BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006588
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 50/278 (17%)
Query: 57 ISIVGMGGIGKTTLAQLAC-NHDEVKRQFDK-ILWVCVSETFDEFRIAKAMLEALTGSTS 114
++I GM G GK+ LA A +H ++ F + WV V + + +L L +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 204
Query: 115 NLDALQS----LLISIDESI---------AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL 161
LD +S L ++I+E+ R LL+LDDVWD W LK
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFD 255
Query: 162 HGSKILITTRNESIA-SMMRSTDVISIK-ELAEEECWALFKQLAFFGRSTEECEKLEQIG 219
+IL+TTR++S+ S+M V+ ++ L +E+ + ++ L +
Sbjct: 256 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKAD-----LPEQA 310
Query: 220 QRIARKCKGLPLAAKTMGGLMSS----------KKTEEEWKRILNSDLWKVEEIEKGFLT 269
I ++CKG PL +G L+ + +++KRI S + E +++
Sbjct: 311 HSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEA--- 367
Query: 270 PLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLW 307
+ +S L +K ++ ++ KD + L LW
Sbjct: 368 -MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 404
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 121/281 (43%), Gaps = 56/281 (19%)
Query: 57 ISIVGMGGIGKTTLAQLAC-NHDEVKRQFDK-ILWVCVSETFDEFRIAKAMLEALTGSTS 114
++I GM G GK+ LA A +H ++ F + WV + + + +L L
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-----QDKSGLLMKLQNLCM 204
Query: 115 NLDALQS----LLISIDESI---------AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL 161
LD +S L ++I+E+ R LL+LDDVWD P+ LK
Sbjct: 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PW--VLKAFD 255
Query: 162 HGSKILITTRNESIA-SMMRSTDVISIKE-LAEE---ECWALFKQLAFFGRSTEECEKLE 216
+ +IL+TTR++S+ S+M V+ ++ L E E +LF + + E L
Sbjct: 256 NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--------KKEDLP 307
Query: 217 QIGQRIARKCKGLPLAAKTMGGLMSS----------KKTEEEWKRILNSDLWKVEEIEKG 266
I ++CKG PL +G L+ + +++KRI S + E +++
Sbjct: 308 AEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367
Query: 267 FLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLW 307
+ +S L +K ++ ++ KD + L LW
Sbjct: 368 ----MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 50/278 (17%)
Query: 57 ISIVGMGGIGKTTLAQLAC-NHDEVKRQF-DKILWVCVSETFDEFRIAKAMLEALTGSTS 114
++I GM G GK+ LA A +H ++ F + WV V + + +L L +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 210
Query: 115 NLDALQS----LLISIDESI---------AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL 161
LD +S L ++I+E+ R LL+LDDVWD W LK
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKAFD 261
Query: 162 HGSKILITTRNESIA-SMMRSTDVISIK-ELAEEECWALFKQLAFFGRSTEECEKLEQIG 219
+IL+TTR++S+ S+M V+ ++ L +E+ + ++ L +
Sbjct: 262 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQA 316
Query: 220 QRIARKCKGLPLAAKTMGGLMSS----------KKTEEEWKRILNSDLWKVEEIEKGFLT 269
I ++CKG PL +G L+ + +++KRI S + E +++
Sbjct: 317 HSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEA--- 373
Query: 270 PLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLW 307
+ +S L +K ++ ++ KD + L LW
Sbjct: 374 -MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 410
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 56/281 (19%)
Query: 57 ISIVGMGGIGKTTLAQLAC-NHDEVKRQFDK-ILWVCVSETFDEFRIAKAMLEALTGSTS 114
++I GM G GK+ LA A +H ++ F + WV + + + +L L
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-----QDKSGLLMKLQNLCM 211
Query: 115 NLDALQS----LLISIDESI---------AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL 161
LD +S L ++I+E+ R LL+LDDVWD P+ LK
Sbjct: 212 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PW--VLKAFD 262
Query: 162 HGSKILITTRNESIA-SMMRSTDVISIKE-LAEE---ECWALFKQLAFFGRSTEECEKLE 216
+ +IL+TT ++S+ S+M V+ ++ L E E +LF + + E L
Sbjct: 263 NQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--------KKEDLP 314
Query: 217 QIGQRIARKCKGLPLAAKTMGGLMSS----------KKTEEEWKRILNSDLWKVEEIEKG 266
I ++CKG PL +G L+ + +++KRI S + E +++
Sbjct: 315 AEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 374
Query: 267 FLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLW 307
+ +S L +K ++ ++ KD + L LW
Sbjct: 375 ----MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 416 SLLIECRRFDHSSLNGEILEEL----FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYL 471
S L E + L G L+ L F +LT+L+ L L S KL +L YL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 472 NLSGQKIEKLPEALCE-LYNLEKLDICSCSCLKELPEGI-GKLINMKYLLNRDTDSVRYM 529
NL+ +++ LP+ + + L NL +LD+ S + L+ LPEG+ KL +K L + ++ +
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKD-LRLYQNQLKSV 196
Query: 530 PVGI-ARLKSLR 540
P G+ RL SL+
Sbjct: 197 PDGVFDRLTSLQ 208
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 43/196 (21%)
Query: 446 ALDFPSLYLPSEIPRNIKKLIHLRY-----------------------LNLSGQKIEKLP 482
AL+ S+ LP + P +L HL++ L L+ + LP
Sbjct: 85 ALELRSVPLP-QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALP 143
Query: 483 EALCELYNLEKLDICSCSCLKELPEGIGK---------LINMKYLLNRDTDSVRYMPVGI 533
++ L L +L I +C L ELPE + L+N++ L + +R +P I
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS-LRLEWTGIRSLPASI 202
Query: 534 ARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDV--GEA--KR 589
A L++L++L ++R S L + L LE L + G L + + G A KR
Sbjct: 203 ANLQNLKSL-KIRNSPLSAL----GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 590 LELDKKKYLFSLTLKF 605
L L L +L L
Sbjct: 258 LILKDCSNLLTLPLDI 273
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 31/125 (24%)
