Query 006588
Match_columns 639
No_of_seqs 260 out of 3997
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 11:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-60 3E-65 527.9 37.4 551 30-609 161-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-50 4.4E-55 471.6 37.5 483 21-543 178-710 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-39 4.3E-44 326.0 12.4 278 32-316 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.2E-18 2.5E-23 204.7 12.0 222 390-639 70-315 (968)
5 PLN00113 leucine-rich repeat r 99.8 1E-18 2.2E-23 205.2 10.5 202 389-607 164-367 (968)
6 KOG0444 Cytoskeletal regulator 99.7 2.8E-19 6.1E-24 181.0 -3.4 250 371-638 37-297 (1255)
7 PRK04841 transcriptional regul 99.7 1.2E-14 2.5E-19 170.1 25.4 297 22-366 9-332 (903)
8 COG2909 MalT ATP-dependent tra 99.6 3.1E-14 6.6E-19 151.3 21.7 306 18-368 10-340 (894)
9 PRK00411 cdc6 cell division co 99.6 2.4E-13 5.3E-18 142.9 26.6 320 22-356 25-375 (394)
10 KOG0444 Cytoskeletal regulator 99.6 6.6E-17 1.4E-21 164.1 -3.4 215 375-609 112-352 (1255)
11 TIGR02928 orc1/cdc6 family rep 99.5 4.5E-12 9.9E-17 131.9 26.6 306 22-343 10-352 (365)
12 KOG4194 Membrane glycoprotein 99.5 1.5E-15 3.3E-20 153.4 -0.0 205 390-608 174-404 (873)
13 KOG0472 Leucine-rich repeat pr 99.5 1.2E-15 2.5E-20 147.7 -1.8 77 391-476 230-307 (565)
14 KOG0617 Ras suppressor protein 99.5 2.8E-16 6.1E-21 134.6 -5.4 162 407-582 28-190 (264)
15 KOG4194 Membrane glycoprotein 99.5 1.9E-14 4.2E-19 145.5 5.9 203 390-609 126-330 (873)
16 PLN03210 Resistant to P. syrin 99.4 2.7E-13 5.9E-18 159.9 11.6 181 390-583 612-820 (1153)
17 PF01637 Arch_ATPase: Archaeal 99.4 6E-13 1.3E-17 129.4 11.1 195 29-236 1-234 (234)
18 KOG0472 Leucine-rich repeat pr 99.4 2.1E-15 4.6E-20 145.9 -6.4 197 390-609 69-288 (565)
19 KOG0617 Ras suppressor protein 99.4 4.4E-15 9.6E-20 127.3 -4.5 145 389-543 33-179 (264)
20 COG3899 Predicted ATPase [Gene 99.4 4E-12 8.6E-17 143.2 17.3 314 28-365 1-385 (849)
21 TIGR03015 pepcterm_ATPase puta 99.3 8.8E-11 1.9E-15 116.7 19.4 182 53-240 42-242 (269)
22 PRK00080 ruvB Holliday junctio 99.3 6.2E-11 1.3E-15 120.7 17.4 267 22-340 20-309 (328)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-12 3.4E-17 132.9 3.3 207 390-609 52-291 (319)
24 TIGR00635 ruvB Holliday juncti 99.3 1.2E-10 2.5E-15 118.0 16.7 262 27-340 4-288 (305)
25 KOG0618 Serine/threonine phosp 99.3 5.1E-13 1.1E-17 142.5 -1.8 176 386-577 238-464 (1081)
26 PTZ00112 origin recognition co 99.2 1.4E-09 3.1E-14 117.1 23.4 257 24-291 752-1031(1164)
27 COG1474 CDC6 Cdc6-related prot 99.2 3.8E-09 8.3E-14 107.4 23.8 307 22-343 12-336 (366)
28 PF05729 NACHT: NACHT domain 99.2 2.1E-10 4.6E-15 104.9 12.3 144 55-203 1-163 (166)
29 KOG4237 Extracellular matrix p 99.2 4.2E-12 9.2E-17 123.2 -0.6 144 373-524 51-199 (498)
30 PRK15370 E3 ubiquitin-protein 99.2 1.2E-10 2.6E-15 128.9 10.7 162 387-577 197-358 (754)
31 PRK15370 E3 ubiquitin-protein 99.1 5.9E-11 1.3E-15 131.3 7.3 190 389-609 220-428 (754)
32 cd00116 LRR_RI Leucine-rich re 99.1 2.2E-11 4.8E-16 124.4 3.6 186 391-577 25-233 (319)
33 KOG0618 Serine/threonine phosp 99.1 3.6E-12 7.8E-17 136.2 -3.5 218 369-606 267-510 (1081)
34 PRK07003 DNA polymerase III su 99.1 8.5E-09 1.8E-13 110.8 20.1 199 23-237 12-222 (830)
35 PRK15387 E3 ubiquitin-protein 99.1 7E-10 1.5E-14 122.2 12.1 119 388-531 241-359 (788)
36 KOG3207 Beta-tubulin folding c 99.1 3.1E-11 6.8E-16 118.9 0.8 209 386-608 118-338 (505)
37 COG2256 MGS1 ATPase related to 99.0 1.4E-09 3E-14 106.9 11.4 172 27-231 24-207 (436)
38 PRK14961 DNA polymerase III su 99.0 1.6E-08 3.4E-13 104.2 17.9 194 23-232 12-216 (363)
39 PRK14949 DNA polymerase III su 99.0 7.6E-09 1.7E-13 113.4 15.8 196 23-234 12-218 (944)
40 PF13401 AAA_22: AAA domain; P 99.0 6.7E-10 1.4E-14 97.1 5.9 118 53-172 3-125 (131)
41 PF05496 RuvB_N: Holliday junc 99.0 8.6E-09 1.9E-13 94.9 13.2 188 20-240 17-225 (233)
42 PRK12402 replication factor C 99.0 9.8E-09 2.1E-13 105.7 15.4 203 22-236 10-226 (337)
43 PRK14960 DNA polymerase III su 99.0 1.2E-08 2.7E-13 108.5 16.1 195 23-233 11-216 (702)
44 PRK06893 DNA replication initi 99.0 1.4E-08 3E-13 97.6 15.0 157 53-240 38-207 (229)
45 PRK15387 E3 ubiquitin-protein 99.0 3.8E-09 8.2E-14 116.5 12.5 197 370-610 246-459 (788)
46 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.6E-08 3.5E-13 97.6 15.4 179 25-240 13-205 (226)
47 PRK12323 DNA polymerase III su 99.0 1E-08 2.2E-13 108.8 14.7 200 23-233 12-222 (700)
48 KOG4237 Extracellular matrix p 99.0 7.4E-11 1.6E-15 114.7 -1.2 135 400-543 57-194 (498)
49 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.3E-16 124.7 -6.2 172 390-578 76-247 (722)
50 KOG3207 Beta-tubulin folding c 99.0 1.9E-10 4.2E-15 113.4 1.5 211 408-638 117-332 (505)
51 KOG0532 Leucine-rich repeat (L 98.9 3.5E-11 7.5E-16 122.2 -5.0 173 411-608 74-246 (722)
52 PRK13342 recombination factor 98.9 6.1E-08 1.3E-12 101.9 17.4 181 24-238 9-198 (413)
53 PTZ00202 tuzin; Provisional 98.9 2.5E-07 5.3E-12 93.1 20.4 170 20-202 255-433 (550)
54 PF13191 AAA_16: AAA ATPase do 98.9 3.3E-09 7.1E-14 98.9 6.9 63 28-95 1-63 (185)
55 PRK08691 DNA polymerase III su 98.9 3.4E-08 7.3E-13 106.2 14.9 198 23-236 12-221 (709)
56 PRK14963 DNA polymerase III su 98.9 6.6E-08 1.4E-12 102.8 17.1 200 24-233 11-214 (504)
57 PRK14964 DNA polymerase III su 98.9 7.1E-08 1.5E-12 101.2 17.0 183 23-231 9-212 (491)
58 PRK04195 replication factor C 98.9 3.4E-07 7.3E-12 98.2 22.6 252 22-315 9-271 (482)
59 PRK14957 DNA polymerase III su 98.9 7.2E-08 1.6E-12 102.7 17.0 188 23-237 12-222 (546)
60 PRK00440 rfc replication facto 98.9 6.8E-08 1.5E-12 98.6 16.3 184 23-233 13-200 (319)
61 PRK06645 DNA polymerase III su 98.9 9.5E-08 2.1E-12 101.1 17.6 197 22-231 16-224 (507)
62 PRK14962 DNA polymerase III su 98.9 1.1E-07 2.5E-12 100.2 18.0 205 22-253 9-239 (472)
63 TIGR02397 dnaX_nterm DNA polym 98.8 1.3E-07 2.8E-12 98.0 18.3 188 23-237 10-219 (355)
64 PRK14956 DNA polymerase III su 98.8 3.7E-08 7.9E-13 102.1 13.7 194 22-231 13-217 (484)
65 PRK07471 DNA polymerase III su 98.8 1.1E-07 2.5E-12 97.0 17.2 200 22-236 14-238 (365)
66 PRK07994 DNA polymerase III su 98.8 6.1E-08 1.3E-12 104.8 15.9 195 23-233 12-217 (647)
67 PRK05896 DNA polymerase III su 98.8 8.4E-08 1.8E-12 102.2 16.0 201 22-238 11-223 (605)
68 PLN03025 replication factor C 98.8 6E-08 1.3E-12 98.4 14.4 187 22-233 8-197 (319)
69 PF14516 AAA_35: AAA-like doma 98.8 1.4E-06 3.1E-11 88.5 23.9 208 19-243 3-246 (331)
70 PRK14951 DNA polymerase III su 98.8 1E-07 2.2E-12 102.9 16.2 198 23-233 12-222 (618)
71 cd00009 AAA The AAA+ (ATPases 98.8 3.3E-08 7.2E-13 88.2 10.5 124 30-173 1-130 (151)
72 PRK05564 DNA polymerase III su 98.8 8.9E-08 1.9E-12 96.9 14.6 178 27-234 4-188 (313)
73 PRK14958 DNA polymerase III su 98.8 1.1E-07 2.4E-12 101.4 15.8 185 23-233 12-217 (509)
74 PRK08727 hypothetical protein; 98.8 2.7E-07 5.9E-12 88.8 17.0 173 24-233 16-201 (233)
75 PRK07940 DNA polymerase III su 98.8 1.2E-07 2.5E-12 97.7 15.2 190 27-233 5-210 (394)
76 TIGR00678 holB DNA polymerase 98.8 2.1E-07 4.5E-12 86.8 15.5 162 38-231 3-186 (188)
77 PRK14969 DNA polymerase III su 98.8 1E-07 2.3E-12 102.3 14.9 198 24-237 13-222 (527)
78 PRK09112 DNA polymerase III su 98.8 1.8E-07 3.9E-12 95.0 15.5 198 22-236 18-240 (351)
79 PRK08903 DnaA regulatory inact 98.8 1.9E-07 4.1E-12 90.0 15.0 177 24-240 15-203 (227)
80 PRK09111 DNA polymerase III su 98.7 2.2E-07 4.8E-12 100.6 16.2 199 23-234 20-231 (598)
81 PRK14955 DNA polymerase III su 98.7 1.5E-07 3.2E-12 98.2 14.5 202 23-233 12-225 (397)
82 PRK14952 DNA polymerase III su 98.7 4.7E-07 1E-11 97.5 17.5 201 23-239 9-223 (584)
83 PRK14959 DNA polymerase III su 98.7 3.1E-07 6.7E-12 98.5 15.5 203 22-240 11-225 (624)
84 PF05621 TniB: Bacterial TniB 98.7 2E-07 4.3E-12 90.2 12.5 212 21-236 28-261 (302)
85 PRK08084 DNA replication initi 98.7 8.3E-07 1.8E-11 85.6 16.7 177 27-240 22-213 (235)
86 KOG2028 ATPase related to the 98.7 1.6E-07 3.4E-12 90.9 11.3 177 27-231 138-331 (554)
87 PLN03150 hypothetical protein; 98.7 4.2E-08 9E-13 108.3 8.5 93 443-535 419-512 (623)
88 COG4886 Leucine-rich repeat (L 98.7 1.7E-08 3.7E-13 106.3 5.2 174 389-578 116-290 (394)
89 PF14580 LRR_9: Leucine-rich r 98.7 1.3E-08 2.8E-13 92.0 3.6 106 409-525 16-125 (175)
90 PF13173 AAA_14: AAA domain 98.7 1E-07 2.2E-12 82.6 9.1 120 54-195 2-127 (128)
91 PRK05642 DNA replication initi 98.7 8.3E-07 1.8E-11 85.5 16.3 156 54-240 45-212 (234)
92 PRK07764 DNA polymerase III su 98.7 4.5E-07 9.7E-12 101.5 16.3 193 23-231 11-216 (824)
93 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.3E-13 106.7 4.4 193 393-609 97-290 (394)
94 PLN03150 hypothetical protein; 98.7 5E-08 1.1E-12 107.7 8.4 111 414-530 420-532 (623)
95 PRK08451 DNA polymerase III su 98.7 9.7E-07 2.1E-11 93.6 17.6 198 23-236 10-218 (535)
96 PRK07133 DNA polymerase III su 98.7 6.7E-07 1.4E-11 97.4 16.7 196 23-236 14-220 (725)
97 PRK14953 DNA polymerase III su 98.6 1.2E-06 2.6E-11 93.0 18.0 187 23-236 12-220 (486)
98 PRK14950 DNA polymerase III su 98.6 5.5E-07 1.2E-11 98.6 15.8 199 23-236 12-221 (585)
99 PRK14970 DNA polymerase III su 98.6 1E-06 2.2E-11 91.6 16.8 185 23-233 13-206 (367)
100 KOG0989 Replication factor C, 98.6 1.6E-07 3.5E-12 89.3 9.6 193 17-230 26-224 (346)
101 PF14580 LRR_9: Leucine-rich r 98.6 3.9E-08 8.5E-13 88.8 5.1 122 389-521 19-148 (175)
102 PRK14954 DNA polymerase III su 98.6 9E-07 2E-11 96.0 16.4 200 23-231 12-223 (620)
103 KOG1259 Nischarin, modulator o 98.6 6.9E-09 1.5E-13 97.5 0.2 135 440-582 282-416 (490)
104 PRK14965 DNA polymerase III su 98.6 2.8E-06 6.1E-11 92.5 20.2 200 23-238 12-223 (576)
105 PRK06305 DNA polymerase III su 98.6 1.1E-06 2.4E-11 92.7 16.3 197 24-236 14-223 (451)
106 PRK09087 hypothetical protein; 98.6 1E-06 2.3E-11 84.0 14.6 146 54-240 44-199 (226)
107 PRK14971 DNA polymerase III su 98.6 1.4E-06 3.1E-11 95.1 17.4 193 24-231 14-217 (614)
108 PRK05563 DNA polymerase III su 98.6 1.9E-06 4.1E-11 93.4 18.2 195 22-232 11-216 (559)
109 TIGR01242 26Sp45 26S proteasom 98.6 2.2E-07 4.8E-12 96.1 10.6 185 21-230 116-328 (364)
110 PHA02544 44 clamp loader, smal 98.6 2E-06 4.2E-11 87.6 16.7 160 15-201 9-171 (316)
111 PRK13341 recombination factor 98.6 6.5E-07 1.4E-11 99.0 14.0 177 23-232 24-213 (725)
112 KOG2227 Pre-initiation complex 98.6 2.1E-06 4.6E-11 86.3 15.7 179 24-204 147-339 (529)
113 KOG1259 Nischarin, modulator o 98.5 8.4E-09 1.8E-13 97.0 -1.3 131 385-526 280-412 (490)
114 PRK14948 DNA polymerase III su 98.5 2.4E-06 5.1E-11 93.3 17.2 199 24-236 13-222 (620)
115 PF00308 Bac_DnaA: Bacterial d 98.5 2.5E-06 5.4E-11 81.1 15.4 189 26-239 7-211 (219)
116 PRK06647 DNA polymerase III su 98.5 2.6E-06 5.6E-11 92.0 17.2 195 23-233 12-217 (563)
117 PRK03992 proteasome-activating 98.5 5.9E-07 1.3E-11 93.3 11.5 183 23-230 127-337 (389)
118 KOG4658 Apoptotic ATPase [Sign 98.5 3.5E-08 7.5E-13 111.4 2.5 154 408-575 519-675 (889)
119 KOG2543 Origin recognition com 98.5 4.9E-06 1.1E-10 81.7 16.6 171 25-203 4-193 (438)
120 TIGR03345 VI_ClpV1 type VI sec 98.5 1.5E-06 3.2E-11 98.7 13.9 184 23-230 183-390 (852)
121 COG3903 Predicted ATPase [Gene 98.5 2.2E-07 4.8E-12 92.4 6.1 292 53-366 13-314 (414)
122 PRK14087 dnaA chromosomal repl 98.5 4.3E-06 9.2E-11 88.3 15.9 170 55-240 142-323 (450)
123 PRK07399 DNA polymerase III su 98.4 1.4E-05 2.9E-10 80.2 16.8 196 27-236 4-221 (314)
124 PF05673 DUF815: Protein of un 98.4 8.5E-06 1.8E-10 76.5 14.1 133 15-174 15-152 (249)
125 TIGR02639 ClpA ATP-dependent C 98.4 2.1E-06 4.5E-11 96.8 11.7 155 27-203 182-358 (731)
126 CHL00095 clpC Clp protease ATP 98.4 1.9E-06 4.2E-11 98.2 11.4 155 27-202 179-353 (821)
127 PF13855 LRR_8: Leucine rich r 98.4 4E-07 8.7E-12 67.3 3.9 58 467-524 2-60 (61)
128 COG2255 RuvB Holliday junction 98.3 5.6E-06 1.2E-10 78.1 11.8 180 20-232 19-219 (332)
129 TIGR02903 spore_lon_C ATP-depe 98.3 1.3E-05 2.8E-10 88.0 16.8 48 24-77 151-198 (615)
130 PRK05707 DNA polymerase III su 98.3 1E-05 2.2E-10 81.6 14.4 169 53-236 21-203 (328)
131 KOG1909 Ran GTPase-activating 98.3 1.3E-07 2.8E-12 91.3 0.2 41 439-479 89-133 (382)
132 TIGR00362 DnaA chromosomal rep 98.3 3.3E-05 7.2E-10 81.3 17.9 162 54-237 136-311 (405)
133 PF13855 LRR_8: Leucine rich r 98.3 6.5E-07 1.4E-11 66.2 3.6 59 442-500 1-60 (61)
134 PRK14088 dnaA chromosomal repl 98.3 2.4E-05 5.1E-10 82.6 16.4 162 55-237 131-306 (440)
135 PRK08769 DNA polymerase III su 98.3 1.9E-05 4.2E-10 78.8 14.9 176 34-236 11-208 (319)
136 PRK06620 hypothetical protein; 98.3 1.5E-05 3.4E-10 75.3 13.6 138 55-236 45-189 (214)
137 PRK00149 dnaA chromosomal repl 98.3 2.9E-05 6.3E-10 82.8 16.9 161 54-236 148-322 (450)
138 TIGR02881 spore_V_K stage V sp 98.3 1.7E-05 3.7E-10 78.1 14.0 162 28-205 7-193 (261)
139 TIGR03346 chaperone_ClpB ATP-d 98.2 5.9E-06 1.3E-10 94.6 11.8 154 27-203 173-349 (852)
140 PF00004 AAA: ATPase family as 98.2 2.4E-06 5.2E-11 74.6 6.5 96 57-172 1-111 (132)
141 PF13177 DNA_pol3_delta2: DNA 98.2 1.3E-05 2.9E-10 72.3 11.3 138 31-190 1-161 (162)
142 PRK08058 DNA polymerase III su 98.2 1.7E-05 3.7E-10 80.5 13.2 163 28-202 6-181 (329)
143 CHL00181 cbbX CbbX; Provisiona 98.2 6.3E-05 1.4E-09 74.6 16.8 136 54-205 59-211 (287)
144 PTZ00454 26S protease regulato 98.2 1.2E-05 2.6E-10 83.2 11.9 184 22-230 140-351 (398)
145 COG3267 ExeA Type II secretory 98.2 7.5E-05 1.6E-09 69.9 15.5 183 51-240 48-249 (269)
146 TIGR03689 pup_AAA proteasome A 98.2 2.5E-05 5.4E-10 82.6 14.0 169 24-204 179-379 (512)
147 PRK12422 chromosomal replicati 98.2 4.4E-05 9.5E-10 80.4 15.8 155 54-230 141-307 (445)
148 KOG1909 Ran GTPase-activating 98.2 1.7E-07 3.7E-12 90.5 -2.1 198 406-608 86-310 (382)
149 COG1222 RPT1 ATP-dependent 26S 98.2 1.5E-05 3.3E-10 77.7 10.8 178 27-230 151-357 (406)
150 PRK14086 dnaA chromosomal repl 98.2 0.0001 2.2E-09 79.1 17.9 163 55-237 315-489 (617)
151 PRK11034 clpA ATP-dependent Cl 98.2 8.2E-06 1.8E-10 90.9 10.1 157 27-203 186-362 (758)
152 PRK06871 DNA polymerase III su 98.1 8.3E-05 1.8E-09 74.4 16.0 176 35-231 10-198 (325)
153 PTZ00361 26 proteosome regulat 98.1 1.3E-05 2.7E-10 83.6 10.6 182 25-231 181-390 (438)
154 PRK10865 protein disaggregatio 98.1 1.8E-05 3.9E-10 90.3 12.6 156 26-203 177-354 (857)
155 TIGR02880 cbbX_cfxQ probable R 98.1 9E-05 2E-09 73.5 16.1 161 28-204 23-209 (284)
156 cd01128 rho_factor Transcripti 98.1 4.5E-06 9.7E-11 80.4 6.4 91 53-144 15-114 (249)
157 TIGR00602 rad24 checkpoint pro 98.1 2.7E-05 5.8E-10 84.7 12.0 61 16-77 73-133 (637)
158 KOG1514 Origin recognition com 98.1 0.00013 2.9E-09 77.3 16.3 176 25-204 394-590 (767)
159 PRK11331 5-methylcytosine-spec 98.1 9.4E-06 2E-10 83.5 7.7 111 26-148 174-287 (459)
160 PRK06090 DNA polymerase III su 98.1 0.00017 3.7E-09 72.0 16.3 176 35-236 11-201 (319)
161 PRK07993 DNA polymerase III su 98.0 9.9E-05 2.2E-09 74.7 14.6 177 35-232 10-200 (334)
162 TIGR01241 FtsH_fam ATP-depende 98.0 5.1E-05 1.1E-09 81.9 13.2 185 21-230 49-260 (495)
163 COG0593 DnaA ATPase involved i 98.0 9.5E-05 2.1E-09 75.4 14.2 138 53-209 112-263 (408)
164 PRK09376 rho transcription ter 98.0 1.2E-05 2.6E-10 80.9 7.4 104 35-144 155-267 (416)
165 KOG0991 Replication factor C, 98.0 1.7E-05 3.7E-10 72.4 7.1 164 17-201 17-183 (333)
166 COG2812 DnaX DNA polymerase II 98.0 2.5E-05 5.3E-10 82.1 9.2 190 23-228 12-212 (515)
167 PF10443 RNA12: RNA12 protein; 98.0 0.0005 1.1E-08 69.9 18.1 206 32-249 1-291 (431)
168 PRK08116 hypothetical protein; 98.0 2.3E-05 4.9E-10 76.9 8.3 103 55-172 115-220 (268)
169 CHL00176 ftsH cell division pr 98.0 8.6E-05 1.9E-09 81.4 13.4 180 24-228 180-386 (638)
170 smart00382 AAA ATPases associa 97.9 4.1E-05 8.8E-10 67.4 8.8 90 55-148 3-93 (148)
171 PF07693 KAP_NTPase: KAP famil 97.9 0.00044 9.5E-09 70.7 17.0 168 32-202 1-262 (325)
172 KOG0531 Protein phosphatase 1, 97.9 1.6E-06 3.5E-11 91.6 -1.3 193 390-609 73-268 (414)
173 KOG4579 Leucine-rich repeat (L 97.9 5.7E-06 1.2E-10 69.3 2.2 92 438-532 49-141 (177)
174 PRK08181 transposase; Validate 97.9 6.6E-05 1.4E-09 73.2 10.0 102 54-173 106-209 (269)
175 PLN00020 ribulose bisphosphate 97.9 0.00023 4.9E-09 70.9 13.6 157 51-231 145-333 (413)
176 PRK10536 hypothetical protein; 97.9 7.9E-05 1.7E-09 71.0 9.8 135 27-173 55-213 (262)
177 COG0470 HolB ATPase involved i 97.8 0.00014 3E-09 74.5 11.9 142 28-189 2-167 (325)
178 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00035 7.7E-09 72.9 14.4 182 24-230 187-396 (802)
179 COG0466 Lon ATP-dependent Lon 97.8 7.7E-05 1.7E-09 79.4 9.7 172 20-203 316-508 (782)
180 TIGR00767 rho transcription te 97.8 6E-05 1.3E-09 76.4 8.4 91 53-144 167-266 (415)
181 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00039 8.5E-09 68.3 14.1 154 34-203 9-198 (262)
182 PRK12377 putative replication 97.8 3.6E-05 7.8E-10 74.1 6.5 102 54-172 101-205 (248)
183 PF01695 IstB_IS21: IstB-like 97.8 2.8E-05 6E-10 71.3 5.1 102 53-172 46-149 (178)
184 KOG2004 Mitochondrial ATP-depe 97.8 0.00013 2.9E-09 77.3 10.4 173 20-204 404-597 (906)
185 PF02562 PhoH: PhoH-like prote 97.8 0.0001 2.3E-09 68.3 8.5 130 31-172 4-155 (205)
186 PF12799 LRR_4: Leucine Rich r 97.8 3.1E-05 6.7E-10 52.4 3.7 34 467-500 2-35 (44)
187 PRK06964 DNA polymerase III su 97.8 0.0009 1.9E-08 67.6 15.8 91 132-234 131-223 (342)
188 TIGR01243 CDC48 AAA family ATP 97.8 0.00028 6E-09 80.1 13.5 182 24-230 450-657 (733)
189 PRK07952 DNA replication prote 97.8 0.00018 3.9E-09 69.1 10.1 118 35-172 84-204 (244)
190 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00032 6.9E-09 74.5 12.5 181 26-230 227-429 (489)
191 TIGR00763 lon ATP-dependent pr 97.7 0.00028 6E-09 80.3 12.6 167 25-203 318-505 (775)
192 KOG4579 Leucine-rich repeat (L 97.7 6.5E-06 1.4E-10 68.9 -0.4 97 432-530 67-163 (177)
193 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.6E-10 88.9 1.3 137 441-607 121-261 (699)
194 TIGR02639 ClpA ATP-dependent C 97.7 0.00035 7.5E-09 79.1 13.0 134 26-171 453-602 (731)
195 PRK10865 protein disaggregatio 97.7 0.0003 6.4E-09 80.5 12.5 136 27-172 568-720 (857)
196 KOG0531 Protein phosphatase 1, 97.7 6.4E-06 1.4E-10 87.0 -0.9 173 386-577 92-267 (414)
197 PRK08939 primosomal protein Dn 97.7 0.0002 4.4E-09 71.5 9.8 122 31-172 135-260 (306)
198 KOG0730 AAA+-type ATPase [Post 97.7 0.00039 8.4E-09 73.5 12.0 196 11-231 418-638 (693)
199 PRK09183 transposase/IS protei 97.7 0.00026 5.6E-09 69.2 10.1 102 53-172 101-205 (259)
200 PF12799 LRR_4: Leucine Rich r 97.7 4.9E-05 1.1E-09 51.4 3.5 40 442-482 1-40 (44)
201 KOG1969 DNA replication checkp 97.7 8.5E-05 1.8E-09 79.0 6.9 90 51-158 323-412 (877)
202 TIGR01243 CDC48 AAA family ATP 97.7 0.00029 6.2E-09 80.0 11.7 184 24-232 175-383 (733)
203 PRK04132 replication factor C 97.7 0.00087 1.9E-08 75.2 15.0 155 59-233 569-728 (846)
204 PRK06526 transposase; Provisio 97.7 4.3E-05 9.3E-10 74.2 4.2 102 53-173 97-201 (254)
205 KOG2120 SCF ubiquitin ligase, 97.7 3.7E-06 8E-11 79.6 -3.0 175 389-575 185-373 (419)
206 PRK04296 thymidine kinase; Pro 97.6 0.00012 2.6E-09 68.1 6.7 113 55-174 3-117 (190)
207 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00012 2.5E-09 83.6 7.9 137 27-172 566-718 (852)
208 TIGR02902 spore_lonB ATP-depen 97.6 0.00021 4.6E-09 77.3 9.6 172 24-204 62-277 (531)
209 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00022 4.8E-09 81.9 10.0 138 26-172 564-717 (852)
210 COG1373 Predicted ATPase (AAA+ 97.6 0.00098 2.1E-08 69.4 13.9 166 30-235 20-191 (398)
211 KOG1859 Leucine-rich repeat pr 97.6 1E-06 2.2E-11 92.8 -8.2 22 405-426 102-123 (1096)
212 KOG0735 AAA+-type ATPase [Post 97.6 0.00062 1.3E-08 72.3 11.9 164 53-238 430-618 (952)
213 PRK13531 regulatory ATPase Rav 97.6 0.00032 7E-09 73.0 9.7 157 26-202 19-193 (498)
214 KOG0731 AAA+-type ATPase conta 97.6 0.00066 1.4E-08 74.0 12.4 185 24-232 308-520 (774)
215 PRK08699 DNA polymerase III su 97.6 0.001 2.2E-08 67.2 13.1 70 133-202 113-184 (325)
216 KOG2228 Origin recognition com 97.6 0.0008 1.7E-08 65.4 11.5 173 26-203 23-219 (408)
217 PRK10787 DNA-binding ATP-depen 97.6 0.00044 9.5E-09 78.0 11.5 185 7-203 300-506 (784)
218 PRK11034 clpA ATP-dependent Cl 97.6 0.00051 1.1E-08 76.8 11.8 133 27-171 458-606 (758)
219 COG1223 Predicted ATPase (AAA+ 97.6 0.00066 1.4E-08 63.4 10.5 182 24-230 118-319 (368)
220 PRK06921 hypothetical protein; 97.6 0.00037 8.1E-09 68.3 9.4 100 53-172 116-224 (266)
221 COG2607 Predicted ATPase (AAA+ 97.5 0.0022 4.8E-08 59.5 13.3 110 22-158 55-165 (287)
222 PRK12608 transcription termina 97.5 0.0006 1.3E-08 68.8 10.6 103 34-143 118-230 (380)
223 CHL00095 clpC Clp protease ATP 97.5 0.00026 5.7E-09 81.0 9.1 138 26-172 508-661 (821)
224 COG0542 clpA ATP-binding subun 97.5 0.0014 3.1E-08 72.0 13.9 155 27-202 170-345 (786)
225 KOG2982 Uncharacterized conser 97.5 3.5E-05 7.6E-10 73.1 1.5 83 441-523 70-156 (418)
226 COG1484 DnaC DNA replication p 97.5 0.00022 4.9E-09 69.2 7.0 102 53-172 104-208 (254)
227 PRK09361 radB DNA repair and r 97.5 0.0005 1.1E-08 66.1 9.5 56 37-99 10-65 (225)
228 cd01394 radB RadB. The archaea 97.5 0.00054 1.2E-08 65.5 9.6 56 36-97 5-60 (218)
229 PRK07132 DNA polymerase III su 97.5 0.0032 6.9E-08 62.5 15.2 169 36-235 5-184 (299)
230 KOG0741 AAA+-type ATPase [Post 97.5 0.0021 4.7E-08 66.1 13.8 133 51-202 535-685 (744)
231 PRK06835 DNA replication prote 97.5 0.00028 6E-09 71.1 7.6 102 55-172 184-288 (329)
232 TIGR02237 recomb_radB DNA repa 97.5 0.00046 1E-08 65.5 8.7 46 53-101 11-56 (209)
233 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.00072 1.6E-08 60.0 9.0 116 55-173 3-138 (159)
234 TIGR01650 PD_CobS cobaltochela 97.5 0.0016 3.6E-08 64.6 12.4 163 24-203 42-233 (327)
235 PF04665 Pox_A32: Poxvirus A32 97.5 0.00042 9.1E-09 65.8 7.9 37 54-92 13-49 (241)
236 PF14532 Sigma54_activ_2: Sigm 97.5 8.7E-05 1.9E-09 65.2 3.1 108 30-172 1-109 (138)
237 KOG1859 Leucine-rich repeat pr 97.4 1E-05 2.2E-10 85.4 -3.4 125 467-606 165-289 (1096)
238 PF00158 Sigma54_activat: Sigm 97.4 0.00023 4.9E-09 64.5 5.6 132 29-172 1-143 (168)
239 COG0542 clpA ATP-binding subun 97.4 0.00033 7.2E-09 76.8 7.2 136 27-172 491-643 (786)
240 KOG2120 SCF ubiquitin ligase, 97.4 5.5E-06 1.2E-10 78.5 -5.6 181 413-607 186-374 (419)
241 PF07728 AAA_5: AAA domain (dy 97.4 6.3E-05 1.4E-09 66.2 1.3 88 57-157 2-89 (139)
242 PRK11889 flhF flagellar biosyn 97.4 0.0015 3.1E-08 66.2 10.8 114 53-168 240-357 (436)
243 KOG0744 AAA+-type ATPase [Post 97.4 0.00038 8.2E-09 67.1 6.3 81 53-143 176-260 (423)
244 PTZ00494 tuzin-like protein; P 97.3 0.022 4.8E-07 58.0 18.3 169 21-202 365-543 (664)
245 KOG0743 AAA+-type ATPase [Post 97.3 0.0035 7.6E-08 63.8 12.9 151 55-240 236-413 (457)
246 TIGR02012 tigrfam_recA protein 97.3 0.00088 1.9E-08 66.8 8.6 96 37-143 41-143 (321)
247 PRK15386 type III secretion pr 97.3 0.00031 6.6E-09 71.7 5.4 126 389-543 52-183 (426)
248 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0028 6E-08 66.5 12.2 158 28-205 512-694 (802)
249 cd00983 recA RecA is a bacter 97.3 0.00088 1.9E-08 66.8 8.4 97 36-143 40-143 (325)
250 cd01120 RecA-like_NTPases RecA 97.3 0.0012 2.5E-08 59.8 8.8 40 56-97 1-40 (165)
251 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00024 5.1E-09 71.3 4.3 51 28-78 52-102 (361)
252 PRK15386 type III secretion pr 97.3 0.00046 1E-08 70.4 6.3 84 438-533 48-134 (426)
253 PRK06067 flagellar accessory p 97.3 0.0014 3E-08 63.5 9.2 128 36-172 11-164 (234)
254 PRK09354 recA recombinase A; P 97.3 0.0012 2.7E-08 66.4 9.0 97 36-143 45-148 (349)
255 cd01393 recA_like RecA is a b 97.2 0.0014 3.1E-08 63.0 9.2 100 37-143 6-124 (226)
256 KOG0735 AAA+-type ATPase [Post 97.2 0.01 2.2E-07 63.5 15.6 182 26-232 666-872 (952)
257 PF07724 AAA_2: AAA domain (Cd 97.2 0.00025 5.5E-09 64.4 3.0 91 53-158 2-104 (171)
258 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.8E-09 79.8 2.1 147 389-543 122-281 (699)
259 KOG0729 26S proteasome regulat 97.2 0.0013 2.7E-08 61.6 7.3 50 27-76 177-233 (435)
260 PRK08118 topology modulation p 97.2 0.00054 1.2E-08 62.1 4.8 34 56-89 3-37 (167)
261 KOG2035 Replication factor C, 97.1 0.0016 3.5E-08 61.5 7.9 183 28-232 14-224 (351)
262 PF08423 Rad51: Rad51; InterP 97.1 0.0013 2.8E-08 64.2 7.6 69 37-110 25-97 (256)
263 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0043 9.3E-08 60.0 11.1 61 36-104 7-67 (237)
264 PRK05541 adenylylsulfate kinas 97.1 0.001 2.2E-08 61.2 6.2 37 53-91 6-42 (176)
265 PRK05917 DNA polymerase III su 97.1 0.01 2.2E-07 58.2 13.3 132 35-190 5-154 (290)
266 COG0464 SpoVK ATPases of the A 97.1 0.0043 9.4E-08 67.3 11.8 160 28-207 243-427 (494)
267 PHA02244 ATPase-like protein 97.1 0.0017 3.7E-08 65.3 7.8 57 16-76 85-141 (383)
268 TIGR02238 recomb_DMC1 meiotic 97.1 0.0024 5.2E-08 64.1 8.9 71 36-111 82-156 (313)
269 KOG0734 AAA+-type ATPase conta 97.1 0.0097 2.1E-07 61.5 13.0 160 24-203 301-484 (752)
270 KOG1051 Chaperone HSP104 and r 97.0 0.0028 6E-08 70.8 9.9 119 28-159 563-686 (898)
271 TIGR00708 cobA cob(I)alamin ad 97.0 0.004 8.7E-08 55.9 9.1 119 53-173 4-140 (173)
272 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0026 5.5E-08 61.6 8.6 66 38-108 7-76 (235)
273 PF03215 Rad17: Rad17 cell cyc 97.0 0.0025 5.4E-08 68.2 9.0 71 16-91 8-78 (519)
274 PRK06696 uridine kinase; Valid 97.0 0.0012 2.6E-08 63.3 6.0 44 31-77 2-45 (223)
275 cd03228 ABCC_MRP_Like The MRP 97.0 0.0036 7.8E-08 57.2 8.9 118 53-177 27-159 (171)
276 PF00448 SRP54: SRP54-type pro 97.0 0.0024 5.2E-08 59.5 7.7 89 54-144 1-94 (196)
277 cd03214 ABC_Iron-Siderophores_ 97.0 0.0041 8.9E-08 57.4 9.2 121 53-176 24-161 (180)
278 PRK07276 DNA polymerase III su 97.0 0.018 3.8E-07 56.8 13.9 154 33-201 8-173 (290)
279 COG1875 NYN ribonuclease and A 97.0 0.0047 1E-07 60.9 9.6 137 29-174 226-389 (436)
280 PRK14974 cell division protein 97.0 0.0085 1.8E-07 60.5 11.8 91 53-145 139-234 (336)
281 PHA00729 NTP-binding motif con 97.0 0.0026 5.7E-08 59.7 7.6 25 53-77 16-40 (226)
282 cd00544 CobU Adenosylcobinamid 97.0 0.001 2.2E-08 60.3 4.7 148 56-231 1-167 (169)
283 TIGR01817 nifA Nif-specific re 97.0 0.0027 5.9E-08 69.5 8.9 136 23-172 192-340 (534)
284 cd01124 KaiC KaiC is a circadi 96.9 0.0027 5.8E-08 59.0 7.5 37 57-95 2-38 (187)
285 PRK04328 hypothetical protein; 96.9 0.0053 1.1E-07 59.8 9.6 53 37-95 10-62 (249)
286 TIGR02974 phageshock_pspF psp 96.9 0.0014 3.1E-08 66.4 5.9 130 29-172 1-143 (329)
287 PRK10733 hflB ATP-dependent me 96.9 0.0061 1.3E-07 67.8 11.2 159 27-205 152-337 (644)
288 PF10236 DAP3: Mitochondrial r 96.9 0.034 7.5E-07 55.9 15.5 49 184-233 258-306 (309)
289 PRK11608 pspF phage shock prot 96.9 0.0019 4.1E-08 65.6 6.6 134 27-172 6-150 (326)
290 CHL00206 ycf2 Ycf2; Provisiona 96.9 0.011 2.3E-07 70.6 13.2 25 53-77 1629-1653(2281)
291 PF13604 AAA_30: AAA domain; P 96.9 0.00093 2E-08 62.4 3.9 109 53-173 17-131 (196)
292 PRK05703 flhF flagellar biosyn 96.9 0.0098 2.1E-07 62.4 11.8 89 54-144 221-310 (424)
293 KOG2982 Uncharacterized conser 96.9 0.00015 3.3E-09 68.9 -1.4 57 547-604 231-287 (418)
294 COG0714 MoxR-like ATPases [Gen 96.9 0.003 6.5E-08 64.5 7.8 111 26-159 23-138 (329)
295 KOG1644 U2-associated snRNP A' 96.9 0.001 2.2E-08 60.0 3.7 36 465-500 63-99 (233)
296 PRK07261 topology modulation p 96.9 0.0019 4.1E-08 58.9 5.6 21 56-76 2-22 (171)
297 cd03247 ABCC_cytochrome_bd The 96.9 0.0036 7.8E-08 57.6 7.6 119 53-177 27-161 (178)
298 COG5238 RNA1 Ran GTPase-activa 96.8 0.00045 9.9E-09 64.9 1.4 187 408-609 26-255 (388)
299 TIGR03499 FlhF flagellar biosy 96.8 0.0083 1.8E-07 59.5 10.4 88 53-142 193-281 (282)
300 PRK12726 flagellar biosynthesi 96.8 0.0074 1.6E-07 61.0 9.9 91 52-144 204-296 (407)
301 PRK14722 flhF flagellar biosyn 96.8 0.004 8.6E-08 63.5 8.2 90 53-144 136-226 (374)
302 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0061 1.3E-07 61.3 9.4 70 36-110 82-155 (316)
303 KOG0728 26S proteasome regulat 96.8 0.016 3.4E-07 54.1 11.0 155 29-203 148-331 (404)
304 PF03969 AFG1_ATPase: AFG1-lik 96.8 0.0025 5.4E-08 65.1 6.6 106 52-171 60-166 (362)
305 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0079 1.7E-07 57.9 9.8 53 37-95 7-59 (229)
306 PRK12723 flagellar biosynthesi 96.8 0.0085 1.8E-07 61.7 10.3 91 53-145 173-266 (388)
307 COG2884 FtsE Predicted ATPase 96.8 0.011 2.5E-07 52.9 9.6 24 53-76 27-50 (223)
308 PRK08533 flagellar accessory p 96.8 0.008 1.7E-07 57.7 9.6 49 53-105 23-71 (230)
309 PRK15429 formate hydrogenlyase 96.8 0.0031 6.8E-08 71.1 7.7 133 26-172 375-520 (686)
310 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.004 8.6E-08 55.0 6.7 105 53-176 25-130 (144)
311 cd01121 Sms Sms (bacterial rad 96.7 0.0062 1.3E-07 62.6 9.0 97 36-144 68-169 (372)
312 PF13207 AAA_17: AAA domain; P 96.7 0.001 2.3E-08 56.8 2.8 21 56-76 1-21 (121)
313 PRK05973 replicative DNA helic 96.7 0.0043 9.2E-08 59.2 7.0 41 53-95 63-103 (237)
314 COG1066 Sms Predicted ATP-depe 96.7 0.0058 1.3E-07 61.4 8.1 99 34-145 77-180 (456)
315 PRK15455 PrkA family serine pr 96.7 0.001 2.2E-08 70.4 2.9 52 26-77 75-126 (644)
316 PRK05022 anaerobic nitric oxid 96.7 0.0026 5.7E-08 68.9 6.1 134 25-172 185-331 (509)
317 cd03216 ABC_Carb_Monos_I This 96.7 0.0039 8.4E-08 56.4 6.3 116 53-175 25-144 (163)
318 COG5238 RNA1 Ran GTPase-activa 96.7 0.0015 3.2E-08 61.6 3.5 210 389-607 30-283 (388)
319 PLN03186 DNA repair protein RA 96.7 0.0084 1.8E-07 60.8 9.2 71 36-111 109-183 (342)
320 KOG2739 Leucine-rich acidic nu 96.7 0.00068 1.5E-08 63.8 1.2 114 458-575 35-153 (260)
321 KOG1644 U2-associated snRNP A' 96.7 0.0017 3.6E-08 58.6 3.6 84 438-522 60-149 (233)
322 PRK05986 cob(I)alamin adenolsy 96.7 0.0085 1.8E-07 54.7 8.2 118 53-173 21-158 (191)
323 KOG0739 AAA+-type ATPase [Post 96.7 0.014 3.1E-07 55.8 9.9 154 52-230 164-335 (439)
324 COG0465 HflB ATP-dependent Zn 96.7 0.014 3.1E-07 62.6 11.1 186 21-231 144-356 (596)
325 cd01122 GP4d_helicase GP4d_hel 96.6 0.015 3.3E-07 57.6 10.8 53 53-108 29-81 (271)
326 TIGR02236 recomb_radA DNA repa 96.6 0.01 2.2E-07 60.1 9.6 69 37-110 82-154 (310)
327 PRK12727 flagellar biosynthesi 96.6 0.0091 2E-07 63.1 9.3 112 31-144 327-439 (559)
328 cd03238 ABC_UvrA The excision 96.6 0.0058 1.3E-07 55.8 7.0 115 53-177 20-153 (176)
329 PLN03187 meiotic recombination 96.6 0.01 2.2E-07 60.1 9.3 70 37-111 113-186 (344)
330 cd03246 ABCC_Protease_Secretio 96.6 0.0079 1.7E-07 55.1 7.9 118 53-177 27-160 (173)
331 PRK11823 DNA repair protein Ra 96.6 0.011 2.3E-07 62.8 9.8 98 35-144 65-167 (446)
332 cd01131 PilT Pilus retraction 96.6 0.0041 8.9E-08 58.3 6.0 108 55-174 2-110 (198)
333 COG1136 SalX ABC-type antimicr 96.6 0.022 4.8E-07 53.5 10.7 55 126-180 153-210 (226)
334 COG0468 RecA RecA/RadA recombi 96.5 0.017 3.6E-07 56.4 9.9 99 38-143 48-151 (279)
335 cd03115 SRP The signal recogni 96.5 0.013 2.9E-07 53.6 8.9 88 56-145 2-94 (173)
336 PRK12724 flagellar biosynthesi 96.5 0.012 2.5E-07 60.6 9.0 85 54-142 223-308 (432)
337 PRK04301 radA DNA repair and r 96.5 0.012 2.5E-07 59.7 9.0 69 37-110 89-161 (317)
338 PRK08233 hypothetical protein; 96.5 0.0064 1.4E-07 56.2 6.6 24 54-77 3-26 (182)
339 PRK00771 signal recognition pa 96.5 0.015 3.2E-07 60.9 9.8 58 53-112 94-152 (437)
340 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0042 9.2E-08 56.7 5.1 110 53-177 24-136 (177)
341 cd00984 DnaB_C DnaB helicase C 96.5 0.029 6.2E-07 54.6 11.3 41 53-94 12-52 (242)
342 PRK13765 ATP-dependent proteas 96.5 0.0027 5.9E-08 69.5 4.4 79 23-111 27-105 (637)
343 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.01 2.2E-07 58.2 8.0 41 53-95 35-75 (259)
344 cd01133 F1-ATPase_beta F1 ATP 96.5 0.014 2.9E-07 56.8 8.7 53 53-107 68-122 (274)
345 COG4608 AppF ABC-type oligopep 96.5 0.013 2.9E-07 56.0 8.5 123 53-178 38-175 (268)
346 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.0098 2.1E-07 56.8 7.5 24 53-76 29-52 (254)
347 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0034 7.4E-08 62.5 4.5 51 26-76 60-110 (358)
348 PTZ00035 Rad51 protein; Provis 96.4 0.018 3.9E-07 58.5 9.7 70 36-110 104-177 (337)
349 KOG0652 26S proteasome regulat 96.4 0.024 5.3E-07 53.1 9.6 50 27-76 171-227 (424)
350 KOG0736 Peroxisome assembly fa 96.4 0.0082 1.8E-07 64.8 7.3 97 28-144 673-775 (953)
351 TIGR00064 ftsY signal recognit 96.4 0.017 3.6E-07 56.9 8.9 92 52-145 70-166 (272)
352 COG1419 FlhF Flagellar GTP-bin 96.4 0.02 4.3E-07 58.1 9.4 90 53-144 202-292 (407)
353 cd03223 ABCD_peroxisomal_ALDP 96.3 0.026 5.5E-07 51.2 9.5 117 53-176 26-151 (166)
354 KOG2123 Uncharacterized conser 96.3 0.00027 5.9E-09 66.6 -3.5 57 465-524 18-74 (388)
355 PF00154 RecA: recA bacterial 96.3 0.0052 1.1E-07 61.2 5.2 97 36-142 38-140 (322)
356 PRK07667 uridine kinase; Provi 96.3 0.008 1.7E-07 56.1 6.2 38 36-77 3-40 (193)
357 PF01583 APS_kinase: Adenylyls 96.3 0.0051 1.1E-07 54.4 4.5 37 54-92 2-38 (156)
358 TIGR00416 sms DNA repair prote 96.3 0.025 5.4E-07 60.0 10.5 98 35-144 79-181 (454)
359 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0096 2.1E-07 54.5 6.5 119 53-177 25-159 (173)
360 cd01125 repA Hexameric Replica 96.3 0.024 5.2E-07 55.0 9.5 143 56-198 3-199 (239)
361 COG4088 Predicted nucleotide k 96.3 0.0098 2.1E-07 53.9 6.1 31 55-87 2-32 (261)
362 PRK05818 DNA polymerase III su 96.3 0.038 8.2E-07 53.1 10.4 129 53-190 6-147 (261)
363 PRK10867 signal recognition pa 96.3 0.018 3.8E-07 60.3 8.9 57 52-110 98-156 (433)
364 PRK13695 putative NTPase; Prov 96.3 0.0076 1.6E-07 55.2 5.7 22 56-77 2-23 (174)
365 PF13479 AAA_24: AAA domain 96.3 0.014 3E-07 55.4 7.5 32 54-95 3-34 (213)
366 PRK10820 DNA-binding transcrip 96.3 0.0072 1.6E-07 65.6 6.2 136 23-172 200-348 (520)
367 PF03308 ArgK: ArgK protein; 96.3 0.0069 1.5E-07 57.6 5.2 65 35-103 14-78 (266)
368 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.0091 2E-07 53.6 5.9 120 53-178 24-145 (157)
369 PRK00889 adenylylsulfate kinas 96.2 0.012 2.6E-07 53.9 6.8 25 53-77 3-27 (175)
370 PRK11388 DNA-binding transcrip 96.2 0.012 2.5E-07 66.1 7.9 132 26-172 324-466 (638)
371 cd02027 APSK Adenosine 5'-phos 96.2 0.013 2.7E-07 52.2 6.5 22 56-77 1-22 (149)
372 cd03245 ABCC_bacteriocin_expor 96.2 0.037 8.1E-07 52.9 10.3 24 53-76 29-52 (220)
373 PRK05800 cobU adenosylcobinami 96.2 0.0079 1.7E-07 54.6 5.2 152 56-233 3-169 (170)
374 PRK13539 cytochrome c biogenes 96.2 0.024 5.2E-07 53.6 8.7 62 128-192 140-203 (207)
375 COG1126 GlnQ ABC-type polar am 96.2 0.034 7.3E-07 51.2 9.0 122 53-177 27-200 (240)
376 KOG0727 26S proteasome regulat 96.2 0.0093 2E-07 55.6 5.5 50 28-77 156-212 (408)
377 TIGR02858 spore_III_AA stage I 96.1 0.055 1.2E-06 53.0 11.1 114 53-176 110-232 (270)
378 PRK09519 recA DNA recombinatio 96.1 0.02 4.4E-07 63.7 9.0 97 36-143 45-148 (790)
379 PRK05439 pantothenate kinase; 96.1 0.042 9E-07 54.7 10.3 26 51-76 83-108 (311)
380 COG1618 Predicted nucleotide k 96.1 0.0066 1.4E-07 52.8 4.0 25 53-77 4-28 (179)
381 TIGR00959 ffh signal recogniti 96.1 0.032 6.8E-07 58.4 9.8 58 53-111 98-156 (428)
382 cd03229 ABC_Class3 This class 96.1 0.015 3.1E-07 53.6 6.6 24 53-76 25-48 (178)
383 COG4133 CcmA ABC-type transpor 96.1 0.055 1.2E-06 48.6 9.6 55 119-173 134-190 (209)
384 TIGR02329 propionate_PrpR prop 96.1 0.0096 2.1E-07 64.1 6.0 132 27-172 212-357 (526)
385 PF00485 PRK: Phosphoribulokin 96.1 0.024 5.2E-07 52.9 8.0 21 56-76 1-21 (194)
386 PF13481 AAA_25: AAA domain; P 96.1 0.022 4.7E-07 53.2 7.7 43 54-96 32-82 (193)
387 PRK06731 flhF flagellar biosyn 96.0 0.035 7.6E-07 54.3 9.2 91 53-145 74-166 (270)
388 TIGR00150 HI0065_YjeE ATPase, 96.0 0.007 1.5E-07 52.0 3.8 40 34-77 6-45 (133)
389 PF00910 RNA_helicase: RNA hel 96.0 0.0055 1.2E-07 50.9 3.2 21 57-77 1-21 (107)
390 COG2842 Uncharacterized ATPase 96.0 0.046 9.9E-07 52.9 9.6 127 20-159 65-191 (297)
391 PLN02348 phosphoribulokinase 96.0 0.077 1.7E-06 54.2 11.7 26 52-77 47-72 (395)
392 PF13238 AAA_18: AAA domain; P 96.0 0.0045 9.8E-08 53.4 2.6 21 57-77 1-21 (129)
393 PRK13540 cytochrome c biogenes 96.0 0.031 6.7E-07 52.5 8.4 25 53-77 26-50 (200)
394 TIGR00554 panK_bact pantothena 96.0 0.029 6.3E-07 55.4 8.4 26 51-76 59-84 (290)
395 PRK05342 clpX ATP-dependent pr 96.0 0.0093 2E-07 62.2 5.2 51 26-76 70-130 (412)
396 KOG2739 Leucine-rich acidic nu 96.0 0.0037 7.9E-08 59.0 2.0 84 439-523 62-153 (260)
397 TIGR00382 clpX endopeptidase C 96.0 0.021 4.6E-07 59.2 7.7 52 25-76 75-138 (413)
398 COG1117 PstB ABC-type phosphat 96.0 0.028 6.1E-07 51.5 7.4 38 29-74 16-53 (253)
399 cd03263 ABC_subfamily_A The AB 96.0 0.036 7.8E-07 52.9 8.9 24 53-76 27-50 (220)
400 cd03244 ABCC_MRP_domain2 Domai 96.0 0.055 1.2E-06 51.7 10.2 24 53-76 29-52 (221)
401 KOG0738 AAA+-type ATPase [Post 95.9 0.052 1.1E-06 54.2 9.7 65 24-95 209-279 (491)
402 COG1703 ArgK Putative periplas 95.9 0.0093 2E-07 57.5 4.4 58 51-108 48-105 (323)
403 cd03215 ABC_Carb_Monos_II This 95.9 0.058 1.3E-06 49.7 9.7 24 53-76 25-48 (182)
404 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.084 1.8E-06 49.9 11.0 24 53-76 33-56 (207)
405 TIGR00390 hslU ATP-dependent p 95.9 0.016 3.6E-07 59.4 6.4 52 25-76 10-69 (441)
406 cd02019 NK Nucleoside/nucleoti 95.9 0.0046 9.9E-08 46.7 1.9 22 56-77 1-22 (69)
407 COG0563 Adk Adenylate kinase a 95.9 0.012 2.6E-07 53.7 5.0 22 56-77 2-23 (178)
408 KOG0736 Peroxisome assembly fa 95.9 0.18 3.9E-06 54.9 14.2 178 29-231 403-599 (953)
409 PF12775 AAA_7: P-loop contain 95.9 0.0074 1.6E-07 59.4 3.8 138 54-203 33-193 (272)
410 KOG0737 AAA+-type ATPase [Post 95.9 0.043 9.3E-07 54.5 8.9 176 29-230 94-296 (386)
411 TIGR01425 SRP54_euk signal rec 95.9 0.034 7.3E-07 57.9 8.6 56 53-110 99-155 (429)
412 COG2274 SunT ABC-type bacterio 95.9 0.069 1.5E-06 59.6 11.6 24 53-76 498-521 (709)
413 PF13671 AAA_33: AAA domain; P 95.9 0.0061 1.3E-07 53.7 2.8 21 56-76 1-21 (143)
414 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.02 4.3E-07 53.8 6.3 119 53-180 28-158 (204)
415 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.019 4.1E-07 54.4 6.2 23 54-76 29-51 (213)
416 cd03226 ABC_cobalt_CbiO_domain 95.8 0.048 1E-06 51.4 9.0 24 53-76 25-48 (205)
417 COG1102 Cmk Cytidylate kinase 95.8 0.011 2.4E-07 51.4 4.1 45 56-113 2-46 (179)
418 COG5635 Predicted NTPase (NACH 95.8 0.013 2.8E-07 67.4 6.0 183 53-241 221-427 (824)
419 PF07726 AAA_3: ATPase family 95.8 0.0029 6.3E-08 53.3 0.5 27 57-85 2-28 (131)
420 cd03217 ABC_FeS_Assembly ABC-t 95.8 0.046 1E-06 51.3 8.8 25 53-77 25-49 (200)
421 PRK14721 flhF flagellar biosyn 95.8 0.045 9.8E-07 56.9 9.3 89 52-142 189-278 (420)
422 KOG1970 Checkpoint RAD17-RFC c 95.8 0.14 3E-06 53.7 12.5 41 32-76 87-132 (634)
423 PF13245 AAA_19: Part of AAA d 95.8 0.015 3.3E-07 44.6 4.5 24 54-77 10-33 (76)
424 COG4619 ABC-type uncharacteriz 95.8 0.051 1.1E-06 47.8 8.0 23 54-76 29-51 (223)
425 PRK13538 cytochrome c biogenes 95.8 0.057 1.2E-06 50.9 9.3 25 53-77 26-50 (204)
426 TIGR02655 circ_KaiC circadian 95.8 0.017 3.8E-07 62.1 6.4 56 34-95 247-302 (484)
427 cd03254 ABCC_Glucan_exporter_l 95.8 0.072 1.6E-06 51.2 10.2 24 53-76 28-51 (229)
428 COG0529 CysC Adenylylsulfate k 95.8 0.02 4.4E-07 50.7 5.6 24 53-76 22-45 (197)
429 PRK03846 adenylylsulfate kinas 95.8 0.031 6.6E-07 52.4 7.3 25 52-76 22-46 (198)
430 cd03233 ABC_PDR_domain1 The pl 95.8 0.066 1.4E-06 50.4 9.6 25 53-77 32-56 (202)
431 PF08433 KTI12: Chromatin asso 95.8 0.0049 1.1E-07 60.4 2.0 23 55-77 2-24 (270)
432 PRK06547 hypothetical protein; 95.8 0.011 2.4E-07 53.7 4.1 25 52-76 13-37 (172)
433 PRK09270 nucleoside triphospha 95.8 0.044 9.6E-07 52.7 8.6 25 52-76 31-55 (229)
434 TIGR00235 udk uridine kinase. 95.7 0.0094 2E-07 56.4 3.6 26 51-76 3-28 (207)
435 KOG3928 Mitochondrial ribosome 95.7 0.3 6.5E-06 49.4 14.0 60 180-240 401-460 (461)
436 KOG2170 ATPase of the AAA+ sup 95.7 0.02 4.3E-07 55.2 5.7 107 33-158 92-203 (344)
437 TIGR00764 lon_rel lon-related 95.7 0.015 3.3E-07 63.9 5.8 77 25-111 16-92 (608)
438 cd03251 ABCC_MsbA MsbA is an e 95.7 0.11 2.3E-06 50.2 11.1 24 53-76 27-50 (234)
439 PF13086 AAA_11: AAA domain; P 95.7 0.019 4.1E-07 55.3 5.9 52 56-107 19-75 (236)
440 PF06309 Torsin: Torsin; Inte 95.7 0.038 8.2E-07 46.5 6.7 48 27-77 25-76 (127)
441 PRK15424 propionate catabolism 95.7 0.019 4.1E-07 61.9 6.2 47 26-76 218-264 (538)
442 cd02025 PanK Pantothenate kina 95.7 0.038 8.2E-07 52.6 7.6 22 56-77 1-22 (220)
443 TIGR01277 thiQ thiamine ABC tr 95.7 0.045 9.8E-07 52.0 8.1 25 53-77 23-47 (213)
444 PTZ00088 adenylate kinase 1; P 95.6 0.013 2.7E-07 56.0 4.1 21 56-76 8-28 (229)
445 COG0467 RAD55 RecA-superfamily 95.6 0.017 3.7E-07 56.8 5.2 52 52-107 21-72 (260)
446 KOG3347 Predicted nucleotide k 95.6 0.012 2.6E-07 50.4 3.4 70 54-133 7-76 (176)
447 PRK10463 hydrogenase nickel in 95.6 0.029 6.3E-07 55.0 6.6 88 51-144 101-195 (290)
448 TIGR03522 GldA_ABC_ATP gliding 95.6 0.079 1.7E-06 53.3 10.0 25 53-77 27-51 (301)
449 PRK06762 hypothetical protein; 95.6 0.0082 1.8E-07 54.5 2.7 23 54-76 2-24 (166)
450 PF01078 Mg_chelatase: Magnesi 95.6 0.019 4.1E-07 53.1 5.0 42 27-76 3-44 (206)
451 TIGR01420 pilT_fam pilus retra 95.6 0.033 7.1E-07 57.1 7.3 109 53-172 121-229 (343)
452 cd03264 ABC_drug_resistance_li 95.6 0.06 1.3E-06 51.0 8.7 21 56-76 27-47 (211)
453 PRK06995 flhF flagellar biosyn 95.6 0.05 1.1E-06 57.5 8.8 89 53-143 255-344 (484)
454 cd03283 ABC_MutS-like MutS-lik 95.6 0.069 1.5E-06 50.0 8.9 22 55-76 26-47 (199)
455 COG1120 FepC ABC-type cobalami 95.6 0.059 1.3E-06 51.9 8.4 24 53-76 27-50 (258)
456 cd03231 ABC_CcmA_heme_exporter 95.6 0.057 1.2E-06 50.7 8.4 24 53-76 25-48 (201)
457 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.6 0.062 1.3E-06 51.5 8.8 25 53-77 47-71 (224)
458 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.054 1.2E-06 52.7 8.4 25 53-77 24-48 (246)
459 PF03193 DUF258: Protein of un 95.6 0.015 3.3E-07 51.6 4.1 36 33-77 23-58 (161)
460 PRK05480 uridine/cytidine kina 95.5 0.011 2.3E-07 56.1 3.3 26 52-77 4-29 (209)
461 PRK06217 hypothetical protein; 95.5 0.037 7.9E-07 51.2 6.7 22 56-77 3-24 (183)
462 PRK14723 flhF flagellar biosyn 95.5 0.067 1.4E-06 59.5 9.7 89 53-143 184-273 (767)
463 KOG2123 Uncharacterized conser 95.5 0.0023 5E-08 60.6 -1.4 80 438-519 37-123 (388)
464 PRK10923 glnG nitrogen regulat 95.5 0.03 6.4E-07 60.5 6.9 132 27-172 138-282 (469)
465 cd03253 ABCC_ATM1_transporter 95.5 0.099 2.2E-06 50.5 9.9 52 126-177 148-200 (236)
466 PRK10416 signal recognition pa 95.5 0.067 1.5E-06 53.9 8.8 91 53-145 113-208 (318)
467 PTZ00301 uridine kinase; Provi 95.4 0.011 2.4E-07 55.5 3.0 23 54-76 3-25 (210)
468 PF00006 ATP-synt_ab: ATP synt 95.4 0.062 1.3E-06 50.6 8.0 83 54-142 15-114 (215)
469 KOG0726 26S proteasome regulat 95.4 0.066 1.4E-06 51.3 8.0 63 20-84 178-247 (440)
470 KOG0651 26S proteasome regulat 95.4 0.022 4.8E-07 55.0 4.9 31 52-84 164-194 (388)
471 cd03213 ABCG_EPDR ABCG transpo 95.4 0.088 1.9E-06 49.1 9.0 24 53-76 34-57 (194)
472 TIGR02868 CydC thiol reductant 95.4 0.083 1.8E-06 58.0 10.2 25 52-76 359-383 (529)
473 cd03232 ABC_PDR_domain2 The pl 95.4 0.083 1.8E-06 49.2 8.7 24 53-76 32-55 (192)
474 TIGR03574 selen_PSTK L-seryl-t 95.4 0.02 4.4E-07 55.8 4.8 22 56-77 1-22 (249)
475 cd03252 ABCC_Hemolysin The ABC 95.4 0.17 3.6E-06 49.0 11.2 24 53-76 27-50 (237)
476 TIGR03575 selen_PSTK_euk L-ser 95.4 0.15 3.2E-06 51.5 10.9 37 57-94 2-38 (340)
477 PRK15177 Vi polysaccharide exp 95.4 0.069 1.5E-06 50.7 8.2 25 53-77 12-36 (213)
478 PRK06002 fliI flagellum-specif 95.4 0.061 1.3E-06 56.1 8.3 86 53-143 164-264 (450)
479 PRK13407 bchI magnesium chelat 95.3 0.014 3E-07 59.0 3.5 48 23-76 4-51 (334)
480 TIGR03740 galliderm_ABC gallid 95.3 0.066 1.4E-06 51.3 8.1 24 53-76 25-48 (223)
481 KOG0730 AAA+-type ATPase [Post 95.3 0.19 4.1E-06 53.9 11.8 179 27-230 184-386 (693)
482 COG1936 Predicted nucleotide k 95.3 0.012 2.7E-07 52.0 2.6 20 56-75 2-21 (180)
483 COG1131 CcmA ABC-type multidru 95.3 0.12 2.6E-06 51.6 10.1 25 53-77 30-54 (293)
484 COG1428 Deoxynucleoside kinase 95.3 0.0098 2.1E-07 54.5 2.0 25 53-77 3-27 (216)
485 KOG1532 GTPase XAB1, interacts 95.2 0.063 1.4E-06 51.0 7.2 90 51-141 16-123 (366)
486 TIGR01313 therm_gnt_kin carboh 95.2 0.03 6.5E-07 50.6 5.2 20 57-76 1-20 (163)
487 PF00560 LRR_1: Leucine Rich R 95.2 0.0083 1.8E-07 33.6 0.9 17 468-484 2-18 (22)
488 PRK05201 hslU ATP-dependent pr 95.2 0.029 6.2E-07 57.7 5.3 53 25-77 13-73 (443)
489 PRK04040 adenylate kinase; Pro 95.2 0.013 2.8E-07 54.3 2.6 23 54-76 2-24 (188)
490 PRK13657 cyclic beta-1,2-gluca 95.2 0.12 2.6E-06 57.5 10.8 24 53-76 360-383 (588)
491 PRK11160 cysteine/glutathione 95.2 0.13 2.7E-06 57.1 10.8 25 53-77 365-389 (574)
492 cd00227 CPT Chloramphenicol (C 95.2 0.014 3E-07 53.6 2.7 22 55-76 3-24 (175)
493 PRK00131 aroK shikimate kinase 95.2 0.012 2.6E-07 53.8 2.3 24 53-76 3-26 (175)
494 TIGR01818 ntrC nitrogen regula 95.2 0.091 2E-06 56.6 9.5 133 27-172 134-278 (463)
495 PRK09580 sufC cysteine desulfu 95.2 0.12 2.7E-06 50.3 9.6 25 53-77 26-50 (248)
496 PRK14269 phosphate ABC transpo 95.1 0.14 3E-06 49.9 9.8 24 53-76 27-50 (246)
497 PRK13650 cbiO cobalt transport 95.1 0.085 1.8E-06 52.4 8.5 24 53-76 32-55 (279)
498 TIGR02203 MsbA_lipidA lipid A 95.1 0.11 2.3E-06 57.8 10.1 24 53-76 357-380 (571)
499 cd03240 ABC_Rad50 The catalyti 95.1 0.13 2.8E-06 48.4 9.3 52 126-177 132-187 (204)
500 PF09848 DUF2075: Uncharacteri 95.1 0.1 2.2E-06 53.8 9.3 41 55-95 2-42 (352)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-60 Score=527.90 Aligned_cols=551 Identities=31% Similarity=0.482 Sum_probs=440.9
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhh-HHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE-VKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
||.+..++++.+.|... +.++++|+||||+||||||+.++++.. .+.+|+.++||.+++.++...++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHH
Confidence 99999999999999844 349999999999999999999999876 89999999999999999999999999999
Q ss_pred ccCCCCCcc--cHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHHhh-hcccceE
Q 006588 109 LTGSTSNLD--ALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIASM-MRSTDVI 185 (639)
Q Consensus 109 l~~~~~~~~--~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~-~~~~~~~ 185 (639)
++....... ..++.+..+.+.++++|++|||||||+. .+|+.+...+|....||+|++|||++.++.. .+....+
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 987553332 2468888999999999999999999997 4699999999988889999999999999887 5557789
Q ss_pred ECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHcCcccc----hh
Q 006588 186 SIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEEEWKRILNSDLWK----VE 261 (639)
Q Consensus 186 ~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~----~~ 261 (639)
+++.|+.+|||.||.+.++.... ..++.+.+.+++++++|+|+|||+.++|+.|+.+....+|+.+....... ..
