++||+|+..|+.|.+++++|+++||+.+..+|.|
T Consensus 99 LvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w 178 (633)
T PLN02899 99 PIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAW 178 (633)
T ss_pred CccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCCCChhhhhh
Q 006587 184 MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKE 263 (639)
Q Consensus 184 ~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~g~~~~~~~a~~ 263 (639)
++.+|+.+|.++|++|+||++++++||+|||||||+|+|+++.+++++|++|++||+++||||+||+|+|...+|.|+..
T Consensus 179 ~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~~~ey~~ms~AL~aTGRPIvySLspG~~~~p~wa~~ 258 (633)
T PLN02899 179 MSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFDLEEITYVSEVLKELDRPIVYSLSPGTSATPTMAKE 258 (633)
T ss_pred CCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCChHHHHHHHHHHHHhCCCeEEEecCCcccchhhhhh
Confidence 99999999999999999999999999999999999999988778889999999999999999999999988777888888
Q ss_pred hccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHH
Q 006587 264 VSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRT 343 (639)
Q Consensus 264 ~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt 343 (639)
+.+++|||||++||+|.|.++..+++..+.|+.++.++++|++|++|||||||+||.+++++.|.|+||.++||.+|+||
T Consensus 259 v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rT 338 (633)
T PLN02899 259 VSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKT 338 (633)
T ss_pred hhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHHH
Confidence 88999999999999999999999999988888766777777777899999999999998877788899999999999999
Q ss_pred HHHHHHHhcCCceecCCCCCCCHHHHhhccChhhhhhccCCCCCCCcceeecccCCCCccccCCCCCcccccccceeecc
Q 006587 344 QMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGL 423 (639)
Q Consensus 344 ~~tlWa~~~sPLiig~Dl~~l~~~~l~lLtN~eviainQd~~~~~~~~~~~~~~~~~~~~~n~~s~~~~~~s~~~~~lgL 423 (639)
||+||||++||||+|+||++|++++++||||+||||||||+.+++++++++.+|..+....-+.+ ....+.+.+.|||
T Consensus 339 hfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 416 (633)
T PLN02899 339 QMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFPYVTSTRRNKKKSHSQHS--TGVGKSDPSVLGL 416 (633)
T ss_pred HHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeeeeEecccccccccccccc--ccCCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999987622211111111 4556778899999
Q ss_pred ccCCCCCCCCccccccccccceEEeeccCCCCCccceeeccCCCcccccccccccccccceEEEEeccCCCcccccCCCc
Q 006587 424 TSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKW 503 (639)
Q Consensus 424 ~~c~~~~~d~Wt~~~~~~~~~~i~~~~~~~~~~~~~~Cl~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~~CLda~~~~ 503 (639)
++|++++++.|++++.++..++|||+....+++..+|||+++.+.+++|.+...+|++|+++|+.++..++.|||+++++
T Consensus 417 ~~c~~~~~~~w~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 496 (633)
T PLN02899 417 TSCKDSKANGWSIRSLDKDLDQICWNEKMGRRGEEPLCLYKTKPLLASDEEIIHNSEYQGKLHLLTSDGGELCLDASPKQ 496 (633)
T ss_pred EecCCCCCCceeEEecCCCcceeeccccccccCCCCeeeecccCCcccchhhhhcccccceEEeeeccccChhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeccCCCCCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCeEE
Q 006587 504 KLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKTLI 583 (639)
Q Consensus 504 ~~t~~~~~~~~~~~C~~~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~dG~~~ValfN~~~~~~~i 583 (639)
++|+++.++.+|++|++++||+|+||+||+|++.|||||++|+.....+.+.+.++|++.+.+|++||||||++.+.++|
T Consensus 497 ~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~y~~~fnl~~~~~~~ 576 (633)
T PLN02899 497 KRTSKDFRSGSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEIYVAFFNLNQEKTKI 576 (633)
T ss_pred CcCHhHhhccccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCCCccEEEEEEecCccceeE
Confidence 99999999999999999999999999999999999999999998777766778899999999999999999999999999
Q ss_pred EEecchhhhcCCC-CCCCCCeeeEEeccCCCccceeccEEEEEEcCccEEEEEEecC
Q 006587 584 STKISDLAKALPG-KNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFVLNCD 639 (639)
Q Consensus 584 t~~l~~lG~~l~~-~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~Hg~~l~~l~~~ 639 (639)
++.+++|...|++ +......|+.+|||+++++|.+++++++.|++|||+||.|+|.
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~c~~~e~w~~~~~~~~~~~~~~~v~~hg~~~~~~~c~ 633 (633)
T PLN02899 577 SAKISDLAKALPGSKNLRTSSCTGHEVWSGKDFGVIKDSISATVEIHGCALFVLHCS 633 (633)
T ss_pred EEEhhHhHhhccccccccccccceEEeccCCCcccccccEEEEeecCceEEEEEeCC
Confidence 9999999987776 4555679999999999999999999999999999999999985
No 2
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=3.4e-96 Score=787.57 Aligned_cols=361 Identities=26% Similarity=0.452 Sum_probs=312.3
Q ss_pred cCCCCCCCCceEecCcccccccCCHHHHHHHHHH-HHhccccCCceEEEecccccccccCCccccCCCcccccCCCCccc
Q 006587 28 AVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (639)
Q Consensus 28 ~~~~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~-~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~p 106 (639)
.++++|+|||||||||+.|+|+|+|+.|+++||. +++||+++||+||+|||||+... ||++|+|+|
T Consensus 55 ~~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~l~~ 121 (427)
T PLN02229 55 LNNGLARTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLK-------------RDSKGQLVP 121 (427)
T ss_pred ccCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCC-------------cCCCCCEEE
Confidence 4578999999999999999999999999999996 57899999999999999999753 578899999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCC
Q 006587 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (639)
Q Consensus 107 d~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~ 186 (639)
|++|||+ |||+|+||||+||||||||+++|+.+|+..+++
T Consensus 122 d~~rFP~-----G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS----------------------------------- 161 (427)
T PLN02229 122 DPKTFPS-----GIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGS----------------------------------- 161 (427)
T ss_pred ChhhcCC-----cHHHHHHHHHHCCCceEEeccCCCcccCCCCCC-----------------------------------
Confidence 9999998 999999999999999999999999888643332
Q ss_pred CceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCC-hHHHHHHHHHHHhcCCCeEEEcCCCCC-CChhhhhhh
Q 006587 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSPGTG-VTPAMAKEV 264 (639)
Q Consensus 187 ~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~-~~~~~~m~~al~~~Gr~i~lsls~g~~-~~~~~a~~~ 264 (639)
..|++.++++||+|||||||+|+|+....+ .++|.+|++||+++||||+||+|++.. .+..| .
T Consensus 162 ------------~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w---~ 226 (427)
T PLN02229 162 ------------LFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALW---A 226 (427)
T ss_pred ------------ccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHH---H
Confidence 235677799999999999999999875544 456999999999999999999997443 33334 3
Q ss_pred ccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHH
Q 006587 265 SGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQ 344 (639)
Q Consensus 265 ~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt~ 344 (639)
.+++|||||++||+|.|.++.++++....|+.+ +| ||+|||||||+||. .+||.+|+|||
T Consensus 227 ~~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~-----ag--PG~wnDpDML~vGn-------------~glT~~E~rth 286 (427)
T PLN02229 227 GKVGNSWRTTDDINDTWASMTTIADLNNKWAAY-----AG--PGGWNDPDMLEVGN-------------GGMTYEEYRGH 286 (427)
T ss_pred HhhcCeeeccCCcccccccHHHHHHHHHHHHhh-----cC--CCCCCCCCeeeeCC-------------CCCCHHHHHHH
Confidence 578999999999999999999999988888754 33 48999999999994 25999999999
Q ss_pred HHHHHHhcCCceecCCCCCCCHHHHhhccChhhhhhccCCCCCCCcceeecccCCCCccccCCCCCcccccccceeeccc
Q 006587 345 MTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGLT 424 (639)
Q Consensus 345 ~tlWa~~~sPLiig~Dl~~l~~~~l~lLtN~eviainQd~~~~~~~~~~~~~~~~~~~~~n~~s~~~~~~s~~~~~lgL~ 424 (639)
||||||++||||+|+||++|++++++||||+||||||||+++.+...+ ...
T Consensus 287 fsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg~~v-~~~---------------------------- 337 (427)
T PLN02229 287 FSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQGRKI-QAN---------------------------- 337 (427)
T ss_pred HHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhcccccccCcEEE-Eec----------------------------
Confidence 999999999999999999999999999999999999999864333100 000
Q ss_pred cCCCCCCCCccccccccccceEEeeccCCCCCccceeeccCCCcccccccccccccccceEEEEeccCCCcccccCCCcc
Q 006587 425 SCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKWK 504 (639)
Q Consensus 425 ~c~~~~~d~Wt~~~~~~~~~~i~~~~~~~~~~~~~~Cl~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~~CLda~~~~~ 504 (639)
T Consensus 338 -------------------------------------------------------------------------------- 337 (427)
T PLN02229 338 -------------------------------------------------------------------------------- 337 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceeccCCCCCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCeEEE
Q 006587 505 LTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKTLIS 584 (639)
Q Consensus 505 ~t~~~~~~~~~~~C~~~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~dG~~~ValfN~~~~~~~it 584 (639)
......+||++++++|+++|+|||+++++++++
T Consensus 338 -----------------------------------------------~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v~ 370 (427)
T PLN02229 338 -----------------------------------------------GKNGCQQVWAGPLSGDRLVVALWNRCSEPATIT 370 (427)
T ss_pred -----------------------------------------------CCCCceEEEEEECCCCCEEEEEEeCCCCCEEEE
Confidence 001247899999999999999999999999999
Q ss_pred EecchhhhcCCCCCCCCCeeeEEeccCCCccc-eeccEEEEEEcCccEEEEEEec
Q 006587 585 TKISDLAKALPGKNLNGASCKCREVWSAKDYG-VLQQTLSTAVGMHGCALFVLNC 638 (639)
Q Consensus 585 ~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g-~~~~~~s~~v~~Hg~~l~~l~~ 638 (639)
++|++||+. + ...|+|||||+|+++| .++++|+++|+||||+||||+|
T Consensus 371 v~~~~lGl~--~----~~~~~VrDLW~~~dlg~~~~~~~~~~v~~Hg~~l~rl~~ 419 (427)
T PLN02229 371 ASWDVIGLE--S----SISVSVRDLWKHKDLSENVVGSFGAQVDAHDCHMYIFTP 419 (427)
T ss_pred EEHHHcCCC--C----CCceEEEECCCCCccCccccceEEEEECCCeEEEEEEec
Confidence 999999973 2 2469999999999997 4678999999999999999997
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=1.8e-95 Score=778.88 Aligned_cols=361 Identities=25% Similarity=0.456 Sum_probs=315.4
Q ss_pred ccCCCCCCCCceEecCcccccccCCHHHHHHHHHH-HHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcc
Q 006587 27 EAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEI-ISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (639)
Q Consensus 27 ~~~~~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~-~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~ 105 (639)
..++++|+|||||||||++|+|+|+|+.|+++||. ++.+|+++||+||+|||||+... +|++|+|+
T Consensus 47 ~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-------------rd~~G~~~ 113 (412)
T PLN02692 47 LLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-------------RDEKGNLV 113 (412)
T ss_pred cccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-------------CCCCCCee
Confidence 34579999999999999999999999999999995 57899999999999999999763 57889999
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccC
Q 006587 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (639)
Q Consensus 106 pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~ 185 (639)
||++|||+ |||+||||||+||||||||+++|..+|+.
T Consensus 114 ~d~~kFP~-----G~k~ladyiH~~GLKfGIy~d~G~~tC~~-------------------------------------- 150 (412)
T PLN02692 114 PKKSTFPS-----GIKALADYVHSKGLKLGIYSDAGYFTCSK-------------------------------------- 150 (412)
T ss_pred eChhhcCC-----cHHHHHHHHHHCCCceEEEecCCccccCC--------------------------------------
Confidence 99999998 99999999999999999999999877631
Q ss_pred CCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCCh-HHHHHHHHHHHhcCCCeEEEcCCCCCCCh-hhhhh
Q 006587 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDI-NEISFVSEVLKELDRPIVYSLSPGTGVTP-AMAKE 263 (639)
Q Consensus 186 ~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~-~~~~~m~~al~~~Gr~i~lsls~g~~~~~-~~a~~ 263 (639)
.+|+.+.|+++++++||+|||||||+|+|+.+..++ ++|++|++||+++||||+||+|++....| .|+
T Consensus 151 --------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~-- 220 (412)
T PLN02692 151 --------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWG-- 220 (412)
T ss_pred --------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhh--
Confidence 124568899999999999999999999998655443 67999999999999999999997554333 343
Q ss_pred hccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHH
Q 006587 264 VSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRT 343 (639)
Q Consensus 264 ~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt 343 (639)
.+++|+|||++||++.|.++.++++....|+.+ ++ ||+|||||||+||. .+||.+|+||
T Consensus 221 -~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~~-----ag--PG~wnDpDML~VGn-------------~glT~~E~rT 279 (412)
T PLN02692 221 -SKVGNSWRTTNDISDTWDSMISRADMNEVYAEL-----AR--PGGWNDPDMLEVGN-------------GGMTKDEYIV 279 (412)
T ss_pred -hhcCCccccccccccchHhHHHHHHHHHHHhhc-----cC--CCCCCCCCeEeECC-------------CCCCHHHHHH
Confidence 478999999999999999999999887777643 33 48999999999994 3699999999
Q ss_pred HHHHHHHhcCCceecCCCCCCCHHHHhhccChhhhhhccCCCCCCCcceeecccCCCCccccCCCCCcccccccceeecc
Q 006587 344 QMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVLGL 423 (639)
Q Consensus 344 ~~tlWa~~~sPLiig~Dl~~l~~~~l~lLtN~eviainQd~~~~~~~~~~~~~~~~~~~~~n~~s~~~~~~s~~~~~lgL 423 (639)
|||||||++||||+|+||+++++++++||||+||||||||+++.+...
T Consensus 280 hfsLWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~-------------------------------- 327 (412)
T PLN02692 280 HFSIWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKK-------------------------------- 327 (412)
T ss_pred HHHHHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEE--------------------------------
Confidence 999999999999999999999999999999999999999986433310
Q ss_pred ccCCCCCCCCccccccccccceEEeeccCCCCCccceeeccCCCcccccccccccccccceEEEEeccCCCcccccCCCc
Q 006587 424 TSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKW 503 (639)
Q Consensus 424 ~~c~~~~~d~Wt~~~~~~~~~~i~~~~~~~~~~~~~~Cl~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~~CLda~~~~ 503 (639)
|.
T Consensus 328 ----------------------v~-------------------------------------------------------- 329 (412)
T PLN02692 328 ----------------------VR-------------------------------------------------------- 329 (412)
T ss_pred ----------------------EE--------------------------------------------------------
Confidence 00
Q ss_pred cccccccccceeccCCCCCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCeEE
Q 006587 504 KLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKTLI 583 (639)
Q Consensus 504 ~~t~~~~~~~~~~~C~~~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~dG~~~ValfN~~~~~~~i 583 (639)
.....+||++++++|+++|+|||+++.+++|
T Consensus 330 -------------------------------------------------~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i 360 (412)
T PLN02692 330 -------------------------------------------------MEGDLEIWAGPLSGYRVALLLLNRGPWRNSI 360 (412)
T ss_pred -------------------------------------------------ecCCeEEEEEECCCCCEEEEEEECCCCCEEE
Confidence 0134789999999999999999999999999
Q ss_pred EEecchhhhcCCCCCCCCCeeeEEeccCCCccc-eeccEEEEEEcCccEEEEEEecC
Q 006587 584 STKISDLAKALPGKNLNGASCKCREVWSAKDYG-VLQQTLSTAVGMHGCALFVLNCD 639 (639)
Q Consensus 584 t~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g-~~~~~~s~~v~~Hg~~l~~l~~~ 639 (639)
+++|++||+. + ...++|||||+|+++| .++++|+++||||||+||||+|.
T Consensus 361 ~~~~~~lgl~--~----~~~~~vrDLW~~~~~g~~~~~~~~~~v~~Hg~~l~rl~~~ 411 (412)
T PLN02692 361 TANWDDIGIP--A----NSIVEARDLWEHKTLKQHFVGNLTATVDSHACKMYILKPI 411 (412)
T ss_pred EEeHHHhCCC--C----CCceEEEECCCCCccCccccceEEEEECCceEEEEEEecC
Confidence 9999999973 2 2469999999999998 46789999999999999999983
No 4
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=3.4e-95 Score=775.44 Aligned_cols=363 Identities=26% Similarity=0.485 Sum_probs=318.2
Q ss_pred ccccCCCCCCCCceEecCcccccccCCHHHHHHHHHHH-HhccccCCceEEEecccccccccCCccccCCCcccccCCCC
Q 006587 25 ISEAVPVRASSPPRGWNSYDSFCWTISEEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGR 103 (639)
Q Consensus 25 ~~~~~~~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~~-a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~ 103 (639)
....++++++|||||||||++|+|+|+|++|+++||.| +.||+++||+||+|||||+... ||++|+
T Consensus 21 ~~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~-------------rd~~G~ 87 (386)
T PLN02808 21 RNLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELK-------------RDSQGN 87 (386)
T ss_pred hhcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCC-------------cCCCCC
Confidence 34557899999999999999999999999999999987 6799999999999999999763 578899
Q ss_pred cccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccc
Q 006587 104 MIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW 183 (639)
Q Consensus 104 l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~ 183 (639)
|+||++|||+ |||+|+||||+||||||||+++|..+|+.
T Consensus 88 ~~~d~~rFP~-----G~~~lad~iH~~GlkfGiy~~~G~~tC~~------------------------------------ 126 (386)
T PLN02808 88 LVPKASTFPS-----GIKALADYVHSKGLKLGIYSDAGTLTCSK------------------------------------ 126 (386)
T ss_pred EeeChhhcCc-----cHHHHHHHHHHCCCceEEEecCCccccCC------------------------------------
Confidence 9999999998 99999999999999999999999876631
Q ss_pred cCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCC-hHHHHHHHHHHHhcCCCeEEEcCC-CCCCChhhh
Q 006587 184 MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSP-GTGVTPAMA 261 (639)
Q Consensus 184 ~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~-~~~~~~m~~al~~~Gr~i~lsls~-g~~~~~~~a 261 (639)
.+|+.+.|+++++++||+|||||||+|+|+.+..+ .++|.+|++||+++||||+||+|+ |...+..|+
T Consensus 127 ----------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~w~ 196 (386)
T PLN02808 127 ----------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPATWA 196 (386)
T ss_pred ----------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHHHH
Confidence 13556889999999999999999999999865443 457999999999999999999997 434444555
Q ss_pred hhhccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCCCCCCHHHH
Q 006587 262 KEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQ 341 (639)
Q Consensus 262 ~~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~ 341 (639)
.+++|+||++.||++.|.++.++++....|+.+ +| ||+|||||||+||. .+||.+|+
T Consensus 197 ---~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~-----ag--PG~wnDpDML~vGn-------------~glt~~E~ 253 (386)
T PLN02808 197 ---GDIGNSWRTTGDIQDNWDSMTSRADQNDRWASY-----AR--PGGWNDPDMLEVGN-------------GGMTTEEY 253 (386)
T ss_pred ---HhhcCcccccCCcccchhhHHHHHHhhhhhHhh-----cC--CCCCCCCCeeeECC-------------CCCCHHHH
Confidence 467899999999999999999999988877753 33 48999999999994 36999999
Q ss_pred HHHHHHHHHhcCCceecCCCCCCCHHHHhhccChhhhhhccCCCCCCCcceeecccCCCCccccCCCCCcccccccceee
Q 006587 342 RTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTPPHLSEVAESNTHVL 421 (639)
Q Consensus 342 rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lLtN~eviainQd~~~~~~~~~~~~~~~~~~~~~n~~s~~~~~~s~~~~~l 421 (639)
||||+||||++||||||+||++|++++++||+|+||||||||+++.+..
T Consensus 254 rthfsLWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~------------------------------- 302 (386)
T PLN02808 254 RSHFSIWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGK------------------------------- 302 (386)
T ss_pred HHHHHHHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcE-------------------------------
Confidence 9999999999999999999999999999999999999999998542221
Q ss_pred ccccCCCCCCCCccccccccccceEEeeccCCCCCccceeeccCCCcccccccccccccccceEEEEeccCCCcccccCC
Q 006587 422 GLTSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASP 501 (639)
Q Consensus 422 gL~~c~~~~~d~Wt~~~~~~~~~~i~~~~~~~~~~~~~~Cl~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~~CLda~~ 501 (639)
.|.
T Consensus 303 -----------------------~v~------------------------------------------------------ 305 (386)
T PLN02808 303 -----------------------KVK------------------------------------------------------ 305 (386)
T ss_pred -----------------------EEE------------------------------------------------------
Confidence 000
Q ss_pred CccccccccccceeccCCCCCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeCCCCcEEEEEEeCCCCCe
Q 006587 502 KWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEIYVAFFNLNTEKT 581 (639)
Q Consensus 502 ~~~~t~~~~~~~~~~~C~~~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~dG~~~ValfN~~~~~~ 581 (639)
.....+||++++++|+++|+|||++++++
T Consensus 306 ---------------------------------------------------~~~~~~vW~k~L~~g~~aVal~N~~~~~~ 334 (386)
T PLN02808 306 ---------------------------------------------------KDGDLEVWAGPLSKKRVAVVLWNRGSSRA 334 (386)
T ss_pred ---------------------------------------------------ecCCeEEEEEECCCCCEEEEEEECCCCCE
Confidence 01347899999999999999999999999
Q ss_pred EEEEecchhhhcCCCCCCCCCeeeEEeccCCCccceeccEEEEEEcCccEEEEEEecC
Q 006587 582 LISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFVLNCD 639 (639)
Q Consensus 582 ~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~Hg~~l~~l~~~ 639 (639)
+++++|++||+. + ...|+|||||+|+++|.++++++++||||||+||||+|.
T Consensus 335 ~~~~~~~~lgl~--~----~~~~~vrDlWs~~~~g~~~~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 335 TITARWSDIGLN--S----SAVVNARDLWAHSTQSSVKGQLSALVESHACKMYVLTPR 386 (386)
T ss_pred EEEEEHHHhCCC--C----CCceEEEECCCCCccCcccceEEEEECCceEEEEEEeCC
Confidence 999999999973 2 247999999999999999999999999999999999983
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=4.6e-94 Score=758.83 Aligned_cols=350 Identities=60% Similarity=1.131 Sum_probs=307.6
Q ss_pred CceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccc---cCCCcccccCCCCcccCCCCCC
Q 006587 36 PPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV---DSLGFDVIDEWGRMIPDPDRWP 112 (639)
Q Consensus 36 PPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~---~~~~~~~~D~~G~l~pd~~rFP 112 (639)
||||||||++|+|+|||++|+++||+|+++|+++||+||+|||||+...+.+.+. .+.++..||++|+++||++|||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFP 80 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCC
Confidence 8999999999999999999999999889999999999999999999754322110 1123345899999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeec
Q 006587 113 SSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVN 192 (639)
Q Consensus 113 ~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD 192 (639)
++++++|||+||||||+||||||||+++|+.+||+..++||+|..... +.+++++||+.+...|.|++++|..+|
T Consensus 81 s~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~-----g~~~~a~Dia~~~~~c~~~~~~~~~v~ 155 (357)
T PLN03231 81 STTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSN-----GHAWNAKDIALMDQACPWMQQCFVGVN 155 (357)
T ss_pred CCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCccc-----ccccchhhhcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999864211 234678999999999999999998999
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCC-CChHHHHHHHHHHHhcCCCeEEEcCCCCCCChhhhhhhccccceE
Q 006587 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD-LDINEISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMY 271 (639)
Q Consensus 193 ~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~-~~~~~~~~m~~al~~~Gr~i~lsls~g~~~~~~~a~~~~~~an~w 271 (639)
.++|++|+|+++++++||+|||||||+|+|+... ...++|.+|++||+++||||+||||+|...++.++..+.+++|||
T Consensus 156 ~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~~~~~~~~~~i~~~an~W 235 (357)
T PLN03231 156 TSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDGATPGLAARVAQLVNMY 235 (357)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhhhhcCcc
Confidence 9999999999999999999999999999997643 566889999999999999999999997766677888888899999
Q ss_pred EecCCCcCchHhHHHHHHhhhhhhhhhhhcccCC-CCCcccCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 006587 272 RITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGL-QGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAM 350 (639)
Q Consensus 272 Ris~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~-~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~ 350 (639)
||++||++.|+++.++++..+.|+.++...+++. +||+|||||||+||.++.++...|++|+++||.+|+|||||||||
T Consensus 236 R~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam 315 (357)
T PLN03231 236 RVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAV 315 (357)
T ss_pred cccCCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998877765433222211 248999999999998776544456778899999999999999999
Q ss_pred hcCCceecCCCCCCCHHHHhhccChhhhhhccCCCCCCCc
Q 006587 351 AKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEF 390 (639)
Q Consensus 351 ~~sPLiig~Dl~~l~~~~l~lLtN~eviainQd~~~~~~~ 390 (639)
++||||+|+||++|++++++||||+||||||||+++++++
T Consensus 316 ~~SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~~~~ 355 (357)
T PLN03231 316 AKSPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGNRNA 355 (357)
T ss_pred HhCchhhcCCcccCCHHHHHHhcChHHheecCCccccccC
Confidence 9999999999999999999999999999999999998885
No 6
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-79 Score=628.36 Aligned_cols=370 Identities=29% Similarity=0.465 Sum_probs=308.1
Q ss_pred ccccCCCCCCCCceEecCcccccccCC----------HHHHHHHHHHH-HhccccCCceEEEecccccccccCCccccCC
Q 006587 25 ISEAVPVRASSPPRGWNSYDSFCWTIS----------EEEFLQSAEII-SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSL 93 (639)
Q Consensus 25 ~~~~~~~~a~tPPmGWnSW~~~~~~it----------e~~v~~~ad~~-a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~ 93 (639)
.-..+|+|++||||||+||+.|.|+++ |..++++||.| ++++++.||+||+|||||....
T Consensus 22 ~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~--------- 92 (414)
T KOG2366|consen 22 RMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWSEVT--------- 92 (414)
T ss_pred heeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhhhhc---------
Confidence 445788999999999999999999877 99999999987 5799999999999999999874
Q ss_pred CcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccc
Q 006587 94 GFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKD 173 (639)
Q Consensus 94 ~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~d 173 (639)
||..|+++||++|||+ |+++|++|+|++|||||||.+.|..+|+..|+
T Consensus 93 ----Rd~~grLva~~~rFP~-----Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PG----------------------- 140 (414)
T KOG2366|consen 93 ----RDSDGRLVADPSRFPS-----GIKALADYVHSKGLKLGIYSDAGNFTCAGYPG----------------------- 140 (414)
T ss_pred ----cCCccccccChhhccc-----chhhhhhchhhcCCceeeeeccCchhhccCCc-----------------------
Confidence 5788999999999998 99999999999999999999999877754333
Q ss_pred cccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCC-hHHHHHHHHHHHhcCCCeEEEcCC
Q 006587 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLD-INEISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~-~~~~~~m~~al~~~Gr~i~lsls~ 252 (639)
.+.|++.++++||+|||||+|+|.|+...+. ++.|..|++||+++||||+||+|.
T Consensus 141 ------------------------S~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN~tGrpi~ySlC~ 196 (414)
T KOG2366|consen 141 ------------------------SLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALNNTGRPIFYSLCS 196 (414)
T ss_pred ------------------------ccchhhhhhhhhHhhCCcEEeccccccccccccccchhHHHHHhccCCceEEEecc
Confidence 3456778899999999999999999876654 577999999999999999999774
Q ss_pred -CCCCChhh----hhhhccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCC
Q 006587 253 -GTGVTPAM----AKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSN 327 (639)
Q Consensus 253 -g~~~~~~~----a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~ 327 (639)
+...+..+ .+.++.++|.||+.+||.|+|.++..+++....-+. .+...+|| ++|||||||++|+
T Consensus 197 W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd-~~~~~agP--g~WNDpDmL~iGN------- 266 (414)
T KOG2366|consen 197 WPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQD-RIAPLAGP--GGWNDPDMLEIGN------- 266 (414)
T ss_pred CcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhh-hhccccCC--CCCCChhHhhcCC-------
Confidence 32221111 234678999999999999999999998873221111 12223444 8999999999994
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhccChhhhhhccCCCCCCCcceeecccCCCCccccCC
Q 006587 328 EGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINTFSSNNKEFPYIIGTKGNTRKIKVTP 407 (639)
Q Consensus 328 ~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lLtN~eviainQd~~~~~~~~~~~~~~~~~~~~~n~~ 407 (639)
.+||.+|+++||++||++++||++|+||+.++++.+++|+|||+|+||||+++ +++.
T Consensus 267 ------~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplg------iqGr----------- 323 (414)
T KOG2366|consen 267 ------GGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLG------IQGR----------- 323 (414)
T ss_pred ------CCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccc------hhhe-----------
Confidence 46999999999999999999999999999999999999999999999999853 2210
Q ss_pred CCCcccccccceeeccccCCCCCCCCccccccccccceEEeeccCCCCCccceeeccCCCcccccccccccccccceEEE
Q 006587 408 PHLSEVAESNTHVLGLTSCKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHL 487 (639)
Q Consensus 408 s~~~~~~s~~~~~lgL~~c~~~~~d~Wt~~~~~~~~~~i~~~~~~~~~~~~~~Cl~~~~~~~~~~~~~~~~q~~~~~~~i 487 (639)
T Consensus 324 -------------------------------------------------------------------------------- 323 (414)
T KOG2366|consen 324 -------------------------------------------------------------------------------- 323 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCcccccCCCccccccccccceeccCCCCCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeCCCC
Q 006587 488 LASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREG 567 (639)
Q Consensus 488 ~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~dG 567 (639)
|+-- +++..+||.+++++-
T Consensus 324 ------------------------------------------------------~i~~-------e~~~ievw~~pls~~ 342 (414)
T KOG2366|consen 324 ------------------------------------------------------KIVL-------EGDSIEVWSGPLSGK 342 (414)
T ss_pred ------------------------------------------------------eeee-------cCCceEEEeeccCCc
Confidence 0000 123489999999977
Q ss_pred cEEEEEEeCC--CCCeEEE-EecchhhhcCCCCCCCCCeeeEEeccCC-CccceeccEEEEEEcCccEEEEEEecC
Q 006587 568 EIYVAFFNLN--TEKTLIS-TKISDLAKALPGKNLNGASCKCREVWSA-KDYGVLQQTLSTAVGMHGCALFVLNCD 639 (639)
Q Consensus 568 ~~~ValfN~~--~~~~~it-~~l~~lG~~l~~~~~~~~~~~vrDlW~~-~~~g~~~~~~s~~v~~Hg~~l~~l~~~ 639 (639)
+++|+++|+. ..+..|+ +.|..+|+. . ...|+++|||+| .+.+..+++|++.|.|||++||++.|.
T Consensus 343 ~~Ava~lNr~~~~~~~~It~~~l~~~g~~-~-----~~~~~~~dLw~~~~~~~~~~~~i~~~V~phG~~l~~l~~~ 412 (414)
T KOG2366|consen 343 SVAVAFLNRRKTGIPARITAASLRELGLT-N-----PASYTAHDLWSGVLGFLPTKDSISAQVNPHGVVLFVLHPS 412 (414)
T ss_pred eEEEEEecccCCCCCccccHHHHhhcCCC-C-----CceeEeeehhhccccccccCCeEEEEECCCCcEEEEEEec
Confidence 8999999998 5567888 889999972 3 358999999999 456677899999999999999999984
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=1.4e-33 Score=305.06 Aligned_cols=283 Identities=22% Similarity=0.396 Sum_probs=182.5
Q ss_pred CCCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCC
Q 006587 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDR 110 (639)
Q Consensus 31 ~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~r 110 (639)
...++||||||||++|++++||+.++++|+.+ +++||+||+|||||+... .. ..+..|+|+||++|
T Consensus 36 ~~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~----~~~G~e~fviDDGW~~~r-~~---------d~~~~GdW~~~~~k 101 (394)
T PF02065_consen 36 WRDKPPPVGWNSWEAYYFDITEEKILELADAA----AELGYEYFVIDDGWFGGR-DD---------DNAGLGDWEPDPKK 101 (394)
T ss_dssp TTTSS--EEEESHHHHTTG--HHHHHHHHHHH----HHHT-SEEEE-SSSBCTE-ST---------TTSTTSBECBBTTT
T ss_pred cCCCCCceEEEcccccCcCCCHHHHHHHHHHH----HHhCCEEEEEcCcccccc-CC---------CcccCCceeEChhh
Confidence 45688999999999999999999999999976 678999999999999862 11 13457999999999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCcee
Q 006587 111 WPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMS 190 (639)
Q Consensus 111 FP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~ 190 (639)
||+ ||++|+++||++|||||||+.|++ +.++|.+.. + +|+|..+....... . ....++
T Consensus 102 FP~-----Gl~~l~~~i~~~Gmk~GlW~ePe~----v~~~S~l~~--------~-hPdw~l~~~~~~~~-~---~r~~~v 159 (394)
T PF02065_consen 102 FPN-----GLKPLADYIHSLGMKFGLWFEPEM----VSPDSDLYR--------E-HPDWVLRDPGRPPT-L---GRNQYV 159 (394)
T ss_dssp STT-----HHHHHHHHHHHTT-EEEEEEETTE----EESSSCHCC--------S-SBGGBTCCTTSE-E-C---BTTBEE
T ss_pred hCC-----cHHHHHHHHHHCCCeEEEEecccc----ccchhHHHH--------h-CccceeecCCCCCc-C---cccceE
Confidence 998 999999999999999999999976 456665543 3 36776653322211 1 123578
Q ss_pred ecCCchHHHHHHHHH-HHHHHhhCCCEEEecCCCC--CC----CC--hHHHH----HHHHHHHhcCCCeEEEcCC--CCC
Q 006587 191 VNTKLGAGRAFLRSL-YQQYAEWGVDFVKHDCVFG--DD----LD--INEIS----FVSEVLKELDRPIVYSLSP--GTG 255 (639)
Q Consensus 191 lD~t~p~~q~y~~~~-~~~~a~WGvDylK~D~~~~--~~----~~--~~~~~----~m~~al~~~Gr~i~lsls~--g~~ 255 (639)
||+++|+|++|+... .+.+++|||||||+|++.. .. .+ ..+|. .|.+.|.+...+|+++.|. |..
T Consensus 160 LD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssGG~R 239 (394)
T PF02065_consen 160 LDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSGGGR 239 (394)
T ss_dssp B-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTTBTT
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCCCCc
Confidence 999999999998554 4678999999999999742 11 11 12232 3667777777889999885 233
Q ss_pred CChhhhhhhccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCCCC
Q 006587 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCN 335 (639)
Q Consensus 256 ~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~ 335 (639)
..+.+. .|.++--+| |..|.+.++..+......+... ..+ .|.-+.. +|...+
T Consensus 240 ~D~g~l----~~~~~~w~S-D~tda~~R~~iq~g~s~~~p~~-~~~------~hv~~~p---------------~~~~~r 292 (394)
T PF02065_consen 240 FDPGML----YYTPQSWTS-DNTDALERLRIQYGTSLFYPPE-YMG------AHVSASP---------------NHQTGR 292 (394)
T ss_dssp TSHHHH----CCSSEEESB-ST-SHHHHHHHHHHHCTTSSGG-GEE------EEEEHSS----------------TTTHH
T ss_pred cccchh----eeccccccC-CccchHHHhhhhcccccccCHH-HhC------CeEEecc---------------ccccCC
Confidence 444443 456666666 5566766666554433322221 111 1221110 111223
Q ss_pred CCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhccChhhhhhcc
Q 006587 336 LNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLITNPTVLEINT 382 (639)
Q Consensus 336 lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lLtN~eviainQ 382 (639)
.++-+.|+++++ + +.|.++.||++++++.++.++ +.||+-+
T Consensus 293 ~~~l~~r~~~a~---~-g~~g~e~dl~~ls~~e~~~~~--~~ia~YK 333 (394)
T PF02065_consen 293 TTPLEFRAHVAM---F-GRLGLELDLTKLSEEELAAVK--EQIAFYK 333 (394)
T ss_dssp HGGHHHHHHHHT---C-SEEEEESTGCGS-HHHHHHHH--HHHHHHH
T ss_pred cccceechhhhh---c-CCceeccCcccCCHHHHHHHH--HHHHHHH
Confidence 556666766544 4 899999999999999888775 4444444
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.6e-22 Score=215.25 Aligned_cols=169 Identities=21% Similarity=0.428 Sum_probs=133.4
Q ss_pred CCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCC
Q 006587 32 RASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRW 111 (639)
Q Consensus 32 ~a~tPPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rF 111 (639)
+.+..|||||||++|+.++|+++++++++. +|+.|.+.|+|||||+.... . ....-|+|..+.+||
T Consensus 288 ~~kprPi~~nsWea~Yfd~t~e~ile~vk~----akk~gvE~FvlDDGwfg~rn-d---------d~~slGDWlv~seKf 353 (687)
T COG3345 288 VKKPRPIGWNSWEAYYFDFTEEEILENVKE----AKKFGVELFVLDDGWFGGRN-D---------DLKSLGDWLVNSEKF 353 (687)
T ss_pred cCCCCcceeeceeeeeecCCHHHHHHHHHH----HhhcCeEEEEEccccccccC-c---------chhhhhceecchhhc
Confidence 445569999999999999999999999986 47889999999999996521 1 123459999999999
Q ss_pred CCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccc-----cccCC
Q 006587 112 PSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERAC-----AWMQH 186 (639)
Q Consensus 112 P~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c-----~~~~~ 186 (639)
|+ |+..|++.||++||+||||+.|++ +..+|.+ |+. +|+|..+..+.+...- .|...