Query: 463 KKLIHLRYLNLSGQKIEKLPEALCELYN-----------------------LEKLDICSC 499
+ L++L+ L L I LP ++ L N LE+LD+ C
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 500 SCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKAC 559
+ L+ P G +K L+ +D ++ +P+ I RL L L+ RGC++
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-----RGCVN---LS 291
Query: 560 RLESL 564
RL SL
Sbjct: 292 RLPSL 296
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 437 LFRELTSLRALDFPSLYLPSEIPRNI-KKLIHLRYLNLSGQKIEKLPEALCE-LYNLEKL 494
+F ELTSL L L S +P + KL L YLNLS +++ LP + + L L++L
Sbjct: 47 VFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 495 DICSCSCLKELPEGI-GKLINMKYLLNRDTDSVRYMPVGI-ARLKSLR 540
+ + + L+ LP+G+ KL +K L + ++ +P G+ RL SL+
Sbjct: 106 AL-NTNQLQSLPDGVFDKLTQLKD-LRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 462 IKKLIHLRYLNLSGQKIEKLPEALCE-LYNLEKLDICSCSCLKELPEGI-GKLINMKYL 518
+K+L +L YL L+G +++ LP + + L NL++L + + L+ LP+G+ KL N+ YL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYL 138
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 419 IECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKI 478
+E F HS+L +F L +L LD + L L L ++G
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 479 EK--LPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIA-R 535
++ LP+ EL NL LD+ C + P L +++ +LN ++ ++ +P GI R
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDR 516
Query: 536 LKSLR 540
L SL+
Sbjct: 517 LTSLQ 521
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 456 SEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINM 515
+E+P IK L +LR L+LS ++ LP L + L+ + + LP G L N+
Sbjct: 260 TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNL 318
Query: 516 KYL 518
++L
Sbjct: 319 QFL 321
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 445 RALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKE 504
ALD +L + I NI K L L L+G + +LP + L NL LD+ S + L
Sbjct: 227 HALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL-SHNRLTS 284
Query: 505 LPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTL 542
LP +G +KY D + V +P L +L+ L
Sbjct: 285 LPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFL 321
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 437 LFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCE-LYNLEKLD 495
+F +L +L L L S PR L L YL+L +++ LP+ + + L +L++L
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 496 ICSCSCLKELPEG-IGKLINMKYLLNRDTDSVRYMPVG 532
+ + + LK +PEG KL +K L D + ++ +P G
Sbjct: 164 LYN-NQLKRVPEGAFDKLTELKT-LKLDNNQLKRVPEG 199
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 463 KKLIHLRYLNLSGQKIEKLP--EALCELYNLEKLDI--CSCSCLKELPEGIGKLI-NMKY 517
+K +L++LNLSG KI+ L E L +L NL+ LD+ C + L E + KL+ + Y
Sbjct: 90 EKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMY 149
Query: 518 LLNRDTDS 525
L D D+
Sbjct: 150 LDGYDRDN 157
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 467 HLRYLNLSGQKIEKLP--EALCELYNLEKLDI--CSCSCLKELPEGIGKLI 513
+L +LNLSG KI+ L E L +L NL+ LD+ C + L + E + KL+
Sbjct: 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 453 YLPSEIPRNIKKLIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGK 511
YL IP ++ L LR L L +E ++P+ L + LE L + E+P G+
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 512 LINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543
N+ ++ + +P I RL++L L+
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 453 YLPSEIPRNIKKLIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGK 511
YL IP ++ L LR L L +E ++P+ L + LE L + E+P G+
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 512 LINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543
N+ ++ + +P I RL++L L+
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 431 GEILEELFRELTSLRALDFPS---LYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCE 487
G + +F LT L LD + LPS + +L+HL+ L + K+ +LP +
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV---FDRLVHLKELFMCCNKLTELPRGIER 133
Query: 488 LYNLEKLDICSCSCLKELPEG 508
L +L L + + LK +P G
Sbjct: 134 LTHLTHLAL-DQNQLKSIPHG 153
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 464 KLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSC--SCLKELPEGI-GKLINMKYLLN 520
KL L L+LS +I+ LP+ + + L KL I + L+ LP G+ KL +K L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLHENKLQSLPNGVFDKLTQLKELA- 106
Query: 521 RDTDSVRYMPVGI-ARLKSLRTL 542
DT+ ++ +P GI RL SL+ +
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 43 LLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE 79
L E E +KG +I IVG GIGKTT ++ +E
Sbjct: 358 LEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEE 393
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 43 LLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE 79
L E E +KG +I IVG GIGKTT ++ +E
Sbjct: 372 LEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEE 407
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 59 IVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103
+V + + + Q+ +HD++ + +KIL +CV E D + A+
Sbjct: 14 LVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAE 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,766,136
Number of Sequences: 62578
Number of extensions: 705534
Number of successful extensions: 2150
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2123
Number of HSP's gapped (non-prelim): 50
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)