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred cccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999975533 23344788899999999999999999999999998889999998765444 22
Q ss_pred hccccchhhHHhhhhCCchhhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcC-cccHHHHHHHHHHHHHhccCccc
Q 006588 262 EIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEE-DEELETIGEEYFGILASRSFFQE 340 (639)
Q Consensus 262 ~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~-~~~~~~~~~~~l~~L~~~sli~~ 340 (639)
+..+.+..++..||+.|+++.|.||+|||.||+++.|+++.++.+|+++|++.+.+ ....++.+..++..|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 33567899999999999999999999999999999999999999999999998844 55688999999999999999987
Q ss_pred cccccCCceeeEEechhHHHHHHHhcc-----cceeEEecC-CcccccccccCCCceEEEEEEecccCcccccccCCCCc
Q 006588 341 FEKSYDNRIIKCKMHDMVHDLAQFVSE-----NECLSLEIN-GSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRI 414 (639)
Q Consensus 341 ~~~~~~~~~~~~~~H~li~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L 414 (639)
.... ++..+|.|||+||++|.++++ +++...... .....+ +...+..++++++.++.+..++... ++++|
T Consensus 472 ~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~-~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L 547 (889)
T KOG4658|consen 472 ERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP-QVKSWNSVRRMSLMNNKIEHIAGSS-ENPKL 547 (889)
T ss_pred cccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc-cccchhheeEEEEeccchhhccCCC-CCCcc
Confidence 6554 566789999999999999998 665444433 222222 2334478899999999988777544 45589
Q ss_pred cEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEE
Q 006588 415 RSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKL 494 (639)
Q Consensus 415 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 494 (639)
++|.+..|..+ ...++..+|..++.|++||+++|.-.+++|..++++.+||+|+++++.++.+|..+++|..|.+|
T Consensus 548 ~tLll~~n~~~----l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 548 RTLLLQRNSDW----LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ceEEEeecchh----hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 99999888521 33556777899999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCc----C
Q 006588 495 DICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEH----L 570 (639)
Q Consensus 495 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~----L 570 (639)
++..+.....+|.....+++|++|.+..-. ...-...++.+.+|++|....+...+ ..+...+..+.+|.. +
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS---VLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch---hHhHhhhhhhHHHHHHhHhh
Confidence 999988777777666779999999886543 11111123344445554433232222 011122233333332 2
Q ss_pred CceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 571 QICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 571 ~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.+.++ ........+..+.+|+.|.+..+..+
T Consensus 700 ~~~~~--------~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 700 SIEGC--------SKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhccc--------ccceeecccccccCcceEEEEcCCCc
Confidence 22111 11223345777889999999988865
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-50 Score=471.64 Aligned_cols=483 Identities=21% Similarity=0.311 Sum_probs=321.9
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC---CCC-
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS---ETF- 96 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~---~~~- 96 (639)
.++....++|||++.++++.++|... .+..++|+|+||+|+||||||+++++ +...+|++.+|++.. ...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~ 251 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSME 251 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchh
Confidence 35556778999999999999998644 34789999999999999999999998 678889888887531 100
Q ss_pred -----------chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcE
Q 006588 97 -----------DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSK 165 (639)
Q Consensus 97 -----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ 165 (639)
....+..+++..+.....-. .. ....+++.++++|+||||||+|+.+ .++.+.....++++|++
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~-~~~~~~~~L~~krvLLVLDdv~~~~--~l~~L~~~~~~~~~Gsr 326 (1153)
T PLN03210 252 IYSSANPDDYNMKLHLQRAFLSEILDKKDIK--IY-HLGAMEERLKHRKVLIFIDDLDDQD--VLDALAGQTQWFGSGSR 326 (1153)
T ss_pred hcccccccccchhHHHHHHHHHHHhCCCCcc--cC-CHHHHHHHHhCCeEEEEEeCCCCHH--HHHHHHhhCccCCCCcE
Confidence 01223344444443222110 00 1244666788999999999998753 56666655566788999
Q ss_pred EEEEccchHHHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCC
Q 006588 166 ILITTRNESIASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKT 245 (639)
Q Consensus 166 ilvTsr~~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 245 (639)
||||||++.+....+..+.++++.++.++|++||.++|++...+ ...+.+++.+|+++|+|+|||++++|++++++ +
T Consensus 327 IIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~ 403 (1153)
T PLN03210 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-D 403 (1153)
T ss_pred EEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-C
Confidence 99999999988766666799999999999999999999866543 24577889999999999999999999999876 6
Q ss_pred HHHHHHHHcCcccchhhccccchhhHHhhhhCCch-hhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcCcccHHHH
Q 006588 246 EEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPS-RVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEEDEELETI 324 (639)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~ 324 (639)
..+|...+...... .+..+..+++.||+.|++ ..|.+|+++|+|+.+.+++ .+..|++.+....
T Consensus 404 ~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 404 KEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 89999998754332 245689999999999986 5999999999998886554 3556666554322
Q ss_pred HHHHHHHHHhccCccccccccCCceeeEEechhHHHHHHHhcccc-------eeEEecCCcccccccccCCCceEEEEEE
Q 006588 325 GEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQFVSENE-------CLSLEINGSEELNVKKSLDEKVRHLMLI 397 (639)
Q Consensus 325 ~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 397 (639)
+..++.|++++||+... + ++.||+++|+++++++.++ .+.+..++...........+.++.+++.
T Consensus 469 -~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~ 540 (1153)
T PLN03210 469 -NIGLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD 540 (1153)
T ss_pred -hhChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec
Confidence 22389999999997642 1 4899999999999987554 3445554444444444556677877776
Q ss_pred ecccCc---ccccccCCCCccEEEeeccccCC-CCchhhhHHHHHhhCCceeEEecCCCCCCCccc--------------
Q 006588 398 IGKEST---FPISTCRTKRIRSLLIECRRFDH-SSLNGEILEELFRELTSLRALDFPSLYLPSEIP-------------- 459 (639)
Q Consensus 398 ~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-------------- 459 (639)
-+.... -+..|.+|.+|+.|.+..+.... ......+|..+..-..+|+.|.+.++. ...+|
T Consensus 541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~ 619 (1153)
T PLN03210 541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQ 619 (1153)
T ss_pred cCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECc
Confidence 555433 23457788888888776543211 111122333311112345555555544 33344
Q ss_pred --------ccccccCCCcEEeccCCC-CcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccc
Q 006588 460 --------RNIKKLIHLRYLNLSGQK-IEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMP 530 (639)
Q Consensus 460 --------~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p 530 (639)
..+..+++|++|+|+++. ++.+| .++.+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 444445555555554433 33443 24445555555555555455555555555555555555554445555
Q ss_pred ccCCCCcCCcccc
Q 006588 531 VGIARLKSLRTLE 543 (639)
Q Consensus 531 ~~~~~l~~L~~L~ 543 (639)
..+ .+++|++|.
T Consensus 699 ~~i-~l~sL~~L~ 710 (1153)
T PLN03210 699 TGI-NLKSLYRLN 710 (1153)
T ss_pred CcC-CCCCCCEEe
Confidence 433 344444444
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2e-39 Score=326.00 Aligned_cols=278 Identities=37% Similarity=0.622 Sum_probs=219.4
Q ss_pred chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 32 RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
|+.++++|.+.|.... ++.++|+|+|+||+||||||.+++++.....+|+.++|+++....+..+++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998643 478999999999999999999999977789999999999999999999999999999987
Q ss_pred CCC---CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHHhhhcc-cceEEC
Q 006588 112 STS---NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIASMMRS-TDVISI 187 (639)
Q Consensus 112 ~~~---~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~-~~~~~l 187 (639)
... ...+.++....+.+.++++++||||||+++.. .|+.+...++....+++||||||+..+...... ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 743 34677889999999999999999999998864 666777777777779999999999887765544 678999
Q ss_pred CCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHcCcccchh---hcc
Q 006588 188 KELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEEEWKRILNSDLWKVE---EIE 264 (639)
Q Consensus 188 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~ 264 (639)
++|+.+||++||.+.++... ........+.+.+|++.|+|+||||.++|++++.+....+|...++....... ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987554 11122334558999999999999999999999655456778887754333332 234
Q ss_pred ccchhhHHhhhhCCchhhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCCc
Q 006588 265 KGFLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAE 316 (639)
Q Consensus 265 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~ 316 (639)
..+..++..||+.|+++.|.||.+||+||+++.++++.++.+|+++|++...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6788999999999999999999999999999999999999999999988654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.2e-18 Score=204.69 Aligned_cols=222 Identities=24% Similarity=0.333 Sum_probs=113.8
Q ss_pred ceEEEEEEecccC-cccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCC----------------
Q 006588 390 KVRHLMLIIGKES-TFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSL---------------- 452 (639)
Q Consensus 390 ~~~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n---------------- 452 (639)
+++.+.+..+.+. .++..+..+++|+.|++++|.+ .+.+|..++..+.+|++|++++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-----CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 4455555544432 2344445555555554444432 33444444444455555555544
Q ss_pred ------CCCCcccccccccCCCcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCc
Q 006588 453 ------YLPSEIPRNIKKLIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDS 525 (639)
Q Consensus 453 ------~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~ 525 (639)
.+.+.+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 444444555555555555555555544 4455555555555555555554455555555555555555555555
Q ss_pred cccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEe
Q 006588 526 VRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKF 605 (639)
Q Consensus 526 ~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 605 (639)
.+.+|..++.+++|++|+ ..++.+.+.+|..++++++|+.|++.+|.+.+.+|. .+.++.+|+.|+|++
T Consensus 225 ~~~~p~~l~~l~~L~~L~----L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLD----LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-------SIFSLQKLISLDLSD 293 (968)
T ss_pred CCcCChhHhcCCCCCEEE----CcCceeccccChhHhCCCCCCEEECcCCeeeccCch-------hHhhccCcCEEECcC
Confidence 555555555555555554 233334444555555555555555555554433332 244556666666665
Q ss_pred ccCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 606 DEKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
|.+. ......+..+++|+.|++
T Consensus 294 n~l~------------~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 294 NSLS------------GEIPELVIQLQNLEILHL 315 (968)
T ss_pred Ceec------------cCCChhHcCCCCCcEEEC
Confidence 5432 223444556777777754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=1e-18 Score=205.24 Aligned_cols=202 Identities=23% Similarity=0.259 Sum_probs=102.4
Q ss_pred CceEEEEEEeccc-CcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKE-STFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
.+++.+.+.++.+ ..+|..+.++++|++|++.+|.+ .+.+|.. +..+++|+.|++++|.+.+.+|..++++++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-----~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-----VGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC-----cCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 3445555554443 23444455555555554444432 3333333 444555555555555544455555555555
Q ss_pred CcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 468 LRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 468 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
|+.|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~--- 314 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH--- 314 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE---
Confidence 555555555544 4455555555555555555554445555555555555555555554445555555555555554
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEecc
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDE 607 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 607 (639)
...+.+.+.+|..+..+++|+.|++.+|.+.+.+|. .+..+.+|+.|+|++|.
T Consensus 315 -l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-------~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 315 -LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-------NLGKHNNLTVLDLSTNN 367 (968)
T ss_pred -CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-------HHhCCCCCcEEECCCCe
Confidence 333334444555555555555555555554433332 24455566666666554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=2.8e-19 Score=181.04 Aligned_cols=250 Identities=22% Similarity=0.232 Sum_probs=193.4
Q ss_pred eEEecCCcccccccccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecC
Q 006588 371 LSLEINGSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFP 450 (639)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 450 (639)
+..+.......|...+...+++|+++.||....+...++.++.|+++.++.|++.+.+ +|+.+ -.++.|++||||
T Consensus 37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG----iP~di-F~l~dLt~lDLS 111 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG----IPTDI-FRLKDLTILDLS 111 (1255)
T ss_pred EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC----CCchh-cccccceeeecc
Confidence 3344445566666667778999999999999888889999999999999999987544 56664 459999999999
Q ss_pred CCCCCCcccccccccCCCcEEeccCCCCcccchhh-hcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccc
Q 006588 451 SLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEAL-CELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYM 529 (639)
Q Consensus 451 ~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~ 529 (639)
.|+ ..+.|..+....++-+|+||+|+|..+|..+ -++..|-+|||++|. +..+|+-+..+.+|++|++++|++.-.
T Consensus 112 hNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hf- 188 (1255)
T KOG0444|consen 112 HNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHF- 188 (1255)
T ss_pred hhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHH-
Confidence 999 7889999999999999999999999999865 589999999999998 888999999999999999999975432
Q ss_pred cccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 530 PVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 530 p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.+..+++++.|....+++.+.....+|.++..+.+|..++++.|.+ ..+|+ ++-++.+|+.|+||.|.++
T Consensus 189 --QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPe-------cly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 189 --QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPE-------CLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred --HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchH-------HHhhhhhhheeccCcCcee
Confidence 1334444444444445666667777899999999999999999974 33343 5778899999999988865
Q ss_pred cCCCC----------CCCcccHHHHhhcCCCCCCCccee
Q 006588 610 KRGGE----------RRKNEDDQLLLEALRPPPYLKELA 638 (639)
Q Consensus 610 ~~~~~----------~~~~~~~~~~~~~l~~~~~L~~L~ 638 (639)
....+ +.+++-..-+++.+++++.|++|.
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHH
Confidence 31111 122222223456667777776653
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.66 E-value=1.2e-14 Score=170.07 Aligned_cols=297 Identities=14% Similarity=0.168 Sum_probs=189.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC-CCCchHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS-ETFDEFR 100 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ 100 (639)
||..+.++|-|++..++|.+.. ..++++|+|++|.||||++..+.+. +..+.|+++. ...+...
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~~---------~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGAN---------NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPER 73 (903)
T ss_pred CCCCccccCcchHHHHHHhccc---------CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHH
Confidence 5556668899998887776422 5789999999999999999988752 2269999996 4456677
Q ss_pred HHHHHHHHccCCCCCc-------------ccHHHHHHHHHHhc-C-CceEEEEEeCCCCCCccCchhhhHhh-hcCCCCc
Q 006588 101 IAKAMLEALTGSTSNL-------------DALQSLLISIDESI-A-GKRFLLVLDDVWDGDYIKWEPFYHCL-KKGLHGS 164 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~-------------~~~~~~~~~l~~~l-~-~~~~LlvlDd~~~~~~~~~~~l~~~l-~~~~~~~ 164 (639)
++..++..+....... .+.......+...+ . +.+++|||||++..+......++.++ ....++.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 8888888775222110 11222232222222 2 67899999999887655555444444 4445667
Q ss_pred EEEEEccchHHH---hhhcccceEECC----CCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 165 KILITTRNESIA---SMMRSTDVISIK----ELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 165 ~ilvTsr~~~~~---~~~~~~~~~~l~----~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
++|||||...-. .........++. +|+.+|+.++|....+..-. .+.+.+|++.|+|+|+++..++
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~-------~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE-------AAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC-------HHHHHHHHHHhCChHHHHHHHH
Confidence 888999974211 111112345555 89999999999876542211 1237899999999999999998
Q ss_pred hhhcCCCC-HHHHHHHHcCcccchhhc-cccchhhHH-hhhhCCchhhHHHHhhhccCCCCCccChHHHHHHHHHcCCCC
Q 006588 238 GLMSSKKT-EEEWKRILNSDLWKVEEI-EKGFLTPLW-LSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLS 314 (639)
Q Consensus 238 ~~l~~~~~-~~~~~~~l~~~~~~~~~~-~~~l~~~l~-~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~ 314 (639)
..+..... ...... ..... ...+...+. ..++.|+++.+.++..+|+++ .++.+ +...-. |
T Consensus 227 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~l~--~--- 290 (903)
T PRK04841 227 LSARQNNSSLHDSAR-------RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVRVT--G--- 290 (903)
T ss_pred HHHhhCCCchhhhhH-------hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHHHc--C---
Confidence 87754421 111111 11111 223455443 348999999999999999985 33322 222110 1
Q ss_pred CcCcccHHHHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHHHHhc
Q 006588 315 AEEDEELETIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQFVS 366 (639)
Q Consensus 315 ~~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~~~~ 366 (639)
. +.+...++.|.+.+++....++ .+ .+|..|++++++++...
T Consensus 291 -~------~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -E------ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred -C------CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 1 1235669999999997432221 11 25788999999998654
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.63 E-value=3.1e-14 Score=151.26 Aligned_cols=306 Identities=17% Similarity=0.179 Sum_probs=203.0
Q ss_pred cccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CC
Q 006588 18 VQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TF 96 (639)
Q Consensus 18 ~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~ 96 (639)
..-.+|..+.+.|-|.+-+++|.+.. ..|.+.|+.|+|.|||||+..++. ....-..|.|+++++ ..
T Consensus 10 sk~~~P~~~~~~v~R~rL~~~L~~~~---------~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dn 77 (894)
T COG2909 10 SKLVRPVRPDNYVVRPRLLDRLRRAN---------DYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDN 77 (894)
T ss_pred cccCCCCCcccccccHHHHHHHhcCC---------CceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccC
Confidence 33345555778899988888887644 689999999999999999998865 223336799999864 56
Q ss_pred chHHHHHHHHHHccCCCCCc-------------ccHHHHHHHHHHhcC--CceEEEEEeCCCCCCccCchh-hhHhhhcC
Q 006588 97 DEFRIAKAMLEALTGSTSNL-------------DALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEP-FYHCLKKG 160 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~~~~-l~~~l~~~ 160 (639)
++..+..-++..+....+.. .+...+.+.+...+. .+++.+||||..-........ +...+...
T Consensus 78 dp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~ 157 (894)
T COG2909 78 DPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA 157 (894)
T ss_pred CHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC
Confidence 77788888888886433222 223334444444333 468999999997765555544 44445556
Q ss_pred CCCcEEEEEccchHHHh---hhcccceEEC----CCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 161 LHGSKILITTRNESIAS---MMRSTDVISI----KELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~~~---~~~~~~~~~l----~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.++-..+||||+..-.. ..-....+++ -.|+.+|+.++|.......-. ...+..+++.++|.+-|+
T Consensus 158 P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al 230 (894)
T COG2909 158 PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAAL 230 (894)
T ss_pred CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHH
Confidence 77889999999864221 1111223333 348999999999887631111 122789999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHcCcccchhhccccchh-hHHhhhhCCchhhHHHHhhhccCCCCCccChHHHHHHHHHcCC
Q 006588 234 KTMGGLMSSKKTEEEWKRILNSDLWKVEEIEKGFLT-PLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGY 312 (639)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~ 312 (639)
.+++-..+++.+.+.-...+.. ..+-+.+ ..+..++.||++.|.++..+|++.. +.. +++..-.
T Consensus 231 ~L~aLa~~~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~~-eL~~~Lt---- 295 (894)
T COG2909 231 QLIALALRNNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FND-ELCNALT---- 295 (894)
T ss_pred HHHHHHccCCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hhH-HHHHHHh----
Confidence 9999888854444332222221 1111222 2456789999999999999999832 222 2222211
Q ss_pred CCCcCcccHHHHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHHHHhccc
Q 006588 313 LSAEEDEELETIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQFVSEN 368 (639)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~~~~~~ 368 (639)
.++.+..+++.|..+++.-..-++. ..+|+.|.++.+|.+.....
T Consensus 296 --------g~~ng~amLe~L~~~gLFl~~Ldd~---~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 --------GEENGQAMLEELERRGLFLQRLDDE---GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --------cCCcHHHHHHHHHhCCCceeeecCC---CceeehhHHHHHHHHhhhcc
Confidence 1233667799999999875433322 23799999999999876544
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=2.4e-13 Score=142.89 Aligned_cols=320 Identities=14% Similarity=0.054 Sum_probs=186.5
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
+...|..|+||++|+++|...+..... ......+.|+|++|+|||++++.++++.........++++++....+...+
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 344667899999999999999965432 234567899999999999999999985433322345778888888888899
Q ss_pred HHHHHHHccCCC--CCcccHHHHHHHHHHhcC--CceEEEEEeCCCCCCc----cCchhhhHhhhcCCC-CcEEEEEccc
Q 006588 102 AKAMLEALTGST--SNLDALQSLLISIDESIA--GKRFLLVLDDVWDGDY----IKWEPFYHCLKKGLH-GSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~~--~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~----~~~~~l~~~l~~~~~-~~~ilvTsr~ 172 (639)
+..++.++.... ....+.++....+.+.+. +++++||||+++.... ..+..+...+..... +..+|.++..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 999999987521 122345566666666554 4578999999987531 112222222222211 2335666554
Q ss_pred hHHHhhh-------cccceEECCCCCHHHHHHHHHHHhhCCC--CchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhc--
Q 006588 173 ESIASMM-------RSTDVISIKELAEEECWALFKQLAFFGR--STEECEKLEQIGQRIARKCKGLPLAAKTMGGLMS-- 241 (639)
Q Consensus 173 ~~~~~~~-------~~~~~~~l~~l~~~ea~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~-- 241 (639)
....... -....+.+.+++.++..+++..++.... ..........+++......|..+.|+.++-....
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3322211 1135789999999999999988764221 1111122222222222224556677666543221
Q ss_pred --CC---CCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhccCCC--CCccChHHHHHH--HHHcCC
Q 006588 242 --SK---KTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPK--DYNIEKDKLITL--WMAQGY 312 (639)
Q Consensus 242 --~~---~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~--~~~i~~~~l~~~--w~~~g~ 312 (639)
.+ .+.+......... -...+...+..|+.+.|.++..++...+ ...+....+... .+++..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 11 2333443333311 1233556788999999988877765432 123444444432 222211
Q ss_pred CCCcCcccHHHHHHHHHHHHHhccCcccccc--ccCCceeeEEech
Q 006588 313 LSAEEDEELETIGEEYFGILASRSFFQEFEK--SYDNRIIKCKMHD 356 (639)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~--~~~~~~~~~~~H~ 356 (639)
...+. .......++..|...|+|..... +..|..+.++++.
T Consensus 333 --~~~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 333 --GYEPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred --CCCcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 11111 12334568999999999986543 3345555565543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=6.6e-17 Score=164.08 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=130.9
Q ss_pred cCCcccccccccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCC
Q 006588 375 INGSEELNVKKSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLY 453 (639)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 453 (639)
.+...++|......++.-.+.+++|.+..+| .-+-++..|-.|+++.|.+ ..+||. +..+..|++|.|++|.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL------e~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL------EMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh------hhcCHH-HHHHhhhhhhhcCCCh
Confidence 3344555544455556666666666666666 3344566666665555552 234554 5666777777777766
Q ss_pred CCC-------------------------cccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchh
Q 006588 454 LPS-------------------------EIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEG 508 (639)
Q Consensus 454 ~~~-------------------------~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 508 (639)
+.- .+|.++..+.+|+.+++|.|.+..+|..+-++++|+.|+|++|. +.++..+
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~ 263 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMT 263 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeecc
Confidence 321 24555555556666666666666666666666666666666665 4444445
Q ss_pred hhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhc
Q 006588 509 IGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAK 588 (639)
Q Consensus 509 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 588 (639)
.+...+|++|++|.|. +..+|..+..+++|+.|...+ |...-.-+|+.++.+.+|+++...+|.+ .-+|.
T Consensus 264 ~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~---NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPE----- 333 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANN---NKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPE----- 333 (1255)
T ss_pred HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhcc---CcccccCCccchhhhhhhHHHHhhcccc-ccCch-----
Confidence 5555666666666665 456777777777777775221 1111233677788888888887777753 33443
Q ss_pred ccccccccCcceEEEEeccCC
Q 006588 589 RLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 589 ~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.++.|..|+.|.|+.|++.
T Consensus 334 --glcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 334 --GLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred --hhhhhHHHHHhccccccee
Confidence 4888999999999888754
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=4.5e-12 Score=131.86 Aligned_cols=306 Identities=11% Similarity=0.042 Sum_probs=177.5
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH-hcC---CceEEEEeCCCCc
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK-RQF---DKILWVCVSETFD 97 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~ 97 (639)
+...|..|+||++|+++|...+..... +...+.+.|+|++|+|||++++.+++..... ... ..++|+++....+
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 344456899999999999999975432 3355789999999999999999998853211 111 2567889888788
Q ss_pred hHHHHHHHHHHcc---CCCC-CcccHHHHHHHHHHhc--CCceEEEEEeCCCCCCccCchhhhHhhhc------C-CCCc
Q 006588 98 EFRIAKAMLEALT---GSTS-NLDALQSLLISIDESI--AGKRFLLVLDDVWDGDYIKWEPFYHCLKK------G-LHGS 164 (639)
Q Consensus 98 ~~~~~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~l~~------~-~~~~ 164 (639)
..+++..++.++. ...+ ...+.++....+.+.+ .+++++||||+++..... .+.++..+.. . ....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-DDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-CcHHHHhHhccccccCCCCCeE
Confidence 8899999999984 2221 1123444444454444 356899999999876311 1222222211 1 1233
Q ss_pred EEEEEccchHHHhh----h-cc--cceEECCCCCHHHHHHHHHHHhhCC-CCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 165 KILITTRNESIASM----M-RS--TDVISIKELAEEECWALFKQLAFFG-RSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 165 ~ilvTsr~~~~~~~----~-~~--~~~~~l~~l~~~ea~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.+|.+++....... . .. ...+.+.+++.++..+++..++... ....-.....+.+..++..+.|.|..+..+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 45555544332111 1 11 2578999999999999998886411 111111223344566777778888543322
Q ss_pred Hhh-h----cC---CCCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhccCC--CCCccChHHHHHH
Q 006588 237 GGL-M----SS---KKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFP--KDYNIEKDKLITL 306 (639)
Q Consensus 237 ~~~-l----~~---~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~i~~~~l~~~ 306 (639)
... . .. ..+.+......... -.......+..|+.+.+.++..++... ++..+...++...
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 221 1 11 12233333222210 123345677889988887776665332 2333555555553
Q ss_pred HH--HcCCCCCcCcccHHHHHHHHHHHHHhccCcccccc
Q 006588 307 WM--AQGYLSAEEDEELETIGEEYFGILASRSFFQEFEK 343 (639)
Q Consensus 307 w~--~~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~ 343 (639)
+- ++.. ... +........++..|...|+|.....
T Consensus 317 y~~~~~~~--~~~-~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 317 YKEVCEDI--GVD-PLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHhc--CCC-CCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 21 1211 111 2233456677999999999987543
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=1.5e-15 Score=153.39 Aligned_cols=205 Identities=17% Similarity=0.138 Sum_probs=130.1
Q ss_pred ceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCC--------------
Q 006588 390 KVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYL-------------- 454 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~-------------- 454 (639)
.+++|.+..|.+..+. ..|..+.+|.+|.+..|. ...+|...|..+++|+.|+|..|.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr------ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR------ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCc------ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 4566666666665543 445555555556555555 3344555555555555555555552
Q ss_pred ----------CCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCC
Q 006588 455 ----------PSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDT 523 (639)
Q Consensus 455 ----------~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n 523 (639)
..---..|-.|.+++.|+|+.|+++++-. ++-+|..|+.|+++.|.+...-+.++.-.++|+.|++++|
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 22222345556666667777777665533 4557777888888887755555666666677888888888
Q ss_pred CccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEE
Q 006588 524 DSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTL 603 (639)
Q Consensus 524 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l 603 (639)
.+....+..|..|+.|++|. .+.|.++...-..|..+++|++|++.+|.+...|.+... .+..+++|+.|.+
T Consensus 328 ~i~~l~~~sf~~L~~Le~Ln----Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~----~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELN----LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV----AFNGLPSLRKLRL 399 (873)
T ss_pred ccccCChhHHHHHHHhhhhc----ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh----hhccchhhhheee
Confidence 76555556677777777777 444444444455677788888888888887777776333 3666888888888
Q ss_pred EeccC
Q 006588 604 KFDEK 608 (639)
Q Consensus 604 ~~~~~ 608 (639)
..|.+
T Consensus 400 ~gNql 404 (873)
T KOG4194|consen 400 TGNQL 404 (873)
T ss_pred cCcee
Confidence 87763
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.2e-15 Score=147.67 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=38.7
Q ss_pred eEEEEEEecccCcccccc-cCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 391 VRHLMLIIGKESTFPIST-CRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 391 ~~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
+..+....+.++.+|... +.++++.+|+++.|+ ..++|.. ++.+++|..||+|+|. +..+|.+++++ +|+
T Consensus 230 L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk------lke~Pde-~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 230 LKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK------LKEVPDE-ICLLRSLERLDLSNND-ISSLPYSLGNL-HLK 300 (565)
T ss_pred HHHHHhcccHHHhhHHHHhcccccceeeeccccc------cccCchH-HHHhhhhhhhcccCCc-cccCCcccccc-eee
Confidence 344444444444455332 255555555555555 2344544 4455555555555555 44455555555 555
Q ss_pred EEeccCC
Q 006588 470 YLNLSGQ 476 (639)
Q Consensus 470 ~L~l~~~ 476 (639)
.|-+.||
T Consensus 301 ~L~leGN 307 (565)
T KOG0472|consen 301 FLALEGN 307 (565)
T ss_pred ehhhcCC
Confidence 5544443
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=2.8e-16 Score=134.57 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=117.0
Q ss_pred cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhh
Q 006588 407 STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALC 486 (639)
Q Consensus 407 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~ 486 (639)
.+.++++...|.++.|+ ...+|+. +..+.+|++|++++|+ ++++|..++.+++|+.|++.-|++..+|..|+
T Consensus 28 gLf~~s~ITrLtLSHNK------l~~vppn-ia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK------LTVVPPN-IAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cccchhhhhhhhcccCc------eeecCCc-HHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 34556666666555555 2345555 6777888888888888 67778788888888888888888888888888
Q ss_pred cCCCccEEecCCCCCc-cccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCccccc
Q 006588 487 ELYNLEKLDICSCSCL-KELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLK 565 (639)
Q Consensus 487 ~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 565 (639)
.++.|+.|||..|++. ..+|..|..++.|+.|.++.|. .+.+|..++.+++||.|.+. .+. ....|..++.+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lr---dnd--ll~lpkeig~lt 173 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLR---DND--LLSLPKEIGDLT 173 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeec---cCc--hhhCcHHHHHHH
Confidence 8888888888877754 3577778888888888888886 46778888888888877632 222 234677788888
Q ss_pred CCCcCCceeeeCcCCCC
Q 006588 566 NLEHLQICGIRGLGDVS 582 (639)
Q Consensus 566 ~L~~L~l~~n~~~~~~~ 582 (639)
.|++|.+.+|++.-..|
T Consensus 174 ~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHhcccceeeecCh
Confidence 88888888887544333
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=1.9e-14 Score=145.53 Aligned_cols=203 Identities=19% Similarity=0.130 Sum_probs=90.8
Q ss_pred ceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 390 KVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
++++|.+.+|-+.++. +.+.-++.|++|+++.|.+ ..++...|..-.+++.|+|++|.++..-...|.++.+|
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i------s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI------SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh------hcccCCCCCCCCCceEEeeccccccccccccccccchh
Confidence 3444444444443332 3334444444444444432 12222222223344555555555333333444444455
Q ss_pred cEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEe
Q 006588 469 RYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRV 547 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~ 547 (639)
..|.|+.|.++.+|. .|.+|++|+.|+|..|.+-..--..|.++++|+.|.+..|.+..---..|..+.++++|+
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~---- 275 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN---- 275 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee----
Confidence 555555555555543 333455555555555442111122344555555555555543222222244455555554
Q ss_pred cCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 548 SGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
...|.+..--..++.+++.|+.|+++.|.+....++ .-+.++.|+.|+|++|.+.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------SWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecc-------hhhhcccceeEeccccccc
Confidence 223333333344555666666666666653222222 2334566677777666643
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=2.7e-13 Score=159.90 Aligned_cols=181 Identities=23% Similarity=0.282 Sum_probs=83.1
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
+++.|.+.++.+..++..+..+++|+.|++.++.. ...+|. ++.+++|+.|++++|.....+|..++++.+|+
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~-----l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN-----LKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCC-----cCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 44444444444444444444455555554433321 222221 34455555555555544445555555555555
Q ss_pred EEeccCCC-CcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEe-
Q 006588 470 YLNLSGQK-IEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRV- 547 (639)
Q Consensus 470 ~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~- 547 (639)
.|++++|. ++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|. +..+|..+ .+++|++|.+..+
T Consensus 685 ~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMK 758 (1153)
T ss_pred EEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccc
Confidence 55555542 44444433 4445555555554434333321 2234444444443 23344322 2233333322110
Q ss_pred --------------------------cCCCccCCCccCCcccccCCCcCCceeeeCcCCCCC
Q 006588 548 --------------------------SGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSD 583 (639)
Q Consensus 548 --------------------------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 583 (639)
..++.....+|..++++++|+.|++.+|..+..+|.
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 122223445677777788888888777655555443
No 17
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.43 E-value=6e-13 Score=129.35 Aligned_cols=195 Identities=21% Similarity=0.207 Sum_probs=104.8
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH----
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA---- 104 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---- 104 (639)
|+||++|+++|.+.+... ..+.++|+|+.|+|||+|++++.+. .......++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 899999999999999743 3578999999999999999999883 3222224555555444333222111
Q ss_pred ---------HHHHccCCCC------C----cccHHHHHHHHHHhcCCceEEEEEeCCCCCC-cc-C----chhhhHhhhc
Q 006588 105 ---------MLEALTGSTS------N----LDALQSLLISIDESIAGKRFLLVLDDVWDGD-YI-K----WEPFYHCLKK 159 (639)
Q Consensus 105 ---------il~~l~~~~~------~----~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-~~-~----~~~l~~~l~~ 159 (639)
+...+..... . ..........+.+ .+++++||+||++... .. . ...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 1111111110 0 1223333333332 2345999999998765 11 1 2234444443
Q ss_pred --CCCCcEEEEEccchHHHhh--------hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc
Q 006588 160 --GLHGSKILITTRNESIASM--------MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL 229 (639)
Q Consensus 160 --~~~~~~ilvTsr~~~~~~~--------~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 229 (639)
......+++++....+... .+....+.+++|+.+++++++....... ... +...+..++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCCC
Confidence 2233344455444333222 2334569999999999999999976543 111 11234479999999999
Q ss_pred hhHHHHH
Q 006588 230 PLAAKTM 236 (639)
Q Consensus 230 Plal~~~ 236 (639)
|..|..+
T Consensus 228 P~~l~~~ 234 (234)
T PF01637_consen 228 PRYLQEL 234 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9988653
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=2.1e-15 Score=145.88 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=102.0
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCC---------------
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYL--------------- 454 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~--------------- 454 (639)
.+..+.+.++....+|+.++++..+..+.++.|+ ..++|+. +..+..|+.|+.++|.+
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------HhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 4445555555555555555555555555554444 2244444 34445555555555551
Q ss_pred -------CCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccc
Q 006588 455 -------PSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVR 527 (639)
Q Consensus 455 -------~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~ 527 (639)
...+|..+..+.+|..+++.+|+++++|+..-.|+.|+.||...|- ++.+|+.++.+.+|..|++..|. +.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nk-i~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNK-IR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcc-cc
Confidence 2333444444444444455555555554444345555555555554 55566666666666666666664 34
Q ss_pred cccccCCCCcCCccccceEecCCCccCCCccCCc-ccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 528 YMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRL-ESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 528 ~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
.+| .|..++.|.+|+ .+.|.+. .+|... .+++++..|++..|++ ..+|+ .++-+.+|..||+++|
T Consensus 220 ~lP-ef~gcs~L~Elh----~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl-ke~Pd-------e~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELH----VGENQIE-MLPAEHLKHLNSLLVLDLRDNKL-KEVPD-------EICLLRSLERLDLSNN 285 (565)
T ss_pred cCC-CCCccHHHHHHH----hcccHHH-hhHHHHhcccccceeeecccccc-ccCch-------HHHHhhhhhhhcccCC
Confidence 555 455555565555 3333222 233333 3666666666666653 33333 2455566777777766
Q ss_pred cCC
Q 006588 607 EKE 609 (639)
Q Consensus 607 ~~~ 609 (639)
.++
T Consensus 286 ~is 288 (565)
T KOG0472|consen 286 DIS 288 (565)
T ss_pred ccc
Confidence 643
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=4.4e-15 Score=127.30 Aligned_cols=145 Identities=25% Similarity=0.348 Sum_probs=111.8
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
+.+.++.++|+.+..+|+.+.++.+|++|.+.+|+ ..++|.+ ++.+++|+.|+++.|. ...+|..|+.++-|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq------ie~lp~~-issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ------IEELPTS-ISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch------hhhcChh-hhhchhhhheecchhh-hhcCccccCCCchh
Confidence 56777788888888888888888888888777776 5566666 6778888888888887 56677778888888
Q ss_pred cEEeccCCCCc--ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 469 RYLNLSGQKIE--KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 469 ~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
+.|+|..|.+. .+|..|-.|.-|+-|.|+.|. ...+|..++++++|+.|.++.|.+ -++|..++.++.|++|+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELH 179 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHh
Confidence 88888888777 677777777777778887777 566777788888888888887763 46777788788887776
No 20
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.41 E-value=4e-12 Score=143.23 Aligned_cols=314 Identities=15% Similarity=0.145 Sum_probs=190.9
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEe---CCCCchH---HH
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCV---SETFDEF---RI 101 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~~~~---~~ 101 (639)
.++||+.|++.|...+..... ....++.|.|.+|||||++++++.. .+.+.+...+--.+ ....+.. +.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 379999999999999998874 4667999999999999999999987 34433222221112 2222222 23
Q ss_pred HHHHHHHc-------------------cCCCCCc----------------------ccHHH-----HHHHHHHhc-CCce
Q 006588 102 AKAMLEAL-------------------TGSTSNL----------------------DALQS-----LLISIDESI-AGKR 134 (639)
Q Consensus 102 ~~~il~~l-------------------~~~~~~~----------------------~~~~~-----~~~~l~~~l-~~~~ 134 (639)
.+.++.++ +...... ...+. .+..+.-.. +.+|
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333333 1110000 00011 111122222 4569
Q ss_pred EEEEEeCCCCCCccCchhhhHhhhcCC------CCcEEEEEccch--HHHhhhcccceEECCCCCHHHHHHHHHHHhhCC
Q 006588 135 FLLVLDDVWDGDYIKWEPFYHCLKKGL------HGSKILITTRNE--SIASMMRSTDVISIKELAEEECWALFKQLAFFG 206 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~~~~l~~~l~~~~------~~~~ilvTsr~~--~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~ 206 (639)
.++|+||++++|..+...+...+..-. ...-.+.|.+.. .+.........+.+.+|+..+...++....+..