T Consensus 354 Ps-----giE~li~~I~e~Gl~fGIWlePem----vs~dSdl--------frq-HPDWvvk~~G~p~~~~Rnqyvl~~s~ 415 (687)
T COG3345 354 PS-----GIEELIEAIAENGLIFGIWLEPEM----VSEDSDL--------FRQ-HPDWVVKVNGYPLMAGRNQYVLWLSN 415 (687)
T ss_pred cc-----cHHHHHHHHHHcCCccceeecchh----cccchHH--------Hhh-CCCeEEecCCccccccccchhhhccC
Confidence 99 999999999999999999999998 4455543 444 4789888544432211 13334
Q ss_pred CceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHH
Q 006587 187 GFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEI 232 (639)
Q Consensus 187 ~~~~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~~~~~~~~~ 232 (639)
..+++|.+++.+|.++..+++.++ +||+.++|+|+.+......++|
T Consensus 416 p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~qqry 462 (687)
T COG3345 416 PIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALPQQRY 462 (687)
T ss_pred hHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCccccchHH
Confidence 456788888999999989999998 9999999999987665555554
No 9
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.84 E-value=1.8e-18 Score=195.24 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=178.8
Q ss_pred CCCc-----eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCcc--ccCC-CcccccCCCCcc
Q 006587 34 SSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAY--VDSL-GFDVIDEWGRMI 105 (639)
Q Consensus 34 ~tPP-----mGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~--~~~~-~~~~~D~~G~l~ 105 (639)
++.| .|||||++|+.+|||+.|++.++.|+++-.+. ++++||||||....+... .... +.......-++.
T Consensus 196 K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p~--~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~ 273 (758)
T PLN02355 196 KKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVTP--KFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIK 273 (758)
T ss_pred ccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCCc--cEEEEeccccccccccccccccccccchhhhhhcccc
Confidence 3677 99999999999999999999999988765443 799999999985311000 0000 000001123455
Q ss_pred cCCCCCCCC--------CCCCChHHHHHHHHH-cCCEE-EEEeecCccccccCCCCccccccc-CCcccccCcccccccc
Q 006587 106 PDPDRWPSS--------RGGKGFTEVAKKVHA-MGLKF-GIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQWRAKDI 174 (639)
Q Consensus 106 pd~~rFP~~--------~~~~Gmk~lad~ih~-kGlK~-GIy~~pg~~~~a~~~~spi~gt~~-~~~y~~~g~~~~~~di 174 (639)
+|+ |||.- ....|||.+++.|++ .|+|. |+|.+-.-.+..+.|+.+....+. -..|-..-|+....+
T Consensus 274 ~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~- 351 (758)
T PLN02355 274 ENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNE- 351 (758)
T ss_pred ccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCcccccC-
Confidence 664 88831 012499999999986 68875 899876555555555554321110 001111111111000
Q ss_pred cccccccc-c---cCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC------CCCCChHH-HHHHHHHHHhc-
Q 006587 175 GLKERACA-W---MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF------GDDLDINE-ISFVSEVLKEL- 242 (639)
Q Consensus 175 ~~~~~~c~-~---~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~------~~~~~~~~-~~~m~~al~~~- 242 (639)
.|. + .+++...+|+ ..+..||+.+...+++-|||+||+|... ...-...+ .++.++||+++
T Consensus 352 -----~~~a~d~i~~~G~glv~P--e~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~ 424 (758)
T PLN02355 352 -----PCDALESITTNGLGLVNP--EKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASI 424 (758)
T ss_pred -----cchhhhhcccCceeccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 111 0 1223334443 3478899999999999999999999632 11111112 23344554432
Q ss_pred -----CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHH--HHHhh-hhhhhhhhhcccCCCCCcccCCC
Q 006587 243 -----DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVS-RDFSAANMIGAKGLQGKSWPDLD 314 (639)
Q Consensus 243 -----Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~--~~~~~-~~w~~~~~~~~~g~~~g~wnD~D 314 (639)
++-++-++|..+.. +. . .+...+.|+|+|.++.+..... ++..+ .... .+ ...|||-|
T Consensus 425 ~r~F~~ngvI~CMs~~~d~---i~-~-~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLl----lg-----~~v~PDWD 490 (758)
T PLN02355 425 ARNFPDNGIISCMSHNTDG---LY-S-AKRTAVIRASDDFWPRDPASHTIHIASVAYNTIF----LG-----EFMQPDWD 490 (758)
T ss_pred HHhCCCCceEEecccCchh---hc-c-cccceeeeeccccccCCCccCchhhhhhhhhhhh----hc-----cccccCcc
Confidence 56677777753321 11 1 2566899999999987764322 22221 1111 11 24689999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhcc
Q 006587 315 MLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLIT 373 (639)
Q Consensus 315 mL~vG~~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lLt 373 (639)
|+.-- ..-.+.|.+.-|++++|++++|-+-+-+-+.++=|.
T Consensus 491 MF~S~------------------hp~A~~HAaaRAisGGPIYvSD~PG~hdf~LLk~Lv 531 (758)
T PLN02355 491 MFHSL------------------HPMAEYHAAARAVGGCAIYVSDKPGQHDFNLLKKLV 531 (758)
T ss_pred cceec------------------CccHHHHHHHHhccCCcEEEecCCCCccHHHHHhhh
Confidence 99733 233578999999999999999998887766666553
No 10
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.83 E-value=4.9e-18 Score=191.30 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=178.9
Q ss_pred CCCCCc-----eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCcccc---CCCcccccCCCC
Q 006587 32 RASSPP-----RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVD---SLGFDVIDEWGR 103 (639)
Q Consensus 32 ~a~tPP-----mGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~---~~~~~~~D~~G~ 103 (639)
.-++.| .|||||++|+.+|||+.|++..+.|+++-.+. ++++||||||.-...+.... ..|.......-+
T Consensus 190 e~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip~--~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 190 EKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTPP--KFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred ccccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEccCccccccccccccccccccchhhhhhcc
Confidence 356678 99999999999999999999999987764443 79999999998542211000 000000001223
Q ss_pred cccCCC--------CCCCCCCCCChHHHHHHHHH-cCCEE-EEEeecCccccccCCCCccccccc-CCcccccCcccccc
Q 006587 104 MIPDPD--------RWPSSRGGKGFTEVAKKVHA-MGLKF-GIHVMRGISTQAFNADTPILDTLK-GGAYEDSGRQWRAK 172 (639)
Q Consensus 104 l~pd~~--------rFP~~~~~~Gmk~lad~ih~-kGlK~-GIy~~pg~~~~a~~~~spi~gt~~-~~~y~~~g~~~~~~ 172 (639)
+.+|++ .||. |||.+++.|++ .|+|. |+|.+-.-.+-.+.|+.+.+..+. -..|-..-|+-...
T Consensus 268 f~en~KF~~~~~~~~fp~-----Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~ 342 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVS-----GLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGN 342 (775)
T ss_pred ccccccccccccccCCCC-----cHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCcccc
Confidence 444431 4776 99999999986 68875 888876555555555543332110 00111000000000
Q ss_pred cccccccccc-ccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC------CCCCC-hHHHHHHHHHHHhc--
Q 006587 173 DIGLKERACA-WMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF------GDDLD-INEISFVSEVLKEL-- 242 (639)
Q Consensus 173 di~~~~~~c~-~~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~------~~~~~-~~~~~~m~~al~~~-- 242 (639)
+ ++.... -...+...+|+ ..+..||+.+.+.+++-|||+||+|... ...-. .+-.++.++||+++
T Consensus 343 ~---pd~a~d~l~~~G~glV~P--~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~ 417 (775)
T PLN02219 343 Q---PDIVMDSLSVHGLGLVNP--KKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIA 417 (775)
T ss_pred C---cchhhhhhhhCCccccCH--HHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHH
Confidence 0 000000 01123345665 4678999999999999999999999632 11111 11223455555442
Q ss_pred ----CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHH--HHHh-hhhhhhhhhhcccCCCCCcccCCCC
Q 006587 243 ----DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNV-SRDFSAANMIGAKGLQGKSWPDLDM 315 (639)
Q Consensus 243 ----Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~--~~~~-~~~w~~~~~~~~~g~~~g~wnD~Dm 315 (639)
++-++-++|..+. ... . .+...+.|+|+|.++.+..... ++.. +.... .+ .-.|||-||
T Consensus 418 r~F~~ng~I~CMsh~~d---~i~-~-~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLl----lg-----~~v~PDWDM 483 (775)
T PLN02219 418 RNFTDNGCISCMCHNTD---GLY-S-AKQTAVVRASDDFYPRDPASHTIHISSVAYNTLF----LG-----EFMQPDWDM 483 (775)
T ss_pred HhCCCCCeEEecccCch---hhh-c-ccccceeecccccccCCCccCcchhhhhhhhhHH----hc-----cccccCchh
Confidence 5667877775332 111 1 3566899999999987754322 1211 11111 11 136899999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhcc
Q 006587 316 LPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLIT 373 (639)
Q Consensus 316 L~vG~~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lLt 373 (639)
+.-- ..-.+.|.+.-|+.++|++++|-+-+-+-+.++=|.
T Consensus 484 FqS~------------------Hp~A~~HAaaRAiSGGPIYvSD~PG~Hdf~LLk~Lv 523 (775)
T PLN02219 484 FHSL------------------HPAAEYHGAARAVGGCAIYVSDKPGNHNFDLLRKLV 523 (775)
T ss_pred ceec------------------CccHHHHHHHHhhcCCcEEEecCCCCccHHHHHHhh
Confidence 9733 234488999999999999999998887766666553
No 11
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.81 E-value=1.2e-17 Score=188.10 Aligned_cols=295 Identities=14% Similarity=0.117 Sum_probs=176.9
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCcccc-C-CCcccccCCCCcccCCCCCCCCC
Q 006587 38 RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVD-S-LGFDVIDEWGRMIPDPDRWPSSR 115 (639)
Q Consensus 38 mGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~-~-~~~~~~D~~G~l~pd~~rFP~~~ 115 (639)
.|||||++|+.+|||+.|++..+.|+++-.+. ++++||||||.-..++.... . .+.-.....-++.++ .|||...
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p~--~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~ 280 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTPP--KFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKD 280 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCCc--eEEEEecccccccccccccccccccchhhhhhccCccc-ccccccc
Confidence 79999999999999999999999988765443 79999999998643211000 0 000000011234455 7887422
Q ss_pred C-CCChHHHHHHHH-HcCCEE-EEEeecCccccccCCCCcccccccC-CcccccCccccc--cccccccccccccCCCce
Q 006587 116 G-GKGFTEVAKKVH-AMGLKF-GIHVMRGISTQAFNADTPILDTLKG-GAYEDSGRQWRA--KDIGLKERACAWMQHGFM 189 (639)
Q Consensus 116 ~-~~Gmk~lad~ih-~kGlK~-GIy~~pg~~~~a~~~~spi~gt~~~-~~y~~~g~~~~~--~di~~~~~~c~~~~~~~~ 189 (639)
. ..|||.+++.|+ +.|+|. |+|.+-.-.+-.+.|+.+....+.. -.|...-++... .|+.... -..++..
T Consensus 281 ~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~----l~~~g~g 356 (750)
T PLN02684 281 DPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDV----MTLQGLG 356 (750)
T ss_pred CCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccc----cccCccc
Confidence 1 159999999997 678875 8888765556666666654322100 011110001100 0000000 0012233
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC------CCCCCh-HHHHHHHHHHHhc------CCCeEEEcCCCCCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF------GDDLDI-NEISFVSEVLKEL------DRPIVYSLSPGTGV 256 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~------~~~~~~-~~~~~m~~al~~~------Gr~i~lsls~g~~~ 256 (639)
.+|+ ..+..||+.+...+++-|||+||+|... ...-.. +-.++.++|++++ ++-++-++|..+..
T Consensus 357 lv~P--~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~~d~ 434 (750)
T PLN02684 357 LVNP--KKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHNTDA 434 (750)
T ss_pred ccCH--HHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchh
Confidence 4555 3578999999999999999999999642 111111 1123455555533 44577777753321
Q ss_pred ChhhhhhhccccceEEecCCCcCchHhHHH--HHHhhh-hhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCC
Q 006587 257 TPAMAKEVSGLVNMYRITGDDWDTWGDVAA--HFNVSR-DFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRT 333 (639)
Q Consensus 257 ~~~~a~~~~~~an~wRis~Di~d~W~~i~~--~~~~~~-~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~ 333 (639)
.. . .+...+.|.|+|.++.+..... ++..++ ... .+ .-.|||-||+.--
T Consensus 435 ---i~-~-sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLl----lg-----~~v~PDWDMFqS~-------------- 486 (750)
T PLN02684 435 ---LY-C-SKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVF----LG-----EFMQPDWDMFHSL-------------- 486 (750)
T ss_pred ---hh-c-ccccceeeeccccccCCCccchhhhhhhhhhhhh----hc-----cccccCcccceec--------------
Confidence 11 1 2466899999999987654322 222211 111 11 1368999999643
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhcc
Q 006587 334 CNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLIT 373 (639)
Q Consensus 334 ~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lLt 373 (639)
..-.+.|...-|+.++|++++|.+-+-+-+.++=|.
T Consensus 487 ----hp~A~~HAaaRAisGGPIYvSD~PG~Hdf~LLk~Lv 522 (750)
T PLN02684 487 ----HPAAEYHASARAISGGPLYVSDAPGKHNFELLKKLV 522 (750)
T ss_pred ----CccHHHHHHHHhhcCCceEEecCCCCccHHHHHhhh
Confidence 233588999999999999999988887766665553
No 12
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.75 E-value=8.9e-17 Score=169.85 Aligned_cols=206 Identities=16% Similarity=0.250 Sum_probs=140.4
Q ss_pred CCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCC
Q 006587 34 SSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPS 113 (639)
Q Consensus 34 ~tPPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~ 113 (639)
.++|. ||||+.+...+||++|++.++.+.+. ...+++|+||++|+.. +|.++.|++|||+
T Consensus 12 ~~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~--~iP~d~i~iD~~w~~~-----------------~g~f~~d~~~FPd 71 (303)
T cd06592 12 FRSPI-WSTWARYKADINQETVLNYAQEIIDN--GFPNGQIEIDDNWETC-----------------YGDFDFDPTKFPD 71 (303)
T ss_pred hCCCc-cCChhhhccCcCHHHHHHHHHHHHHc--CCCCCeEEeCCCcccc-----------------CCccccChhhCCC
Confidence 67888 99999999999999999999977542 2347899999999853 4889999999996
Q ss_pred CCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCcccccccccc-ccccccccCCCceee
Q 006587 114 SRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGL-KERACAWMQHGFMSV 191 (639)
Q Consensus 114 ~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~-~g~~~~~~di~~-~~~~c~~~~~~~~~l 191 (639)
++.++++||++|+|++||+.|++.. +++. |.+ ...++.+++... ....-.|.++..+.+
T Consensus 72 ------p~~mi~~l~~~G~k~~l~i~P~i~~-----~s~~--------~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~ 132 (303)
T cd06592 72 ------PKGMIDQLHDLGFRVTLWVHPFINT-----DSEN--------FREAVEKGYLVSEPSGDIPALTRWWNGTAAVL 132 (303)
T ss_pred ------HHHHHHHHHHCCCeEEEEECCeeCC-----CCHH--------HHhhhhCCeEEECCCCCCCcccceecCCcceE
Confidence 9999999999999999999998742 2221 221 012344444321 111111223334579
Q ss_pred cCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCC-----------CChHHH-HHHHHHHHhcCCCeEEEcCCCCCCCh
Q 006587 192 NTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDD-----------LDINEI-SFVSEVLKELDRPIVYSLSPGTGVTP 258 (639)
Q Consensus 192 D~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~~~-----------~~~~~~-~~m~~al~~~Gr~i~lsls~g~~~~~ 258 (639)
|+++|++++|+.+.++.+. ++|||++|+|+.-... ..+..| ..+.++..+.+ |++++=|.
T Consensus 133 Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg------ 205 (303)
T cd06592 133 DFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAG------ 205 (303)
T ss_pred eCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEee------
Confidence 9999999999988887765 9999999999864211 112334 35666666654 77766442
Q ss_pred hhhhhhccccceEEecCCCcCchHhH---HHHHH
Q 006587 259 AMAKEVSGLVNMYRITGDDWDTWGDV---AAHFN 289 (639)
Q Consensus 259 ~~a~~~~~~an~wRis~Di~d~W~~i---~~~~~ 289 (639)
++ ..+.++-.| ++|...+|+.+ +.++.
T Consensus 206 -~~-g~~~~~~~w--~GD~~s~W~~~~gl~~~i~ 235 (303)
T cd06592 206 -WR-SQGLPLFVR--MMDKDSSWGGDNGLKSLIP 235 (303)
T ss_pred -ee-cCCCCeeEE--cCCCCCCCCCCcCHHHHHH
Confidence 11 011222333 67988899876 55553
No 13
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.73 E-value=2.1e-15 Score=170.28 Aligned_cols=289 Identities=14% Similarity=0.178 Sum_probs=166.3
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHh-ccccCCceEEEecccccccccCCccc-cCCCccccc--------CCCCcccC
Q 006587 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYV-DSLGFDVID--------EWGRMIPD 107 (639)
Q Consensus 38 mGWnSW~~~~~~ite~~v~~~ad~~a~-gL~~~Gy~yi~IDdgW~~~~~~~~~~-~~~~~~~~D--------~~G~l~pd 107 (639)
.|||+|++|+.+|||+.|++-++-+.+ +... .+++||||||.-..+++.. ...+. .+. ..-++.+|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip~---~~vIIDDGWQsi~~d~~~~~~~~~~-~~~~~g~q~~~rL~~f~en 290 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCPP---GLVLIDDGWQSICHDEDPISDQEGM-NRTVAGEQMPCRLLKFEEN 290 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCCc---cEEEEcCCcccccccCccccccccc-ccccccchhhhhhcccccc
Confidence 799999999999999999999998765 4443 6999999999743211100 00000 000 01123444
Q ss_pred ---------CCCCCCCCCCCChHHHHHHHHHc--CCEE-EEEeecCccccccCCCCcccccccCCcccccCcc--ccccc
Q 006587 108 ---------PDRWPSSRGGKGFTEVAKKVHAM--GLKF-GIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQ--WRAKD 173 (639)
Q Consensus 108 ---------~~rFP~~~~~~Gmk~lad~ih~k--GlK~-GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~--~~~~d 173 (639)
+..||. |||.+++.|+++ |+|. |+|.+-.-.+-.+.++.+.+... -..|...-|+ -+..|
T Consensus 291 ~KF~~~~~~~~~~p~-----Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~-~~~~p~~spg~~~~~~d 364 (777)
T PLN02711 291 YKFRDYVSPKSLSNK-----GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPES-KVVAPKLSPGLKMTMED 364 (777)
T ss_pred ccccccccccCCCCC-----cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccc-eeeccccCccccccccc
Confidence 334565 999999999995 7865 89887655555555555332110 0001000000 01111
Q ss_pred cccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC-----CCCC-ChHH-H----HHHHHHHHh-
Q 006587 174 IGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-DINE-I----SFVSEVLKE- 241 (639)
Q Consensus 174 i~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~-----~~~~-~~~~-~----~~m~~al~~- 241 (639)
+..... ...+...+|+ ..+..||+.+...+++-|||+||+|-.. ...+ ...+ . +++..++.+
T Consensus 365 ~~~d~~----~~~g~glv~P--e~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~ 438 (777)
T PLN02711 365 LAVDKI----VNNGVGLVPP--ELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKH 438 (777)
T ss_pred cccccc----ccCcccccCH--HHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 111000 0123334555 3478999999999999999999999532 1111 1211 2 344444444
Q ss_pred -cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCc----------hHhHHHHHHhhhhhhhhhhhcccCCCCCcc
Q 006587 242 -LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDT----------WGDVAAHFNVSRDFSAANMIGAKGLQGKSW 310 (639)
Q Consensus 242 -~Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~----------W~~i~~~~~~~~~w~~~~~~~~~g~~~g~w 310 (639)
.++-++-++|..... +. .-.+...+-|+|+|.++. |-.-.+++..+++ +. +.+ .-.|
T Consensus 439 F~~ng~I~CMs~~~d~---~~-~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyN-SL--llg-----~~v~ 506 (777)
T PLN02711 439 FNGNGVIASMEHCNDF---MF-LGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYN-SL--WMG-----NFIH 506 (777)
T ss_pred CCCCCeEeecccCchh---hh-ccCcccceeeecccccCCCCccccccccccccceeeeehhh-hh--hhc-----cccc
Confidence 355677777743220 11 002345689999998843 3111111111111 00 111 2468
Q ss_pred cCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhc
Q 006587 311 PDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI 372 (639)
Q Consensus 311 nD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lL 372 (639)
||-||+.-- ..-.+.|.+.-|++++|++++|-+-+-+-+.++=|
T Consensus 507 PDWDMF~S~------------------Hp~A~~HAaaRAisGGPIYVSD~pG~Hdf~LLk~L 550 (777)
T PLN02711 507 PDWDMFQST------------------HPCAEFHAASRAISGGPIYVSDSVGKHNFPLLKRL 550 (777)
T ss_pred CCchhhhcc------------------CchHHHHHHHHhhcCCCEEEecCCCCccHHHHHhh
Confidence 999999633 34668899999999999999998877766555544
No 14
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.71 E-value=5.7e-16 Score=176.25 Aligned_cols=300 Identities=16% Similarity=0.223 Sum_probs=174.9
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHh-ccccCCceEEEecccccccccCCcccc-C------CC--cc----cccCCCC
Q 006587 38 RGWNSYDSFCWTISEEEFLQSAEIISQ-RLRPHGYEYVVVDYLWYRRKVKGAYVD-S------LG--FD----VIDEWGR 103 (639)
Q Consensus 38 mGWnSW~~~~~~ite~~v~~~ad~~a~-gL~~~Gy~yi~IDdgW~~~~~~~~~~~-~------~~--~~----~~D~~G~ 103 (639)
.|||||++|+.++|++.|++-++.+.+ ++.. .+++||||||.-...+.... . .+ +. .++++.+
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~~---~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIPP---RFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCCc---eEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 799999999999999999999997754 4443 59999999998654332100 0 00 00 1122222
Q ss_pred cccCC-----CCCCCCCCCCChHHHHHHHHHc--CCEE-EEEeecCccccccCCCCccc-ccccCCcccccCcc--cccc
Q 006587 104 MIPDP-----DRWPSSRGGKGFTEVAKKVHAM--GLKF-GIHVMRGISTQAFNADTPIL-DTLKGGAYEDSGRQ--WRAK 172 (639)
Q Consensus 104 l~pd~-----~rFP~~~~~~Gmk~lad~ih~k--GlK~-GIy~~pg~~~~a~~~~spi~-gt~~~~~y~~~g~~--~~~~ 172 (639)
+..+. ++||. |||.++++|+++ |+|. |+|.+--=.+..+.|+.+.. ..+ ..|...-|+ -...
T Consensus 274 F~~~~~~~~~~~~~~-----GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k--~~~~~~spg~~~~~~ 346 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPS-----GLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYK--LVYPKLSPGLQGNMP 346 (747)
T ss_pred hhhccCCCcccCCcc-----cHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccc--eeecccCCcccccCc
Confidence 22222 35777 999999999998 8965 88876433344444433221 000 000000000 0001
Q ss_pred ccccccccccccCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC-----CCC-ChHH-H----HHHHHHHHh
Q 006587 173 DIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG-----DDL-DINE-I----SFVSEVLKE 241 (639)
Q Consensus 173 di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~-----~~~-~~~~-~----~~m~~al~~ 241 (639)
|+.... -...+.+.+|+. .+..||+.+.+.+++-|||+||+|.... ..+ ...+ . ++|..++.+
T Consensus 347 d~~~d~----~~~~g~glv~p~--~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r 420 (747)
T PF05691_consen 347 DLAVDS----IVKGGLGLVDPE--DAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVAR 420 (747)
T ss_pred cccccc----cccCcccccCHH--HHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHH
Confidence 110000 001223334433 4788999999999999999999996421 111 1222 2 344444433
Q ss_pred -c-CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhH----------HHHHHhhh-hhhhhhhhcccCCCCC
Q 006587 242 -L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDV----------AAHFNVSR-DFSAANMIGAKGLQGK 308 (639)
Q Consensus 242 -~-Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i----------~~~~~~~~-~w~~~~~~~~~g~~~g 308 (639)
. |+.++-++|..+... + .-.+...+.|+|+|.++.+..- .+++..+. ... .+ ..
T Consensus 421 ~F~~~~vI~CMsh~~~~l--~--~~~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyNsL~----~g-----~~ 487 (747)
T PF05691_consen 421 HFSGNGVINCMSHNPDNL--Y--HSTKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYNSLL----LG-----QF 487 (747)
T ss_pred hCCCCCeEEecCCCccch--h--cccccccceeccccccCCCCCCCccccchhhHHHHHHHHHHHHH----HH-----hh
Confidence 2 567888887533211 1 1024457899999998765432 22222211 111 11 13
Q ss_pred cccCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhh--ccChhhhhhccCC
Q 006587 309 SWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSL--ITNPTVLEINTFS 384 (639)
Q Consensus 309 ~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~l--LtN~eviainQd~ 384 (639)
.|||-||+.-- ....+.|.++-||+++|++|+|.+-+.+-+.++= |.+..||.....+
T Consensus 488 ~~PDwDMF~S~------------------h~~A~~HAaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg 547 (747)
T PF05691_consen 488 VWPDWDMFQSS------------------HPAAEFHAAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPG 547 (747)
T ss_pred cCCCccccccc------------------CccHHHHHHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCC
Confidence 68999999732 1346789999999999999999998877665543 3555666666655
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.58 E-value=5.5e-14 Score=148.90 Aligned_cols=197 Identities=19% Similarity=0.245 Sum_probs=134.7
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHH
Q 006587 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (639)
Q Consensus 49 ~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih 128 (639)
..+++++++.++.+.+. ..-++.|.||++|+... ..|.+..|++|||+ ++.+++.||
T Consensus 20 y~~~~~v~~~~~~~~~~--~iP~d~~~lD~~w~~~~---------------~~~~f~~d~~~FPd------~~~~i~~l~ 76 (308)
T cd06593 20 YYDEEEVNEFADGMRER--NLPCDVIHLDCFWMKEF---------------QWCDFEFDPDRFPD------PEGMLSRLK 76 (308)
T ss_pred CCCHHHHHHHHHHHHHc--CCCeeEEEEecccccCC---------------cceeeEECcccCCC------HHHHHHHHH
Confidence 38999999998876442 22268999999999531 23689999999996 999999999
Q ss_pred HcCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCCCceeecCCchHHHHHHHHHHH
Q 006587 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (639)
Q Consensus 129 ~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~ 207 (639)
++|+|++||+.|++.. ++++ |.+. ..++.+++.........+.++....+|+++|++++|+.+.++
T Consensus 77 ~~G~~~~~~~~P~i~~-----~~~~--------~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 143 (308)
T cd06593 77 EKGFKVCLWINPYIAQ-----KSPL--------FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLK 143 (308)
T ss_pred HCCCeEEEEecCCCCC-----Cchh--------HHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHH
Confidence 9999999999998732 2322 2221 123455544322222233344446799999999999999999
Q ss_pred HHHhhCCCEEEecCCCCCCC--------Ch----H-----HHHHHHHHHHhc---CCCeEEEcCCCCCCChhhhhhhccc
Q 006587 208 QYAEWGVDFVKHDCVFGDDL--------DI----N-----EISFVSEVLKEL---DRPIVYSLSPGTGVTPAMAKEVSGL 267 (639)
Q Consensus 208 ~~a~WGvDylK~D~~~~~~~--------~~----~-----~~~~m~~al~~~---Gr~i~lsls~g~~~~~~~a~~~~~~ 267 (639)
.+.++|||++|+|+...-+. .. . ..+++.+++++. .||++++=+... ....|
T Consensus 144 ~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~--------Gsqry 215 (308)
T cd06593 144 PLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWA--------GSQKY 215 (308)
T ss_pred HHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcc--------ccccC
Confidence 99999999999998642110 11 1 124566666543 358888755311 11345
Q ss_pred cceEEecCCCcCchHhHHHHHHhh
Q 006587 268 VNMYRITGDDWDTWGDVAAHFNVS 291 (639)
Q Consensus 268 an~wRis~Di~d~W~~i~~~~~~~ 291 (639)
+-.| ++|...+|+.++.++...
T Consensus 216 ~~~w--~GD~~s~w~~L~~~i~~~ 237 (308)
T cd06593 216 PVHW--GGDCESTFEGMAESLRGG 237 (308)
T ss_pred CCEE--CCCcccCHHHHHHHHHHH
Confidence 5566 889999999888776543
No 16
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.46 E-value=2.4e-12 Score=145.61 Aligned_cols=306 Identities=16% Similarity=0.224 Sum_probs=167.1
Q ss_pred eEecCcccccccCCHHHHHHHHHHHHhc-cccCCceEEEecccccccccCCcc------cc----------CCCccc---
Q 006587 38 RGWNSYDSFCWTISEEEFLQSAEIISQR-LRPHGYEYVVVDYLWYRRKVKGAY------VD----------SLGFDV--- 97 (639)
Q Consensus 38 mGWnSW~~~~~~ite~~v~~~ad~~a~g-L~~~Gy~yi~IDdgW~~~~~~~~~------~~----------~~~~~~--- 97 (639)
.|||+|++||.+|+.+.|.+-.+-++++ ..+ .+++||||||.-..+... +. -.++..
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~pp---rfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVPP---RFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCCc---cEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 6999999999999999999999877664 444 699999999975321100 00 000000
Q ss_pred -cc-CCC-CcccCCCCCCCC------------------------------------------------------------
Q 006587 98 -ID-EWG-RMIPDPDRWPSS------------------------------------------------------------ 114 (639)
Q Consensus 98 -~D-~~G-~l~pd~~rFP~~------------------------------------------------------------ 114 (639)
++ +.| .+.|++.+|+--
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 00 001 122344444321
Q ss_pred ------CCCCChHHHHHHHHHc--CCE-EEEEeecCccccccCCCCcccccccCCcccccCcc--ccccccccccccccc
Q 006587 115 ------RGGKGFTEVAKKVHAM--GLK-FGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQ--WRAKDIGLKERACAW 183 (639)
Q Consensus 115 ------~~~~Gmk~lad~ih~k--GlK-~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~--~~~~di~~~~~~c~~ 183 (639)
....|||.+++.|+++ |+| .++|.+-.-.+..+.|+.+-+.+. -.|...-|+ -+..|++.-. -
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k--~~~p~~spg~~~~~~d~a~d~----i 454 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAK--VVPARLSPGLDGTMNDLAVDK----I 454 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcce--EEecccCccccccCcchhhhh----e
Confidence 0124999999999885 465 477776544444445544211110 000000000 0111111000 0
Q ss_pred cCCCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC-----CCCC-C-hHHHHHHHHHH----Hh--cCCCeEEEc
Q 006587 184 MQHGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF-----GDDL-D-INEISFVSEVL----KE--LDRPIVYSL 250 (639)
Q Consensus 184 ~~~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~-----~~~~-~-~~~~~~m~~al----~~--~Gr~i~lsl 250 (639)
..++...+|+. .+..||+.+...+++-|||+||+|... ...+ . .+-.+++++|+ .+ .++-++-++
T Consensus 455 ~~~G~glv~P~--~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM 532 (865)
T PLN02982 455 VEGGIGLVHPS--QAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASM 532 (865)
T ss_pred ecCceeccCHH--HHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Confidence 11344556653 368899999999999999999999532 1111 1 11123444444 33 244577777
Q ss_pred CCCCCCChhhhhhhccccceEEecCCCcCc------hHhH----HHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcc
Q 006587 251 SPGTGVTPAMAKEVSGLVNMYRITGDDWDT------WGDV----AAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGW 320 (639)
Q Consensus 251 s~g~~~~~~~a~~~~~~an~wRis~Di~d~------W~~i----~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~ 320 (639)
|..+.. +. .-.+..-+-|+|+|.++. |... .+++..+++ +. +.+ .-.|||-||+.-
T Consensus 533 ~~~~~~---~~-~~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyN-SL--l~G-----~~v~PDWDMFqS-- 598 (865)
T PLN02982 533 QQCNDF---FF-LGTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYN-SM--WMG-----QIIQPDWDMFQS-- 598 (865)
T ss_pred ccCchh---hh-ccCCcceeeeccccccCCCCCcCccccccccceeeeehhhh-hH--hhc-----cccccCchhccc--
Confidence 643221 11 002344678999998753 3211 111221111 10 111 246899999864
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCHHHHhhc--cChhhhhhccCC
Q 006587 321 LTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDETTYSLI--TNPTVLEINTFS 384 (639)
Q Consensus 321 ~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~~~l~lL--tN~eviainQd~ 384 (639)
+..-.+.|...-||+++|++++|-+-+-+-+.+.=| ..-.|+.....+
T Consensus 599 ----------------~H~~A~fHAaaRAIsGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~pg 648 (865)
T PLN02982 599 ----------------DHLCAEFHAGSRAICGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHYA 648 (865)
T ss_pred ----------------cCchHHHHHHHHhhcCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCCC
Confidence 234568899999999999999998887765554433 334444444443
No 17
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.24 E-value=5e-10 Score=129.71 Aligned_cols=214 Identities=21% Similarity=0.309 Sum_probs=139.6
Q ss_pred CCCCCCce---E-ecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCccc
Q 006587 31 VRASSPPR---G-WNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (639)
Q Consensus 31 ~~a~tPPm---G-WnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~p 106 (639)
|.++.||. | |-|. .|..+.+|++|++.++.+.+. ..-.+.|.+|+.|+... .++.++.
T Consensus 258 Grp~lpP~WalG~w~s~-~~~~~~~e~~v~~~~~~~r~~--~iP~d~i~lD~~w~~~~---------------~~~~f~w 319 (665)
T PRK10658 258 GRPALPPAWSFGLWLTT-SFTTNYDEATVNSFIDGMAER--DLPLHVFHFDCFWMKEF---------------QWCDFEW 319 (665)
T ss_pred CCCCCCchhhhheeeec-ccccCCCHHHHHHHHHHHHHc--CCCceEEEEchhhhcCC---------------ceeeeEE
Confidence 44555663 3 4443 244456899999999977652 23358999999998541 2578999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccc-cccC
Q 006587 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERAC-AWMQ 185 (639)
Q Consensus 107 d~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c-~~~~ 185 (639)
|+++||+ .+.++++||++|+|+-+|+.|++. .++++.... ...++.+++.......- .| +
T Consensus 320 d~~~FPd------p~~mi~~L~~~G~k~~~~i~P~i~-----~~s~~f~e~-------~~~gy~vk~~~G~~~~~~~W-~ 380 (665)
T PRK10658 320 DPRTFPD------PEGMLKRLKAKGLKICVWINPYIA-----QKSPLFKEG-------KEKGYLLKRPDGSVWQWDKW-Q 380 (665)
T ss_pred ChhhCCC------HHHHHHHHHHCCCEEEEeccCCcC-----CCchHHHHH-------HHCCeEEECCCCCEeeeeec-C
Confidence 9999996 899999999999999999999874 233322210 01124444332222111 13 3
Q ss_pred CCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC--------CCCChHH----H-----HHHHHHHHh-c--CCC
Q 006587 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG--------DDLDINE----I-----SFVSEVLKE-L--DRP 245 (639)
Q Consensus 186 ~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~--------~~~~~~~----~-----~~m~~al~~-~--Gr~ 245 (639)
+.-..+|.++|++++|+.+.++.+.+.|||.+|.|+.-. +..++.+ | ++..+++++ . .||
T Consensus 381 g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~ 460 (665)
T PRK10658 381 PGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEA 460 (665)
T ss_pred CCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCce
Confidence 334579999999999999888889999999999997421 1112211 1 345566655 3 468
Q ss_pred eEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHHhh
Q 006587 246 IVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (639)
Q Consensus 246 i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (639)
++++=|.... .++|+-.| ++|+..+|+.+..++...
T Consensus 461 ~i~tRs~~aG--------sQry~~~W--sGD~~stw~~l~~si~~~ 496 (665)
T PRK10658 461 VLFARSATVG--------GQQFPVHW--GGDCYSNYESMAESLRGG 496 (665)
T ss_pred EEEEecccCC--------CCCCCCEE--CCCCCCCHHHHHHHHHHH
Confidence 8887653110 12444344 589999999988776543
No 18
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.22 E-value=2.6e-10 Score=126.73 Aligned_cols=217 Identities=17% Similarity=0.215 Sum_probs=128.4
Q ss_pred CCCCCCceEe--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC
Q 006587 31 VRASSPPRGW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP 108 (639)
Q Consensus 31 ~~a~tPPmGW--nSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~ 108 (639)
|-++.||. | --|.+-...-+++++++.++.+.+. ....+.++||+.|+.. ++.+..|+
T Consensus 20 G~~~~pP~-walG~~~~~~~~~~~~~v~~~i~~~~~~--~iP~d~~~iD~~~~~~-----------------~~~f~~d~ 79 (441)
T PF01055_consen 20 GRPPLPPR-WALGFWQSRWGYYNQDEVREVIDRYRSN--GIPLDVIWIDDDYQDG-----------------YGDFTWDP 79 (441)
T ss_dssp SSS----G-GGGSEEEEESTBTSHHHHHHHHHHHHHT--T--EEEEEE-GGGSBT-----------------TBTT-B-T
T ss_pred CCCCCCch-hhhceEeecCcCCCHHHHHHHHHHHHHc--CCCccceecccccccc-----------------cccccccc
Confidence 45566775 3 1222222235689999999876552 3457899999999863 46889999
Q ss_pred CCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCCC
Q 006587 109 DRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHG 187 (639)
Q Consensus 109 ~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~~ 187 (639)
++||+ ++.+++.||++|+|+++|+.|++..... ..+ .|.+. ..++.+++.........+.++.
T Consensus 80 ~~FPd------~~~~~~~l~~~G~~~~~~~~P~v~~~~~--~~~--------~~~~~~~~~~~v~~~~g~~~~~~~w~g~ 143 (441)
T PF01055_consen 80 ERFPD------PKQMIDELHDQGIKVVLWVHPFVSNDSP--DYE--------NYDEAKEKGYLVKNPDGSPYIGRVWPGK 143 (441)
T ss_dssp TTTTT------HHHHHHHHHHTT-EEEEEEESEEETTTT--B-H--------HHHHHHHTT-BEBCTTSSB-EEEETTEE
T ss_pred ccccc------hHHHHHhHhhCCcEEEEEeecccCCCCC--cch--------hhhhHhhcCceeecccCCcccccccCCc
Confidence 99995 9999999999999999999998854321 000 11110 1123333222211112222333
Q ss_pred ceeecCCchHHHHHHHHHHHHHHhh-CCCEEEecCCCCCC----------------CChHH----H-----HHHHHHHHh
Q 006587 188 FMSVNTKLGAGRAFLRSLYQQYAEW-GVDFVKHDCVFGDD----------------LDINE----I-----SFVSEVLKE 241 (639)
Q Consensus 188 ~~~lD~t~p~~q~y~~~~~~~~a~W-GvDylK~D~~~~~~----------------~~~~~----~-----~~m~~al~~ 241 (639)
...+|.++|++++|+....+.+.+. |||++|+|+.-... ....+ | ++..+++++
T Consensus 144 ~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~ 223 (441)
T PF01055_consen 144 GGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALRE 223 (441)
T ss_dssp EEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHH
T ss_pred ccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccchhhhhhhhhh
Confidence 4679999999999998888888777 99999999842211 01111 2 345566554
Q ss_pred ---cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHHhhhh
Q 006587 242 ---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSRD 293 (639)
Q Consensus 242 ---~Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~~ 293 (639)
..||++++-+... ...+|+..| ++|+..+|+.+..++.....