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999999998888766655544432 011122222221 222323446789999999999999999988643
Q ss_pred CCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCC------CCHHHHHHHHcCcccchhhccccchhhHHhhhhCCch
Q 006588 207 RSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSK------KTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPS 280 (639)
Q Consensus 207 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~ 280 (639)
.... .+....|++++.|+|+.+..+.+.+... .+...|..-... .......+.+.+.+...+++||.
T Consensus 236 ~~~~-----~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~--i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 KLLP-----APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS--LGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred cccc-----chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh--cCCchhhHHHHHHHHHHHhcCCH
Confidence 3322 3347899999999999999999988764 223334322211 11111222355578899999999
Q ss_pred hhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcCcccHHHHHHHHHHHHHhccCcccccc---ccCCcee-eEEech
Q 006588 281 RVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEEDEELETIGEEYFGILASRSFFQEFEK---SYDNRII-KCKMHD 356 (639)
Q Consensus 281 ~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~---~~~~~~~-~~~~H~ 356 (639)
..|.++...||++..|+ ...|...+- ......+...++.|.+..++-..+. ....... |-..|+
T Consensus 309 ~t~~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 99999999999976654 555554441 1344556677788877777753211 1111111 225799
Q ss_pred hHHHHHHHh
Q 006588 357 MVHDLAQFV 365 (639)
Q Consensus 357 li~~~~~~~ 365 (639)
++++.+-..
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 999888543
No 21
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=8.8e-11 Score=116.69 Aligned_cols=182 Identities=19% Similarity=0.157 Sum_probs=114.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHH----
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDE---- 128 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~---- 128 (639)
+.+.++|+|++|+||||+++.+++... ...+ .+.|+ +....+..+++..++..++..... .+.......+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~-~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD-QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC-CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 456899999999999999999987422 1111 12232 333456778999999988765432 222222333322
Q ss_pred -hcCCceEEEEEeCCCCCCccCchhhhHhhhcC----CCCcEEEEEccchHHHhhh----------cccceEECCCCCHH
Q 006588 129 -SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG----LHGSKILITTRNESIASMM----------RSTDVISIKELAEE 193 (639)
Q Consensus 129 -~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~----~~~~~ilvTsr~~~~~~~~----------~~~~~~~l~~l~~~ 193 (639)
...+++.++|+||++......++.+.. +... .....|++|.... ....+ .....+.+.+++.+
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRM-LSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHH-HhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 235778999999998876555555543 3221 1223456665532 11111 11346789999999
Q ss_pred HHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 194 ECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 194 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
|..+++..............-..+.++.|++.++|+|..|+.++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987764332211111123558999999999999999998776
No 22
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.31 E-value=6.2e-11 Score=120.72 Aligned_cols=267 Identities=19% Similarity=0.174 Sum_probs=146.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.|..-.+|+||+++.+++..++...... ....+.+.|+|++|+|||++|+.+++. .... ..++... .......
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~---~~~~~~~-~~~~~~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANE--MGVN---IRITSGP-ALEKPGD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHH--hCCC---eEEEecc-cccChHH
Confidence 3456677999999999999888653210 234578999999999999999999883 3222 1122211 1111111
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhc-------------------CCC
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKK-------------------GLH 162 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~-------------------~~~ 162 (639)
+..++..+ .+..+|++|+++.......+.+...+.. ..+
T Consensus 93 l~~~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 22222222 1234556666654321111112221111 112
Q ss_pred CcEEEEEccchHHHhhh-c-ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 163 GSKILITTRNESIASMM-R-STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 163 ~~~ilvTsr~~~~~~~~-~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.+-|..|++...+...+ . ....++++.++.++..+++.+.+...+.... .+.+..|++.|+|.|..+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHH
Confidence 34455566543322211 1 1346899999999999999988765443322 2347899999999997655555433
Q ss_pred cCCCCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHh-hhccCCCCCccChHHHHHHHHHcCCCCCcCcc
Q 006588 241 SSKKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFS-YCAVFPKDYNIEKDKLITLWMAQGYLSAEEDE 319 (639)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~-~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~ 319 (639)
. .|....... .-...........+...+..|+...+..+. .+..|..+ .+..+.+-... |.
T Consensus 227 ~------~~a~~~~~~-~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~------- 288 (328)
T PRK00080 227 R------DFAQVKGDG-VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE------- 288 (328)
T ss_pred H------HHHHHcCCC-CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC-------
Confidence 1 111111000 000111122223455667788888788776 66666544 45554443322 11
Q ss_pred cHHHHHHHHHH-HHHhccCccc
Q 006588 320 ELETIGEEYFG-ILASRSFFQE 340 (639)
Q Consensus 320 ~~~~~~~~~l~-~L~~~sli~~ 340 (639)
..+.++..++ .|++.+||+.
T Consensus 289 -~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 289 -ERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred -CcchHHHHhhHHHHHcCCccc
Confidence 1223455577 8999999964
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=1.6e-12 Score=132.89 Aligned_cols=207 Identities=20% Similarity=0.190 Sum_probs=102.5
Q ss_pred ceEEEEEEecccCc-------ccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCC---ceeEEecCCCCCCC---
Q 006588 390 KVRHLMLIIGKEST-------FPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELT---SLRALDFPSLYLPS--- 456 (639)
Q Consensus 390 ~~~~l~l~~~~~~~-------~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~---~L~~L~l~~n~~~~--- 456 (639)
.++++.+..+.... ++..+.++++|+.|++.+|.+. +..+. .+..+. +|+.|++++|.+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-----PDGCG-VLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-----hhHHH-HHHHHhccCcccEEEeeCCccchHHH
Confidence 35666665554331 2234555667777766655542 11111 123333 37777777766442
Q ss_pred -ccccccccc-CCCcEEeccCCCCc-----ccchhhhcCCCccEEecCCCCCcc----ccchhhhhcccCceeecCCCCc
Q 006588 457 -EIPRNIKKL-IHLRYLNLSGQKIE-----KLPEALCELYNLEKLDICSCSCLK----ELPEGIGKLINMKYLLNRDTDS 525 (639)
Q Consensus 457 -~~p~~~~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~n~~ 525 (639)
.+...+..+ ++|+.|++++|.++ .++..+..+.+|+.|++++|.+.+ .++..+..+++|++|++++|.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 122334444 66677777777666 233345556667777777666442 2233344445677777777654
Q ss_pred ccc----ccccCCCCcCCccccceEecCCCccCCCccCCcc-----cccCCCcCCceeeeCcCCCCChhhhccccccccc
Q 006588 526 VRY----MPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLE-----SLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKK 596 (639)
Q Consensus 526 ~~~----~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~ 596 (639)
... ++..+..+++|++|++. ++.+.......+. ..+.|+.|++.+|.+... ........+..++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls----~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~---~~~~l~~~~~~~~ 278 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLG----DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD---GAKDLAEVLAEKE 278 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecC----CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH---HHHHHHHHHhcCC
Confidence 322 23334455566666532 2222211111111 125666777666654211 1111222344456
Q ss_pred CcceEEEEeccCC
Q 006588 597 YLFSLTLKFDEKE 609 (639)
Q Consensus 597 ~L~~L~l~~~~~~ 609 (639)
+|+.|+++.|.++
T Consensus 279 ~L~~l~l~~N~l~ 291 (319)
T cd00116 279 SLLELDLRGNKFG 291 (319)
T ss_pred CccEEECCCCCCc
Confidence 6777777766644
No 24
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=1.2e-10 Score=117.96 Aligned_cols=262 Identities=18% Similarity=0.169 Sum_probs=138.8
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
.+|||+++++++|..++...... ......++|+|++|+|||+||+.+++. ....+ ..+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHH
Confidence 46999999999999998643220 123456899999999999999999873 32221 12211111111 1111222
Q ss_pred HHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhh-------------------cCCCCcEEE
Q 006588 107 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLK-------------------KGLHGSKIL 167 (639)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~-------------------~~~~~~~il 167 (639)
..+. ...+|++|+++.......+.+...+. ...+.+.|.
T Consensus 77 ~~~~----------------------~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 77 TNLE----------------------EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred Hhcc----------------------cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 2221 22355555554332211111211111 112244555
Q ss_pred EEccchHHHhhh-c-ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCC
Q 006588 168 ITTRNESIASMM-R-STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKT 245 (639)
Q Consensus 168 vTsr~~~~~~~~-~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 245 (639)
.|++...+...+ . ....+.+..++.++..+++.+.+........ .+.+..|++.|+|.|..+..++..+.
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~~---- 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRVR---- 206 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHHH----
Confidence 666654332221 1 2346799999999999999988764333221 23478899999999977655554331
Q ss_pred HHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHh-hhccCCCCCccChHHHHHHHHHcCCCCCcCcccHHHH
Q 006588 246 EEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFS-YCAVFPKDYNIEKDKLITLWMAQGYLSAEEDEELETI 324 (639)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~-~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~ 324 (639)
.......... -..+........+...+..++.+.+..+. .++.+..+ .+....+.... |. ....
T Consensus 207 --~~a~~~~~~~-it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~ 271 (305)
T TIGR00635 207 --DFAQVRGQKI-INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADT 271 (305)
T ss_pred --HHHHHcCCCC-cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------Ccch
Confidence 0000011000 00011111122245567788888887777 44666433 44444433322 11 1123
Q ss_pred HHHHHH-HHHhccCccc
Q 006588 325 GEEYFG-ILASRSFFQE 340 (639)
Q Consensus 325 ~~~~l~-~L~~~sli~~ 340 (639)
++..++ .|++.++|..
T Consensus 272 ~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 272 IEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHhhhHHHHHcCCccc
Confidence 455578 6999999963
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=5.1e-13 Score=142.54 Aligned_cols=176 Identities=20% Similarity=0.214 Sum_probs=99.2
Q ss_pred cCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 386 SLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
..+..++.+.++++.+..+|++++.+.+|..+.+..|.+ ..+|.. +..+.+|+.|.+..|. .+.+|....++
T Consensus 238 p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l------~~lp~r-i~~~~~L~~l~~~~ne-l~yip~~le~~ 309 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL------VALPLR-ISRITSLVSLSAAYNE-LEYIPPFLEGL 309 (1081)
T ss_pred cccccceeeecchhhhhcchHHHHhcccceEecccchhH------HhhHHH-HhhhhhHHHHHhhhhh-hhhCCCccccc
Confidence 345788999999999999999999999999997666663 344444 2334444444444444 33344434444
Q ss_pred CCCcEEeccCCCCcccc--------------------------------------------------hhhhcCCCccEEe
Q 006588 466 IHLRYLNLSGQKIEKLP--------------------------------------------------EALCELYNLEKLD 495 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~lp--------------------------------------------------~~i~~l~~L~~L~ 495 (639)
.+|+.|+|..|.|..+| +.+-++++|+.|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 44444444444443333 2344455666666
Q ss_pred cCCCCCccccchh-hhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCcee
Q 006588 496 ICSCSCLKELPEG-IGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICG 574 (639)
Q Consensus 496 l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 574 (639)
|++|+ ++.+|.. +.++..|++|++|||. +..+|..+..+..|++|. ..+|. -..+| .+..++.|+.++++.
T Consensus 390 LsyNr-L~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~----ahsN~-l~~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 390 LSYNR-LNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLR----AHSNQ-LLSFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred ecccc-cccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHh----hcCCc-eeech-hhhhcCcceEEeccc
Confidence 66655 5555543 3555566666666663 455565555555666554 22221 11233 455566666666655
Q ss_pred eeC
Q 006588 575 IRG 577 (639)
Q Consensus 575 n~~ 577 (639)
|.+
T Consensus 462 N~L 464 (1081)
T KOG0618|consen 462 NNL 464 (1081)
T ss_pred chh
Confidence 553
No 26
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=1.4e-09 Score=117.09 Aligned_cols=257 Identities=13% Similarity=0.081 Sum_probs=144.2
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH---hcC--CceEEEEeCCCCch
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK---RQF--DKILWVCVSETFDE 98 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f--~~~~wv~~~~~~~~ 98 (639)
..|..+.||++|+++|...|...-.+ .....++.|+|++|+|||++++.+++..... ... ..+++|++....+.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 34568999999999999999865531 2234677899999999999999998753221 111 24678999888888
Q ss_pred HHHHHHHHHHccCCCCC-cccHHHHHHHHHHhcC---CceEEEEEeCCCCCCccCchhhhHhhhcC-CCCcEEEE--Ecc
Q 006588 99 FRIAKAMLEALTGSTSN-LDALQSLLISIDESIA---GKRFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGSKILI--TTR 171 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~---~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~~ilv--Tsr 171 (639)
..++..|..++....+. .....+....+...+. ....+||||+++......-+.+...+.+. ..+++++| ++.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 89999999988544322 1223333444443331 23469999999875432222333333322 23444433 343
Q ss_pred chHH----Hhhhc---ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCC
Q 006588 172 NESI----ASMMR---STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKK 244 (639)
Q Consensus 172 ~~~~----~~~~~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~ 244 (639)
..+. ...+. ....+...+++.++..+++..++...........++-+|+.++...|-.=.||.++-.+.....
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 2211 11111 1335778999999999999998864322222223333333333333333345554443332110
Q ss_pred ----CHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhcc
Q 006588 245 ----TEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAV 291 (639)
Q Consensus 245 ----~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~ 291 (639)
..+.-..+.. .-....+...+..||.+.+.+|..+..
T Consensus 991 gskVT~eHVrkAle----------eiE~srI~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 991 GQKIVPRDITEATN----------QLFDSPLTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred CCccCHHHHHHHHH----------HHHhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111110 001223555667888888877765444
No 27
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-09 Score=107.45 Aligned_cols=307 Identities=15% Similarity=0.089 Sum_probs=176.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
+...|..+.+|+++++++...|...-. +..+..+.|+|++|+|||+.++.+++..+....-..+++|+|....+..++
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 344455699999999999999887776 444455999999999999999999985332222223799999999999999
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcC--CceEEEEEeCCCCCCccCchhhhHhhhcCCC-CcE--EEEEccchHHH
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIA--GKRFLLVLDDVWDGDYIKWEPFYHCLKKGLH-GSK--ILITTRNESIA 176 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~-~~~--ilvTsr~~~~~ 176 (639)
+..|+.+++....-.....+....+.+.+. ++.+++|||+++......-+.+...+..... .++ ++..+.+....
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 999999997444444555666666666554 4789999999987643332333333333322 233 33344433222
Q ss_pred h--------hhcccceEECCCCCHHHHHHHHHHHhhCCC-CchhhhHHHHHHHHHHHHcCCc-hhHHHHHHhhhcCCCCH
Q 006588 177 S--------MMRSTDVISIKELAEEECWALFKQLAFFGR-STEECEKLEQIGQRIARKCKGL-PLAAKTMGGLMSSKKTE 246 (639)
Q Consensus 177 ~--------~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l~~~~~~ 246 (639)
. ..+ ...+...+.+.+|-..++..++.... ...-.....+++..++...+|- =.||.++..... .
T Consensus 170 ~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e----i 244 (366)
T COG1474 170 DYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE----I 244 (366)
T ss_pred HHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH----H
Confidence 2 222 33588999999999999988874321 1122233334445555555542 233333322211 1
Q ss_pred HHHHHHHcCcccchhhcc-ccchhhHHhhhhCCchhhHHHHhhhccCCCCCccChHHHHH--HHHHcCCCCCcCcccHHH
Q 006588 247 EEWKRILNSDLWKVEEIE-KGFLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLIT--LWMAQGYLSAEEDEELET 323 (639)
Q Consensus 247 ~~~~~~l~~~~~~~~~~~-~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~--~w~~~g~~~~~~~~~~~~ 323 (639)
.+|...-.-......... .-=.......+..|+.+.+..++..+... ..+....+.. .++.+.+.. ...
T Consensus 245 Ae~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~------~~~ 316 (366)
T COG1474 245 AEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT------SQR 316 (366)
T ss_pred HHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc------hHH
Confidence 111100000000000000 01122355568889988888776666553 2233333322 222222211 222
Q ss_pred HHHHHHHHHHhccCcccccc
Q 006588 324 IGEEYFGILASRSFFQEFEK 343 (639)
Q Consensus 324 ~~~~~l~~L~~~sli~~~~~ 343 (639)
....++..|...|+|.....
T Consensus 317 ~~~~ii~~L~~lgiv~~~~~ 336 (366)
T COG1474 317 RFSDIISELEGLGIVSASLI 336 (366)
T ss_pred HHHHHHHHHHhcCeEEeeec
Confidence 34456788888888865443
No 28
>PF05729 NACHT: NACHT domain
Probab=99.19 E-value=2.1e-10 Score=104.89 Aligned_cols=144 Identities=19% Similarity=0.306 Sum_probs=91.3
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhc----CCceEEEEeCCCCchH---HHHHHHHHHccCCCCCcccHHHHHHHHH
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQ----FDKILWVCVSETFDEF---RIAKAMLEALTGSTSNLDALQSLLISID 127 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 127 (639)
|++.|+|.+|+||||+++.++........ +..++|+++.+..... .+...+........ .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH-
Confidence 57999999999999999999886433332 3456677765544332 34444444443222 1112111111
Q ss_pred HhcCCceEEEEEeCCCCCCccC-------chh-hhHhhhc-CCCCcEEEEEccchHH---HhhhcccceEECCCCCHHHH
Q 006588 128 ESIAGKRFLLVLDDVWDGDYIK-------WEP-FYHCLKK-GLHGSKILITTRNESI---ASMMRSTDVISIKELAEEEC 195 (639)
Q Consensus 128 ~~l~~~~~LlvlDd~~~~~~~~-------~~~-l~~~l~~-~~~~~~ilvTsr~~~~---~~~~~~~~~~~l~~l~~~ea 195 (639)
....++++||||+++...... +.. +...+.. ..++++++||+|.... .........+++.+|+.++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 125689999999998754322 222 3333333 3568999999998654 33334456899999999999
Q ss_pred HHHHHHHh
Q 006588 196 WALFKQLA 203 (639)
Q Consensus 196 ~~l~~~~~ 203 (639)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=4.2e-12 Score=123.21 Aligned_cols=144 Identities=20% Similarity=0.217 Sum_probs=113.7
Q ss_pred EecCCcccccccccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCC
Q 006588 373 LEINGSEELNVKKSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPS 451 (639)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 451 (639)
....+-....++...++....|.+..|.++.+| ..|+.+++|+.|+++.|. +..|-+..|.++..|..|-+.+
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhc
Confidence 334444444455778899999999999999988 678999999999888777 4566677799999999887777
Q ss_pred -CCCCCccc-ccccccCCCcEEeccCCCCcccc-hhhhcCCCccEEecCCCCCccccch-hhhhcccCceeecCCCC
Q 006588 452 -LYLPSEIP-RNIKKLIHLRYLNLSGQKIEKLP-EALCELYNLEKLDICSCSCLKELPE-GIGKLINMKYLLNRDTD 524 (639)
Q Consensus 452 -n~~~~~~p-~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~ 524 (639)
|. +..+| ..|+++..|+.|.+.-|++..++ ..+..|++|..|.+..|. ...++. ++..+.+++++.+..|+
T Consensus 125 ~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 125 NNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred CCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 66 55565 66888999999999999988554 467889999999988877 666766 57788888888887776
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.2e-10 Score=128.91 Aligned_cols=162 Identities=22% Similarity=0.329 Sum_probs=105.0
Q ss_pred CCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccC
Q 006588 387 LDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLI 466 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 466 (639)
..+.++.+.+.+|.+..+|..+. ++|+.|.+.+|.+. .+|..+ ..+|+.|++++|.+ ..+|..+. .
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt------sLP~~l---~~~L~~L~Ls~N~L-~~LP~~l~--s 262 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT------SIPATL---PDTIQEMELSINRI-TELPERLP--S 262 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc------cCChhh---hccccEEECcCCcc-CcCChhHh--C
Confidence 44678888888888888886654 58888888777643 345442 24688888888884 46676554 4
Q ss_pred CCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 467 HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
+|+.|++++|+++.+|..+. .+|+.|++++|+ +..+|..+. ++|+.|++++|.+ ..+|..+ .++|++|.+
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~L-- 332 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSL-TALPETL--PPGLKTLEA-- 332 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCcc-ccCCccc--cccceeccc--
Confidence 78888888888888877654 478888888887 445665432 3577777777754 3455433 245666652
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeC
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRG 577 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 577 (639)
.+|.+.. +|..+. ++|+.|++++|.+
T Consensus 333 --s~N~Lt~-LP~~l~--~sL~~L~Ls~N~L 358 (754)
T PRK15370 333 --GENALTS-LPASLP--PELQVLDVSKNQI 358 (754)
T ss_pred --cCCcccc-CChhhc--CcccEEECCCCCC
Confidence 2222222 343332 4666666666654
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=5.9e-11 Score=131.29 Aligned_cols=190 Identities=18% Similarity=0.246 Sum_probs=93.5
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
.+++.|.+.+|.+..+|..+. ++|+.|.+.+|.+ ..+|..+. .+|+.|++++|.+. .+|..+. .+|
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L------~~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI------TELPERLP---SALQSLDLFHNKIS-CLPENLP--EEL 285 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCcc------CcCChhHh---CCCCEEECcCCccC-ccccccC--CCC
Confidence 456666666666665554433 3556665555543 13343321 35566666665533 3444332 355
Q ss_pred cEEeccCCCCcccchhhh-------------------cCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccc
Q 006588 469 RYLNLSGQKIEKLPEALC-------------------ELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYM 529 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~-------------------~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~ 529 (639)
+.|++++|+++.+|..+. ..++|+.|++++|. +..+|..+. ++|+.|++++|.+ ..+
T Consensus 286 ~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~L-~~L 361 (754)
T PRK15370 286 RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQI-TVL 361 (754)
T ss_pred cEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhc--CcccEEECCCCCC-CcC
Confidence 666666665555543322 11355555555555 333554332 4566666666653 345
Q ss_pred cccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 530 PVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 530 p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
|..+ .++|++|+ ..+|.+. .+|..+. +.|+.|++++|.+. .+|. .+...+..++++..|+|..|.++
T Consensus 362 P~~l--p~~L~~Ld----Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~---sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 362 PETL--PPTITTLD----VSRNALT-NLPENLP--AALQIMQASRNNLV-RLPE---SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Chhh--cCCcCEEE----CCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCch---hHHHHhhcCCCccEEEeeCCCcc
Confidence 5433 23555555 2222222 2333332 24666666666543 2232 11122344567778888777644
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=2.2e-11 Score=124.40 Aligned_cols=186 Identities=18% Similarity=0.105 Sum_probs=88.7
Q ss_pred eEEEEEEeccc-----CcccccccCCCCccEEEeeccccCC-CCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccc
Q 006588 391 VRHLMLIIGKE-----STFPISTCRTKRIRSLLIECRRFDH-SSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKK 464 (639)
Q Consensus 391 ~~~l~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 464 (639)
++.+.+..+.+ ..++..+...++++.+.+.++.+.. ......++ ..+..+++|+.|++++|.+....+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 44555555544 2244445555666666665555431 11111222 22445666666666666654444444444
Q ss_pred cCC---CcEEeccCCCCc-----ccchhhhcC-CCccEEecCCCCCcc----ccchhhhhcccCceeecCCCCccc----
Q 006588 465 LIH---LRYLNLSGQKIE-----KLPEALCEL-YNLEKLDICSCSCLK----ELPEGIGKLINMKYLLNRDTDSVR---- 527 (639)
Q Consensus 465 l~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~n~~~~---- 527 (639)
+.+ |+.|++++|.++ .+...+..+ ++|+.|++++|.+.+ .++..+..+++|++|++++|.+.+
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 443 666666666655 122334444 666666666666442 223334445566666666665442
Q ss_pred cccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeC
Q 006588 528 YMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRG 577 (639)
Q Consensus 528 ~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 577 (639)
.++..+..+++|++|++.++.........++..+..+++|+.|++++|.+
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 12223333445665553222111100011223344556666666666653
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.11 E-value=3.6e-12 Score=136.17 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=153.7
Q ss_pred ceeEEecCCcccccccccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHH----------
Q 006588 369 ECLSLEINGSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELF---------- 438 (639)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~---------- 438 (639)
+.+....+.....+........++.++...++.+.+|+....++.|++|++..|.+.. +|+.++
T Consensus 267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~------lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS------LPDNFLAVLNASLNTL 340 (1081)
T ss_pred eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc------cchHHHhhhhHHHHHH
Confidence 3444444444444444445556666667777777777766777777777777766432 222211
Q ss_pred ---------------hhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchh-hhcCCCccEEecCCCCCc
Q 006588 439 ---------------RELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCL 502 (639)
Q Consensus 439 ---------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 502 (639)
..++.|+.|.+.+|.+....-+.+-++.+|+.|+|++|++..+|.+ +.++..|+.|+|+||. +
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L 419 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-L 419 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-h
Confidence 1234567778888887777666788899999999999999999975 6899999999999999 8
Q ss_pred cccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCC
Q 006588 503 KELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVS 582 (639)
Q Consensus 503 ~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 582 (639)
..+|.++..+..|++|...+|. +..+| .+..+++|+.++ ++.|+.-...+|..... ++|++|++++|.....
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lD---lS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~-- 491 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLD---LSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVF-- 491 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEe---cccchhhhhhhhhhCCC-cccceeeccCCccccc--
Confidence 8999999999999999999996 56788 677888888887 33343333344444433 8999999999974211
Q ss_pred ChhhhcccccccccCcceEEEEec
Q 006588 583 DVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 583 ~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
+ ...|..++++...+++-+
T Consensus 492 d-----~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 492 D-----HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred c-----hhhhHHhhhhhheecccC
Confidence 1 123566677777777755
No 34
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=8.5e-09 Score=110.83 Aligned_cols=199 Identities=15% Similarity=0.157 Sum_probs=123.3
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+++...-..... ...+..-..+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHH
Confidence 4445678999999999999997433 457788999999999999998877321000000 0111111122
Q ss_pred HHHHHH-----ccCCCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEA-----LTGSTSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..|... +.........+++..+.+... ..++.-++|||+++......++.+++.+.....++++|++|.+.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 222110 000000011122222222211 12455689999999987777888999988877788888888764
Q ss_pred H-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch-hHHHHHH
Q 006588 174 S-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTMG 237 (639)
Q Consensus 174 ~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 237 (639)
. + ....+....+.++.++.++..+.+.+.....+...+ .+....|++.++|.. -++.++-
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3 2 233345678999999999999999887754333221 233678999998866 4555543
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.07 E-value=7e-10 Score=122.21 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=69.2
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
..+++.|.+.+|.+..+|.. .++|+.|++..|.+ ..+|. .+.+|+.|++++|. ...+|.. +++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L------~~Lp~----lp~~L~~L~Ls~N~-Lt~LP~~---p~~ 303 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL------THLPA----LPSGLCKLWIFGNQ-LTSLPVL---PPG 303 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCCch------hhhhh----chhhcCEEECcCCc-ccccccc---ccc
Confidence 45677777777766666632 35666666666553 23332 23567778888887 4455542 357
Q ss_pred CcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccc
Q 006588 468 LRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPV 531 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~ 531 (639)
|+.|++++|+++.+|... .+|+.|++++|. +..+|.. ..+|++|++++|.+ ..+|.
T Consensus 304 L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~L-s~LP~ 359 (788)
T PRK15387 304 LQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQL-ASLPT 359 (788)
T ss_pred cceeECCCCccccCCCCc---ccccccccccCc-ccccccc---ccccceEecCCCcc-CCCCC
Confidence 888888888888776522 235555555555 3334431 13566666666643 33443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.1e-11 Score=118.85 Aligned_cols=209 Identities=18% Similarity=0.107 Sum_probs=118.1
Q ss_pred cCCCceEEEEEEecccCccc--ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccc-c
Q 006588 386 SLDEKVRHLMLIIGKESTFP--ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRN-I 462 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~ 462 (639)
+-.++++.+.+.+......+ .-...|++++.|+++.|-++ .-....++..++++|+.|+++.|.+....... -
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH----hHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 44467777777777655544 35667888888877777653 22234455677888888888888754322211 1
Q ss_pred cccCCCcEEeccCCCCc--ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccc--ccCCCCcC
Q 006588 463 KKLIHLRYLNLSGQKIE--KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMP--VGIARLKS 538 (639)
Q Consensus 463 ~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~ 538 (639)
..+++|+.|.|+.|.++ ++......+|+|+.|+|..|............+..|+.|++++|.+.. ++ ...+.++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccc
Confidence 24677888888888877 444445567788888887774333323334556677888888876543 23 23455555
Q ss_pred CccccceEecCCCccCCCccCC-----cccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 539 LRTLEEVRVSGRGCLDGRKACR-----LESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 539 L~~L~~~~~~~~~~~~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
|..|++..+. .-+...|+. ...+++|+.|+++.|.+ ...+.+. .+..+++|+.|.+..|.+
T Consensus 273 L~~Lnls~tg---i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~-----~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 273 LNQLNLSSTG---IASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLN-----HLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhhhccccC---cchhcCCCccchhhhcccccceeeecccCcc-ccccccc-----hhhccchhhhhhcccccc
Confidence 5555532222 112222322 34556666666666653 1112211 133345555555554443
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.4e-09 Score=106.93 Aligned_cols=172 Identities=22% Similarity=0.282 Sum_probs=102.4
Q ss_pred CCcccchhhH---HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGER---NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~---~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
+++||.+..+ .-|.+++. ......+.+|||||+||||||+.++. .....| ..++...+.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~g----- 85 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSG----- 85 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEecccccc-----
Confidence 3455554333 34555555 44678899999999999999998877 344443 222211111
Q ss_pred HHHHHccCCCCCcccHHHHHHHH-HHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch--H---HHh
Q 006588 104 AMLEALTGSTSNLDALQSLLISI-DESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE--S---IAS 177 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~--~---~~~ 177 (639)
..++.+.++.- +....+++++|++|+|+..+..+.+.++..+.+ |..++|-+..+ . ...
T Consensus 86 ------------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~---G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 86 ------------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN---GTIILIGATTENPSFELNPA 150 (436)
T ss_pred ------------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC---CeEEEEeccCCCCCeeecHH
Confidence 12222222222 122347899999999988766555555544444 77666654332 2 122
Q ss_pred hhcccceEECCCCCHHHHHHHHHHHhhCCCCchh--hh-HHHHHHHHHHHHcCCchh
Q 006588 178 MMRSTDVISIKELAEEECWALFKQLAFFGRSTEE--CE-KLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 178 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~g~Pl 231 (639)
..+...++.+++|+.++..+++.+.......... .. -..+....++..++|--.
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 2355779999999999999999884432221111 00 113346778888888764
No 38
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.6e-08 Score=104.22 Aligned_cols=194 Identities=18% Similarity=0.161 Sum_probs=117.1
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.+++|.+..++.|.+.+.... -++.+.++|++|+||||+|+.+++.. ...... ...++......
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l--~c~~~~-----~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSL--NCQNGI-----TSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHh--cCCCCC-----CCCCCCCCHHH
Confidence 3455678999999999999997433 45778999999999999999987732 111000 00011111111
Q ss_pred HHHHHHccC-----CCCCcccHHH---HHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTG-----STSNLDALQS---LLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.++...... ........++ ..+.+... ..+++-++|+|+++......++.+++.+......+++|++|.+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 222111100 0000011222 21111110 12345699999998886656777888888777777777777553
Q ss_pred H-HHh-hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 174 S-IAS-MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 174 ~-~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
. +.. ..+....+++.+++.++..+++...+...+.... .+.+..|++.++|.|..
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRD 216 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 2 322 2334568999999999999998886644332111 23367899999998853
No 39
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=7.6e-09 Score=113.40 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=121.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..+..|.+++.... -...+.++|++|+||||+|+.+++...-...... ..+.....+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHH
Confidence 3445679999999999999997433 4567799999999999999999874210000000 001111111
Q ss_pred HHHHHHcc-----CCC---CCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALT-----GST---SNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~-----~~~---~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+..... ... .+...+.++...+.. ...++.-++|||+++.+.....+.+++.+......+++|++|.+.
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 11111100 000 011122222222221 123567799999999988778888999998877778777776653
Q ss_pred H-HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHH
Q 006588 174 S-IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 234 (639)
Q Consensus 174 ~-~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 234 (639)
. +. ........+++.+++.++..+++...+....... ..+.+..|++.++|.|.-+.
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 2 22 3334457899999999999999988764332221 12347889999999886433
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.98 E-value=6.7e-10 Score=97.14 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=80.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHh---cCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKR---QFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES 129 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 129 (639)
+.+++.|+|++|+|||++++.+++...... .-..++|+++....+...+...++.+++.......+.++..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 568899999999999999999988532111 14567899998888999999999999998776545666666777766
Q ss_pred cCCce-EEEEEeCCCCC-CccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 130 IAGKR-FLLVLDDVWDG-DYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 130 l~~~~-~LlvlDd~~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
+...+ .+||+|+++.. +...++.+.. +.+ ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 66544 59999999876 4333333433 223 566678877765
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.98 E-value=8.6e-09 Score=94.89 Aligned_cols=188 Identities=20% Similarity=0.237 Sum_probs=103.7
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
.-.|..-.+|||.+..++.+.-++..... ..+....+.+|||||+||||||..+++. ....| .+.+... ..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~---~~~sg~~-i~-- 87 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF---KITSGPA-IE-- 87 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--E---EEEECCC-----
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCe---Eeccchh-hh--
Confidence 34556677899999999998877654321 0235678999999999999999988773 33333 1222211 00
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC------------------
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL------------------ 161 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~------------------ 161 (639)
...++...+.. + +++.+|++|+++.......+.+..++.++.
T Consensus 88 ------------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 ------------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp ------------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred ------------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 01111111211 1 234588889998876555555666555421
Q ss_pred -CCcEEEEEccchHHHhhhcc-cce-EECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHh
Q 006588 162 -HGSKILITTRNESIASMMRS-TDV-ISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGG 238 (639)
Q Consensus 162 -~~~~ilvTsr~~~~~~~~~~-~~~-~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 238 (639)
+.+-|=.|||...+...+.. ... .+++-++.+|..+++.+.+..-+...+ .+.+.+|++.+.|-|.-..-+-+
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~----~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID----EDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-----HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHhcCCChHHHHHHHH
Confidence 23345556665444433322 333 479999999999999987765555433 34489999999999975444444
Q ss_pred hh
Q 006588 239 LM 240 (639)
Q Consensus 239 ~l 240 (639)
.+
T Consensus 224 rv 225 (233)
T PF05496_consen 224 RV 225 (233)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 42
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.98 E-value=9.8e-09 Score=105.68 Aligned_cols=203 Identities=13% Similarity=0.086 Sum_probs=116.5
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-C-CceEEEEeCCCCch-
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-F-DKILWVCVSETFDE- 98 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f-~~~~wv~~~~~~~~- 98 (639)
.|..-.+++|++..+++|.+++... ..+.+.++|++|+|||++|+.+++. .... + ...+++++.+....
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhhhcc
Confidence 4444567999999999999998743 3346889999999999999998874 2222 1 23455554331100
Q ss_pred -HHHHH--HHHHHccCC-CCCcccHHHHHHHHHHh---c--CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEE
Q 006588 99 -FRIAK--AMLEALTGS-TSNLDALQSLLISIDES---I--AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILIT 169 (639)
Q Consensus 99 -~~~~~--~il~~l~~~-~~~~~~~~~~~~~l~~~---l--~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvT 169 (639)
..+.. .....+... .......+.....+... . ...+-+||+||++.........+...+......+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~ 161 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA 161 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 00000 000000000 00001111111212111 1 234458999999776544445566666655566778877
Q ss_pred ccchH-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 170 TRNES-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 170 sr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
+.... + .........+++.+++.++..+++...+...+.... .+.++.+++.++|.+-.+...
T Consensus 162 ~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 162 TRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred eCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 75432 2 122233567899999999999999887654333222 234788899998887655443
No 43
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.2e-08 Score=108.49 Aligned_cols=195 Identities=17% Similarity=0.151 Sum_probs=121.0
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+...+.|.+++.... -.+.+.++|+.|+||||+|+.+++.. .... ++. ...++.-..+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~L--nC~~----~~~-~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCL--NCET----GVT-STPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHh--CCCc----CCC-CCCCccCHHH
Confidence 3455678999999999999997443 46788999999999999999887732 1100 110 0111111222
Q ss_pred HHHHHHccC-----CCCCcccHHHHHHHHHH----hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTG-----STSNLDALQSLLISIDE----SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~-----~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+.+...-+. .......+++..+.+.. ...++.-++|+|+++.......+.+++.+.....++++|++|.+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 222211000 00001112222221111 123456799999999887677788888888877777888877653
Q ss_pred H-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 174 S-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 174 ~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
. + .........+++.+++.++..+.+...+...+.... .+.+..|++.++|-+..+
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 2 2 223345678999999999999999887754433222 233678999999987433
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.97 E-value=1.4e-08 Score=97.56 Aligned_cols=157 Identities=16% Similarity=0.222 Sum_probs=95.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
..+.+.|||++|+|||+|+.++++. ...+...+.|+++... ......+ .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~---------------------~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAV---------------------LENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHH---------------------Hhhcc-
Confidence 3467999999999999999999984 4444556778876421 0011111 11111
Q ss_pred ceEEEEEeCCCCCC-ccCch-hhhHhhhcC-CCCcEE-EEEccc---------hHHHhhhcccceEECCCCCHHHHHHHH
Q 006588 133 KRFLLVLDDVWDGD-YIKWE-PFYHCLKKG-LHGSKI-LITTRN---------ESIASMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 133 ~~~LlvlDd~~~~~-~~~~~-~l~~~l~~~-~~~~~i-lvTsr~---------~~~~~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
+.-+|||||++... ...|+ .+...+... ..+..+ |+|++. +.+...+.....+++.+++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998642 12233 344444432 234445 455543 234444445668999999999999999
Q ss_pred HHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 200 KQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.+.+........ .+....|++.+.|..-.+..+-..+
T Consensus 171 ~~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGIELS----DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 988764433222 2336778888887777666554444
No 45
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.97 E-value=3.8e-09 Score=116.51 Aligned_cols=197 Identities=17% Similarity=0.122 Sum_probs=111.5
Q ss_pred eeEEecCCcccccccccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEec
Q 006588 370 CLSLEINGSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDF 449 (639)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l 449 (639)
.+.+..+.....+ .....++.|.+.++.+..+|.. +++|..|++.+|.+. .+|. .+++|+.|++
T Consensus 246 ~LdLs~N~LtsLP---~lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt------~LP~----~p~~L~~LdL 309 (788)
T PRK15387 246 TLEVSGNQLTSLP---VLPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLT------SLPV----LPPGLQELSV 309 (788)
T ss_pred EEEecCCccCccc---CcccccceeeccCCchhhhhhc---hhhcCEEECcCCccc------cccc----cccccceeEC
Confidence 3444444444443 2457899999999988888753 357888888888743 3443 2478999999
Q ss_pred CCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhh-----------------hc
Q 006588 450 PSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIG-----------------KL 512 (639)
Q Consensus 450 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~-----------------~l 512 (639)
++|.+.+ +|... .+|+.|++++|.++.+|.. ..+|+.|+|++|+ +..+|.... ..
T Consensus 310 S~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~ 381 (788)
T PRK15387 310 SDNQLAS-LPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALP 381 (788)
T ss_pred CCCcccc-CCCCc---ccccccccccCcccccccc---ccccceEecCCCc-cCCCCCCCcccceehhhccccccCcccc
Confidence 9998543 44321 2344555555555544421 1245555555544 223332110 12
Q ss_pred ccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhccccc
Q 006588 513 INMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLEL 592 (639)
Q Consensus 513 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 592 (639)
.+|+.|++++|.+ ..+|... ++|+.|+ .++|.+.. +|.. ..+|+.|++++|.+. .+|. .+
T Consensus 382 ~~L~~LdLs~N~L-t~LP~l~---s~L~~Ld----LS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~-------sl 441 (788)
T PRK15387 382 SGLKELIVSGNRL-TSLPVLP---SELKELM----VSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPE-------SL 441 (788)
T ss_pred cccceEEecCCcc-cCCCCcc---cCCCEEE----ccCCcCCC-CCcc---hhhhhhhhhccCccc-ccCh-------HH
Confidence 3456666666643 3344322 3455554 22333332 3432 235666777777643 3333 46
Q ss_pred ccccCcceEEEEeccCCc
Q 006588 593 DKKKYLFSLTLKFDEKEK 610 (639)
Q Consensus 593 ~~~~~L~~L~l~~~~~~~ 610 (639)
.++.+|+.|+|+.|.++.
T Consensus 442 ~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhccCCCeEECCCCCCCc
Confidence 778899999999998763
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.96 E-value=1.6e-08 Score=97.58 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=108.0
Q ss_pred CCCCccc--chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 25 DEEEICG--RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 25 ~~~~~vg--R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
.-.+|++ .+..++++.+++.. ...+.+.|+|++|+|||+||+.+++. ........+|+++..-....
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~--- 81 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD--- 81 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---
Confidence 3445553 45578888887652 24678999999999999999999874 33334456677665322100
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC--chhhhHhhhcC-CCCcEEEEEccchH-----
Q 006588 103 KAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK--WEPFYHCLKKG-LHGSKILITTRNES----- 174 (639)
Q Consensus 103 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~--~~~l~~~l~~~-~~~~~ilvTsr~~~----- 174 (639)
..++ ..+.. .-+|||||++...... ...+...+... ..+..+|+||+...
T Consensus 82 ~~~~---------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 82 PEVL---------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred HHHH---------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 0111 11122 2389999998754322 33444444331 23346888887432
Q ss_pred ----HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 175 ----IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 175 ----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
+...+.....+++.+++.++...++...+........ .+..+.|.+.+.|+|..+..+...+
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1112222457999999999999998876532222211 2336778888999998777665443
No 47
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1e-08 Score=108.79 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=120.8
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+++...-... +..--+ ....+.....+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC 84 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRAC 84 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHH
Confidence 3445578999999999999998544 4577899999999999999988773210000 000000 00011111222
Q ss_pred HHHHHH-----ccCCCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEA-----LTGSTSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..|... +.........+++..+.+... ..++.-++|||+++.......+.+++.+.....++++|++|.+.
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 222110 000000111223222222211 23456799999999988778888999888877777777776653
Q ss_pred -HH-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 174 -SI-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 174 -~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.+ .+..+....+.+..++.++..+.+.+.....+...+ .+....|++.++|.|...
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDA 222 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22 233344568999999999999998877653332221 223578899999998543
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=7.4e-11 Score=114.72 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=107.5
Q ss_pred ccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccC-CCC
Q 006588 400 KESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSG-QKI 478 (639)
Q Consensus 400 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-~~l 478 (639)
+..++|..++ +.-..+.+..|. +..+|+..|+.+++|+.||||+|.+...-|..|.++..|..|-+-+ |+|
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~------I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred CcccCcccCC--CcceEEEeccCC------cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4566775554 345567777777 5688999999999999999999997777899999999877766655 999
Q ss_pred cccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccc-cCCCCcCCcccc
Q 006588 479 EKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPV-GIARLKSLRTLE 543 (639)
Q Consensus 479 ~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~ 543 (639)
+.+|. .|++|..|+.|.+.-|.+.-.....++.+++|..|.+-.|. ...++. .+..+.++++++
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHh
Confidence 99997 57899999999999988665566778999999999998885 455665 466666666655
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=1.5e-11 Score=124.69 Aligned_cols=172 Identities=23% Similarity=0.286 Sum_probs=137.6
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
....+.+..|.+..+|..++.|-.|..+.+..|. ...+|.. ++.+..|++|+++.|. ...+|..++.|+ |+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------~r~ip~~-i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC------IRTIPEA-ICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LK 146 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc------ceecchh-hhhhhHHHHhhhccch-hhcCChhhhcCc-ce
Confidence 3455677788888899888888888888877776 4455666 7889999999999999 777888888877 89
Q ss_pred EEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecC
Q 006588 470 YLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSG 549 (639)
Q Consensus 470 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~ 549 (639)
.|-+++|+++.+|..++.++.|..||.+.|. +..+|.-++++.+|+.|+++.|. ...+|+.+..| .|..|+++ .
T Consensus 147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfS---c 220 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFS---C 220 (722)
T ss_pred eEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecc---c
Confidence 9999999999999999988999999999888 77788889999999999999886 46777777644 36666632 2
Q ss_pred CCccCCCccCCcccccCCCcCCceeeeCc
Q 006588 550 RGCLDGRKACRLESLKNLEHLQICGIRGL 578 (639)
Q Consensus 550 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 578 (639)
|+ ...+|-.|.+|+.|++|.|.+|.+.
T Consensus 221 Nk--is~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 221 NK--ISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Cc--eeecchhhhhhhhheeeeeccCCCC
Confidence 22 3457888999999999999888753
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-10 Score=113.41 Aligned_cols=211 Identities=18% Similarity=0.231 Sum_probs=144.5
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccc--ccccccCCCcEEeccCCCCcccchh-
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIP--RNIKKLIHLRYLNLSGQKIEKLPEA- 484 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~~~l~~lp~~- 484 (639)
=+++++|+.+.+.++...-.... .....|++++.|||+.|-+..+.| .....+++|+.|+++.|.+....++
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~-----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIE-----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhhHHhhhheeecCccccccchh-----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 35688999998888875322211 346679999999999999766544 5567799999999999998744332
Q ss_pred -hhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcc
Q 006588 485 -LCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLE 562 (639)
Q Consensus 485 -i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~ 562 (639)
-..+++|+.|.+++|.+.. .+-..+..+|+|..|++.+|...........-+..|++|+ +..++.+.-......+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld---Ls~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD---LSNNNLIDFDQGYKVG 268 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc---ccCCcccccccccccc
Confidence 3478899999999998753 3444456789999999999853222222222344555555 5566655555556778
Q ss_pred cccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCccee
Q 006588 563 SLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKELA 638 (639)
Q Consensus 563 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 638 (639)
.++.|+.|+++.+.+.+ +..+.........++++|+.|+++-|. +..|..++.+-.+++|+.|.
T Consensus 269 ~l~~L~~Lnls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~-----------I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENN-----------IRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cccchhhhhccccCcch-hcCCCccchhhhcccccceeeecccCc-----------cccccccchhhccchhhhhh
Confidence 89999999998887533 222222233345678899999997665 56677888888888887764
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=3.5e-11 Score=122.17 Aligned_cols=173 Identities=27% Similarity=0.285 Sum_probs=140.3
Q ss_pred CCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCC
Q 006588 411 TKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYN 490 (639)
Q Consensus 411 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~ 490 (639)
+..-...+++.|+ ...+|.. ++.+..|..+.+..|. ...+|..++++..|.+|+|+.|+++.+|..++.++
T Consensus 74 ltdt~~aDlsrNR------~~elp~~-~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp- 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNR------FSELPEE-ACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP- 144 (722)
T ss_pred ccchhhhhccccc------cccCchH-HHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-
Confidence 4444455566666 3356666 6788999999999999 67889899999999999999999999999998876
Q ss_pred ccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcC
Q 006588 491 LEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHL 570 (639)
Q Consensus 491 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 570 (639)
|+.|.+++|+ ++.+|..++.++.|..|+.+.|. +..+|..++++.+|+.|..... + ...+|..++.|+ |..|
T Consensus 145 Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn---~--l~~lp~El~~Lp-Li~l 216 (722)
T KOG0532|consen 145 LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN---H--LEDLPEELCSLP-LIRL 216 (722)
T ss_pred ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh---h--hhhCCHHHhCCc-eeee
Confidence 9999999888 88999999988999999999997 5678888999999999873322 2 223677777665 8889
Q ss_pred CceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 571 QICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 571 ~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
++++|++. . +..++++|.+|++|.|.+|-+
T Consensus 217 DfScNkis-~-------iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 217 DFSCNKIS-Y-------LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ecccCcee-e-------cchhhhhhhhheeeeeccCCC
Confidence 99999853 2 334699999999999998854
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.88 E-value=6.1e-08 Score=101.88 Aligned_cols=181 Identities=21% Similarity=0.260 Sum_probs=108.0
Q ss_pred cCCCCcccchhhHHH---HHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 24 IDEEEICGRVGERNA---LVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~---l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
..-++|||++..+.. |.+++... ....+.|+|++|+||||+|+.+++. .... |+.+........
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~ 75 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVK 75 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHH
Confidence 445579999988777 88888633 4567899999999999999998773 2222 222221111111
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEE--ccchH--H
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILIT--TRNES--I 175 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvT--sr~~~--~ 175 (639)
..+.+++. ... ...+++.+|++|+++.......+.+...+.. +..+++. |.+.. +
T Consensus 76 ~ir~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l 135 (413)
T PRK13342 76 DLREVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEV 135 (413)
T ss_pred HHHHHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhc
Confidence 11222211 111 1145778999999988754445555555543 4444443 33322 1
Q ss_pred -HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHh
Q 006588 176 -ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGG 238 (639)
Q Consensus 176 -~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 238 (639)
.........+.+.+++.++...++.+......... ..-..+..+.|++.++|.+..+.-+..
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 12233456899999999999999988653211100 011134467899999999976644433
No 53
>PTZ00202 tuzin; Provisional
Probab=98.88 E-value=2.5e-07 Score=93.09 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=102.8
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
...|.+...|+||++|+.+|...|.... ...+++++|.|++|+|||||++.+.... . ...++++.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l--~---~~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKE--G---MPAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcC--C---ceEEEECCC---CHH
Confidence 3466677799999999999999997544 2355799999999999999999887632 1 224444444 679
Q ss_pred HHHHHHHHHccCCCCCc--ccHHHHHHHHHHhc-C-CceEEEEEeCCCCCCc--cCchhhhHhhhcCCCCcEEEEEccch
Q 006588 100 RIAKAMLEALTGSTSNL--DALQSLLISIDESI-A-GKRFLLVLDDVWDGDY--IKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l-~-~~~~LlvlDd~~~~~~--~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+++..++.+|+...... +-.+.+.+.+.+.. . +++.+||+-= ...+. -.+++....-.+ -.-|+|++----+
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~d-rr~ch~v~evple 401 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACD-RRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHcc-chhheeeeeehHh
Confidence 99999999999743211 12233333333322 2 5555665532 11110 112232222222 2345565543222
Q ss_pred HHHh---hhcccceEECCCCCHHHHHHHHHHH
Q 006588 174 SIAS---MMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 174 ~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
.+.. .+.....+.++.|+.++|.++....
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2111 1223557899999999998887553
No 54
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.88 E-value=3.3e-09 Score=98.92 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=38.6
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
.||||++++++|...|. ... ....+.+.|+|++|+|||+|++++....... ...++.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~--~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~--~~~~~~~~~~~~ 63 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQ--SGSPRNLLLTGESGSGKTSLLRALLDRLAER--GGYVISINCDDS 63 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTS--S-----EEE-B-TTSSHHHHHHHHHHHHHHH--T--EEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHH-HHH--cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEEEecc
Confidence 48999999999999996 222 5567999999999999999999998853333 222444444433
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=3.4e-08 Score=106.22 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=118.5
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..+..|..++.... -.+.+.++|+.|+||||+|+.+++.. ...- ..-+..| .....+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~L--nC~~-~~~~~pC----g~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSL--NCEN-AQHGEPC----GVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHh--cccC-CCCCCCC----cccHHH
Confidence 4445678999999999999998543 45789999999999999999887731 1100 0000001 111111
Q ss_pred HHHHHH-----ccCCCCCcccHHHHHHHHHH---h-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEA-----LTGSTSNLDALQSLLISIDE---S-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~-----l~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+.+... +.........++...+.+.. . ..+++-++|||+++.......+.+++.+......+++|++|.+.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 111110 00000011112222222211 0 12456689999998876656777888888766677777777653
Q ss_pred H-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHH
Q 006588 174 S-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTM 236 (639)
Q Consensus 174 ~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 236 (639)
. + ....+....+.+..++.++..+.+.+.+...+...+ .+.+..|++.++|.+. ++..+
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 2 2 222234457888999999999999887754443222 2347889999999984 33444
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=6.6e-08 Score=102.83 Aligned_cols=200 Identities=19% Similarity=0.191 Sum_probs=117.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..-.+++|.+...+.|..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|.|-.. ........
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc-~~i~~~~h 84 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC-LAVRRGAH 84 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh-HHHhcCCC
Confidence 334568999999999999987543 456789999999999999999887432112122222222110 00000000
Q ss_pred HHHHHccCC-CCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch-HHHh-hh
Q 006588 104 AMLEALTGS-TSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE-SIAS-MM 179 (639)
Q Consensus 104 ~il~~l~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~-~~ 179 (639)
..+..+... ......+.++...+.. -..+++-++|+|+++......++.++..+......+.+|+++... .+.. ..