T Consensus 224 ~~~~~r~~~~sRs~~~--------G~qr~~~~w--~GD~~s~w~~L~~~i~~~l~ 268 (441)
T PF01055_consen 224 IDPNKRPFIFSRSGWA--------GSQRYGGHW--SGDNSSSWDGLRSSIPAMLN 268 (441)
T ss_dssp HSTTSC-EEEESSEET--------TGGGTCEEE--ECSSBSSHHHHHHHHHHHHH
T ss_pred ccCCCCcceeecccCC--------CCCccceee--cccccccHHHHHHHHHHHHH
Confidence 4678888866311 113455564 77999999999887765443
No 19
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.21 E-value=7.3e-10 Score=119.13 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=126.6
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-|+++|++.++.+.+. ..-++.|.||..|+.. ++.+..|++|||+ .+.+.+.+|+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~fPd------p~~m~~~l~~ 75 (339)
T cd06604 21 YPEEEVREIADEFRER--DIPCDAIYLDIDYMDG-----------------YRVFTWDKERFPD------PKELIKELHE 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECchhhCC-----------------CCceeeccccCCC------HHHHHHHHHH
Confidence 4889999999876442 2336899999999843 4678889999996 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~ 208 (639)
+|+|+-+|+.|.+... ++.+. |.+. ..++.+++.......-.+.++.-..+|.++|++++|+.+..+.
T Consensus 76 ~g~~~~~~~~P~v~~~---~~~~~--------~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 144 (339)
T cd06604 76 QGFKVVTIIDPGVKVD---PGYDV--------YEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKK 144 (339)
T ss_pred CCCEEEEEEeCceeCC---CCChH--------HHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHH
Confidence 9999999999988532 22221 2110 1123333322111111122332345899999999999888888
Q ss_pred HHhhCCCEEEecCCCCC----------C---C--------ChHH----H-----HHHHHHHHhc---CCCeEEEcCCCCC
Q 006587 209 YAEWGVDFVKHDCVFGD----------D---L--------DINE----I-----SFVSEVLKEL---DRPIVYSLSPGTG 255 (639)
Q Consensus 209 ~a~WGvDylK~D~~~~~----------~---~--------~~~~----~-----~~m~~al~~~---Gr~i~lsls~g~~ 255 (639)
+.+.|||++|+|+.-.. + + ...+ | ++..+++++. .||++++=+....
T Consensus 145 ~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G 224 (339)
T cd06604 145 FVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAG 224 (339)
T ss_pred HhhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence 88999999999975311 0 0 1111 1 2345555544 4788887653111
Q ss_pred CChhhhhhhccccceEEecCCCcCchHhHHHHHHhh
Q 006587 256 VTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (639)
Q Consensus 256 ~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (639)
.+.|+-. -++|...+|+.++.++...
T Consensus 225 --------~qry~~~--W~GD~~ssW~~L~~~i~~~ 250 (339)
T cd06604 225 --------IQRYAAV--WTGDNRSSWEHLRLSIPML 250 (339)
T ss_pred --------ccccccc--cCCcccCCHHHHHHHHHHH
Confidence 1234433 3679999999888776543
No 20
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.12 E-value=3.3e-09 Score=113.05 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=127.1
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHH
Q 006587 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (639)
Q Consensus 49 ~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih 128 (639)
..++++|++.++.+.+. ..-++.|.||++|+... + ..+..+.-|+++||+ .+.|+++||
T Consensus 25 ~~~q~~v~~~~~~~r~~--~iP~d~i~ld~~~~~~~--~-----------~~~~~f~~d~~~FPd------p~~mi~~L~ 83 (317)
T cd06599 25 PDAQEALLEFIDKCREH--DIPCDSFHLSSGYTSIE--G-----------GKRYVFNWNKDRFPD------PAAFVAKFH 83 (317)
T ss_pred ccHHHHHHHHHHHHHHc--CCCeeEEEEeccccccC--C-----------CceeeeecCcccCCC------HHHHHHHHH
Confidence 35699999999876542 23368999999998641 0 123457888999996 999999999
Q ss_pred HcCCEEEEEeecCccccccCCCCcccccccCCccccc-Cccccccccccc-cccccccCCCceeecCCchHHHHHHHHHH
Q 006587 129 AMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLK-ERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (639)
Q Consensus 129 ~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~-~~~c~~~~~~~~~lD~t~p~~q~y~~~~~ 206 (639)
++|+|+-+|+.|++.. .++. |.+. ..++.+++.... ...-.+.++.-..+|.++|++++|+.+.+
T Consensus 84 ~~g~k~~~~i~P~i~~-----~~~~--------y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 150 (317)
T cd06599 84 ERGIRLAPNIKPGLLQ-----DHPR--------YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGV 150 (317)
T ss_pred HCCCEEEEEeCCcccC-----CCHH--------HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHH
Confidence 9999999999998742 1221 2211 112333332111 01111222222469999999999997777
Q ss_pred -HHHHhhCCCEEEecCCCCC-----C--------CChHH----H-----HHHHHHHHhc---CCCeEEEcCCCCCCChhh
Q 006587 207 -QQYAEWGVDFVKHDCVFGD-----D--------LDINE----I-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAM 260 (639)
Q Consensus 207 -~~~a~WGvDylK~D~~~~~-----~--------~~~~~----~-----~~m~~al~~~---Gr~i~lsls~g~~~~~~~ 260 (639)
+.+.+.|||++|+|++-.. . .+..+ | ++..+++++. .||++++=+...
T Consensus 151 ~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~------ 224 (317)
T cd06599 151 KEALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFA------ 224 (317)
T ss_pred HHHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcc------
Confidence 6788999999999976311 0 11111 1 3455555543 468888755311
Q ss_pred hhhhccccceEEecCCCcCchHhHHHHHHhhh
Q 006587 261 AKEVSGLVNMYRITGDDWDTWGDVAAHFNVSR 292 (639)
Q Consensus 261 a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~ 292 (639)
...+|+-+| ++|+..+|+.+..++....
T Consensus 225 --G~qry~~~W--sGD~~s~W~~L~~~i~~~L 252 (317)
T cd06599 225 --GIQRYAQTW--SGDNRTSWKTLRYNIAMGL 252 (317)
T ss_pred --cccCCcCee--CCCcccCHHHHHHHHHHHH
Confidence 113443443 6899999999887765443
No 21
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.10 E-value=5.5e-09 Score=111.37 Aligned_cols=197 Identities=15% Similarity=0.199 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-|++++++.++-+.+. ..-.+.|.||..|+.. ++.+..|+++||+ .+.++++||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~~i~~l~~ 75 (317)
T cd06600 21 YPQDKVVEVVDIMQKE--GFPYDVVFLDIHYMDS-----------------YRLFTWDPYRFPE------PKKLIDELHK 75 (317)
T ss_pred CCHHHHHHHHHHHHHc--CCCcceEEEChhhhCC-----------------CCceeechhcCCC------HHHHHHHHHH
Confidence 4799999999876542 3346899999999743 3678889999996 8999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~ 208 (639)
+|+|+-+|+.|++... +..+. |.+. ..++.+++.........+.++.-..+|.++|++++|+.+.++.
T Consensus 76 ~g~k~~~~~~P~i~~~---~~~~~--------~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~ 144 (317)
T cd06600 76 RNVKLVTIVDPGIRVD---QNYSP--------FLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSE 144 (317)
T ss_pred CCCEEEEEeeccccCC---CCChH--------HHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHH
Confidence 9999999999998521 11111 1110 0123333222211112222333346899999999999888877
Q ss_pred HH-hhCCCEEEecCCCCCCC---C----hHHHHHHHHHHHh---cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCC
Q 006587 209 YA-EWGVDFVKHDCVFGDDL---D----INEISFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (639)
Q Consensus 209 ~a-~WGvDylK~D~~~~~~~---~----~~~~~~m~~al~~---~Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di 277 (639)
+. +.|||++|+|+.-...+ + .....+..+++++ ..||++++=+.... ...|+-. -++|+
T Consensus 145 ~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~~~--W~GD~ 214 (317)
T cd06600 145 WLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAG--------SQKYAAI--WTGDN 214 (317)
T ss_pred HhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccc--------cCCccce--ECCcc
Confidence 65 99999999997532111 1 1111234444443 35789888663211 1234422 36799
Q ss_pred cCchHhHHHHHHhhh
Q 006587 278 WDTWGDVAAHFNVSR 292 (639)
Q Consensus 278 ~d~W~~i~~~~~~~~ 292 (639)
..+|+.+...+...-
T Consensus 215 ~s~W~~L~~~i~~~l 229 (317)
T cd06600 215 TASWDDLKLSIPLVL 229 (317)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999887765443
No 22
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.09 E-value=1.9e-08 Score=108.18 Aligned_cols=232 Identities=13% Similarity=0.142 Sum_probs=132.5
Q ss_pred CCCCceEec--CcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccc-cCCCccccc-----CCCCc
Q 006587 33 ASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYV-DSLGFDVID-----EWGRM 104 (639)
Q Consensus 33 a~tPPmGWn--SW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~-~~~~~~~~D-----~~G~l 104 (639)
++.||. |. -|.+-...-++++|++.++-+.+. ..-++.|.||+ |+..... +. .+..+-..| .++..
T Consensus 3 p~lpP~-walG~~~sr~~Y~~~~ev~~v~~~~~~~--~iP~d~i~lD~-W~~~~~~--~~w~d~~y~~~~~~~~~~~~~~ 76 (340)
T cd06597 3 PELLPK-WAFGLWMSANEWDTQAEVMRQMDAHEEH--GIPVTVVVIEQ-WSDEATF--YVFNDAQYTPKDGGAPLSYDDF 76 (340)
T ss_pred CCCCch-HHhhhhhhccCCCCHHHHHHHHHHHHHc--CCCeeEEEEec-ccCccee--eeeccchhcccccCCcceeccc
Confidence 455663 33 333333347899999999876542 23368999995 8863110 00 000000001 12344
Q ss_pred ccC-CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCccccccccccccccc-
Q 006587 105 IPD-PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERAC- 181 (639)
Q Consensus 105 ~pd-~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~-~g~~~~~~di~~~~~~c- 181 (639)
.-+ .+|||+ .+.|+++||++|+|+-+|+.|++.... .+ .+.. ...|.+ ...++.+++.......-
T Consensus 77 ~f~~~~~FPd------p~~mi~~Lh~~G~kv~l~v~P~i~~~~-~~----~~~~-~~~~~~~~~~g~~vk~~~G~~~~~~ 144 (340)
T cd06597 77 SFPVEGRWPN------PKGMIDELHEQGVKVLLWQIPIIKLRP-HP----HGQA-DNDEDYAVAQNYLVQRGVGKPYRIP 144 (340)
T ss_pred ccCccccCCC------HHHHHHHHHHCCCEEEEEecCcccccc-cc----cccc-chhHHHHHHCCEEEEcCCCCccccc
Confidence 444 368996 999999999999999999999885321 00 0000 001111 01124444432221111
Q ss_pred cccCCCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCC---C------CCChH--------HH-HHHHHHHHhc
Q 006587 182 AWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFG---D------DLDIN--------EI-SFVSEVLKEL 242 (639)
Q Consensus 182 ~~~~~~~~~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~---~------~~~~~--------~~-~~m~~al~~~ 242 (639)
.+.++.-..+|.|+|++++|..+.++.+. +.|||.+|+|+--. . ..... .+ +++.+++++.
T Consensus 145 ~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~ 224 (340)
T cd06597 145 GQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRA 224 (340)
T ss_pred cccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhc
Confidence 22233335799999999999988888765 79999999996321 1 00111 11 3466666665
Q ss_pred C-CCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHHhhh
Q 006587 243 D-RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSR 292 (639)
Q Consensus 243 G-r~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~ 292 (639)
+ ||++++=|.... .++|+=.| ++|+..+|+.++.++...-
T Consensus 225 ~~r~filtRs~~~G--------sqry~~~W--sGD~~s~W~~L~~~i~~~L 265 (340)
T cd06597 225 KKDGVTFSRAGYTG--------AQAHGIFW--AGDENSTFGAFRWSVFAGL 265 (340)
T ss_pred cCCcEEEEecccCc--------cCCCccee--cCCCCCCHHHHHHHHHHHH
Confidence 5 788887653111 13454455 7899999999887765433
No 23
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.09 E-value=4.6e-09 Score=111.95 Aligned_cols=202 Identities=12% Similarity=0.105 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-+++++++.++-+.+. ..-.+.|.||.+|+..... ...+|.+..|++|||+ .+.++++||+
T Consensus 21 ~~~~~v~~~~~~~~~~--~iP~d~i~lD~~w~~~~~~-----------~~~~~~f~wd~~~FPd------p~~mi~~L~~ 81 (317)
T cd06598 21 RNWQEVDDTIKTLREK--DFPLDAAILDLYWFGKDID-----------KGHMGNLDWDRKAFPD------PAGMIADLAK 81 (317)
T ss_pred CCHHHHHHHHHHHHHh--CCCceEEEEechhhcCccc-----------CCceeeeEeccccCCC------HHHHHHHHHH
Confidence 4789999999876542 2336899999999864210 1245789999999996 8999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-Ccccccccccc-ccccccccCCCceeecCCchHHHHHHHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGL-KERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~-~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~ 207 (639)
+|+|+-+|+.|++.. +++. |.+- ..++.+.+... ....-.+.++.-..+|.|+|++++|+.+.++
T Consensus 82 ~G~k~~~~v~P~v~~-----~~~~--------y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 148 (317)
T cd06598 82 KGVKTIVITEPFVLK-----NSKN--------WGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYK 148 (317)
T ss_pred cCCcEEEEEcCcccC-----Cchh--------HHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHH
Confidence 999999999998743 2222 2110 01121111111 0111112222234689999999999988888
Q ss_pred HHHhhCCCEEEecCCCCCCC---------ChHH----H-----HHHHHHHHh---cCCCeEEEcCCCCCCChhhhhhhcc
Q 006587 208 QYAEWGVDFVKHDCVFGDDL---------DINE----I-----SFVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSG 266 (639)
Q Consensus 208 ~~a~WGvDylK~D~~~~~~~---------~~~~----~-----~~m~~al~~---~Gr~i~lsls~g~~~~~~~a~~~~~ 266 (639)
.+.+.|||++|.|++-.... ...+ | +++.+++++ ..||++++=+.... .++
T Consensus 149 ~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G--------sqr 220 (317)
T cd06598 149 KLIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG--------SQR 220 (317)
T ss_pred HhhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc--------ccc
Confidence 88999999999998742100 1111 2 334455544 34788887553110 124
Q ss_pred ccceEEecCCCcCchHhHHHHHHhhh
Q 006587 267 LVNMYRITGDDWDTWGDVAAHFNVSR 292 (639)
Q Consensus 267 ~an~wRis~Di~d~W~~i~~~~~~~~ 292 (639)
|+.+-. ++|+..+|+.++.++...-
T Consensus 221 y~~~~W-sGD~~s~W~~L~~~i~~~l 245 (317)
T cd06598 221 YGVIPW-SGDVGRTWDGLKSQPNAAL 245 (317)
T ss_pred CcCCcc-CCCCcCCHHHHHHHHHHHH
Confidence 432211 5799999999888766443
No 24
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=99.09 E-value=1.3e-08 Score=108.61 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCC-----CcccCCCCCCCCCCCCChHHHHH
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWG-----RMIPDPDRWPSSRGGKGFTEVAK 125 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G-----~l~pd~~rFP~~~~~~Gmk~lad 125 (639)
++++|++.++-+.+. ..-.+.|.|| .|+.... +.+| .+..|++|||+ .+.|++
T Consensus 21 s~~~v~~~~~~~~~~--~iP~d~i~ld-dw~~~~~-------------~~~g~~~~~~f~~d~~~FPd------p~~mi~ 78 (317)
T cd06594 21 GTDKVLEALEKARAA--GVKVAGLWLQ-DWTGRRE-------------TSFGDRLWWNWEWDPERYPG------LDELIE 78 (317)
T ss_pred CHHHHHHHHHHHHHc--CCCeeEEEEc-cccCccc-------------ccccceeeeeeEEChhhCCC------HHHHHH
Confidence 999999999977542 2236889999 5864210 1123 47899999996 999999
Q ss_pred HHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCccccccccccccccccccCCCceeecCCchHHHHHHHH
Q 006587 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS 204 (639)
Q Consensus 126 ~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~-~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~ 204 (639)
+||++|+|+-+++.|++..- ++- .|.+ ...++.+++.......-.+.+..-..+|.++|++++|+.+
T Consensus 79 ~Lh~~G~~~~~~i~P~v~~~-----~~~-------~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 146 (317)
T cd06594 79 ELKARGIRVLTYINPYLADD-----GPL-------YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQ 146 (317)
T ss_pred HHHHCCCEEEEEecCceecC-----Cch-------hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHH
Confidence 99999999999999987421 110 0121 0122344433222111122222224699999999999976
Q ss_pred HHHHH-HhhCCCEEEecCCCCC--------CCChHH----H-----HHHHHHHHhc---CCCeEEEcCCCCCCChhhhhh
Q 006587 205 LYQQY-AEWGVDFVKHDCVFGD--------DLDINE----I-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMAKE 263 (639)
Q Consensus 205 ~~~~~-a~WGvDylK~D~~~~~--------~~~~~~----~-----~~m~~al~~~---Gr~i~lsls~g~~~~~~~a~~ 263 (639)
.++.+ .+.|||.+|.|+--.. ..+..+ | ++..+++++. +||++++=|... .
T Consensus 147 ~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~--------G 218 (317)
T cd06594 147 VIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFT--------G 218 (317)
T ss_pred HHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEccccc--------c
Confidence 66654 8899999999964211 111111 2 2344555543 578888755311 1
Q ss_pred hccccceEEecCCCcCchH---hHHHHHHh
Q 006587 264 VSGLVNMYRITGDDWDTWG---DVAAHFNV 290 (639)
Q Consensus 264 ~~~~an~wRis~Di~d~W~---~i~~~~~~ 290 (639)
.++|+.+-+ ++|+..+|+ .++.++..
T Consensus 219 sqry~~~~W-sGD~~s~W~~~~~L~~~i~~ 247 (317)
T cd06594 219 SQKYSTLFW-AGDQMVSWDAHDGLKSVVPG 247 (317)
T ss_pred ccccccccc-CCCCCCCCcCcccHHHHHHH
Confidence 135655422 589999998 46665543
No 25
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=99.07 E-value=1e-08 Score=110.26 Aligned_cols=199 Identities=16% Similarity=0.102 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCCh--HHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGF--TEVAKKV 127 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gm--k~lad~i 127 (639)
-++++|++.++.+.+. ..-.+.|.||.+|+.. ++.+..|+++||+ . +.++++|
T Consensus 21 ~~~~~v~~~~~~~r~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~~~mi~~L 75 (339)
T cd06602 21 KNVDEVKEVVENMRAA--GIPLDVQWNDIDYMDR-----------------RRDFTLDPVRFPG------LKMPEFVDEL 75 (339)
T ss_pred CCHHHHHHHHHHHHHh--CCCcceEEECcccccC-----------------ccceecccccCCC------ccHHHHHHHH
Confidence 4789999999876542 2336889999999853 4789999999997 6 9999999
Q ss_pred HHcCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCCCceeecCCchHHHHHHHHHH
Q 006587 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (639)
Q Consensus 128 h~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~ 206 (639)
|++|+|+-+|+.|++.......+.+. |.+. ..++.+++.........+.++.-..+|.++|++++|+.+.+
T Consensus 76 ~~~G~k~~~~i~P~v~~~~~~~~~~~--------~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 76 HANGQHYVPILDPAISANEPTGSYPP--------YDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHCCCEEEEEEeCccccCcCCCCCHH--------HHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 99999999999998853211112221 2110 11233333222222222233333458999999999998888
Q ss_pred HH-HHhhCCCEEEecCCCCCCC---C----hHHHHHHHHHHHh-c-CCCeEEEcCCCCCCChhhhhhhccccceEEecCC
Q 006587 207 QQ-YAEWGVDFVKHDCVFGDDL---D----INEISFVSEVLKE-L-DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGD 276 (639)
Q Consensus 207 ~~-~a~WGvDylK~D~~~~~~~---~----~~~~~~m~~al~~-~-Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~D 276 (639)
+. +.+.|||++|.|+.-...+ + ...-++..+++++ . .||++++=+.... .+.|+-. -++|
T Consensus 148 ~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G--------~qry~~~--w~GD 217 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRPFVISRSTFPG--------SGRYAGH--WLGD 217 (339)
T ss_pred HHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCCEEEEecCccc--------cccccee--ECCC
Confidence 76 5679999999998532111 1 0111234455544 3 3688887553111 1234423 3679
Q ss_pred CcCchHhHHHHHHhh
Q 006587 277 DWDTWGDVAAHFNVS 291 (639)
Q Consensus 277 i~d~W~~i~~~~~~~ 291 (639)
+..+|+.++.++...
T Consensus 218 ~~s~W~~L~~~i~~~ 232 (339)
T cd06602 218 NASTWEDLRYSIIGM 232 (339)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999988776543
No 26
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.06 E-value=4.9e-09 Score=111.85 Aligned_cols=197 Identities=16% Similarity=0.224 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-++++|++.++.+.+. ....+.|.||..|+... .++.+..|++|||+ ++.++++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~~---------------~~~~f~~d~~~FPd------p~~mi~~L~~ 77 (319)
T cd06591 21 KTQEELLDVAKEYRKR--GIPLDVIVQDWFYWPKQ---------------GWGEWKFDPERFPD------PKAMVRELHE 77 (319)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEechhhcCC---------------CceeEEEChhhCCC------HHHHHHHHHH
Confidence 4899999999876542 34478999998887531 13589999999996 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCCCceeecCCchHHHHHHHH-HHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRS-LYQ 207 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~-~~~ 207 (639)
+|+|+-+++.|++.. +++. |.+. ..++.+++....... .+.++....+|.+||++++|+.+ +.+
T Consensus 78 ~G~kv~~~i~P~v~~-----~~~~--------y~e~~~~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 78 MNAELMISIWPTFGP-----ETEN--------YKEMDEKGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred CCCEEEEEecCCcCC-----CChh--------HHHHHHCCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 999999999998742 2222 2211 112333332221111 12233345699999999998754 445
Q ss_pred HHHhhCCCEEEecCCCCC---C--------C---ChH----HH-----HHHHHHHHhc---CCCeEEEcCCCCCCChhhh
Q 006587 208 QYAEWGVDFVKHDCVFGD---D--------L---DIN----EI-----SFVSEVLKEL---DRPIVYSLSPGTGVTPAMA 261 (639)
Q Consensus 208 ~~a~WGvDylK~D~~~~~---~--------~---~~~----~~-----~~m~~al~~~---Gr~i~lsls~g~~~~~~~a 261 (639)
.+.+.|||++|+|+.-.. . + +.. .| ++..+++++. .||++++=+...
T Consensus 144 ~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~------- 216 (319)
T cd06591 144 NYYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWA------- 216 (319)
T ss_pred HhhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEecccc-------
Confidence 688999999999985311 0 0 001 12 3355555544 478888755211
Q ss_pred hhhccccceEEecCCCcCchHhHHHHHHhhh
Q 006587 262 KEVSGLVNMYRITGDDWDTWGDVAAHFNVSR 292 (639)
Q Consensus 262 ~~~~~~an~wRis~Di~d~W~~i~~~~~~~~ 292 (639)
...+|+.+-. ++|...+|+.++..+....
T Consensus 217 -Gsqry~~~~W-~GD~~s~w~~L~~~i~~~l 245 (319)
T cd06591 217 -GSQRYGALVW-SGDIDSSWETLRRQIAAGL 245 (319)
T ss_pred -ccccccCcee-CCCccccHHHHHHHHHHHH
Confidence 0134543222 4799999999887765443
No 27
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.01 E-value=1e-08 Score=108.11 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-|+++|++.|+-+.+. ..-++.|.||..|+....... ..+.++.++-|+++||+ .+.|+++||+
T Consensus 22 ~s~~ev~~v~~~~r~~--~iP~D~i~lD~dw~~~~~~~~--------~~~~~~~ft~d~~~FPd------p~~mi~~Lh~ 85 (292)
T cd06595 22 YSDEEYLALMDRFKKH--NIPLDVLVIDMDWHVTDIPSK--------YGSGWTGYSWNRKLFPD------PEKLLQDLHD 85 (292)
T ss_pred CCHHHHHHHHHHHHHh--CCCccEEEEeccccccccccc--------ccCCcceeEEChhcCCC------HHHHHHHHHH
Confidence 4899999999876542 233689999999986421000 02467899999999996 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHH-HHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFL-RSLYQQ 208 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~-~~~~~~ 208 (639)
+|+|+-+++.|++. +.+..+ .|.+ .+++.. +.........+|.++|++++++ +.+.+.
T Consensus 86 ~G~k~v~~v~P~~~---~~~~~~--------~y~~-----~~~~~~-----~~~~~~~~~~~D~tnp~a~~~w~~~~~~~ 144 (292)
T cd06595 86 RGLKVTLNLHPADG---IRAHED--------QYPE-----MAKALG-----VDPATEGPILFDLTNPKFMDAYFDNVHRP 144 (292)
T ss_pred CCCEEEEEeCCCcc---cCCCcH--------HHHH-----HHHhcC-----CCcccCCeEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999752 111111 1221 011111 0001122346899999998854 777788
Q ss_pred HHhhCCCEEEecCCCC-----CCCChHH------HHHHHHHHHhcCCCeEEEcCCCCCCChhhhhhhccccceEEecCCC
Q 006587 209 YAEWGVDFVKHDCVFG-----DDLDINE------ISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDD 277 (639)
Q Consensus 209 ~a~WGvDylK~D~~~~-----~~~~~~~------~~~m~~al~~~Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di 277 (639)
+.+.|||+++.|+.-+ ....+.. |..+++ ..+||++++=|... ..++|+-.| ++|+
T Consensus 145 ~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~~---~~~r~f~lsRs~~~--------G~qry~~~W--sGD~ 211 (292)
T cd06595 145 LEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSAR---NGRRPLIFSRWAGL--------GSHRYPIGF--SGDT 211 (292)
T ss_pred HHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhhc---cCCCcEEEEeeccc--------CCCcCCCcc--CCCc
Confidence 8999999999997432 1122211 112211 34789999866311 124677677 7999
Q ss_pred cCchHhHHHHHH
Q 006587 278 WDTWGDVAAHFN 289 (639)
Q Consensus 278 ~d~W~~i~~~~~ 289 (639)
..+|+.+..++.
T Consensus 212 ~s~W~~l~~~i~ 223 (292)
T cd06595 212 IISWASLAFQPY 223 (292)
T ss_pred ccCHHHHHHHHH
Confidence 999999886554
No 28
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.97 E-value=5.2e-08 Score=101.34 Aligned_cols=169 Identities=20% Similarity=0.277 Sum_probs=114.3
Q ss_pred CCCCCceEec--CcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCc--ccC
Q 006587 32 RASSPPRGWN--SYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRM--IPD 107 (639)
Q Consensus 32 ~a~tPPmGWn--SW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l--~pd 107 (639)
-++.||. |. .|.+.....++++|++.++.+.+. ...++.|.||++|+.. ++.+ ..|
T Consensus 2 ~p~~~P~-wa~G~~~~~~~~~~~~~v~~~~~~~~~~--~iP~d~~~lD~~~~~~-----------------~~~f~~~~d 61 (265)
T cd06589 2 KPALPPK-WAFGYWLSRYGYGDQDKVLEVIDGMREN--DIPLDGFVLDDDYTDG-----------------YGDFTFDWD 61 (265)
T ss_pred CCCCCcH-HHHHHHHhcCCCCCHHHHHHHHHHHHHc--CCCccEEEECcccccC-----------------CceeeeecC
Confidence 3456675 42 454555567999999999876442 2347899999999865 2444 899
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCC
Q 006587 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHG 187 (639)
Q Consensus 108 ~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~ 187 (639)
+++||+ ++.++++||++|+|+.+|+.|++
T Consensus 62 ~~~Fpd------p~~~i~~l~~~g~~~~~~~~P~v--------------------------------------------- 90 (265)
T cd06589 62 AGKFPN------PKSMIDELHDNGVKLVLWIDPYI--------------------------------------------- 90 (265)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEeChhH---------------------------------------------
Confidence 999996 99999999999999999997743
Q ss_pred ceeecCCchHHHHHHHHHHHH-HHhhCCCEEEecCCCCCCC-------------ChHH----H-----HHHHHHHHhc--
Q 006587 188 FMSVNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCVFGDDL-------------DINE----I-----SFVSEVLKEL-- 242 (639)
Q Consensus 188 ~~~lD~t~p~~q~y~~~~~~~-~a~WGvDylK~D~~~~~~~-------------~~~~----~-----~~m~~al~~~-- 242 (639)
++|+.+.++. +.+.|||++|+|..-.... ...+ | +++.+++++.
T Consensus 91 -----------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~ 159 (265)
T cd06589 91 -----------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSK 159 (265)
T ss_pred -----------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcC
Confidence 3444444444 4899999999997532111 1111 1 3455666543
Q ss_pred -CCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHHhhh
Q 006587 243 -DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSR 292 (639)
Q Consensus 243 -Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~ 292 (639)
.||++++-+.... ..+|+-. -++|+..+|+.++.++....
T Consensus 160 ~~r~~~~sRs~~~G--------sqry~~~--W~GD~~stW~~l~~~i~~~l 200 (265)
T cd06589 160 NKRPFILSRSGYAG--------SQRYAGM--WSGDNTSTWGYLRSQIPAGL 200 (265)
T ss_pred CCCeEEEEcCCccc--------ccCcCce--eCCcccCCHHHHHHHHHHHH
Confidence 4688888663211 1345333 36799999999887765443
No 29
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.94 E-value=4e-08 Score=105.27 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-|+++|++.++.+.+. ..-++.|.||..|+.. ++.++.|+++||+ .+.++++||+
T Consensus 21 ~~~~ev~~v~~~~r~~--~IP~D~i~lDidy~~~-----------------~~~Ft~d~~~FPd------p~~mv~~L~~ 75 (332)
T cd06601 21 SNRSDLEEVVEGYRDN--NIPLDGLHVDVDFQDN-----------------YRTFTTNGGGFPN------PKEMFDNLHN 75 (332)
T ss_pred CCHHHHHHHHHHHHHc--CCCCceEEEcCchhcC-----------------CCceeecCCCCCC------HHHHHHHHHH
Confidence 4899999999876542 3346899999999743 5789999999996 8999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~ 209 (639)
+|+|..+++.|++.. |. .| + .+ + ..+|.+||++++|....++.+
T Consensus 76 ~G~klv~~i~P~i~~----------g~-----------~~-----------~--~~-~-~~pDftnp~ar~wW~~~~~~l 119 (332)
T cd06601 76 KGLKCSTNITPVISY----------GG-----------GL-----------G--SP-G-LYPDLGRPDVREWWGNQYKYL 119 (332)
T ss_pred CCCeEEEEecCceec----------Cc-----------cC-----------C--CC-c-eeeCCCCHHHHHHHHHHHHHH
Confidence 999999999998741 10 00 0 01 1 247999999999998888888
Q ss_pred HhhCCCEEEecCCCC------C---CC-----------------Ch-HH----H-----HHHHHHHHhc-----CCCeEE
Q 006587 210 AEWGVDFVKHDCVFG------D---DL-----------------DI-NE----I-----SFVSEVLKEL-----DRPIVY 248 (639)
Q Consensus 210 a~WGvDylK~D~~~~------~---~~-----------------~~-~~----~-----~~m~~al~~~-----Gr~i~l 248 (639)
.+-|||+++.|..-. . .+ .+ .+ | ++..+++++. .||+++
T Consensus 120 ~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~Rpfil 199 (332)
T cd06601 120 FDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFII 199 (332)
T ss_pred HhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEE
Confidence 889999999995310 0 00 00 11 1 2344455432 488998
Q ss_pred EcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHHhhh
Q 006587 249 SLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVSR 292 (639)
Q Consensus 249 sls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~~ 292 (639)
+=|... ..++|+-.| ++|+..+|+.++.++...-
T Consensus 200 tRS~~a--------GsqrY~~~W--sGDn~stW~~L~~si~~~L 233 (332)
T cd06601 200 GRGSYA--------GMQRFAGLW--TGDNSSSWDFLQINIAQVL 233 (332)
T ss_pred EecCcC--------ccCCcCcee--CCCcccCHHHHHHHHHHHH
Confidence 866311 124566554 6899999999887765433
No 30
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.8e-08 Score=118.04 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=140.5
Q ss_pred CCCCCCc---eEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEeccc-ccccccCCccccCCCcccccCCCCccc
Q 006587 31 VRASSPP---RGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYL-WYRRKVKGAYVDSLGFDVIDEWGRMIP 106 (639)
Q Consensus 31 ~~a~tPP---mGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdg-W~~~~~~~~~~~~~~~~~~D~~G~l~p 106 (639)
|-++.|| +| +.|-+....-+|+++++.++.+.+. +.-++.|.+|.. |. |.++.+..
T Consensus 256 Gkp~l~P~Wa~G-~~~~~~~~~~~e~~v~~~i~~~~~~--~IP~d~~~lD~~~~~-----------------~~~~~F~w 315 (772)
T COG1501 256 GKPPLPPKWALG-WLWTSRYTYYDEDEVLEFIDEMRER--DIPLDVFVLDIDFWM-----------------DNWGDFTW 315 (772)
T ss_pred CCCCCCCceecC-CCceeccccccHHHHHHHHhhcccc--cCcceEEEEeehhhh-----------------ccccceEE
Confidence 3445566 67 2333344456799999999987654 344689999985 64 34688999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCcccccccccccc-ccccccC
Q 006587 107 DPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKE-RACAWMQ 185 (639)
Q Consensus 107 d~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~-~~c~~~~ 185 (639)
|+.+||+ .|.|.+++|++|+|+=+|+.|.+.. ++++... ....+|.+++..... ..+.|.
T Consensus 316 d~~~FP~------pk~mi~~l~~~Gikl~~~i~P~i~~-----d~~~~~e-------~~~~Gy~~k~~~g~~~~~~~w~- 376 (772)
T COG1501 316 DPDRFPD------PKQMIAELHEKGIKLIVIINPYIKQ-----DSPLFKE-------AIEKGYFVKDPDGEIYQADFWP- 376 (772)
T ss_pred CcccCCC------HHHHHHHHHhcCceEEEEecccccc-----CCchHHH-------HHHCCeEEECCCCCEeeecccC-
Confidence 9999997 8999999999999999999997742 2222111 012245555553221 122332
Q ss_pred CCceeecCCchHHHHHHHH-HHHHHHhhCCCEEEecCCCCC---------CCChHH---------HHHHHHHHHhc---C
Q 006587 186 HGFMSVNTKLGAGRAFLRS-LYQQYAEWGVDFVKHDCVFGD---------DLDINE---------ISFVSEVLKEL---D 243 (639)
Q Consensus 186 ~~~~~lD~t~p~~q~y~~~-~~~~~a~WGvDylK~D~~~~~---------~~~~~~---------~~~m~~al~~~---G 243 (639)
+.-..+|+++|++++|+.+ ..+.+.+.|||.++.|+.-.. ..+.++ .++..+++++. .
T Consensus 377 ~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~ 456 (772)
T COG1501 377 GNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNE 456 (772)
T ss_pred CcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCC
Confidence 2224589999999999984 556799999999999985321 112221 25667777766 5
Q ss_pred CCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHH
Q 006587 244 RPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFN 289 (639)
Q Consensus 244 r~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~ 289 (639)
||++|+=|.... .+.++-+| ++|+...|++++.++-
T Consensus 457 r~~~lsRsg~aG--------~Q~~~~~W--sGD~~s~wd~l~~si~ 492 (772)
T COG1501 457 RPFILSRSGYAG--------SQRYAAHW--SGDNRSSWDSLRESIP 492 (772)
T ss_pred ceEEEEeccccc--------ceecccee--CCccccchHHHHhhHH
Confidence 889998663111 12445555 6899999999887654
No 31
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.88 E-value=9.3e-08 Score=102.94 Aligned_cols=195 Identities=15% Similarity=0.145 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-|+++|++.++.+.+. ..-.+.|.||..|+.. ++.+..|++|||+ .+.++++||+
T Consensus 21 ~~~~ev~~~~~~~~~~--~iP~d~i~lD~~~~~~-----------------~~~f~~d~~~FPd------p~~mi~~L~~ 75 (339)
T cd06603 21 KDQEDVKEVDAGFDEH--DIPYDVIWLDIEHTDG-----------------KRYFTWDKKKFPD------PEKMQEKLAS 75 (339)
T ss_pred CCHHHHHHHHHHHHHc--CCCceEEEEChHHhCC-----------------CCceEeCcccCCC------HHHHHHHHHH
Confidence 5899999999876542 2336899999999743 3678889999996 9999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCccccc-Cccccccccccccc-cccccCCCceeecCCchHHHHHHHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKER-ACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~-~c~~~~~~~~~lD~t~p~~q~y~~~~~~ 207 (639)
+|+|+-+|+.|++.. .+++++ |.+. ..++.+++...... .+.| ++.-..+|.++|++++|+.+.++
T Consensus 76 ~G~k~~~~~~P~v~~---~~~~~~--------y~e~~~~g~~vk~~~g~~~~~~~w-~g~~~~~Dftnp~a~~ww~~~~~ 143 (339)
T cd06603 76 KGRKLVTIVDPHIKR---DDGYYV--------YKEAKDKGYLVKNSDGGDFEGWCW-PGSSSWPDFLNPEVRDWWASLFS 143 (339)
T ss_pred CCCEEEEEecCceec---CCCCHH--------HHHHHHCCeEEECCCCCEEEEEEC-CCCcCCccCCChhHHHHHHHHHH
Confidence 999999999998742 112222 2210 11244444322221 1223 33234589999999999988777
Q ss_pred HHH---hhCCCEEEecCCCCC---------C--------CChHH----H-----HHHHHHHHhc----CCCeEEEcCCCC
Q 006587 208 QYA---EWGVDFVKHDCVFGD---------D--------LDINE----I-----SFVSEVLKEL----DRPIVYSLSPGT 254 (639)
Q Consensus 208 ~~a---~WGvDylK~D~~~~~---------~--------~~~~~----~-----~~m~~al~~~----Gr~i~lsls~g~ 254 (639)
.+. +-|++++++|..-.. + ....+ | ++..+++.+. .||++++=+...
T Consensus 144 ~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~ 223 (339)
T cd06603 144 YDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFA 223 (339)
T ss_pred HHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 654 469999999964210 0 01111 2 2344555432 478888765311
Q ss_pred CCChhhhhhhccccceEEecCCCcCchHhHHHHHHhh
Q 006587 255 GVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNVS 291 (639)
Q Consensus 255 ~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~~ 291 (639)
. .++|+-. -++|+..+|+.++.++...
T Consensus 224 G--------~qry~~~--W~GD~~s~W~~L~~~i~~~ 250 (339)
T cd06603 224 G--------SQRYAAI--WTGDNTATWEHLKISIPML 250 (339)
T ss_pred c--------ccceeee--eCCCccCCHHHHHHHHHHH
Confidence 1 1345433 3679999999988876543
No 32
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.87 E-value=1.9e-07 Score=110.93 Aligned_cols=211 Identities=16% Similarity=0.178 Sum_probs=131.1
Q ss_pred CCCCCCce---Ee--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcc
Q 006587 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (639)
Q Consensus 31 ~~a~tPPm---GW--nSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~ 105 (639)
|-++.||. |+ |-|. .-|++++++.++.+.+. ..-++.|.+|..|+. .++.++
T Consensus 178 Grp~mpP~WALGy~qSR~~----Y~sq~eV~eva~~fre~--~IP~DvIwlDidYm~-----------------g~~~FT 234 (978)
T PLN02763 178 GTVFMPPKWALGYQQCRWS----YESAKRVAEIARTFREK--KIPCDVVWMDIDYMD-----------------GFRCFT 234 (978)
T ss_pred CCCCCCchHHhheeeccCC----CCCHHHHHHHHHHHHHc--CCCceEEEEehhhhc-----------------CCCcee
Confidence 55667774 32 2222 24789999999877542 334689999988863 246789
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccC
Q 006587 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ 185 (639)
Q Consensus 106 pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~ 185 (639)
.|+++||+ .+.|++++|++|+|.-.++.|++.. +++-++..+. ...++..++.......-.+.|
T Consensus 235 wD~~rFPd------P~~mv~~Lh~~G~kvv~iidPgI~~---d~gY~~y~eg-------~~~~~fvk~~~G~~y~G~vWp 298 (978)
T PLN02763 235 FDKERFPD------PKGLADDLHSIGFKAIWMLDPGIKA---EEGYFVYDSG-------CENDVWIQTADGKPFVGEVWP 298 (978)
T ss_pred ECcccCCC------HHHHHHHHHHCCCEEEEEEcCCCcc---CCCCHHHHhH-------hhcCeeEECCCCCeeEeeecC
Confidence 99999996 9999999999999998888998742 1111111100 001111222111111111223
Q ss_pred CCceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCC------------C-----------ChHH----H-----H
Q 006587 186 HGFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD------------L-----------DINE----I-----S 233 (639)
Q Consensus 186 ~~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~------------~-----------~~~~----~-----~ 233 (639)
+....+|.++|++++|.....+.|.+.|||+++.|..-... + ...+ | +
T Consensus 299 G~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~gG~~~h~~~HNlYgll~ak 378 (978)
T PLN02763 299 GPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELGGVQNHSHYHNVYGMLMAR 378 (978)
T ss_pred CCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccCCccCHHHHhhhhHHHHHH
Confidence 33345899999999999999999999999999999742100 0 0111 1 2
Q ss_pred HHHHHHHh---cCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHHHHHh
Q 006587 234 FVSEVLKE---LDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAAHFNV 290 (639)
Q Consensus 234 ~m~~al~~---~Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~~~~~ 290 (639)
+..+++++ -.||++++=|.... .+.|+-.| ++|...+|+.+..++-.
T Consensus 379 atyEgl~~~~~~kRPFilTRSgfaG--------sQRYaa~W--tGDn~SsWe~L~~sI~~ 428 (978)
T PLN02763 379 STYEGMLLANKNKRPFVLTRAGFIG--------SQRYAATW--TGDNLSNWEHLHMSIPM 428 (978)
T ss_pred HHHHHHHHhCCCCCcEEEEccccCc--------CCCCceEE--CCCccCCHHHHHHHHHH
Confidence 33444433 24899988663111 13455444 68999999998776543
No 33
>PRK10426 alpha-glucosidase; Provisional
Probab=98.75 E-value=2.9e-07 Score=106.65 Aligned_cols=217 Identities=13% Similarity=0.134 Sum_probs=128.7
Q ss_pred CCCCCCceEecC---cccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccC
Q 006587 31 VRASSPPRGWNS---YDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD 107 (639)
Q Consensus 31 ~~a~tPPmGWnS---W~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd 107 (639)
|-++.||. |.= |..+. -++++|++.++.+.+. ..-.+.|.|| .|+..... +.| ...++.++.|
T Consensus 199 Gr~p~~P~-Wal~G~~~g~~--~~~~~v~~v~~~~r~~--~IP~d~i~ld-dw~~~~~~-----~~g---~~~~~~~~~d 264 (635)
T PRK10426 199 GRQPELPD-WAYDGVTLGIQ--GGTEVVQKKLDTMRNA--GVKVNGIWAQ-DWSGIRMT-----SFG---KRLMWNWKWD 264 (635)
T ss_pred CCCCCCCh-hhccCcccccc--CCHHHHHHHHHHHHHc--CCCeeEEEEe-cccccccc-----ccc---ccccccceEC
Confidence 45566774 432 22222 2577888888766442 2225788888 49853110 000 1123457889
Q ss_pred CCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCccccc-CccccccccccccccccccCC
Q 006587 108 PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACAWMQH 186 (639)
Q Consensus 108 ~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~~~~~ 186 (639)
+++||+ .+.++++||++|+|+=+|+.|++.. ++++ |.+. ..++.+++.......-.+.+.
T Consensus 265 ~~~FPd------p~~mi~~L~~~G~k~v~~i~P~v~~-----~~~~--------y~e~~~~gy~vk~~~g~~~~~~~~~~ 325 (635)
T PRK10426 265 SERYPQ------LDSRIKQLNEEGIQFLGYINPYLAS-----DGDL--------CEEAAEKGYLAKDADGGDYLVEFGEF 325 (635)
T ss_pred hhhCCC------HHHHHHHHHHCCCEEEEEEcCccCC-----CCHH--------HHHHHHCCcEEECCCCCEEEeEecCC
Confidence 999996 9999999999999999999998742 2322 2221 123444443222111111122
Q ss_pred CceeecCCchHHHHHHHHHH-HHHHhhCCCEEEecCCCC--------CCCChHH----H-----HHHHHHHHhc---CCC
Q 006587 187 GFMSVNTKLGAGRAFLRSLY-QQYAEWGVDFVKHDCVFG--------DDLDINE----I-----SFVSEVLKEL---DRP 245 (639)
Q Consensus 187 ~~~~lD~t~p~~q~y~~~~~-~~~a~WGvDylK~D~~~~--------~~~~~~~----~-----~~m~~al~~~---Gr~ 245 (639)
.-..+|.++|++++|+.+.+ +.+.+.|||.+|.|+.-. ...+..+ | ++..+++++. +||
T Consensus 326 ~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~ 405 (635)
T PRK10426 326 YAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEI 405 (635)
T ss_pred CceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 22469999999999997766 468899999999997321 1112221 2 2344555543 588
Q ss_pred eEEEcCCCCCCChhhhhhhccccc-eEEecCCCcCchH---hHHHHHHh
Q 006587 246 IVYSLSPGTGVTPAMAKEVSGLVN-MYRITGDDWDTWG---DVAAHFNV 290 (639)
Q Consensus 246 i~lsls~g~~~~~~~a~~~~~~an-~wRis~Di~d~W~---~i~~~~~~ 290 (639)
++++=+... ..++|+. .| ++|...+|+ .++.++..
T Consensus 406 f~ltRsg~a--------GsQry~~~~W--sGD~~ssW~~~d~L~~~I~~ 444 (635)
T PRK10426 406 LFFMRAGYT--------GSQKYSTLFW--AGDQNVDWSLDDGLASVVPA 444 (635)
T ss_pred EEEEccccC--------CcCCcccccc--CCCCCCcCcChhHHHHHHHH
Confidence 888765311 1135554 45 689999996 56655543
No 34
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.27 E-value=2.4e-06 Score=76.09 Aligned_cols=97 Identities=21% Similarity=0.354 Sum_probs=71.1
Q ss_pred ceeeccCCCccc--cccccc----ccccc----cceEEEEeccCCCcccccCCCccccccccccceeccCCC-CCCCcee
Q 006587 459 PLCLYKSRALLS--SDGEMI----YKQQY----QGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQ 527 (639)
Q Consensus 459 ~~Cl~~~~~~~~--~~~~~~----~~q~~----~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~ 527 (639)
.+||+....... ...+.| .+|.| .+.+++.+ .+.||++.... .+..+.++.|+. ..+|+|+
T Consensus 10 ~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~---~~~Cl~~~~~~-----~~~~~~~~~c~~~~~~Q~W~ 81 (124)
T cd00161 10 GLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKS---SNLCLDVGGDA-----PGSKVRLYTCSGGSDNQRWT 81 (124)
T ss_pred CeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcC---CCeEEcccCCC-----CCCEEEEEECCCCCcCCEEE
Confidence 358877664321 235556 37888 46677643 57999986532 467788999998 8899999
Q ss_pred eCCCCceeccCcCceeEecccccccCCCCeeEEEEeCC
Q 006587 528 LNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGR 565 (639)
Q Consensus 528 ~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~ 565 (639)
+.++|.|++..+++||++.+... +++...+|.+...
T Consensus 82 ~~~~~~i~~~~~~~cl~~~~~~~--~~~~v~~~~c~~~ 117 (124)
T cd00161 82 FNKDGTIRNLKSGKCLDVKGGNT--NGTNLILWTCDGG 117 (124)
T ss_pred ECCCcEEEECCCCeEEeCCCCCC--CCCEEEEEeCCCC
Confidence 99999999999999999987533 4566777777543
No 35
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=98.19 E-value=1.1e-05 Score=83.97 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=76.9
Q ss_pred cccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCC-cccCCCCCCCCCCCCChHHHHH
Q 006587 47 CWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGR-MIPDPDRWPSSRGGKGFTEVAK 125 (639)
Q Consensus 47 ~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~-l~pd~~rFP~~~~~~Gmk~lad 125 (639)
...+|.+..++-+|+- .++|++|+.||+||.....+ ...+ ..+. |. -.|+.|++
T Consensus 26 ~~g~~t~~~k~yIDfA----a~~G~eYvlvD~GW~~~~~~-------------~~~d~~~~~----~~----~dl~elv~ 80 (273)
T PF10566_consen 26 KHGATTETQKRYIDFA----AEMGIEYVLVDAGWYGWEKD-------------DDFDFTKPI----PD----FDLPELVD 80 (273)
T ss_dssp -BSSSHHHHHHHHHHH----HHTT-SEEEEBTTCCGS--T-------------TT--TT-B-----TT------HHHHHH
T ss_pred cCCCCHHHHHHHHHHH----HHcCCCEEEecccccccccc-------------ccccccccC----Cc----cCHHHHHH
Confidence 3368999999999974 45899999999999863210 1111 1111 11 25999999
Q ss_pred HHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHH
Q 006587 126 KVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSL 205 (639)
Q Consensus 126 ~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~ 205 (639)
|-++||.++=||..--.. +.. .+. +..++..
T Consensus 81 Ya~~KgVgi~lw~~~~~~-------------------------~~~-------------------~~~-----~~~~~~~ 111 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETG-------------------------GNV-------------------ANL-----EKQLDEA 111 (273)
T ss_dssp HHHHTT-EEEEEEECCHT-------------------------TBH-------------------HHH-----HCCHHHH
T ss_pred HHHHcCCCEEEEEeCCcc-------------------------hhh-------------------HhH-----HHHHHHH
Confidence 999999999888743110 000 000 1114677
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhc-CCCeEEEcC
Q 006587 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKEL-DRPIVYSLS 251 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~-Gr~i~lsls 251 (639)
+++|++|||.-||+||+..+ +.+.+.-++++++++ .+.+++...
T Consensus 112 f~~~~~~Gv~GvKidF~~~d--~Q~~v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 112 FKLYAKWGVKGVKIDFMDRD--DQEMVNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHHCTEEEEEEE--SST--SHHHHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHcCCCEEeeCcCCCC--CHHHHHHHHHHHHHHHHcCcEEEec
Confidence 89999999999999998652 233345555555533 346777765
No 36
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.18 E-value=2.5e-06 Score=75.98 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=62.1
Q ss_pred ceEEEEeccCCCcccccCCCccccccccccceeccCCCCCCCceeeCCCC----ceeccCcCceeEecccccccCCCCee
Q 006587 483 GKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSG----ALISSYSGLCATVNLVKADVGSGGIR 558 (639)
Q Consensus 483 ~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~~~Q~W~~~~~G----~l~~~~sg~Cl~v~~~~~~~~~~~~~ 558 (639)
+.++|.+. ..++||+...+.. .+|+.+..+.|++..+|+|++.+.| +|++..|++||||.+.... +++.++
T Consensus 15 g~Y~i~n~-~sg~~L~v~~~~~---~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~-~g~~v~ 89 (105)
T PF14200_consen 15 GYYKIRNV-NSGKYLDVAGGST---ANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTA-NGTNVQ 89 (105)
T ss_dssp TEEEEEET-TTTEEEEEGCTTC---STTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSS-TTEBEE
T ss_pred CEEEEEEC-CCCCEEEeCCCCc---CCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCC-CCCEEE
Confidence 45777765 6899999965433 3799999999999999999998877 7899999999999987543 888999
Q ss_pred EEEE
Q 006587 559 SWIA 562 (639)
Q Consensus 559 VW~~ 562 (639)
+|.+
T Consensus 90 ~~~~ 93 (105)
T PF14200_consen 90 QWEY 93 (105)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 9997
No 37
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.09 E-value=8e-06 Score=72.88 Aligned_cols=92 Identities=22% Similarity=0.369 Sum_probs=66.0
Q ss_pred eeeccCCCcccccccccc----cccc----cceEEEEeccCCCcccccCCCccccccccccceeccCCC-CCCCceeeCC
Q 006587 460 LCLYKSRALLSSDGEMIY----KQQY----QGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNP 530 (639)
Q Consensus 460 ~Cl~~~~~~~~~~~~~~~----~q~~----~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~~~~ 530 (639)
+||+..........+.|. +|.| .+.+++. .++|||+.+... ..+.++.|++ ..+|+|.+..
T Consensus 8 ~Cl~~~~~~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~----~~~Cl~~~~~~~------~~v~l~~c~~~~~~Q~W~~~~ 77 (117)
T smart00458 8 KCLDVNGNSNPVGLFDCHGTGGNQLWKLTSDGAIRIA----TDLCLTANGNTG------STVTLYSCDGDADNQYWTVNK 77 (117)
T ss_pred ccEecCCCCceEEEEeCCCCCccceEEEeCCCeEEec----CCccCccCCCCC------CEEEEEECCCCCcCCEEEECC
Confidence 588776654223455563 5888 3555553 679999865321 4578899998 8999999999
Q ss_pred CCceeccCcCceeEecccccccCCCCeeEEEEeC
Q 006587 531 SGALISSYSGLCATVNLVKADVGSGGIRSWIATG 564 (639)
Q Consensus 531 ~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l 564 (639)
+|.|++..+++|||+...... .++.+|.+..
T Consensus 78 ~~~i~~~~~~~cl~~~~~~~~---~~~~~~~c~~ 108 (117)
T smart00458 78 DGTIRNPDSGLCLDVKDGNTG---TKVILWTCNG 108 (117)
T ss_pred CeeEEeCCCCEEEecCCCCCC---ceEEEEeCCC
Confidence 999999999999999864221 3567777654
No 38
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.02 E-value=6.2e-06 Score=74.14 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=66.7
Q ss_pred cceeeccCC-Ccc--ccccccc---ccccc--cceEEEEeccCCCcccccCCCccccccccccceeccCCCC-CCCceee
Q 006587 458 EPLCLYKSR-ALL--SSDGEMI---YKQQY--QGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQL 528 (639)
Q Consensus 458 ~~~Cl~~~~-~~~--~~~~~~~---~~q~~--~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~-~~Q~W~~ 528 (639)
..+||+... ... ......| .+|.| ....+|........||++..+. ++..+.++.|+.. .+|+|.+
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~-----~~~~i~l~~C~~~~~~Q~W~~ 85 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSS-----PGTKIVLWPCDSNSSNQRWKF 85 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSS-----TTEBEEEEETTTTGGGGBEEE
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccC-----CCceEEEeeccCCccCCeEEE
Confidence 346887771 111 1245555 47888 2333444444455599997654 5778999999875 5599999
Q ss_pred CCCCceeccCcCceeEecccccccCCCCeeEEEE
Q 006587 529 NPSGALISSYSGLCATVNLVKADVGSGGIRSWIA 562 (639)
Q Consensus 529 ~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~ 562 (639)
.+++.|++..+++||++.+.. ++++..++.|
T Consensus 86 ~~~~~i~n~~s~~cL~~~~~~---~~~~l~~~~c 116 (124)
T PF00652_consen 86 DPDGRIRNKNSGLCLDVKGGS---DGNPLVLWPC 116 (124)
T ss_dssp ETTSBEEETTTTEEEEEGGGS---TTEBEEEEE-
T ss_pred cCCeeEEeCCCCEEEEecCCC---CCCEEEEEEC
Confidence 999999999999999998753 4566777766
No 39
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.00025 Score=82.34 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=100.0
Q ss_pred EecCccccc--ccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 39 GWNSYDSFC--WTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 39 GWnSW~~~~--~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
-|+-+..+. ...+.+++++.++.+.+ ...+++.+.+|+-|+ |++++++.|+.+||.
T Consensus 295 YWslGf~~~RwgY~nls~~~dvv~~~~~--agiPld~~~~DiDyM-----------------d~ykDFTvd~~~fp~--- 352 (805)
T KOG1065|consen 295 YWSLGFQLCRWGYKNLSVVRDVVENYRA--AGIPLDVIVIDIDYM-----------------DGYKDFTVDKVWFPD--- 352 (805)
T ss_pred hhhccceecccccccHHHHHHHHHHHHH--cCCCcceeeeehhhh-----------------hcccceeeccccCcc---
Confidence 499887654 35788889988886532 234578999999886 456899999999994
Q ss_pred CCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCccccc-Ccccccccccccccccc-ccCCCceeecCC
Q 006587 117 GKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDS-GRQWRAKDIGLKERACA-WMQHGFMSVNTK 194 (639)
Q Consensus 117 ~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~-g~~~~~~di~~~~~~c~-~~~~~~~~lD~t 194 (639)
|+.+++.||+.|+|.=+.+.|++.+-.. .+ .|++. ..+...++.....+.-+ -.|+.-+..|.+
T Consensus 353 ---~~~fv~~Lh~~G~kyvliidP~is~~~~------y~-----~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDft 418 (805)
T KOG1065|consen 353 ---LKDFVDDLHARGFKYVLIIDPFISTNSS------YG-----PYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFT 418 (805)
T ss_pred ---hHHHHHHHHhCCCeEEEEeCCccccCcc------ch-----hhhhhhhhceeeecccCchhhhcccCCCcccccccC
Confidence 9999999999999999999999964211 11 11110 00111111111110111 123334568999
Q ss_pred chHHHHHHHHHHHHHH-hhCCCEEEecC
Q 006587 195 LGAGRAFLRSLYQQYA-EWGVDFVKHDC 221 (639)
Q Consensus 195 ~p~~q~y~~~~~~~~a-~WGvDylK~D~ 221 (639)
+|.+++|...-++.|. +-+||.+++|.
T Consensus 419 np~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 419 NPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred CchHHHHHHHHHHhhcccCCccceEEEC
Confidence 9999999866667776 69999999995
No 40
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=97.59 E-value=0.00015 Score=64.46 Aligned_cols=64 Identities=25% Similarity=0.454 Sum_probs=52.0
Q ss_pred CCcccccCCCccccccccccceeccCCCC-CCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeC
Q 006587 493 VGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATG 564 (639)
Q Consensus 493 ~~~CLda~~~~~~t~~~~~~~~~~~C~~~-~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l 564 (639)
.++|||+.++. ++..+.++.|++. .+|+|.+..+|.+....+++||++.+.. +++...+|.+..
T Consensus 9 ~~~cL~~~~~~-----~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~---~~~~~~~~~c~~ 73 (124)
T cd00161 9 TGLCLDVNGGS-----DGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDA---PGSKVRLYTCSG 73 (124)
T ss_pred CCeEEECCCCC-----CCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCC---CCCEEEEEECCC
Confidence 68999986532 4667889999997 9999999999999888899999997642 356677777765
No 41
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=97.32 E-value=0.00035 Score=62.15 Aligned_cols=61 Identities=26% Similarity=0.521 Sum_probs=48.7
Q ss_pred CCCcccccCCCccccccccccceeccCCC-CCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeC
Q 006587 492 GVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATG 564 (639)
Q Consensus 492 ~~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l 564 (639)
..++|||+.++. ..+.++.|++ ..+|+|++..+|.|+.. +++||++.+... ++.++|.+..
T Consensus 5 ~~~~Cl~~~~~~-------~~v~l~~c~~~~~~Q~w~~~~~g~~~~~-~~~Cl~~~~~~~----~~v~l~~c~~ 66 (117)
T smart00458 5 NTGKCLDVNGNS-------NPVGLFDCHGTGGNQLWKLTSDGAIRIA-TDLCLTANGNTG----STVTLYSCDG 66 (117)
T ss_pred cCCccEecCCCC-------ceEEEEeCCCCCccceEEEeCCCeEEec-CCccCccCCCCC----CEEEEEECCC
Confidence 367899997643 3577899999 89999999999999988 999999987521 4567777765
No 42
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.02 E-value=0.00073 Score=60.58 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=53.8
Q ss_pred eEEEEeccCCCcccccCCCccccccccccceeccCCCCCCCceeeCCCCceeccCcC-ceeEecccccccCCCCeeEEEE
Q 006587 484 KVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQMWQLNPSGALISSYSG-LCATVNLVKADVGSGGIRSWIA 562 (639)
Q Consensus 484 ~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~~~Q~W~~~~~G~l~~~~sg-~Cl~v~~~~~~~~~~~~~VW~~ 562 (639)
.+++.+. .++||+..+. ...+..+.+++|.+..+|+|.+..+|.+...... +||++.+.. +++.+.++.|
T Consensus 4 ~i~~~~~--~~~cl~~~~~----~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~---~~~~i~l~~C 74 (124)
T PF00652_consen 4 YIRNVNK--SGLCLDVQGS----TKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSS---PGTKIVLWPC 74 (124)
T ss_dssp EEEEEEG--GGEEEEEGGS----SSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSS---TTEBEEEEET
T ss_pred EEEEeeC--CCCeEEEcCC----CCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccC---CCceEEEeec
Confidence 3444332 7899999822 2368889999999999999999999999998875 699999874 3456666766
Q ss_pred eCC
Q 006587 563 TGR 565 (639)
Q Consensus 563 ~l~ 565 (639)
...
T Consensus 75 ~~~ 77 (124)
T PF00652_consen 75 DSN 77 (124)
T ss_dssp TTT
T ss_pred cCC
Confidence 653
No 43
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.00075 Score=71.96 Aligned_cols=272 Identities=21% Similarity=0.193 Sum_probs=161.2
Q ss_pred HHhhCCCEEEecCCCCCCCChHH--HHHHHHHHHhcCCCeEEEcCCCCCCChhhhhhhccccceEEecCCCcCchHhHHH
Q 006587 209 YAEWGVDFVKHDCVFGDDLDINE--ISFVSEVLKELDRPIVYSLSPGTGVTPAMAKEVSGLVNMYRITGDDWDTWGDVAA 286 (639)
Q Consensus 209 ~a~WGvDylK~D~~~~~~~~~~~--~~~m~~al~~~Gr~i~lsls~g~~~~~~~a~~~~~~an~wRis~Di~d~W~~i~~ 286 (639)
+.+|++++.++||...+..-.+| |..|.+++.+.|- .-+.+-||.-| |.|..+.+
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~---------------------~~vGY~yi~iD--DCW~e~~R 93 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGL---------------------ADVGYEYINID--DCWSEVTR 93 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhHH---------------------HhcCcEEEech--hhhhhhcc
Confidence 88999999999998765544444 6778887766541 12356677767 78888877
Q ss_pred HHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCceecCCCCCCCH
Q 006587 287 HFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEGPHRTCNLNLDEQRTQMTLWAMAKSPLMFGGDVRKLDE 366 (639)
Q Consensus 287 ~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g~~~~~~lT~~E~rt~~tlWa~~~sPLiig~Dl~~l~~ 366 (639)
..+. +--+.....+.-......|.+-++|.+|...|.| ++.| ++..+ +.+..|..+.++...|.|+.++|.
T Consensus 94 d~~g-rLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G-----~~TC-~g~PG--S~~~e~~DA~tFA~WgvDylKlD~ 164 (414)
T KOG2366|consen 94 DSDG-RLVADPSRFPSGIKALADYVHSKGLKLGIYSDAG-----NFTC-AGYPG--SLGHEESDAKTFADWGVDYLKLDG 164 (414)
T ss_pred CCcc-ccccChhhcccchhhhhhchhhcCCceeeeeccC-----chhh-ccCCc--ccchhhhhhhhhHhhCCcEEeccc
Confidence 6554 2111111111000011358999999999987643 3345 66666 899999999999999999999999
Q ss_pred HHHhhccChhhhhhccCCCCCCCcceeecccC--CCCccc----cCCCCCcccccccceeeccccCCCCCCCCccccccc
Q 006587 367 TTYSLITNPTVLEINTFSSNNKEFPYIIGTKG--NTRKIK----VTPPHLSEVAESNTHVLGLTSCKDPKANSWSIQAHD 440 (639)
Q Consensus 367 ~~l~lLtN~eviainQd~~~~~~~~~~~~~~~--~~~~~~----n~~s~~~~~~s~~~~~lgL~~c~~~~~d~Wt~~~~~ 440 (639)
-.-.++++++...++-+.+++.+++.+.+... +.++.. |-.. . -+-..+++ ..+..+|-|.+-.+.
T Consensus 165 C~~~~~~~~~~Yp~ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~--i----~~~~N~WR--~~dDI~dtW~Sv~~I 236 (414)
T KOG2366|consen 165 CFNNLITMPEGYPIMSRALNNTGRPIFYSLCSWPAYHPGLPHHPNYKN--I----STICNSWR--TTDDIQDTWKSVDSI 236 (414)
T ss_pred cccccccccccchhHHHHHhccCCceEEEeccCcccccCccCCCcchh--h----hhhhcccc--chhhhhhHHHHHHHH
Confidence 88899999999999999998888766554110 011000 0000 0 00000111 234555666655444
Q ss_pred cccceEEeeccCCCCCccceeeccCCCcccccccccccccccceEEEEeccCCCcccccCCCccccccccccceeccCCC
Q 006587 441 QELEEICWKGKSGNKIGEPLCLYKSRALLSSDGEMIYKQQYQGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKR 520 (639)
Q Consensus 441 ~~~~~i~~~~~~~~~~~~~~Cl~~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~ 520 (639)
- +-|||+..+=.....| |.--..--+..+--+...|+++++++|++-.-.- |-.+.-.+.++++.+.....+|--
T Consensus 237 ~--d~~~~nqd~~~~~agP-g~WNDpDmL~iGN~G~s~e~y~~qf~lWai~kAP--Llms~Dlr~is~~~~~il~nk~~I 311 (414)
T KOG2366|consen 237 I--DYICWNQDRIAPLAGP-GGWNDPDMLEIGNGGMSYEEYKGQFALWAILKAP--LLMSNDLRLISKQTKEILQNKEVI 311 (414)
T ss_pred H--HHHhhhhhhhccccCC-CCCCChhHhhcCCCCccHHHHHHHHHHHHHhhch--hhhccchhhcCHHHHHHhcChhhe
Confidence 2 4455543211111111 2211111111223333577777888877632211 455666666677777777788877
Q ss_pred CCCCc
Q 006587 521 DANQM 525 (639)
Q Consensus 521 ~~~Q~ 525 (639)
-.||+
T Consensus 312 aiNQD 316 (414)
T KOG2366|consen 312 AINQD 316 (414)
T ss_pred eccCC
Confidence 77775
No 44
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.75 E-value=0.0084 Score=53.16 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=48.0
Q ss_pred eeeccCCCcccc----ccccc---ccccc------cceEEEEeccCCCcccccCCCccccccccccceeccC-CCCCCCc
Q 006587 460 LCLYKSRALLSS----DGEMI---YKQQY------QGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKC-KRDANQM 525 (639)
Q Consensus 460 ~Cl~~~~~~~~~----~~~~~---~~q~~------~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C-~~~~~Q~ 525 (639)
.||++...+... ..+.| ++|+| .+.++|.+. ..++|||..++.. .+|+.++.|+| ++.++|+
T Consensus 26 ~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~-~s~~~Ldv~~~~~---~~g~~v~~~~~~~~~~~Q~ 101 (105)
T PF14200_consen 26 KYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNK-NSGKVLDVAGGST---ANGTNVQQWEYDNGSDNQQ 101 (105)
T ss_dssp EEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEET-STTEEEEEGGGSS---STTEBEEEEE-STSSGGGE
T ss_pred CEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEEC-CCCcEEEECCCCC---CCCCEEEEEeCCCCCccCE
Confidence 578777654321 34444 58999 367888877 5589999965443 37999999999 9999999
Q ss_pred eeeC
Q 006587 526 WQLN 529 (639)
Q Consensus 526 W~~~ 529 (639)
|+|.
T Consensus 102 W~l~ 105 (105)
T PF14200_consen 102 WKLE 105 (105)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9983
No 45
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.017 Score=65.95 Aligned_cols=78 Identities=26% Similarity=0.487 Sum_probs=57.6
Q ss_pred cceeeccCCCc----ccccccccc----cccc----cceEEEEeccCCCcccccCCCccccccccccceeccCCCCCCCc
Q 006587 458 EPLCLYKSRAL----LSSDGEMIY----KQQY----QGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDANQM 525 (639)
Q Consensus 458 ~~~Cl~~~~~~----~~~~~~~~~----~q~~----~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~~~Q~ 525 (639)
..+|+|..... .......|. +|.| ++++|. ++.||+... .++ |++..|...+||.
T Consensus 463 ~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~-----~~~cl~~~~-------~~~-v~l~~C~~~~~q~ 529 (578)
T KOG3736|consen 463 PNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRI-----GDLCLDVDD-------AGK-VTLYDCHKMGNQL 529 (578)
T ss_pred cchhhhhhchhccCCCcceEecCCCccccccccccCCcceEE-----CCEEecccc-------CCc-eEEEecccccccc
Confidence 33566544411 223555663 5777 678887 669999851 233 7899998877999
Q ss_pred eeeCCCCceeccCcCceeEeccc
Q 006587 526 WQLNPSGALISSYSGLCATVNLV 548 (639)
Q Consensus 526 W~~~~~G~l~~~~sg~Cl~v~~~ 548 (639)
|.++.+|+|++..||+||++...
T Consensus 530 w~~~~~~~i~~~~sg~CL~~~~~ 552 (578)
T KOG3736|consen 530 WHYDKDGTLYHRNSGKCLEAAVD 552 (578)
T ss_pred eEEcCCCceEcCCCCccccccCC
Confidence 99999999999999999999865
No 46
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.25 E-value=0.2 Score=51.87 Aligned_cols=105 Identities=21% Similarity=0.412 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHH
Q 006587 119 GFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAG 198 (639)
Q Consensus 119 Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~ 198 (639)
.|+.++||++++|++.|+|+..+.
T Consensus 76 ~l~~~~~~~~~~g~~~glwt~~~l-------------------------------------------------------- 99 (261)
T cd06596 76 NLKEVVDYLHANGVETGLWTQSGL-------------------------------------------------------- 99 (261)
T ss_pred HHHHHHHHHHHcCCccccccccch--------------------------------------------------------
Confidence 499999999999999999964321
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCC-CCCCC--hHHHHHHHHHHHhc--CCCeEEEcCCCCCCChhhhhhhccccceEEe
Q 006587 199 RAFLRSLYQQYAEWGVDFVKHDCVF-GDDLD--INEISFVSEVLKEL--DRPIVYSLSPGTGVTPAMAKEVSGLVNMYRI 273 (639)
Q Consensus 199 q~y~~~~~~~~a~WGvDylK~D~~~-~~~~~--~~~~~~m~~al~~~--Gr~i~lsls~g~~~~~~~a~~~~~~an~wRi 273 (639)
+.+.+....-|+.++|+|--. +..+. ....++..+++++. .||++++-|.... ...|+-.|
T Consensus 100 ----~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aG--------sQRy~~~W-- 165 (261)
T cd06596 100 ----RDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAG--------TQRYAGIW-- 165 (261)
T ss_pred ----hhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCccc--------cCCCCCcc--
Confidence 112244566789999999421 12222 23334455555443 4899999874211 12344343
Q ss_pred cCCCcCchHhHHHHHHhhhh
Q 006587 274 TGDDWDTWGDVAAHFNVSRD 293 (639)
Q Consensus 274 s~Di~d~W~~i~~~~~~~~~ 293 (639)
++|+..+|+.++.++-....
T Consensus 166 sGD~~stWe~Lr~sI~~~L~ 185 (261)
T cd06596 166 TGDQSGSWEYIRFHIPTYIG 185 (261)
T ss_pred CCCCcCcHHHHHHHHHHHHH
Confidence 68999999999887665443
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.15 E-value=0.28 Score=57.29 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecc-cccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDY-LWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDd-gW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
|...+.+. +...|+++|++.|.|=- ....... +-| +|..+...++ .+|.+ ...||.|++.+|+
T Consensus 154 ~~~~i~~~---l~dyl~~LGvt~i~L~Pi~e~~~~~------~wG---Y~~~~y~~~~-~~~Gt---~~dlk~lV~~~H~ 217 (613)
T TIGR01515 154 SYRELADQ---LIPYVKELGFTHIELLPVAEHPFDG------SWG---YQVTGYYAPT-SRFGT---PDDFMYFVDACHQ 217 (613)
T ss_pred CHHHHHHH---HHHHHHHcCCCEEEECCcccCCCCC------CCC---CCcccCcccc-cccCC---HHHHHHHHHHHHH
Confidence 44444444 32346889999998821 1111000 011 2333445565 35643 2369999999999
Q ss_pred cCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH
Q 006587 130 MGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (639)
Q Consensus 130 kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~ 209 (639)
+||+.=|-+.+.-. +... .... .|.. .+.|...+... .....|. -..+|..+|+|++|+-+.++.+
T Consensus 218 ~Gi~VilD~V~NH~--~~~~-~~~~------~~~~-~~~y~~~~~~~-~~~~~w~---~~~~~~~~~~Vr~~l~~~~~~W 283 (613)
T TIGR01515 218 AGIGVILDWVPGHF--PKDD-HGLA------EFDG-TPLYEHKDPRD-GEHWDWG---TLIFDYGRPEVRNFLVANALYW 283 (613)
T ss_pred CCCEEEEEecccCc--CCcc-chhh------ccCC-CcceeccCCcc-CcCCCCC---CceecCCCHHHHHHHHHHHHHH
Confidence 99999887655321 1100 0000 0000 00111111100 0011121 1247899999999998888876
Q ss_pred H-hhCCCEEEecCC
Q 006587 210 A-EWGVDFVKHDCV 222 (639)
Q Consensus 210 a-~WGvDylK~D~~ 222 (639)
. +.|||-+++|.+
T Consensus 284 ~~ey~iDG~R~D~v 297 (613)
T TIGR01515 284 AEFYHIDGLRVDAV 297 (613)
T ss_pred HHHhCCcEEEEcCH
Confidence 5 799999999974
No 48
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.49 E-value=0.36 Score=51.68 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCC------CC-CCChHHH
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSS------RG-GKGFTEV 123 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~------~~-~~Gmk~l 123 (639)
+++.+.+.++++ +.-|.+.++||= .|.+|.+..+. +-|.+ .. -..++.|
T Consensus 11 ~~~~~~~~~~~i----~~t~lNavVIDv-------------------Kdd~G~i~y~s-~~~~~~~~ga~~~~i~D~~~l 66 (316)
T PF13200_consen 11 SPERLDKLLDLI----KRTELNAVVIDV-------------------KDDDGNITYDS-QVPLAREIGAVKPYIKDLKAL 66 (316)
T ss_pred CHHHHHHHHHHH----HhcCCceEEEEE-------------------ecCCceEEecC-CCchhhhcccccccccCHHHH
Confidence 345555555554 566788999982 23445443321 11111 00 0269999
Q ss_pred HHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccC-CCceeecCCchHHHHHH
Q 006587 124 AKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQ-HGFMSVNTKLGAGRAFL 202 (639)
Q Consensus 124 ad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~-~~~~~lD~t~p~~q~y~ 202 (639)
++.+|++|+.+=-.+.-|-. . ++.. ..|+|..+..... .|.. .+..++||.++++++|.