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 000000000 0001112222221211 122456689999998876666778888888776666666666543 2222 22
Q ss_pred cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 180 RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 180 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.....+++.+++.++..+++.+.+...+.... .+.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 34568999999999999999887754433221 234788999999999644
No 57
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=7.1e-08 Score=101.18 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=120.6
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhh------------------H-Hhc
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE------------------V-KRQ 83 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~------------------~-~~~ 83 (639)
|..-.++||.+..++.|.+++.... -++.+.++|+.|+||||+|+.++.... + .+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSN 83 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccC
Confidence 3455678999999999999987443 457899999999999999988876210 0 112
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCC
Q 006588 84 FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHG 163 (639)
Q Consensus 84 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~ 163 (639)
+..++.++..+..++.+ .+++.+..... -..++.-++|+|+++.......+.+++.+....+.
T Consensus 84 ~~Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 84 HPDVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred CCCEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 22334444433322222 11222221100 01245668999999887766788899999888778
Q ss_pred cEEEEEccch-HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 164 SKILITTRNE-SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 164 ~~ilvTsr~~-~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
+++|++|.+. .+. ........+++..++.++..+.+.+.+...+...+ .+.+..|++.++|.+.
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR 212 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMR 212 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 8777776542 332 23345678999999999999999888764443222 2336789999999885
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.86 E-value=3.4e-07 Score=98.24 Aligned_cols=252 Identities=14% Similarity=0.123 Sum_probs=143.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.|..-.+++|+++.+++|.+++..... ....+.+.|+|++|+||||+|+.+++.. . + .++-+++++..+...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el--~--~-~~ielnasd~r~~~~- 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY--G--W-EVIELNASDQRTADV- 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEcccccccHHH-
Confidence 445556799999999999999976543 3347899999999999999999998842 1 2 244455544333222
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc----cCchhhhHhhhcCCCCcEEEEEccchH-HH
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY----IKWEPFYHCLKKGLHGSKILITTRNES-IA 176 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~ 176 (639)
...++....... .....++-+||+|+++.... .....+...+... ++.||+|+.+.. ..
T Consensus 81 i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~ 144 (482)
T PRK04195 81 IERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccc
Confidence 222222211110 00113677999999987543 2345565555532 344666664421 11
Q ss_pred --hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCC---CCHHHHHH
Q 006588 177 --SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSK---KTEEEWKR 251 (639)
Q Consensus 177 --~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~---~~~~~~~~ 251 (639)
........+++..++..+....+...+...+.... .+....|++.++|....+......+..+ ...+....
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~ 220 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKT 220 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 22234568999999999999998887754433222 2347889999999876554443333332 12222222
Q ss_pred HHcCcccchhhccccchhhHHhhhhC-CchhhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCC
Q 006588 252 ILNSDLWKVEEIEKGFLTPLWLSYND-LPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSA 315 (639)
Q Consensus 252 ~l~~~~~~~~~~~~~l~~~l~~s~~~-L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~ 315 (639)
... ......++.++...+.. -.......+.. ..++. ..+..|+.+++...
T Consensus 221 ~~~------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 221 LGR------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred hhc------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 221 11223455555555542 11222222111 22333 45678999988764
No 59
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=7.2e-08 Score=102.66 Aligned_cols=188 Identities=18% Similarity=0.195 Sum_probs=120.6
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH-------------------Hhc
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV-------------------KRQ 83 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------------~~~ 83 (639)
|..-.+++|.+..++.|...+.... ....+.++|++|+||||+|+.+++...- .+.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~ 86 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNS 86 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCC
Confidence 3445678999999999999997433 4567899999999999999988773210 011
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCC
Q 006588 84 FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLH 162 (639)
Q Consensus 84 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~ 162 (639)
|..+++++......++ +..++.+.+.. -..+++-++|+|+++.......+.+++.+.....
T Consensus 87 ~~dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 87 FIDLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred CCceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 2223333222211111 12222222221 1235667999999998877778889999988777
Q ss_pred CcEEEEEccch-HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHHH
Q 006588 163 GSKILITTRNE-SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMG 237 (639)
Q Consensus 163 ~~~ilvTsr~~-~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 237 (639)
.+.+|++|.+. .+. ........+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|-+. |+..+-
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 77666555443 232 33445679999999999999888876643332221 2336789999999774 544443
No 60
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.86 E-value=6.8e-08 Score=98.62 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=111.7
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEe--CCCCchHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCV--SETFDEFR 100 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~ 100 (639)
|..-.+++|+++.++.+..++... ..+.+.|+|++|+|||++|+.+++. .........++.+ .......
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~--l~~~~~~~~~i~~~~~~~~~~~- 83 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARE--LYGEDWRENFLELNASDERGID- 83 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HcCCccccceEEeccccccchH-
Confidence 344456899999999999999743 2345799999999999999998773 2211111122322 2211111
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH--HHhh
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES--IASM 178 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~--~~~~ 178 (639)
.....+..+.... ......+-++++|+++.........+...+......+.+|+++.... ....
T Consensus 84 ~~~~~i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 84 VIRNKIKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred HHHHHHHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH
Confidence 1111111111000 00113456899999977654445567777766666677777764321 1112
Q ss_pred hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 179 MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 179 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
......+++.+++.++...++...+...+.... .+.+..+++.++|.+..+
T Consensus 150 ~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 150 QSRCAVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 233457899999999999999887754433222 234788999999998654
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=9.5e-08 Score=101.13 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=118.0
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC-ceEEEEeCCCCchHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD-KILWVCVSETFDEFR 100 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~ 100 (639)
.|..-.++||.+..+..|...+.... -.+.+.++|++|+||||+|+.+++...-..... .-.+..| ....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~ 86 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCT 86 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCCh
Confidence 34455568999999999999886433 457899999999999999999877321100000 0000000 1111
Q ss_pred HHHHHHHHc-------cC-CCCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 101 IAKAMLEAL-------TG-STSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 101 ~~~~il~~l-------~~-~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
.+..+.... .. ...+..++.+.++.... -..+++-++|+|+++......++.+++.+....+.+.+|++|.
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 111111110 00 00011122222222211 1235667899999988876778888888888777777665554
Q ss_pred c-hHHHh-hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 172 N-ESIAS-MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 172 ~-~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
. ..+.. .......+++.+++.++...++...+...+...+ .+.+..|++.++|.+.
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSAR 224 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 3 33332 2234568999999999999999988764443222 2336789999999874
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.1e-07 Score=100.22 Aligned_cols=205 Identities=18% Similarity=0.200 Sum_probs=122.0
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh-------------------
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR------------------- 82 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------- 82 (639)
.|..-.++||.+...+.|...+.... -+..+.++|++|+||||+|+.+++...-..
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g 83 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEG 83 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcC
Confidence 44555679999999999999887433 346789999999999999998877321100
Q ss_pred cCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCC
Q 006588 83 QFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL 161 (639)
Q Consensus 83 ~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~ 161 (639)
.+..++.++.....+..++ +.+.+. +.. ...+++-++|+|+++.......+.++..+....
T Consensus 84 ~~~dv~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 84 TFMDVIELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 145 (472)
T ss_pred CCCccEEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC
Confidence 0111222222222111111 111111 110 123456799999998765555677777777765
Q ss_pred CCcEEEEEccc-hHHHh-hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCC-chhHHHHHHh
Q 006588 162 HGSKILITTRN-ESIAS-MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGG 238 (639)
Q Consensus 162 ~~~~ilvTsr~-~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 238 (639)
..+.+|++|.+ ..+.. .......+++.+++.++....+.+.+...+.... .+.+..|++.++| ...++..+..
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55655555443 22322 2344568999999999999999887753332221 2336778887754 4667766655
Q ss_pred hhcC---CCCHHHHHHHH
Q 006588 239 LMSS---KKTEEEWKRIL 253 (639)
Q Consensus 239 ~l~~---~~~~~~~~~~l 253 (639)
.... ..+.+.....+
T Consensus 222 l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 222 VWKFSEGKITLETVHEAL 239 (472)
T ss_pred HHHhcCCCCCHHHHHHHH
Confidence 4321 23445554444
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.85 E-value=1.3e-07 Score=98.03 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=117.1
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH--hc-----------------
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK--RQ----------------- 83 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~----------------- 83 (639)
|..-.+++|.++.++.|.+++.... -.+.+.++|++|+|||++|+.+++...-. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 84 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGS 84 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4455578999999999999997433 45788999999999999998887642100 00
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCC
Q 006588 84 FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLH 162 (639)
Q Consensus 84 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~ 162 (639)
...+++++....... ....++...+... ..+++-++|+|+++.......+.+.+.+.....
T Consensus 85 ~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 85 SLDVIEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred CCCEEEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 111222222111111 1112222222111 224556889999987765556778888877666
Q ss_pred CcEEEEEccchH-HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 163 GSKILITTRNES-IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 163 ~~~ilvTsr~~~-~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
.+.+|++|.+.. +. ........+++.+++.++..+++...+...+.... .+.+..+++.++|.|..+....
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 777777765543 22 22334568899999999999999887653332211 2347888999999986554443
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=3.7e-08 Score=102.08 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=120.1
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.|..-.++||.+..+..|..++.... -...+.++|++|+||||+|+.+++. ...... .....|....+
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~-~~~~pCg~C~s---- 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKR--LNCENP-IGNEPCNECTS---- 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--cCcccc-cCccccCCCcH----
Confidence 34455678999999999999997443 3467899999999999999999773 211100 00011111111
Q ss_pred HHHHHHHccCC--------CCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 102 AKAMLEALTGS--------TSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~--------~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
+..+....... ..+..++.++.+.+.. ...++.-++|+|+++......++.+++.+......+.+|++|.+
T Consensus 81 C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 22222211100 0011222222222221 12356679999999998877788888888776667766666654
Q ss_pred h-HH-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 173 E-SI-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 173 ~-~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
. .+ .........+.+.+++.++..+++...+...+..-+ .+.+..|++.++|.+.
T Consensus 161 ~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 161 FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHH
Confidence 3 22 233344568999999999999999887654333221 2347889999999984
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.1e-07 Score=96.99 Aligned_cols=200 Identities=13% Similarity=0.086 Sum_probs=122.9
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEE-E--EeCCCCc
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILW-V--CVSETFD 97 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~w-v--~~~~~~~ 97 (639)
.|....+++|.++..+.|.+.+.... -+..+.++|+.|+||+++|..+++.. ..... ..... . ..-...+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~L-lc~~~~~~~~~~~~~~~l~~~~ 87 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFL-LATPPPGGDGAVPPPTSLAIDP 87 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHH-hCCCCCCCCccccccccccCCC
Confidence 44455679999999999999997543 46789999999999999998887742 11110 00000 0 0000001
Q ss_pred hHHHHHHHHHHccCC----------C----CCcccHHHHHHHHHHhc-----CCceEEEEEeCCCCCCccCchhhhHhhh
Q 006588 98 EFRIAKAMLEALTGS----------T----SNLDALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYHCLK 158 (639)
Q Consensus 98 ~~~~~~~il~~l~~~----------~----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~l~ 158 (639)
....++.+...-+.. . ...-.+++.. .+.+.+ .+.+-++|+|+++.++....+.+++.+.
T Consensus 88 ~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 88 DHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred CChHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 111222222111100 0 0111234432 233332 2456799999999998888888999998
Q ss_pred cCCCCcEEEEEccchH-HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 159 KGLHGSKILITTRNES-IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 159 ~~~~~~~ilvTsr~~~-~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
....++.+|++|.... +. ........+.+.+++.+++.+++...... ... +....++..++|.|+....+
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~-----~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD-----DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH-----HHHHHHHHHcCCCHHHHHHH
Confidence 8777777777776643 22 23345679999999999999999876421 111 11367899999999855444
No 66
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=6.1e-08 Score=104.79 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=122.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++. ...... . ....+.....+
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~----~-~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKG--LNCETG----I-TATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHh--hhhccC----C-CCCCCCCCHHH
Confidence 3455679999999999999997443 3566899999999999999999774 221100 0 01112222333
Q ss_pred HHHHHHcc-----CCC---CCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALT-----GST---SNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~-----~~~---~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+.|...-+ ... .+..++.++.+.+.. -..++.-++|||+++.......+.+++.+......+++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 33321110 000 011122222222221 124566799999999988778899999999887777777776653
Q ss_pred H-HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 174 S-IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 174 ~-~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
. +. ........+.+..++.++....+...........+ .+....|++.++|.+...
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDA 217 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 3 22 23344679999999999999999886643322211 233678999999988633
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=8.4e-08 Score=102.21 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=120.6
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.|..-.+++|++..++.|.+++.... .++.+.++|+.|+||||+|+.+++.. ... -|... ..++....
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L--~C~----~~~~~-~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAI--NCL----NPKDG-DCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHh--cCC----CCCCC-CCCcccHH
Confidence 34555678999999999999996443 45789999999999999999887732 100 01110 11222222
Q ss_pred HHHHHHHccCC-----C---CCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 102 AKAMLEALTGS-----T---SNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
++.+....... . .+.+++.+....+... ..+++-++|+|+++......++.++..+......+.+|++|..
T Consensus 79 Cr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 79 CESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 22222211100 0 0011122222222211 1223447999999887766678888888877667766666544
Q ss_pred h-HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHHHh
Q 006588 173 E-SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMGG 238 (639)
Q Consensus 173 ~-~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 238 (639)
. .+. ........+++.+++.++....+...+...+.... .+.+..+++.++|.+. |+..+-.
T Consensus 159 ~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 159 FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3 332 23345668999999999999998887643332111 2336789999999664 4444443
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.82 E-value=6e-08 Score=98.37 Aligned_cols=187 Identities=11% Similarity=0.100 Sum_probs=114.0
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC-ceEEEEeCCCCchHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD-KILWVCVSETFDEFR 100 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~ 100 (639)
.|..-.+++|.++.++.|.+++... ..+.+.++|++|+||||+|..+++.. ....|. .++-++.++..+..
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~- 79 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID- 79 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-
Confidence 3444556899999999999888743 34457899999999999999988732 122221 22222222222221
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-Hhh
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASM 178 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~ 178 (639)
..+.+...+..... ....++.-++|||+++.......+.+...+......+++++++.... + ...
T Consensus 80 ~vr~~i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 80 VVRNKIKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 12222221110000 00023467999999998865556667777766666677777775421 1 122
Q ss_pred hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 179 MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 179 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
......+++.+++.++..+.+...+...+.... .+.+..|++.++|....+
T Consensus 147 ~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 147 QSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 233458999999999999999887754333222 233688889998877443
No 69
>PF14516 AAA_35: AAA-like domain
Probab=98.81 E-value=1.4e-06 Score=88.46 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=124.8
Q ss_pred ccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC---
Q 006588 19 QSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET--- 95 (639)
Q Consensus 19 ~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--- 95 (639)
..+-+.+..-+|.|...-+++.+.+... ...+.|.|+-.+|||+|..++.+. ....-..++++++...
T Consensus 3 ~g~~~~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~ 73 (331)
T PF14516_consen 3 GGPLPLDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSA 73 (331)
T ss_pred CCCCCCCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCc
Confidence 3445556666789997777777777532 458999999999999999999884 3333345668887642
Q ss_pred --CchHHHHHHHHHHccCCCCC-----------cccHHHHHHHHHHh-c--CCceEEEEEeCCCCCCc-cC-chhhhHhh
Q 006588 96 --FDEFRIAKAMLEALTGSTSN-----------LDALQSLLISIDES-I--AGKRFLLVLDDVWDGDY-IK-WEPFYHCL 157 (639)
Q Consensus 96 --~~~~~~~~~il~~l~~~~~~-----------~~~~~~~~~~l~~~-l--~~~~~LlvlDd~~~~~~-~~-~~~l~~~l 157 (639)
.+..++++.++..+.....- ..+.......+.+. + .+++++|+||+++..-. .. ...+...+
T Consensus 74 ~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~L 153 (331)
T PF14516_consen 74 IFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLL 153 (331)
T ss_pred ccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHH
Confidence 24555565555544322210 01111222222222 1 26899999999976432 11 12333322
Q ss_pred h---c-CC-----CCcEEEEEccchH-H-Hh----hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHH
Q 006588 158 K---K-GL-----HGSKILITTRNES-I-AS----MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRI 222 (639)
Q Consensus 158 ~---~-~~-----~~~~ilvTsr~~~-~-~~----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i 222 (639)
. . .. ..-++++....+. . .. .......+.+++|+.+|+..|+.++...... +..++|
T Consensus 154 R~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~--------~~~~~l 225 (331)
T PF14516_consen 154 RSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQ--------EQLEQL 225 (331)
T ss_pred HHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCH--------HHHHHH
Confidence 2 1 11 1122222222111 1 11 1123558899999999999999886532111 117999
Q ss_pred HHHcCCchhHHHHHHhhhcCC
Q 006588 223 ARKCKGLPLAAKTMGGLMSSK 243 (639)
Q Consensus 223 ~~~~~g~Plal~~~~~~l~~~ 243 (639)
...++|||..+..++..+..+
T Consensus 226 ~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 226 MDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999764
No 70
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1e-07 Score=102.85 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=120.5
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCchHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDEFR 100 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~ 100 (639)
|..-.++||-+..+..|.+++.... -...+.++|+.|+||||+|+.+++..--.+.. .+... ..++.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccH
Confidence 3455678999999999999998543 45788999999999999999886631100000 01000 1122222
Q ss_pred HHHHHHHHcc-----CCCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 101 IAKAMLEALT-----GSTSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 101 ~~~~il~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
.++.|...-+ ........+++..+.+... ..++.-++|||+++......++.+++.+......+++|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 3333321100 0000011222222222211 123455899999999887788888888888777777776664
Q ss_pred c-hHH-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 172 N-ESI-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 172 ~-~~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
+ ..+ .........++++.++.++..+.+...+...+...+ .+.+..|++.++|.+.-+
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4 222 233455678999999999999999887654333222 233678899999877444
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.80 E-value=3.3e-08 Score=88.19 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=76.8
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHc
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEAL 109 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 109 (639)
+||++++..+...+... ..+.+.|+|++|+|||++++++++. .......++++++.+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 48899999999998742 4578999999999999999999884 32333567777765543322222111100
Q ss_pred cCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC------CCCcEEEEEccch
Q 006588 110 TGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG------LHGSKILITTRNE 173 (639)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~------~~~~~ilvTsr~~ 173 (639)
............++.++|+||++.........+...+... ..++.+|+|+...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111222456789999999865322333444444443 3577888888754
No 72
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=8.9e-08 Score=96.91 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=116.9
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhh----HHhcCCceEEEEe-CCCCchHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE----VKRQFDKILWVCV-SETFDEFRI 101 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~ 101 (639)
.+++|.+...+.|.+++.... -++...++|+.|+|||++|+.+++... ...+++...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 467899999999999997443 567889999999999999998877320 1122233233221 11112111
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHH--Hhhh
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESI--ASMM 179 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~--~~~~ 179 (639)
.+++.+.+... -..+++-++|+|+++.+....++.+++.+.....++.+|++|.+.+. .+..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222110 12345668888999888777889999999998889988888865432 1223
Q ss_pred cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHH
Q 006588 180 RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 234 (639)
Q Consensus 180 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 234 (639)
.....+++.+++.++....+.+... .. . .+.+..++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~--~~-~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN--DI-K-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc--CC-C-----HHHHHHHHHHcCCCHHHHH
Confidence 4467899999999999988876542 11 1 1226778899999886543
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.1e-07 Score=101.42 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=118.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH-------------------Hhc
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV-------------------KRQ 83 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------------~~~ 83 (639)
|..-.++||-+..++.|..++.... -...+.++|++|+||||+|+.+++..-- .+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 4455678999999999999997543 4567899999999999999888773210 011
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCC
Q 006588 84 FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHG 163 (639)
Q Consensus 84 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~ 163 (639)
+..++.++..+...+.++ +++++.+.. .-..++.-++|+|+++.......+.+++.+......
T Consensus 87 ~~d~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred CceEEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 222333332222222221 122222111 011345568999999988777788888888887777
Q ss_pred cEEEEEccch-HH-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 164 SKILITTRNE-SI-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 164 ~~ilvTsr~~-~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
+++|++|.+. .+ .+.......++++.++.++..+.+...+...+...+ .+.+..|++.++|-+.-+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 8777766543 22 222344567899999999998887776644332222 223678899999988433
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.79 E-value=2.7e-07 Score=88.81 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=99.5
Q ss_pred cCCCCcccchhhH-HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 24 IDEEEICGRVGER-NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 24 ~~~~~~vgR~~~~-~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
..-++||+..... ..+..... . .....++|+|++|+|||+|+.++++. ...+...+.|+++.+ ..
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~-~-----~~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~ 81 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAA-G-----QSSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AA 81 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHh-c-----cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hh
Confidence 3445576655443 33333322 1 13456999999999999999999884 333444677776432 11
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-Cc-hhhhHhhhcC-CCCcEEEEEccchH-----
Q 006588 103 KAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-KW-EPFYHCLKKG-LHGSKILITTRNES----- 174 (639)
Q Consensus 103 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-~~-~~l~~~l~~~-~~~~~ilvTsr~~~----- 174 (639)
..+.+ .+.. + .+.-+|||||++..... .+ ..+...+... ..+..+|+|++...
T Consensus 82 ~~~~~-----------------~~~~-l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~ 142 (233)
T PRK08727 82 GRLRD-----------------ALEA-L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLAL 142 (233)
T ss_pred hhHHH-----------------HHHH-H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhh
Confidence 11111 1111 1 12348999999754311 12 2233333332 23556999998532
Q ss_pred ----HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 175 ----IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 175 ----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
+...+.....+++.+++.++..+++.+++........ .+.+..|++.+.|-.-.+
T Consensus 143 ~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 143 VLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred hhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 2222233568999999999999999987653322221 233677777777665544
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.2e-07 Score=97.72 Aligned_cols=190 Identities=11% Similarity=0.100 Sum_probs=114.0
Q ss_pred CCcccchhhHHHHHHHHhccCCcC----CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ----QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~----~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
.+++|.+..++.|.+++.....+. .+-++.+.++|++|+|||++|+.+++. ....... ...++.-..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~------~~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD------EPGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC------CCCCCCCHHH
Confidence 468999999999999998543100 013578999999999999999988763 1111000 0111111222
Q ss_pred HHHHHHccCC------CCCcccHHHH---HHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 103 KAMLEALTGS------TSNLDALQSL---LISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 103 ~~il~~l~~~------~~~~~~~~~~---~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
+.+....+.. ......+++. .+.+.. -..+++-++|+|+++.......+.+++.+.....++.+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 2222111100 0001112222 222211 11345568889999998766777788888887777777777665
Q ss_pred hH-HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 173 ES-IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 173 ~~-~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.. +. +.......+.+..++.++..+.+.+..+ .+ .+.+..++..++|.|..-
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~~------~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---VD------PETARRAARASQGHIGRA 210 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---CC------HHHHHHHHHHcCCCHHHH
Confidence 42 22 3334467999999999999998875321 11 122678899999999644
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.78 E-value=2.1e-07 Score=86.82 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=99.1
Q ss_pred HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh-------------------cCCceEEEEeCCCCch
Q 006588 38 ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR-------------------QFDKILWVCVSETFDE 98 (639)
Q Consensus 38 ~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~ 98 (639)
.|.+.+... +-...+.++|++|+|||++|+.++....-.. .+....++........
T Consensus 3 ~l~~~i~~~-----~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~ 77 (188)
T TIGR00678 3 QLKRALEKG-----RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIK 77 (188)
T ss_pred HHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCC
Confidence 455666532 2457899999999999999988877421110 1111122211111000
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch-HHH
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE-SIA 176 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~ 176 (639)
.+..+++ .+.+... ..+.+-++|+||++.......+.++..+......+.+|++|++. .+.
T Consensus 78 ~~~i~~i-----------------~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 78 VDQVREL-----------------VEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHHHHHH-----------------HHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 1111111 2222111 13456789999998877666778888888876677777777643 222
Q ss_pred -hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 177 -SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 177 -~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
........+++.+++.++..+++.+.. .+ .+.+..+++.++|.|.
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~g----i~------~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQG----IS------EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHcC----CC------HHHHHHHHHHcCCCcc
Confidence 222345689999999999999998862 11 2347899999999885
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1e-07 Score=102.32 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=117.2
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..-.++||.+..++.|..++.... -.+.+.++|++|+||||+|+.+++.. .... .+ . ...+..-..+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l--~c~~-~~---~-~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSL--NCET-GV---T-ATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHh--cCCC-CC---C-CCCCCCCHHHH
Confidence 445578999999999999997543 45678999999999999999887632 1100 00 0 00111111111
Q ss_pred HHHHHc-----cCCCCCcccHHHHHHHHHH----hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch-
Q 006588 104 AMLEAL-----TGSTSNLDALQSLLISIDE----SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE- 173 (639)
Q Consensus 104 ~il~~l-----~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~- 173 (639)
.+...- .........+++..+.+.. -..+++-++|+|+++.......+.+++.+......+.+|++|.+.
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 111100 0000001112222211111 113556799999999887666788888888876677766666543
Q ss_pred HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHHH
Q 006588 174 SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMG 237 (639)
Q Consensus 174 ~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 237 (639)
.+. +.......+++..++.++..+.+.+.+...+.... .+.+..|++.++|.+. |+..+-
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 22334568999999999999988877643332211 2236788999999875 444443
No 78
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.8e-07 Score=95.01 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=124.6
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc----CCceEEEEeCCCCc
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ----FDKILWVCVSETFD 97 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~ 97 (639)
.|.....++|.++....|...+.... .+..+.|+|+.|+||||+|..+++. .... +... .....+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~ 87 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDP 87 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCC
Confidence 44566679999999999999997544 4678999999999999999988774 2111 1111 0111111
Q ss_pred hHHHHHHHHHHcc-------CC---C----CCcccHHHHHHHHHHhc-----CCceEEEEEeCCCCCCccCchhhhHhhh
Q 006588 98 EFRIAKAMLEALT-------GS---T----SNLDALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYHCLK 158 (639)
Q Consensus 98 ~~~~~~~il~~l~-------~~---~----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~l~ 158 (639)
....++.+...-+ .+ . ...-.+++.. .+.+++ .++.-++|+|+++.++....+.+++.+.
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 2224444433211 11 0 0111234432 333332 2456699999999988777888999988
Q ss_pred cCCCCcEEEEEccchH-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 159 KGLHGSKILITTRNES-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 159 ~~~~~~~ilvTsr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
....++.+|++|.... + .+.......+++.+++.++..+++...+.... . ..+.+..+++.++|.|.....+
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~----~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S----DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 8766666555554432 2 22234456999999999999999987542111 0 1223678999999999754433
No 79
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.76 E-value=1.9e-07 Score=90.04 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=103.7
Q ss_pred cCCCCcc-cchh-hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 24 IDEEEIC-GRVG-ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 24 ~~~~~~v-gR~~-~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
..-++|+ |+.. .+..+.++.... ...+.+.|+|++|+|||+||+.+++. ....-..+.++++......
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~~~--- 84 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAGP-----VADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPLLA--- 84 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhcc-----CCCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhHHH---
Confidence 3445555 5433 444455544321 24568999999999999999999884 3222335666665442110
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-CCCc-EEEEEccchHH----
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGS-KILITTRNESI---- 175 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~-~ilvTsr~~~~---- 175 (639)
+ .. ....-+||+||++..+......+...+... ..+. .+++|++....
T Consensus 85 -------~------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 85 -------F------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred -------H------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 0 01 112347889999876543434455555432 1233 36666664321
Q ss_pred ----HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 176 ----ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 176 ----~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
...+.....+++.+++.++...++.+.+........ .+..+.+++...|++..+..+...+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~----~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA----DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112223468999999998877777765432222221 2346788888999998887776654
No 80
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=2.2e-07 Score=100.58 Aligned_cols=199 Identities=12% Similarity=0.141 Sum_probs=122.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC--ceEEEEeCCCCchHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD--KILWVCVSETFDEFR 100 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~ 100 (639)
|..-.++||.+..+..|.+++.... -...+.++|+.|+||||+|+.+++...-..... +..+ ..+..-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccH
Confidence 3455568999999999999997543 467899999999999999998877421110000 0000 1111122
Q ss_pred HHHHHHHHccCCC-----CCcccHHH---HHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 101 IAKAMLEALTGST-----SNLDALQS---LLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 101 ~~~~il~~l~~~~-----~~~~~~~~---~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
-++.|...-+... .....+++ +++.+... ..+++-++|+|+++.......+.+++.+......+++|++|.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 2333332221110 01112222 22222211 123455899999988876677888989888877787776664
Q ss_pred c-hHH-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHH
Q 006588 172 N-ESI-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAK 234 (639)
Q Consensus 172 ~-~~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 234 (639)
. ..+ .........+++..++.++....+.+.+...+.... .+.++.|++.++|.+.-+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGL 231 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3 222 222344568999999999999999887754433222 2346889999999986443
No 81
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.5e-07 Score=98.21 Aligned_cols=202 Identities=15% Similarity=0.168 Sum_probs=119.7
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE-eCCCCchHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC-VSETFDEFRI 101 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~ 101 (639)
|..-.+++|.+..++.|.+++.... -+..+.++|++|+||||+|+.+++...-...+...-|.. ....+..-..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 3445578999999999999997433 456789999999999999998877421111011111110 0112222223
Q ss_pred HHHHHHHccCC-----CCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 102 AKAMLEALTGS-----TSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
++.+....... .......++..+..... ..+++-++|+|+++......++.+.+.+....+.+.+|+++..
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 33333211110 00111133333222211 1245568899999887766778888888887777776665533
Q ss_pred -hHHHh-hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 173 -ESIAS-MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 173 -~~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
..+.. .......+++.+++.++..+.+...+...+.... .+.++.+++.++|.+--+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 33322 2233457899999999999988887643322111 234789999999988533
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=4.7e-07 Score=97.50 Aligned_cols=201 Identities=13% Similarity=0.087 Sum_probs=122.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.++.. ..... ...+ ..++.-..+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~-~~~~----~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARS--LNCAQ-GPTA----TPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcccc-CCCC----CcccccHHH
Confidence 4445678999999999999997543 4567899999999999999998873 21100 0000 111111222
Q ss_pred HHHHHHc-------cCCC---CCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 103 KAMLEAL-------TGST---SNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 103 ~~il~~l-------~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
+.+...- .... .+.+++.++.+.+... ..++.-++|+|+++.......+.+++.+......+.+|++|.
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 2222110 0000 0112222222222211 124556899999998887788889999998777777776665
Q ss_pred c-hHHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHHHhh
Q 006588 172 N-ESIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMGGL 239 (639)
Q Consensus 172 ~-~~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 239 (639)
+ ..+. ........+++..++.++..+.+.+.+...+.... .+.+..|++.++|.+. ++..+-+.
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 3332 23344678999999999999999887654332221 2236778999999874 55554443
No 83
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=3.1e-07 Score=98.47 Aligned_cols=203 Identities=12% Similarity=0.144 Sum_probs=122.5
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.|..-.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-..... ...++.-..
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHH
Confidence 34445578999999999999997432 357899999999999999998887421000000 011222222
Q ss_pred HHHHHHHccCCC-----CCcccHHH---HHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 102 AKAMLEALTGST-----SNLDALQS---LLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~~-----~~~~~~~~---~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
++.+...-.... .....+++ +.+.+.. -..+++-++|+|+++.......+.+++.+........+|++|..
T Consensus 79 C~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred HHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 333322211000 00011222 1111111 12355679999999888766778888888776566666666654
Q ss_pred h-HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch-hHHHHHHhhh
Q 006588 173 E-SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTMGGLM 240 (639)
Q Consensus 173 ~-~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 240 (639)
. .+. ........+++..++.++..+.+...+........ .+.+..|++.++|.+ .|+..+.+.+
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 332 22344568899999999999999886653332111 234788999999966 5776665443
No 84
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.69 E-value=2e-07 Score=90.16 Aligned_cols=212 Identities=16% Similarity=0.133 Sum_probs=132.0
Q ss_pred ccccCCCCcccch---hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhh----HHhcCCceEEEEeC
Q 006588 21 TSLIDEEEICGRV---GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE----VKRQFDKILWVCVS 93 (639)
Q Consensus 21 ~~~~~~~~~vgR~---~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~----~~~~f~~~~wv~~~ 93 (639)
...+..+.+||-. +.+++|.+.+..+. ....+.+.|+|++|.|||++++++..... .......|+.|...
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3445556677655 45667777777665 45668899999999999999999986421 11112358888889
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC-ceEEEEEeCCCCCCccC------chhhhHhhhcCCCCcEE
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG-KRFLLVLDDVWDGDYIK------WEPFYHCLKKGLHGSKI 166 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~~~~~------~~~l~~~l~~~~~~~~i 166 (639)
..++...++..|+.+++.+....+........+.+.++. +.=+||+|++++.-... .-.+++++.+.-.-+.|
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 999999999999999998886666666655555455543 34489999997632222 22233444333344456
Q ss_pred EEEccchHH-----HhhhcccceEECCCCCHHHH-HHHHHHHh--hCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 167 LITTRNESI-----ASMMRSTDVISIKELAEEEC-WALFKQLA--FFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 167 lvTsr~~~~-----~~~~~~~~~~~l~~l~~~ea-~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.+-|++-.. .+..+..+.+.++.+..++- ..|+.... ..-+... .-...+.+..|++.++|+.--+.-+
T Consensus 185 ~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred EeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHHHH
Confidence 666654221 12223466777777755443 33443322 1111111 1223567899999999998554433
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.68 E-value=8.3e-07 Score=85.62 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=102.0
Q ss_pred CCcc-cc-hhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 27 EEIC-GR-VGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 27 ~~~v-gR-~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
++|+ |. ...+..+.++.... +.+.+.|+|++|+|||+|+..+++. ...+...+.|+++..... .
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~------~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~--- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE------HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---F--- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---h---
Confidence 4555 53 33445555554322 3468999999999999999999884 333345677777643110 0
Q ss_pred HHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc-cCch-hhhHhhhcC-CCC-cEEEEEccchH------
Q 006588 105 MLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY-IKWE-PFYHCLKKG-LHG-SKILITTRNES------ 174 (639)
Q Consensus 105 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-~~~~-~l~~~l~~~-~~~-~~ilvTsr~~~------ 174 (639)
..+..+.+. . .-+|++||++.... ..|+ .+...+... ..| .++|+||+...
T Consensus 88 --------------~~~~~~~~~----~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 88 --------------VPEVLEGME----Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred --------------hHHHHHHhh----h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 011111111 1 13789999976432 1222 233333322 123 46899987542
Q ss_pred ---HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 175 ---IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 175 ---~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
+...+.+...+++.+++.++-.+++.+.+....... .++.++.|++.+.|..-.+..+-..+
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL----PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 333344557999999999999999887664322211 13346778888877766655554433
No 86
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.68 E-value=1.6e-07 Score=90.91 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=106.3
Q ss_pred CCcccchhhH---HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGER---NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~---~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
+++||.+..+ ..|+++++ .+....+.+||++|+||||||+.++... +. ....||..+-...-..-++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie------q~~ipSmIlWGppG~GKTtlArlia~ts--k~--~SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE------QNRIPSMILWGPPGTGKTTLARLIASTS--KK--HSYRFVELSATNAKTNDVR 207 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH------cCCCCceEEecCCCCchHHHHHHHHhhc--CC--CceEEEEEeccccchHHHH
Confidence 3456655444 34555555 4467889999999999999999887732 11 2256676665444444444
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEE--ccchH---HHhh
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILIT--TRNES---IASM 178 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvT--sr~~~---~~~~ 178 (639)
.|.++-.. ...+..++.+|++|+|...+..+.+.|+ |.-..|..++|- |-++. ....
T Consensus 208 ~ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 208 DIFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHH
Confidence 44444221 1124678999999999876555544444 444446655553 33332 1222
Q ss_pred hcccceEECCCCCHHHHHHHHHHHhh---CCCC---chhh---hHHHHHHHHHHHHcCCchh
Q 006588 179 MRSTDVISIKELAEEECWALFKQLAF---FGRS---TEEC---EKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 179 ~~~~~~~~l~~l~~~ea~~l~~~~~~---~~~~---~~~~---~~~~~~~~~i~~~~~g~Pl 231 (639)
+..-.++.+++|...+...++.+... +... .... .-.....+.++..|+|-..
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 34566899999999999999887321 1111 1111 1224456677778888763
No 87
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=4.2e-08 Score=108.35 Aligned_cols=93 Identities=29% Similarity=0.448 Sum_probs=73.5
Q ss_pred ceeEEecCCCCCCCcccccccccCCCcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecC
Q 006588 443 SLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNR 521 (639)
Q Consensus 443 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 521 (639)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+.+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677788888877777877888888888888888877 777778888888888888888777788878888888888888
Q ss_pred CCCccccccccCCC
Q 006588 522 DTDSVRYMPVGIAR 535 (639)
Q Consensus 522 ~n~~~~~~p~~~~~ 535 (639)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 88777788876654
No 88
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.7e-08 Score=106.25 Aligned_cols=174 Identities=26% Similarity=0.329 Sum_probs=116.4
Q ss_pred CceEEEEEEecccCcccccccCCC-CccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTK-RIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
+.+..+.+..+.+..++.....++ +|+.|++..|. ...++.. +..+++|+.|++++|. ...+|...+.++.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~------i~~l~~~-~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK------IESLPSP-LRNLPNLKNLDLSFND-LSDLPKLLSNLSN 187 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc------hhhhhhh-hhccccccccccCCch-hhhhhhhhhhhhh
Confidence 457777777777777777666664 78888777776 3344333 5677788888888887 5566665556777
Q ss_pred CcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEe
Q 006588 468 LRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRV 547 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~ 547 (639)
|+.|++++|+++.+|..+..+..|+.|.+++|. ....+..+.++.++..+.+.+|. ...+|..++.++++++|++.+.
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce-eeeccchhccccccceeccccc
Confidence 788888888888777776666678888887775 44455557777777777777775 3334566667777777763333
Q ss_pred cCCCccCCCccCCcccccCCCcCCceeeeCc
Q 006588 548 SGRGCLDGRKACRLESLKNLEHLQICGIRGL 578 (639)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 578 (639)
.... ++. ++.+.+++.|++++|...
T Consensus 266 ~i~~-----i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 266 QISS-----ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccc-----ccc-ccccCccCEEeccCcccc
Confidence 2222 222 677777777777776654
No 89
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.3e-08 Score=91.95 Aligned_cols=106 Identities=24% Similarity=0.360 Sum_probs=33.1
Q ss_pred cCCCCccEEEeeccccCCCCchhhhHHHHHh-hCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhh-h
Q 006588 409 CRTKRIRSLLIECRRFDHSSLNGEILEELFR-ELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEAL-C 486 (639)
Q Consensus 409 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i-~ 486 (639)
.+..+++.|++++|.+. .+ .. +. .+.+|++|++++|.+ ..++ .+..+++|+.|++++|.|+.+++.+ .
T Consensus 16 ~n~~~~~~L~L~~n~I~------~I-e~-L~~~l~~L~~L~Ls~N~I-~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS------TI-EN-LGATLDKLEVLDLSNNQI-TKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccc------cc-cc-hhhhhcCCCEEECCCCCC-cccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 33446677777777642 22 12 22 466777777777773 3443 3556777777777777777776544 3
Q ss_pred cCCCccEEecCCCCCc--cccchhhhhcccCceeecCCCCc
Q 006588 487 ELYNLEKLDICSCSCL--KELPEGIGKLINMKYLLNRDTDS 525 (639)
Q Consensus 487 ~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~n~~ 525 (639)
.+++|+.|++++|.+. ..+ ..+..+++|+.|++.+|++
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp H-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GG
T ss_pred hCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcc
Confidence 5777777777777642 222 2356677777777777764
No 90
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=1e-07 Score=82.62 Aligned_cols=120 Identities=23% Similarity=0.231 Sum_probs=80.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
.++++|.|+.|+||||++++++++.. ....++|+++.+.........+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccC
Confidence 46899999999999999999987432 3356788887764331111000 122233333347
Q ss_pred eEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHHhh------hcccceEECCCCCHHHH
Q 006588 134 RFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIASM------MRSTDVISIKELAEEEC 195 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~------~~~~~~~~l~~l~~~ea 195 (639)
+.+++||+++... +|....+.+.+..+..+|++|+........ .+....+++.+|+..|-
T Consensus 62 ~~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7899999998763 787777777776667889999887544321 13355789999988773
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=98.67 E-value=8.3e-07 Score=85.49 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=93.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
...++|+|++|+|||.|+.++++. ...+-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 367899999999999999999873 333345677887643 1111 011 12222222
Q ss_pred eEEEEEeCCCCCCc-cCc-hhhhHhhhcC-CCCcEEEEEccchH---------HHhhhcccceEECCCCCHHHHHHHHHH
Q 006588 134 RFLLVLDDVWDGDY-IKW-EPFYHCLKKG-LHGSKILITTRNES---------IASMMRSTDVISIKELAEEECWALFKQ 201 (639)
Q Consensus 134 ~~LlvlDd~~~~~~-~~~-~~l~~~l~~~-~~~~~ilvTsr~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 201 (639)
. +||+||++.... ..| ..+...+... ..|..+|+|++... +...+.....+++.+++.++..+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 678999974321 233 2344444432 24567888887532 222233456889999999999999986
Q ss_pred HhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 202 LAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.+........ .+..+.|++.+.|-.-.+..+-..+
T Consensus 178 ka~~~~~~l~----~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLHLT----DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5543222111 3446777777777766665554444
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=4.5e-07 Score=101.54 Aligned_cols=193 Identities=11% Similarity=0.064 Sum_probs=118.5
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++...-..... ...+..-..+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHH
Confidence 3344578999999999999997543 456789999999999999998877421000000 0011111122
Q ss_pred HHHHHH-------ccCCCCCcccHHHHHH---HHH-HhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 103 KAMLEA-------LTGSTSNLDALQSLLI---SID-ESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 103 ~~il~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
+.|... +.........+++..+ .+. .-..++.-++|||+++.+.....+.|++.+......+.+|++|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 222211 0000000111222222 111 11235556899999999887788889999998877777776665
Q ss_pred ch-HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 172 NE-SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 172 ~~-~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
+. .+. ........+++..++.++..+++.+.....+.... .+.+..|++.++|.+.
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR 216 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVR 216 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 43 233 23345678999999999999998887643332211 2235788999999884
No 93
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.5e-08 Score=106.66 Aligned_cols=193 Identities=22% Similarity=0.254 Sum_probs=145.1
Q ss_pred EEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCC-ceeEEecCCCCCCCcccccccccCCCcEE
Q 006588 393 HLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELT-SLRALDFPSLYLPSEIPRNIKKLIHLRYL 471 (639)
Q Consensus 393 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 471 (639)
.+....+.+......+..++.+..|.+.++. ...+++. ...+. +|+.|++++|. ...+|..+..+++|+.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~------i~~i~~~-~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN------ITDIPPL-IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc------cccCccc-cccchhhcccccccccc-hhhhhhhhhcccccccc
Confidence 3445555543334456667889999888887 4455554 44453 89999999999 67777778899999999
Q ss_pred eccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCC
Q 006588 472 NLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRG 551 (639)
Q Consensus 472 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~ 551 (639)
++++|+++++|...+.++.|+.|++++|. ...+|..+..+..|+.|.+++|. ....+..+..+.++..|. ..++
T Consensus 169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~----l~~n 242 (394)
T COG4886 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE----LSNN 242 (394)
T ss_pred ccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc----cCCc
Confidence 99999999999888899999999999998 88888877677779999999995 345566677777777776 2222
Q ss_pred ccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 552 CLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 552 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
. ....+..++.+++++.|++++|.+. .++. +....+|+.|+++.+...
T Consensus 243 ~-~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~--------~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 243 K-LEDLPESIGNLSNLETLDLSNNQIS-SISS--------LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred e-eeeccchhccccccceecccccccc-cccc--------ccccCccCEEeccCcccc
Confidence 1 1223677889999999999999742 2222 566789999999987654
No 94
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=5e-08 Score=107.74 Aligned_cols=111 Identities=22% Similarity=0.368 Sum_probs=94.8
Q ss_pred ccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCc-ccchhhhcCCCcc
Q 006588 414 IRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIE-KLPEALCELYNLE 492 (639)
Q Consensus 414 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~ 492 (639)
+..|.+. ++.+.+.+|+. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.++ .+|..++.+++|+
T Consensus 420 v~~L~L~-----~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLD-----NQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECC-----CCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 4555444 44557788877 789999999999999988999999999999999999999998 8899999999999
Q ss_pred EEecCCCCCccccchhhhhc-ccCceeecCCCCcccccc
Q 006588 493 KLDICSCSCLKELPEGIGKL-INMKYLLNRDTDSVRYMP 530 (639)
Q Consensus 493 ~L~l~~~~~~~~lp~~~~~l-~~L~~L~l~~n~~~~~~p 530 (639)
.|+|++|.+.+.+|..++.+ .++..+++.+|......|
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999988764 477889999987555444
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=9.7e-07 Score=93.65 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=120.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||-+...+.|...+.... -+++..++|+.|+||||+|+.+++.. ....... ...+.....+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L-~c~~~~~------~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARAL-VCEQGPS------STPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHh-cCCCCCC------CCCCcccHHH
Confidence 3445678999999999999997443 45677999999999999999887632 0000000 0001111111
Q ss_pred HHHHHHccC-----CCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTG-----STSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+...... ........++..+.+... ..+++-++|+|+++.......+.+++.+......+++|++|.+.
T Consensus 78 ~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred HHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 111111100 000001122332222211 12455689999999887777788899998877778777777653
Q ss_pred H-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 174 S-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 174 ~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
. + .........+++.+++.++..+.+...+...+.... .+.+..|++.++|.+.-+...
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 2 1 122344568999999999999999877654332221 234788999999998544433
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=6.7e-07 Score=97.44 Aligned_cols=196 Identities=14% Similarity=0.161 Sum_probs=117.4
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.+++|.+..++.|..++.... -.+.+.++|+.|+|||++|+.+++. ....-....+-.|. .+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~--LnC~~~~~~~~pC~-------~C 79 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANA--LNCSHKTDLLEPCQ-------EC 79 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHH--hcccccCCCCCchh-------HH
Confidence 4445568999999999999997543 4678899999999999999988763 11100000000000 00
Q ss_pred HHHHHH----ccCCC---CCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc-h
Q 006588 103 KAMLEA----LTGST---SNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN-E 173 (639)
Q Consensus 103 ~~il~~----l~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~ 173 (639)
...... +.... .+...+.++++.+... ..+++-++|+|+++......++.+++.+......+.+|++|.. .
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 000000 00000 0111223333332211 2355669999999888766778888888887666665655543 3
Q ss_pred HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHH
Q 006588 174 SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTM 236 (639)
Q Consensus 174 ~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 236 (639)
.+. ........+++.+++.++..+.+...+...+.... .+.+..+++.++|-+. |+..+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 333 23445678999999999999998876543332211 2236789999988764 44443
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.2e-06 Score=92.99 Aligned_cols=187 Identities=15% Similarity=0.169 Sum_probs=115.3
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH--H-----------------hc
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV--K-----------------RQ 83 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~--~-----------------~~ 83 (639)
|..-.+++|.+..+..|..++.... -.+.+.++|+.|+||||+|+.++....- . +.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 3445578999999999999997543 4567789999999999999888763110 0 01
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCC
Q 006588 84 FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLH 162 (639)
Q Consensus 84 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~ 162 (639)
+..+++++..+.. +.+.+.++.+.+... ..+++-++|+|+++.......+.++..+....+
T Consensus 87 ~~d~~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~ 148 (486)
T PRK14953 87 FPDLIEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP 148 (486)
T ss_pred CCcEEEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 1111222111111 111122222222211 235667999999987765566778888877666
Q ss_pred CcEEEEEccc-hHHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 163 GSKILITTRN-ESIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 163 ~~~ilvTsr~-~~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.+.+|++|.+ ..+. ........+.+.+++.++....+...+...+.... .+.+..|++.++|.+..+...
T Consensus 149 ~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6666665543 2232 22334568999999999999998887654332221 233678889999987644433
No 98
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=5.5e-07 Score=98.58 Aligned_cols=199 Identities=12% Similarity=0.132 Sum_probs=122.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++.. ...... .-...++....+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l--~c~~~~----~~~~~c~~c~~c 80 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAV--NCTTND----PKGRPCGTCEMC 80 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHh--cCCCCC----CCCCCCccCHHH
Confidence 4445679999999999999987433 35678999999999999999988732 111000 001122333444
Q ss_pred HHHHHHccCC-----CCCcccHHHH---HHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTGS-----TSNLDALQSL---LISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~~-----~~~~~~~~~~---~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+.+....+.. .......++. ++.+... ..+++-++|+|+++.......+.+++.+......+.+|+++.+.
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 5554333211 0011222222 2222211 12456789999998876666778888888776677777666542
Q ss_pred -HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 174 -SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 174 -~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.+. ........+++..++..+....+...+...+.... .+.+..|++.++|.+..+...
T Consensus 161 ~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 222 22334568899999999999988887654332221 234788999999998654443
No 99
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1e-06 Score=91.59 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=110.5
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH------hcCCc-eEEEEeCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK------RQFDK-ILWVCVSET 95 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~ 95 (639)
|..-.+++|.+..++.+.+.+.... -++.+.++|++|+|||++|+.+++...-. ..|.. ++-++....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccC
Confidence 4445578999999999999997533 45789999999999999999887632110 11111 111111111
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch-H
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE-S 174 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~ 174 (639)
... +....+.+.+.. .-..+++-++|+|+++......++.+...+......+.+|+++... .
T Consensus 88 ~~~-~~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 88 NSV-DDIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CCH-HHHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 111 111111211110 0012345589999998765555667777776655556666655432 2
Q ss_pred HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 175 IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 175 ~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
+. ........+++.+++.++....+...+...+.... .+.++.+++.++|.+-.+
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 22 22234558999999999999999887754333221 234788888899876533
No 100
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.63 E-value=1.6e-07 Score=89.27 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=122.6
Q ss_pred CcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCC
Q 006588 17 RVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSET 95 (639)
Q Consensus 17 ~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~ 95 (639)
|...-.|+..++++|.+..++.|...+.. ........|||+|.|||+.|+++++..--.+.| +.++=.|++..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 33444566677899999999999999985 257899999999999999999887732112233 33333333322
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc--CCce-EEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI--AGKR-FLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
.+.. +.++= ..+............ ..++ -++|||+.+.+....|..+++.+..+...+++++.+..
T Consensus 100 rGis-vvr~K----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 100 RGIS-VVREK----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred cccc-chhhh----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 2111 00000 000010000000000 1123 58999999999989999999999998888887666654
Q ss_pred hH--HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 173 ES--IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 173 ~~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
-. +......-..+..+++..++...-+...+...+.+.+. +..+.|++.++|--
T Consensus 169 lsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 169 LSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDL 224 (346)
T ss_pred hhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcH
Confidence 22 22223334578889999999999888888666655433 33678888887754
No 101
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=3.9e-08 Score=88.79 Aligned_cols=122 Identities=26% Similarity=0.281 Sum_probs=51.2
Q ss_pred CceEEEEEEecccCccccccc-CCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccc-cccC
Q 006588 389 EKVRHLMLIIGKESTFPISTC-RTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNI-KKLI 466 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~ 466 (639)
...+.|.+.++.+..+. .+. .+.+|+.|++++|.+. .+. . +..++.|++|++++|.+ ..++..+ ..++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~------~l~-~-l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT------KLE-G-LPGLPRLKTLDLSNNRI-SSISEGLDKNLP 88 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--------T-T-----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCc------ccc-C-ccChhhhhhcccCCCCC-CccccchHHhCC
Confidence 45688999999998875 454 6899999999988853 332 2 66789999999999995 4555444 4689
Q ss_pred CCcEEeccCCCCcccc--hhhhcCCCccEEecCCCCCccccch----hhhhcccCceeecC
Q 006588 467 HLRYLNLSGQKIEKLP--EALCELYNLEKLDICSCSCLKELPE----GIGKLINMKYLLNR 521 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~ 521 (639)
+|+.|++++|+|..+- ..+..+++|+.|++.+|++.. .+. .+..+|+|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 9999999999998554 357789999999999999543 333 25778888888754
No 102
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=9e-07 Score=96.02 Aligned_cols=200 Identities=15% Similarity=0.173 Sum_probs=119.7
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE-eCCCCchHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC-VSETFDEFRI 101 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~ 101 (639)
|..-.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....+...|.. ....++.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHH
Confidence 3445678999999999999987433 457799999999999999998877421111111011111 1112222233
Q ss_pred HHHHHHHccCC-----CCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 102 AKAMLEALTGS-----TSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
++.+...-... ......+++....+... ..+.+-++|+|+++.......+.+++.+......+.+|++|.+
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 33332211110 00111133333322221 2344557899999888766678888898887767766555543
Q ss_pred -hHHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 173 -ESIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 173 -~~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
..+. ........+++..++.++....+.+.+...+.... .+.++.|++.++|..-
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHH
Confidence 3333 23345678999999999999888876643332111 2337889999999665
No 103
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.62 E-value=6.9e-09 Score=97.53 Aligned_cols=135 Identities=27% Similarity=0.298 Sum_probs=93.0
Q ss_pred hCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceee
Q 006588 440 ELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLL 519 (639)
Q Consensus 440 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 519 (639)
..+.|+.+|||+|. +..+-++..-.+.++.|++|.|.|..+.. +..+++|+.|||++|. +..+--+=.++.|++.|.
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 34578888888888 56666777777888888888888887654 7788888888888887 444444445677888888
Q ss_pred cCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCC
Q 006588 520 NRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVS 582 (639)
Q Consensus 520 l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 582 (639)
+++|. ++.+ ++++.+-+|..|+ ..+|++-.-.....++++|.|+.+.+.+|.+...+.
T Consensus 359 La~N~-iE~L-SGL~KLYSLvnLD---l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNK-IETL-SGLRKLYSLVNLD---LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhh-Hhhh-hhhHhhhhheecc---ccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 88884 4443 2345555556665 334443223334568888889988888887654433
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2.8e-06 Score=92.54 Aligned_cols=200 Identities=12% Similarity=0.147 Sum_probs=119.8
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.++||.+...+.|..++.... -.+.+.++|+.|+||||+|+.++...--..... ...++....+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHH
Confidence 3455679999999999999997443 457789999999999999998877421000000 0011111222
Q ss_pred HHHHHHccC-------C-CCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc-
Q 006588 103 KAMLEALTG-------S-TSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN- 172 (639)
Q Consensus 103 ~~il~~l~~-------~-~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~- 172 (639)
..|...-.. . .....++.++.+.+... ..++.-++|+|+++.......+.+++.+......+.+|++|.+
T Consensus 80 ~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred HHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 222111000 0 00111222232222211 1234558999999888766788899999887777777666544
Q ss_pred hHHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch-hHHHHHHh
Q 006588 173 ESIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTMGG 238 (639)
Q Consensus 173 ~~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 238 (639)
..+. ........+++..++.++....+...+...+...+ .+.+..|++.++|.. .++..+-+
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 160 HKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred hhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333 23344668899999999999888776643332221 233678899999866 45555433
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.1e-06 Score=92.67 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=114.2
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-CCceEEEEeCCCCchHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-FDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~ 102 (639)
..-.+++|.+..+..|.+++.... -.+.+.++|++|+||||+|+.+++...-... .+. ..+.....+
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~-------~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQ-------EPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCC-------CCCcccHHH
Confidence 445678999999999999997433 3577899999999999999888774210000 000 000000000
Q ss_pred HHHHHH-------ccC-CCCCcccHHHHHHHHHH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEA-------LTG-STSNLDALQSLLISIDE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+... +.. ...+...+.+..+.+.. ...+++-++|+|+++.......+.+++.+......+.+|++|...
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~ 161 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161 (451)
T ss_pred HHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCCh
Confidence 000000 000 00000111111111111 113556788999998776556677888888776677676666432
Q ss_pred -HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHH
Q 006588 174 -SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTM 236 (639)
Q Consensus 174 -~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 236 (639)
.+. ........+++..++.++....+...+...+.... .+.+..|++.++|.+. |+..+
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 222 22344568999999999999988877643332211 2347889999999774 44433
No 106
>PRK09087 hypothetical protein; Validated
Probab=98.60 E-value=1e-06 Score=84.03 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=89.5
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
.+.++|+|++|+|||+|++.+++. . .+.|++.. .+...+...+. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~------~~~~~~~~~~~---------------------~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPN------EIGSDAANAAA---------------------E- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHH------HcchHHHHhhh---------------------c-
Confidence 467999999999999999988763 1 23344332 11111111111 1
Q ss_pred eEEEEEeCCCCCCccCchhhhHhhhcC-CCCcEEEEEccch---------HHHhhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 134 RFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGSKILITTRNE---------SIASMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
-+|++||++... ..-..+...+... ..|..+|+|++.. ++...+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 178889997542 1223344444332 2366799988742 233444556799999999999999999887
Q ss_pred hCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 204 FFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
........ ++..+.|++.+.|..-++..+...+
T Consensus 167 ~~~~~~l~----~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQLYVD----PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcCCCCC----HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 54322211 3346778888877777666544333
No 107
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.4e-06 Score=95.07 Aligned_cols=193 Identities=17% Similarity=0.162 Sum_probs=115.4
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..-.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.++... .......- ...++.-..++
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l--~c~~~~~~----~~~Cg~C~sC~ 82 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTI--NCQNLTAD----GEACNECESCV 82 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHh--CCCCCCCC----CCCCCcchHHH
Confidence 344578999999999999997443 46779999999999999998877632 10000000 00000111111
Q ss_pred HHHHHcc-----CCCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc-ch
Q 006588 104 AMLEALT-----GSTSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR-NE 173 (639)
Q Consensus 104 ~il~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr-~~ 173 (639)
.+-..-. ....+....++....+... ..+++=++|+|+++.......+.+++.+......+.+|++|. ..
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 1111000 0000011122222222111 123455889999998877778889999988777777666553 33
Q ss_pred HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 174 SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 174 ~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
.+. ........+++.+++.++....+.+.+...+.... .+.+..|++.++|...
T Consensus 163 kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr 217 (614)
T PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMR 217 (614)
T ss_pred hchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 333 23345678999999999999999887654433222 2236889999999775
No 108
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.9e-06 Score=93.41 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=117.9
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.|..-.+++|.+..++.|.+++.... -.+.+.++|+.|+|||++|+.+++. ....-. .-..+++....
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAka--l~c~~~-----~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKA--VNCLNP-----PDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCC-----CCCCCCCccHH
Confidence 34556689999999999999998543 4677889999999999999988763 110000 00111222223
Q ss_pred HHHHHHHccCC-----C---CCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 102 AKAMLEALTGS-----T---SNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 102 ~~~il~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
+..+....... . .+.+.+.++.+.+... ..++.-++|+|+++......++.+++.+......+.+|++|..
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 33332221110 0 0011122222222211 2345668899999887766778888888776666666665543
Q ss_pred h-HHH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 173 E-SIA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 173 ~-~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
. .+. ........+++..++.++....+...+...+...+ .+.+..|++.++|.+..
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRD 216 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 3 222 22344568899999999999998887653332222 23367888888887753
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=2.2e-07 Score=96.10 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=104.4
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
.|.....+++|++++.+++.+.+.....+. -..++.+.|+|++|+|||++|+++++. ....| +.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~ 188 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV 188 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc
Confidence 344455678999999999999875432210 123567999999999999999999873 33332 2221
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------CchhhhHhh---hc
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-----------KWEPFYHCL---KK 159 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~l---~~ 159 (639)
. .++ ...... .........+...-...+.+|+||+++..... ....+...+ ..
T Consensus 189 ~----~~l----~~~~~g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 G----SEL----VRKYIG-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred h----HHH----HHHhhh-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 1 111 111110 01111112222222356789999998653110 011222232 21
Q ss_pred C--CCCcEEEEEccchHHHh-hh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 160 G--LHGSKILITTRNESIAS-MM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 160 ~--~~~~~ilvTsr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
. ..+..||.||....... .+ .....+.+...+.++..++|..+......... .. ...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-~~----~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-VD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-CC----HHHHHHHcCCCC
Confidence 1 24567888887543211 11 22457899999999999999887754332211 11 467777777764
No 110
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.57 E-value=2e-06 Score=87.61 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=97.7
Q ss_pred CCCcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 15 PRRVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 15 ~~~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
..|...-.|..-.+++|.++..+.+.+++.... .+.++.++|++|+|||++|+.+++. .. ..+..+++..
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~---~~~~~i~~~~ 78 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VG---AEVLFVNGSD 78 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---ccceEeccCc
Confidence 334444455666789999999999999997432 4578888999999999999999773 22 2344555554
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-CchhhhHhhhcCCCCcEEEEEccch
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-KWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.. .+..+..+..+.... .....+-++|+|+++..... ....+...+.....++.+|+||...
T Consensus 79 -~~-~~~i~~~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred -cc-HHHHHHHHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 22 111112111111000 01234568899999766222 2334555566666778888888753
Q ss_pred H--HHhhhcccceEECCCCCHHHHHHHHHH
Q 006588 174 S--IASMMRSTDVISIKELAEEECWALFKQ 201 (639)
Q Consensus 174 ~--~~~~~~~~~~~~l~~l~~~ea~~l~~~ 201 (639)
. ..........+.+...+.++..+++..
T Consensus 142 ~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 142 NGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 2 112223345778888888888776654
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.57 E-value=6.5e-07 Score=99.02 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=101.2
Q ss_pred ccCCCCcccchhhHH---HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 23 LIDEEEICGRVGERN---ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~---~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
|..-.+|+|++..+. .|.+++.. +....+.|+|++|+||||+|+.+++. ....| +.+++.. ...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f---~~lna~~-~~i- 90 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF---SSLNAVL-AGV- 90 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc---eeehhhh-hhh-
Confidence 444567999999884 57777763 24567899999999999999999873 33333 1122110 000
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhc--CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEc--cchH-
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESI--AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITT--RNES- 174 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTs--r~~~- 174 (639)
.+..+........+ .+++.+||||+++.......+.++..+.. +..+++++ .+..
T Consensus 91 -----------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~ 150 (725)
T PRK13341 91 -----------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYF 150 (725)
T ss_pred -----------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHh
Confidence 01111111111111 24577999999987654444445544433 45455533 3321
Q ss_pred -H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCC---chhhhHHHHHHHHHHHHcCCchhH
Q 006588 175 -I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRS---TEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 175 -~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
+ .........+.+++++.++...++.+....... ...-.-..+..+.|++.+.|....
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 1 112233568999999999999999887641000 000011133467888888887643
No 112
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=2.1e-06 Score=86.35 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=117.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..+..++||+.|+..+.+++..... .+..+.+.|.|-+|.|||.+...+..+......=..++++++.+-....+++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 4456799999999999999987776 78889999999999999999998887533322223568999998888888888
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhcCC--ceEEEEEeCCCCCCccCchhhhHhhhcC-CCCcEEEEEcc-c-hHHH--
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESIAG--KRFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGSKILITTR-N-ESIA-- 176 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr-~-~~~~-- 176 (639)
.|...+...........+....+...... ..+|+|+|+.|.........+...+.|. -+++++|+..- + -++.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88888822221122223344444444332 4789999998764333333333333332 23444443321 1 1111
Q ss_pred --hhh-----cccceEECCCCCHHHHHHHHHHHhh
Q 006588 177 --SMM-----RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 177 --~~~-----~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
..+ -....+...+++.++..+++.+...
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 111 1245788899999999999988764
No 113
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=8.4e-09 Score=96.99 Aligned_cols=131 Identities=25% Similarity=0.280 Sum_probs=104.5
Q ss_pred ccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKK 464 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 464 (639)
...++.++.+.+++|.+..+.++.+-.+.++.|+++.|.+ ..+ .. +..+.+|+.||||+|. ...+-.|-.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i------~~v-~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI------RTV-QN-LAELPQLQLLDLSGNL-LAECVGWHLK 350 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccce------eee-hh-hhhcccceEeecccch-hHhhhhhHhh
Confidence 4456788899999999999999999999999998877763 222 23 6778999999999999 4555555556
Q ss_pred cCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccc--hhhhhcccCceeecCCCCcc
Q 006588 465 LIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELP--EGIGKLINMKYLLNRDTDSV 526 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~n~~~ 526 (639)
+-+++.|.|++|.|..+. .++++.+|..||+++|++ ..+- .+++++|+|+++.+.+|++.
T Consensus 351 LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence 778999999999998773 688999999999999984 3332 45899999999999999754
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.4e-06 Score=93.35 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=121.5
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..-.+++|.+.....|..++.... -.+.+.++|+.|+||||+|+.+++... ....... ....+...+.++
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~----~~~~Cg~C~~C~ 82 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP----TPEPCGKCELCR 82 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC----CCCCCcccHHHH
Confidence 444578999999999999998543 346789999999999999999987421 1111100 011222334444
Q ss_pred HHHHHccCC-----CCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH
Q 006588 104 AMLEALTGS-----TSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES 174 (639)
Q Consensus 104 ~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~ 174 (639)
.+....+.. ......+++..+.+... ..+++-++|+|+++.......+.+++.+......+.+|++|.+..
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 444332211 11112222322222211 124456889999998876677888888888766676666555432
Q ss_pred -HH-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 175 -IA-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 175 -~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
+. ........+++..++.++....+.+.+...+.... .+.+..|++.++|.+..+...
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22 23344568889999999998888776643322211 233788999999988644433
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.54 E-value=2.5e-06 Score=81.12 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCc-ccch-hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCchHHH
Q 006588 26 EEEI-CGRV-GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDEFRI 101 (639)
Q Consensus 26 ~~~~-vgR~-~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~ 101 (639)
-++| +|.. +......+.+.... +.....+.|||++|+|||.|..++++. ..... ..++|+++ .++
T Consensus 7 Fdnfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f 75 (219)
T PF00308_consen 7 FDNFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEF 75 (219)
T ss_dssp CCCS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHH
T ss_pred cccCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHH
Confidence 3455 4642 33334444444332 223445899999999999999999994 33332 35666644 456
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC-c-hhhhHhhhcC-CCCcEEEEEccch-----
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK-W-EPFYHCLKKG-LHGSKILITTRNE----- 173 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~-~-~~l~~~l~~~-~~~~~ilvTsr~~----- 173 (639)
...+...+.. ....+..+ .+. .-=+|++||++...... | +.+...+... ..|.++|+|+...
T Consensus 76 ~~~~~~~~~~-----~~~~~~~~----~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 76 IREFADALRD-----GEIEEFKD----RLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHHHHT-----TSHHHHHH----HHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred HHHHHHHHHc-----ccchhhhh----hhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 7777766654 22233322 233 23488999997643222 2 2333333332 2466899999643
Q ss_pred ----HHHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhh
Q 006588 174 ----SIASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGL 239 (639)
Q Consensus 174 ----~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 239 (639)
++...+...-.+++.+.+.++..+++.+.+....... ..+.++.|++.+.+..-.+..+-..
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l----~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIEL----PEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-----HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 2333445566899999999999999998875444332 2334667777777766666555433
No 116
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=2.6e-06 Score=91.96 Aligned_cols=195 Identities=12% Similarity=0.070 Sum_probs=118.1
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-.+++|-+..+++|..++.... -.+.+.++|+.|+||||+|+.+++...-...... ..++.-...
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHH
Confidence 3344578999999999999997533 5678999999999999999998874211100000 011111111
Q ss_pred HHHHHHccC-----CCCCcccHHHHHHHH---HH-hcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTG-----STSNLDALQSLLISI---DE-SIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+.+...-.. .......+++..+.. .. -..+++-++|+|+++......++.+++.+......+.+|++|.+.
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 222111000 000011222222221 21 123556689999998887667788888888777777777766542
Q ss_pred -HHHh-hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 174 -SIAS-MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 174 -~~~~-~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.+.. .......+++..++.++..+.+.+.+...+.... .+.+..|++.++|.+..+
T Consensus 160 ~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 2322 2344567899999999999999887643332221 233678999999988533
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.53 E-value=5.9e-07 Score=93.31 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=101.4
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
.....+++|++++.+++.+.+..+..+. -..++-|.|+|++|+|||++|+++++. .... |+.+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~- 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG- 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh-
Confidence 3444568899999999999875322110 134677999999999999999999873 3222 222211
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------cC-chhhhHhhhc---C-
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY----------IK-WEPFYHCLKK---G- 160 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------~~-~~~l~~~l~~---~- 160 (639)
. .+.....+ .........+...-...+.+|+||+++..-. .+ ...+...+.. .
T Consensus 199 ---~----~l~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 ---S----ELVQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred ---H----HHhHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1 11111111 1111111222222245678999999975310 01 1123333321 1
Q ss_pred -CCCcEEEEEccchHHHh-hh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 -LHGSKILITTRNESIAS-MM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 -~~~~~ilvTsr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..+..||.||...+... .+ .....++++..+.++..++|..+........ ... ...+++.+.|+-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCC----HHHHHHHcCCCC
Confidence 23556777776543211 11 1245799999999999999988764332211 111 356666666654
No 118
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=3.5e-08 Score=111.38 Aligned_cols=154 Identities=30% Similarity=0.390 Sum_probs=111.6
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCC--CCCcccccccccCCCcEEeccCCC-Ccccchh
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLY--LPSEIPRNIKKLIHLRYLNLSGQK-IEKLPEA 484 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~p~~~~~l~~L~~L~l~~~~-l~~lp~~ 484 (639)
..+....+...+.++... .++.+ ..++.|++|-+.+|. +....+..|..++.|++|||++|. +..+|..
T Consensus 519 ~~~~~~~rr~s~~~~~~~------~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE------HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred ccchhheeEEEEeccchh------hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 344567777777777632 22222 335579999999986 333334457779999999999775 7799999
Q ss_pred hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccc
Q 006588 485 LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESL 564 (639)
Q Consensus 485 i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l 564 (639)
|+.|-+|++|+++++. ...+|.+++++.+|.+|++..+.....+|.....+++|++|.+......+ + ...+.++
T Consensus 591 I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~--~---~~~l~el 664 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN--D---KLLLKEL 664 (889)
T ss_pred HhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc--c---hhhHHhh
Confidence 9999999999999998 77899999999999999999987666676666679999999865444111 1 2334444
Q ss_pred cCCCcCCceee
Q 006588 565 KNLEHLQICGI 575 (639)
Q Consensus 565 ~~L~~L~l~~n 575 (639)
.+|+.|.....
T Consensus 665 ~~Le~L~~ls~ 675 (889)
T KOG4658|consen 665 ENLEHLENLSI 675 (889)
T ss_pred hcccchhhhee
Confidence 55555555443
No 119
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.51 E-value=4.9e-06 Score=81.65 Aligned_cols=171 Identities=15% Similarity=0.133 Sum_probs=109.8
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
..++|-+|+.++..|...+.... ..-+..|.|+|-+|.|||.+.+.+.+.. -...+|+++.+.++...++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHH
Confidence 34678999999999999997544 2244567999999999999999998742 235789999999999999999
Q ss_pred HHHHcc-CCCCCcc------cHHHHHHHHHH--hc--CCceEEEEEeCCCCCCccCc---hhhhHhhhcCCCCcEEEEEc
Q 006588 105 MLEALT-GSTSNLD------ALQSLLISIDE--SI--AGKRFLLVLDDVWDGDYIKW---EPFYHCLKKGLHGSKILITT 170 (639)
Q Consensus 105 il~~l~-~~~~~~~------~~~~~~~~l~~--~l--~~~~~LlvlDd~~~~~~~~~---~~l~~~l~~~~~~~~ilvTs 170 (639)
|+.+.. ...++.. +.-..+..+.+ .. +++.++|||||++...+.+- ..+.+.-.-......+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 999995 2222211 11111222222 11 24689999999976543331 22222211122233455554
Q ss_pred cch---HHHhhhc--ccceEECCCCCHHHHHHHHHHHh
Q 006588 171 RNE---SIASMMR--STDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 171 r~~---~~~~~~~--~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
-.. ......+ ..-.+..+..+.+|..+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 432 2222122 24477889999999999997743
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.48 E-value=1.5e-06 Score=98.74 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=99.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC------Cc-eEEEEeCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF------DK-ILWVCVSET 95 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f------~~-~~wv~~~~~ 95 (639)
+..-+.++||+.++.++.+.|.. +....++|+|++|+|||++|+.+++. +.... .. ++.++++.-
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r------~~~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR------RRQNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc------CCcCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh
Confidence 33445689999999999999873 34457789999999999999999884 32211 11 222332210
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc--CCceEEEEEeCCCCCCc-------cCch-hhhHhhhcCCCCcE
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI--AGKRFLLVLDDVWDGDY-------IKWE-PFYHCLKKGLHGSK 165 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~-------~~~~-~l~~~l~~~~~~~~ 165 (639)
........+.++....+...+ .+.+++|++|+++.... .+.. .+...+.. ...+
T Consensus 255 --------------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~ 318 (852)
T TIGR03345 255 --------------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELR 318 (852)
T ss_pred --------------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeE
Confidence 000001112222222222222 24689999999966421 1111 13333222 2345
Q ss_pred EEEEccchHHH-------hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 166 ILITTRNESIA-------SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 166 ilvTsr~~~~~-------~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
+|-+|...+.. ......+.+.+++++.+++.+++......-...-.-.-..+....+++.+.++.
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 66666553321 122346799999999999999975433110100000011233566666665554
No 121
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=2.2e-07 Score=92.42 Aligned_cols=292 Identities=20% Similarity=0.169 Sum_probs=177.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..|.+.++|++||||||++-.+.. ....| +++.++++..-.+...+.-.+...++.... +-+..+..+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 458899999999999999987766 56667 566666666665666666666666765543 22333444555567
Q ss_pred CceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHHhhhcccceEECCCCCHH-HHHHHHHHHhhCCCCc-
Q 006588 132 GKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIASMMRSTDVISIKELAEE-ECWALFKQLAFFGRST- 209 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~~~~~~l~~l~~~-ea~~l~~~~~~~~~~~- 209 (639)
+++.++|+||-.... ..-...+-.+....+...++.|+|+.... .......++.++.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 889999999985532 12233444555555666788899865322 22335566666554 7888876655322221
Q ss_pred hhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHcC-------cccchhhccccchhhHHhhhhCCchhh
Q 006588 210 EECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEEEWKRILNS-------DLWKVEEIEKGFLTPLWLSYNDLPSRV 282 (639)
Q Consensus 210 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~-------~~~~~~~~~~~l~~~l~~s~~~L~~~~ 282 (639)
.-.......+.+|.+..+|.|++|+.++...+.- .+......+.. .......-...+...+.+||.-|...+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1111223457899999999999999999988643 22222222221 111111123457788999999999999
Q ss_pred HHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcCcccHHHHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHH
Q 006588 283 KRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEEDEELETIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLA 362 (639)
Q Consensus 283 ~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~ 362 (639)
+-.+..++.|...|+... ..|.+-|-... .........+..+++.+++...... ....|+.-+-++.|+
T Consensus 242 ~~~~~rLa~~~g~f~~~l----~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~---~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 242 RALFGRLAVFVGGFDLGL----ALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLL---GRARYRLLETGRRYA 310 (414)
T ss_pred HHHhcchhhhhhhhcccH----HHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhh---hHHHHHHHHHHHHHH
Confidence 999999999987766542 23333322210 0112233446677888887543221 111345555566666
Q ss_pred HHhc
Q 006588 363 QFVS 366 (639)
Q Consensus 363 ~~~~ 366 (639)
..+.
T Consensus 311 laeL 314 (414)
T COG3903 311 LAEL 314 (414)
T ss_pred HHHH
Confidence 5443
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=4.3e-06 Score=88.28 Aligned_cols=170 Identities=18% Similarity=0.143 Sum_probs=104.9
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
.-++|+|++|+|||+|+.++++.......-..+++++. .++...+...+.... .....+.+.+.. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ-N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-C
Confidence 45899999999999999999884322222234555543 457777776664311 112233333333 3
Q ss_pred EEEEEeCCCCCCcc--CchhhhHhhhcC-CCCcEEEEEccchH---------HHhhhcccceEECCCCCHHHHHHHHHHH
Q 006588 135 FLLVLDDVWDGDYI--KWEPFYHCLKKG-LHGSKILITTRNES---------IASMMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 135 ~LlvlDd~~~~~~~--~~~~l~~~l~~~-~~~~~ilvTsr~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
-+||+||++..... ..+.+...+... ..+..||+||.... +...+.+.-.+.+.+++.++..+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 47889999764321 123344444332 23446888876431 2223344558899999999999999988
Q ss_pred hhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 203 AFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
+....... .-..+.+..|++.+.|.|..+.-+...+
T Consensus 288 ~~~~gl~~--~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIKQ--EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCCC--CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 75432100 1123457889999999998887776544
No 123
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.4e-05 Score=80.24 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=118.6
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH-------------HhcCCceEEEEeC
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV-------------KRQFDKILWVCVS 93 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~ 93 (639)
.+++|.+...+.|.+.+.... -++...++|+.|+||+++|..+++..-- ...++-+.|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999997543 4689999999999999999888774210 1222334444321
Q ss_pred CCCchHHHHHHHHHHcc--CCCCCcccHHHHHHHHHHhc-----CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEE
Q 006588 94 ETFDEFRIAKAMLEALT--GSTSNLDALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKI 166 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~i 166 (639)
........-..-+...+ ......-.+++.. .+.+.+ .+++-++|+|+++.+.....+.+++.+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000000011111 0001111123322 222222 3456799999999888777888999998877 5556
Q ss_pred EEEccch-HH-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 167 LITTRNE-SI-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 167 lvTsr~~-~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
|++|.+. .+ .+.......+++.+++.++..+.+.+......... ....++..++|-|.....+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~-------~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI-------NFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh-------HHHHHHHHcCCCHHHHHHH
Confidence 5555443 22 33345577999999999999999988653211110 1367888999999655443
No 124
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.38 E-value=8.5e-06 Score=76.46 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=84.7
Q ss_pred CCCcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 15 PRRVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 15 ~~~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
..+...+.++.-..++|-+++.++|.+....... ..+...|.+||..|+|||++++++.+. ....--.+
T Consensus 15 l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~--y~~~GLRl------- 83 (249)
T PF05673_consen 15 LEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNE--YADQGLRL------- 83 (249)
T ss_pred EEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcCceE-------
Confidence 3444455566677899999999999988666555 557789999999999999999998873 32221112
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCC-CCCccCchhhhHhhhc----CCCCcEEEEE
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVW-DGDYIKWEPFYHCLKK----GLHGSKILIT 169 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~-~~~~~~~~~l~~~l~~----~~~~~~ilvT 169 (639)
+.....+......+.+.++. ...+++|++||+. ++....+..+...+.. ...+..|..|
T Consensus 84 --------------Iev~k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 84 --------------IEVSKEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred --------------EEECHHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 12222223444555555542 4579999999984 2333445555544432 2345566667
Q ss_pred ccchH
Q 006588 170 TRNES 174 (639)
Q Consensus 170 sr~~~ 174 (639)
|..+.
T Consensus 148 SNRRH 152 (249)
T PF05673_consen 148 SNRRH 152 (249)
T ss_pred cchhh
Confidence 66554
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.37 E-value=2.1e-06 Score=96.83 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=88.4
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh---cC-Cc-eEEEEeCCCCchHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR---QF-DK-ILWVCVSETFDEFRI 101 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f-~~-~~wv~~~~~~~~~~~ 101 (639)
+.++||++++.++.+.|... ...-+.++|++|+|||++|+.+++...... .+ .. ++.+++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~-------- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG-------- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH--------
Confidence 46999999999999999733 445688999999999999999988421111 11 12 2222211
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCCCc--------cCc-hhhhHhhhcCCCCcEEEEEcc
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDGDY--------IKW-EPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~--------~~~-~~l~~~l~~~~~~~~ilvTsr 171 (639)
.+.. ... ...+.++....+.+.+ +.++++|++|+++.... .+. +.+...+.. ....+|-+|.
T Consensus 248 --~l~a---~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt 319 (731)
T TIGR02639 248 --SLLA---GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTT 319 (731)
T ss_pred --HHhh---hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecC
Confidence 1111 000 0122333333333332 34689999999974311 111 223333322 1234555554
Q ss_pred chHHH-------hhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 172 NESIA-------SMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 172 ~~~~~-------~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
..+.. ......+.++++..+.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 43221 112345689999999999999998654
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.36 E-value=1.9e-06 Score=98.25 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH---hcC-CceEE-EEeCCCCchHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK---RQF-DKILW-VCVSETFDEFRI 101 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f-~~~~w-v~~~~~~~~~~~ 101 (639)
..++||++++.++.+.|... ....+.|+|++|+|||++|..+++..... ... ...+| ++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~-------- 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG-------- 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH--------
Confidence 45899999999999999733 44567899999999999999998843211 011 22333 2221
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCCCc-------cCchhhhHhhhcCCCCcEEEEEccch
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDGDY-------IKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~-------~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.+ +.+.. ...+.++....+.+.+ ..++++|++|+++..-. .+...++......+ ..++|.+|...
T Consensus 245 --~l---~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ 317 (821)
T CHL00095 245 --LL---LAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLD 317 (821)
T ss_pred --HH---hccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHH
Confidence 11 11111 1223333333333322 35689999999953211 11222322212222 23455555544
Q ss_pred HHHh-------hhcccceEECCCCCHHHHHHHHHHH
Q 006588 174 SIAS-------MMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 174 ~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
+... .....+.+.+...+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 4322 1234567899999999998887653
No 127
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4e-07 Score=67.27 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCC
Q 006588 467 HLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTD 524 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 524 (639)
+|++|++++|+++.+|+ .+..+++|++|++++|.+...-|..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555666665555553 44555666666666555332223345566666666666554
No 128
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.34 E-value=5.6e-06 Score=78.13 Aligned_cols=180 Identities=20% Similarity=0.197 Sum_probs=107.2
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
+..|..-.+|||.++..++|.=.+..... .....-.|.++||+|.||||||.-+++ +...++ -+.......-.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~----k~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL----KITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe----EecccccccCh
Confidence 34466667899999999998887765553 245567999999999999999988877 333222 11111111111
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-------------------
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG------------------- 160 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~------------------- 160 (639)
.-+..++..+ .+.=+|++|+++......-+.+...+.++
T Consensus 92 gDlaaiLt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 92 GDLAAILTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred hhHHHHHhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 1111222221 12235666776554333222233332221
Q ss_pred CCCcEEEEEccchHHHhhhcc--cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 161 LHGSKILITTRNESIASMMRS--TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~~~~~~~--~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
.+.+-|=.|||-..+...+.. .-..+++-++.+|..+++.+.+..-+..... +.+.+|++...|-|.-
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~----~~a~eIA~rSRGTPRI 219 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDE----EAALEIARRSRGTPRI 219 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCCh----HHHHHHHHhccCCcHH
Confidence 234445667876443333221 2356788899999999999987544443332 3378999999999963
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.34 E-value=1.3e-05 Score=87.99 Aligned_cols=48 Identities=31% Similarity=0.309 Sum_probs=39.1
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..-++++|++..+.++.+.+... ....++|+|++|+||||+|+.+.+.
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 34456899999999998887532 3467999999999999999988764
No 130
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1e-05 Score=81.61 Aligned_cols=169 Identities=12% Similarity=0.089 Sum_probs=99.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC------C--CCcccHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS------T--SNLDALQSLLI 124 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~--~~~~~~~~~~~ 124 (639)
-++.+.++|+.|+|||++|+.+++..--..... ...++.-..++.+...-+.. . .....+++..+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 567899999999999999988877421000000 01111112222222111100 0 00112233322
Q ss_pred HHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-HhhhcccceEECCCCCHHHHHHH
Q 006588 125 SIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASMMRSTDVISIKELAEEECWAL 198 (639)
Q Consensus 125 ~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l 198 (639)
..... ..+++=++|+|+++.+.....+.+++.+.....++.+|++|.+.. + .+..+....+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 22111 123344557799999988888999999998878888888887653 2 23345567899999999999999
Q ss_pred HHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 199 FKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
+...... .. .+.+..++..++|-|+....+
T Consensus 174 L~~~~~~-~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQALPE-SD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhccc-CC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 8775311 11 112567788999999744333
No 131
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=1.3e-07 Score=91.32 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=19.4
Q ss_pred hhCCceeEEecCCCCCCCccc----ccccccCCCcEEeccCCCCc
Q 006588 439 RELTSLRALDFPSLYLPSEIP----RNIKKLIHLRYLNLSGQKIE 479 (639)
Q Consensus 439 ~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~~~l~ 479 (639)
.++++|++|+||+|-+....+ .-+..+..|+.|.|.+|.+.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 334455555555555433322 22233445555555555544
No 132
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.29 E-value=3.3e-05 Score=81.28 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=96.0
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
...++|+|++|+|||+|++++++. ...+. ..++|+++. ++...+...+... ..+.... .++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~~~----~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSSE------KFTNDFVNALRNN-----KMEEFKE----KYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEHH------HHHHHHHHHHHcC-----CHHHHHH----HHH
Confidence 356899999999999999999984 33333 346666543 4444555554321 2222222 222
Q ss_pred CceEEEEEeCCCCCCccC--chhhhHhhhcC-CCCcEEEEEccch-H--------HHhhhcccceEECCCCCHHHHHHHH
Q 006588 132 GKRFLLVLDDVWDGDYIK--WEPFYHCLKKG-LHGSKILITTRNE-S--------IASMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~~~--~~~l~~~l~~~-~~~~~ilvTsr~~-~--------~~~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
+ .-+|||||++...... ...+...+... ..+..+|+|+... . +...+.....+.+.+.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 2388999997643221 12233333322 2345578877642 1 1112223347899999999999999
Q ss_pred HHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 200 KQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
...+........ .+.+..|++.+.|..-.+.-+-
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHH
Confidence 988754433222 3346778888888776554443
No 133
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=6.5e-07 Score=66.17 Aligned_cols=59 Identities=29% Similarity=0.445 Sum_probs=48.5
Q ss_pred CceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCC
Q 006588 442 TSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCS 500 (639)
Q Consensus 442 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 500 (639)
++|++|++++|.+....+..|.++++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478899999998554444678889999999999999997765 67899999999999886
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.28 E-value=2.4e-05 Score=82.62 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=96.2
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
.-++|||++|+|||+|+.++++. ....+ ..++|+++ .++...+...+... ..++ +.+....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 45999999999999999999984 33333 35677754 35666666665421 1222 2222333
Q ss_pred ceEEEEEeCCCCCCccC-c-hhhhHhhhcC-CCCcEEEEEcc-chHH--------HhhhcccceEECCCCCHHHHHHHHH
Q 006588 133 KRFLLVLDDVWDGDYIK-W-EPFYHCLKKG-LHGSKILITTR-NESI--------ASMMRSTDVISIKELAEEECWALFK 200 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~-~-~~l~~~l~~~-~~~~~ilvTsr-~~~~--------~~~~~~~~~~~l~~l~~~ea~~l~~ 200 (639)
..-+|++||++...... . ..+...+... ..+..+|+||. .+.. ...+.....+.+.+.+.+...+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 45589999997532111 1 2233333221 22446888874 3221 1122334588999999999999998
Q ss_pred HHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 201 QLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
+.+........ .+.+..|++.+.|..-.+.-+-
T Consensus 274 ~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 274 KMLEIEHGELP----EEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHhcCCCCC----HHHHHHHHhccccCHHHHHHHH
Confidence 88753322221 3346778888887765554443
No 135
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.9e-05 Score=78.80 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=106.6
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH----------------hcCCceEEEEeCCCCc
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK----------------RQFDKILWVCVSETFD 97 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----------------~~f~~~~wv~~~~~~~ 97 (639)
...++|.+.+.... -+..+.++|+.|+||+++|..+++..--. +.++-+.|+.......
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 34566666665433 56789999999999999998887642100 1111122221000000
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+......-.+++..+..... ..++.=++|+|+++.+....-+.+++.+.....++.+|++|...
T Consensus 86 ------------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 86 ------------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred ------------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 00000001133322222211 12455699999999988778888999999988888877777653
Q ss_pred H-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 174 S-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 174 ~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
. + .+..+....+.+...+.+++.+.+.... .+. ..+..++..++|.|+....+
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~~------~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VSE------RAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CCh------HHHHHHHHHcCCCHHHHHHH
Confidence 3 2 3444556789999999999999887632 111 11567899999999855433
No 136
>PRK06620 hypothetical protein; Validated
Probab=98.28 E-value=1.5e-05 Score=75.32 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=79.9
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
+.+.|||++|+|||+|++.+++.. . ..++..... . ++ ..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~-----~~~~~~~~~--~---------------------~~-------~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--N-----AYIIKDIFF--N---------------------EE-------ILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--C-----CEEcchhhh--c---------------------hh-------HHh-cC
Confidence 679999999999999999876632 1 122220000 0 00 011 22
Q ss_pred EEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-------HHhhhcccceEECCCCCHHHHHHHHHHHhhCCC
Q 006588 135 FLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-------IASMMRSTDVISIKELAEEECWALFKQLAFFGR 207 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 207 (639)
-+|++||++..+...+..+...+.. .|..+|+|++... +...+...-.+++++++.++..+++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788999975432222233333333 4567899987532 233334455899999999998888887764221
Q ss_pred CchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 208 STEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 208 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
... .++.++.|++.+.|---.+.-+
T Consensus 165 l~l----~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 VTI----SRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCC----CHHHHHHHHHHccCCHHHHHHH
Confidence 111 1233666777776665544443
No 137
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.26 E-value=2.9e-05 Score=82.79 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=95.9
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
...++|+|++|+|||+|++++++. ...++ ..++|+++. ++...+...+.. ...+.. .+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~-----~~~~~~----~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRN-----NTMEEF----KEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHc-----CcHHHH----HHHHh
Confidence 356999999999999999999984 44443 346666554 334444444432 112222 22233
Q ss_pred CceEEEEEeCCCCCCccC--chhhhHhhhcC-CCCcEEEEEccchH---------HHhhhcccceEECCCCCHHHHHHHH
Q 006588 132 GKRFLLVLDDVWDGDYIK--WEPFYHCLKKG-LHGSKILITTRNES---------IASMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~~~--~~~l~~~l~~~-~~~~~ilvTsr~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
+.-+|||||++...... ...+...+... ..+..+++||.... +...+.....+++.+.+.++..+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 24489999997543221 12333333221 12445778776431 1222333457999999999999999
Q ss_pred HHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 200 KQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.+.+....... ..+.++.|++.+.|..-.+.-+
T Consensus 290 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 290 KKKAEEEGIDL----PDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHcCCCC----CHHHHHHHHcCcCCCHHHHHHH
Confidence 99875432221 1234788888888887655444
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.26 E-value=1.7e-05 Score=78.06 Aligned_cols=162 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred CcccchhhHHHHHHHHhccC---------CcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 28 EICGRVGERNALVSMLLCES---------SEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~---------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
.++|.+..-+++.+...... -...+....+.++|++|+||||+|+.+++.....+......++.+...
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 47787766666654422210 000234567899999999999999998774211111111122332211
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc--------cCchhhhHhhhcCCCCcEEEEEc
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY--------IKWEPFYHCLKKGLHGSKILITT 170 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------~~~~~l~~~l~~~~~~~~ilvTs 170 (639)
++ ...... .......+.+... ...+|++|+++.... ...+.+...+........+++++
T Consensus 84 -~l----~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DL----VGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hh----hhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11 111111 1111122222222 234899999976321 12233444444443444555665
Q ss_pred cchHHHh-------hhcc-cceEECCCCCHHHHHHHHHHHhhC
Q 006588 171 RNESIAS-------MMRS-TDVISIKELAEEECWALFKQLAFF 205 (639)
Q Consensus 171 r~~~~~~-------~~~~-~~~~~l~~l~~~ea~~l~~~~~~~ 205 (639)
...+... .... ...+.++.++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4432211 1122 346899999999999999887753
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.24 E-value=5.9e-06 Score=94.60 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=86.8
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-------CceEEEEeCCCCchH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-------DKILWVCVSETFDEF 99 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-------~~~~wv~~~~~~~~~ 99 (639)
+.+|||+.++.++.+.|.. +....++|+|++|+|||++|..+++. +...+ ..++.+++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r------~~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~~----- 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR------RTKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMGA----- 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHHH-----
Confidence 4599999999999999973 34567789999999999999988874 22211 1233333211
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhc-C-CceEEEEEeCCCCCCc-----c--CchhhhHhhhcCCCCcEEEEEc
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESI-A-GKRFLLVLDDVWDGDY-----I--KWEPFYHCLKKGLHGSKILITT 170 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDd~~~~~~-----~--~~~~l~~~l~~~~~~~~ilvTs 170 (639)
++ .... ...+.+.....+.+.+ + +++++|++|+++.... . +...++...... ....+|.+|
T Consensus 240 -----l~---a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaT 309 (852)
T TIGR03346 240 -----LI---AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGAT 309 (852)
T ss_pred -----Hh---hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeC
Confidence 11 0000 0112222222222222 2 4689999999975321 1 111122111111 123455555
Q ss_pred cchHHHh-------hhcccceEECCCCCHHHHHHHHHHHh
Q 006588 171 RNESIAS-------MMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 171 r~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
...+... .......+.+...+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5443321 12345678999999999999887653
No 140
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.23 E-value=2.4e-06 Score=74.56 Aligned_cols=96 Identities=20% Similarity=0.101 Sum_probs=55.0
Q ss_pred EEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC-ceE
Q 006588 57 ISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG-KRF 135 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 135 (639)
|.|+|++|+|||++|+.++++. . ..++.++.....+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~---~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--G---FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--T---SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--c---cccccccccccccc---------------cccccccccccccccccccccce
Confidence 6899999999999999998842 2 22445554432100 1112222222223322223 489
Q ss_pred EEEEeCCCCCCccC-----------chhhhHhhhcCCC---CcEEEEEccc
Q 006588 136 LLVLDDVWDGDYIK-----------WEPFYHCLKKGLH---GSKILITTRN 172 (639)
Q Consensus 136 LlvlDd~~~~~~~~-----------~~~l~~~l~~~~~---~~~ilvTsr~ 172 (639)
+|++||++...... ...+...+..... +..+|.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999997654333 3445555554433 4567777765
No 141
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.22 E-value=1.3e-05 Score=72.29 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=85.0
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH------------------hcCCceEEEEe
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK------------------RQFDKILWVCV 92 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------------------~~f~~~~wv~~ 92 (639)
|-++..+.|.+.+.... -+..+.++|+.|+||+++|..+++..--. ..+..+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 56778888888887543 46789999999999999998887742111 22334445433
Q ss_pred CCC---CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEE
Q 006588 93 SET---FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILIT 169 (639)
Q Consensus 93 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvT 169 (639)
... ...+++ +.+...+.... ..++.=++|+|+++.+.....+.+++.+.....++.+|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 322 222222 23333332221 1245669999999999888889999999999999998888
Q ss_pred ccchH--HHhhhcccceEECCCC
Q 006588 170 TRNES--IASMMRSTDVISIKEL 190 (639)
Q Consensus 170 sr~~~--~~~~~~~~~~~~l~~l 190 (639)
|.+.. ..+.......+.+.++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE---
T ss_pred ECChHHChHHHHhhceEEecCCC
Confidence 88754 3333444556666554
No 142
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=1.7e-05 Score=80.53 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=99.2
Q ss_pred Cccc-chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 28 EICG-RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 28 ~~vg-R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
.++| -+..++.|.+.+.... -++...++|+.|+|||++|+.+++..--....... .++.-..++.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 7778888888886433 56788999999999999998886631000000000 011111222221
Q ss_pred HHccCC------CCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H
Q 006588 107 EALTGS------TSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I 175 (639)
Q Consensus 107 ~~l~~~------~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~ 175 (639)
..-+.. ......+++..+.+... ..+.+=++|+|+++.......+.+++.+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 111000 00111233333322221 234556899999998877778889999998888888777776543 2
Q ss_pred -HhhhcccceEECCCCCHHHHHHHHHHH
Q 006588 176 -ASMMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 176 -~~~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
.+.......+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 233455778999999999998888653
No 143
>CHL00181 cbbX CbbX; Provisional
Probab=98.21 E-value=6.3e-05 Score=74.58 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=75.0
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
...+.++|++|+|||++|+.+++.....+.-...-|+.++ ..+ +...+.+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~----l~~~~~g~~-----~~~~~~~l~~a-~-- 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDD----LVGQYIGHT-----APKTKEVLKKA-M-- 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHH----HHHHHhccc-----hHHHHHHHHHc-c--
Confidence 3458999999999999999997742111111111133333 112 222221111 11112223222 2
Q ss_pred eEEEEEeCCCCCC---------ccCchhhhHhhhcCCCCcEEEEEccchHHHhh-------h-cccceEECCCCCHHHHH
Q 006588 134 RFLLVLDDVWDGD---------YIKWEPFYHCLKKGLHGSKILITTRNESIASM-------M-RSTDVISIKELAEEECW 196 (639)
Q Consensus 134 ~~LlvlDd~~~~~---------~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~-------~-~~~~~~~l~~l~~~ea~ 196 (639)
.-+|+||+++... ......+...+........||+++....+... . .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 2499999997531 11123344555555556677777764433221 1 12458999999999999
Q ss_pred HHHHHHhhC
Q 006588 197 ALFKQLAFF 205 (639)
Q Consensus 197 ~l~~~~~~~ 205 (639)
+++...+..
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887753
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.20 E-value=1.2e-05 Score=83.22 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=101.3
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
|...-.++.|-+...+++.+.+..+-.+. -+.++-+.|+|++|+|||++|+++++. .... ++.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~-----fi~i~~ 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTAT-----FIRVVG 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCC-----EEEEeh
Confidence 34444558999999999998775322100 135678999999999999999999873 2222 222211
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc------c----C----chhhhHhhhcC
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY------I----K----WEPFYHCLKKG 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~----~----~~~l~~~l~~~ 160 (639)
.+ +...... .......+.+.......+.+|+||+++..-. . . +..++..+...
T Consensus 213 ----s~----l~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ----SE----FVQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HH----HHHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 11 1111111 0111122223333356789999999864210 0 0 11222222221
Q ss_pred --CCCcEEEEEccchHHHhh--h---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 --LHGSKILITTRNESIASM--M---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 --~~~~~ilvTsr~~~~~~~--~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..+..||+||...+.... . .....+++...+.++..++|..+....... ...+ ...+++.+.|+.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccC----HHHHHHHcCCCC
Confidence 235678888876543221 1 224578999999999999998766432221 1112 456666666654
No 145
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.19 E-value=7.5e-05 Score=69.86 Aligned_cols=183 Identities=17% Similarity=0.229 Sum_probs=111.6
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE-eCCCCchHHHHHHHHHHccCCCCCcccHHHHHHH----
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC-VSETFDEFRIAKAMLEALTGSTSNLDALQSLLIS---- 125 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~---- 125 (639)
.++.+++.++|.-|+|||.+++++... .. . +.++=+- .....+...+...+...+.... ..........
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s--~~-~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLAS--LN-E-DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHh--cC-C-CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHH
Confidence 456789999999999999999955442 11 1 1122122 2345566678888888877622 2333322222
Q ss_pred HHHhc-CCce-EEEEEeCCCCCCccCchhhhHhhhcCCCC---cEEEEEccch--------HHHhhhcccce-EECCCCC
Q 006588 126 IDESI-AGKR-FLLVLDDVWDGDYIKWEPFYHCLKKGLHG---SKILITTRNE--------SIASMMRSTDV-ISIKELA 191 (639)
Q Consensus 126 l~~~l-~~~~-~LlvlDd~~~~~~~~~~~l~~~l~~~~~~---~~ilvTsr~~--------~~~~~~~~~~~-~~l~~l~ 191 (639)
+.... ++++ ..+++|+.++......+.++.+...-..+ -+|+.....+ ...+.-..... |++.+++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 22222 3555 99999999876655555555444322222 2345444322 11121122334 8999999
Q ss_pred HHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 192 EEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 192 ~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.++...|+..+......+..-. ..+....|.....|.|.+|+.++-..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999988876654332211 23457889999999999999887543
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.18 E-value=2.5e-05 Score=82.61 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=95.3
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-----CCceEEEE
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-----FDKILWVC 91 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~ 91 (639)
..-.++.|.+++++++.+.+..+..+ .-+.++-+.|+|++|+|||++|+++++. .... .....|++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEe
Confidence 33455788999999999986532110 0234567999999999999999999884 3222 22345555
Q ss_pred eCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCc-------cC-----chhhhHhhh
Q 006588 92 VSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDY-------IK-----WEPFYHCLK 158 (639)
Q Consensus 92 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~-------~~-----~~~l~~~l~ 158 (639)
+... .++...... ............... ..+++++|+||+++..-. .+ ...++..+.
T Consensus 257 v~~~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 257 IKGP--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ccch--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 4431 111111100 011122222222222 235789999999974310 01 123333333
Q ss_pred cCC--CCcEEEEEccchHHHh-hh----cccceEECCCCCHHHHHHHHHHHhh
Q 006588 159 KGL--HGSKILITTRNESIAS-MM----RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 159 ~~~--~~~~ilvTsr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
... .+..||.||...+... .+ .....|++...+.++..++|..+..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 221 3455666665543222 11 2244689999999999999998764
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=4.4e-05 Score=80.39 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=90.2
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
..-++|+|++|+|||+|+.++++. .......+++++. .++...+...+... .. ..++...+ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356899999999999999999984 3333345666653 34455555555321 11 22333333 3
Q ss_pred eEEEEEeCCCCCCccC--chhhhHhhhcC-CCCcEEEEEccch-H--------HHhhhcccceEECCCCCHHHHHHHHHH
Q 006588 134 RFLLVLDDVWDGDYIK--WEPFYHCLKKG-LHGSKILITTRNE-S--------IASMMRSTDVISIKELAEEECWALFKQ 201 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~--~~~l~~~l~~~-~~~~~ilvTsr~~-~--------~~~~~~~~~~~~l~~l~~~ea~~l~~~ 201 (639)
.-+|++||++...... .+.+...+... ..+..||+||... . +...+.....+.+.+++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3488889996643221 23333333321 2345688887542 1 122233346889999999999999988
Q ss_pred HhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 202 LAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.+........ .+.+..|++.+.+.-
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCH
Confidence 7754332211 223455666666554
No 148
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=1.7e-07 Score=90.49 Aligned_cols=198 Identities=20% Similarity=0.141 Sum_probs=136.0
Q ss_pred ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcc-------------cccccccCCCcEEe
Q 006588 406 ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEI-------------PRNIKKLIHLRYLN 472 (639)
Q Consensus 406 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------------p~~~~~l~~L~~L~ 472 (639)
..+-.+++|+.++|+.|-+....+.+ ...++..+..|+.|.|.+|.+...- ....+.-+.|+++.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~--l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRG--LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHH--HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 34556789999988888876554322 3455778999999999999853221 12234456899999
Q ss_pred ccCCCCcccc-----hhhhcCCCccEEecCCCCCcc----ccchhhhhcccCceeecCCCCcccc----ccccCCCCcCC
Q 006588 473 LSGQKIEKLP-----EALCELYNLEKLDICSCSCLK----ELPEGIGKLINMKYLLNRDTDSVRY----MPVGIARLKSL 539 (639)
Q Consensus 473 l~~~~l~~lp-----~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L 539 (639)
...|.+...+ ..+...+.|+.+.++.|.+-. -+...+..+++|+.||++.|.+... +...+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 9999887544 356778899999998887532 2334578899999999999976533 33445667788
Q ss_pred ccccceEecCCCccCCCccCCc-ccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 540 RTLEEVRVSGRGCLDGRKACRL-ESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
+.|++.++...+.-...+...+ ...|+|+.|.+.+|.+... ....+..+...++.|+.|+|+.|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD---AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH---HHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888766654432111122233 3468999999988876422 3334555666789999999999985
No 149
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.5e-05 Score=77.72 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=105.5
Q ss_pred CCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
...=|=++.+++|++..+-+-.+. =++++=|.+||+||.|||-||+++++ +....| +.+..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc-----
Confidence 346788999999999877555422 25678899999999999999999999 455444 43332
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCC--------CccC------chhhhHhhhcCC--C
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDG--------DYIK------WEPFYHCLKKGL--H 162 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~--------~~~~------~~~l~~~l~~~~--~ 162 (639)
.++.++.-+.. .. ++..+-... ...+++|++|.++.. ...+ +-+++.-+-.+. .
T Consensus 219 ---SElVqKYiGEG--aR----lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 219 ---SELVQKYIGEG--AR----LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ---HHHHHHHhccc--hH----HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 23444433222 12 222222222 356899999998531 0111 222333333333 3
Q ss_pred CcEEEEEccchHHHhhh-----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 163 GSKILITTRNESIASMM-----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 163 ~~~ilvTsr~~~~~~~~-----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..|||..|...++.... ...+.|+++.-+.+--.++|.-+..+-.. ...-+ .+.+++.|.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCc
Confidence 66899999876644321 23568888855666666677666543222 12222 466777777765
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=0.0001 Score=79.10 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=95.4
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
.-++|||.+|+|||.|+.++++.......-..++|+++. ++...+...+... ..+. +.+.+.. .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~~-----~~~~----f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRDG-----KGDS----FRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc-----cHHH----HHHHhhc-C
Confidence 348999999999999999999943221122356676543 4444554444321 1122 2223332 3
Q ss_pred EEEEEeCCCCCCccC-c-hhhhHhhhcC-CCCcEEEEEccch---------HHHhhhcccceEECCCCCHHHHHHHHHHH
Q 006588 135 FLLVLDDVWDGDYIK-W-EPFYHCLKKG-LHGSKILITTRNE---------SIASMMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~-~-~~l~~~l~~~-~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
=+|||||++...... + ..+...+... ..+..|||||+.. .+...+...-.+.+...+.+.-.+++.+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 478899997643222 1 2333444332 2345688888752 12333445668899999999999999988
Q ss_pred hhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 203 AFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
+........ .+.++.|++.+.+..-.|.-+.
T Consensus 459 a~~r~l~l~----~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 459 AVQEQLNAP----PEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred HHhcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 754433222 2346667777666655444443
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.15 E-value=8.2e-06 Score=90.89 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=88.0
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh---cC-CceEEEEeCCCCchHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR---QF-DKILWVCVSETFDEFRIA 102 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~ 102 (639)
..++||++++.++.+.|... ....+.|+|++|+|||++|+.+++...... .+ +..+|. + +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~---- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DI---- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cH----
Confidence 35899999999999999853 335568999999999999999887421111 01 222221 1 01
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCC------C--ccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDG------D--YIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~------~--~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+ +.+.. ...+.+.....+.+.+ +.++.+|++|+++.. . +.+...++..+... ...++|-+|...