T Consensus 67 ~~~l~e~gIY~IARIv~FkD-------~-~la~--------~~pe~av~~~~G~----~w~d~~~~~WvnP~~~evw~Y~ 126 (316)
T PF13200_consen 67 VKKLKEHGIYPIARIVVFKD-------P-VLAE--------AHPEWAVKTKDGS----VWRDNEGEAWVNPYSKEVWDYN 126 (316)
T ss_pred HHHHHHCCCEEEEEEEEecC-------h-HHhh--------hChhhEEECCCCC----cccCCCCCccCCCCCHHHHHHH
Confidence 99999999877555544431 1 1111 1234443221111 1322 34568999999999999
Q ss_pred HHHHHHHHhhCCCEEEecCC
Q 006587 203 RSLYQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 203 ~~~~~~~a~WGvDylK~D~~ 222 (639)
-.+++..++.|||=|-+|++
T Consensus 127 i~IA~Eaa~~GFdEIqfDYI 146 (316)
T PF13200_consen 127 IDIAKEAAKLGFDEIQFDYI 146 (316)
T ss_pred HHHHHHHHHcCCCEEEeeee
Confidence 99999999999999999986
No 49
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.22 Score=57.41 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred CCCCCCce---Ee--cCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcc
Q 006587 31 VRASSPPR---GW--NSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMI 105 (639)
Q Consensus 31 ~~a~tPPm---GW--nSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~ 105 (639)
|..+.||+ |+ |-||+ .+|++|+..-.-|.++ +..|+.|-+|--... .--+++
T Consensus 349 G~~~LPplFsiGYHQcRWNY----~DE~DV~~Vd~~FDeh--diP~DviWLDIEhtd-----------------gKrYFT 405 (915)
T KOG1066|consen 349 GTTPLPPLFSIGYHQCRWNY----NDEEDVLTVDQGFDEH--DIPYDVIWLDIEHTD-----------------GKRYFT 405 (915)
T ss_pred CCCCCCchhhcchhhccccc----cchhhhhhhhcCcccc--CCccceEEEeeeecC-----------------CceeEe
Confidence 55566774 43 34442 5677777765455554 334788888865432 224688
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccc-cCccccccccccccccccc-
Q 006587 106 PDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYED-SGRQWRAKDIGLKERACAW- 183 (639)
Q Consensus 106 pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~-~g~~~~~~di~~~~~~c~~- 183 (639)
.|+.+||. =+.+.+.|.+||-|+=.=++|=|... .+-- .|.+ -..++..||....+.. +|
T Consensus 406 WDk~~FP~------P~~Ml~kLa~kgRklV~IvDPHIKkD---~~Y~--------v~ke~~~~gy~VKd~~G~Dye-G~C 467 (915)
T KOG1066|consen 406 WDKHKFPN------PKDMLKKLASKGRKLVTIVDPHIKKD---DGYF--------VHKEAKDKGYYVKDRDGSDYE-GWC 467 (915)
T ss_pred eccccCCC------HHHHHHHHHhcCCceEEEeCcccccC---CCeE--------EhHHhhhCCeEEEecCCCccc-ccc
Confidence 99999997 79999999999999988888866321 1100 0111 0123455555444322 22
Q ss_pred cCCCceeecCCchHHHHHHHHHHH
Q 006587 184 MQHGFMSVNTKLGAGRAFLRSLYQ 207 (639)
Q Consensus 184 ~~~~~~~lD~t~p~~q~y~~~~~~ 207 (639)
.|++-..+|.-+|.+|+|..+.+.
T Consensus 468 WPG~S~yiDf~nP~~r~wW~~~fa 491 (915)
T KOG1066|consen 468 WPGSSSYIDFINPEARKWWKSQFA 491 (915)
T ss_pred cCCCcccccccCHHHHHHHhhhcc
Confidence 244444589999999999987654
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=94.16 E-value=0.49 Score=50.59 Aligned_cols=119 Identities=15% Similarity=0.276 Sum_probs=72.4
Q ss_pred hHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccc--cCCCceeecCCchH
Q 006587 120 FTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAW--MQHGFMSVNTKLGA 197 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~--~~~~~~~lD~t~p~ 197 (639)
|+.+++..|++||++=-|+..+.... ...++... .|.|...+. +...+.. ..++++.+||.+|+
T Consensus 72 L~~~I~eaHkrGlevHAW~~~~~~~~---~~~~~~~~---------~p~~~~~~~--~~~~~~~~~~~~~~~~lnP~~Pe 137 (311)
T PF02638_consen 72 LEFMIEEAHKRGLEVHAWFRVGFNAP---DVSHILKK---------HPEWFAVNH--PGWVRTYEDANGGYYWLNPGHPE 137 (311)
T ss_pred HHHHHHHHHHcCCEEEEEEEeecCCC---chhhhhhc---------CchhheecC--CCceeecccCCCCceEECCCCHH
Confidence 89999999999999988874433211 11112211 123322111 1111111 12456689999999
Q ss_pred HHHHHHHHHHHH-HhhCCCEEEecCC-CCC---CC------------------ChHH--------------HHHHHHHHH
Q 006587 198 GRAFLRSLYQQY-AEWGVDFVKHDCV-FGD---DL------------------DINE--------------ISFVSEVLK 240 (639)
Q Consensus 198 ~q~y~~~~~~~~-a~WGvDylK~D~~-~~~---~~------------------~~~~--------------~~~m~~al~ 240 (639)
||+|+.++++-+ ....||.|-+|.+ +.. .+ .++. ++.++++++
T Consensus 138 Vr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik 217 (311)
T PF02638_consen 138 VRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIK 217 (311)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997777654 5799999999953 210 00 0110 235777778
Q ss_pred hcCCCeEEEcCC
Q 006587 241 ELDRPIVYSLSP 252 (639)
Q Consensus 241 ~~Gr~i~lsls~ 252 (639)
+....+.++++|
T Consensus 218 ~~kP~v~~sisp 229 (311)
T PF02638_consen 218 AIKPWVKFSISP 229 (311)
T ss_pred HhCCCCeEEEEe
Confidence 887788999886
No 51
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=93.23 E-value=0.78 Score=39.70 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCcc--ce------------ecc
Q 006587 555 GGIRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDY--GV------------LQQ 620 (639)
Q Consensus 555 ~~~~VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~--g~------------~~~ 620 (639)
...-+|.+..++++.+|.+||.+++....++ .+|+. ..-+-+++.+..+. |- ..+
T Consensus 9 ~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~---~~~~p--------~~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g 77 (95)
T PF02806_consen 9 NNVIAFERKDKGDDRVLVVFNFSPEAVYEDY---RIGVP--------EAGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNG 77 (95)
T ss_dssp SSEEEEEETTTETTEEEEEEESSSS-EEEEE---EECSS--------SSEEEEETTTTTCEEEEESSCSETSEEEEETTS
T ss_pred CCEEEEEEcCCCCCEEEEEEECCCcccceeE---EeCCC--------CcceeeEEeCCCccEECCcccccCceEEEeeCC
Confidence 4567888875333389999999987444433 33431 12445667666442 10 146
Q ss_pred EEEEEEcCccEEEEEEe
Q 006587 621 TLSTAVGMHGCALFVLN 637 (639)
Q Consensus 621 ~~s~~v~~Hg~~l~~l~ 637 (639)
.++++|||.++.+|+++
T Consensus 78 ~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 78 RITVTLPPYSALVLKLK 94 (95)
T ss_dssp EEEEEESTTEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEc
Confidence 78999999999999986
No 52
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=93.13 E-value=0.95 Score=40.53 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=44.7
Q ss_pred CeeEEEEeCCC-CcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCc--------cc------eecc
Q 006587 556 GIRSWIATGRE-GEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKD--------YG------VLQQ 620 (639)
Q Consensus 556 ~~~VW~~~l~d-G~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~--------~g------~~~~ 620 (639)
...|.++.-.+ +++|||-.|-.+ +++++|+|+-|+. + ..|.++=+=.+.+ .. ..++
T Consensus 15 eyvviARr~~~G~~Wyvg~in~~~-~r~i~l~L~FL~~---g-----~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~ 85 (103)
T PF14509_consen 15 EYVVIARRKRDGDDWYVGGINGED-ARTITLPLSFLDK---G-----KKYTATIYTDGPDADYTNPEAYKIETRKVTSGD 85 (103)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-T---T-------EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-
T ss_pred eEEEEEEEcCCCCCEEEEEeeCCC-ceEEEEECcccCC---C-----CcEEEEEEEeCCcccccCCcceEEEEEEECCCC
Confidence 34566666543 479999999654 4569999999863 2 3566643333321 11 1146
Q ss_pred EEEEEEcCccEEEEEEec
Q 006587 621 TLSTAVGMHGCALFVLNC 638 (639)
Q Consensus 621 ~~s~~v~~Hg~~l~~l~~ 638 (639)
++++.|+|+|-.+++|+|
T Consensus 86 ~l~i~l~~~GG~vi~~~p 103 (103)
T PF14509_consen 86 KLTITLAPGGGFVIRITP 103 (103)
T ss_dssp EEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEeCCCcEEEEEEC
Confidence 888999999999999987
No 53
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=92.75 E-value=0.16 Score=40.30 Aligned_cols=54 Identities=9% Similarity=0.226 Sum_probs=28.7
Q ss_pred EEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccceeccEEEEEEcCccEEEEE
Q 006587 559 SWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFV 635 (639)
Q Consensus 559 VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~Hg~~l~~ 635 (639)
|=.+ ..++..|+-++|.++++++|++ .. ..+||.+++... +. ++|+|+|++|++
T Consensus 4 v~~R-~~~~~~y~F~~N~s~~~~~v~l--~~---------------~~~dll~g~~~~---~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 4 VTVR-ENDGGRYLFLLNFSDEPQTVTL--PE---------------SYTDLLTGETVS---GG--LTLPPYGVRVLK 57 (58)
T ss_dssp EEE-----ETTEEEEEE-SSS-EE------T---------------T-EEEES------------SEE-TTEEEEEE
T ss_pred EEEE-EcCCCEEEEEEECCCCCEEEEc--CC---------------CceecccCccee---eE--EEECCCEEEEEE
Confidence 3344 3455679999999999988876 22 127999997642 22 899999999987
No 54
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.55 E-value=1.5 Score=51.43 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEE
Q 006587 55 FLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKF 134 (639)
Q Consensus 55 v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~ 134 (639)
+.+.++.+...|+++||+.|.|=---+... ..+-| ++..+...|+ .+|-. ...||.|++.+|++|++.
T Consensus 166 y~~~~~~l~~ylk~lG~t~velmPv~e~~~-----~~~wG---Y~~~~~~~~~-~~~g~---~~~~~~lv~~~H~~gi~V 233 (639)
T PRK14706 166 YRELAHRLGEYVTYMGYTHVELLGVMEHPF-----DGSWG---YQVTGYYAPT-SRLGT---PEDFKYLVNHLHGLGIGV 233 (639)
T ss_pred HHHHHHHHHHHHHHcCCCEEEccchhcCCC-----CCCCC---cCcccccccc-cccCC---HHHHHHHHHHHHHCCCEE
Confidence 334444444568899999987621111000 00011 2333445555 35532 247999999999999998
Q ss_pred EEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH-HhhC
Q 006587 135 GIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWG 213 (639)
Q Consensus 135 GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~-a~WG 213 (639)
=|=+.+.-. +.-..+. ..|+. .+.|...|.. ......|.. ..+|..+|+|++|+-+.++.+ .+.+
T Consensus 234 ilD~v~nH~-~~~~~~l--------~~~dg-~~~y~~~~~~-~g~~~~w~~---~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 234 ILDWVPGHF-PTDESGL--------AHFDG-GPLYEYADPR-KGYHYDWNT---YIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred EEEeccccc-Ccchhhh--------hccCC-CcceeccCCc-CCcCCCCCC---cccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 664443211 1000000 00000 0011111110 001122321 247899999999997777776 5899
Q ss_pred CCEEEecCC
Q 006587 214 VDFVKHDCV 222 (639)
Q Consensus 214 vDylK~D~~ 222 (639)
||-+.+|-+
T Consensus 300 iDG~R~Dav 308 (639)
T PRK14706 300 VDGLRVDAV 308 (639)
T ss_pred CCeEEEeee
Confidence 999999964
No 55
>PLN02784 alpha-amylase
Probab=92.49 E-value=1.6 Score=52.35 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=29.8
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~ 223 (639)
-||.++|.||+++...++.+. +.|||-+.+|+.-
T Consensus 642 DLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 642 NIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 488999999999988888775 7999999999973
No 56
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=92.31 E-value=0.67 Score=53.82 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=74.1
Q ss_pred HHHHHHHHHhccccCCceEEEe--------cccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHH
Q 006587 55 FLQSAEIISQRLRPHGYEYVVV--------DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (639)
Q Consensus 55 v~~~ad~~a~gL~~~Gy~yi~I--------DdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ 126 (639)
..+-|+.+-.-|+++||+.|.| |-+|- +|..|..-|. +||-+ ..+||+|+|.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWG----------------Yq~~g~yAp~-sryGt---Pedfk~fVD~ 222 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWG----------------YQGTGYYAPT-SRYGT---PEDFKALVDA 222 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCC----------------CCcceecccc-ccCCC---HHHHHHHHHH
Confidence 3444444444578899999987 44452 2333444454 56722 1289999999
Q ss_pred HHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHH
Q 006587 127 VHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLY 206 (639)
Q Consensus 127 ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~ 206 (639)
+|++|+-.=|=+-|+-.. +...-+....+..+.+ ..|+- ....-.|.. ++-|..+++|+.|+=+-+
T Consensus 223 aH~~GIgViLD~V~~HF~----~d~~~L~~fdg~~~~e------~~~~~-~~~~~~Wg~---~i~~~gr~EVR~Fll~na 288 (628)
T COG0296 223 AHQAGIGVILDWVPNHFP----PDGNYLARFDGTFLYE------HEDPR-RGEHTDWGT---AIFNYGRNEVRNFLLANA 288 (628)
T ss_pred HHHcCCEEEEEecCCcCC----CCcchhhhcCCccccc------cCCcc-cccCCCccc---chhccCcHHHHHHHHHHH
Confidence 999999776655554321 1111111000111111 11111 001112332 233555999999975545
Q ss_pred HH-HHhhCCCEEEecCCC
Q 006587 207 QQ-YAEWGVDFVKHDCVF 223 (639)
Q Consensus 207 ~~-~a~WGvDylK~D~~~ 223 (639)
.. +.+..||-|.+|.+.
T Consensus 289 l~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 289 LYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred HHHHHHhCCcceeeehhh
Confidence 44 578999999999863
No 57
>PLN02960 alpha-amylase
Probab=92.04 E-value=1.9 Score=51.86 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=70.6
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCcc
Q 006587 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (639)
Q Consensus 64 ~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~ 143 (639)
..|+++||+.|.|=---+... ..+-| +|..+...|+ .+|-+ ...||.|++.+|++||++=|=+.+.-
T Consensus 424 dYLk~LGvt~IeLmPv~e~~~-----~~swG---Y~~~~yfa~~-~~yGt---p~dfk~LVd~aH~~GI~VILDvV~NH- 490 (897)
T PLN02960 424 PHVKKAGYNAIQLIGVQEHKD-----YSSVG---YKVTNFFAVS-SRFGT---PDDFKRLVDEAHGLGLLVFLDIVHSY- 490 (897)
T ss_pred HHHHHcCCCEEEECCcccCCC-----CCCCC---CCcccCCCcc-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc-
Confidence 457899999997732111100 00011 1233444455 24432 23799999999999999866554422
Q ss_pred ccccCC--CCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH-HhhCCCEEEec
Q 006587 144 TQAFNA--DTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWGVDFVKHD 220 (639)
Q Consensus 144 ~~a~~~--~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~-a~WGvDylK~D 220 (639)
++.+. +.. .|......|...+- ......|.. ..+|..+|+|+.|+-+.++.+ .+.+||.+.+|
T Consensus 491 -~~~d~~~~L~--------~FDG~~~~Yf~~~~--~g~~~~WG~---~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~D 556 (897)
T PLN02960 491 -AAADEMVGLS--------LFDGSNDCYFHSGK--RGHHKRWGT---RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFH 556 (897)
T ss_pred -cCCccccchh--------hcCCCccceeecCC--CCccCCCCC---cccCCCCHHHHHHHHHHHHHHHHHHCCCceeec
Confidence 11110 010 01100000111110 001112321 236899999999997777776 58999999999
Q ss_pred CC
Q 006587 221 CV 222 (639)
Q Consensus 221 ~~ 222 (639)
.+
T Consensus 557 AV 558 (897)
T PLN02960 557 SL 558 (897)
T ss_pred cc
Confidence 76
No 58
>PLN00196 alpha-amylase; Provisional
Probab=91.90 E-value=2.1 Score=47.86 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=29.0
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~ 222 (639)
=||.++|.+++|+...++.+. +-|||-+.+|..
T Consensus 172 DLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~a 205 (428)
T PLN00196 172 DIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFA 205 (428)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehh
Confidence 389999999999988887775 699999999986
No 59
>PLN02361 alpha-amylase
Probab=91.22 E-value=3.1 Score=46.10 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=29.7
Q ss_pred eecCCchHHHHHHHHHHHHHHh-hCCCEEEecCCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVF 223 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~-WGvDylK~D~~~ 223 (639)
=||.++|.|++++...++.+.+ -|||-+.+|+..
T Consensus 148 DLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk 182 (401)
T PLN02361 148 NIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAK 182 (401)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3899999999999888887764 999999999874
No 60
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=90.45 E-value=1.5 Score=52.22 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=71.9
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCcc
Q 006587 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (639)
Q Consensus 64 ~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~ 143 (639)
..|+++||+.|.|=--++... ..+-|+ +..+...|+ .+|-+ ...||.|++.+|++|+++=|=+.+.-.
T Consensus 258 ~ylk~LG~t~I~LmPi~e~~~-----~~~wGY---~~~~~fa~~-~~~Gt---p~dlk~LVd~aH~~GI~VilDvV~nH~ 325 (758)
T PLN02447 258 PRIKALGYNAVQLMAIQEHAY-----YGSFGY---HVTNFFAVS-SRSGT---PEDLKYLIDKAHSLGLRVLMDVVHSHA 325 (758)
T ss_pred HHHHHcCCCEEEECCccccCC-----CCCCCc---CcccCcccc-cccCC---HHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 447899999998743222110 001111 223344454 35532 236999999999999998665544221
Q ss_pred ccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006587 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (639)
Q Consensus 144 ~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~ 222 (639)
+. +.. .|- ..|+.....|...+. ......|. -..+|..+|+|+.|+-+.++.+. +.+||-+++|.+
T Consensus 326 --~~--~~~-~gl---~~fDg~~~~Yf~~~~--~g~~~~w~---~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 326 --SK--NTL-DGL---NGFDGTDGSYFHSGP--RGYHWLWD---SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred --cc--ccc-ccc---cccCCCCccccccCC--CCCcCcCC---CceecCCCHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 10 000 000 011110011211111 00011121 12578999999999988888775 699999999964
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=89.35 E-value=3.9 Score=38.24 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=71.3
Q ss_pred HHHhccccCCceEEEeccc--ccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEe
Q 006587 61 IISQRLRPHGYEYVVVDYL--WYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 61 ~~a~gL~~~Gy~yi~IDdg--W~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~ 138 (639)
.+.+-|+.+|.+.|+|..+ +--. |+++ +.|..-|.-. + + =|+.+++.+|++|+++=+|+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-----yYPt-------~~~~~hp~L~-~-D-----llge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-----YYPT-------KVGPRHPGLK-R-D-----LLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-----EccC-------CCCcCCCCCC-c-C-----HHHHHHHHHHHCCCEEEEEE
Confidence 3445578888999999654 2211 1111 1244433322 1 1 38999999999999999999
Q ss_pred ecCccccccCCCCcccccccCCcccccCccccccccccccc-cccccCCCceeecCCchHHHHHHHHHHH-HHHhhCCCE
Q 006587 139 MRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKER-ACAWMQHGFMSVNTKLGAGRAFLRSLYQ-QYAEWGVDF 216 (639)
Q Consensus 139 ~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~-~c~~~~~~~~~lD~t~p~~q~y~~~~~~-~~a~WGvDy 216 (639)
+.++..- .|. .+|+|..++.....- .-.....+++.+.+..|- ++|+-..++ .+..+.+|-
T Consensus 65 ~~~~d~~---------------~~~-~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DG 127 (132)
T PF14871_consen 65 DFSWDED---------------AAE-RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPY-REFLLEQIREILDRYDVDG 127 (132)
T ss_pred eeecChH---------------HHH-hCCceeeECCCCCCcCCCCcCCCCceecCCCccH-HHHHHHHHHHHHHcCCCCE
Confidence 8864221 222 257898888765420 001111224445555553 466544444 345688888
Q ss_pred EEec
Q 006587 217 VKHD 220 (639)
Q Consensus 217 lK~D 220 (639)
|=+|
T Consensus 128 iF~D 131 (132)
T PF14871_consen 128 IFFD 131 (132)
T ss_pred EEec
Confidence 7666
No 62
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.11 E-value=3.1 Score=49.49 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=75.0
Q ss_pred HHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEE
Q 006587 56 LQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFG 135 (639)
Q Consensus 56 ~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~G 135 (639)
+..++.+...|+++|++.|.|==-.+... + .+-| .+..|...|+ .+|.+ ...||.|++.+|++|++.=
T Consensus 269 ~~la~~ll~ylk~LGvt~I~LmPi~e~~~--~---~~wG---Y~~~~~~a~~-~~~G~---~~dfk~lV~~~H~~Gi~VI 336 (730)
T PRK12568 269 PTLAEQLIPYVQQLGFTHIELLPITEHPF--G---GSWG---YQPLGLYAPT-ARHGS---PDGFAQFVDACHRAGIGVI 336 (730)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccCCC--C---CCCC---CCCCcCCccC-cccCC---HHHHHHHHHHHHHCCCEEE
Confidence 33444344457889999997632111110 0 0011 2333455566 36653 2479999999999999986
Q ss_pred EEeecCccccccCC-CC-cccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH-Hhh
Q 006587 136 IHVMRGISTQAFNA-DT-PILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEW 212 (639)
Q Consensus 136 Iy~~pg~~~~a~~~-~s-pi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~-a~W 212 (639)
|=+.+.- ++... +. ..-|+ ..|+ ..|.. ......|. . ..+|..+|+|++|+-+.++.+ .+.
T Consensus 337 lD~V~nH--~~~d~~~l~~fdg~---~~Ye-------~~d~~-~g~~~~W~--~-~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 337 LDWVSAH--FPDDAHGLAQFDGA---ALYE-------HADPR-EGMHRDWN--T-LIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred EEecccc--CCccccccccCCCc---cccc-------cCCCc-CCccCCCC--C-eecccCCHHHHHHHHHHHHHHHHHh
Confidence 6554432 11110 00 00011 1111 11100 00011221 1 257999999999987777765 579
Q ss_pred CCCEEEecCC
Q 006587 213 GVDFVKHDCV 222 (639)
Q Consensus 213 GvDylK~D~~ 222 (639)
+||-+.+|.+
T Consensus 401 hIDG~R~DAv 410 (730)
T PRK12568 401 HLDGLRVDAV 410 (730)
T ss_pred CceEEEEcCH
Confidence 9999999964
No 63
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=88.51 E-value=4.6 Score=47.21 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=41.4
Q ss_pred ecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEE
Q 006587 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~l 248 (639)
++..+|++++|+-..++.+. +.|||.+.+|... .++.+-.+.+++++++....+++
T Consensus 289 ~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~--~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 289 TASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMG--IHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--cCCHHHHHHHHHHHHhhCCCeEE
Confidence 57789999999876777775 6999999999752 23444467788888777655444
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=88.29 E-value=2.3 Score=53.22 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred HhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCc
Q 006587 63 SQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGI 142 (639)
Q Consensus 63 a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~ 142 (639)
-..|+++||+.|.|==--+... + .+-| ++..+...|+ .+|-. ..+||.|++.+|++||+.=|=+-|.-
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~--~---~swG---Y~~~~y~ap~-~ryGt---~~dfk~lVd~~H~~GI~VILD~V~nH 839 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPF--G---GSWG---YQVTSYFAPT-SRFGH---PDEFRFLVDSLHQAGIGVLLDWVPAH 839 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCC--C---CCCC---CCccccCCcC-cccCC---HHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3446889999996621111000 0 0001 2333455555 35532 23799999999999999877655532
Q ss_pred cccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH-HhhCCCEEEecC
Q 006587 143 STQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY-AEWGVDFVKHDC 221 (639)
Q Consensus 143 ~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~-a~WGvDylK~D~ 221 (639)
. + ++..-+. .|+. .+.|...|... ...-.|. . ..+|..+|++++|+-+.+..+ .+.+||-+.+|-
T Consensus 840 ~-~---~d~~~l~-----~fdg-~~~y~~~d~~~-g~~~~Wg--~-~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Da 905 (1224)
T PRK14705 840 F-P---KDSWALA-----QFDG-QPLYEHADPAL-GEHPDWG--T-LIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDA 905 (1224)
T ss_pred C-C---cchhhhh-----hcCC-CcccccCCccc-CCCCCCC--C-ceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEee
Confidence 1 0 1110000 0100 00111111110 0011122 1 357999999999987777765 579999999997
Q ss_pred C
Q 006587 222 V 222 (639)
Q Consensus 222 ~ 222 (639)
+
T Consensus 906 v 906 (1224)
T PRK14705 906 V 906 (1224)
T ss_pred h
Confidence 4
No 65
>PRK12313 glycogen branching enzyme; Provisional
Probab=87.91 E-value=7.9 Score=45.52 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=69.9
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEeecCcc
Q 006587 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHVMRGIS 143 (639)
Q Consensus 64 ~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~~pg~~ 143 (639)
..|+++|++.|.|==-++.... .+-| +|..+...+++ +|-. ...||.|++.+|++||++=|=+.+.-
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~-----~~~G---Y~~~~y~~i~~-~~Gt---~~d~k~lv~~~H~~Gi~VilD~V~nH- 244 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLD-----GSWG---YQLTGYFAPTS-RYGT---PEDFMYLVDALHQNGIGVILDWVPGH- 244 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCC-----CCCC---CCCcCcCcCCC-CCCC---HHHHHHHHHHHHHCCCEEEEEECCCC-
Confidence 4478899999976332222110 0011 13334455553 4432 24799999999999999866443321
Q ss_pred ccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006587 144 TQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (639)
Q Consensus 144 ~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~ 222 (639)
++.. ..-+ ..|... +.|...+... .....|.. ..+|..+|++++|+-+.++.+. +.|||-+.+|.+
T Consensus 245 -~~~~--~~~~-----~~~~~~-~~~~~~~~~~-~~~~~w~~---~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 245 -FPKD--DDGL-----AYFDGT-PLYEYQDPRR-AENPDWGA---LNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred -CCCC--cccc-----cccCCC-cceeecCCCC-CcCCCCCC---cccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 1111 0000 001100 0011111000 00001211 2478999999999877788775 689999999954
No 66
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.59 E-value=6.6 Score=46.95 Aligned_cols=141 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred HHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEE
Q 006587 56 LQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFG 135 (639)
Q Consensus 56 ~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~G 135 (639)
...++.+...|+++|++.|.|==-.+.... .+-| +|..+...+++ +|-. ...||.|++.+|++||++=
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~-----~~~G---Y~~~~y~ai~~-~~Gt---~~dfk~lV~~~H~~Gi~Vi 332 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFD-----GSWG---YQPTGYYAPTS-RFGT---PDDFRYFVDACHQAGIGVI 332 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCC-----CCCC---CCcccCCCcCc-ccCC---HHHHHHHHHHHHHCCCEEE
Confidence 333333334578999999977322221100 0001 12333444552 3432 2479999999999999986
Q ss_pred EEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHHH-hhCC
Q 006587 136 IHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQYA-EWGV 214 (639)
Q Consensus 136 Iy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~a-~WGv 214 (639)
|=+.+.- ++.. ...+ ..|... +.|...|... .....|. . ..+|..+|++++|+-+.++.+. +.||
T Consensus 333 lD~V~NH--~~~~-~~~~------~~~~~~-~~y~~~~~~~-~~~~~w~--~-~~~n~~~~~v~~~l~~~~~~W~~e~~i 398 (726)
T PRK05402 333 LDWVPAH--FPKD-AHGL------ARFDGT-ALYEHADPRE-GEHPDWG--T-LIFNYGRNEVRNFLVANALYWLEEFHI 398 (726)
T ss_pred EEECCCC--CCCC-ccch------hccCCC-cceeccCCcC-CccCCCC--C-ccccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 6443321 1110 0000 001100 0011111100 0011121 1 2468999999999987788765 6999
Q ss_pred CEEEecCC
Q 006587 215 DFVKHDCV 222 (639)
Q Consensus 215 DylK~D~~ 222 (639)
|-+.+|.+
T Consensus 399 DG~R~D~v 406 (726)
T PRK05402 399 DGLRVDAV 406 (726)
T ss_pred cEEEECCH
Confidence 99999963
No 67
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=87.53 E-value=8.2 Score=44.58 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCch-
Q 006587 118 KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLG- 196 (639)
Q Consensus 118 ~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p- 196 (639)
..||.|++.+|++||+.=|=+... .++ +....+. .| .+ |...+ ..+.|.+ .+|..+|
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~N--H~~--~~~~~~~-----~~---~~-y~~~~-----~~~~wg~----~~n~~~~~ 217 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYN--HFG--PEGNYLP-----RY---AP-YFTDR-----YSTPWGA----AINFDGPG 217 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccC--CCC--Ccccccc-----cc---Cc-cccCC-----CCCCCCC----ccccCCCc
Confidence 369999999999999985543321 111 1110000 00 11 21111 1122322 3688888
Q ss_pred --HHHHHHHHHHHHHH-hhCCCEEEecCCCC-CCCChHH-HHHHHHHHHhcC
Q 006587 197 --AGRAFLRSLYQQYA-EWGVDFVKHDCVFG-DDLDINE-ISFVSEVLKELD 243 (639)
Q Consensus 197 --~~q~y~~~~~~~~a-~WGvDylK~D~~~~-~~~~~~~-~~~m~~al~~~G 243 (639)
.+++|+-..++.+. +.|||-+.+|.... ......+ .+.+++++++..
T Consensus 218 ~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 218 SDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELA 269 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHC
Confidence 99999866667664 79999999996421 1111122 356777776654
No 68
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=87.49 E-value=2.4 Score=49.37 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=60.9
Q ss_pred CCCCeeEEEEeCCC-CcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCcccee--ccEEEEEEcCc
Q 006587 553 GSGGIRSWIATGRE-GEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVL--QQTLSTAVGMH 629 (639)
Q Consensus 553 ~~~~~~VW~~~l~d-G~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~--~~~~s~~v~~H 629 (639)
...+.-+.+..+++ ++..|++.|++.+++.+++.+..+- + ..++|+..+...+.. .+.+++.|++|
T Consensus 606 ~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~----~-------~~~~dl~~~~~~~~~~~~~~~~i~L~~y 674 (688)
T TIGR02455 606 QAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFA----P-------GPVVDIIHESVEGDLTDDCELMINLDPY 674 (688)
T ss_pred CCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccC----C-------CCceeccCCCccCCcCCCceeEEEecCc
Confidence 34567778888764 4789999999999999999988752 1 378999999986653 46799999999
Q ss_pred cEEEEEEec
Q 006587 630 GCALFVLNC 638 (639)
Q Consensus 630 g~~l~~l~~ 638 (639)
|-.-|+|.+
T Consensus 675 ~~~wl~~~~ 683 (688)
T TIGR02455 675 EALALRIVN 683 (688)
T ss_pred ceEEEEecc
Confidence 999999865
No 69
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=86.85 E-value=5.2 Score=46.28 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=30.2
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~ 222 (639)
-||..+|+|++|+...++.+.+-|||.+.+|..
T Consensus 170 dLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~ 202 (551)
T PRK10933 170 DLNWENPAVRAELKKVCEFWADRGVDGLRLDVV 202 (551)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcch
Confidence 488999999999999999999999999999954
No 70
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=86.40 E-value=7.6 Score=42.85 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCEEEEEeec
Q 006587 120 FTEVAKKVHAMGLKFGIHVMR 140 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~p 140 (639)
++.|++.+|+.|||||+|..+
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~ 150 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSL 150 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCH
Confidence 899999999999999999876
No 71
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=86.27 E-value=4.7 Score=46.55 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=30.1
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~ 222 (639)
-||.++|++++++...++.+.+-|||.+.+|..
T Consensus 163 dln~~np~v~~~i~~~~~~W~~~giDGfRlDa~ 195 (543)
T TIGR02403 163 DLNWENPEVREELKDVVNFWRDKGVDGFRLDVI 195 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 389999999999999999988899999999964
No 72
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=85.40 E-value=3.5 Score=35.02 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=41.3
Q ss_pred EEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccceeccEEEEEEcCccEEEEEE
Q 006587 559 SWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALFVL 636 (639)
Q Consensus 559 VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~Hg~~l~~l 636 (639)
|+.+. .|+..++.++|-.+++ .++++++.-..+.+ .-+.+|+-+|+... .+. +++|||.++.|+.|
T Consensus 13 vYfR~-~~~~tVmVilN~n~~~--~~ldl~ry~E~l~~------~~~~~diltg~~i~-l~~--~l~l~~~~~~ILel 78 (78)
T PF10438_consen 13 VYFRY-YDGKTVMVILNKNDKE--QTLDLKRYAEVLGG------FTSAKDILTGKTID-LSK--NLTLPPKSVLILEL 78 (78)
T ss_dssp EEEEE-ESSEEEEEEEE-SSS---EEEEGGGGHHHHTT--------EEEETTT--EEE--SS--EEEE-TTEEEEEEE
T ss_pred EEEEE-cCCCEEEEEEcCCCCC--eEEcHHHHHHhhCC------CcceEECCCCCEEe-cCC--cEEECCCceEEEEC
Confidence 44444 4567899999988876 56677654322333 46899999999763 333 68999999999875
No 73
>PRK10785 maltodextrin glucosidase; Provisional
Probab=84.44 E-value=16 Score=42.64 Aligned_cols=175 Identities=11% Similarity=0.136 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~k 130 (639)
+-+.|.+..|+ |+++|.+.|-|==-..... . .|+ |..-....|| +|-+ ...|+.|++.+|++
T Consensus 177 Dl~GI~~kLdY----L~~LGv~~I~L~Pif~s~s--~-----hgY---d~~Dy~~iDp-~~Gt---~~df~~Lv~~aH~r 238 (598)
T PRK10785 177 DLDGISEKLPY----LKKLGVTALYLNPIFTAPS--V-----HKY---DTEDYRHVDP-QLGG---DAALLRLRHATQQR 238 (598)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEeCCcccCCC--C-----CCc---CcccccccCc-ccCC---HHHHHHHHHHHHHC
Confidence 44567777776 5778888886643222211 0 122 2112233442 3432 24699999999999
Q ss_pred CCEEEEEeecCccccccCCCCccccccc---CCccccc---CccccccccccccccccccCCCceeecCCchHHHHHHH-
Q 006587 131 GLKFGIHVMRGISTQAFNADTPILDTLK---GGAYEDS---GRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLR- 203 (639)
Q Consensus 131 GlK~GIy~~pg~~~~a~~~~spi~gt~~---~~~y~~~---g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~- 203 (639)
|||+=|=..+ ..|+ ..++++.... .+.|... -.+|..-+-. ....|-+.-....-||..+|++++|+-
T Consensus 239 GikVilD~V~--NH~~--~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~-~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 239 GMRLVLDGVF--NHTG--DSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDD-GRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred CCEEEEEECC--CcCC--CCCHHHHHhhccccccccCCCCCcceeeEECCC-CCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 9998554332 1221 1122111000 0011100 0012110000 001121111122358899999999985
Q ss_pred ---HHHHHHHh--hCCCEEEecCCCC--C-C---CChHHHHHHHHHHHhcCCCeEE
Q 006587 204 ---SLYQQYAE--WGVDFVKHDCVFG--D-D---LDINEISFVSEVLKELDRPIVY 248 (639)
Q Consensus 204 ---~~~~~~a~--WGvDylK~D~~~~--~-~---~~~~~~~~m~~al~~~Gr~i~l 248 (639)
++++.+.+ .|||.+.+|-... . . .+.+-.+.+++++++...++++
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~l 369 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYV 369 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEE
Confidence 36776654 6999999996421 1 0 0122246788888877655443
No 74
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=83.60 E-value=9.7 Score=46.46 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=44.6
Q ss_pred ecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEc
Q 006587 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSL 250 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsl 250 (639)
++..||.+++|+-..++.++ +.|||-+.+|-+. .++.+-+..+++++++...++++--
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~--~~~~~f~~~~~~~l~~i~pdi~l~G 524 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMG--HHPKAQMLAAREAIKALTPEIYFYG 524 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechh--hCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 47789999999866677765 8999999999763 2455667888888888876665543
No 75
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=82.63 E-value=4.2 Score=46.81 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=49.5
Q ss_pred CeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCcccee-ccEEEEEEcCccEEEE
Q 006587 556 GIRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVL-QQTLSTAVGMHGCALF 634 (639)
Q Consensus 556 ~~~VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~-~~~~s~~v~~Hg~~l~ 634 (639)
..-++.+... |+.+|+++|.+++++++++++..+ .| . ...||.+++..-.. .+.++++|+|+++.+|
T Consensus 469 ~v~~f~R~~~-~~~vlVv~N~s~~~~~v~l~~~~~----~~------~-~~~dl~~~~~~~~~~~~~~~~~l~p~~~~~~ 536 (539)
T TIGR02456 469 RVLAFLREYE-GERVLCVFNFSRNPQAVELDLSEF----AG------R-VPVELIGGAPFPPVGGDGYLLTLGPHGFYWF 536 (539)
T ss_pred CEEEEEEEcC-CcEEEEEEeCCCCCEEeecccccc----cc------C-cceecccCCccccccCCcceEEECCceEEEE
Confidence 4566776644 578999999999999888877653 11 1 24788887753222 2358899999999999
Q ss_pred EE
Q 006587 635 VL 636 (639)
Q Consensus 635 ~l 636 (639)
||
T Consensus 537 ~~ 538 (539)
T TIGR02456 537 RL 538 (539)
T ss_pred Ee
Confidence 86
No 76
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=82.58 E-value=9.4 Score=41.44 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCEEEEEeecC
Q 006587 120 FTEVAKKVHAMGLKFGIHVMRG 141 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~pg 141 (639)
++.|++.||+.|||||+|..+.
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHcCCeEEEEecch
Confidence 8999999999999999999885
No 77
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=81.33 E-value=4.7 Score=34.24 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=33.0
Q ss_pred EEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccceeccEEEEEEcCccEEEE
Q 006587 559 SWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALF 634 (639)
Q Consensus 559 VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~Hg~~l~ 634 (639)
+......+|+..+.+||++++++++. .. ...+-||+..... ..+ ..+||||+++++
T Consensus 34 ~~~~r~~~~~~l~v~~Nls~~~~~~~---~~--------------~~~~~l~~s~~~~-~~~--~~~L~p~~~~v~ 89 (89)
T PF11941_consen 34 LAFRRTGGGERLLVAFNLSDEPVTVP---EG--------------PWGEVLFSSEPAR-AGG--AGTLPPWSVVVL 89 (89)
T ss_dssp EEEEEEETTEEEEEEEE-SSS-EEEE---TS--------------CCEEEEEECSCSS-E----EEEE-TTEEEEE
T ss_pred EEEEEEcCCceEEEEEecCCCcEEcc---CC--------------CCCeEEEcCCCcc-ccc--CceECCCEEEEC
Confidence 33444466789999999999887666 11 1123455544332 222 889999999875
No 78
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=80.07 E-value=19 Score=41.56 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.3
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~ 222 (639)
-+|.++|++++|+...++.+.+-|||.+.+|.+
T Consensus 167 dln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 167 DLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 489999999999999999999999999999965
No 79
>PLN02877 alpha-amylase/limit dextrinase
Probab=79.83 E-value=24 Score=43.33 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=40.1
Q ss_pred cCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhc--------CCCeEEEcC
Q 006587 192 NTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKEL--------DRPIVYSLS 251 (639)
Q Consensus 192 D~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~--------Gr~i~lsls 251 (639)
...|+.+++|+-..++.++ +.|||-+.+|-+.. ++.+.+..++.+|++. |+.|++--.