T Consensus 251 ~~l---laG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 251 GSL---LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred HHH---hcccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 11110 1122333333332222 346789999999642 1 11222222222222 233455555544
Q ss_pred HHHh-------hhcccceEECCCCCHHHHHHHHHHHh
Q 006588 174 SIAS-------MMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 174 ~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
+... .....+.+.++..+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4221 12346689999999999999997643
No 152
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=8.3e-05 Score=74.45 Aligned_cols=176 Identities=8% Similarity=0.046 Sum_probs=107.9
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC--
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS-- 112 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-- 112 (639)
..+.|.+.+.... -+....++|+.|+||+++|+.+++..-=..... ...++.-..++.+...-+..
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFH 77 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEE
Confidence 3456777776433 467889999999999999998877321000000 01112222222222211100
Q ss_pred -----CCCcccHHHHHH---HHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-HH-hhhcc
Q 006588 113 -----TSNLDALQSLLI---SIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-IA-SMMRS 181 (639)
Q Consensus 113 -----~~~~~~~~~~~~---~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~-~~~~~ 181 (639)
....-.+++..+ .+... ..++.=++|+|+++.+.....+.+++.+.....++.+|++|.+.. +. +..+.
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 001112333332 22211 124556888999999988888999999999888888888877643 33 33455
Q ss_pred cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 182 TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 182 ~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
...+.+.+++.+++.+.+..... .. . ..+...+..++|-|+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~--~~-~------~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS--AE-I------SEILTALRINYGRPL 198 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc--cC-h------HHHHHHHHHcCCCHH
Confidence 67899999999999998887542 11 1 115667888999995
No 153
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.14 E-value=1.3e-05 Score=83.59 Aligned_cols=182 Identities=14% Similarity=0.079 Sum_probs=100.6
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
.-.++.|.+++++++.+.+.-...+. -...+.+.|+|++|+|||++|+++++ +....| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc--
Confidence 33457899999999999885322110 12456789999999999999999988 333333 222110
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc--------cC---chhhhHhh---hcC--C
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY--------IK---WEPFYHCL---KKG--L 161 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--------~~---~~~l~~~l---~~~--~ 161 (639)
++ ...... .........+.......+++|+||+++..-. .+ ...+...+ ... .
T Consensus 252 --eL----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --EL----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --hh----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11 111111 0111122222223345789999999853210 00 01122222 211 2
Q ss_pred CCcEEEEEccchHHHhh-h----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 162 HGSKILITTRNESIASM-M----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 162 ~~~~ilvTsr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
.+..||+||...+.... + .....+++...+.++..++|..+...-... .... ...++..+.|+--
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvd----l~~la~~t~g~sg 390 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVD----LEEFIMAKDELSG 390 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcC----HHHHHHhcCCCCH
Confidence 35678888876543222 1 224588999999999999998876433221 1112 3556666655543
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.13 E-value=1.8e-05 Score=90.33 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh-----cCCceEEEEeCCCCchHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR-----QFDKILWVCVSETFDEFR 100 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~ 100 (639)
-+.++||+.++.++.+.|.. +....++++|++|+|||++|+.+++...... +-..++++++....
T Consensus 177 l~~vigr~~ei~~~i~iL~r------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~---- 246 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV---- 246 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhc------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh----
Confidence 35699999999999999973 3456788999999999999998888421110 01123333333210
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHH-HHHhc-CCceEEEEEeCCCCCCcc-------Cchhh-hHhhhcCCCCcEEEEEc
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLIS-IDESI-AGKRFLLVLDDVWDGDYI-------KWEPF-YHCLKKGLHGSKILITT 170 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l-~~~~~LlvlDd~~~~~~~-------~~~~l-~~~l~~~~~~~~ilvTs 170 (639)
.... .....++.... +.+.. .+.+++|++|+++..... +...+ ...+. . ...++|-+|
T Consensus 247 ---------ag~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~-g~l~~IgaT 314 (857)
T PRK10865 247 ---------AGAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R-GELHCVGAT 314 (857)
T ss_pred ---------hccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-c-CCCeEEEcC
Confidence 0000 01122222222 22211 246899999999654211 11122 22221 1 233555555
Q ss_pred cchHHHh-------hhcccceEECCCCCHHHHHHHHHHHh
Q 006588 171 RNESIAS-------MMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 171 r~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
...+... .....+.+.+..-+.++...++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5544311 12335577888889999999886543
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.13 E-value=9e-05 Score=73.53 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=85.7
Q ss_pred CcccchhhHHHHHHHHhcc---------CCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 28 EICGRVGERNALVSMLLCE---------SSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~---------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
+++|-++..+++.+..... .-....+..-+.++|++|+|||++|+.+++.....+....--|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 5788776666655532210 000011233689999999999999988877322111111112333331
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC---------ccCchhhhHhhhcCCCCcEEEEE
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD---------YIKWEPFYHCLKKGLHGSKILIT 169 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---------~~~~~~l~~~l~~~~~~~~ilvT 169 (639)
.+ +...+.+.. .......+.+. .+-+|+||+++... ......+...+.....+.+||++
T Consensus 99 ~~----l~~~~~g~~-----~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a 166 (284)
T TIGR02880 99 DD----LVGQYIGHT-----APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILA 166 (284)
T ss_pred HH----HhHhhcccc-----hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12 222222211 11122222222 23689999997431 11124455666555556677777
Q ss_pred ccchHHHhhh--------cccceEECCCCCHHHHHHHHHHHhh
Q 006588 170 TRNESIASMM--------RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 170 sr~~~~~~~~--------~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
+......... .....+.++.++.+|..+++.....
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 6543322211 1135799999999999999988764
No 156
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.12 E-value=4.5e-06 Score=80.43 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=61.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC--CchHHHHHHHHHHccCCCCCccc------HHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET--FDEFRIAKAMLEALTGSTSNLDA------LQSLLI 124 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~------~~~~~~ 124 (639)
....++|.|++|+|||||++.++++.... +|+.++|+.+... .+..++++.+...+.....+... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999999864333 7888999986655 78889999984333222211111 111122
Q ss_pred HHHHh-cCCceEEEEEeCCCC
Q 006588 125 SIDES-IAGKRFLLVLDDVWD 144 (639)
Q Consensus 125 ~l~~~-l~~~~~LlvlDd~~~ 144 (639)
....+ -.++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22221 247899999999954
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=2.7e-05 Score=84.65 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 16 RRVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 16 ~~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.|...-.|..-.+++|.++.++++..++...... ....++++|+|++|+||||+++.++..
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444556666777999999999999999765421 234468999999999999999988874
No 158
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.06 E-value=0.00013 Score=77.29 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=118.1
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhh---HHhcCCc--eEEEEeCCCCchH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDE---VKRQFDK--ILWVCVSETFDEF 99 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~---~~~~f~~--~~wv~~~~~~~~~ 99 (639)
-|..+-+|+.|..+|...+...-.. .....++.|+|.+|+|||+.+..+..... .++.-.. -+.|+...-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHH
Confidence 4556789999999999998876641 23445999999999999999999988543 2233333 3355666677899
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcC-----CceEEEEEeCCCCCCccCchhhhHhhhcC-CCCcEEEEEcc-c
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIA-----GKRFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGSKILITTR-N 172 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr-~ 172 (639)
+++..|..++.+.. ..+....+.+..+.. .+++++++|+++..-....+-+...+.|. .++++++|.+- +
T Consensus 473 ~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999997654 344455555554443 45789999998765333334455555554 45676555432 1
Q ss_pred -hH-----HHhhh---cccceEECCCCCHHHHHHHHHHHhh
Q 006588 173 -ES-----IASMM---RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 173 -~~-----~~~~~---~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
.+ +.... -....+...++++.+..+++..+..
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc
Confidence 11 11111 1245788899999999999988774
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.06 E-value=9.4e-06 Score=83.47 Aligned_cols=111 Identities=10% Similarity=0.111 Sum_probs=72.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
..+.++.++.++.+...|.. .+.+.++|++|+|||++|+++++.......+..+.||.+....+..++...+
T Consensus 174 l~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 34588899999999999973 3468999999999999999998854334456788899998887777665422
Q ss_pred HHHccCCCCCcccH-HHHHHHHHHhc--CCceEEEEEeCCCCCCcc
Q 006588 106 LEALTGSTSNLDAL-QSLLISIDESI--AGKRFLLVLDDVWDGDYI 148 (639)
Q Consensus 106 l~~l~~~~~~~~~~-~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~ 148 (639)
.. ...+-... ....+.+.... ..++++||+|+++..+..
T Consensus 246 rP----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 246 RP----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred CC----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 11 00011100 11112222222 246899999999776533
No 160
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00017 Score=72.04 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=108.3
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC--
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS-- 112 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-- 112 (639)
..++|.+.+.... -+..+.++|+.|+||+++|..+++.. ...+.. ...++.-...+.+...-+..
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~l-lC~~~~-------~~~Cg~C~sC~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRAL-LCQNYQ-------SEACGFCHSCELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHH-cCCCCC-------CCCCCCCHHHHHHHcCCCCCEE
Confidence 4556666665433 57899999999999999998887632 010000 00111112222222211100
Q ss_pred -----C-CCcccHHHHHHHHHHhc-----CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH--HHhhh
Q 006588 113 -----T-SNLDALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES--IASMM 179 (639)
Q Consensus 113 -----~-~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~--~~~~~ 179 (639)
. ...-.+++..+ +.+.+ .++.=++|+|+++.+.....+.+++.+.....++.+|++|.+.+ ..+..
T Consensus 78 ~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0 01112333322 22222 23455899999999988888999999999888888777776543 33445
Q ss_pred cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 180 RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 180 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
+....+.+...+.+++.+.+..... .. +..++..++|.|+....+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~-----~~-------~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGI-----TV-------PAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCC-----ch-------HHHHHHHcCCCHHHHHHH
Confidence 5677899999999999998876421 11 346788999999865444
No 161
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=9.9e-05 Score=74.68 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=107.4
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccC---
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTG--- 111 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--- 111 (639)
..++|.+.+.... -+....++|+.|+||+++|.++++.. ...+-.. ...++.-..++.+...-+.
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~L-lC~~~~~------~~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWL-MCQQPQG------HKSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHH-cCCCCCC------CCCCCCCHHHHHHHcCCCCCEE
Confidence 4566777776433 57899999999999999998887642 0000000 0011111222222211110
Q ss_pred ----CCC-CcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-HH-hhhc
Q 006588 112 ----STS-NLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-IA-SMMR 180 (639)
Q Consensus 112 ----~~~-~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~-~~~~ 180 (639)
... ..-.+++..+..... ..+++=++|+|+++.+....-+.+++.+.....++.+|++|.+.+ +. +..+
T Consensus 78 ~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred EEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000 112233333322211 124566999999999988888999999999888888877777643 33 4445
Q ss_pred ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 181 STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 181 ~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
....+.+.+++.+++.+.+.+..+ .+. +.+..++..++|.|..
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~---~~~------~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT---MSQ------DALLAALRLSAGAPGA 200 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC---CCH------HHHHHHHHHcCCCHHH
Confidence 566889999999999998865421 111 1156789999999953
No 162
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.04 E-value=5.1e-05 Score=81.95 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=99.9
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
.+...-.+++|-++..+++.+.+..... ...+.++-+.++|++|+|||++|+.++.. .. +-++.++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~-----~~~~~i~~ 121 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AG-----VPFFSISG 121 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cC-----CCeeeccH
Confidence 4455555689988877777765542110 00234566999999999999999999773 22 12232221
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------cCc----hhhhHhhhcC
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY----------IKW----EPFYHCLKKG 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------~~~----~~l~~~l~~~ 160 (639)
.++ ...... .........+.......+++|+||+++.... ... ..++..+...
T Consensus 122 ----~~~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 122 ----SDF----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred ----HHH----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 111 111111 1112223333333456789999999965211 011 1222222211
Q ss_pred --CCCcEEEEEccchHH-Hhhh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 --LHGSKILITTRNESI-ASMM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 --~~~~~ilvTsr~~~~-~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..+..||.||..... ...+ .....+.+...+.++..+++..+....... ... ....+++.+.|+-
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~----~l~~la~~t~G~s 260 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDV----DLKAVARRTPGFS 260 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cch----hHHHHHHhCCCCC
Confidence 234456666665432 1111 224578999999999999998876433221 111 1457777777744
No 163
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.03 E-value=9.5e-05 Score=75.38 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=87.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC--ceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD--KILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
...-+.|||+.|.|||.|+.++++. ...... .++++ +.+.+...++..+... ..+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~------~se~f~~~~v~a~~~~---------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL------TSEDFTNDFVKALRDN---------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec------cHHHHHHHHHHHHHhh---------hHHHHHHhh
Confidence 4678999999999999999999994 444444 34443 3445666666655431 133344444
Q ss_pred CCceEEEEEeCCCCCCcc--CchhhhHhhhcC-CCCcEEEEEccch---------HHHhhhcccceEECCCCCHHHHHHH
Q 006588 131 AGKRFLLVLDDVWDGDYI--KWEPFYHCLKKG-LHGSKILITTRNE---------SIASMMRSTDVISIKELAEEECWAL 198 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~~--~~~~l~~~l~~~-~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~l~~~ea~~l 198 (639)
.-=++++||++-.... ....+...+... ..|..||+|++.. .+...+.+.-.+.+.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 3338899999653222 123333333332 2244799998642 2334455667899999999999999
Q ss_pred HHHHhhCCCCc
Q 006588 199 FKQLAFFGRST 209 (639)
Q Consensus 199 ~~~~~~~~~~~ 209 (639)
+...+......
T Consensus 253 L~kka~~~~~~ 263 (408)
T COG0593 253 LRKKAEDRGIE 263 (408)
T ss_pred HHHHHHhcCCC
Confidence 98876544443
No 164
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.02 E-value=1.2e-05 Score=80.90 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=66.1
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC--chHHHHHHHHHHccCC
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF--DEFRIAKAMLEALTGS 112 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~ 112 (639)
.--++.+.+.... .....+|.|++|+||||||+++++..... +|+.++||.+.+.. .+.++++.+...+-..
T Consensus 155 ~~~rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s 228 (416)
T PRK09376 155 LSTRIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS 228 (416)
T ss_pred cceeeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE
Confidence 3345555555443 34567888999999999999999864333 79999999987766 6677777776433222
Q ss_pred CCCcccH------HHHHHHHHHh-cCCceEEEEEeCCCC
Q 006588 113 TSNLDAL------QSLLISIDES-IAGKRFLLVLDDVWD 144 (639)
Q Consensus 113 ~~~~~~~------~~~~~~l~~~-l~~~~~LlvlDd~~~ 144 (639)
..+.... ....+..... -.++++||++|++..
T Consensus 229 t~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 229 TFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 2221111 1111111111 257899999999954
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.00 E-value=1.7e-05 Score=72.44 Aligned_cols=164 Identities=11% Similarity=0.116 Sum_probs=96.3
Q ss_pred CcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCC
Q 006588 17 RVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSET 95 (639)
Q Consensus 17 ~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~ 95 (639)
|...-.|..-.+.||-++.++++.-.-. ..+.+.+.|.||||+||||-+..+++. -....| ++++-+++++.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDE 89 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccc
Confidence 3344445555678999999999988776 335688999999999999999888773 123333 55655555554
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc--h
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN--E 173 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~--~ 173 (639)
...+-+...|-. +.... ...=.++.-++|||+.+.+.....+.++.-+.-.++-+++.+.... +
T Consensus 90 RGIDvVRn~IK~-FAQ~k-------------v~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 90 RGIDVVRNKIKM-FAQKK-------------VTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEK 155 (333)
T ss_pred cccHHHHHHHHH-HHHhh-------------ccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhh
Confidence 444333222211 11000 0001245668999999998766666677766655566666655543 2
Q ss_pred HHHhhhcccceEECCCCCHHHHHHHHHH
Q 006588 174 SIASMMRSTDVISIKELAEEECWALFKQ 201 (639)
Q Consensus 174 ~~~~~~~~~~~~~l~~l~~~ea~~l~~~ 201 (639)
.+......-..++...+++.....=+..
T Consensus 156 IiEPIQSRCAiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 156 IIEPIQSRCAILRYSKLSDQQILKRLLE 183 (333)
T ss_pred hhhhHHhhhHhhhhcccCHHHHHHHHHH
Confidence 2222222222445555565555443333
No 166
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.98 E-value=2.5e-05 Score=82.05 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=123.8
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|..-+++||-+-.+..|...+.... -......+|+-|+||||+|+.++.- .. +.. + ....+++.-..+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~Aka--lN--C~~--~-~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKA--LN--CEN--G-PTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHH--hc--CCC--C-CCCCcchhhhhh
Confidence 4455678999999999999998654 5688899999999999999888663 11 100 0 111222333333
Q ss_pred HHHHHHccC--------CCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALTG--------STSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~~--------~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
+.|...-.. ...+.+++.++.+.+.-. ..++.=+.|+|+++-.....++.+++-+.......++|+.|.+.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 333332110 011123333333333221 23455699999998888888999999999988888888888874
Q ss_pred H--HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCC
Q 006588 174 S--IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKG 228 (639)
Q Consensus 174 ~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 228 (639)
. ..+.+...+.+.++.++.++....+...+......-+ .+....|.+..+|
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~G 212 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEG 212 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCC
Confidence 3 3344566778999999999999999888865554332 2234556666655
No 167
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.98 E-value=0.0005 Score=69.92 Aligned_cols=206 Identities=14% Similarity=0.092 Sum_probs=128.0
Q ss_pred chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHH-HHhcChhhHHhcCCceEEEEeCC---CCchHHHHHHHHH
Q 006588 32 RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHDEVKRQFDKILWVCVSE---TFDEFRIAKAMLE 107 (639)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~ 107 (639)
|.+.+++|..||.... ...|+|+||-|+||+.|+ .++.++ ...++.++|.. ..+-..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 6788999999998554 479999999999999999 655542 23488888854 3455567777776
Q ss_pred HccC-----------------------CCCCc--ccHHHHHH-------HHHH-------------------hc---CCc
Q 006588 108 ALTG-----------------------STSNL--DALQSLLI-------SIDE-------------------SI---AGK 133 (639)
Q Consensus 108 ~l~~-----------------------~~~~~--~~~~~~~~-------~l~~-------------------~l---~~~ 133 (639)
+++- +..+. ....++.. .+++ ++ ...
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 6642 11111 11111111 1111 00 123
Q ss_pred eEEEEEeCCCCCCcc---CchhhhHhhhc--CCCCcEEEEEccchHHHh----hh--cccceEECCCCCHHHHHHHHHHH
Q 006588 134 RFLLVLDDVWDGDYI---KWEPFYHCLKK--GLHGSKILITTRNESIAS----MM--RSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~---~~~~l~~~l~~--~~~~~~ilvTsr~~~~~~----~~--~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
+-+||+||+..-... -|+.+..+-.. ..+-.+||+.|-+..... .+ ...+.+.+.-.+.+.|+.++..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 679999999553212 12333222111 234456888776643322 22 23568899999999999999998
Q ss_pred hhCCCCc-------------hh---hhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHH
Q 006588 203 AFFGRST-------------EE---CEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEEEW 249 (639)
Q Consensus 203 ~~~~~~~-------------~~---~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~ 249 (639)
....... .. .....+.....++..||=-.-|+.+++.++.+.++.+-
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~A 291 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEA 291 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHH
Confidence 8543111 00 01233446788899999999999999999988665433
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.97 E-value=2.3e-05 Score=76.94 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=60.5
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
..+.|+|++|+|||.||.++++. ...+...++|+++ .+++..+...+.... .....+. .+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~~----~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENEI----IRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHHH----HHHhcCCC
Confidence 46999999999999999999995 3333455677653 345555555443211 1112222 22234333
Q ss_pred EEEEEeCCCCCCccCc--hhhhHhhhcC-CCCcEEEEEccc
Q 006588 135 FLLVLDDVWDGDYIKW--EPFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~~--~~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
||||||+......+| ..+...+... ..+..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999954433333 3344444432 345568889874
No 169
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=8.6e-05 Score=81.38 Aligned_cols=180 Identities=16% Similarity=0.169 Sum_probs=99.3
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCc------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
..-.++.|.++..+++.+.+...... ..+.++-|.|+|++|+|||++|++++.. .. +-|+.++.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~-----~p~i~is~--- 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AE-----VPFFSISG--- 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC-----CCeeeccH---
Confidence 34456888887777776665322210 0123457999999999999999999773 22 22333321
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------cCc----hhhhHhhhc--CC
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY----------IKW----EPFYHCLKK--GL 161 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------~~~----~~l~~~l~~--~~ 161 (639)
.++. ..... .........+.......+++|+||+++.... ... ..++..+.. ..
T Consensus 250 -s~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 250 -SEFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred -HHHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111 11110 1112223334444567889999999964310 111 222222222 12
Q ss_pred CCcEEEEEccchHHHh-hh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCC
Q 006588 162 HGSKILITTRNESIAS-MM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKG 228 (639)
Q Consensus 162 ~~~~ilvTsr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 228 (639)
.+..||.||...+... .+ .....+.++..+.++..+++..++....... ......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~-----d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP-----DVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch-----hHHHHHHHhcCCC
Confidence 3556676776544222 11 2245789999999999999988875422211 1224667777776
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.95 E-value=4.1e-05 Score=67.43 Aligned_cols=90 Identities=21% Similarity=0.155 Sum_probs=48.5
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC-c
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG-K 133 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-~ 133 (639)
+.+.|+|++|+||||+++.++.. .......+++++............. ................ ...+...... +
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELR-LRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHH-HHHHHHHHHhcC
Confidence 57999999999999999999884 2222235666666544332222221 1111111111112222 2233333333 3
Q ss_pred eEEEEEeCCCCCCcc
Q 006588 134 RFLLVLDDVWDGDYI 148 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~ 148 (639)
..++++|+++.....
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999876433
No 171
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.91 E-value=0.00044 Score=70.71 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=98.7
Q ss_pred chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH-hcCCceEEEEeCCCCchH----HHHHHHH
Q 006588 32 RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK-RQFDKILWVCVSETFDEF----RIAKAML 106 (639)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~----~~~~~il 106 (639)
|+...+.|.+.+.... .+.+.+|+|.|+=|+|||++.+.+.+..+.. ..-..++|++........ .++.++.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELF 77 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHH
Confidence 4566788888888654 2478999999999999999999988743322 112455666665544433 3444444
Q ss_pred HHccCCCCC------------------------------------------------------------------cccHH
Q 006588 107 EALTGSTSN------------------------------------------------------------------LDALQ 120 (639)
Q Consensus 107 ~~l~~~~~~------------------------------------------------------------------~~~~~ 120 (639)
.++...... ....+
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T PF07693_consen 78 DQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVE 157 (325)
T ss_pred HHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHH
Confidence 443211000 00011
Q ss_pred HHHHHHHHhc--CCceEEEEEeCCCCCCccCchhhhHhhhcC--CCCcEEEEEccchHHHhhhcc---------------
Q 006588 121 SLLISIDESI--AGKRFLLVLDDVWDGDYIKWEPFYHCLKKG--LHGSKILITTRNESIASMMRS--------------- 181 (639)
Q Consensus 121 ~~~~~l~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~--~~~~~ilvTsr~~~~~~~~~~--------------- 181 (639)
+....+.+.+ ..+|+++|+||+|.-.......+...+... .+++.+|+..-...+......
T Consensus 158 ~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 158 ELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred HHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 1222233333 357999999999987666555555555432 256767766654443322110
Q ss_pred ----cceEECCCCCHHHHHHHHHHH
Q 006588 182 ----TDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 182 ----~~~~~l~~l~~~ea~~l~~~~ 202 (639)
.-.+.++..+..+-..++...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 225777888877777777665
No 172
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=1.6e-06 Score=91.56 Aligned_cols=193 Identities=21% Similarity=0.215 Sum_probs=110.7
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
.+..+.+..+.+..+-..+..+++|..+.+.+|.+ ..+... +..+++|++|++++|.+.. +.. +..+..|+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i------~~i~~~-l~~~~~L~~L~ls~N~I~~-i~~-l~~l~~L~ 143 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI------EKIENL-LSSLVNLQVLDLSFNKITK-LEG-LSTLTLLK 143 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccch------hhcccc-hhhhhcchheecccccccc-ccc-hhhccchh
Confidence 34444455555544444467788888887777774 232221 4567888888888888433 322 45566688
Q ss_pred EEeccCCCCcccchhhhcCCCccEEecCCCCCccccchh-hhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 470 YLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEG-IGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 470 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
.|++++|.|+.+. .+..++.|+.+++++|.+. .++.. ...+.+|+.+.+.+|.+... ..+..+..+..++ .
T Consensus 144 ~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~----l 215 (414)
T KOG0531|consen 144 ELNLSGNLISDIS-GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLS----L 215 (414)
T ss_pred hheeccCcchhcc-CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhh----c
Confidence 8888888888664 4455788888888888743 33332 46777888888888753221 2222222232222 1
Q ss_pred CCCccCCCccCCccccc--CCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 549 GRGCLDGRKACRLESLK--NLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.++.+... ..+..+. .|+.+++..|.+.... ..+..+..+..|++..+...
T Consensus 216 ~~n~i~~~--~~l~~~~~~~L~~l~l~~n~i~~~~--------~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 216 LDNKISKL--EGLNELVMLHLRELYLSGNRISRSP--------EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccceec--cCcccchhHHHHHHhcccCcccccc--------ccccccccccccchhhcccc
Confidence 11211111 1112222 2677888777643211 12556678888888877654
No 173
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=5.7e-06 Score=69.27 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=70.8
Q ss_pred HhhCCceeEEecCCCCCCCcccccccc-cCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCc
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKK-LIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMK 516 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 516 (639)
+.....|...++++|. ...+|..|.. ++.+..|++++|.|+++|..+..|+.|+.|+++.|. ....|..+..+.+|.
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence 4556778888888888 5666665544 457888899999999999888889999999998888 556677777788888
Q ss_pred eeecCCCCcccccccc
Q 006588 517 YLLNRDTDSVRYMPVG 532 (639)
Q Consensus 517 ~L~l~~n~~~~~~p~~ 532 (639)
.|+..+|. ...+|..
T Consensus 127 ~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVD 141 (177)
T ss_pred HhcCCCCc-cccCcHH
Confidence 88888885 4555544
No 174
>PRK08181 transposase; Validated
Probab=97.90 E-value=6.6e-05 Score=73.22 Aligned_cols=102 Identities=20% Similarity=0.137 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
...++|+|++|+|||.||.++++. ...+...++|+++ .++...+..... ....+.....+ . +
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l----~-~ 167 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL----D-K 167 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH----h-c
Confidence 345999999999999999999883 4444456677654 344444433321 11222222222 2 3
Q ss_pred eEEEEEeCCCCCCccCc--hhhhHhhhcCCCCcEEEEEccch
Q 006588 134 RFLLVLDDVWDGDYIKW--EPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~--~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.=||||||+.......+ ..+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34999999965433222 23455554432234588888753
No 175
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.90 E-value=0.00023 Score=70.93 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=83.1
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh-
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES- 129 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~- 129 (639)
-+.++.++|||++|+|||.+|++++.. ....| +-++.. ++.....+. .+..+.++.......
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e--lg~~~---i~vsa~----------eL~sk~vGE--sEk~IR~~F~~A~~~a 207 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK--MGIEP---IVMSAG----------ELESENAGE--PGKLIRQRYREAADII 207 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH--cCCCe---EEEEHH----------HhhcCcCCc--HHHHHHHHHHHHHHHh
Confidence 357899999999999999999999883 33322 222221 122222111 112233333222222
Q ss_pred -cCCceEEEEEeCCCCCC------ccCc------hhhhHhhh--------------cCCCCcEEEEEccchHHHh-hh-c
Q 006588 130 -IAGKRFLLVLDDVWDGD------YIKW------EPFYHCLK--------------KGLHGSKILITTRNESIAS-MM-R 180 (639)
Q Consensus 130 -l~~~~~LlvlDd~~~~~------~~~~------~~l~~~l~--------------~~~~~~~ilvTsr~~~~~~-~~-~ 180 (639)
-++++++|++|+++..- +... ..+...+- ....+..||+||...+... .+ .
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 25689999999986321 1111 11222110 1234567888887654322 11 1
Q ss_pred --ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 181 --STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 181 --~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
.... .+..-+.++-.+++..+....+.+. ..+.+|++..-|=|+
T Consensus 288 pGRfDk-~i~lPd~e~R~eIL~~~~r~~~l~~------~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 288 DGRMEK-FYWAPTREDRIGVVHGIFRDDGVSR------EDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCc-eeCCCCHHHHHHHHHHHhccCCCCH------HHHHHHHHcCCCCCc
Confidence 2211 2334577777778877665443321 225677777777665
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.88 E-value=7.9e-05 Score=70.96 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=77.4
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEe----CC-----CCc
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCV----SE-----TFD 97 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~----~~-----~~~ 97 (639)
..+.+|......+..++.. ...|.+.|++|+|||+||.+++.+.-..+.|..++-..- .+ +.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4467899999999998862 349999999999999999998875333444544433311 00 112
Q ss_pred hHH----HHHHHHHHccCCCCCcccHHHHHH----HH----HHhcCCce---EEEEEeCCCCCCccCchhhhHhhhcCCC
Q 006588 98 EFR----IAKAMLEALTGSTSNLDALQSLLI----SI----DESIAGKR---FLLVLDDVWDGDYIKWEPFYHCLKKGLH 162 (639)
Q Consensus 98 ~~~----~~~~il~~l~~~~~~~~~~~~~~~----~l----~~~l~~~~---~LlvlDd~~~~~~~~~~~l~~~l~~~~~ 162 (639)
..+ ...-+.+.+..-.. ....+.... .+ ..++++.. -++|+|++++.+ ...+...+-..+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~---~~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVT---AAQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCC---HHHHHHHHhhcCC
Confidence 222 22222222221100 011111110 00 02345554 499999998864 3455555566678
Q ss_pred CcEEEEEccch
Q 006588 163 GSKILITTRNE 173 (639)
Q Consensus 163 ~~~ilvTsr~~ 173 (639)
+|++|++.-..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999987543
No 177
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00014 Score=74.46 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=93.6
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH-------------------hcCCceE
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK-------------------RQFDKIL 88 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~~ 88 (639)
.++|-+....++..+...... .+..+.++|++|+||||+|.++++...-. +.++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467788888888888874432 45579999999999999999888742100 0224455
Q ss_pred EEEeCCCCc---hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcE
Q 006588 89 WVCVSETFD---EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSK 165 (639)
Q Consensus 89 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ 165 (639)
.++.+.... ..+..+++.+....... .++.-++|+|+++.+.....+.+++.+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 555554444 33444444444432221 35677999999998877667778888888888888
Q ss_pred EEEEccchH-HH-hhhcccceEECCC
Q 006588 166 ILITTRNES-IA-SMMRSTDVISIKE 189 (639)
Q Consensus 166 ilvTsr~~~-~~-~~~~~~~~~~l~~ 189 (639)
++++|.... +. +.......+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 888887432 22 2233455677766
No 178
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00035 Score=72.87 Aligned_cols=182 Identities=11% Similarity=0.118 Sum_probs=105.9
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcC------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQ------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
..-.++=|.++.+.+|.+++....... -.+++=|.+|||+|+|||.||++++.. .. +-|+.+...
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp-- 257 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP-- 257 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch--
Confidence 345568899999999998876532111 246678999999999999999999883 33 344444321
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------C-----chhhhHhhhcC------
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI------K-----WEPFYHCLKKG------ 160 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~------~-----~~~l~~~l~~~------ 160 (639)
+|..... ....+.+.+.+.+.....+|++++|+++-.... + ..+++..+-..
T Consensus 258 ------eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ------EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ------hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 2222221 122333444455555678999999999642111 1 22233333221
Q ss_pred CCCcEEEEEccchHH-Hhhh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 LHGSKILITTRNESI-ASMM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~-~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
+.+..||-+|..++. ...+ ...+.|.+.--+..+-.+++...+.+-+.... .+ ..+|++.+-|+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~-~d----~~qlA~lTPGfV 396 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD-FD----FKQLAKLTPGFV 396 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC-cC----HHHHHhcCCCcc
Confidence 223333333433332 2211 22557888888888888888887754444332 22 467777776654
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=7.7e-05 Score=79.42 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=103.9
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
.+..+.+.+-+|-++.-+++.++|.-..-...-...++++.||||+|||+|++.++. ...+.|. -+.++.-.+..
T Consensus 316 ~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEA 390 (782)
T COG0466 316 KAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEA 390 (782)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHH
Confidence 445566778899999999999998765542234457999999999999999999988 5666653 23455544444
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----------------CchhhhHhhhc--CC
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI----------------KWEPFYHCLKK--GL 161 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~----------------~~~~l~~~l~~--~~ 161 (639)
++-..==..++ +-....+..+.+ .+.++-|++||.++-+... +-..|.+.... +.
T Consensus 391 EIRGHRRTYIG------amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 391 EIRGHRRTYIG------AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred Hhccccccccc------cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 43211111111 111222333332 3567789999998543211 11112222111 11
Q ss_pred -CCcEEEEEccchH--HHhhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 162 -HGSKILITTRNES--IASMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 162 -~~~~ilvTsr~~~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
+...+|.|+.+-+ -...++..++|++.+++.+|=.++-.++.
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2344455544432 23445778999999999999988887766
No 180
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.82 E-value=6e-05 Score=76.36 Aligned_cols=91 Identities=16% Similarity=0.081 Sum_probs=61.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC--CchHHHHHHHHHHccCCCCCcccH------HHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET--FDEFRIAKAMLEALTGSTSNLDAL------QSLLI 124 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~------~~~~~ 124 (639)
....++|.|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.++..+-....+.... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 456799999999999999999988532 236888889988755 688899999855443322221111 11111
Q ss_pred HHHHh-cCCceEEEEEeCCCC
Q 006588 125 SIDES-IAGKRFLLVLDDVWD 144 (639)
Q Consensus 125 ~l~~~-l~~~~~LlvlDd~~~ 144 (639)
..... -.+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 12222 357899999999954
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.82 E-value=0.00039 Score=68.28 Aligned_cols=154 Identities=10% Similarity=0.077 Sum_probs=80.2
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH-------
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML------- 106 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il------- 106 (639)
+.++++..++.. .+-+.|.|++|+|||++|+.+++ ... ...+++++....+..++.....
T Consensus 9 ~l~~~~l~~l~~--------g~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 9 RVTSRALRYLKS--------GYPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred HHHHHHHHHHhc--------CCeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 334555555542 34578999999999999998875 222 2455667766555554433211
Q ss_pred -HHc----cCCCC-CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhc----------------CCCCc
Q 006588 107 -EAL----TGSTS-NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKK----------------GLHGS 164 (639)
Q Consensus 107 -~~l----~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~----------------~~~~~ 164 (639)
..+ ..... ....+. ...+....+ +...+++|+++.........+...+.. ..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~f 152 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWV--DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEF 152 (262)
T ss_pred HHHHHHHhhhhhcccceeec--CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCC
Confidence 000 00000 000000 001111111 345889999987665544555554432 11356
Q ss_pred EEEEEccchHH-------HhhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 165 KILITTRNESI-------ASMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 165 ~ilvTsr~~~~-------~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
+||+|+..... .........+.+.-.+.++-.+++.++.
T Consensus 153 rvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 153 RVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred EEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence 78888875321 1111223456676677777777776654
No 182
>PRK12377 putative replication protein; Provisional
Probab=97.82 E-value=3.6e-05 Score=74.11 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
...+.|+|++|+|||+||.++++. ...+...++++++. ++...+-..... ....... +. .+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l~-~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---LQ-EL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---HH-Hh-cC
Confidence 467999999999999999999994 44444556776554 344444443321 1111122 22 22 34
Q ss_pred eEEEEEeCCCCCCccCc--hhhhHhhhcCC-CCcEEEEEccc
Q 006588 134 RFLLVLDDVWDGDYIKW--EPFYHCLKKGL-HGSKILITTRN 172 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~--~~l~~~l~~~~-~~~~ilvTsr~ 172 (639)
.-||||||+.......| +.+...+.... ...-+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 56999999955433334 33444444432 22347888763
No 183
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.79 E-value=2.8e-05 Score=71.28 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=53.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
...-++|+|++|+|||.||.++++. ...+-..+.|++.. +++.. +.....+ ...+.....+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~~------~L~~~----l~~~~~~-~~~~~~~~~l~----- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITAS------DLLDE----LKQSRSD-GSYEELLKRLK----- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEHH------HHHHH----HHCCHCC-TTHCHHHHHHH-----
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeecC------ceecc----ccccccc-cchhhhcCccc-----
Confidence 4567999999999999999999884 33333457777643 33333 3322111 12222223222
Q ss_pred ceEEEEEeCCCCCCccCc--hhhhHhhhcCCCCcEEEEEccc
Q 006588 133 KRFLLVLDDVWDGDYIKW--EPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~--~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
+.=||||||+......+| ..+...+........+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 224888999966533332 2333334332222357888874
No 184
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00013 Score=77.27 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=100.7
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
.+-...+.+-||.++.-+++.+.+.-..--.+-+.++++++||+|+|||.+|+.++. ...++|. -++++.-.++.
T Consensus 404 ~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvA 478 (906)
T KOG2004|consen 404 RAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVA 478 (906)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHH
Confidence 455566778899999999999987644432245678999999999999999999988 4555552 23455444444
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCC---CccC-------------chhhhHhhhc-C--
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDG---DYIK-------------WEPFYHCLKK-G-- 160 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---~~~~-------------~~~l~~~l~~-~-- 160 (639)
++-..=-... ..-....++.+.+ .+..+-|+.||.|+-. .+.+ -..|.+...+ .
T Consensus 479 eIkGHRRTYV------GAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 479 EIKGHRRTYV------GAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred hhcccceeee------ccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc
Confidence 4321100001 0112333443433 3456678888887431 1111 1112222111 1
Q ss_pred CCCcEEEEEccchH--HHhhhcccceEECCCCCHHHHHHHHHHHhh
Q 006588 161 LHGSKILITTRNES--IASMMRSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 161 ~~~~~ilvTsr~~~--~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
-....+|.|...-+ -....+..+.|++.++..+|=+++-.++..
T Consensus 552 LSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 12233344433211 223346688999999999999888877763
No 185
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.77 E-value=0.0001 Score=68.26 Aligned_cols=130 Identities=23% Similarity=0.241 Sum_probs=68.2
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC----C-----chHH-
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET----F-----DEFR- 100 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~----~-----~~~~- 100 (639)
.+..+.....++|. ...+|.+.|++|+|||.||.+.+.+.-..++|+.++++.-.-. . +..+
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45667777777776 2468999999999999999988887656688888887742111 0 1111
Q ss_pred ---HHHHHHHHccCCCCCcccHHHHHHHH------HHhcCCc---eEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEE
Q 006588 101 ---IAKAMLEALTGSTSNLDALQSLLISI------DESIAGK---RFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILI 168 (639)
Q Consensus 101 ---~~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilv 168 (639)
...-+.+.+..-. .....+...+.- ..+++++ ..++|+|++++. ...++...+-+.+.+|++++
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~---t~~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNL---TPEELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG-----HHHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCC---CHHHHHHHHcccCCCcEEEE
Confidence 1122222222111 112222222110 0234443 579999999886 44555556667788999999
Q ss_pred Eccc
Q 006588 169 TTRN 172 (639)
Q Consensus 169 Tsr~ 172 (639)
+--.
T Consensus 152 ~GD~ 155 (205)
T PF02562_consen 152 TGDP 155 (205)
T ss_dssp EE--
T ss_pred ecCc
Confidence 9754
No 186
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.1e-05 Score=52.37 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=17.7
Q ss_pred CCcEEeccCCCCcccchhhhcCCCccEEecCCCC
Q 006588 467 HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCS 500 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 500 (639)
+|++|++++|+|+.+|+.++.|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555555555555555555554
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0009 Score=67.62 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCc
Q 006588 132 GKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRST 209 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~ 209 (639)
++.=++|+|+++.+.....+.+++.+....+++.+|++|.+.+ + .+..+....+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 3455889999999988888999999999888887776666543 3 33345567999999999999999877421
Q ss_pred hhhhHHHHHHHHHHHHcCCchhHHH
Q 006588 210 EECEKLEQIGQRIARKCKGLPLAAK 234 (639)
Q Consensus 210 ~~~~~~~~~~~~i~~~~~g~Plal~ 234 (639)
.. ...++..++|.|....
T Consensus 206 ~~-------~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 AD-------ADALLAEAGGAPLAAL 223 (342)
T ss_pred Ch-------HHHHHHHcCCCHHHHH
Confidence 11 1335677899996443
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.76 E-value=0.00028 Score=80.11 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=100.4
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF 96 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 96 (639)
..-.++.|.++..++|.+.+..+..+. -..++-+.++|++|+|||++|+++++. ....| +.+...
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~- 521 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP- 521 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH-
Confidence 344557888888888888765321110 124566899999999999999999883 33222 222211
Q ss_pred chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc-------cC-----chhhhHhhhc--CCC
Q 006588 97 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY-------IK-----WEPFYHCLKK--GLH 162 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-------~~-----~~~l~~~l~~--~~~ 162 (639)
+++....+ .....+...+...-...+++|+||+++.... .. ...++..+.. ...
T Consensus 522 -------~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -------EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -------HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 12222111 1111222233333356789999999864210 00 1223333332 123
Q ss_pred CcEEEEEccchHHHh-h-h---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 163 GSKILITTRNESIAS-M-M---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 163 ~~~ilvTsr~~~~~~-~-~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
+..||.||...+... . . .....+.++..+.++..++|..+..+.... ...+ ...+++.+.|+-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCC----HHHHHHHcCCCC
Confidence 455666776544322 1 1 235578899999999999997765432221 1111 466777787765
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.75 E-value=0.00018 Score=69.13 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
.+..+.+...... .+...+.++|.+|+|||+||.++++. ...+-..++++++ .++...+-.....
T Consensus 84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~--- 148 (244)
T PRK07952 84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN--- 148 (244)
T ss_pred HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---
Confidence 4445555554322 13457999999999999999999985 3333456666643 4454444443321
Q ss_pred CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchh--hhHhhhcC-CCCcEEEEEccc
Q 006588 115 NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEP--FYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 115 ~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~--l~~~l~~~-~~~~~ilvTsr~ 172 (639)
......... +.+. +.=||||||+......+|.. +...+... ...-.+||||..
T Consensus 149 ~~~~~~~~l----~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 149 SETSEEQLL----NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ccccHHHHH----HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 111222222 2233 33488899997765455543 33333332 223347778764
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.73 E-value=0.00032 Score=74.47 Aligned_cols=181 Identities=15% Similarity=0.089 Sum_probs=95.5
Q ss_pred CCCcccchhhHHHHHHHHhcc----CCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 26 EEEICGRVGERNALVSMLLCE----SSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~----~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
-.++.|.+...+.+.+..... ....-+.++-|.++|++|+|||.+|+++++. .... .+-++...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~---~~~l~~~~------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLP---LLRLDVGK------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEEhHH-------
Confidence 445778776665555432110 0001235678999999999999999999773 2211 12222211
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc--c---C-------chhhhHhhhcCCCCcEEEEE
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY--I---K-------WEPFYHCLKKGLHGSKILIT 169 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--~---~-------~~~l~~~l~~~~~~~~ilvT 169 (639)
+.....+ .........+...-...+++|++|+++..-. . + ...+...+.....+.-||.|
T Consensus 295 ---l~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hcccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1111110 1111222222222245789999999974211 0 0 12233334434445556667
Q ss_pred ccchHHH-hh----hcccceEECCCCCHHHHHHHHHHHhhCCCCch-hhhHHHHHHHHHHHHcCCch
Q 006588 170 TRNESIA-SM----MRSTDVISIKELAEEECWALFKQLAFFGRSTE-ECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 170 sr~~~~~-~~----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 230 (639)
|...... .. ....+.+.++.-+.++-.++|..+..+..... ... ....+++.+.|+-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~----dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKY----DIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccccc----CHHHHHhhcCCCC
Confidence 7654321 11 12345788888899999999988775432211 111 1466777776665
No 191
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.71 E-value=0.00028 Score=80.32 Aligned_cols=167 Identities=18% Similarity=0.223 Sum_probs=89.8
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
-..+.+|.++..+++.+++.............+.++|++|+|||++|+.++.. ....| +-+++....+..++...
T Consensus 318 l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 318 LDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC
Confidence 34558899999999988765332100223458999999999999999999873 33332 22333332222222110
Q ss_pred HHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC----chhhhHhhhc--------C-------CCCcE
Q 006588 105 MLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK----WEPFYHCLKK--------G-------LHGSK 165 (639)
Q Consensus 105 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~----~~~l~~~l~~--------~-------~~~~~ 165 (639)
.... ...........+... ...+.+++||+++...... ...+...+.. . ..+..
T Consensus 393 -----~~~~-~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 393 -----RRTY-VGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred -----CCce-eCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0000 001112222333333 2233478999997764321 1222222211 0 02344
Q ss_pred EEEEccchH-H-HhhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 166 ILITTRNES-I-ASMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 166 ilvTsr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
+|.||.... + .........+++.+++.++-.+++..+.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 556665432 1 2223456689999999999988887654
No 192
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=6.5e-06 Score=68.94 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred hhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhh
Q 006588 432 EILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGK 511 (639)
Q Consensus 432 ~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~ 511 (639)
.+|+.+-..++.++.|++++|. +..+|..+..++.|+.|+++.|++...|.-+..|.++-+|+..+|. ...+|-.+-.
T Consensus 67 ~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~dl~~ 144 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVDLFY 144 (177)
T ss_pred hCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHHHhc
Confidence 3445544556677788888888 6677777888888888888888888888888888888888887776 5556654333
Q ss_pred cccCceeecCCCCcccccc
Q 006588 512 LINMKYLLNRDTDSVRYMP 530 (639)
Q Consensus 512 l~~L~~L~l~~n~~~~~~p 530 (639)
-+++-..++.++.+.+.-|
T Consensus 145 s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 145 SSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccHHHHHhcCCcccccCc
Confidence 3333333444444433333
No 193
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1.2e-05 Score=88.86 Aligned_cols=137 Identities=25% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCceeEEecCCCCCC-Ccccccccc-cCCCcEEeccCCCCc--ccchhhhcCCCccEEecCCCCCccccchhhhhcccCc
Q 006588 441 LTSLRALDFPSLYLP-SEIPRNIKK-LIHLRYLNLSGQKIE--KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMK 516 (639)
Q Consensus 441 l~~L~~L~l~~n~~~-~~~p~~~~~-l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 516 (639)
-.+|++|+++|.... ...|..++. +|+|+.|.+++-.+. ++-.-..++++|..||+++++ +..+ .+++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~----- 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISR----- 193 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhc-----
Confidence 345666666664422 222333333 455665555554433 222223345555555555544 2222 33444
Q ss_pred eeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhccccccccc
Q 006588 517 YLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKK 596 (639)
Q Consensus 517 ~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~ 596 (639)
|.+|+.|.+.++...+ ...-..+.+|++|+.||++..+....- .....-..+-..++
T Consensus 194 -------------------LknLq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 194 -------------------LKNLQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLP 250 (699)
T ss_pred -------------------cccHHHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCc
Confidence 4444444433332221 011223455677777777665543221 11111122344578
Q ss_pred CcceEEEEecc
Q 006588 597 YLFSLTLKFDE 607 (639)
Q Consensus 597 ~L~~L~l~~~~ 607 (639)
+||.||.|.++
T Consensus 251 eLrfLDcSgTd 261 (699)
T KOG3665|consen 251 ELRFLDCSGTD 261 (699)
T ss_pred cccEEecCCcc
Confidence 89999988665
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.70 E-value=0.00035 Score=79.06 Aligned_cols=134 Identities=15% Similarity=0.197 Sum_probs=79.4
Q ss_pred CCCcccchhhHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
...++|.+..++.+.+.+.....+. ++....+.++|++|+|||+||+.+++. . +...+.++.++......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc--
Confidence 4458999999999999887532111 234567899999999999999999773 2 23455666544222111
Q ss_pred HHHHHHccCCCC--CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEE
Q 006588 103 KAMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILIT 169 (639)
Q Consensus 103 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvT 169 (639)
+...++.... +......+...++ ..+..+++||+++.+....++.+.+.+... -..+.||+|
T Consensus 526 --~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred --HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 1111221111 1112222333332 234579999999988766667777766542 124557777
Q ss_pred cc
Q 006588 170 TR 171 (639)
Q Consensus 170 sr 171 (639)
|.
T Consensus 601 sn 602 (731)
T TIGR02639 601 SN 602 (731)
T ss_pred CC
Confidence 74
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.69 E-value=0.0003 Score=80.55 Aligned_cols=136 Identities=15% Similarity=0.245 Sum_probs=78.8
Q ss_pred CCcccchhhHHHHHHHHhccCCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|.+..++.+...+.....+ .+++...+.++|++|+|||++|+.+++. ........+.++++.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-----
Confidence 35899999999999998754311 0223368999999999999999988763 2222233455555432111
Q ss_pred HHHHHccCCCCC---cccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEE
Q 006588 104 AMLEALTGSTSN---LDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILIT 169 (639)
Q Consensus 104 ~il~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvT 169 (639)
.....+.+..++ ......+...++ ..+.-+|+||+++..+...++.+...+... ...+.||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 112222221111 111122222222 233469999999887766777777766542 123447888
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 865
No 196
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.69 E-value=6.4e-06 Score=86.99 Aligned_cols=173 Identities=25% Similarity=0.256 Sum_probs=117.4
Q ss_pred cCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 386 SLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
...+++..+.+..+.+..+...+..|++|+.|+++.|.+ +.+.+ +..+..|+.|++++|.+ ..+.. +..+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I------~~i~~--l~~l~~L~~L~l~~N~i-~~~~~-~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI------TKLEG--LSTLTLLKELNLSGNLI-SDISG-LESL 161 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccc------ccccc--hhhccchhhheeccCcc-hhccC-Cccc
Confidence 345788899999998887775588899999998888884 33333 56677899999999994 33332 4458
Q ss_pred CCCcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcC--Cccc
Q 006588 466 IHLRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKS--LRTL 542 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~--L~~L 542 (639)
..|+.+++++|.+..+... ...+..++.+.+.+|.+. .+ ..+..+..+..+++..|.+...-+ +..+.. |+.+
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i-~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l 237 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EI-EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLREL 237 (414)
T ss_pred hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cc-cchHHHHHHHHhhcccccceeccC--cccchhHHHHHH
Confidence 8899999999999977654 578889999999988733 22 234455556666777776443322 222232 6666
Q ss_pred cceEecCCCccCCCccCCcccccCCCcCCceeeeC
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRG 577 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 577 (639)
.+....... .+..+..++.+..|++.+|+.
T Consensus 238 ~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 238 YLSGNRISR-----SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred hcccCcccc-----ccccccccccccccchhhccc
Confidence 632222111 225567788888888887774
No 197
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.69 E-value=0.0002 Score=71.51 Aligned_cols=122 Identities=12% Similarity=0.181 Sum_probs=73.0
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
+|........+++..... .+..+-+.|+|+.|+|||.||.++++. ...+-..+.|+.+. ++...+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 555555555555553332 224567999999999999999999994 43444456676553 45556555543
Q ss_pred CCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCch--hhhHhh-hcC-CCCcEEEEEccc
Q 006588 111 GSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWE--PFYHCL-KKG-LHGSKILITTRN 172 (639)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~--~l~~~l-~~~-~~~~~ilvTsr~ 172 (639)
. ....+....+ + +.=||||||+......+|. .++..+ ... ..+-.+++||.-
T Consensus 205 ~-----~~~~~~l~~l----~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKEKIDAV----K-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHHHHHHh----c-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 2 1222222222 2 4458999999766555564 354444 333 244558888863
No 198
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00039 Score=73.48 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=106.4
Q ss_pred CCCCCCCcccccccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc
Q 006588 11 SSERPRRVQSTSLIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ 83 (639)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~ 83 (639)
++......-..|.+.-+++=|-++.-.+|.+....+..+. -..++-|.+|||||+|||++|+++++ +-...
T Consensus 418 psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~n 495 (693)
T KOG0730|consen 418 PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMN 495 (693)
T ss_pred chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCC
Confidence 3333333334445555555566666666665554433221 25778999999999999999999988 45555
Q ss_pred CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC-----------chh
Q 006588 84 FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK-----------WEP 152 (639)
Q Consensus 84 f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~-----------~~~ 152 (639)
|-.+ ... +++.+.-+ .....+.+.+.+.-.-.+++++||.++...... +.+
T Consensus 496 Flsv-----kgp--------EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsq 557 (693)
T KOG0730|consen 496 FLSV-----KGP--------ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQ 557 (693)
T ss_pred eeec-----cCH--------HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHH
Confidence 5322 211 22333322 112223333333334567999999985421111 122
Q ss_pred hhHhhhcCC--CCcEEEEEccchHH-Hhhh-c---ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHH
Q 006588 153 FYHCLKKGL--HGSKILITTRNESI-ASMM-R---STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARK 225 (639)
Q Consensus 153 l~~~l~~~~--~~~~ilvTsr~~~~-~~~~-~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 225 (639)
++.-+.... .+.-||-.|..++. ...+ . -.+.+.++.-+.+...++|..++.+-..... .+ ..+|++.