T Consensus 530 Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~--i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGE 596 (970)
T PLN02877 530 ASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGH--LMKRTMVRAKDALQSLTLERDGVDGSSIYLYGE 596 (970)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccc--ccHHHHHHHHHHHHHHhhhhcccCCCceEEEEe
Confidence 5678999999755566665 79999999997632 4455566666666665 466655433
No 80
>PLN02808 alpha-galactosidase
Probab=79.18 E-value=0.72 Score=50.69 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=43.8
Q ss_pred cCCCCCcccccccceeecccc-CCCCCCCCccccccccccceEEeeccCCCCCccceee
Q 006587 405 VTPPHLSEVAESNTHVLGLTS-CKDPKANSWSIQAHDQELEEICWKGKSGNKIGEPLCL 462 (639)
Q Consensus 405 n~~s~~~~~~s~~~~~lgL~~-c~~~~~d~Wt~~~~~~~~~~i~~~~~~~~~~~~~~Cl 462 (639)
|+++. +.+++++++.|||++ ..++++|+|+++.....+++++ .+++.|+++.|=+
T Consensus 328 N~~~~-~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~g~~~~~~~--~~v~pHg~~~~rl 383 (386)
T PLN02808 328 NRGSS-RATITARWSDIGLNSSAVVNARDLWAHSTQSSVKGQLS--ALVESHACKMYVL 383 (386)
T ss_pred ECCCC-CEEEEEEHHHhCCCCCCceEEEECCCCCccCcccceEE--EEECCceEEEEEE
Confidence 77766 788999999999986 5689999999887554456665 7899999988744
No 81
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.72 E-value=1.1 Score=48.73 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=48.3
Q ss_pred cCCCcccccCCCccccccccccceeccCCC-CCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeCCCCcE
Q 006587 491 KGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATGREGEI 569 (639)
Q Consensus 491 ~~~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l~dG~~ 569 (639)
..+..|||+.+... ++ -+-++.|.+ +.||+|.+.-.-+-.+.++++||+|....+ |.+..+-.|...+++.
T Consensus 438 rqg~~Cl~s~~~~~----~~-~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~~p---g~~v~l~~C~~~e~~q 509 (559)
T KOG3738|consen 438 RQGDNCLDSQGQNS----QE-ALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSNTP---GSPVALVPCGNNETKQ 509 (559)
T ss_pred hccchhhhhhhccc----cc-CcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecCCC---CCeEEEEecCCCCCce
Confidence 34789999864322 12 234789988 699999997776777788999999987522 2344444444444333
Q ss_pred EEEE
Q 006587 570 YVAF 573 (639)
Q Consensus 570 ~Val 573 (639)
-...
T Consensus 510 ~~v~ 513 (559)
T KOG3738|consen 510 RWVE 513 (559)
T ss_pred EEEe
Confidence 3333
No 82
>PRK03705 glycogen debranching enzyme; Provisional
Probab=75.90 E-value=20 Score=42.51 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=28.2
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCV 222 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~ 222 (639)
-++..+|.+++|+-..++.+. +.|||-+.+|-.
T Consensus 305 ~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 305 TLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 378899999999877778876 599999999964
No 83
>PLN02692 alpha-galactosidase
Probab=73.17 E-value=1.4 Score=48.87 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=42.3
Q ss_pred cCCCCCcccccccceeecccc-CCCCCCCCccccccc-cccceEEeeccCCCCCccceee
Q 006587 405 VTPPHLSEVAESNTHVLGLTS-CKDPKANSWSIQAHD-QELEEICWKGKSGNKIGEPLCL 462 (639)
Q Consensus 405 n~~s~~~~~~s~~~~~lgL~~-c~~~~~d~Wt~~~~~-~~~~~i~~~~~~~~~~~~~~Cl 462 (639)
|++.. +.+++++++.|||++ +.++++|+|+++... ...+.++ .++|+|+++.|=+
T Consensus 352 N~~~~-~~~i~~~~~~lgl~~~~~~~vrDLW~~~~~g~~~~~~~~--~~v~~Hg~~l~rl 408 (412)
T PLN02692 352 NRGPW-RNSITANWDDIGIPANSIVEARDLWEHKTLKQHFVGNLT--ATVDSHACKMYIL 408 (412)
T ss_pred ECCCC-CEEEEEeHHHhCCCCCCceEEEECCCCCccCccccceEE--EEECCceEEEEEE
Confidence 66665 778999999999986 568999999987643 2346665 6799999887633
No 84
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.05 E-value=3 Score=45.57 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=39.8
Q ss_pred CCcccccCCCccccccccccceeccCCC-CCCCceeeCCCCceeccCcCceeEeccc
Q 006587 493 VGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLV 548 (639)
Q Consensus 493 ~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~ 548 (639)
.+.||+... ..+|.++.+-.|+. +..|+|.. .+|-|.-..|++||++...
T Consensus 482 ~elCL~v~~-----~~pg~~v~l~~C~~~e~~q~~v~-~~~~l~h~~s~KOGd~~~~ 532 (559)
T KOG3738|consen 482 RELCLAVGS-----NTPGSPVALVPCGNNETKQRWVE-LGGHLLHAGSHLCLDNPLK 532 (559)
T ss_pred Hhhhheeec-----CCCCCeEEEEecCCCCCceEEEe-cCCchhcccccceeccccC
Confidence 678999843 23588889999955 78888865 6789999999999999753
No 85
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=70.64 E-value=24 Score=35.87 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCC----eEEEc
Q 006587 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRP----IVYSL 250 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~----i~lsl 250 (639)
.+....+...+-|.||||.-.-.....+.+..+.|++++.++..| |.+|-
T Consensus 147 ~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 147 LIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASG 200 (236)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEES
T ss_pred HHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 456667888999999999997533333456789999999999888 88773
No 86
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=70.16 E-value=40 Score=42.32 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=40.2
Q ss_pred ecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEE
Q 006587 191 VNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVY 248 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~l 248 (639)
++..||.+++|+-..++.+. +.+||.+.+|.+. ..+.+-+..++.++.+....+++
T Consensus 612 l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g--~~d~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 612 LGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMG--DHDAASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccc--cCCHHHHHHHHHHHHHhCcCEEE
Confidence 67899999999866667765 7999999999764 24445556667777666544433
No 87
>PLN02229 alpha-galactosidase
Probab=68.23 E-value=2 Score=47.79 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=43.3
Q ss_pred cCCCCCcccccccceeeccccC-CCCCCCCccccccc-cccceEEeeccCCCCCccceeec
Q 006587 405 VTPPHLSEVAESNTHVLGLTSC-KDPKANSWSIQAHD-QELEEICWKGKSGNKIGEPLCLY 463 (639)
Q Consensus 405 n~~s~~~~~~s~~~~~lgL~~c-~~~~~d~Wt~~~~~-~~~~~i~~~~~~~~~~~~~~Cl~ 463 (639)
|+++. +.+++++++.|||++. .+.++|+|+++... ...++++ .+++.|+++.|=+.
T Consensus 361 N~~~~-~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg~~~~~~~~--~~v~~Hg~~l~rl~ 418 (427)
T PLN02229 361 NRCSE-PATITASWDVIGLESSISVSVRDLWKHKDLSENVVGSFG--AQVDAHDCHMYIFT 418 (427)
T ss_pred eCCCC-CEEEEEEHHHcCCCCCCceEEEECCCCCccCccccceEE--EEECCCeEEEEEEe
Confidence 66665 8889999999999864 57999999987643 2245554 67999999988654
No 88
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=67.41 E-value=92 Score=33.53 Aligned_cols=35 Identities=20% Similarity=-0.011 Sum_probs=31.3
Q ss_pred eeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC
Q 006587 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF 223 (639)
Q Consensus 189 ~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~ 223 (639)
+++|.++|+-++++...++.+.+-|||.|=+|.+.
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lD 170 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLID 170 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHHHcCCCeEeeccch
Confidence 68999999999998777888899999999999874
No 89
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.98 E-value=3.4 Score=44.96 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=54.3
Q ss_pred eeeccCCCccc-c-cccccc----cccc----cceEEEEeccCCCcccccCCCccccccccccceeccCCCCC-CCceee
Q 006587 460 LCLYKSRALLS-S-DGEMIY----KQQY----QGKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRDA-NQMWQL 528 (639)
Q Consensus 460 ~Cl~~~~~~~~-~-~~~~~~----~q~~----~~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~~-~Q~W~~ 528 (639)
+|||.-....+ . ..-.|. ||.+ ++++. .++.||+|+ |.++++.-|+-+. +--|+|
T Consensus 491 ~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl~-----qge~CltAd---------g~~i~~~hC~lgtv~g~WqY 556 (603)
T KOG3737|consen 491 YCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQLM-----QGEQCLTAD---------GSKIMITHCNLGTVKGEWQY 556 (603)
T ss_pred hhHHhcCCCCCCccccccccCCCCceEEEeccccchh-----ccceeeecC---------CceEEEEEeecccccCceeh
Confidence 59876664442 2 455563 6666 34443 378999985 5667889998764 559999
Q ss_pred CCCC-ceeccCcCceeEeccc
Q 006587 529 NPSG-ALISSYSGLCATVNLV 548 (639)
Q Consensus 529 ~~~G-~l~~~~sg~Cl~v~~~ 548 (639)
+.+= .++-..+++|++++.+
T Consensus 557 ~~~tk~~~H~~~~kC~~~se~ 577 (603)
T KOG3737|consen 557 FKNTKRFTHIPSGKCLDRSEV 577 (603)
T ss_pred hhcchheeeccccccccccch
Confidence 9987 7888899999999875
No 90
>PLN03244 alpha-amylase; Provisional
Probab=64.64 E-value=14 Score=44.27 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHcCCEEEEEeecCccccccC-CCCccc-ccccCCcccccCccccccccccccccccccCCCceeecCCc
Q 006587 118 KGFTEVAKKVHAMGLKFGIHVMRGISTQAFN-ADTPIL-DTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKL 195 (639)
Q Consensus 118 ~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~-~~spi~-gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~ 195 (639)
..||.|+|.+|++|++.=|=+-+.-. +.-. .+.... |+. ..|. ..+- ......|.. ..+|..+
T Consensus 441 eDLK~LVD~aH~~GI~VILDvV~NH~-~~d~~~GL~~fDGt~--~~Yf-------~~~~--~g~~~~WGs---~~fnyg~ 505 (872)
T PLN03244 441 DDFKRLVDEAHGLGLLVFLDIVHSYA-AADEMVGLSLFDGSN--DCYF-------HTGK--RGHHKHWGT---RMFKYGD 505 (872)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccC-CCccccchhhcCCCc--ccee-------ccCC--CCccCCCCC---ceecCCC
Confidence 37999999999999988665443211 1000 011111 110 0111 1110 001112211 2578999
Q ss_pred hHHHHHHHHHHHHH-HhhCCCEEEecCC
Q 006587 196 GAGRAFLRSLYQQY-AEWGVDFVKHDCV 222 (639)
Q Consensus 196 p~~q~y~~~~~~~~-a~WGvDylK~D~~ 222 (639)
|+|+.|+-+.++.+ .+.+||.+.+|.+
T Consensus 506 ~EVr~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 506 LDVLHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceeecc
Confidence 99999997777776 5899999999976
No 91
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=61.13 E-value=64 Score=38.44 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.0
Q ss_pred eecCCchHHHHHH-HHHHHHH-HhhCCCEEEecCC
Q 006587 190 SVNTKLGAGRAFL-RSLYQQY-AEWGVDFVKHDCV 222 (639)
Q Consensus 190 ~lD~t~p~~q~y~-~~~~~~~-a~WGvDylK~D~~ 222 (639)
.|+.+||.++.++ |++ +.+ .+..||.+..|=.
T Consensus 328 tln~~hpmvrk~ivDsL-rYWv~e~hVDGFRFDLa 361 (697)
T COG1523 328 TLNTEHPMVRKLIVDSL-RYWVEEYHVDGFRFDLA 361 (697)
T ss_pred ccccCChHHHHHHHHHH-HHHHHHhCCCceeecch
Confidence 3788999999996 665 555 5899999999953
No 92
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=60.65 E-value=35 Score=33.01 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=23.4
Q ss_pred eCCCCcEEEEEEeCCCCCeEEEEecchhhh
Q 006587 563 TGREGEIYVAFFNLNTEKTLISTKISDLAK 592 (639)
Q Consensus 563 ~l~dG~~~ValfN~~~~~~~it~~l~~lG~ 592 (639)
+..+++++|.|.|++.++++++|.++....
T Consensus 100 d~~~~~l~v~vVN~~~~~~~v~l~l~g~~~ 129 (177)
T PF06964_consen 100 DEDGGELYVKVVNRSSEPQTVTLNLQGFSP 129 (177)
T ss_dssp ETTTTEEEEEEEE-SSSBEEEEEEETTSTS
T ss_pred ECCCCEEEEEEEECCCCCEEEEEEEcCCCC
Confidence 334557999999999889999999987653
No 93
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.41 E-value=24 Score=39.30 Aligned_cols=121 Identities=15% Similarity=0.222 Sum_probs=71.7
Q ss_pred hHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHH
Q 006587 120 FTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGR 199 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q 199 (639)
++.+++.-|++||++==|+.++...- +-+++.-.++... ....++|.+.. .-+|. .-.++|+-||+||
T Consensus 117 La~~I~~AHkr~l~v~aWf~~~~~a~---~~s~~~~~~p~~~-~~~~~~~~~~~------~~~~~--~~~~ldPg~Pevq 184 (418)
T COG1649 117 LAFVIAEAHKRGLEVHAWFNPYRMAP---PTSPLTKRHPHWL-TTKRPGWVYVR------HQGWG--KRVWLDPGIPEVQ 184 (418)
T ss_pred HHHHHHHHHhcCCeeeechhhcccCC---CCChhHhhCCCCc-ccCCCCeEEEe------cCCce--eeeEeCCCChHHH
Confidence 78888899999999999998876321 1121111110000 00001111111 00111 2467999999999
Q ss_pred HHHHHHH-HHHHhhCCCEEEecCC--CC--CCC------------------ChH---H---------HHHHHHHHHhcCC
Q 006587 200 AFLRSLY-QQYAEWGVDFVKHDCV--FG--DDL------------------DIN---E---------ISFVSEVLKELDR 244 (639)
Q Consensus 200 ~y~~~~~-~~~a~WGvDylK~D~~--~~--~~~------------------~~~---~---------~~~m~~al~~~Gr 244 (639)
+|+.+++ +....+-||-|-+|.. +. ..+ ++. + +..+..++++.-.
T Consensus 185 ~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp 264 (418)
T COG1649 185 DFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKP 264 (418)
T ss_pred HHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCC
Confidence 9996665 5677899999999953 11 111 112 1 2335666778888
Q ss_pred CeEEEcCC
Q 006587 245 PIVYSLSP 252 (639)
Q Consensus 245 ~i~lsls~ 252 (639)
+++++++|
T Consensus 265 ~v~~svsp 272 (418)
T COG1649 265 NVKFSVSP 272 (418)
T ss_pred CeEEEEcc
Confidence 89999998
No 94
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=59.38 E-value=42 Score=39.98 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=28.8
Q ss_pred eecCCchHHHHHHHHHHHHHH-hhCCCEEEecCCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYA-EWGVDFVKHDCVF 223 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a-~WGvDylK~D~~~ 223 (639)
.+|..+|.+++|+-..++.+. +.|||-+.+|...
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 378999999999876777776 7999999999753
No 95
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=58.36 E-value=61 Score=35.38 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=38.4
Q ss_pred chHHHH-HHHHHHHHHHhhCCCEEEecCCCCCC---CChHHH----HHHHHHHHhcCCCeEEEcC
Q 006587 195 LGAGRA-FLRSLYQQYAEWGVDFVKHDCVFGDD---LDINEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 195 ~p~~q~-y~~~~~~~~a~WGvDylK~D~~~~~~---~~~~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+|+.|+ |++++++.+.+.|+|.|=+|+-+... .+.+.| +.+++++++.++...+++.
T Consensus 93 ~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 93 NPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 344444 78999999999999999999865422 223333 4577777766555555553
No 96
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=58.28 E-value=19 Score=37.03 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=44.2
Q ss_pred eeecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCC-CeEEE
Q 006587 189 MSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDR-PIVYS 249 (639)
Q Consensus 189 ~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr-~i~ls 249 (639)
.-+|..+|++++|+...++.+.+-|||.+.+|... .+..+-.+.+.+++++... .+++.
T Consensus 137 ~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~--~~~~~~~~~~~~~~~~~~~~~~~i~ 196 (316)
T PF00128_consen 137 PDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAK--HIPKEFWKEFRDEVKEEKPDFFLIG 196 (316)
T ss_dssp EEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGG--GSSHHHHHHHHHHHHHHHTTSEEEE
T ss_pred chhhhhhhhhhhhhcccccchhhceEeEEEEcccc--ccchhhHHHHhhhhhhhccccceee
Confidence 46899999999999889999999999999999863 2444556667777765533 34443
No 97
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=57.90 E-value=34 Score=39.69 Aligned_cols=274 Identities=17% Similarity=0.249 Sum_probs=120.8
Q ss_pred CCCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCC
Q 006587 31 VRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDR 110 (639)
Q Consensus 31 ~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~r 110 (639)
.+.+-|=+||=|= |....+.++..+.++.|.+ +-.+.++.= -|+-... .+.+. +.-.++ ..
T Consensus 98 dW~~fPRYGfls~--f~~~~~~~~~~~~i~~L~~----yHIN~~QFY-DW~~rH~--~Pl~~---------~~~~~~-~~ 158 (559)
T PF13199_consen 98 DWTRFPRYGFLSD--FDKSKSAEDIEAEIDQLNR----YHINGLQFY-DWMYRHH--KPLPG---------TNGQPD-QT 158 (559)
T ss_dssp STTSS--EEEE-----GGGGGHHHHHHHHHHHHH----TT--EEEET-S--SBTT--B-S-S---------SS-EEE--T
T ss_pred CcccCCcceEecC--CCCcCCchhHHHHHHHHHh----hCcCeEEEE-eeccccC--CcCCC---------CCCchh-hh
Confidence 3566677777663 4444577788888887654 333344432 2654321 00000 000111 13
Q ss_pred CCCCCCC----CChHHHHHHHHHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCC
Q 006587 111 WPSSRGG----KGFTEVAKKVHAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQH 186 (639)
Q Consensus 111 FP~~~~~----~Gmk~lad~ih~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~ 186 (639)
|++..+. .=+|.+++.+|++|||.=.|.+-.-..-... ..+|... ...|...... ..+.. +..-.|. .
T Consensus 159 w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~-~~gv~~e--W~ly~d~~~~--~~~~~--~l~~~w~-s 230 (559)
T PF13199_consen 159 WTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANNNYE-EDGVSPE--WGLYKDDSHS--NQDTY--DLPDGWP-S 230 (559)
T ss_dssp T-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT---S--SS-G--GBEEESSSBT--SB-EE--EETT-E---
T ss_pred hhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccccCcc-cccCCch--hhhhhccCCC--cccee--ecCcccc-c
Confidence 3321100 1389999999999999999987542211100 1122211 1222221100 00000 0000121 1
Q ss_pred CceeecCCchHHHHHH-HHHHHHHHhhCCCEEEecCCCCC---------CC-C-hHHHHHHHHHHHhc--CCCeEEEcCC
Q 006587 187 GFMSVNTKLGAGRAFL-RSLYQQYAEWGVDFVKHDCVFGD---------DL-D-INEISFVSEVLKEL--DRPIVYSLSP 252 (639)
Q Consensus 187 ~~~~lD~t~p~~q~y~-~~~~~~~a~WGvDylK~D~~~~~---------~~-~-~~~~~~m~~al~~~--Gr~i~lsls~ 252 (639)
..|..|+.+|+=|.|+ ++..+.+...|||.+-+|-++.. .. + ++.|..+-+++++. +.++++.-..
T Consensus 231 ~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~ 310 (559)
T PF13199_consen 231 DLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVS 310 (559)
T ss_dssp EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GG
T ss_pred ceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccC
Confidence 2578999999999997 55556788999999999976421 12 1 23455555555443 3567766332
Q ss_pred CCCCChhhhh---hhccccceEEecCCCcCchHhHHHHHHhhhhhhhhhhhcccCCCCCcccCCCCCCCcccCCCCCCCC
Q 006587 253 GTGVTPAMAK---EVSGLVNMYRITGDDWDTWGDVAAHFNVSRDFSAANMIGAKGLQGKSWPDLDMLPLGWLTDPGSNEG 329 (639)
Q Consensus 253 g~~~~~~~a~---~~~~~an~wRis~Di~d~W~~i~~~~~~~~~w~~~~~~~~~g~~~g~wnD~DmL~vG~~~~~~~~~g 329 (639)
+... ...+. .-.-|.-+| |..+...++++.++..+.++..+ | . -.++....
T Consensus 311 ~~g~-~~~a~~~~~d~lY~EvW----~~~~~Y~~Lk~~i~~~r~~~~~~-----g---k-----~~V~AAYm-------- 364 (559)
T PF13199_consen 311 GYGI-EQIAKTSKVDFLYNEVW----DDYDTYGDLKRIIDQNRKYTSSG-----G---K-----STVVAAYM-------- 364 (559)
T ss_dssp GTTH-HHHTT-S--SSEEEE------SBS-BHHHHHHHHHHHHHHH--------S----------EEEE-----------
T ss_pred ccch-hhhhcccccceeeeecc----cccccHHHHHHHHHHHhhhhccc-----c---c-----hhhhHHHh--------
Confidence 1110 00000 001366778 34567888999888888873100 0 0 01110100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCceecCC
Q 006587 330 PHRTCNLNLDEQRTQMTLWAMAKSPLMFGGD 360 (639)
Q Consensus 330 ~~~~~~lT~~E~rt~~tlWa~~~sPLiig~D 360 (639)
+..-|+.-.-+-.++.|+-++.|-||++
T Consensus 365 ---n~fn~~~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 365 ---NYFNTPSVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp -------HHHHHHHHHHHHHTT-EEE-ETTS
T ss_pred ---hhccchhhHHHHHHHHHCCCceeeecCC
Confidence 0123556666777888888899999983
No 98
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=56.02 E-value=28 Score=39.44 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=40.8
Q ss_pred eecCCchHHHHHHHHHHHHHHh-hCCCEEEecCCCCCCCChHHHHHHHHHHHhcC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDCVFGDDLDINEISFVSEVLKELD 243 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~-WGvDylK~D~~~~~~~~~~~~~~m~~al~~~G 243 (639)
=||..+|+|++++...++.+.+ .|||.+.+|... .++++-...+.+++++..
T Consensus 202 DLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk--~v~~~f~~~~~~~~~~~~ 254 (479)
T PRK09441 202 DIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK--HIDAWFIKEWIEHVREVA 254 (479)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc--CCCHHHHHHHHHHHHHhc
Confidence 4889999999999888888876 999999999763 344555667777776554
No 99
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=55.32 E-value=13 Score=37.06 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCcccc
Q 006587 119 GFTEVAKKVHAMGLKFGIHVMRGISTQ 145 (639)
Q Consensus 119 Gmk~lad~ih~kGlK~GIy~~pg~~~~ 145 (639)
....++++||++|||+|+=+.||++-.
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~Ve 126 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTPVE 126 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCcHH
Confidence 578999999999999999999988643
No 100
>PRK06852 aldolase; Validated
Probab=55.23 E-value=71 Score=34.23 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcC-CCeEEEc
Q 006587 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELD-RPIVYSL 250 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~G-r~i~lsl 250 (639)
++...++.=++.|-|+||..++.... ....+.++++++.+| .|++++-
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~--~g~~e~f~~vv~~~g~vpVviaG 237 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEG--ANPAELFKEAVLAAGRTKVVCAG 237 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCC--CCCHHHHHHHHHhCCCCcEEEeC
Confidence 55666677889999999999874111 012356777888884 5777663
No 101
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=53.34 E-value=12 Score=36.97 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=44.9
Q ss_pred cccccCCHHHHHHHHHHHHhccccCCceE-EEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHH
Q 006587 45 SFCWTISEEEFLQSAEIISQRLRPHGYEY-VVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEV 123 (639)
Q Consensus 45 ~~~~~ite~~v~~~ad~~a~gL~~~Gy~y-i~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~l 123 (639)
+|.+..+.+.-.++|+.+.+.++..+-.+ +.||--..... ... .++...-. -++.+
T Consensus 62 Hf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~----------------~~~--~~~~~~~~-----~~~~f 118 (191)
T cd06414 62 FYSYAVTVAEAREEAEFVLRLIKGYKLSYPVYYDLEDETQL----------------GAG--LSKDQRTD-----IANAF 118 (191)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhccCCCCCeEEEeecCCCC----------------CCC--CCHHHHHH-----HHHHH
Confidence 34444566778888997766666655443 46773222110 000 01111111 47999
Q ss_pred HHHHHHcCCEEEEEeecCc
Q 006587 124 AKKVHAMGLKFGIHVMRGI 142 (639)
Q Consensus 124 ad~ih~kGlK~GIy~~pg~ 142 (639)
.+.|+++|.|++||+.+..
T Consensus 119 ~~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 119 CETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHHcCCCeEEEecHHH
Confidence 9999999999999997743
No 102
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=9 Score=44.31 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=40.4
Q ss_pred cCCCcccccCCCccccccccccceeccCCC-CCCCceeeCCCCceeccCcCceeEec
Q 006587 491 KGVGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVN 546 (639)
Q Consensus 491 ~~~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~~~~~G~l~~~~sg~Cl~v~ 546 (639)
...+.|||...... +++..+.+++|++ +.||.|+|..+|.|+-.. +|+++.
T Consensus 461 ~~~~~cld~~~~~~---~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~~~--~cl~~~ 512 (578)
T KOG3736|consen 461 GNPNLCLDTERAPA---GQGMAVGLYPCHGPGGNQYFPYTKQGEIRIGD--LCLDVD 512 (578)
T ss_pred CCcchhhhhhchhc---cCCCcceEecCCCccccccccccCCcceEECC--EEeccc
Confidence 34678999843111 1367899999988 789999999999999887 999985
No 103
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.93 E-value=51 Score=36.32 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=53.1
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecc---cccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChH
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDY---LWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFT 121 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDd---gW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk 121 (639)
..+|+++|.+.++.++ +..+++||+-|.|=. ||--..--....+. -.|+||--.-+..||+ .
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~----RtDeyGGslenR~rf~--------~ 205 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNK----RTDKYGGSLENRLRFA--------I 205 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCC----CCCcCCCCHHHHhHHH--------H
Confidence 4589999999998553 467789999999976 66311000000000 1478887666667887 6
Q ss_pred HHHHHHHHc---CCEEEEEeec
Q 006587 122 EVAKKVHAM---GLKFGIHVMR 140 (639)
Q Consensus 122 ~lad~ih~k---GlK~GIy~~p 140 (639)
.+++.|++. .+.+|+=+.+
T Consensus 206 eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 206 EIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHHHHHHhcCCCceEEEEEec
Confidence 788888774 5677776654
No 104
>smart00632 Aamy_C Aamy_C domain.
Probab=52.81 E-value=1e+02 Score=25.90 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=35.9
Q ss_pred eeEEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccC----CCcccee-ccEEEEEEcCcc-
Q 006587 557 IRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWS----AKDYGVL-QQTLSTAVGMHG- 630 (639)
Q Consensus 557 ~~VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~----~~~~g~~-~~~~s~~v~~Hg- 630 (639)
.-+|.+ |+..+.++|.+....++++. -++ + ...| .|+-+ ++..-.. .+.+++.||+++
T Consensus 10 ~laF~R----g~~g~VaiN~~~~~~~~~~~---t~l--p-----~G~Y--~d~l~g~~~g~~v~V~~~G~~~~~l~~~~~ 73 (81)
T smart00632 10 QIAFER----GSKGFVAINRSDSDLTITLQ---TSL--P-----AGTY--CDVISGLCTGKSVTVGSNGIATFTLPAGGA 73 (81)
T ss_pred EEEEEC----CCeEEEEEECCCCceEEEEe---ecC--C-----Ccce--EEEecCcccCCEEEECCCCEEEEEECCCCe
Confidence 456665 46666777998876666653 122 1 1233 25554 4433222 367889999999
Q ss_pred EEEE
Q 006587 631 CALF 634 (639)
Q Consensus 631 ~~l~ 634 (639)
.+|+
T Consensus 74 v~i~ 77 (81)
T smart00632 74 VAIH 77 (81)
T ss_pred EEEE
Confidence 5544
No 105
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=51.20 E-value=25 Score=35.88 Aligned_cols=142 Identities=16% Similarity=0.264 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC-CCCCCCCCCCChHHHHHHH
Q 006587 49 TISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DRWPSSRGGKGFTEVAKKV 127 (639)
Q Consensus 49 ~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~-~rFP~~~~~~Gmk~lad~i 127 (639)
.++++.+.......-+.|.+.||+.|.+=+ .| ++..+..+. --||+ +=+.+++..+
T Consensus 66 ~ls~~~v~~~lq~~i~~le~~G~d~illlC-------TG------------~F~~l~~~~~lleP~----ril~~lV~al 122 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQLEAQGYDVILLLC-------TG------------EFPGLTARNPLLEPD----RILPPLVAAL 122 (221)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCEEEEec-------cC------------CCCCCCCCcceeehH----HhHHHHHHHh
Confidence 378888888777555568889999998842 11 122222221 23454 2477888888
Q ss_pred HHcCCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHH
Q 006587 128 HAMGLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQ 207 (639)
Q Consensus 128 h~kGlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~ 207 (639)
... .+.||-+ |-....+. .. ..|.. .. .+..+....|-++. .+-+..-++
T Consensus 123 ~~~-~~vGViv-P~~eQ~~~-----~~------------~kW~~--l~--------~~~~~a~asPy~~~-~~~l~~Aa~ 172 (221)
T PF07302_consen 123 VGG-HQVGVIV-PLPEQIAQ-----QA------------EKWQP--LG--------NPVVVAAASPYEGD-EEELAAAAR 172 (221)
T ss_pred cCC-CeEEEEe-cCHHHHHH-----HH------------HHHHh--cC--------CCeEEEEeCCCCCC-HHHHHHHHH
Confidence 775 8999964 32111000 00 00110 00 00011111111111 233455578
Q ss_pred HHHhhCCCEEEecCCCCCCCChHHHHHHHHHHH-hcCCCeEEEc
Q 006587 208 QYAEWGVDFVKHDCVFGDDLDINEISFVSEVLK-ELDRPIVYSL 250 (639)
Q Consensus 208 ~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~-~~Gr~i~lsl 250 (639)
.++++|.|+|=+||++ |+ +.|++.++ .+|.|++++-
T Consensus 173 ~L~~~gadlIvLDCmG---Yt----~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 173 ELAEQGADLIVLDCMG---YT----QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHhcCCCEEEEECCC---CC----HHHHHHHHHHhCCCEEeHH
Confidence 8999999999999983 22 45677665 4899999874
No 106
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=51.10 E-value=16 Score=35.99 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=43.4
Q ss_pred ccccCCHHHHHHHHHHHHhccccCCce---EEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHH
Q 006587 46 FCWTISEEEFLQSAEIISQRLRPHGYE---YVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (639)
Q Consensus 46 ~~~~ite~~v~~~ad~~a~gL~~~Gy~---yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~ 122 (639)
|.+-.+.++..++|+.+.+.++..|+. .+.|| ++... + ...... -+++
T Consensus 63 f~~~~~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD--~E~~~-----------------~-----~~~~~~-----~~~~ 113 (192)
T cd06522 63 YAHYTSAADAQAEARYFANTAKSLGLSKNTVMVAD--MEDSS-----------------S-----SGNATA-----NVNA 113 (192)
T ss_pred EEecCChHHHHHHHHHHHHHHHHcCCCCCCceEEE--eecCC-----------------C-----cchHHH-----HHHH
Confidence 444457788888898776666655543 35677 33210 0 011111 4799
Q ss_pred HHHHHHHcCC-EEEEEeecC
Q 006587 123 VAKKVHAMGL-KFGIHVMRG 141 (639)
Q Consensus 123 lad~ih~kGl-K~GIy~~pg 141 (639)
+.+.|++.|. +++||+.+-
T Consensus 114 F~~~v~~~g~~~~~iY~~~~ 133 (192)
T cd06522 114 FWQTMKAAGYKNTDVYTSAS 133 (192)
T ss_pred HHHHHHHcCCCCcEEEccHH
Confidence 9999999998 899998763
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=50.19 E-value=99 Score=39.45 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=37.3
Q ss_pred ecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH-HHHHHHHHhcCCC
Q 006587 191 VNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI-SFVSEVLKELDRP 245 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~-~~m~~al~~~Gr~ 245 (639)
+|..||.+++|+...++.+.+.|||-+.+|-...-.-.+.++ ..++..+++...+
T Consensus 313 ~n~~~p~v~~~i~d~lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d 368 (1221)
T PRK14510 313 PNLERPFILRLPMDVLRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQD 368 (1221)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCC
Confidence 577899999999888898888999999999643100012222 4555666655443
No 108
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.07 E-value=2e+02 Score=30.56 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=47.2
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEeccc--ccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHH
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYL--WYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdg--W~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~ 122 (639)
..+|+++|.+..+.++ +.++++||+-|.|-.+ +-...--....+ .-.|+||--.-+..||. ..
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n----~R~d~yGgs~enr~r~~--------~e 196 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTN----KRTDEYGGSLENRARFL--------LE 196 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCcccc----CCCcccCCCHHHHHHHH--------HH
Confidence 4689999999998653 5678899999999764 210000000000 01366765444444544 67
Q ss_pred HHHHHHHc---CCEEEEEeec
Q 006587 123 VAKKVHAM---GLKFGIHVMR 140 (639)
Q Consensus 123 lad~ih~k---GlK~GIy~~p 140 (639)
+++.|++. .+.+|+=+.+
T Consensus 197 ii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 197 IVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHHHcCCCceEEEEech
Confidence 77777764 5566665543
No 109
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=49.79 E-value=65 Score=34.15 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=35.2
Q ss_pred ccccCCceEEEecccccccccCCccccCCCcccccCCCCcccC---CCCCCCCCCCCChHHHHHHHHHcCCEEEEEe
Q 006587 65 RLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPD---PDRWPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 65 gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd---~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~ 138 (639)
.+.++|.+.|.|+|-|.... -+.|. .--.|. +|.+++.||+.|.+.++|+
T Consensus 176 ~~~~~G~d~i~i~d~~~~~~------------------~isp~~f~e~~~p~------~k~i~~~i~~~g~~~~lH~ 228 (330)
T cd03465 176 ALIEAGADGIYISDPWASSS------------------ILSPEDFKEFSLPY------LKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHhCCCEEEEeCCccccC------------------CCCHHHHHHHhhHH------HHHHHHHHHHcCCceEEEE
Confidence 35677999999999886431 00110 011364 8999999999999999987
No 110
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=49.27 E-value=43 Score=39.65 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=26.8
Q ss_pred ecCCchHHHHHHHHHHHH-HHhhCCCEEEecCC
Q 006587 191 VNTKLGAGRAFLRSLYQQ-YAEWGVDFVKHDCV 222 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~-~a~WGvDylK~D~~ 222 (639)
++..||.|+.|+-+.++. +.+..||-+..|.+
T Consensus 372 fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ 404 (757)
T KOG0470|consen 372 FNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLV 404 (757)
T ss_pred ccCCCHHHHHHHHHHHHHHHHheeccceEEcch
Confidence 577899999998666666 46899999999974
No 111
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=47.78 E-value=38 Score=32.84 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=43.7
Q ss_pred cccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHH
Q 006587 47 CWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (639)
Q Consensus 47 ~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ 126 (639)
..+.+++++.+-.+.| ++.|.++++| .|..-.. ...+++ .+ . +.+|.- ....=+..+.+.
T Consensus 14 ~~~~~~~~W~~~~~~m----~~~GidtlIl--q~~~~~~-~~~yps--------~~---~-~~~~~~-~~~d~l~~~L~~ 73 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM----KAIGIDTLIL--QWTGYGG-FAFYPS--------KL---S-PGGFYM-PPVDLLEMILDA 73 (166)
T ss_pred hcCCCHHHHHHHHHHH----HHcCCcEEEE--EEeecCC-cccCCc--------cc---c-CccccC-CcccHHHHHHHH
Confidence 4578999999988775 6788889887 3544311 110110 00 0 112221 000137888888
Q ss_pred HHHcCCEE--EEEeec
Q 006587 127 VHAMGLKF--GIHVMR 140 (639)
Q Consensus 127 ih~kGlK~--GIy~~p 140 (639)
..+.|||+ |||.++
T Consensus 74 A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 74 ADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHcCCEEEEeCCCCc
Confidence 89999986 777765
No 112
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.37 E-value=1.2e+02 Score=31.54 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=40.4
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCC--CCCC----hHHHHHHHHHHHhcC-CCeEEEcC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFG--DDLD----INEISFVSEVLKELD-RPIVYSLS 251 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~--~~~~----~~~~~~m~~al~~~G-r~i~lsls 251 (639)
++|.|||=+++-=+...+.=.+-|+.||.+-=-.. .+.+ .+.++...+.+.+.+ +.|++..-
T Consensus 70 vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttG 138 (249)
T PF02571_consen 70 VIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTG 138 (249)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCc
Confidence 47999998877666666667789999999872111 1111 234555556665555 77888753
No 113
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=47.19 E-value=14 Score=36.41 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeecC
Q 006587 119 GFTEVAKKVHAMGLKFGIHVMRG 141 (639)
Q Consensus 119 Gmk~lad~ih~kGlK~GIy~~pg 141 (639)
-++.+++.+++.|.++|||+.+.
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcc
Confidence 47899999999999999999774
No 114
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=46.77 E-value=25 Score=37.69 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.5
Q ss_pred hHHHHHHHHHcCCEEEEEeecC
Q 006587 120 FTEVAKKVHAMGLKFGIHVMRG 141 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~pg 141 (639)
.+.|++.++..+++||||..++
T Consensus 152 V~EL~~A~rk~dirfGLY~Slf 173 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLF 173 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHH
Confidence 7999999999999999999775
No 115
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=46.75 E-value=69 Score=34.33 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=35.0
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC-CC--CCCCCCCCChHHHHHHHHHcCCEEEEEe
Q 006587 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DR--WPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 64 ~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~-~r--FP~~~~~~Gmk~lad~ih~kGlK~GIy~ 138 (639)
+.+.++|-+.|+++|.|.... .+.|.- .+ .|. ++.+.+.||+.|-.++||+
T Consensus 187 ~~~~~~Gad~I~i~dp~a~~~------------------~lsp~~f~e~~~p~------~k~i~~~i~~~g~~~ilH~ 240 (340)
T TIGR01463 187 KAMVEAGADVIAIADPFASSD------------------LISPETYKEFGLPY------QKRLFAYIKEIGGITVLHI 240 (340)
T ss_pred HHHHHcCCCEEEecCCccCcc------------------ccCHHHHHHHHHHH------HHHHHHHHHhcCCceEEEE
Confidence 346788999999999885321 111110 11 254 8999999999998888886
No 116
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=46.68 E-value=54 Score=35.50 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdgW--------~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+.++.++ ..++++||+-|.|=.+= ....+. -.|+||--.-|..||+
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~----------RtD~yGGslenR~Rf~---- 195 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNK----------RTDEYGGSPENRYRFL---- 195 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCC----------cCCCCCCCHHHHHHHH----
Confidence 4699999999999653 46788999999986552 111100 1377775555666777
Q ss_pred CCChHHHHHHHHHc-CCEEEEEe
Q 006587 117 GKGFTEVAKKVHAM-GLKFGIHV 138 (639)
Q Consensus 117 ~~Gmk~lad~ih~k-GlK~GIy~ 138 (639)
..+++.|++. .+.+||=+
T Consensus 196 ----~eii~~ir~~~~~~v~vRi 214 (337)
T PRK13523 196 ----REIIDAVKEVWDGPLFVRI 214 (337)
T ss_pred ----HHHHHHHHHhcCCCeEEEe
Confidence 6778888775 44555543
No 117
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=46.37 E-value=42 Score=35.97 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.| +++ +++.+|-+++|++.+|...
T Consensus 32 ~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~N 88 (309)
T PF00016_consen 32 LAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAAN 88 (309)
T ss_dssp HHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEE
T ss_pred hhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecc
Confidence 44556677788999999995 44455554 333 5688888899998666654
No 118
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=45.58 E-value=44 Score=34.55 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHcCCEEE
Q 006587 119 GFTEVAKKVHAMGLKFG 135 (639)
Q Consensus 119 Gmk~lad~ih~kGlK~G 135 (639)
-++.|.+|++++|+.|-
T Consensus 57 ~~~~L~~~~~~~gi~f~ 73 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFF 73 (241)
T ss_dssp HHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 58999999999999983
No 119
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=45.41 E-value=68 Score=36.74 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccceeccEEEEEEcCccEEEE
Q 006587 556 GIRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGMHGCALF 634 (639)
Q Consensus 556 ~~~VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~Hg~~l~ 634 (639)
..++=+=..+||+++|.|+|.++++++++|.+.+-. .+ ...+.++||||+.+-+
T Consensus 440 ~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~-----------------------~~--~~~~~~~lp~~s~~t~ 493 (496)
T PF02055_consen 440 GLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGS-----------------------KG--NNHFNVTLPPRSIVTT 493 (496)
T ss_dssp TEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEECTT-----------------------TE--E--EEEEEE-TTEEEE
T ss_pred ceeEEEEECCCCCEEEEEEcCCCCccceEEEEecCC-----------------------cc--eeEEEEEeCCCceEEE
Confidence 344444456899999999999999888777776521 11 1357888999987654
No 120
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=45.30 E-value=40 Score=37.58 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~----~~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.| ++ .++++++-+++|+..+|..+
T Consensus 162 ~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~N 218 (412)
T TIGR03326 162 HAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLAN 218 (412)
T ss_pred HHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEE
Confidence 45566778888999999995 44455554 33 35677888899998777755
No 121
>PRK13840 sucrose phosphorylase; Provisional
Probab=44.31 E-value=25 Score=40.14 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=41.9
Q ss_pred ecCCchHHHHHHHHHHHHHHhhCCCEEEecCCC---CC----CCC-hHH---HHHHHHHHHhcCCCeE
Q 006587 191 VNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVF---GD----DLD-INE---ISFVSEVLKELDRPIV 247 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~---~~----~~~-~~~---~~~m~~al~~~Gr~i~ 247 (639)
||..+|+|++++...++.+.+-|||.+.+|-+. .. ... ++. ++.|++.++..+..++
T Consensus 164 LN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll 231 (495)
T PRK13840 164 IDVHSAAGWEYLMSILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVL 231 (495)
T ss_pred eCCCCHHHHHHHHHHHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEE
Confidence 889999999999999999999999999999642 11 111 222 3567777777654443
No 122
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=44.13 E-value=3.6e+02 Score=27.35 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCC
Q 006587 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~g~~ 255 (639)
++.|++-|.|+|=+-.=. ......+-+.+++.|-..-+.++|..+
T Consensus 74 i~~~~~~gad~i~~H~Ea-----~~~~~~~l~~ik~~g~k~GlalnP~Tp 118 (220)
T PRK08883 74 IPDFAKAGASMITFHVEA-----SEHVDRTLQLIKEHGCQAGVVLNPATP 118 (220)
T ss_pred HHHHHHhCCCEEEEcccC-----cccHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 467788888887655310 112344555566677666777777543
No 123
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=44.06 E-value=91 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=35.3
Q ss_pred hccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCC-CC--CCCCCCCCChHHHHHHHHHcCCEEEEEe
Q 006587 64 QRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDP-DR--WPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 64 ~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~-~r--FP~~~~~~Gmk~lad~ih~kGlK~GIy~ 138 (639)
+.+.++|.++|+|||-|..... -.+.|+. .+ .|. +|.+++++|..|.+.++|+
T Consensus 151 ~~~~eaG~d~i~i~dp~~~~~~----------------~~is~~~~~e~~~p~------~k~i~~~i~~~~~~~~lH~ 206 (306)
T cd00465 151 KTLIEAGAKALQIHEPAFSQIN----------------SFLGPKMFKKFALPA------YKKVAEYKAAGEVPIVHHS 206 (306)
T ss_pred HHHHHhCCCEEEEecccccccC----------------CCCCHHHHHHHHHHH------HHHHHHHHhhcCCceEEEE
Confidence 3467889999999998875410 0011110 12 254 8999999999898888876
No 124
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=42.97 E-value=42 Score=37.39 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcCC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~----~~~m~~al~~~Gr~i~lsls~ 252 (639)
+..++..++.=||||||=|- +...++.+ ++ .++++++-+++|+..+|..+.
T Consensus 161 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 218 (406)
T cd08207 161 TAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNI 218 (406)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 44456677778999999994 44455554 23 367888888999988877653
No 125
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=42.66 E-value=42 Score=37.36 Aligned_cols=51 Identities=29% Similarity=0.424 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls~ 252 (639)
+..++..++.=|+||||=|- +...++.| +++ +++++|-+++|+..+|..+.
T Consensus 157 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~Ni 214 (407)
T TIGR03332 157 LKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNL 214 (407)
T ss_pred HHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecC
Confidence 34455677778999999995 44444544 333 56888888999988887653
No 126
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.81 E-value=1e+02 Score=33.53 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=49.2
Q ss_pred cccCCHHHHHHHHHHHH---hccccCCceEEEeccc--------ccccccCCccccCCCcccccCCCCcccCCCCCCCCC
Q 006587 47 CWTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYL--------WYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (639)
Q Consensus 47 ~~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdg--------W~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~ 115 (639)
-..+|+++|.+..+.++ ..++++||+-|.|=.+ .....+. -.|+||--.-|..||+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~----------R~D~yGGslenR~r~~--- 197 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNR----------RTDEWGGSLENRMRFP--- 197 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCC----------CCcccCCcHHHHHHHH---
Confidence 35699999999998553 4678899999988653 2221111 1477875555667777
Q ss_pred CCCChHHHHHHHHHc-------CCEEEEEee
Q 006587 116 GGKGFTEVAKKVHAM-------GLKFGIHVM 139 (639)
Q Consensus 116 ~~~Gmk~lad~ih~k-------GlK~GIy~~ 139 (639)
..+++.|++. .+.+|+-+.
T Consensus 198 -----~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 198 -----LAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred -----HHHHHHHHHHhccccCCCceEEEEEC
Confidence 6777777763 455666543
No 127
>PRK08227 autoinducer 2 aldolase; Validated
Probab=41.16 E-value=1.7e+02 Score=30.77 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEc
Q 006587 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSL 250 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsl 250 (639)
++..-++.=++.|-|+||..++ . +.|+++++.+..|+++.-
T Consensus 159 ~ia~aaRiaaELGADiVK~~y~--------~-~~f~~vv~a~~vPVviaG 199 (264)
T PRK08227 159 YFSLATRIAAEMGAQIIKTYYV--------E-EGFERITAGCPVPIVIAG 199 (264)
T ss_pred HHHHHHHHHHHHcCCEEecCCC--------H-HHHHHHHHcCCCcEEEeC
Confidence 5666677788999999999985 2 578888888888988663
No 128
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=41.11 E-value=45 Score=36.64 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcCC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~----~~~m~~al~~~Gr~i~lsls~ 252 (639)
+..++..++.=|+||||=|- +...++.| ++ .+++.+|-+++|+..+|+.+.
T Consensus 145 ~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 202 (366)
T cd08148 145 TAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNV 202 (366)
T ss_pred HHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEc
Confidence 45556778888999999994 44455554 33 357888888999988887653
No 129
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=40.28 E-value=30 Score=35.95 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCC-----CC--CChHHHHHHHHHHHhcCCCeEEEcCC
Q 006587 198 GRAFLRSLYQQYAEWGVDFVKHDCVFG-----DD--LDINEISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 198 ~q~y~~~~~~~~a~WGvDylK~D~~~~-----~~--~~~~~~~~m~~al~~~Gr~i~lsls~ 252 (639)
-++|..++.+++.+||||-|-+|--.+ +. +-|...+++++-.+..|..+++.+.|
T Consensus 119 E~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk~f~itMAP 180 (332)
T COG3469 119 EQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKNFFITMAP 180 (332)
T ss_pred HHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCCceEEEecC
Confidence 378999999999999999999995221 11 22344566777777889999999886
No 130
>PRK06769 hypothetical protein; Validated
Probab=40.27 E-value=45 Score=32.18 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHcCCEEEEEee
Q 006587 119 GFTEVAKKVHAMGLKFGIHVM 139 (639)
Q Consensus 119 Gmk~lad~ih~kGlK~GIy~~ 139 (639)
|++.+.+++|++|.+++|=+.
T Consensus 32 gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 32 FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred CHHHHHHHHHHCCCEEEEEEC
Confidence 799999999999999999764
No 131
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=40.20 E-value=47 Score=36.81 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.| +++ ++++++-+++|+..+|..+
T Consensus 142 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~N 198 (391)
T cd08209 142 LAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVN 198 (391)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 45556677888999999994 44455554 333 5677777889998777765
No 132
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=39.62 E-value=3.8e+02 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.9
Q ss_pred hHHHHHHHHHcCCEEEEEe
Q 006587 120 FTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~ 138 (639)
++.-.+..++.||++|+|.
T Consensus 44 ~~~n~~~A~~aGl~vG~Yh 62 (192)
T cd06522 44 AASQIANAKAAGLKVSAYH 62 (192)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 6777788999999999997
No 133
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=39.49 E-value=82 Score=34.13 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHcCCEE
Q 006587 118 KGFTEVAKKVHAMGLKF 134 (639)
Q Consensus 118 ~Gmk~lad~ih~kGlK~ 134 (639)
.+++.|.+|++++|+.|
T Consensus 76 e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 76 EDHRELKEYCESKGIEF 92 (329)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 48999999999999988
No 134
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=39.01 E-value=33 Score=38.93 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=30.2
Q ss_pred ecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006587 191 VNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 191 lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~ 222 (639)
||..+|.+++++..+++.+.+-|||.+.+|-+
T Consensus 160 LN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 160 LDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 78999999999999999999999999999965
No 135
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=38.56 E-value=53 Score=36.65 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.| +++ +++.+|-+++|+..+|..+
T Consensus 149 ~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 205 (412)
T cd08213 149 HAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLAN 205 (412)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 44556778888999999994 44455554 333 5678888899998888765
No 136
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=38.34 E-value=59 Score=36.33 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcCC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~----~~~m~~al~~~Gr~i~lsls~ 252 (639)
+..++..++.=|+||||=|- +...++.+ ++ .+++++|-+++|+..+|..+.
T Consensus 150 ~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 207 (414)
T cd08206 150 YARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNI 207 (414)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEecc
Confidence 34455667777999999995 44455554 33 356778888999988888653
No 137
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=37.13 E-value=2.4e+02 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006587 201 FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls 251 (639)
++..-.+.=++.|.|+||.++-.. .+.++++++.++-|++.+--
T Consensus 167 ~v~~aaRlaaelGADIiK~~ytg~-------~e~F~~vv~~~~vpVviaGG 210 (265)
T COG1830 167 LVGYAARLAAELGADIIKTKYTGD-------PESFRRVVAACGVPVVIAGG 210 (265)
T ss_pred HHHHHHHHHHHhcCCeEeecCCCC-------hHHHHHHHHhCCCCEEEeCC
Confidence 334444666899999999998532 26789999999999987743
No 138
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=36.93 E-value=3.1e+02 Score=28.36 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHH-hcCCCeEEEcCC
Q 006587 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLK-ELDRPIVYSLSP 252 (639)
Q Consensus 198 ~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~-~~Gr~i~lsls~ 252 (639)
.+.|++++.+.+.++|||.|=+|+-++ .+.+.|..+-+.|+ +.++..++++.|
T Consensus 97 r~~f~~s~~~~~~~~~~DGiDiDwE~p--~~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 97 FERYYGQLRDMIRRRGLDGLDLDVEEP--MSLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred HHHHHHHHHHHHHHhCCCceEEeeecC--CCHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 456888888889999999999998653 22345555444443 446667777654
No 139
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=36.77 E-value=4.6e+02 Score=28.32 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=48.2
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--cccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHH
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTE 122 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdgW--~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~ 122 (639)
..+|+++|.+.++.++ ..++++||+-|.|-.+= --..--....+. -.|+||-=.-|..||+ ..
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~----R~D~yGGslenR~rf~--------~e 207 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNK----RTDEYGGSIENRARFL--------LE 207 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCC----CCCcCCCcHHHhhhHH--------HH
Confidence 4689999999998653 46788999999996443 211000000000 1477876566667887 77
Q ss_pred HHHHHHHc-CC-EEEEE
Q 006587 123 VAKKVHAM-GL-KFGIH 137 (639)
Q Consensus 123 lad~ih~k-Gl-K~GIy 137 (639)
+++.|++. |- .+|+=
T Consensus 208 ii~air~~vg~d~v~vR 224 (338)
T cd02933 208 VVDAVAEAIGADRVGIR 224 (338)
T ss_pred HHHHHHHHhCCCceEEE
Confidence 88888864 44 34443
No 140
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=36.58 E-value=67 Score=35.82 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls~ 252 (639)
+..++..++.=|+||||=|- +...++.+ +++ +++++|-+++|+..+|..+.
T Consensus 152 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~Ni 209 (407)
T PRK09549 152 LKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNL 209 (407)
T ss_pred HHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEec
Confidence 44455667777999999994 44455554 333 56888888999988887653
No 141
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=21 Score=39.09 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=40.7
Q ss_pred CCcccccCCCccccccccccceeccCCC-CCCCceeeCCCCceeccCcCceeEecccccccCCCCeeEEEEeC
Q 006587 493 VGVCLDASPKWKLTSKELRRGSFSKCKR-DANQMWQLNPSGALISSYSGLCATVNLVKADVGSGGIRSWIATG 564 (639)
Q Consensus 493 ~~~CLda~~~~~~t~~~~~~~~~~~C~~-~~~Q~W~~~~~G~l~~~~sg~Cl~v~~~~~~~~~~~~~VW~~~l 564 (639)
.+.|||.-++++ +-..-.-+|.+ +.||..+||.-|.|-. --.|+|.. +...++=.|.+
T Consensus 489 t~~ClDsMG~~p-----~g~mglt~CHg~GgNQL~RlN~agQl~q--ge~CltAd-------g~~i~~~hC~l 547 (603)
T KOG3737|consen 489 TAYCLDSMGKTP-----GGFMGLTPCHGMGGNQLFRLNEAGQLMQ--GEQCLTAD-------GSKIMITHCNL 547 (603)
T ss_pred cchhHHhcCCCC-----CCccccccccCCCCceEEEeccccchhc--cceeeecC-------CceEEEEEeec
Confidence 468999865544 44566789977 8999999999998843 34788854 34444555544
No 142
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=36.43 E-value=63 Score=36.51 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~----~~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.| ++ .+++++|-+++|+..+|..+
T Consensus 163 ~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~N 219 (450)
T cd08212 163 YGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLN 219 (450)
T ss_pred HHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeecc
Confidence 45566778888999999994 44445544 23 36788888899998777755
No 143
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=36.28 E-value=75 Score=34.88 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 201 FLRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
-+..++..++.=|||+||-|- +...++.+ +++ ++++++-+++|+...|..+
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~N 199 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPN 199 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEe
Confidence 355566778888999999996 44444443 334 4566666778886666544
No 144
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=35.73 E-value=85 Score=34.40 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCC
Q 006587 207 QQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 207 ~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~ 252 (639)
+.|++|||+.|.+|+- ++.+++..|.+- |-.|.|..|.
T Consensus 83 ~~~~~lGi~~lRlD~G----f~~~~ia~ls~n----g~~I~LNASt 120 (357)
T PF05913_consen 83 SFFKELGIDGLRLDYG----FSGEEIAKLSKN----GIKIELNAST 120 (357)
T ss_dssp HHHHHHT-SEEEESSS-----SCHHHHHHTTT-----SEEEEETTT
T ss_pred HHHHHcCCCEEEECCC----CCHHHHHHHHhC----CCEEEEECCC
Confidence 6799999999999974 345666666653 6778888774
No 145
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.60 E-value=1.3e+02 Score=32.30 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=48.7
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdgW--------~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+.++.++ +..+.+||+-|.|=.+= ....+. -.|+||-=.-|..||+
T Consensus 137 ~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~----------R~D~yGGslenR~rf~---- 202 (338)
T cd04733 137 RAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNK----------RTDEYGGSLENRARLL---- 202 (338)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCC----------CCccCCCCHHHHHHHH----
Confidence 4699999999998653 56788999999886542 222111 1377775555667787
Q ss_pred CCChHHHHHHHHHc-C--CEEEEEe
Q 006587 117 GKGFTEVAKKVHAM-G--LKFGIHV 138 (639)
Q Consensus 117 ~~Gmk~lad~ih~k-G--lK~GIy~ 138 (639)
..+++.|++. | +.+++=+
T Consensus 203 ----~EiI~aIR~avG~d~~v~vri 223 (338)
T cd04733 203 ----LEIYDAIRAAVGPGFPVGIKL 223 (338)
T ss_pred ----HHHHHHHHHHcCCCCeEEEEE
Confidence 6777777753 4 5566544
No 146
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=35.51 E-value=65 Score=35.13 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEe-cccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVV-DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVH 128 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~I-DdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih 128 (639)
.+++.+.+.++.| +++|+++|-| .-.|....+. -|.+ .|. -|..+.+.++
T Consensus 7 ~~~e~~~~d~~~m----~~~G~n~vri~~~~W~~lEP~--------------eG~y-----dF~------~lD~~l~~a~ 57 (374)
T PF02449_consen 7 WPEEEWEEDLRLM----KEAGFNTVRIGEFSWSWLEPE--------------EGQY-----DFS------WLDRVLDLAA 57 (374)
T ss_dssp S-CCHHHHHHHHH----HHHT-SEEEE-CCEHHHH-SB--------------TTB--------H------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHcCCCEEEEEEechhhccCC--------------CCee-----ecH------HHHHHHHHHH
Confidence 4567788877775 6789999997 6678654221 1322 355 4999999999
Q ss_pred HcCCEEEEEee
Q 006587 129 AMGLKFGIHVM 139 (639)
Q Consensus 129 ~kGlK~GIy~~ 139 (639)
+.|+|+-|-+.
T Consensus 58 ~~Gi~viL~~~ 68 (374)
T PF02449_consen 58 KHGIKVILGTP 68 (374)
T ss_dssp CTT-EEEEEEC
T ss_pred hccCeEEEEec
Confidence 99999877664
No 147
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=35.16 E-value=1.6e+02 Score=32.32 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=50.0
Q ss_pred ccCCHHHHHHHHHHH---HhccccCCceEEEecccc--------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEII---SQRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~---a~gL~~~Gy~yi~IDdgW--------~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+.++.+ |+..+++||+-|.|-.+= ....+. -.|+||-=..|..||+
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~----------RtDeYGGslENR~Rf~---- 212 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQ----------RTDQYGGSVENRARLV---- 212 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCC----------CCCcCCCcHHHHHHHH----
Confidence 469999999999855 356788999999885432 111111 1388988778888998
Q ss_pred CCChHHHHHHHHHc-CC-EEEEEee
Q 006587 117 GKGFTEVAKKVHAM-GL-KFGIHVM 139 (639)
Q Consensus 117 ~~Gmk~lad~ih~k-Gl-K~GIy~~ 139 (639)
..+++.|++. |= .+|+=+.
T Consensus 213 ----~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 213 ----LEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred ----HHHHHHHHHHcCCCeEEEEEC
Confidence 6788888773 21 2555443
No 148
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=34.99 E-value=55 Score=34.52 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=24.4
Q ss_pred eecCCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCC
Q 006587 190 SVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDD 226 (639)
Q Consensus 190 ~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~ 226 (639)
-+|+..|+ +.++.+|+||+|||-+--+..++
T Consensus 138 PlDp~EPe------NTAeAIasWgl~YiVlTSVDRDD 168 (360)
T KOG2672|consen 138 PLDPNEPE------NTAEAIASWGLDYIVLTSVDRDD 168 (360)
T ss_pred CCCCCCcc------cHHHHHHHcCCCeEEEEeccccc
Confidence 37888885 56788999999999987665443
No 149
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=34.49 E-value=62 Score=36.25 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.+ +++ ++++++-+++|+..+|..+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~N 234 (424)
T cd08208 178 FAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLAN 234 (424)
T ss_pred HHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEE
Confidence 44556677788999999994 54555554 333 5788888899998777755
No 150
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=34.40 E-value=77 Score=36.01 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HH----HHHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NE----ISFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~----~~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=|+||||=|- +...++.| ++ .+++++|-+++|+..+|+.+
T Consensus 178 ~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~N 234 (468)
T PRK04208 178 YGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLN 234 (468)
T ss_pred HHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEe
Confidence 44556667777999999995 44444544 23 35788888899998777755
No 151
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=33.64 E-value=5.2e+02 Score=26.19 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCC
Q 006587 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGT 254 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~g~ 254 (639)
++.+++.|+|+|=+-.-. ..+.....-+++++.|..+-+.+.+..
T Consensus 81 i~~~~~~Gad~itvH~ea----~~~~~~~~l~~ik~~G~~~gval~p~t 125 (228)
T PTZ00170 81 VDDFAKAGASQFTFHIEA----TEDDPKAVARKIREAGMKVGVAIKPKT 125 (228)
T ss_pred HHHHHHcCCCEEEEeccC----CchHHHHHHHHHHHCCCeEEEEECCCC
Confidence 467889999999775421 112245566667778877777777643
No 152
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.61 E-value=1.6e+02 Score=31.59 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=48.2
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEeccc--c------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYL--W------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdg--W------~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+..+.++ +.++++||+-|.|-.+ + ....+. -.|+||--.-+.-||+
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~----------R~D~yGgsl~nr~rf~---- 207 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNK----------RTDEYGGSLENRMRFL---- 207 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCC----------CCcccCCCHHHHhHHH----
Confidence 4699999999998653 4678899999998753 2 111100 1467777666656666
Q ss_pred CCChHHHHHHHHHc---CCEEEEEe
Q 006587 117 GKGFTEVAKKVHAM---GLKFGIHV 138 (639)
Q Consensus 117 ~~Gmk~lad~ih~k---GlK~GIy~ 138 (639)
..+++.|++. ++.+||=+
T Consensus 208 ----~eiv~aIR~~vG~d~~v~vri 228 (336)
T cd02932 208 ----LEVVDAVRAVWPEDKPLFVRI 228 (336)
T ss_pred ----HHHHHHHHHHcCCCceEEEEE
Confidence 6777888764 45555543
No 153
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=33.16 E-value=1.1e+02 Score=33.90 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCEEEec-CCCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 205 LYQQYAEWGVDFVKHD-CVFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 205 ~~~~~a~WGvDylK~D-~~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
++-....=||||||=| .+...++.+ +++ +++.++-+++|....|.+.
T Consensus 176 ~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~N 229 (429)
T COG1850 176 LAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVN 229 (429)
T ss_pred HHHHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCceEEEEee
Confidence 3344556799999999 566666664 344 3455555678976666554
No 154
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=32.70 E-value=93 Score=31.82 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.3
Q ss_pred hHHHHHHHHHcCCEEEEEeec
Q 006587 120 FTEVAKKVHAMGLKFGIHVMR 140 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~p 140 (639)
|+.+++.+|++|+++-+|..|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~ 207 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTP 207 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccC
Confidence 788899999999999999754
No 155
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.61 E-value=3.1e+02 Score=28.03 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcCCCeEEEcC
Q 006587 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 199 q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+.|++++++.+.+.|+|.|=+|+-+.... .+.| +.+++++++.|. .++++
T Consensus 85 ~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~--~lt~a 138 (253)
T cd06545 85 KALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGK--LLTAA 138 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCc--EEEEE
Confidence 45789999999999999999998543221 3333 456677766554 44443
No 156
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.45 E-value=1.5e+02 Score=32.25 Aligned_cols=73 Identities=30% Similarity=0.417 Sum_probs=45.8
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEeccc--c------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYL--W------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdg--W------~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+..+.++ +.++++||+.|.|=.+ | ....+. -.|+||--.-+..||+
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~----------RtD~yGGslenR~r~~---- 190 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNK----------RTDEWGGSFENRMRFP---- 190 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCC----------CcCccCCCHHHHhHHH----
Confidence 4699999999999653 4678899999999331 1 111000 1477776555556666
Q ss_pred CCChHHHHHHHHHc-C--CEEEEEe
Q 006587 117 GKGFTEVAKKVHAM-G--LKFGIHV 138 (639)
Q Consensus 117 ~~Gmk~lad~ih~k-G--lK~GIy~ 138 (639)
..+++.|++. | +.+||=+
T Consensus 191 ----~eiv~aIR~~vG~d~~v~iRi 211 (353)
T cd02930 191 ----VEIVRAVRAAVGEDFIIIYRL 211 (353)
T ss_pred ----HHHHHHHHHHcCCCceEEEEe
Confidence 5677777763 3 3444443
No 157
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=32.42 E-value=1.6e+02 Score=32.09 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=17.9
Q ss_pred hHHHHHHHHHcCCEEEEEe
Q 006587 120 FTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~ 138 (639)
..+||+.++++|+|+||++
T Consensus 66 vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 66 VIWLAEALQARGVRVGVVS 84 (336)
T ss_pred HHHHHHHHHhcCCeeEEEe
Confidence 7899999999999999986
No 158
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=32.04 E-value=21 Score=34.67 Aligned_cols=65 Identities=12% Similarity=-0.053 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhccccC-CceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006587 52 EEEFLQSAEIISQRLRPH-GYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (639)
Q Consensus 52 e~~v~~~ad~~a~gL~~~-Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~k 130 (639)
+....++|+.+.+.+++. +-..+.||--.... .+ .+..... .++++++.|+++
T Consensus 63 ~~~a~~qa~~fi~~~~~~~~~~~~~lDvE~~~~-----------------~~----~~~~~~~-----~~~~f~~~~~~~ 116 (186)
T cd00599 63 CANAEAQADNFVNTVPRDPGSLPLVLDVEDTGG-----------------GC----SAAALAA-----WLNAFLNEVEAL 116 (186)
T ss_pred CCCHHHHHHHHHHHccCcCCCCCeEEEEecCCC-----------------CC----CHHHHHH-----HHHHHHHHHHHH
Confidence 456788888776666664 33455666322111 00 1111122 589999999999
Q ss_pred C-CEEEEEeecCc
Q 006587 131 G-LKFGIHVMRGI 142 (639)
Q Consensus 131 G-lK~GIy~~pg~ 142 (639)
| .++|||..+..
T Consensus 117 gg~~~~iY~~~~~ 129 (186)
T cd00599 117 TGKKPIIYTSPSF 129 (186)
T ss_pred HCCceEEEEcHHH
Confidence 8 99999998754
No 159
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=31.98 E-value=40 Score=33.35 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhccccCCc---eEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGY---EYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKK 126 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy---~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ 126 (639)
-+.++..++|+++.+.++.+|+ .++.+|--... +. +.+.-.. -++.+.++
T Consensus 64 ~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~-------------------~~---~~~~~~~-----~~~~f~~~ 116 (196)
T cd06415 64 GSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGS-------------------GN---SKAANTS-----AILAFMDT 116 (196)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCC-------------------CC---CHHHHHH-----HHHHHHHH
Confidence 3566788889877655555433 25677733211 00 0000111 47899999
Q ss_pred HHHcCCEEEEEeec
Q 006587 127 VHAMGLKFGIHVMR 140 (639)
Q Consensus 127 ih~kGlK~GIy~~p 140 (639)
|++.|.++|||+.+
T Consensus 117 v~~~G~~~~iYt~~ 130 (196)
T cd06415 117 IKDAGYKPMLYSYK 130 (196)
T ss_pred HHHhCCCcEEEecH
Confidence 99999999999866
No 160
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=31.91 E-value=2e+02 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.9
Q ss_pred CceeecCCchHHHHHHHHHHHHHHhhCCCEEEecCC
Q 006587 187 GFMSVNTKLGAGRAFLRSLYQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 187 ~~~~lD~t~p~~q~y~~~~~~~~a~WGvDylK~D~~ 222 (639)
+--++|+-+|.+=+|=-.+++..++.|||=|..|++
T Consensus 183 ~ehWVd~y~~~~WeYNvtIAKEa~~fGfdEiQFDYI 218 (400)
T COG1306 183 GEHWVDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYI 218 (400)
T ss_pred ceeeecccchhhhhhhHHHHHHHHHcCccceeeeEE
Confidence 334689989988888788899999999999999986
No 161
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=31.68 E-value=58 Score=31.54 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=42.6
Q ss_pred ccccccCCHHHHHHHHHHHHhccc-c-CCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChH
Q 006587 44 DSFCWTISEEEFLQSAEIISQRLR-P-HGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFT 121 (639)
Q Consensus 44 ~~~~~~ite~~v~~~ad~~a~gL~-~-~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk 121 (639)
|+|....++++..++|+.+.+.++ . .+.-.+.||--+..... ... ..... -++
T Consensus 55 Yhf~~~~~~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~----------------~~~----~~~~~-----~~~ 109 (181)
T PF01183_consen 55 YHFARATNSSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNN----------------PSK----SDNTA-----WVK 109 (181)
T ss_dssp EEE--TTTHCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCC----------------SSH----HHHHH-----HHH
T ss_pred EEEeccCCcccHHHHHHHHHHHhcccCCCcceEEEeccccccCC----------------CCH----HHHHH-----HHH
Confidence 344444578899999998876663 2 23334678855441100 000 00011 489
Q ss_pred HHHHHHHH-cCCEEEEEeecC
Q 006587 122 EVAKKVHA-MGLKFGIHVMRG 141 (639)
Q Consensus 122 ~lad~ih~-kGlK~GIy~~pg 141 (639)
++.++|++ .|.++|||..+-
T Consensus 110 ~f~~~~~~~~G~~~~iY~~~~ 130 (181)
T PF01183_consen 110 AFLDEVEKAAGYKPGIYTSKS 130 (181)
T ss_dssp HHHHHHHHHCTSEEEEEEEHH
T ss_pred HHHHHHHHHhCCceeEeecHH
Confidence 99999955 999999998763
No 162
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=31.05 E-value=87 Score=35.66 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls 251 (639)
+..++..++.=||||||=|- +...++.| +++ +++++|-+++|+..+|.++
T Consensus 185 ~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~N 241 (475)
T CHL00040 185 YGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN 241 (475)
T ss_pred HHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeec
Confidence 44456667788999999994 44555554 333 5688888889997666654
No 163
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=30.84 E-value=5.9e+02 Score=25.93 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~k 130 (639)
+...+.+.++. |.+.|.+++.|| .|| |.++|| -.|. ..+++.|++.
T Consensus 14 d~~~l~~~i~~----l~~~g~d~lHiD-------------------imD--G~FVPN-~tfg--------~~~i~~lr~~ 59 (223)
T PRK08745 14 DFARLGEEVDN----VLKAGADWVHFD-------------------VMD--NHYVPN-LTIG--------PMVCQALRKH 59 (223)
T ss_pred CHHHHHHHHHH----HHHcCCCEEEEe-------------------ccc--CccCCC-cccC--------HHHHHHHHhh
Q ss_pred --CCEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHH
Q 006587 131 --GLKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQ 208 (639)
Q Consensus 131 --GlK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~ 208 (639)
.+.+=+|+|- ++|. ..++.
T Consensus 60 ~~~~~~dvHLMv-----------------------------------------------------~~P~------~~i~~ 80 (223)
T PRK08745 60 GITAPIDVHLMV-----------------------------------------------------EPVD------RIVPD 80 (223)
T ss_pred CCCCCEEEEecc-----------------------------------------------------CCHH------HHHHH
Q ss_pred HHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCC
Q 006587 209 YAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (639)
Q Consensus 209 ~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~g~~ 255 (639)
|++-|.|+|=+-. .......++-+.|++.|-..-+.++|..+
T Consensus 81 ~~~~gad~I~~H~-----Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~ 122 (223)
T PRK08745 81 FADAGATTISFHP-----EASRHVHRTIQLIKSHGCQAGLVLNPATP 122 (223)
T ss_pred HHHhCCCEEEEcc-----cCcccHHHHHHHHHHCCCceeEEeCCCCC
No 164
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=30.78 E-value=72 Score=29.16 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~k 130 (639)
|-+........+++.+++.|.+-|+.|-| | -+|-+ -+++|+|-+++.
T Consensus 64 n~~aA~~vG~~la~ra~~~gi~~vvfDrg----------------------g------~~YhG-----rv~A~a~~aRe~ 110 (114)
T TIGR00060 64 NKDAAKKVGKLVAERLKEKGIKDVVFDRG----------------------G------YKYHG-----RVAALAEAAREA 110 (114)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCC----------------------C------CcchH-----HHHHHHHHHHHh
Confidence 33445555566788889999999999832 1 12332 499999999999
Q ss_pred CCEE
Q 006587 131 GLKF 134 (639)
Q Consensus 131 GlK~ 134 (639)
||+|
T Consensus 111 Gl~F 114 (114)
T TIGR00060 111 GLNF 114 (114)
T ss_pred CCCC
Confidence 9987
No 165
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.47 E-value=1.8e+02 Score=30.41 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHcCCEEE
Q 006587 118 KGFTEVAKKVHAMGLKFG 135 (639)
Q Consensus 118 ~Gmk~lad~ih~kGlK~G 135 (639)
.|++.|.+++++.|+.+-
T Consensus 78 ~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 78 EGLKILKEVGDKYNLPVV 95 (266)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 489999999999999873
No 166
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=30.40 E-value=75 Score=30.88 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=43.2
Q ss_pred ccccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHH
Q 006587 44 DSFCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEV 123 (639)
Q Consensus 44 ~~~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~l 123 (639)
|+|.+..+.++..++|+.+-+.++. .-.++.||- +... + ..... .++++
T Consensus 58 Yhf~~~~~~~~a~~eA~~f~~~~~~-~~~~~~lD~--E~~~-----------------~------~~~~~-----~~~~f 106 (177)
T cd06523 58 YAFARGTSTADAKAEARDFYNRANK-KPTFYVLDV--EVTS-----------------M------SDMNA-----GVQAF 106 (177)
T ss_pred EEEeccCCHHHHHHHHHHHHHHhcC-CCceEEEee--ccCC-----------------c------chHHH-----HHHHH
Confidence 3455556777888999977655554 335677883 2110 0 01122 68999
Q ss_pred HHHHHHcCC-EEEEEeec
Q 006587 124 AKKVHAMGL-KFGIHVMR 140 (639)
Q Consensus 124 ad~ih~kGl-K~GIy~~p 140 (639)
.+.|++.|. ++|||+..
T Consensus 107 ~~~v~~~g~~~~~lYt~~ 124 (177)
T cd06523 107 ISELRRLGAKKVGLYIGH 124 (177)
T ss_pred HHHHHHccCCcEEEEchH
Confidence 999999987 67999865
No 167
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=29.90 E-value=2.5e+02 Score=30.40 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=45.3
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecc--ccc-----cc-ccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDY--LWY-----RR-KVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDd--gW~-----~~-~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+..+.++ ...+++||+-|.|=. ||- .+ .+. -.|+||--.-+..||+
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~----------RtD~yGGslenR~r~~---- 194 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNR----------RTDEYGGSLENRMRFL---- 194 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCC----------CCCcCCCCHHHHhHHH----
Confidence 4699999999998553 456789999998877 662 11 110 1377876555656776
Q ss_pred CCChHHHHHHHHHc
Q 006587 117 GKGFTEVAKKVHAM 130 (639)
Q Consensus 117 ~~Gmk~lad~ih~k 130 (639)
..+++.|++.
T Consensus 195 ----~eiv~~ir~~ 204 (343)
T cd04734 195 ----LEVLAAVRAA 204 (343)
T ss_pred ----HHHHHHHHHH
Confidence 6788888875
No 168
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=29.87 E-value=5.4e+02 Score=25.22 Aligned_cols=19 Identities=16% Similarity=-0.087 Sum_probs=17.2
Q ss_pred hHHHHHHHHHcCCEEEEEe
Q 006587 120 FTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~ 138 (639)
+..-.+..++.||++|+|.
T Consensus 40 ~~~n~~~A~~aGl~vG~Yh 58 (196)
T cd06415 40 ASAQVSSAIANGKMTGGYH 58 (196)
T ss_pred HHHHHHHHHHCCCeeEEEE
Confidence 7788889999999999997
No 169
>PRK12313 glycogen branching enzyme; Provisional
Probab=29.51 E-value=1.8e+02 Score=34.26 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=41.9
Q ss_pred CeeEEEEeC-CCCcEEEEEEeCCCCCe-EEEEecchhhh---cC-------CCC--CCCCCeeeEEeccCCCccceeccE
Q 006587 556 GIRSWIATG-REGEIYVAFFNLNTEKT-LISTKISDLAK---AL-------PGK--NLNGASCKCREVWSAKDYGVLQQT 621 (639)
Q Consensus 556 ~~~VW~~~l-~dG~~~ValfN~~~~~~-~it~~l~~lG~---~l-------~~~--~~~~~~~~vrDlW~~~~~g~~~~~ 621 (639)
..-++.+.. .+++.+|.++|.++.+. .+.|.+..-|. -+ .|. .......+....|.++ ...