T Consensus 558 LLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~-vd----l~~La~~ 632 (693)
T KOG0730|consen 558 LLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED-VD----LEELAQA 632 (693)
T ss_pred HHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc-cc----HHHHHHH
Confidence 222222222 22333333443332 2221 2 3557888888888888899998854443222 22 4677777
Q ss_pred cCCchh
Q 006588 226 CKGLPL 231 (639)
Q Consensus 226 ~~g~Pl 231 (639)
++|+--
T Consensus 633 T~g~SG 638 (693)
T KOG0730|consen 633 TEGYSG 638 (693)
T ss_pred hccCCh
Confidence 777653
No 199
>PRK09183 transposase/IS protein; Provisional
Probab=97.67 E-value=0.00026 Score=69.18 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=55.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
....++|+|++|+|||+||..++.. .......+.|++.. ++...+...... ... ...+... ..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~~~------~l~~~l~~a~~~-----~~~---~~~~~~~-~~ 163 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTTAA------DLLLQLSTAQRQ-----GRY---KTTLQRG-VM 163 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeHH------HHHHHHHHHHHC-----CcH---HHHHHHH-hc
Confidence 3456889999999999999999773 22333355565432 333333222111 111 1222222 23
Q ss_pred ceEEEEEeCCCCCCccCc--hhhhHhhhcC-CCCcEEEEEccc
Q 006588 133 KRFLLVLDDVWDGDYIKW--EPFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~--~~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
..-++|+||+........ ..+...+... ..++ +|+||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 456999999965322222 2344444432 2344 8888875
No 200
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=4.9e-05 Score=51.41 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=33.0
Q ss_pred CceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccc
Q 006588 442 TSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLP 482 (639)
Q Consensus 442 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp 482 (639)
++|++|++++|. +..+|..+++|++|++|++++|++++++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 478999999999 5577877899999999999999998765
No 201
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.67 E-value=8.5e-05 Score=78.96 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
.+..+++.++|++|.||||||.-+++.. - ..|+=|++++..+...+-..|...+.....-. .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----G-YsVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----G-YSVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----C-ceEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 6788999999999999999997665521 1 35788999999999888888888776443110 1
Q ss_pred CCceEEEEEeCCCCCCccCchhhhHhhh
Q 006588 131 AGKRFLLVLDDVWDGDYIKWEPFYHCLK 158 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~~~~~~l~~~l~ 158 (639)
.++|..||+|+++-......+.++..+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 4688999999997764333455555444
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.66 E-value=0.00029 Score=79.96 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=99.4
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF 96 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 96 (639)
..-+++.|.++.++++.+++.....+. -...+.+.|+|++|+|||+||+.+++. .... .+.++..
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~---~i~i~~~--- 246 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY---FISINGP--- 246 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe---EEEEecH---
Confidence 444458999999999998875321100 134567999999999999999998773 3222 2223221
Q ss_pred chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------C-----chhhhHhhhcCC-CCc
Q 006588 97 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI------K-----WEPFYHCLKKGL-HGS 164 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~------~-----~~~l~~~l~~~~-~~~ 164 (639)
++ ..... ..........+.......+.+|+||+++..... . ...+...+.... .+.
T Consensus 247 ---~i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 ---EI----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ---HH----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 11110 011122223333334566789999998643111 0 122333333322 233
Q ss_pred EEEE-EccchH-HHhhh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 165 KILI-TTRNES-IASMM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 165 ~ilv-Tsr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
.++| ||.... +...+ .....+.+...+.++..+++..+....... ... ....+++.+.|+--+
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~----~l~~la~~t~G~~ga 383 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDV----DLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-ccc----CHHHHHHhCCCCCHH
Confidence 3444 554432 11111 123467888889999989888655322211 111 156788888887643
No 203
>PRK04132 replication factor C small subunit; Provisional
Probab=97.65 E-value=0.00087 Score=75.18 Aligned_cols=155 Identities=13% Similarity=0.041 Sum_probs=102.6
Q ss_pred EEc--CCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceE
Q 006588 59 IVG--MGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRF 135 (639)
Q Consensus 59 i~G--~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 135 (639)
+.| |.++||||+|.+++++. ....+ ..++-+++++..+...+ ++++..+....+. -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCE
Confidence 347 88999999999998842 12222 34677788776555533 3333333211100 012457
Q ss_pred EEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhh
Q 006588 136 LLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECE 213 (639)
Q Consensus 136 LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~ 213 (639)
++|+|+++.......+.+++.+......+++|+++.+.. + .+..+....+.+.+++.++....+...+...+....
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-- 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-- 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 999999999987778888888888777888888777643 2 233344678999999999999888776643222111
Q ss_pred HHHHHHHHHHHHcCCchhHH
Q 006588 214 KLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 214 ~~~~~~~~i~~~~~g~Plal 233 (639)
.+....|++.++|.+...
T Consensus 711 --~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 234788999999988443
No 204
>PRK06526 transposase; Provisional
Probab=97.65 E-value=4.3e-05 Score=74.16 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=55.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
..+.++|+|++|+|||+||..++.. ....-..+.|++ ..++...+..... . .... ..+... .
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~--a~~~g~~v~f~t------~~~l~~~l~~~~~----~-~~~~---~~l~~l--~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIR--ACQAGHRVLFAT------AAQWVARLAAAHH----A-GRLQ---AELVKL--G 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHH--HHHCCCchhhhh------HHHHHHHHHHHHh----c-CcHH---HHHHHh--c
Confidence 4467999999999999999999874 332323444532 2344444433221 1 1111 122222 2
Q ss_pred ceEEEEEeCCCCCCccCc--hhhhHhhhcC-CCCcEEEEEccch
Q 006588 133 KRFLLVLDDVWDGDYIKW--EPFYHCLKKG-LHGSKILITTRNE 173 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~--~~l~~~l~~~-~~~~~ilvTsr~~ 173 (639)
+.-||||||+.......+ ..+...+... ..++ +|+||...
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 345899999975432222 2344444332 2344 88888754
No 205
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=3.7e-06 Score=79.56 Aligned_cols=175 Identities=18% Similarity=0.109 Sum_probs=106.3
Q ss_pred CceEEEEEEecccC--cccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcc--cccccc
Q 006588 389 EKVRHLMLIIGKES--TFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEI--PRNIKK 464 (639)
Q Consensus 389 ~~~~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~ 464 (639)
..+++++++...+. .+-.-++.|.+|+.|.++++.+ ...+... +..-.+|+.|++++|+-.... .-.+.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-----dD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-----DDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-----CcHHHHH-HhccccceeeccccccccchhHHHHHHHh
Confidence 56788888888663 3445567888999898888876 4455555 677788999999988754432 234567
Q ss_pred cCCCcEEeccCCCCc-ccch-hh-hcCCCccEEecCCCCCccc---cchhhhhcccCceeecCCCCcccc-ccccCCCCc
Q 006588 465 LIHLRYLNLSGQKIE-KLPE-AL-CELYNLEKLDICSCSCLKE---LPEGIGKLINMKYLLNRDTDSVRY-MPVGIARLK 537 (639)
Q Consensus 465 l~~L~~L~l~~~~l~-~lp~-~i-~~l~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~ 537 (639)
|..|..|+++.|.+. ..-. .+ .--..|..|+++||...-. +.--...+++|.+||++.|..+.. .-..|-+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 888888899888866 1111 11 1234677888888754311 111135678888888888754332 112344555
Q ss_pred CCccccceEecCCCccCCCccCC---cccccCCCcCCceee
Q 006588 538 SLRTLEEVRVSGRGCLDGRKACR---LESLKNLEHLQICGI 575 (639)
Q Consensus 538 ~L~~L~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~l~~n 575 (639)
.|++|.++.+-. .+|.. +..+|.|.+|++.++
T Consensus 339 ~L~~lSlsRCY~------i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYD------IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcC------CChHHeeeeccCcceEEEEeccc
Confidence 666665332211 12332 345566666665443
No 206
>PRK04296 thymidine kinase; Provisional
Probab=97.63 E-value=0.00012 Score=68.13 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=64.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC--cccHHHHHHHHHHhcCC
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN--LDALQSLLISIDESIAG 132 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~~ 132 (639)
.+++++|++|.||||+|..++.. ...+...++.+. ...+.......++..++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57899999999999999988874 333334444442 1112222233455555432221 1234444444444 233
Q ss_pred ceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH
Q 006588 133 KRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES 174 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~ 174 (639)
+.-+||+|.+.-.+..+...+...+. ..+..|++|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45689999995542222333333332 35778999998743
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.63 E-value=0.00012 Score=83.56 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=79.5
Q ss_pred CCcccchhhHHHHHHHHhccCC---cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|.+..+..+.+.+..... ..+++..++.++|++|+|||.+|+.++.. .-+.....+-++++..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 4589999999999998864321 11345568999999999999999988773 2222222333333221111 1
Q ss_pred HHHHHccCCCC--CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEc
Q 006588 104 AMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITT 170 (639)
Q Consensus 104 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTs 170 (639)
.+..-++.+.. +......+...++ +.+..+|+||+++..+...++.+...+.... .++.||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 11111221110 1111222333333 3556799999998877666677776665442 456678887
Q ss_pred cc
Q 006588 171 RN 172 (639)
Q Consensus 171 r~ 172 (639)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 64
No 208
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.63 E-value=0.00021 Score=77.29 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=91.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH--hcCC-ceEEE--EeCC-CCc
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK--RQFD-KILWV--CVSE-TFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f~-~~~wv--~~~~-~~~ 97 (639)
..-.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+.+..... ..|. ..-|+ ++.. ..+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 34446999999999999887532 34668999999999999999886532111 1121 12333 3322 111
Q ss_pred hHHHHHHHHHHccCCC-CCc-----cc-HHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC----------
Q 006588 98 EFRIAKAMLEALTGST-SNL-----DA-LQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG---------- 160 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~-~~~-----~~-~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~---------- 160 (639)
...+...++....... ... .. .+.....+. +.+.=+|+||+++.......+.++..+...
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~ 212 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN 212 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence 1111111111100000 000 00 000000011 223458999999888766666666655431
Q ss_pred ------------------CCCcEEEEEc-cchH-H-HhhhcccceEECCCCCHHHHHHHHHHHhh
Q 006588 161 ------------------LHGSKILITT-RNES-I-ASMMRSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 161 ------------------~~~~~ilvTs-r~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
....++|.+| ++.. + .........+.+.+++.+|..+++...+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred ccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 1123555554 4322 1 11122345788999999999888887664
No 209
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.61 E-value=0.00022 Score=81.92 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
...++|.+..++.+.+.+.....+ .++....+.+.|++|+|||++|+.++.. ....-...+.++++........
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-
Confidence 345899999999999999764321 0234567899999999999999998873 2222234455555543221111
Q ss_pred HHHHHHccCCCC--CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEE
Q 006588 103 KAMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILIT 169 (639)
Q Consensus 103 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvT 169 (639)
. ..++.+.. +-.....+...++ +.+..+|+||+++..+...++.+...+... ...+.||+|
T Consensus 641 ~---~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 641 A---RLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred H---HhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1 11221110 0111222333332 234469999999988777777777777543 134557777
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 210
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.61 E-value=0.00098 Score=69.41 Aligned_cols=166 Identities=21% Similarity=0.197 Sum_probs=98.3
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHc
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEAL 109 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 109 (639)
..|..-+.++.+.+.. ...+++|.|+-++||||+++.+... .... +++++..+......-..+.+..+
T Consensus 20 ~~~~~~~~~l~~~~~~-------~~~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~ 87 (398)
T COG1373 20 IERRKLLPRLIKKLDL-------RPFIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAY 87 (398)
T ss_pred hhHHhhhHHHHhhccc-------CCcEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHH
Confidence 3344555555555542 1229999999999999999655442 1111 56665544322222212222222
Q ss_pred cCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHH------hhhcccc
Q 006588 110 TGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIA------SMMRSTD 183 (639)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~------~~~~~~~ 183 (639)
. ..-..++..++||.|+.. ..|....+.+.+.+.. +|++|+.+.... ...+...
T Consensus 88 ~-----------------~~~~~~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 88 I-----------------ELKEREKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred H-----------------HhhccCCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCce
Confidence 1 111127789999999886 4788888888887766 788888764322 2235577
Q ss_pred eEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHH
Q 006588 184 VISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 235 (639)
Q Consensus 184 ~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 235 (639)
.+++.+|+..|-..+-.... . .. .. ...-.=+-.+||.|.++..
T Consensus 148 ~~~l~PlSF~Efl~~~~~~~----~-~~--~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 148 DLELYPLSFREFLKLKGEEI----E-PS--KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred eEEECCCCHHHHHhhccccc----c-hh--HH-HHHHHHHHHhCCCcHHHhC
Confidence 89999999999877643100 0 00 00 1123334467999987754
No 211
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=1e-06 Score=92.82 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.9
Q ss_pred cccccCCCCccEEEeeccccCC
Q 006588 405 PISTCRTKRIRSLLIECRRFDH 426 (639)
Q Consensus 405 ~~~~~~~~~L~~L~l~~~~l~~ 426 (639)
|-++..|+.|+.|.+++++++.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CceeccccceeeEEecCcchhh
Confidence 4456668888888888887653
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00062 Score=72.34 Aligned_cols=164 Identities=16% Similarity=0.027 Sum_probs=91.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc--hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD--EFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
..+.|.|.|+.|+|||+||++++.+.. +..+..+.+++|+.... .+.+++.+ ...+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHH
Confidence 457899999999999999999999654 55666777777764321 12222111 12233445
Q ss_pred CCceEEEEEeCCCCCCc------cCc----hhhhHhh----hcC-CCCc--EEEEEccchH-HHhhh----cccceEECC
Q 006588 131 AGKRFLLVLDDVWDGDY------IKW----EPFYHCL----KKG-LHGS--KILITTRNES-IASMM----RSTDVISIK 188 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~------~~~----~~l~~~l----~~~-~~~~--~ilvTsr~~~-~~~~~----~~~~~~~l~ 188 (639)
...|-++||||++-.-. .++ +.+..++ ..+ ..+. .+|.|..+.. +...+ -....+.+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67899999999853111 111 1111222 111 2233 3455544322 11111 113367889
Q ss_pred CCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc-hhHHHHHHh
Q 006588 189 ELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMGG 238 (639)
Q Consensus 189 ~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 238 (639)
..+.++-.+++.........+.. .+...-+..+|+|+ |.-++++..
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~~----~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDIT----MDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhhh----hHHHHHHHHhcCCccchhHHHHHH
Confidence 99998888888776543332221 11234477778765 455555443
No 213
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.59 E-value=0.00032 Score=73.04 Aligned_cols=157 Identities=12% Similarity=0.175 Sum_probs=83.7
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
...++||++.++.+...+.... .|.|.|++|+|||++|+.+.........|. ++.+.-. +..++...+
T Consensus 19 ~~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~---~~~~~ft-tp~DLfG~l 86 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFS-TPEEVFGPL 86 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcce---eeeeeec-CcHHhcCcH
Confidence 4569999999999999998554 499999999999999998877321111121 1222100 122221111
Q ss_pred -HHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC---------CCcEEEEEccchHH
Q 006588 106 -LEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL---------HGSKILITTRNESI 175 (639)
Q Consensus 106 -l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~---------~~~~ilvTsr~~~~ 175 (639)
+..... ...........+. ..-++++|+++.........++..+.... -..++++++.++-.
T Consensus 87 ~i~~~~~-------~g~f~r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP 158 (498)
T PRK13531 87 SIQALKD-------EGRYQRLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP 158 (498)
T ss_pred HHhhhhh-------cCchhhhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence 111100 0000000001111 11289999998876666677777774321 12245444443211
Q ss_pred H------hhhcc-cceEECCCCCHHHH-HHHHHHH
Q 006588 176 A------SMMRS-TDVISIKELAEEEC-WALFKQL 202 (639)
Q Consensus 176 ~------~~~~~-~~~~~l~~l~~~ea-~~l~~~~ 202 (639)
. ..... .-.+.++.++.++. .+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 1 11111 33678899975444 6777653
No 214
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00066 Score=74.00 Aligned_cols=185 Identities=17% Similarity=0.126 Sum_probs=109.4
Q ss_pred cCCCCcccchh---hHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRVG---ERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~---~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
+.-.++.|-++ |+.++++.|..+..++ .+-++=|.|+||+|+|||-||++++-. ..|-|++++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE-------AgVPF~svSGS-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE-------AGVPFFSVSGS-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc-------cCCceeeechH--
Confidence 44556777775 5555556666554433 355678999999999999999999873 24667766643
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------------CchhhhHhhhcCCC
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI---------------KWEPFYHCLKKGLH 162 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~---------------~~~~l~~~l~~~~~ 162 (639)
+..+.+.... .+.+. +.....-...|+++.+|+++..... .+++++.-+-.+..
T Consensus 379 ------EFvE~~~g~~--asrvr---~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ------EFVEMFVGVG--ASRVR---DLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ------HHHHHhcccc--hHHHH---HHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 3334443221 11122 2222233467899999988542111 12223222223322
Q ss_pred --CcEEEEEccchHHHhh-----hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 163 --GSKILITTRNESIASM-----MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 163 --~~~ilvTsr~~~~~~~-----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
+..++-+|+..++... -...+.+.++.-+.....++|..++.......+.. ++.. |+..+-|++-|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~---dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDV---DLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchh---hHHH-HHhcCCCCcHH
Confidence 3334445555443322 13366889999999999999999986555542322 2344 88888888854
No 215
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.001 Score=67.19 Aligned_cols=70 Identities=7% Similarity=0.104 Sum_probs=51.2
Q ss_pred ceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-HH-hhhcccceEECCCCCHHHHHHHHHHH
Q 006588 133 KRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-IA-SMMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~-~~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
++-++|+|+++..+....+.+.+.+.....++.+|++|.+.. +. ........+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344556799988877777888888887766677777777643 32 22344568899999999999988664
No 216
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.58 E-value=0.0008 Score=65.40 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=99.8
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCch-----H
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDE-----F 99 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~-----~ 99 (639)
-..++|-.++.+.+.+++....- -+....|.|.||.|.|||+|......+ ...+ ...+-|.+...... .
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHH
Confidence 34689999999999998875543 345567999999999999999777664 3334 33444444433322 2
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcC------CceEEEEEeCCCCCCccCchhhhHhhh-----cCCCCcEEEE
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIA------GKRFLLVLDDVWDGDYIKWEPFYHCLK-----KGLHGSKILI 168 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~------~~~~LlvlDd~~~~~~~~~~~l~~~l~-----~~~~~~~ilv 168 (639)
.+.+++..++........+..+....+...++ +-++++|+|++|-...-.-+.+...+- ...+-|.|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 33333333333222222333443444443333 346899999987654444333333332 2346677889
Q ss_pred EccchH-------HHhhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 169 TTRNES-------IASMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 169 Tsr~~~-------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
|||-.. +........++-+..+..++-++++....
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 998532 22222223344455567777777776654
No 217
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.58 E-value=0.00044 Score=78.00 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=102.2
Q ss_pred cccCCCCCCC--CcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC
Q 006588 7 SVSKSSERPR--RVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF 84 (639)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f 84 (639)
+.+|...... ....+....+.+.+|.++.-+++.++|.............++++|++|+||||+|+.++. .....|
T Consensus 300 ~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 300 QVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 3555533322 223444556677999999999999888743211122456899999999999999998876 233222
Q ss_pred CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC----chhhhHhhhcC
Q 006588 85 DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK----WEPFYHCLKKG 160 (639)
Q Consensus 85 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~----~~~l~~~l~~~ 160 (639)
+-++++...+..++...- ....+. ........+... ...+.+++||+++...... ...+...+...
T Consensus 378 ---~~i~~~~~~d~~~i~g~~-~~~~g~-----~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~ 447 (784)
T PRK10787 378 ---VRMALGGVRDEAEIRGHR-RTYIGS-----MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPE 447 (784)
T ss_pred ---EEEEcCCCCCHHHhccch-hccCCC-----CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccc
Confidence 224444433333222111 111111 111222223322 2234578999997654321 23333333220
Q ss_pred ---------------CCCcEEEEEccchHHH-hhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 161 ---------------LHGSKILITTRNESIA-SMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 161 ---------------~~~~~ilvTsr~~~~~-~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
-....+|.|+....+. ...+....+++.+++.+|-.++...+.
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 1344455565543322 223556789999999999999987765
No 218
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00051 Score=76.83 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCcccchhhHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|.++.++.+.+.+.....+. .++...+.++|++|+|||++|+.++.. .. ...+.+++++.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----
Confidence 357999999999999987432110 234568999999999999999988773 22 334455554332211
Q ss_pred HHHHHccCCCC--CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEc
Q 006588 104 AMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITT 170 (639)
Q Consensus 104 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTs 170 (639)
.+..-++.+.. +......+.+.+. +.+..+|+||+++......++.+...+.... .++.||+||
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 11112222110 0011112222222 2345799999999887666666766665321 245577787
Q ss_pred c
Q 006588 171 R 171 (639)
Q Consensus 171 r 171 (639)
.
T Consensus 606 N 606 (758)
T PRK11034 606 N 606 (758)
T ss_pred C
Confidence 6
No 219
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.57 E-value=0.00066 Score=63.42 Aligned_cols=182 Identities=17% Similarity=0.171 Sum_probs=99.6
Q ss_pred cCCCCcccchhhHH---HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 24 IDEEEICGRVGERN---ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 24 ~~~~~~vgR~~~~~---~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
+.-++.||.++.-. -|.++|..+....+=-++.|..+|++|.|||.+|+++++. .+- ..+-|.+.+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kv---p~l~vkat~------ 186 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKV---PLLLVKATE------ 186 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCC---ceEEechHH------
Confidence 33455788876543 4667777665443445789999999999999999999883 221 122222221
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC----ccC--------chhhhHhhhc--CCCCcEE
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD----YIK--------WEPFYHCLKK--GLHGSKI 166 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----~~~--------~~~l~~~l~~--~~~~~~i 166 (639)
+.. +-.+ ++...+.++.+ +.-+..+|++++|.++-.. +++ .+.++.-+.. .+.|...
T Consensus 187 liG---ehVG---dgar~Ihely~---rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 187 LIG---EHVG---DGARRIHELYE---RARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHH---HHhh---hHHHHHHHHHH---HHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 111 1111 01112222222 2224579999999885321 111 1122222221 2346666
Q ss_pred EEEccchHHHhhh---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 167 LITTRNESIASMM---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 167 lvTsr~~~~~~~~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
|..|...++.... ...+.|+..--+.+|-.+++..++..-..+-+. ..+.++.+++|.-
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~-----~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA-----DLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc-----CHHHHHHHhCCCC
Confidence 6667666544332 224577777788999999998887433322111 1355666665543
No 220
>PRK06921 hypothetical protein; Provisional
Probab=97.56 E-value=0.00037 Score=68.27 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=56.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhc-CCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-FDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
....++++|++|+|||+||.++++. ...+ ...++|+... +++..+...+ +.....+. .+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RMK 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hhc
Confidence 3567999999999999999999884 4433 4567777652 2333332221 11111122 222
Q ss_pred CceEEEEEeCCCC-----CCccCch--hhhHhhhcCC-CCcEEEEEccc
Q 006588 132 GKRFLLVLDDVWD-----GDYIKWE--PFYHCLKKGL-HGSKILITTRN 172 (639)
Q Consensus 132 ~~~~LlvlDd~~~-----~~~~~~~--~l~~~l~~~~-~~~~ilvTsr~ 172 (639)
..-||||||+.. ....+|. .+...+.... .+..+||||..
T Consensus 177 -~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 -KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred -CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999933 2112332 3444444332 23458888864
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0022 Score=59.47 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=68.3
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
+++.=..++|-+...+.|.+.-..... ..+.--|.+||.-|+|||+|++++.+ +...+.-..+=| .
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV--~-------- 120 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEV--D-------- 120 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEE--c--------
Confidence 334444589999999999887655444 55678899999999999999999988 455444332221 1
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhh
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLK 158 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~ 158 (639)
..+......+++.++. ..++++|+.||+.=+ ....+..+...+.
T Consensus 121 -----------k~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 121 -----------KEDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred -----------HHHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 1111222223333322 467999999998433 2234455544443
No 222
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.54 E-value=0.0006 Score=68.77 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=65.8
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-Cc-eEEEEeC-CCCchHHHHHHHHHHcc
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DK-ILWVCVS-ETFDEFRIAKAMLEALT 110 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~-~~wv~~~-~~~~~~~~~~~il~~l~ 110 (639)
....++.+.+.... ....++|.|++|+|||||++.+++. ...+. +. ++|+-+. ...++.++++.++..+.
T Consensus 118 ~~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 118 DLSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred chhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 35556777776543 2356799999999999999998884 43333 33 3565554 45577899999988777
Q ss_pred CCCCCcccHH------HHHHHHHHh-cCCceEEEEEeCCC
Q 006588 111 GSTSNLDALQ------SLLISIDES-IAGKRFLLVLDDVW 143 (639)
Q Consensus 111 ~~~~~~~~~~------~~~~~l~~~-l~~~~~LlvlDd~~ 143 (639)
....+..... ...+....+ -.+++++||+|++.
T Consensus 191 ast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 191 ASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 6543222211 111111111 14789999999984
No 223
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.53 E-value=0.00026 Score=81.05 Aligned_cols=138 Identities=13% Similarity=0.187 Sum_probs=79.7
Q ss_pred CCCcccchhhHHHHHHHHhccCC---cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
...++|.+..+..+.+.+..... ..+++...+.++||+|+|||+||+.+++. .-+.-...+-++.++.......
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-
Confidence 35689999999999998863321 11234467889999999999999998773 2222223444444432221111
Q ss_pred HHHHHHccCCC--CCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEE
Q 006588 103 KAMLEALTGST--SNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILIT 169 (639)
Q Consensus 103 ~~il~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvT 169 (639)
...++.+. .+-.....+...++ ..+..+++||+++.++...++.+.+.+... ...+.||+|
T Consensus 585 ---~~l~g~~~gyvg~~~~~~l~~~~~---~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGGQLTEAVR---KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HHhcCCCCcccCcCccchHHHHHH---hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11112111 01111222322222 234469999999988767677777776642 135667777
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 224
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0014 Score=72.04 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=91.3
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC------ceEEEEeCCCCchHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD------KILWVCVSETFDEFR 100 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~------~~~wv~~~~~~~~~~ 100 (639)
+..+||++|+.++.+.|..- ..---++.|++|+|||+++.-+++.. ..+.-+ .++=++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR------~KNNPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~sLD~-------- 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRR------TKNNPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYSLDL-------- 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhcc------CCCCCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEEecH--------
Confidence 45899999999999999844 33455788999999999998777731 111111 1111111
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcC-CceEEEEEeCCCCCC--------ccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIA-GKRFLLVLDDVWDGD--------YIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~~--------~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
.....+. .-..+.+++...+.+.++ .++++|++|.++..- ..+...+++.....+.-.+|-.||-
T Consensus 235 -----g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 -----GSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTL 308 (786)
T ss_pred -----HHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccH
Confidence 1111111 112445555555555444 458999999985421 0122223332223333334666776
Q ss_pred chHHH------hhhcccceEECCCCCHHHHHHHHHHH
Q 006588 172 NESIA------SMMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 172 ~~~~~------~~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
++... ..-...+.+.|..-+.+++..++...
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 53211 11244779999999999999998664
No 225
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=3.5e-05 Score=73.11 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=42.3
Q ss_pred CCceeEEecCCCCCCCc--ccccccccCCCcEEeccCCCCcccchhh-hcCCCccEEecCCCCCcc-ccchhhhhcccCc
Q 006588 441 LTSLRALDFPSLYLPSE--IPRNIKKLIHLRYLNLSGQKIEKLPEAL-CELYNLEKLDICSCSCLK-ELPEGIGKLINMK 516 (639)
Q Consensus 441 l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~ 516 (639)
+..++.+||.+|.+..+ +...+.++++|++|+++.|++..--.+. ..+.+|++|-|.++.+.. ..-..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45566666666664322 2334455666666666666654221222 345566666665554322 2223345556666
Q ss_pred eeecCCC
Q 006588 517 YLLNRDT 523 (639)
Q Consensus 517 ~L~l~~n 523 (639)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666655
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00022 Score=69.24 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=59.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
...-++++|++|+|||.||.++++. ....-..+.++++ .++..++...... ......+...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~----~~~~~~l~~~l~----- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE----GRLEEKLLRELK----- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc----CchHHHHHHHhh-----
Confidence 4567999999999999999999994 4443456777654 4566666666553 111112222121
Q ss_pred ceEEEEEeCCCCCCccCch--hhhHhhhcC-CCCcEEEEEccc
Q 006588 133 KRFLLVLDDVWDGDYIKWE--PFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~~--~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
+-=||||||+.......|. .+...+... ...+ .++||..
T Consensus 167 ~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~-~~~tsN~ 208 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRS-LIITSNL 208 (254)
T ss_pred cCCEEEEecccCccCCHHHHHHHHHHHHHHHhhcc-ceeecCC
Confidence 2238999999765444432 233333332 2233 3777764
No 227
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.51 E-value=0.0005 Score=66.06 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
..|.++|...- +...++.|+|++|+|||++|.+++.. .......++|++.. ..+..
T Consensus 10 ~~lD~~l~GGi----~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~ 65 (225)
T PRK09361 10 KMLDELLGGGF----ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPE 65 (225)
T ss_pred HHHHHHhcCCC----CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHH
Confidence 44666664332 25689999999999999999999874 33445789999987 44443
No 228
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.51 E-value=0.00054 Score=65.52 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
+..|.++|...- +...++.|+|++|+|||++|.+++.. ...+-..++|++....+.
T Consensus 5 i~~LD~~l~GGi----~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 5 CKGLDELLGGGV----ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred hhHHHHHhcCCc----cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 345666665332 25789999999999999999999873 334445788888765543
No 229
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0032 Score=62.52 Aligned_cols=169 Identities=11% Similarity=0.061 Sum_probs=99.8
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChh--------hHHhcCCceEEEEe-CCCCchHHHHHHHH
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHD--------EVKRQFDKILWVCV-SETFDEFRIAKAML 106 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~il 106 (639)
++.+...+... +-.++..++|+.|+||+++|..+++.. ....+.+.+.+++. +.....++ .+++.
T Consensus 5 ~~~l~~~i~~~-----~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~-Ir~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-----KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSE-FLSAI 78 (299)
T ss_pred HHHHHHHHHhC-----CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHH-HHHHH
Confidence 45566666532 256788899999999999998887632 00111112233321 11111111 11222
Q ss_pred HHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch-HHH-hhhcccce
Q 006588 107 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE-SIA-SMMRSTDV 184 (639)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~-~~~~~~~~ 184 (639)
+.+.... .-.+++=++|+|+++.......+.+++.+...+..+.+|++|.+. .+. +.......
T Consensus 79 ~~~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 79 NKLYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred HHhccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 2221110 002467788999998887667788999999988888877766543 333 33455779
Q ss_pred EECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHH
Q 006588 185 ISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 235 (639)
Q Consensus 185 ~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 235 (639)
+++.+++.++..+.+.... .+. +.+..++...+|.=-|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~~----~~~------~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN----KEK------EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC----CCh------hHHHHHHHHcCCHHHHHHH
Confidence 9999999999998876631 111 1145566666663344444
No 230
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0021 Score=66.06 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=78.6
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
..+...|.++|++|+|||+||..++. ...|+.+--++..+- .+. +...-.......+....
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~--sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGL--SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCc--cHHHHHHHHHHHHHHhh
Confidence 55778999999999999999988855 456665543332221 111 11122333444455566
Q ss_pred CCceEEEEEeCCCCCC-cc---------CchhhhHhhhcCC-CCcE--EEEEccchHHHhhhcc----cceEECCCCCH-
Q 006588 131 AGKRFLLVLDDVWDGD-YI---------KWEPFYHCLKKGL-HGSK--ILITTRNESIASMMRS----TDVISIKELAE- 192 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~-~~---------~~~~l~~~l~~~~-~~~~--ilvTsr~~~~~~~~~~----~~~~~l~~l~~- 192 (639)
+++--+||+||++..- .. ..+.+.-.+.... .|.+ |+-||....+.+.++. ...+.++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 7777899999995421 01 1222333333322 2333 4555666666665543 44789999987
Q ss_pred HHHHHHHHHH
Q 006588 193 EECWALFKQL 202 (639)
Q Consensus 193 ~ea~~l~~~~ 202 (639)
++..+.+...
T Consensus 676 ~~~~~vl~~~ 685 (744)
T KOG0741|consen 676 EQLLEVLEEL 685 (744)
T ss_pred HHHHHHHHHc
Confidence 6777777664
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.49 E-value=0.00028 Score=71.08 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=58.3
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
..+.++|++|+|||.||.++++. ...+-..|+|+++. ++...+...-... ......... .+. ..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~~~----~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFNN---DKELEEVYD----LLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHHHH----Hhc-cC
Confidence 67999999999999999999984 44444567777654 2333333321111 111111112 122 22
Q ss_pred EEEEEeCCCCCCccCc--hhhhHhhhcC-CCCcEEEEEccc
Q 006588 135 FLLVLDDVWDGDYIKW--EPFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~~--~~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
=||||||+......+| ..+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999966533333 3445445443 234458888874
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.48 E-value=0.00046 Score=65.48 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
...++.|+|++|+|||++|..++.. ...+...++|++... ++...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl 56 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERF 56 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHH
Confidence 5789999999999999999988773 334456899999976 444443
No 233
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.46 E-value=0.00072 Score=59.96 Aligned_cols=116 Identities=20% Similarity=0.167 Sum_probs=67.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC---CchHHHHHHHHHHc-----cCC----CCC-ccc---
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET---FDEFRIAKAMLEAL-----TGS----TSN-LDA--- 118 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l-----~~~----~~~-~~~--- 118 (639)
++|-|++..|.||||+|...+. +..++-..+.++..-+. ......+..+ ..+ +.. ..+ ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999977766 34444445666554332 2333333332 101 000 000 011
Q ss_pred HHHHHHHHHHhcCCc-eEEEEEeCCCCC---CccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 119 LQSLLISIDESIAGK-RFLLVLDDVWDG---DYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~-~~LlvlDd~~~~---~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+..+..++.+... -=|+|||++-.+ ...+.+.+...+.....+..+|+|.|..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111122223333343 449999998543 3345677888888888888999999984
No 234
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.45 E-value=0.0016 Score=64.64 Aligned_cols=163 Identities=11% Similarity=0.051 Sum_probs=85.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..+..|+=+.+....+...+.. .+.|.|.|++|+|||++|+.++. .... ..+.|++....+..++..
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~---~~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNW---PCVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCC---CeEEEEecCCCChhhcCC
Confidence 3344566676777777777752 24599999999999999999887 3332 234566666655544433
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhh--------c------CCCCcEEEEE
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLK--------K------GLHGSKILIT 169 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~--------~------~~~~~~ilvT 169 (639)
.-.-.+.... ..... .-..+-.. ..+++++++|+++.........+...+. . ..+..+++.|
T Consensus 109 ~~~~~l~~g~-~~~~f--~~GpL~~A-~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT 184 (327)
T TIGR01650 109 KDAIVLKDGK-QITEF--RDGILPWA-LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFAT 184 (327)
T ss_pred CceeeccCCc-ceeEE--ecCcchhH-HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEe
Confidence 2111110000 00000 00001111 1345789999997654333333222221 1 2235566777
Q ss_pred ccchHHH--------------hhhcccc-eEECCCCCHHHHHHHHHHHh
Q 006588 170 TRNESIA--------------SMMRSTD-VISIKELAEEECWALFKQLA 203 (639)
Q Consensus 170 sr~~~~~--------------~~~~~~~-~~~l~~l~~~ea~~l~~~~~ 203 (639)
....... ..++... .+.++-++.++=.+++....
T Consensus 185 ~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 185 ANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 6543210 1112222 34677788888778776654
No 235
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.45 E-value=0.00042 Score=65.78 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEe
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCV 92 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 92 (639)
.-.++|.|.+|+|||+|+..+.. .....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34688999999999999999987 47778877766643
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.45 E-value=8.7e-05 Score=65.19 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=64.3
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHc
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEAL 109 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 109 (639)
||+...++++.+.+..... ...-|.|+|++|+||+++|+.+.+.... .....+-+++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-------------
Confidence 5778888888888776543 5567899999999999999877653111 11110001111110
Q ss_pred cCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-CCCcEEEEEccc
Q 006588 110 TGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
.+.+... +.--|+|+|++.........+...+... ....++|.||..
T Consensus 62 -------------~~~l~~a---~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 -------------AELLEQA---KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -------------HHHHHHC---TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -------------HHHHHHc---CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111111 3335779999887666666677777643 567899999875
No 237
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=1e-05 Score=85.44 Aligned_cols=125 Identities=20% Similarity=0.060 Sum_probs=73.9
Q ss_pred CCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 467 HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
.|.+.+.+.|.+..+-.++.-++.|+.|+|+.|++. .+. .+..++.|++||+++|. +..+|..-..-..|+.|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 455556666666666667777888888888888743 333 47778888888888885 455664221122366665322
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
+.... ...+.++++|+.|+++.|-+.+ .. ....++.+..|+.|.|..|
T Consensus 242 N~l~t------L~gie~LksL~~LDlsyNll~~-hs-----eL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 242 NALTT------LRGIENLKSLYGLDLSYNLLSE-HS-----ELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cHHHh------hhhHHhhhhhhccchhHhhhhc-ch-----hhhHHHHHHHHHHHhhcCC
Confidence 21111 3346677777777777775421 11 1122556667777777654
No 238
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.43 E-value=0.00023 Score=64.47 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=69.8
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
+||....++++.+.+..... ...-|.|+|++|+||+.+|+.+.+. ....-..-+-|+|..- +.+.+..++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchhhhhhhcc
Confidence 47888888888888876654 3466889999999999999888662 1112223344555533 223222222221
Q ss_pred ccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEEccc
Q 006588 109 LTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILITTRN 172 (639)
Q Consensus 109 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTsr~ 172 (639)
-.....+... .....+... ..=.|+||+++.........+..++... ...++||.||..
T Consensus 74 ~~~~~~~~~~--~~~G~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSS--EBEHHHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccc--ccCCceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 1111011100 001122221 1226789999887655556677776532 125678888874
No 239
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00033 Score=76.83 Aligned_cols=136 Identities=15% Similarity=0.266 Sum_probs=81.8
Q ss_pred CCcccchhhHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|.+..+..+.+++.....+- +++.+.....||.|||||.||+.++.. .-+.=...+-++.++.... +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~Ek----H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEK----H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHH----H
Confidence 458999999999988876544322 456678899999999999999998773 2211134444444432111 1
Q ss_pred HHHHHccCCCC--CcccHHHHHHHHHHhcCCceE-EEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEE
Q 006588 104 AMLEALTGSTS--NLDALQSLLISIDESIAGKRF-LLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILIT 169 (639)
Q Consensus 104 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvT 169 (639)
.+-+-++.+.. +-..-..+ .+..+.+|| +|.||+++-++...++.|++.+-+.. .++.||+|
T Consensus 565 sVSrLIGaPPGYVGyeeGG~L----TEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQL----TEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred HHHHHhCCCCCCceeccccch----hHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 12222222211 11122222 223355655 88899999888777777777776421 25557777
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
|.-
T Consensus 641 SN~ 643 (786)
T COG0542 641 SNA 643 (786)
T ss_pred ccc
Confidence 763
No 240
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=5.5e-06 Score=78.45 Aligned_cols=181 Identities=19% Similarity=0.187 Sum_probs=126.3
Q ss_pred CccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCC-Cccc--chhhhcCC
Q 006588 413 RIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQK-IEKL--PEALCELY 489 (639)
Q Consensus 413 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~-l~~l--p~~i~~l~ 489 (639)
.|+.++++ ...+...-...+++.|.+|+.|.+.++.+...+-..+..-.+|+.|+++.|. +++. .--+.++.
T Consensus 186 Rlq~lDLS-----~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLS-----NSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcc-----hhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 46666444 4444555566778899999999999999877777778888899999999876 6633 23467899
Q ss_pred CccEEecCCCCCccccchh-hhhc-ccCceeecCCCCcc---ccccccCCCCcCCccccceEecCCCccCCCccCCcccc
Q 006588 490 NLEKLDICSCSCLKELPEG-IGKL-INMKYLLNRDTDSV---RYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESL 564 (639)
Q Consensus 490 ~L~~L~l~~~~~~~~lp~~-~~~l-~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l 564 (639)
.|..|++++|....+.-.. +... ++|..|+++|+... ..+..-...+++|.+|+++++.. ++......|.++
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~---l~~~~~~~~~kf 337 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM---LKNDCFQEFFKF 337 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc---cCchHHHHHHhc
Confidence 9999999999865433211 2222 57889999997421 11111235688999998655432 222334457788
Q ss_pred cCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEecc
Q 006588 565 KNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDE 607 (639)
Q Consensus 565 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 607 (639)
+.|++|.++.+... +|+ ....+..+++|.+|++..+.
T Consensus 338 ~~L~~lSlsRCY~i--~p~----~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI--IPE----TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcCC--ChH----HeeeeccCcceEEEEecccc
Confidence 99999999888642 232 33458889999999998664
No 241
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.38 E-value=6.3e-05 Score=66.24 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=47.9
Q ss_pred EEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEE
Q 006588 57 ISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFL 136 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 136 (639)
|.|+|++|+|||+||+.+++. .. ....-+.+....+..++....--. .... .-....+.... .++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-cccc--ccccccccccc-----cceeE
Confidence 789999999999999988873 31 234446677777777664432221 0000 00000000000 17899
Q ss_pred EEEeCCCCCCccCchhhhHhh
Q 006588 137 LVLDDVWDGDYIKWEPFYHCL 157 (639)
Q Consensus 137 lvlDd~~~~~~~~~~~l~~~l 157 (639)
+|||+++......+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999876533334444443
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0015 Score=66.23 Aligned_cols=114 Identities=9% Similarity=0.063 Sum_probs=63.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
.+++|+|.|++|+||||++..++.. ...+-..+..++++... ...+.+....+.++.+.....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4589999999999999999999874 33333456677765543 34455556655655443222334444444443322
Q ss_pred C-ceEEEEEeCCCCCC--ccCchhhhHhhhcCCCCcEEEE
Q 006588 132 G-KRFLLVLDDVWDGD--YIKWEPFYHCLKKGLHGSKILI 168 (639)
Q Consensus 132 ~-~~~LlvlDd~~~~~--~~~~~~l~~~l~~~~~~~~ilv 168 (639)
. +.=++++|-..... ......+...+....+...++|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 1 23478889775432 1123444444443333333444
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00038 Score=67.10 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=49.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhh--HHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDE--VKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
-.|+|.+|||||.|||+|++++++... ...+|..-.-+.+.. ..+..+++..+ ...+......+.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins--------hsLFSKWFsES--gKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS--------HSLFSKWFSES--GKLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh--------hHHHHHHHhhh--hhHHHHHHHHHHHHH
Confidence 358999999999999999999999743 345554433343332 13333343322 233455555666666
Q ss_pred CCce--EEEEEeCCC
Q 006588 131 AGKR--FLLVLDDVW 143 (639)
Q Consensus 131 ~~~~--~LlvlDd~~ 143 (639)
.++. +.+.+|+|+
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 6554 445588883
No 244
>PTZ00494 tuzin-like protein; Provisional
Probab=97.32 E-value=0.022 Score=57.98 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=105.1
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
..+..+..+|.|++|-..+++.|.... ...++++++.|.-|.|||+|.+.... +.--..++|++.. .++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvr-----kE~~paV~VDVRg---~ED 433 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVR-----VEGVALVHVDVGG---TED 433 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHH-----HcCCCeEEEEecC---Ccc
Confidence 445667789999999999999997654 56899999999999999999987755 2334577888875 356
Q ss_pred HHHHHHHHccCCCCCc--ccHHHHHHHHHH---hcCCceEEEEEe--CCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 101 IAKAMLEALTGSTSNL--DALQSLLISIDE---SIAGKRFLLVLD--DVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~--~~~~~~~~~l~~---~l~~~~~LlvlD--d~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.++.+.+.++.+..+. +..+...+...+ ...++.-+||+- +-.+. .-.|++......+ -.-|+|++----+
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~vaLacD-rRlCHvv~EVplE 511 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVVSLVSD-CQACHIVLAVPMK 511 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHHHHHcc-chhheeeeechHh
Confidence 7888999998765322 333443333332 234555555543 22111 0112222222112 2345565543222
Q ss_pred HHHh---hhcccceEECCCCCHHHHHHHHHHH
Q 006588 174 SIAS---MMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 174 ~~~~---~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
.+.. .+.....+.++.|+..+|.++.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 2111 1233558899999999999887553
No 245
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0035 Score=63.82 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=79.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
|--.++||||.|||+++.+++++.. |+ |+=+.+++...-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 5678999999999999999888422 11 22223332222222 2222222 3455
Q ss_pred EEEEEeCCCCC--------C----------ccCchhhhHhhhcCCC---CcE-EEEEccchHHHhh--h---cccceEEC
Q 006588 135 FLLVLDDVWDG--------D----------YIKWEPFYHCLKKGLH---GSK-ILITTRNESIASM--M---RSTDVISI 187 (639)
Q Consensus 135 ~LlvlDd~~~~--------~----------~~~~~~l~~~l~~~~~---~~~-ilvTsr~~~~~~~--~---~~~~~~~l 187 (639)
-+||++|++-. + ...+-.++.++-.... +-+ |+.||.-.+-... + ...-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 67888887432 0 0112224444432211 224 5666665442221 1 22347778
Q ss_pred CCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 188 KELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 188 ~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.-=+.+.-+.|+..+.+..... .++.+|.+...+.-+.=..++..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h-------~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDH-------RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCc-------chhHHHHHHhhcCccCHHHHHHHH
Confidence 8788888888998887533211 124555555555544444444433
No 246
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.31 E-value=0.00088 Score=66.80 Aligned_cols=96 Identities=23% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC--
Q 006588 37 NALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST-- 113 (639)
Q Consensus 37 ~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-- 113 (639)
..|..+|. .. =+..+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++...
T Consensus 41 ~~LD~~Lg~GG----lp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~ 109 (321)
T TIGR02012 41 LSLDLALGVGG----LPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDN 109 (321)
T ss_pred HHHHHHhcCCC----CcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHH
Confidence 45666665 22 236789999999999999999988773 34445678899887655543 344444321
Q ss_pred ---CCcccHHHHHHHHHHhcC-CceEEEEEeCCC
Q 006588 114 ---SNLDALQSLLISIDESIA-GKRFLLVLDDVW 143 (639)
Q Consensus 114 ---~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~ 143 (639)
......++....+....+ +..-++|+|.+.
T Consensus 110 l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 110 LLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred eEEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 112334555555554444 356799999884
No 247
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00031 Score=71.70 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=69.6
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..+.+|.+..+.+..+|. + -++|+.|.+.++.- ...+|.. + ..+|+.|.+++|.....+|. +|
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~n-----LtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNN-----LTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCC-----cccCCch-h--hhhhhheEccCccccccccc------cc
Confidence 557788888887777772 2 23688887765431 2233332 2 25788888888854555554 36
Q ss_pred cEEeccCCC---CcccchhhhcCCCccEEecCCCCCc--cccchhhhhc-ccCceeecCCCCccccccccCCCCcCCccc
Q 006588 469 RYLNLSGQK---IEKLPEALCELYNLEKLDICSCSCL--KELPEGIGKL-INMKYLLNRDTDSVRYMPVGIARLKSLRTL 542 (639)
Q Consensus 469 ~~L~l~~~~---l~~lp~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 542 (639)
+.|+++++. +..+|++ |+.|.+.+++.. ..+|. .+ ++|++|++++|... .+|+.+. .+|++|
T Consensus 115 e~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcccccCcch------Hhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 666676655 3455553 445555332211 11111 23 36788888777533 3444332 456666
Q ss_pred c
Q 006588 543 E 543 (639)
Q Consensus 543 ~ 543 (639)
.
T Consensus 183 ~ 183 (426)
T PRK15386 183 T 183 (426)
T ss_pred E
Confidence 5
No 248
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0028 Score=66.48 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=89.8
Q ss_pred CcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 28 EICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
++=|-++...+|..+...+-.+. -..+.=|.+|||+|+|||-||+++++ +.+.+| +.+..+
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----- 579 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----- 579 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH-----
Confidence 34445555566665554433211 12355689999999999999999999 566665 333332
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC-----ccC------chhhhHhhhcC--CCCcEEE
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD-----YIK------WEPFYHCLKKG--LHGSKIL 167 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----~~~------~~~l~~~l~~~--~~~~~il 167 (639)
+++.+.-+ .........+++.-...+|+|+||.++..- ... .++++.-+-.. -.|.-||
T Consensus 580 ---ELlNkYVG-----ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 580 ---ELLNKYVG-----ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred ---HHHHHHhh-----hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEE
Confidence 22322221 122333444555556789999999996421 111 22233333222 1344455
Q ss_pred EEccchHHHh-h-h---cccceEECCCCCHHHHHHHHHHHhhC
Q 006588 168 ITTRNESIAS-M-M---RSTDVISIKELAEEECWALFKQLAFF 205 (639)
Q Consensus 168 vTsr~~~~~~-~-~---~~~~~~~l~~l~~~ea~~l~~~~~~~ 205 (639)
-.|..+++-. . + .-...+-|+.-+.+|-.+++......
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc
Confidence 5555544322 1 1 22446777778899999999888754
No 249
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.30 E-value=0.00088 Score=66.83 Aligned_cols=97 Identities=24% Similarity=0.153 Sum_probs=62.0
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC-
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST- 113 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~- 113 (639)
...|..+|. .. =+..+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++...
T Consensus 40 i~~LD~~Lg~GG----lp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~ 108 (325)
T cd00983 40 SLSLDIALGIGG----YPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLD 108 (325)
T ss_pred CHHHHHHhcCCC----ccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHH
Confidence 345666665 22 236789999999999999999998873 44455678899987766543 334443221
Q ss_pred ----CCcccHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 006588 114 ----SNLDALQSLLISIDESIAG-KRFLLVLDDVW 143 (639)
Q Consensus 114 ----~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~ 143 (639)
....+.++....+....+. ..-++|+|.+.
T Consensus 109 ~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 109 NLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HheecCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 1122344555555554443 46699999874
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.30 E-value=0.0012 Score=59.79 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=30.5
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
++.|+|++|+|||+++..++.. ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3789999999999999999883 333446788888776543
No 251
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.29 E-value=0.00024 Score=71.33 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=43.3
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChh
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHD 78 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 78 (639)
+++|.++.++++.+++.....+.....++++|.|++|+||||||+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999987654323456899999999999999999998853
No 252
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.28 E-value=0.00046 Score=70.41 Aligned_cols=84 Identities=23% Similarity=0.418 Sum_probs=59.3
Q ss_pred HhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCC-CcccchhhhcCCCccEEecCCCCCccccchhhhhcccCc
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQK-IEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMK 516 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 516 (639)
+..+.+++.|++++|. ...+|. + ..+|+.|.+++|. ++.+|..+. ++|+.|++++|..+..+|.+ |+
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc
Confidence 5568999999999997 666663 2 3469999998854 677886553 58999999999657777764 55
Q ss_pred eeecCCCC--ccccccccC
Q 006588 517 YLLNRDTD--SVRYMPVGI 533 (639)
Q Consensus 517 ~L~l~~n~--~~~~~p~~~ 533 (639)
.|+++.+. .+..+|..+
T Consensus 116 ~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred eEEeCCCCCcccccCcchH
Confidence 56665543 244555543
No 253
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.26 E-value=0.0014 Score=63.46 Aligned_cols=128 Identities=24% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC-
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS- 114 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~- 114 (639)
+..|.++|...- +...++.|.|++|+|||++|.+++.. ...+-..++|++..+. ..++.+.+ ..++....
T Consensus 11 i~~LD~~l~gG~----~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~ 81 (234)
T PRK06067 11 NEELDRKLGGGI----PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISD 81 (234)
T ss_pred CHHHHHhhCCCC----cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhH
Confidence 344566665332 36789999999999999999999763 3334567899988654 34444443 22321110
Q ss_pred -------------------CcccHHHHHHHHHHhcCC-ceEEEEEeCCCC----CCccCchhhhHhhhc-CCCCcEEEEE
Q 006588 115 -------------------NLDALQSLLISIDESIAG-KRFLLVLDDVWD----GDYIKWEPFYHCLKK-GLHGSKILIT 169 (639)
Q Consensus 115 -------------------~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~----~~~~~~~~l~~~l~~-~~~~~~ilvT 169 (639)
.....+.....+...+.. ++-++|+|.+.. .+......+...+.. ...+..+++|
T Consensus 82 ~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt 161 (234)
T PRK06067 82 FFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILIT 161 (234)
T ss_pred HHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 012234555555555543 566899999752 211222233222322 2235567777
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
+..