T Consensus 538 ~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~-----~~~ 612 (633)
T PRK12313 538 SVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGR-----PQS 612 (633)
T ss_pred CEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCchhcCCCCcCCCCceeecccccCCC-----CCE
Confidence 456777765 24567889999987654 34444332110 00 000 0000011112223222 236
Q ss_pred EEEEEcCccEEEEEEec
Q 006587 622 LSTAVGMHGCALFVLNC 638 (639)
Q Consensus 622 ~s~~v~~Hg~~l~~l~~ 638 (639)
+.+.|||.+++||+.+|
T Consensus 613 ~~i~ip~~s~~v~~~~~ 629 (633)
T PRK12313 613 LTLTLPPLGALVLKPKR 629 (633)
T ss_pred EEEEeCCCEEEEEEEcc
Confidence 78999999999999876
No 170
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=28.99 E-value=1.3e+02 Score=31.90 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=35.7
Q ss_pred hHHH-HHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcCCCeEEEc
Q 006587 196 GAGR-AFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSL 250 (639)
Q Consensus 196 p~~q-~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~----~~m~~al~~~Gr~i~lsl 250 (639)
|..+ .|++++++.+.++|+|.|-+|+-+..+-+.+.| +.++.++.+.|..+.+.+
T Consensus 85 ~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~lsv~~ 144 (313)
T cd02874 85 PEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTLSTAV 144 (313)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 4444 488999999999999999999865332233334 456666665554333333
No 171
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=28.99 E-value=2.2e+02 Score=32.19 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=38.1
Q ss_pred CeeEEEEeCCCC-cEEEEEEeCCCCC-eEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccce---eccEEEEEEcCcc
Q 006587 556 GIRSWIATGREG-EIYVAFFNLNTEK-TLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGV---LQQTLSTAVGMHG 630 (639)
Q Consensus 556 ~~~VW~~~l~dG-~~~ValfN~~~~~-~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~---~~~~~s~~v~~Hg 630 (639)
..-++.+...++ +.+|+++|.++.+ .+++++ . . .+ .-..+||-+...... ..+.++++||+++
T Consensus 407 ~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~--~-~--~~-------~~~~~d~~~~~~~~~~~~~~G~~~~~l~~~s 474 (479)
T PRK09441 407 NCIGWTRSGDEENPGLAVVISNGDAGEKTMEVG--E-N--YA-------GKTWRDYTGNRQETVTIDEDGWGTFPVNGGS 474 (479)
T ss_pred CEEEEEEecCCCCccEEEEEECCCCCcEEEEeC--c-c--CC-------CCEeEhhhCCCCCeEEECCCCeEEEEECCce
Confidence 456777776554 4566666655433 334442 1 1 11 134566654443111 2367899999999
Q ss_pred EEEE
Q 006587 631 CALF 634 (639)
Q Consensus 631 ~~l~ 634 (639)
++|+
T Consensus 475 ~~i~ 478 (479)
T PRK09441 475 VSVW 478 (479)
T ss_pred EEEe
Confidence 9987
No 172
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=28.28 E-value=2.9e+02 Score=24.06 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=33.0
Q ss_pred EEeCCCCcEEEEEE-eCCC-CCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccce-eccEEEEEEcC
Q 006587 561 IATGREGEIYVAFF-NLNT-EKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGV-LQQTLSTAVGM 628 (639)
Q Consensus 561 ~~~l~dG~~~Valf-N~~~-~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~-~~~~~s~~v~~ 628 (639)
.+++.+|..+|.+| |.+. ....+++.++..|.. . .-.+.|+.+.++.-. ..+.+++.+..
T Consensus 11 ~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~-~-------g~~v~dVlsc~~~tv~~~G~l~v~m~~ 73 (91)
T PF09260_consen 11 FRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFS-A-------GTEVTDVLSCTSYTVDSNGTLTVPMSN 73 (91)
T ss_dssp EEESSTTT-EEEEEE-S-T-T---EEEEESS-----T-------T-EEEETTTTEEEE--TTS-EEEEEST
T ss_pred EEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCC-C-------CCEEEEEecCCEEEECCCCEEEEEEcC
Confidence 44666776555555 5666 467888888877763 2 478999999997533 35677777655
No 173
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=28.25 E-value=2.7e+02 Score=30.99 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.7
Q ss_pred hHHHHHHHHHcCCEEEEEeecCc
Q 006587 120 FTEVAKKVHAMGLKFGIHVMRGI 142 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy~~pg~ 142 (639)
++.+++.+++.||.||||.....
T Consensus 103 vgela~Avr~qGL~FGvy~s~a~ 125 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGAW 125 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccCc
Confidence 78999999999999999998543
No 174
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=27.95 E-value=4.7e+02 Score=28.52 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=34.5
Q ss_pred HHHHHHHHHH--hhCCCEEEecCCCCC-----------CCChHH-HHHHHHHHHhcCCCeEEE
Q 006587 201 FLRSLYQQYA--EWGVDFVKHDCVFGD-----------DLDINE-ISFVSEVLKELDRPIVYS 249 (639)
Q Consensus 201 y~~~~~~~~a--~WGvDylK~D~~~~~-----------~~~~~~-~~~m~~al~~~Gr~i~ls 249 (639)
.+..-++.|+ +.|+|.||+.+.... .|+.++ .+.+++..+.++.|+++.
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEE
Confidence 4566678888 599999999975321 123333 356888888899998774
No 175
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.54 E-value=3.1e+02 Score=26.81 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=16.1
Q ss_pred hHHHHHHHHHcCCEEEEE
Q 006587 120 FTEVAKKVHAMGLKFGIH 137 (639)
Q Consensus 120 mk~lad~ih~kGlK~GIy 137 (639)
++.+.++++++|+++++-
T Consensus 91 ~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 689999999999999985
No 176
>smart00642 Aamy Alpha-amylase domain.
Probab=27.27 E-value=1.1e+02 Score=29.52 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHcCCEEEEE
Q 006587 118 KGFTEVAKKVHAMGLKFGIH 137 (639)
Q Consensus 118 ~Gmk~lad~ih~kGlK~GIy 137 (639)
..|+.|++.+|++|+|+=+=
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 70 EDFKELVDAAHARGIKVILD 89 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 46999999999999997443
No 177
>PRK06233 hypothetical protein; Provisional
Probab=27.22 E-value=3e+02 Score=30.19 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=26.9
Q ss_pred cccccCCHHHHHHHHHHHH---hccccCCceEEEecccccc
Q 006587 45 SFCWTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLWYR 82 (639)
Q Consensus 45 ~~~~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdgW~~ 82 (639)
.||.+ .|+.+.+.|+++. +.|.++|..||+||+.-..
T Consensus 157 ~~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~ 196 (372)
T PRK06233 157 KFYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWA 196 (372)
T ss_pred ccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHH
Confidence 35543 3667777788775 3588999999999997643
No 178
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=27.05 E-value=62 Score=30.74 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHhhhcccccccC-------C----CCCCCCceEecCcccccccCCHHHHHHHHHHHHhccccCCc
Q 006587 3 IFVLNLSAVCLYLAFLLHRVSSISEAV-------P----VRASSPPRGWNSYDSFCWTISEEEFLQSAEIISQRLRPHGY 71 (639)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~a~tPPmGWnSW~~~~~~ite~~v~~~ad~~a~gL~~~Gy 71 (639)
.|++.+.+.|-++.+.+........+. | -++..|| +|+++++..+.+..+.+|...|-
T Consensus 44 ~F~~vLt~g~fal~~~~~~r~~IpGA~~~~~VyDnG~~~vVi~v~~-----------~i~~~~leaTL~QaA~nL~s~GR 112 (145)
T PF10726_consen 44 SFMLVLTVGCFALSLSYFPRVVIPGAVRYPIVYDNGADQVVIAVPP-----------DITPEALEATLEQAASNLFSGGR 112 (145)
T ss_pred HHHHHHHHHHHHheeccCCCccccCceEeeEEEECCCcEEEEEcCC-----------CCCHHHHHHHHHHHHHhccccCc
Confidence 477888888866665443332222221 1 1233344 79999999999999988887764
No 179
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=26.99 E-value=1e+02 Score=32.26 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.3
Q ss_pred HHHHHhhCCCEEEecCC
Q 006587 206 YQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~ 222 (639)
++.+.++|||.|--|.+
T Consensus 274 ~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 274 RKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHcCCCEEEecCC
Confidence 57788999999988863
No 180
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=26.62 E-value=2.3e+02 Score=31.20 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=51.4
Q ss_pred cccCCHHHHHHHHHHHH---hccccCCceEEEe--------cccccccccCCccccCCCcccccCCCCcccCCCCCCCCC
Q 006587 47 CWTISEEEFLQSAEIIS---QRLRPHGYEYVVV--------DYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSR 115 (639)
Q Consensus 47 ~~~ite~~v~~~ad~~a---~gL~~~Gy~yi~I--------DdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~ 115 (639)
-..+|+++|.+.++.++ +..+++||+-|-| |-.+....+. -.|+||--.-|..||+
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~----------RtD~YGGSlENR~Rf~--- 202 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNK----------RTDEYGGSLENRARFL--- 202 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCC----------CCCccCCcHHHHHHHH---
Confidence 34589999999998663 4567899999877 3333322211 1488987788888998
Q ss_pred CCCChHHHHHHHHH---cCCEEEEEeec
Q 006587 116 GGKGFTEVAKKVHA---MGLKFGIHVMR 140 (639)
Q Consensus 116 ~~~Gmk~lad~ih~---kGlK~GIy~~p 140 (639)
..+++.|++ ..+-.|+=+.|
T Consensus 203 -----~EVv~aVr~~vg~~~~vg~Rls~ 225 (363)
T COG1902 203 -----LEVVDAVREAVGADFPVGVRLSP 225 (363)
T ss_pred -----HHHHHHHHHHhCCCceEEEEECc
Confidence 677777776 23345666544
No 181
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=26.58 E-value=1.7e+02 Score=30.95 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=36.8
Q ss_pred chHHHH-HHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcCCCeEEEc
Q 006587 195 LGAGRA-FLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELDRPIVYSL 250 (639)
Q Consensus 195 ~p~~q~-y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~----~~m~~al~~~Gr~i~lsl 250 (639)
+|..|+ +++++++...+.|+|.|-+||-+..+.+.+.| +.+++++.+.|..+.+++
T Consensus 85 ~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v 145 (298)
T cd06549 85 DPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTV 145 (298)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 344444 78999999999999999999854332333344 456666666665444443
No 182
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=26.32 E-value=2.2e+02 Score=34.40 Aligned_cols=74 Identities=15% Similarity=0.294 Sum_probs=50.7
Q ss_pred ccCCHHHHHHHHHHHH---hccccCCceEEEecccc--------cccccCCccccCCCcccccCCCCcccCCCCCCCCCC
Q 006587 48 WTISEEEFLQSAEIIS---QRLRPHGYEYVVVDYLW--------YRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRG 116 (639)
Q Consensus 48 ~~ite~~v~~~ad~~a---~gL~~~Gy~yi~IDdgW--------~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~ 116 (639)
..+|+++|.+..+.++ +..+++|++-|.|=.+= ....+. -.|+||--.-|..||+
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~----------RtD~yGGslenR~r~~---- 604 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQ----------RTDEYGGSLENRLRYP---- 604 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCC----------CCCCCCCCHHHHhHHH----
Confidence 3589999999998653 45678999999997661 111111 1478887666667887
Q ss_pred CCChHHHHHHHHHc---CCEEEEEee
Q 006587 117 GKGFTEVAKKVHAM---GLKFGIHVM 139 (639)
Q Consensus 117 ~~Gmk~lad~ih~k---GlK~GIy~~ 139 (639)
..+++.|++. .+.+|+=+.
T Consensus 605 ----~eiv~~ir~~~~~~~~v~~ri~ 626 (765)
T PRK08255 605 ----LEVFRAVRAVWPAEKPMSVRIS 626 (765)
T ss_pred ----HHHHHHHHHhcCCCCeeEEEEc
Confidence 6788888873 466666554
No 183
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.20 E-value=45 Score=32.78 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=19.7
Q ss_pred hHHHHHHHHHc-CCEEEEEeecCc
Q 006587 120 FTEVAKKVHAM-GLKFGIHVMRGI 142 (639)
Q Consensus 120 mk~lad~ih~k-GlK~GIy~~pg~ 142 (639)
++.+.+.|+++ |.++|||+.+-.
T Consensus 112 ~~~f~~~v~~~~G~~~~iY~~~~~ 135 (191)
T cd06413 112 LQVFLDALEAHYGKRPIIYTTYDF 135 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEeCHHH
Confidence 78899999985 999999997743
No 184
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=25.93 E-value=43 Score=32.12 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=35.2
Q ss_pred ceEEEEeccCCCcccccCCCccccccccccceeccCCCC-CCCceeeCC--CC--ceeccCcCceeEeccc
Q 006587 483 GKVHLLASKGVGVCLDASPKWKLTSKELRRGSFSKCKRD-ANQMWQLNP--SG--ALISSYSGLCATVNLV 548 (639)
Q Consensus 483 ~~~~i~~~~~~~~CLda~~~~~~t~~~~~~~~~~~C~~~-~~Q~W~~~~--~G--~l~~~~sg~Cl~v~~~ 548 (639)
+.+++.+-+.+. ||.+..+|.+ ..-+ |+.. ..|.|++.+ +| .|.+..++.|+.+...
T Consensus 52 g~Vqf~n~~~~~-CL~~~~~G~~-------~~~~-C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~ 113 (150)
T PF03498_consen 52 GYVQFVNPKTGT-CLAAYGNGVF-------HYKS-CDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNN 113 (150)
T ss_dssp CEEEEEETTTSE-EEEEETTCEE-------EE---TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-ST
T ss_pred CEEEEEcCCCCc-ceeecCCCeE-------eecc-cCCCChhceEEEEEcCCCcEEEEecCCCceEEecCC
Confidence 567777765555 9999765553 2334 9875 479999965 45 4677777888887654
No 185
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.82 E-value=4.1e+02 Score=27.69 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEc
Q 006587 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSL 250 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsl 250 (639)
++.+++ .+|++|+=--. ... ..+-+++.++|+||+++-
T Consensus 92 v~~~~e-~vdilqIgs~~-----~~n-~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 92 LEEAYD-YLDVIQVGARN-----MQN-FEFLKTLSHIDKPILFKR 129 (250)
T ss_pred HHHHHh-cCCEEEECccc-----ccC-HHHHHHHHccCCeEEEeC
Confidence 355667 69999986311 111 336667778899999874
No 186
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=25.52 E-value=2.3e+02 Score=29.40 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHH----HHHHHHHHhcC
Q 006587 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEI----SFVSEVLKELD 243 (639)
Q Consensus 199 q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~----~~m~~al~~~G 243 (639)
+.+++++.+.+.++|+|.|-+|+-+.. .+.+.+ +.+++++++.+
T Consensus 99 ~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~ 146 (253)
T cd06544 99 SNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNG 146 (253)
T ss_pred HHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcC
Confidence 556888899999999999999997542 234443 45677776655
No 187
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=24.93 E-value=1.3e+02 Score=34.04 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCEEEecC-CCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006587 202 LRSLYQQYAEWGVDFVKHDC-VFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~-~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls~ 252 (639)
+..++..++.=| ||||=|- +...++.+ +++ ++++++-+++|+..+|..+.
T Consensus 175 ~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~Ni 231 (439)
T cd08211 175 FAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRAQDETGEAKLFSANI 231 (439)
T ss_pred HHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEecC
Confidence 445566777889 9999994 55555654 333 67888888999988877653
No 188
>PRK08005 epimerase; Validated
Probab=24.85 E-value=7.3e+02 Score=25.05 Aligned_cols=107 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHc
Q 006587 51 SEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAM 130 (639)
Q Consensus 51 te~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~k 130 (639)
+...+.+.++. |.++|.+++.+| .|| |.++|| -.|. ..+.+.|++.
T Consensus 11 d~~~l~~el~~----l~~~g~d~lHiD-------------------vMD--G~FVPN-~tfG--------~~~i~~l~~~ 56 (210)
T PRK08005 11 DPLRYAEALTA----LHDAPLGSLHLD-------------------IED--TSFINN-ITFG--------MKTIQAVAQQ 56 (210)
T ss_pred CHHHHHHHHHH----HHHCCCCEEEEe-------------------ccC--CCcCCc-cccC--------HHHHHHHHhc
Q ss_pred C-CEEEEEeecCccccccCCCCcccccccCCcccccCccccccccccccccccccCCCceeecCCchHHHHHHHHHHHHH
Q 006587 131 G-LKFGIHVMRGISTQAFNADTPILDTLKGGAYEDSGRQWRAKDIGLKERACAWMQHGFMSVNTKLGAGRAFLRSLYQQY 209 (639)
Q Consensus 131 G-lK~GIy~~pg~~~~a~~~~spi~gt~~~~~y~~~g~~~~~~di~~~~~~c~~~~~~~~~lD~t~p~~q~y~~~~~~~~ 209 (639)
- +.+=+|+|- ++|+ .+++.|
T Consensus 57 t~~~~DvHLMv-----------------------------------------------------~~P~------~~i~~~ 77 (210)
T PRK08005 57 TRHPLSFHLMV-----------------------------------------------------SSPQ------RWLPWL 77 (210)
T ss_pred CCCCeEEEecc-----------------------------------------------------CCHH------HHHHHH
Q ss_pred HhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCCC
Q 006587 210 AEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGTG 255 (639)
Q Consensus 210 a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~g~~ 255 (639)
++-|.|+|=+-. .......++-+.|++.|-..-+.++|+.+
T Consensus 78 ~~~gad~It~H~-----Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp 118 (210)
T PRK08005 78 AAIRPGWIFIHA-----ESVQNPSEILADIRAIGAKAGLALNPATP 118 (210)
T ss_pred HHhCCCEEEEcc-----cCccCHHHHHHHHHHcCCcEEEEECCCCC
No 189
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=24.81 E-value=1.1e+02 Score=27.72 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHH
Q 006587 50 ISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 50 ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~ 129 (639)
-+-+........+++.+++.|.+.++.|-| | .+|-+ -+++|++-+++
T Consensus 58 ~n~~aA~~vG~lla~ra~~~gi~~vvfDrg----------------------g------~~yhG-----rV~a~a~~are 104 (109)
T CHL00139 58 STCDASKLVGQKLAKKSLKKGITKVVFDRG----------------------G------KLYHG-----RIKALAEAARE 104 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEcCC----------------------C------Cccch-----HHHHHHHHHHH
Confidence 444556666677888899999999999932 1 12322 49999999999
Q ss_pred cCCEE
Q 006587 130 MGLKF 134 (639)
Q Consensus 130 kGlK~ 134 (639)
.||+|
T Consensus 105 ~GL~f 109 (109)
T CHL00139 105 AGLQF 109 (109)
T ss_pred hCCCC
Confidence 99987
No 190
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=24.81 E-value=4.4e+02 Score=28.86 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhCCCEEEecCCCC-CCC----------------ChH-HHHHHHHHHHhc---CCCeEEEc
Q 006587 201 FLRSLYQQYAEWGVDFVKHDCVFG-DDL----------------DIN-EISFVSEVLKEL---DRPIVYSL 250 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D~~~~-~~~----------------~~~-~~~~m~~al~~~---Gr~i~lsl 250 (639)
++..-++.=++.|.|+||..+... ..+ +.+ ..+.++.+++.+ .+|++++-
T Consensus 218 ~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAG 288 (348)
T PRK09250 218 LTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSG 288 (348)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeC
Confidence 455556777899999999998742 110 000 124577778776 56888763
No 191
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=24.65 E-value=2.3e+02 Score=30.18 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCCCC--Ch---HHHHH-HHHHHHhcCCCeEEEcCC
Q 006587 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGDDL--DI---NEISF-VSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 198 ~q~y~~~~~~~~a~WGvDylK~D~~~~~~~--~~---~~~~~-m~~al~~~Gr~i~lsls~ 252 (639)
.+.|.+++.+.+.++|+|-|=+|+-+.... .+ +.+.. +++.-++.++.+++++.|
T Consensus 95 ~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP 155 (312)
T cd02871 95 EDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAP 155 (312)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 467889999999999999999998653221 12 33332 333333456678888876
No 192
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.55 E-value=4.9e+02 Score=27.01 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=34.5
Q ss_pred HHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006587 206 YQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls 251 (639)
++.++..|||||=+|.= +.+++.++...|-+|++..|-+.+.-+.
T Consensus 33 ~e~~a~~G~D~v~iD~E-Hg~~~~~~~~~~i~a~~~~g~~~lVRvp 77 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGE-HAPNDVSTFIPQLMALKGSASAPVVRVP 77 (256)
T ss_pred HHHHHhcCCCEEEEccc-cCCCCHHHHHHHHHHHhhcCCCcEEECC
Confidence 57899999999999963 3467778888888888888866555543
No 193
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.29 E-value=99 Score=31.00 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHcCCEEEEEeecCcccc
Q 006587 119 GFTEVAKKVHAMGLKFGIHVMRGISTQ 145 (639)
Q Consensus 119 Gmk~lad~ih~kGlK~GIy~~pg~~~~ 145 (639)
.+..+.++||++|+|+||-+.|+++..
T Consensus 93 ~~~~~i~~ik~~g~k~GialnP~T~~~ 119 (201)
T PF00834_consen 93 DPKETIKYIKEAGIKAGIALNPETPVE 119 (201)
T ss_dssp THHHHHHHHHHTTSEEEEEE-TTS-GG
T ss_pred CHHHHHHHHHHhCCCEEEEEECCCCch
Confidence 488999999999999999999987654
No 194
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=24.03 E-value=1.2e+02 Score=31.74 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHhhCCCEEEecCC
Q 006587 206 YQQYAEWGVDFVKHDCV 222 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~ 222 (639)
++.+.+||||.|=-|++
T Consensus 266 ~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 266 VERQADLGVDGVIVDHV 282 (282)
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 57889999999988863
No 195
>PRK05402 glycogen branching enzyme; Provisional
Probab=23.98 E-value=2.2e+02 Score=34.17 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhCCCEEEecCCCC------CCC-------------ChHHHHHHHHHHHhcCCCeEEEcCC
Q 006587 200 AFLRSLYQQYAEWGVDFVKHDCVFG------DDL-------------DINEISFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 200 ~y~~~~~~~~a~WGvDylK~D~~~~------~~~-------------~~~~~~~m~~al~~~Gr~i~lsls~ 252 (639)
+..+.++..+++.||+.|-+=-+.. -.| ++++++.|-+++.+.|-.|++.+.+
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3344545677889998886654321 011 2456777777788888888888764
No 196
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=23.60 E-value=1.5e+02 Score=32.61 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCCCEEEecCCCC-CCC-Ch-HHHHH----HHHHHHhcCCCeEEEc
Q 006587 202 LRSLYQQYAEWGVDFVKHDCVFG-DDL-DI-NEISF----VSEVLKELDRPIVYSL 250 (639)
Q Consensus 202 ~~~~~~~~a~WGvDylK~D~~~~-~~~-~~-~~~~~----m~~al~~~Gr~i~lsl 250 (639)
+..++..+++=|||+||.|...+ .++ +. +++++ ++++-+++|+..+|..
T Consensus 148 la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~ 203 (367)
T cd08205 148 LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAP 203 (367)
T ss_pred HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 55567788889999999997544 233 33 33444 4444567788544443
No 197
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=23.58 E-value=1.7e+02 Score=31.13 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEecCCCCCC----------CChHHH----HHHHHHHHhc----CCCeEEEcC
Q 006587 199 RAFLRSLYQQYAEWGVDFVKHDCVFGDD----------LDINEI----SFVSEVLKEL----DRPIVYSLS 251 (639)
Q Consensus 199 q~y~~~~~~~~a~WGvDylK~D~~~~~~----------~~~~~~----~~m~~al~~~----Gr~i~lsls 251 (639)
+.|++++++.+.+.|+|.|=+|+-+... .+.+.+ +.++.++.+. +++.+|++.
T Consensus 111 ~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~a 181 (322)
T cd06548 111 AKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIA 181 (322)
T ss_pred HHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 4588999999999999999999865321 122333 4577777664 467777775
No 198
>PRK07534 methionine synthase I; Validated
Probab=23.57 E-value=2.2e+02 Score=30.83 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHHHHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcC
Q 006587 193 TKLGAGRAFLRSLYQQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLS 251 (639)
Q Consensus 193 ~t~p~~q~y~~~~~~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls 251 (639)
.+..+.+++|...++.|.+=|||+|=+--+ .+.+|.+++.+++++.+.|+++|++
T Consensus 124 ~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~----p~l~E~~a~~~~~~~~~~Pv~vSft 178 (336)
T PRK07534 124 LTHALAVEAFHEQAEGLKAGGADVLWVETI----SAPEEIRAAAEAAKLAGMPWCGTMS 178 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CCHHHHHHHHHHHHHcCCeEEEEEE
Confidence 344456777777888999999999987744 3467888888999988999999876
No 199
>TIGR03586 PseI pseudaminic acid synthase.
Probab=23.41 E-value=2.5e+02 Score=30.44 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=13.4
Q ss_pred hHHHHHHHHHcCCEE
Q 006587 120 FTEVAKKVHAMGLKF 134 (639)
Q Consensus 120 mk~lad~ih~kGlK~ 134 (639)
++.|.+|++++|+.|
T Consensus 79 ~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 79 HKELFERAKELGLTI 93 (327)
T ss_pred HHHHHHHHHHhCCcE
Confidence 578999999999988
No 200
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=79 Score=36.50 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=30.1
Q ss_pred CCCcccCCCCCCCCCCCCChHHHHHHHHHcCCEEEEEe
Q 006587 101 WGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLKFGIHV 138 (639)
Q Consensus 101 ~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK~GIy~ 138 (639)
-|+++.|++.||. =+..+.+.+|..|.+++.|-
T Consensus 261 lGDPvG~~~~~~e-----li~~F~e~A~~~G~r~~fy~ 293 (538)
T COG2898 261 LGDPVGDEEAWPE-----LIWAFLELADRHGWRPVFYG 293 (538)
T ss_pred ecCCCCChhHhHH-----HHHHHHHHHHhcCCeeEEEE
Confidence 4889999999998 58999999999999999995
No 201
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=22.57 E-value=7.5e+02 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=30.3
Q ss_pred CceeecCCchHHHHHHHHHHHHHHh-hCCCEEEecC
Q 006587 187 GFMSVNTKLGAGRAFLRSLYQQYAE-WGVDFVKHDC 221 (639)
Q Consensus 187 ~~~~lD~t~p~~q~y~~~~~~~~a~-WGvDylK~D~ 221 (639)
.|+-||+-.|++++++.++++-++. .-||.|-+|.
T Consensus 431 ~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 431 QYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 3555999999999999999998886 6999999985
No 202
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=22.41 E-value=2.1e+02 Score=31.36 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=33.7
Q ss_pred ccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHHHHHHcCCE-EEEEe
Q 006587 65 RLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAKKVHAMGLK-FGIHV 138 (639)
Q Consensus 65 gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad~ih~kGlK-~GIy~ 138 (639)
.+.++|-+-|+|.|.|..... ..+ ++.=.+| .++.+.+.|++.+-. +=||.
T Consensus 197 ~qi~aGAdavqifDsW~g~l~------------~~~-----~~~f~~~------~~~~i~~~vk~~~~~~pii~f 248 (352)
T COG0407 197 AQIEAGADAVQIFDSWAGVLS------------MID-----YDEFVLP------YMKRIVREVKEVKGGVPVIHF 248 (352)
T ss_pred HHHHhCCCEEEeeccccccCC------------ccc-----HHHHhhh------HHHHHHHHHHHhCCCCcEEEE
Confidence 456889999999999975421 111 1212346 599999999987663 44444
No 203
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=22.26 E-value=1.8e+02 Score=29.41 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.5
Q ss_pred HHHHHhhCCCEEEecCCC
Q 006587 206 YQQYAEWGVDFVKHDCVF 223 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~ 223 (639)
++.+.+||||.|=-|++.
T Consensus 219 ~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 219 AQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 678999999999988764
No 204
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=22.26 E-value=2.2e+02 Score=31.92 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhCCCEEEecCCCCC----------CCChHHH----HHHHHHHHhc----CCCeEEEcC
Q 006587 198 GRAFLRSLYQQYAEWGVDFVKHDCVFGD----------DLDINEI----SFVSEVLKEL----DRPIVYSLS 251 (639)
Q Consensus 198 ~q~y~~~~~~~~a~WGvDylK~D~~~~~----------~~~~~~~----~~m~~al~~~----Gr~i~lsls 251 (639)
-+.|.++.++.++.|+||.|-+|+=|+. +.+.+.| +.+|+.|.+. ||...|++-
T Consensus 152 re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA 223 (441)
T COG3325 152 RENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIA 223 (441)
T ss_pred HHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEe
Confidence 3457899999999999999999996631 1233444 3466777654 555566653
No 205
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=21.60 E-value=1.8e+02 Score=35.50 Aligned_cols=49 Identities=20% Similarity=0.074 Sum_probs=35.7
Q ss_pred eeecCCchHHHHHHHHHHHHHHhhC-CCEEEecCCCCCCCChHHH-HHHHHH
Q 006587 189 MSVNTKLGAGRAFLRSLYQQYAEWG-VDFVKHDCVFGDDLDINEI-SFVSEV 238 (639)
Q Consensus 189 ~~lD~t~p~~q~y~~~~~~~~a~WG-vDylK~D~~~~~~~~~~~~-~~m~~a 238 (639)
..|...+|+|.++.-.++..+.+=| ||.|.+|...+ -.+|..| +.++++
T Consensus 222 ~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dG-L~dP~~Yl~rLr~~ 272 (825)
T TIGR02401 222 AGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDG-LADPEGYLRRLREL 272 (825)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCCceEEeccccc-cCChHHHHHHHHHh
Confidence 4477889999998877777766667 99999998743 2466666 455543
No 206
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=21.57 E-value=1.8e+02 Score=35.74 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=47.0
Q ss_pred ccccCCHHHHHHHHHHHHhccccCCceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCCCCCCCCChHHHHH
Q 006587 46 FCWTISEEEFLQSAEIISQRLRPHGYEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWPSSRGGKGFTEVAK 125 (639)
Q Consensus 46 ~~~~ite~~v~~~ad~~a~gL~~~Gy~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP~~~~~~Gmk~lad 125 (639)
|....+-+.+.+.++++ +++|++.|.+=--+.... | ...||+..| ....|+ +|. +..+|+.|++
T Consensus 13 ~~~~~tf~~~~~~l~YL----~~LGis~IyLsPi~~a~~--g---s~hGYdv~D---~~~idp-~lG---t~e~f~~Lv~ 76 (879)
T PRK14511 13 FHAGFTFDDAAELVPYF----ADLGVSHLYLSPILAARP--G---STHGYDVVD---HTRINP-ELG---GEEGLRRLAA 76 (879)
T ss_pred eCCCCCHHHHHHHhHHH----HHcCCCEEEECcCccCCC--C---CCCCCCcCC---CCCcCC-CCC---CHHHHHHHHH
Confidence 45567788888888874 678888887654333211 1 011332222 223332 233 2347999999
Q ss_pred HHHHcCCEEEEEee
Q 006587 126 KVHAMGLKFGIHVM 139 (639)
Q Consensus 126 ~ih~kGlK~GIy~~ 139 (639)
.+|++||++=+=+.
T Consensus 77 aah~~Gi~VIlDiV 90 (879)
T PRK14511 77 ALRAHGMGLILDIV 90 (879)
T ss_pred HHHHCCCEEEEEec
Confidence 99999999755443
No 207
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=21.49 E-value=1.7e+02 Score=33.15 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCEEEec-CCCCCCCCh--HHH----HHHHHHHHhcCCCeEEEcCC
Q 006587 201 FLRSLYQQYAEWGVDFVKHD-CVFGDDLDI--NEI----SFVSEVLKELDRPIVYSLSP 252 (639)
Q Consensus 201 y~~~~~~~~a~WGvDylK~D-~~~~~~~~~--~~~----~~m~~al~~~Gr~i~lsls~ 252 (639)
|-+..++.+.. +||||=| .+...++.+ +++ +++++|-+++|+..+|..+.
T Consensus 176 ~a~~~ye~~~G--gD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~Ni 232 (443)
T PRK13475 176 FAEACYDFWLG--GDFIKNDEPQGNQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANI 232 (443)
T ss_pred HHHHHHHHHhc--CCcccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccC
Confidence 33333344444 5999999 455555554 333 57888888999987777653
No 208
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=21.38 E-value=4.9e+02 Score=26.76 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHhhCCCEEEecCCCCCCC-----ChHHHHHHHHHHHhcCCCeEEEc
Q 006587 206 YQQYAEWGVDFVKHDCVFGDDL-----DINEISFVSEVLKELDRPIVYSL 250 (639)
Q Consensus 206 ~~~~a~WGvDylK~D~~~~~~~-----~~~~~~~m~~al~~~Gr~i~lsl 250 (639)
+..+++.-|||||+|-.+-..+ +..-++.+-...++.|-.++..-
T Consensus 164 l~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 164 LSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred HHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 4678899999999994221111 11124566666677777776653
No 209
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.32 E-value=2.3e+02 Score=33.29 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=37.8
Q ss_pred eeEEEEeCCCCcEEEEEEeCCCCCeEEEEecchhhhcCCCCCCCCCeeeEEeccCCCccceeccEEEEEEcC
Q 006587 557 IRSWIATGREGEIYVAFFNLNTEKTLISTKISDLAKALPGKNLNGASCKCREVWSAKDYGVLQQTLSTAVGM 628 (639)
Q Consensus 557 ~~VW~~~l~dG~~~ValfN~~~~~~~it~~l~~lG~~l~~~~~~~~~~~vrDlW~~~~~g~~~~~~s~~v~~ 628 (639)
.-++.+.. +++.++.++|.+ +.++++++..+++. .....++..+... ...+++.++||+
T Consensus 540 v~af~R~~-~~~~vlVviN~s-~~~~v~lp~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~ 598 (598)
T PRK10785 540 VVVFARVL-QQQRVLVAINRG-EACEVVLPASPLLN----------VAQWQRKEGHGDL-TDGGGVILTLPA 598 (598)
T ss_pred EEEEEEEC-CCCEEEEEEECC-CCeEEecccccccC----------CcceeeccCceeE-EecCeeEEecCC
Confidence 45666654 457889999998 67889998887652 2344455555543 234456667664
No 210
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=20.77 E-value=2.2e+02 Score=32.22 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred eCCC-CcEEEEEEeCCCCC-eEEEEecchhhhc-------CCCCCCCCCeeeEEeccC---------CCccceeccEEEE
Q 006587 563 TGRE-GEIYVAFFNLNTEK-TLISTKISDLAKA-------LPGKNLNGASCKCREVWS---------AKDYGVLQQTLST 624 (639)
Q Consensus 563 ~l~d-G~~~ValfN~~~~~-~~it~~l~~lG~~-------l~~~~~~~~~~~vrDlW~---------~~~~g~~~~~~s~ 624 (639)
-.++ |+++|.+.|+..+. .+++|.|..+... |.+ ....++.-.. ++.....++.++.
T Consensus 412 ~~~~~~~l~i~vvN~~~~d~~~~~i~l~G~~~a~~~~~~~lt~-----~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~ 486 (501)
T COG3534 412 YDEEGGELTIFVVNRALEDALKLNISLNGLKKAKSAEHQVLTG-----DDLNATNTFDAPENVVPVPGKGATVSKNELTL 486 (501)
T ss_pred ecccCCeEEEEEEeccccccccceEEeccccccceeeEEEEec-----CccccccCCCCCCceecccCCCccccCCceeE
Confidence 3455 78999999987655 7888888877530 111 1122222222 1111122348999
Q ss_pred EEcCccEEEEEEec
Q 006587 625 AVGMHGCALFVLNC 638 (639)
Q Consensus 625 ~v~~Hg~~l~~l~~ 638 (639)
++||+.+.|+||++
T Consensus 487 ~~~~~S~~virl~~ 500 (501)
T COG3534 487 DLPPLSVSVIRLKL 500 (501)
T ss_pred ecCCceEEEEEEec
Confidence 99999999999986
No 211
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=20.77 E-value=1.1e+02 Score=25.83 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=27.2
Q ss_pred ceEEEecccccccccCCccccCCCcccccCCCCcccCCCCCC-CCCCCCChHHHHHHHHH
Q 006587 71 YEYVVVDYLWYRRKVKGAYVDSLGFDVIDEWGRMIPDPDRWP-SSRGGKGFTEVAKKVHA 129 (639)
Q Consensus 71 y~yi~IDdgW~~~~~~~~~~~~~~~~~~D~~G~l~pd~~rFP-~~~~~~Gmk~lad~ih~ 129 (639)
|+.+.||||.-.. |++.|...-| -+.| . ..|...|++
T Consensus 5 YqLidI~DG~lsL--------------M~e~G~~kdD-l~lP~~-------~~l~~~I~~ 42 (75)
T cd04469 5 YRVLDIQDGSIVA--------------MTETGDVKQG-LPVIDQ-------SNLWTRLKT 42 (75)
T ss_pred EEEEEecCCeEEE--------------EcCCCCcccC-ccCCCc-------chHHHHHHH
Confidence 7889999888764 5777888777 4678 5 367777765
No 212
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=4.4e+02 Score=24.60 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHhhCCCEEEecCCCCCCCChHHHHHHHHHHHhcCCCeEEEcCCCC
Q 006587 207 QQYAEWGVDFVKHDCVFGDDLDINEISFVSEVLKELDRPIVYSLSPGT 254 (639)
Q Consensus 207 ~~~a~WGvDylK~D~~~~~~~~~~~~~~m~~al~~~Gr~i~lsls~g~ 254 (639)
+....-|++|.-+= +.+..+..+.++.|++||.++++||+--|-.|.
T Consensus 52 ~aa~~aGl~y~~iP-V~~~~iT~~dV~~f~~Al~eaegPVlayCrsGt 98 (130)
T COG3453 52 AAAEAAGLTYTHIP-VTGGGITEADVEAFQRALDEAEGPVLAYCRSGT 98 (130)
T ss_pred HHHHhcCCceEEee-cCCCCCCHHHHHHHHHHHHHhCCCEEeeecCCc
Confidence 34456788865433 224457788899999999999999766554443
Done!