T Consensus 162 ~~~ 164 (234)
T PRK06067 162 LHP 164 (234)
T ss_pred ecC
Confidence 653
No 254
>PRK09354 recA recombinase A; Provisional
Probab=97.26 E-value=0.0012 Score=66.35 Aligned_cols=97 Identities=24% Similarity=0.148 Sum_probs=63.6
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC-
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST- 113 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~- 113 (639)
...|..+|. .. =+..+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++...
T Consensus 45 i~~LD~~LG~GG----ip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld 113 (349)
T PRK09354 45 SLALDIALGIGG----LPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDID 113 (349)
T ss_pred cHHHHHHhcCCC----CcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHH
Confidence 445667776 32 236789999999999999999998873 44455778999988776652 344443321
Q ss_pred ----CCcccHHHHHHHHHHhcCC-ceEEEEEeCCC
Q 006588 114 ----SNLDALQSLLISIDESIAG-KRFLLVLDDVW 143 (639)
Q Consensus 114 ----~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~ 143 (639)
......++....+...++. ..-++|+|.+.
T Consensus 114 ~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 114 NLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1122345555555554443 46699999884
No 255
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.25 E-value=0.0014 Score=63.00 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC------CceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF------DKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
..|.++|...- +...++.|+|++|+|||+||..++.. ..... ..++|++....+....+ ..+.+...
T Consensus 6 ~~lD~~l~GG~----~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~ 78 (226)
T cd01393 6 KALDELLGGGI----PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFG 78 (226)
T ss_pred HHHHHHhCCCC----cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhc
Confidence 34555554332 25689999999999999999988763 22222 57899998776655443 33333322
Q ss_pred CCC---------CCcccHHHHHHHHHHhc----CCceEEEEEeCCC
Q 006588 111 GST---------SNLDALQSLLISIDESI----AGKRFLLVLDDVW 143 (639)
Q Consensus 111 ~~~---------~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~ 143 (639)
... ....+.++....+.... ..+.-++|+|.+.
T Consensus 79 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 79 LDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred cchhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 110 00122344444444332 2345588888874
No 256
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.01 Score=63.51 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=101.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
-.++-|..+..+.|.+.+..+..+. -+...-|.++|++|+|||.||.+++.. ...-|+++..+
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~-------~~~~fisvKGP--- 735 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN-------SNLRFISVKGP--- 735 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh-------CCeeEEEecCH---
Confidence 3456778888888888888766532 133456899999999999999888762 12335666543
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------C---chhhhHhhhc--CCCCcE
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI--------K---WEPFYHCLKK--GLHGSK 165 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~--------~---~~~l~~~l~~--~~~~~~ 165 (639)
+++.+.-+. ..+...+.+.+.-.-+||+|++|+++..... . .++++.-+.. .-.|.-
T Consensus 736 -----ElL~KyIGa-----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 736 -----ELLSKYIGA-----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred -----HHHHHHhcc-----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 344443322 2233333444444678999999999653211 1 2223332221 123554
Q ss_pred EEEE-ccchHHHhhh---cc-cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 166 ILIT-TRNESIASMM---RS-TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 166 ilvT-sr~~~~~~~~---~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
|+.. ||..-+...+ +. ...+.-+.-++.|-.+++....-.... ..+.+ .+.++..++|+.-|
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccc----hHHHhhhcCCCchh
Confidence 5544 4433222221 11 334444555778888888776532221 11222 46777788877644
No 257
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.18 E-value=0.00025 Score=64.38 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHH-hcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVK-RQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
+...+.+.||+|+|||.||+.+++. .. +.....+-++++......+.. .++..+..... ......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~~-~~~~~l~~~~~--~~v~~~--------- 67 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDVE-SSVSKLLGSPP--GYVGAE--------- 67 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHCS-CHCHHHHHHTT--CHHHHH---------
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchHH-hhhhhhhhccc--ceeecc---------
Confidence 4568999999999999999999883 44 445566667776544422111 11111111110 011100
Q ss_pred CceEEEEEeCCCCCCc-----------cCchhhhHhhh
Q 006588 132 GKRFLLVLDDVWDGDY-----------IKWEPFYHCLK 158 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~-----------~~~~~l~~~l~ 158 (639)
..-+|+||+++-... ..++.+++.+.
T Consensus 68 -~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 -EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp -HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred -chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 001999999988876 55666666664
No 258
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00017 Score=79.76 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=90.3
Q ss_pred CceEEEEEEeccc--Ccccccc-cCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 389 EKVRHLMLIIGKE--STFPIST-CRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 389 ~~~~~l~l~~~~~--~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
..++++.+.+... ...|..+ ..+|.|++|.+.+..+.... ...+...+++|..||+|++. +..+ ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-----F~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-----FSQLCASFPNLRSLDISGTN-ISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-----HHHHhhccCccceeecCCCC-ccCc-HHHhcc
Confidence 5677787776543 2223222 34888888877776653222 33346678888888888888 4444 557778
Q ss_pred CCCcEEeccCCCCcccc--hhhhcCCCccEEecCCCCCccccch-------hhhhcccCceeecCCCCccccccccC-CC
Q 006588 466 IHLRYLNLSGQKIEKLP--EALCELYNLEKLDICSCSCLKELPE-------GIGKLINMKYLLNRDTDSVRYMPVGI-AR 535 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~-------~~~~l~~L~~L~l~~n~~~~~~p~~~-~~ 535 (639)
++|+.|.+.+-.+..-. ..+-.|++|+.||+|...... .+. .-..||+|+.||.|++.+.+.+-+.+ ..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 88888888887776433 356678888888888765322 221 12347788888888776554433322 22
Q ss_pred CcCCcccc
Q 006588 536 LKSLRTLE 543 (639)
Q Consensus 536 l~~L~~L~ 543 (639)
-++|+.+.
T Consensus 274 H~~L~~i~ 281 (699)
T KOG3665|consen 274 HPNLQQIA 281 (699)
T ss_pred CccHhhhh
Confidence 34444443
No 259
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0013 Score=61.65 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
++.=|=.+++++|++..+.+.-+. -+.++-|.++|++|.|||-+|+++++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 346678899999998876544321 24667899999999999999999998
No 260
>PRK08118 topology modulation protein; Reviewed
Probab=97.15 E-value=0.00054 Score=62.15 Aligned_cols=34 Identities=32% Similarity=0.662 Sum_probs=25.3
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHH-hcCCceEE
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVK-RQFDKILW 89 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 89 (639)
.|.|.|++|+||||||+.+++..... -+++.++|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999998743222 33455555
No 261
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.0016 Score=61.55 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=110.3
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChh----hHHhcCCceEEEEeCCC--------
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHD----EVKRQFDKILWVCVSET-------- 95 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~wv~~~~~-------- 95 (639)
...++++.-+.|..... ........+|||+|.||-|.+..+.+.. -.+-+-+..-|.+-++.
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 47778888888887765 2246789999999999999998776631 01111222333322211
Q ss_pred --Cc-----------hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceE-EEEEeCCCCCCccCchhhhHhhhcCC
Q 006588 96 --FD-----------EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRF-LLVLDDVWDGDYIKWEPFYHCLKKGL 161 (639)
Q Consensus 96 --~~-----------~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~~~~~~~~l~~~l~~~~ 161 (639)
.. -+-+..+++++.....+ ++ .-..+++ ++|+-.++.........++.-+....
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 10 01223333333321110 00 0012233 66777776654445566777777788
Q ss_pred CCcEEEEEccc--hHHHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 162 HGSKILITTRN--ESIASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 162 ~~~~ilvTsr~--~~~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
..+++|+...+ +.+......--.+++...+++|....+.......+-.. ..+.+.+|+++++|+-.-
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l----p~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL----PKELLKRIAEKSNRNLRR 224 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC----cHHHHHHHHHHhcccHHH
Confidence 88988887654 33444434455789999999999999988875444322 145689999999998643
No 262
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.14 E-value=0.0013 Score=64.18 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH----hcCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK----RQFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
..|.+.|...- +...+.=|+|++|+|||+||..++-..... +.-..++|++....++...+. +|+++..
T Consensus 25 ~~lD~~L~GGi----~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 25 KSLDELLGGGI----PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp HHHHHHTTSSE----ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred HHHHHhhCCCC----CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 35666665433 256799999999999999998776532222 223469999998888877664 5666553
No 263
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.12 E-value=0.0043 Score=60.02 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
+..|.++|...- +...++.|.|++|+|||++|.+++.. ...+-..++|++... +..++.+.
T Consensus 7 i~~LD~~l~GG~----~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 7 IPGMDEILHGGI----PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cHhHHHHhcCCC----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 345566665443 36789999999999999999988763 224456788998765 34444443
No 264
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.10 E-value=0.001 Score=61.22 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC 91 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 91 (639)
...+|++.|++|+||||+|+.++. .....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 557999999999999999999988 4555566666664
No 265
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.01 Score=58.22 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=79.0
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH-----------HhcCCceEEEEeCCCCchHHHHH
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV-----------KRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-----------~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|...+.... -+....++|+.|+||+++|..+++..-- .+.++-+.|+.-...
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-------- 71 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-------- 71 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--------
Confidence 4567777776443 5688999999999999999888774210 001111112210000
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhc-----CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-HH-
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESI-----AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-IA- 176 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~- 176 (639)
...-.+++..+ +.+.+ .++.=++|+|+++.+.....+.+++.+.....++.+|++|.+.+ +.
T Consensus 72 ----------~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 72 ----------GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred ----------CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 00012333222 22222 24556889999999988888999999999888887777776643 32
Q ss_pred hhhcccceEECCCC
Q 006588 177 SMMRSTDVISIKEL 190 (639)
Q Consensus 177 ~~~~~~~~~~l~~l 190 (639)
+..+....+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 33344556666654
No 266
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0043 Score=67.27 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=88.6
Q ss_pred CcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 28 EICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
...|-+..-+.+.+.......+. -+..+.+.++|++|.|||.||++++. +....| +.+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH-----
Confidence 34555555555555443322211 24566899999999999999999988 334343 222211
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc-----------cCchhhhHhhhc--CCCCcEEE
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY-----------IKWEPFYHCLKK--GLHGSKIL 167 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------~~~~~l~~~l~~--~~~~~~il 167 (639)
.++.+..+ .........+....+..+++|++|+++..-. .-..+++..+.. ...+..+|
T Consensus 311 ---~l~sk~vG-----esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 311 ---ELLSKWVG-----ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred ---HHhccccc-----hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 22222221 1122223333334467899999999954210 012333433432 22344445
Q ss_pred EEccchHHHhh---h--cccceEECCCCCHHHHHHHHHHHhhCCC
Q 006588 168 ITTRNESIASM---M--RSTDVISIKELAEEECWALFKQLAFFGR 207 (639)
Q Consensus 168 vTsr~~~~~~~---~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~ 207 (639)
-+|..+..... . .-...+.+..-+.++..++|..+.....
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 55554432221 1 2255889999999999999999885333
No 267
>PHA02244 ATPase-like protein
Probab=97.07 E-value=0.0017 Score=65.29 Aligned_cols=57 Identities=9% Similarity=-0.061 Sum_probs=37.1
Q ss_pred CCcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 16 RRVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 16 ~~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+++......-+..|+|+..........+..... ...-|.|+|++|+|||+||+++++
T Consensus 85 ~~~~~~l~~~d~~~ig~sp~~~~~~~ri~r~l~----~~~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 85 GKPAGDISGIDTTKIASNPTFHYETADIAKIVN----ANIPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred cCCcCchhhCCCcccCCCHHHHHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHH
Confidence 344444555556678876666544443332221 233488999999999999999887
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.07 E-value=0.0024 Score=64.05 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=49.0
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH----hcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK----RQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
...|.++|...- +...++-|+|++|+|||+|+..++-..... +.-..++|++....++.+.+. ++++.++.
T Consensus 82 ~~~LD~lLgGGi----~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 82 SQALDGILGGGI----ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CHHHHHHhCCCC----cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 445666676433 366899999999999999998776432211 222579999998888777664 45666653
No 269
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0097 Score=61.51 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=84.2
Q ss_pred cCCCCcccch---hhHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRV---GERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~---~~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
..-.+.-|-| .|++++++.|..+..+. .+=++=|.+.|++|.|||-||++++-. . .|-|+.++.. .
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE--A-----~VPFF~~sGS-E 372 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE--A-----GVPFFYASGS-E 372 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc--c-----CCCeEecccc-c
Confidence 3344566766 46667777776554321 244567999999999999999999773 2 2334433221 1
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC-----------ccCchhhhHhhhcCC--CCc
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD-----------YIKWEPFYHCLKKGL--HGS 164 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~~~l~~~l~~~~--~~~ 164 (639)
+++. +- + .+..-+ .+.+...-+..||+|++|+++..- .+.+++++.-+..+. .|.
T Consensus 373 FdEm----~V--G---vGArRV---RdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi 440 (752)
T KOG0734|consen 373 FDEM----FV--G---VGARRV---RDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI 440 (752)
T ss_pred hhhh----hh--c---ccHHHH---HHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence 1111 10 1 011112 222222334579999999985421 112334444444443 354
Q ss_pred EEEEEccchHHHhh-h----cccceEECCCCCHHHHHHHHHHHh
Q 006588 165 KILITTRNESIASM-M----RSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 165 ~ilvTsr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
.||-.|.-++.... + .....+.|+.-+..=-.+++..+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 44444554543332 1 124466666666555556665554
No 270
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0028 Score=70.82 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=76.7
Q ss_pred CcccchhhHHHHHHHHhccCCcCCC--CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 28 EICGRVGERNALVSMLLCESSEQQK--GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
..+|.++.+..+.+++.....+..+ +.-+..+.|+.|+|||.||++++.. .-+..+..+-++.++. .. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh-h
Confidence 4789999999999998877654344 6789999999999999999999873 3333344444444432 11 2
Q ss_pred HHHccCCC--CCcccHHHHHHHHHHhcCCc-eEEEEEeCCCCCCccCchhhhHhhhc
Q 006588 106 LEALTGST--SNLDALQSLLISIDESIAGK-RFLLVLDDVWDGDYIKWEPFYHCLKK 159 (639)
Q Consensus 106 l~~l~~~~--~~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~~~l~~~l~~ 159 (639)
.+..+.+. .+....+++.+ .++.+ -.+|+||||+-++......+...+..
T Consensus 634 skligsp~gyvG~e~gg~Lte----avrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEEGGQLTE----AVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCCcccccchhHHHHHH----HHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 22223221 12233344433 44444 46888999998877666666666654
No 271
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.04 E-value=0.004 Score=55.94 Aligned_cols=119 Identities=18% Similarity=0.060 Sum_probs=67.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEE---EeCCCCchHHHHHHHHHHccCCC-------CCcc----c
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWV---CVSETFDEFRIAKAMLEALTGST-------SNLD----A 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv---~~~~~~~~~~~~~~il~~l~~~~-------~~~~----~ 118 (639)
..+.|-|++..|.||||.|...+.. ..++-..++.+ .-.........+..+.-.+.... .+.. .
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~r--a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALR--ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 3478999999999999999777663 33333344333 33222233344433210110000 0111 1
Q ss_pred HHHHHHHHHHhcCCce-EEEEEeCCCC---CCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 119 LQSLLISIDESIAGKR-FLLVLDDVWD---GDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~-~LlvlDd~~~---~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+..+...+.+.... =++|||++-. ....+.+.+...+.....+..+|+|.|..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1222223334444444 4999999843 23345677888888888888999999974
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.03 E-value=0.0026 Score=61.64 Aligned_cols=66 Identities=24% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh----cCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 38 ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR----QFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 38 ~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
.|.++|...- +...++.|+|++|+|||++|..++....... .-..++|++....++...+ .++++.
T Consensus 7 ~lD~~l~GGi----~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 7 ALDELLGGGI----ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred hhHhhccCCC----CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 3445554332 3568999999999999999998875321221 1368999998887665433 334433
No 273
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.02 E-value=0.0025 Score=68.24 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCcccccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE
Q 006588 16 RRVQSTSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC 91 (639)
Q Consensus 16 ~~~~~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 91 (639)
.|...-.|....+++--.+.++++++||...... ....++++|+||+|+||||.++.+++. . .|..+-|.+
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 3444445555666777788899999999864321 334679999999999999999988773 2 244555654
No 274
>PRK06696 uridine kinase; Validated
Probab=97.01 E-value=0.0012 Score=63.30 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=37.0
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.|++.+++|.+.+.... .+.+.+|+|.|.+|+||||+|+.+++.
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47888899999887543 447889999999999999999999873
No 275
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0036 Score=57.17 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=61.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC--CchHHHHHHHHHHccCCCCC------------ccc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET--FDEFRIAKAMLEALTGSTSN------------LDA 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~------------~~~ 118 (639)
...+++|.|+.|.|||||.+.++.- .....+.++++-... ...... ...+...... .+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 4578999999999999999988763 112233333321110 001111 1111100000 111
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhhcCCCCcEEEEEccchHHHh
Q 006588 119 LQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKGLHGSKILITTRNESIAS 177 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 177 (639)
-+...-.+...+-.++-++++|+-... |......+...+.....+..||++|.+.+...
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 112222244455567789999987542 32334455555554434567888888766544
No 276
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.0024 Score=59.45 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=56.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CCchHHHHHHHHHHccCCCC---Cc-ccHHHHHHHHHH
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TFDEFRIAKAMLEALTGSTS---NL-DALQSLLISIDE 128 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~---~~-~~~~~~~~~l~~ 128 (639)
++++.+.|+.|+||||.+.+++...... -..+..+++.. .....+.++..++.++.+.. .. .+.+...+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999999998854333 45677888764 44667888888888876531 11 233333334443
Q ss_pred hcCCceEEEEEeCCCC
Q 006588 129 SIAGKRFLLVLDDVWD 144 (639)
Q Consensus 129 ~l~~~~~LlvlDd~~~ 144 (639)
.-..+.=++++|-...
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3222334778886643
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.99 E-value=0.0041 Score=57.37 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=65.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC--CCchHH------HHHHHHHHccCCC------CCccc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE--TFDEFR------IAKAMLEALTGST------SNLDA 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~------~~~~il~~l~~~~------~~~~~ 118 (639)
...+++|.|+.|.|||||++.++.. .....+.++++-.+ ...... ...++++.++... ...+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4568999999999999999988773 12234444443211 111111 1222444443221 11122
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCC-CCccCchhhhHhhhcCC-C-CcEEEEEccchHHH
Q 006588 119 LQSLLISIDESIAGKRFLLVLDDVWD-GDYIKWEPFYHCLKKGL-H-GSKILITTRNESIA 176 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~~LlvlDd~~~-~~~~~~~~l~~~l~~~~-~-~~~ilvTsr~~~~~ 176 (639)
-+...-.+.+.+-..+-++++|+... .+......+...+.... . +..+|++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22333334455566778999998753 23333444555554332 2 56788888876543
No 278
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.018 Score=56.80 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC
Q 006588 33 VGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS 112 (639)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 112 (639)
...++.+..++.... -+....++| |+||+++|..++...-=.+..+. ..++.-..++.+...-+..
T Consensus 8 ~~~~~~L~~~~~~~r-----l~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~-------~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 8 PKVFQRFQTILEQDR-----LNHAYLFSG--DFASFEMALFLAQSLFCEQKEGV-------LPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHcCC-----cceeeeeeC--CccHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCC
Confidence 345667777776443 467888888 48999999887663100000000 0011111222222111100
Q ss_pred ------CCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-Hhhhc
Q 006588 113 ------TSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASMMR 180 (639)
Q Consensus 113 ------~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~~~ 180 (639)
....-.+++..+..... ..+++-++|+|+++.+.....+.+++.+.....++.+|++|.+.+ + .+..+
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH
Confidence 00111233333322222 234566999999999988888999999999888887777776543 3 33345
Q ss_pred ccceEECCCCCHHHHHHHHHH
Q 006588 181 STDVISIKELAEEECWALFKQ 201 (639)
Q Consensus 181 ~~~~~~l~~l~~~ea~~l~~~ 201 (639)
....+.+.. +.++..+.+..
T Consensus 154 Rcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 154 RTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cceeeeCCC-cHHHHHHHHHH
Confidence 566788876 66666666654
No 279
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.97 E-value=0.0047 Score=60.92 Aligned_cols=137 Identities=24% Similarity=0.283 Sum_probs=79.8
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChh-hHHhcCCceEEE----EeCCCC-----ch
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHD-EVKRQFDKILWV----CVSETF-----DE 98 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~wv----~~~~~~-----~~ 98 (639)
+-+|..+..--.++|. ++....|.+.|.+|+|||.||.+++-.. ..++.|..++=. .+++.. +.
T Consensus 226 i~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 4566666666667776 5678999999999999999997776543 235555444311 112111 12
Q ss_pred HH----HHHHHHHHccCCCCCcccHHHHHHHHH----------HhcCC---ceEEEEEeCCCCCCccCchhhhHhhhcCC
Q 006588 99 FR----IAKAMLEALTGSTSNLDALQSLLISID----------ESIAG---KRFLLVLDDVWDGDYIKWEPFYHCLKKGL 161 (639)
Q Consensus 99 ~~----~~~~il~~l~~~~~~~~~~~~~~~~l~----------~~l~~---~~~LlvlDd~~~~~~~~~~~l~~~l~~~~ 161 (639)
++ ....|.+.+..-.......+...+.+. .+.++ ++-++|+|+.++. ...++...+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---TpheikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---TPHELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---CHHHHHHHHHhcc
Confidence 22 233333333211111111122223221 12334 3569999999775 5556667777889
Q ss_pred CCcEEEEEccchH
Q 006588 162 HGSKILITTRNES 174 (639)
Q Consensus 162 ~~~~ilvTsr~~~ 174 (639)
.|+||+.|.-..+
T Consensus 377 ~GsKIVl~gd~aQ 389 (436)
T COG1875 377 EGSKIVLTGDPAQ 389 (436)
T ss_pred CCCEEEEcCCHHH
Confidence 9999999986543
No 280
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.0085 Score=60.48 Aligned_cols=91 Identities=16% Similarity=0.082 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC-CchHHHHHHHHHHccCCCCC----cccHHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET-FDEFRIAKAMLEALTGSTSN----LDALQSLLISID 127 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~l~ 127 (639)
++.++++.|++|+||||++..++.. ...+-..++.++.... ....+.+...+..++..... ..+.....+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 4689999999999999999888874 3322224555654432 23445667777777654311 111222223333
Q ss_pred HhcCCceEEEEEeCCCCC
Q 006588 128 ESIAGKRFLLVLDDVWDG 145 (639)
Q Consensus 128 ~~l~~~~~LlvlDd~~~~ 145 (639)
.......=++++|.....
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 221222238999988654
No 281
>PHA00729 NTP-binding motif containing protein
Probab=96.97 E-value=0.0026 Score=59.72 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+...++|+|.+|+||||||..+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998873
No 282
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.96 E-value=0.001 Score=60.29 Aligned_cols=148 Identities=14% Similarity=0.240 Sum_probs=76.2
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCc-cc---HHHHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNL-DA---LQSLLISIDESIA 131 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~---~~~~~~~l~~~l~ 131 (639)
++.|.|.+|+|||++|..++.. ....++|+.-....+.+ ....|.. .....+.. .. ...+.+.+.+. +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~-H~~~R~~~w~t~E~~~~l~~~l~~~-~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIAR-HRKRRPAHWRTIETPRDLVSALKEL-D 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHH-HHHhCCCCceEeecHHHHHHHHHhc-C
Confidence 3689999999999999988652 22467777555554332 3333222 11111111 11 12222323221 2
Q ss_pred CceEEEEEeCCCC-------CCc----c----CchhhhHhhhcCCCCcEEEEEccchHHHhhhcccceEECCCCCHHHHH
Q 006588 132 GKRFLLVLDDVWD-------GDY----I----KWEPFYHCLKKGLHGSKILITTRNESIASMMRSTDVISIKELAEEECW 196 (639)
Q Consensus 132 ~~~~LlvlDd~~~-------~~~----~----~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~~~~~~l~~l~~~ea~ 196 (639)
+.-++++|.+.. ... . .+..+...+.. .+..+|++|.+ +-......++..
T Consensus 73 -~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~viVsnE------------vG~g~vp~~~~~ 137 (169)
T cd00544 73 -PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN--KPGTLILVSNE------------VGLGVVPENALG 137 (169)
T ss_pred -CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc--CCCcEEEEECC------------cCCCCCCCCHHH
Confidence 233789998621 100 0 11113333332 35556777642 334445566667
Q ss_pred HHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 197 ALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
+.|....+ .-...+...+++++.-..|.|+
T Consensus 138 r~f~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 138 RRFRDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 77777665 3334444456666666677775
No 283
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.95 E-value=0.0027 Score=69.45 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=78.6
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
......++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+.+. ....-...+.++|..... +.+
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~--s~r~~~pfv~i~c~~~~~--~~~ 263 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL--SPRAKRPFVKVNCAALSE--TLL 263 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeecCCCCH--HHH
Confidence 34566899999999999998876653 4567899999999999999888763 111223455566654322 222
Q ss_pred HHHHHHccCCCCCc-cc-HHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEE
Q 006588 103 KAMLEALTGSTSNL-DA-LQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILIT 169 (639)
Q Consensus 103 ~~il~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvT 169 (639)
. ..+.+...+. .. .......+. ....=.|+||+++.........+...+.... ...++|.|
T Consensus 264 ~---~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~ 337 (534)
T TIGR01817 264 E---SELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAA 337 (534)
T ss_pred H---HHHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEe
Confidence 1 2222211100 00 000000010 1223458899998876555666776665421 13578887
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
|..
T Consensus 338 s~~ 340 (534)
T TIGR01817 338 TNR 340 (534)
T ss_pred CCC
Confidence 754
No 284
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.93 E-value=0.0027 Score=59.03 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=29.0
Q ss_pred EEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 57 ISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
+.|.|++|+|||+||.+++.. ...+-..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCC
Confidence 789999999999999998874 3333467889987653
No 285
>PRK04328 hypothetical protein; Provisional
Probab=96.91 E-value=0.0053 Score=59.80 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
..|.++|...- +...++.|.|++|+|||+||.+++.. ...+-..++|++....
T Consensus 10 ~~LD~lL~GGi----p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 10 PGMDEILYGGI----PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred hhHHHHhcCCC----cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 34556665432 25689999999999999999998773 3344567889988764
No 286
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.91 E-value=0.0014 Score=66.43 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=71.8
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
+||+...++++.+.+..... ...-|.|+|++|+||+++|+.+.+. ....-...+-|+|.... .+.+.. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~--s~r~~~pfv~vnc~~~~--~~~l~~---~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL--SKRWQGPLVKLNCAALS--ENLLDS---E 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh--cCccCCCeEEEeCCCCC--hHHHHH---H
Confidence 47888888888887776654 4566999999999999999877652 11122234455665432 122211 1
Q ss_pred ccCCCCCc-cc-HHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 109 LTGSTSNL-DA-LQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 109 l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
+++...+. .. .......+. ....=.|+||+++.........+...+.... ...+||.||..
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 22111000 00 000001111 1123458999998876555566666665421 24577777753
No 287
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.90 E-value=0.0061 Score=67.78 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=84.4
Q ss_pred CCcccchhhHHHHHHHHhccCCc------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 27 EEICGRVGERNALVSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
.++.|-+...+++.+.+...... ..+-.+-+.|+|++|+|||++|+.++.. .... .+.++..+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~---f~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC---EEEEehHH------
Confidence 34678777777666655422110 0112345999999999999999988662 2222 22222221
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------cCc----hhhhHhhhcC--CCCc
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY----------IKW----EPFYHCLKKG--LHGS 164 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------~~~----~~l~~~l~~~--~~~~ 164 (639)
+. ..+.. .........+.......+++|++|+++..-. ... ..++..+... ..+.
T Consensus 221 ~~----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 11111 0111222223333345789999999865311 011 1222222222 2345
Q ss_pred EEEEEccchHHHhh-h----cccceEECCCCCHHHHHHHHHHHhhC
Q 006588 165 KILITTRNESIASM-M----RSTDVISIKELAEEECWALFKQLAFF 205 (639)
Q Consensus 165 ~ilvTsr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~ 205 (639)
.+|.||...+.... . ...+.+.+..-+.++..+++..+...
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 56667776543221 1 22467889888998888898887654
No 288
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.90 E-value=0.034 Score=55.86 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=33.0
Q ss_pred eEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 184 VISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 184 ~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.++|++++.+|+..++..+....-... ....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764222211 1122333567777779999644
No 289
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.89 E-value=0.0019 Score=65.60 Aligned_cols=134 Identities=12% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
..++|+...+.++.+.+..... ...-|.|+|++|+||+++|+.+... ....-...+.++|.... ...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 4689999999999998877654 4567999999999999999877541 11112344556666532 222222221
Q ss_pred HHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 107 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
..-.....+.. ......+. ....=.|+||+++.........+...+.... ...+||.||..
T Consensus 79 g~~~~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 10000000000 00011111 1122247899998876555566666664321 13678887754
No 290
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.89 E-value=0.011 Score=70.59 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.++-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999885
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.88 E-value=0.00093 Score=62.43 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=53.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc--
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI-- 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-- 130 (639)
+.++++|.|++|+|||++++.+.... ... ...+.+...+.....+ +.+..+.. ...+..........-
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~--~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEAL--EAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHH--HHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHH--HhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccc
Confidence 34789999999999999998887632 322 2333344443333333 33333211 122222111110000
Q ss_pred ----CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 131 ----AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 131 ----~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+.-+||+|++.-.+...+..+...... .++++|+.--..
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999976544444445544444 477887776543
No 292
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.88 E-value=0.0098 Score=62.43 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=53.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc-hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD-EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
.+++.+.|++|+||||++..++........-..+..+++..... ..+.+....+.++.+.....+.++....+... .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46899999999999999988877432122334677787765432 23444555555554432223334444445432 2
Q ss_pred ceEEEEEeCCCC
Q 006588 133 KRFLLVLDDVWD 144 (639)
Q Consensus 133 ~~~LlvlDd~~~ 144 (639)
..=++++|....
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 346888997643
No 293
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00015 Score=68.90 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=36.4
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEE
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLK 604 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 604 (639)
...++.-+..-...+..++.|+.|++.+|.+...+.. .+.....+..+++++.|+=+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~-~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG-GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccC-CcceEEEEeeccceEEecCc
Confidence 4445533333445677888899999988887666555 33333446677788877644
No 294
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.86 E-value=0.003 Score=64.49 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=70.7
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
...++|+++.+..+...+... +.+.+.|++|+|||+||+.++.. .. ....++.+.......++....
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCch
Confidence 334999999999998888744 45999999999999999999873 33 345667777766666654433
Q ss_pred HHHccCCCCCcccHHHHHHHHHHhcCC-----ceEEEEEeCCCCCCccCchhhhHhhhc
Q 006588 106 LEALTGSTSNLDALQSLLISIDESIAG-----KRFLLVLDDVWDGDYIKWEPFYHCLKK 159 (639)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~l~~~l~~-----~~~LlvlDd~~~~~~~~~~~l~~~l~~ 159 (639)
.-.-.... .....+..+ -+.++++|+++.........+...+..
T Consensus 90 ~~~~~~~~----------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 90 AYAALLLE----------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hHhhhhcc----------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 33321100 000001111 115999999988765555555555544
No 295
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.001 Score=59.99 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=14.7
Q ss_pred cCCCcEEeccCCCCcccchhhh-cCCCccEEecCCCC
Q 006588 465 LIHLRYLNLSGQKIEKLPEALC-ELYNLEKLDICSCS 500 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~ 500 (639)
++.|.+|.+++|.|+.+.+.+. .+++|..|.|.+|+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3444444444444443333332 23334444444443
No 296
>PRK07261 topology modulation protein; Provisional
Probab=96.85 E-value=0.0019 Score=58.93 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998866
No 297
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.85 E-value=0.0036 Score=57.62 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC---------------CCCcc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS---------------TSNLD 117 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~~~ 117 (639)
...+++|.|+.|+|||||++.++... ....+.++++-.. .......+-..+... ....+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~---~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGVP---VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCEE---HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 45689999999999999999887631 1112333332110 100000111111100 00111
Q ss_pred cHHHHHHHHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhhcCCCCcEEEEEccchHHHh
Q 006588 118 ALQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKGLHGSKILITTRNESIAS 177 (639)
Q Consensus 118 ~~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 177 (639)
.-+...-.+.+.+-.++=++++|+.... +......+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1222223344455567788899987543 22333444455544334667888888876554
No 298
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.84 E-value=0.00045 Score=64.92 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=88.6
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCc----cc-------ccccccCCCcEEeccCC
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSE----IP-------RNIKKLIHLRYLNLSGQ 476 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p-------~~~~~l~~L~~L~l~~~ 476 (639)
+..+..+..+.+++|.+..-. .......+.+-++|+..++++-. ++. ++ ..+-+|++|+..+||.|
T Consensus 26 l~~~d~~~evdLSGNtigtEA--~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEA--MEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHhhcceeEEeccCCcccHHH--HHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 344666666666666543221 11122234555666666666544 221 11 23455666777777776
Q ss_pred CCc-ccch----hhhcCCCccEEecCCCCCccccchh--------------hhhcccCceeecCCCCcccccccc-----
Q 006588 477 KIE-KLPE----ALCELYNLEKLDICSCSCLKELPEG--------------IGKLINMKYLLNRDTDSVRYMPVG----- 532 (639)
Q Consensus 477 ~l~-~lp~----~i~~l~~L~~L~l~~~~~~~~lp~~--------------~~~l~~L~~L~l~~n~~~~~~p~~----- 532 (639)
.+. ..|+ -|+.-..|..|.+++|. .+.+.-. ...-|.|+++....|++ ...|..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~ 180 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAAL 180 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHH
Confidence 665 3333 34556666677666665 3322211 11234566666555542 222221
Q ss_pred CCCCcCCccccceEecCCCccCCCccC--------CcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEE
Q 006588 533 IARLKSLRTLEEVRVSGRGCLDGRKAC--------RLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLK 604 (639)
Q Consensus 533 ~~~l~~L~~L~~~~~~~~~~~~~~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 604 (639)
+..-.+|+++.+.... .-|. .+..+.+|+.|++..|.++.. ....+...++.-+.|+.|.+.
T Consensus 181 l~sh~~lk~vki~qNg-------Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~---gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 181 LESHENLKEVKIQQNG-------IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE---GSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred HHhhcCceeEEeeecC-------cCcchhHHHHHHHHHHhCcceeeeccccchhhh---hHHHHHHHhcccchhhhcccc
Confidence 1111234444422221 1132 234556677777766665321 112222233344557777777
Q ss_pred eccCC
Q 006588 605 FDEKE 609 (639)
Q Consensus 605 ~~~~~ 609 (639)
.|-.+
T Consensus 251 DClls 255 (388)
T COG5238 251 DCLLS 255 (388)
T ss_pred chhhc
Confidence 66544
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.83 E-value=0.0083 Score=59.52 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..++++|.|++|+||||++..++........-..+..++..... ...+.+......++.......+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 56799999999999999999988743222111356777776532 233444445555544332223334444444433 3
Q ss_pred CceEEEEEeCC
Q 006588 132 GKRFLLVLDDV 142 (639)
Q Consensus 132 ~~~~LlvlDd~ 142 (639)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 300
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0074 Score=61.04 Aligned_cols=91 Identities=15% Similarity=0.090 Sum_probs=59.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
.+.+++++.|+.|+||||++..++.. ...+-..+.++++.... ...+.+....+.++.+.....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35789999999999999999998874 33333467788886543 3456677777777654322234444555444332
Q ss_pred C-CceEEEEEeCCCC
Q 006588 131 A-GKRFLLVLDDVWD 144 (639)
Q Consensus 131 ~-~~~~LlvlDd~~~ 144 (639)
. +..=++++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3346888898754
No 301
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.004 Score=63.52 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=55.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..+++++.|++|+||||++.+++...........+..++... .....+.+..+.+.++.......+..+....+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 457999999999999999999988432221123567776654 3456677777777776654322222233333333 34
Q ss_pred CceEEEEEeCCCC
Q 006588 132 GKRFLLVLDDVWD 144 (639)
Q Consensus 132 ~~~~LlvlDd~~~ 144 (639)
++ =++++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4556998854
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.81 E-value=0.0061 Score=61.32 Aligned_cols=70 Identities=23% Similarity=0.136 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh----cCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR----QFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
...|.++|...- +...++.|+|++|+|||+|+..++....... .-..++|++....+.... +.++++.+.
T Consensus 82 ~~~lD~ll~gGi----~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 82 SKELDKLLGGGI----ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CHHHHHHhcCCC----CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 345666665443 3678999999999999999988865322211 123679999888777665 444555554
No 303
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.016 Score=54.05 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=87.2
Q ss_pred ccc-chhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 29 ICG-RVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 29 ~vg-R~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
.|| -++.++++.+.+.-+..+. -.+++-|.++|++|.|||-||++++++ ....|+.++..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH-----
Confidence 454 4677788777665443321 245678999999999999999999884 23445555543
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------CchhhhHhh---hcC--CCCc
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-----------KWEPFYHCL---KKG--LHGS 164 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~l---~~~--~~~~ 164 (639)
++.++.-+.. ..-+.++.-..+ ...+-+|+.|+++..-.. .....+..+ ..+ ..+.
T Consensus 216 ---elvqk~igeg--srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 216 ---ELVQKYIGEG--SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred ---HHHHHHhhhh--HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 2333332211 122233322222 345788999988542111 111222222 222 3567
Q ss_pred EEEEEccchHHHhhh-----cccceEECCCCCHHHHHHHHHHHh
Q 006588 165 KILITTRNESIASMM-----RSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 165 ~ilvTsr~~~~~~~~-----~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
+||+.|..-++.... ...+.|+..+-+.+...+++.-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 888888765543321 225567777777777666765544
No 304
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.80 E-value=0.0025 Score=65.13 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..++=+.|||+.|.|||.|+..+++....+. .......++..++-+.+........++...++ .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~----------k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~----~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKR----------KRRVHFHEFMLDVHSRLHQLRGQDDPLPQVAD----ELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccc----------cccccccHHHHHHHHHHHHHhCCCccHHHHHH----HHH
Confidence 4678899999999999999999988532211 12234456666666666544333344444433 345
Q ss_pred CceEEEEEeCCCCCCccCchhhhHhhhc-CCCCcEEEEEcc
Q 006588 132 GKRFLLVLDDVWDGDYIKWEPFYHCLKK-GLHGSKILITTR 171 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~~~~~~l~~~l~~-~~~~~~ilvTsr 171 (639)
++..||.||++.-.+..+-.-+...+.. +..|..+|.||.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 5667999999866554443223333332 245775555554
No 305
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.80 E-value=0.0079 Score=57.92 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
..|.++|...- +....+.|.|++|+|||++|..++.. ...+-..++|++....
T Consensus 7 ~~LD~~l~GGi----~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 7 EGLDKLLEGGI----PRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred hhHHHhhcCCC----cCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 45556664332 25689999999999999999988763 2233457889987544
No 306
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0085 Score=61.69 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=58.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHH--hcCCceEEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVK--RQFDKILWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDES 129 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 129 (639)
.+++|++.|+.|+||||.+..++...... .+-..|..+++.... ...+.+..+++.++.+.......++....+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46899999999999999999888753322 122456667666532 333446666776766543333445555544443
Q ss_pred cCCceEEEEEeCCCCC
Q 006588 130 IAGKRFLLVLDDVWDG 145 (639)
Q Consensus 130 l~~~~~LlvlDd~~~~ 145 (639)
...-++++|.+...
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568999988654
No 307
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.78 E-value=0.011 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.|++|.||||+.+.++.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 557899999999999999998877
No 308
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.78 E-value=0.008 Score=57.67 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=33.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
...++.|.|++|+||||+|.+++.. ...+-..++|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~--~~~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG--FLQNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEeCCC--CHHHHHHHH
Confidence 4569999999999999999777663 222235677777544 445555555
No 309
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.77 E-value=0.0031 Score=71.11 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=77.8
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
...++|+...+.++.+.+..... ...-|.|+|++|+|||++|+.+.+. ....-...+.++|.... ...+..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~--s~r~~~~~v~i~c~~~~--~~~~~~- 445 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNL--SGRNNRRMVKMNCAAMP--AGLLES- 445 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHh--cCCCCCCeEEEecccCC--hhHhhh-
Confidence 34699999999998877775543 4567999999999999999988663 22222355666766432 122111
Q ss_pred HHHccCCCCCc--ccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 106 LEALTGSTSNL--DALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 106 l~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
.+.+...+. .........+. ....=.|+||+++.........+...+.... ...+||.||..
T Consensus 446 --~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 446 --DLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred --hhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 122111100 00011112221 1123468999998876555566766664421 34578888764
No 310
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.75 E-value=0.004 Score=55.02 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
...+++|.|+.|.|||||++.++... ....+.+|++-.. .+.... +.+.-+...-.+...+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999887732 1223444442110 000000 012222222334444556
Q ss_pred ceEEEEEeCCCC-CCccCchhhhHhhhcCCCCcEEEEEccchHHH
Q 006588 133 KRFLLVLDDVWD-GDYIKWEPFYHCLKKGLHGSKILITTRNESIA 176 (639)
Q Consensus 133 ~~~LlvlDd~~~-~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~ 176 (639)
++-++++|+... .+......+...+... +..|+++|.+.+..
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 777889998753 2333444555555544 24688888775543
No 311
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.74 E-value=0.0062 Score=62.61 Aligned_cols=97 Identities=28% Similarity=0.247 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN 115 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 115 (639)
+..|.++|...-. ...++.|.|++|+|||||+..++.. ....-..++|++..... .+ ...-++.++....+
T Consensus 68 i~eLD~vLgGGi~----~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~--~q-i~~Ra~rlg~~~~~ 138 (372)
T cd01121 68 IEELDRVLGGGLV----PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESP--EQ-IKLRADRLGISTEN 138 (372)
T ss_pred CHHHHHhhcCCcc----CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCH--HH-HHHHHHHcCCCccc
Confidence 5567777754332 4679999999999999999999874 33333578888876432 22 22234455433221
Q ss_pred -----cccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 006588 116 -----LDALQSLLISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 116 -----~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 144 (639)
..+.+++.+.+. ..++-++|+|.+..
T Consensus 139 l~l~~e~~le~I~~~i~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 139 LYLLAETNLEDILASIE---ELKPDLVIIDSIQT 169 (372)
T ss_pred EEEEccCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence 133444444443 23566889998743
No 312
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.74 E-value=0.001 Score=56.79 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+|+|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998877
No 313
>PRK05973 replicative DNA helicase; Provisional
Probab=96.72 E-value=0.0043 Score=59.20 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=32.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
...++.|.|.+|+|||++|.+++.. ...+-..++|++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC
Confidence 4568999999999999999998874 3233456888887754
No 314
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0058 Score=61.43 Aligned_cols=99 Identities=24% Similarity=0.239 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST 113 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 113 (639)
.-..++.+.|...-- ...++.|-|.||||||||..+++.+ ...+. .++||+-.+... ..+--+++|+...
T Consensus 77 tg~~EldRVLGGG~V----~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~---QiklRA~RL~~~~ 146 (456)
T COG1066 77 TGIEELDRVLGGGLV----PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQ---QIKLRADRLGLPT 146 (456)
T ss_pred CChHHHHhhhcCCcc----cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHH---HHHHHHHHhCCCc
Confidence 345677777876543 5579999999999999999999884 44344 788987765433 3334455665443
Q ss_pred CC-----cccHHHHHHHHHHhcCCceEEEEEeCCCCC
Q 006588 114 SN-----LDALQSLLISIDESIAGKRFLLVLDDVWDG 145 (639)
Q Consensus 114 ~~-----~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 145 (639)
.+ +.+.+...+.+. ..++-++|+|-++..
T Consensus 147 ~~l~l~aEt~~e~I~~~l~---~~~p~lvVIDSIQT~ 180 (456)
T COG1066 147 NNLYLLAETNLEDIIAELE---QEKPDLVVIDSIQTL 180 (456)
T ss_pred cceEEehhcCHHHHHHHHH---hcCCCEEEEecccee
Confidence 22 244555555444 367889999998654
No 315
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.70 E-value=0.001 Score=70.35 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
-.+++|.++.++++.+.|...........+++++.||+|+|||+||+.+++-
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 3468999999999999993332222446689999999999999999999873
No 316
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.69 E-value=0.0026 Score=68.91 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=80.4
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
....++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+.+. ....-...+.|+|..... +.+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~~~--~~~-- 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA--SPRADKPLVYLNCAALPE--SLA-- 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh--CCcCCCCeEEEEcccCCh--HHH--
Confidence 466799999999999999887654 5678999999999999999888763 222223556677765432 111
Q ss_pred HHHHccCCCCCc-c-cHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEcc
Q 006588 105 MLEALTGSTSNL-D-ALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTR 171 (639)
Q Consensus 105 il~~l~~~~~~~-~-~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr 171 (639)
-..+++...+. . ........+.. .+.. .|+||+++.........+...+.... ...+||.||.
T Consensus 255 -e~~lfG~~~g~~~ga~~~~~g~~~~--a~gG-tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 255 -ESELFGHVKGAFTGAISNRSGKFEL--ADGG-TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred -HHHhcCccccccCCCcccCCcchhh--cCCC-EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 11222211100 0 00000111111 2223 36899998876555666777665422 2457888876
Q ss_pred c
Q 006588 172 N 172 (639)
Q Consensus 172 ~ 172 (639)
.
T Consensus 331 ~ 331 (509)
T PRK05022 331 R 331 (509)
T ss_pred C
Confidence 4
No 317
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.68 E-value=0.0039 Score=56.43 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=62.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC--chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF--DEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
...+++|.|+.|.|||||.+.++.. .....+.++++-.... +..+... ...+... +.+.-+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHH
Confidence 4568999999999999999988763 1223445554322111 1111111 1111110 1222223333344455
Q ss_pred CCceEEEEEeCCCCC-CccCchhhhHhhhcC-CCCcEEEEEccchHH
Q 006588 131 AGKRFLLVLDDVWDG-DYIKWEPFYHCLKKG-LHGSKILITTRNESI 175 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~ 175 (639)
-.++-++++|+.... |......+...+... ..+..||++|.+...
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 567788889987542 323344455555433 236678888887653
No 318
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.68 E-value=0.0015 Score=61.59 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=116.8
Q ss_pred CceEEEEEEecccCc-----ccccccCCCCccEEEeeccccCCCCchhhhHH------HHHhhCCceeEEecCCCCCCCc
Q 006588 389 EKVRHLMLIIGKEST-----FPISTCRTKRIRSLLIECRRFDHSSLNGEILE------ELFRELTSLRALDFPSLYLPSE 457 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~------~~~~~l~~L~~L~l~~n~~~~~ 457 (639)
..+..+.+++|.+.. +...+.+-.+|+...++.--.+ ....+++. ..+-+|+.|+..+||+|-+...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftg--r~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTG--RDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhc--ccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 455666677776632 2333444556665544432211 01122222 2356788899999999887666
Q ss_pred cccc----ccccCCCcEEeccCCCCcccch--------------hhhcCCCccEEecCCCCCccccchh-----hhhccc
Q 006588 458 IPRN----IKKLIHLRYLNLSGQKIEKLPE--------------ALCELYNLEKLDICSCSCLKELPEG-----IGKLIN 514 (639)
Q Consensus 458 ~p~~----~~~l~~L~~L~l~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~lp~~-----~~~l~~ 514 (639)
.|+. ++....|+.|.+++|.+.-+.. -...-|.|++.+...|+ ....|.. +....+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 5543 4556778888898888663321 13356788888888877 4333332 333357
Q ss_pred CceeecCCCCcccccccc--------CCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhh
Q 006588 515 MKYLLNRDTDSVRYMPVG--------IARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGE 586 (639)
Q Consensus 515 L~~L~l~~n~~~~~~p~~--------~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 586 (639)
|+.+.+..|.+ -|.+ +..+.+|+.|++.+......-+..+...++.++.|+.|++..|..... . ..
T Consensus 187 lk~vki~qNgI---rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~-G--~~ 260 (388)
T COG5238 187 LKEVKIQQNGI---RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE-G--VK 260 (388)
T ss_pred ceeEEeeecCc---CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc-c--HH
Confidence 88888888743 3442 245567777764333222212222344567778888888877653211 0 01
Q ss_pred hccccc--ccccCcceEEEEecc
Q 006588 587 AKRLEL--DKKKYLFSLTLKFDE 607 (639)
Q Consensus 587 ~~~~~l--~~~~~L~~L~l~~~~ 607 (639)
.....+ ...++|..|...+|.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHHhhhhcCCCccccccchhh
Confidence 111111 124677777777775
No 319
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.67 E-value=0.0084 Score=60.76 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH---H-hcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV---K-RQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
...|.++|...- +...++-|+|++|+|||+||..++..... . +.-..++|++....+..+.+ .++++.++.
T Consensus 109 ~~~LD~lL~GG~----~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 109 SRELDKILEGGI----ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CHHHHHhhcCCC----cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 345666665432 25789999999999999999877643221 1 12236999999998877665 455666543
No 320
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00068 Score=63.78 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=58.6
Q ss_pred ccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCC--CCccccchhhhhcccCceeecCCCCccccccccC--
Q 006588 458 IPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSC--SCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGI-- 533 (639)
Q Consensus 458 ~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~-- 533 (639)
+....-.+..|+.|++.++.++.+. .+..|++|+.|+++-| ...+.++....++++|+++++++|.+. .++.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccch
Confidence 3333334455666666666655332 3446777777777777 555556655566677777777777532 13333
Q ss_pred -CCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceee
Q 006588 534 -ARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGI 575 (639)
Q Consensus 534 -~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 575 (639)
..+.+|..|+++++...+ ....--..|.-+++|.+|+-...
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 233344445443333322 11111112344555555555433
No 321
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.67 E-value=0.0017 Score=58.65 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=40.3
Q ss_pred HhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch--hhhcCCCccEEecCCCCCccccch----hhhh
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE--ALCELYNLEKLDICSCSCLKELPE----GIGK 511 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~----~~~~ 511 (639)
|..++.|.+|.+++|.++..-|.--.-+++|+.|.|.+|.|..+.+ -+..++.|++|.+-+|.... .+. .+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-ccCceeEEEEe
Confidence 3445555555555555433333322224455555555555554432 23445555555555555221 111 1455
Q ss_pred cccCceeecCC
Q 006588 512 LINMKYLLNRD 522 (639)
Q Consensus 512 l~~L~~L~l~~ 522 (639)
+++|++||...
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 56666666544
No 322
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.66 E-value=0.0085 Score=54.71 Aligned_cols=118 Identities=17% Similarity=0.061 Sum_probs=67.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC---CchHHHHHHHHHHc-----cCC----C-CCccc-
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET---FDEFRIAKAMLEAL-----TGS----T-SNLDA- 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l-----~~~----~-~~~~~- 118 (639)
..+.|.|+|..|-||||.|...+. +..++--.|..+-.-+. ......+..+- .+ +.. . ....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHH
Confidence 457899999999999999977766 33333334444444322 23333333310 01 000 0 00011
Q ss_pred --HHHHHHHHHHhcCCce-EEEEEeCCCC---CCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 119 --LQSLLISIDESIAGKR-FLLVLDDVWD---GDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 119 --~~~~~~~l~~~l~~~~-~LlvlDd~~~---~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+..+...+.+.+.+ =++|||++-. ....+.+.++..+.....+..||+|-|..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122222334444444 4999999843 23345677888888888888999999974
No 323
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.014 Score=55.83 Aligned_cols=154 Identities=19% Similarity=0.125 Sum_probs=79.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc-
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI- 130 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l- 130 (639)
.+-+-+.++||+|.|||.||++++-. .. ..|+++++. .+..++.+. -+.++..+-+..
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATE--An-----STFFSvSSS--------DLvSKWmGE------SEkLVknLFemAR 222 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATE--AN-----STFFSVSSS--------DLVSKWMGE------SEKLVKNLFEMAR 222 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhh--cC-----CceEEeehH--------HHHHHHhcc------HHHHHHHHHHHHH
Confidence 45678999999999999999999773 22 345555543 333333322 122333333222
Q ss_pred CCceEEEEEeCCCCCC-------ccCc----hhhhHhhh---cCCCCcEEEEEccchHHHhhh---cccceEECCCCCHH
Q 006588 131 AGKRFLLVLDDVWDGD-------YIKW----EPFYHCLK---KGLHGSKILITTRNESIASMM---RSTDVISIKELAEE 193 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~-------~~~~----~~l~~~l~---~~~~~~~ilvTsr~~~~~~~~---~~~~~~~l~~l~~~ 193 (639)
.+++-+|++|.++..- ...- ..++-.+. ....|.-|+-.|.-+-+.... .....|.+.--...
T Consensus 223 e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 223 ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 302 (439)
T ss_pred hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHH
Confidence 4688999999985310 0000 11221222 223455555555543222211 11234544433344
Q ss_pred HHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 194 ECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 194 ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.-..+|.-+.+........ +..+++.+.++|+-
T Consensus 303 AR~~MF~lhlG~tp~~LT~----~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 303 ARARMFKLHLGDTPHVLTE----QDFKELARKTEGYS 335 (439)
T ss_pred HhhhhheeccCCCccccch----hhHHHHHhhcCCCC
Confidence 4444777776544333222 23577778887775
No 324
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.014 Score=62.58 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=100.9
Q ss_pred ccccCCCCcccchhhHHHHHHH---HhccCCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 21 TSLIDEEEICGRVGERNALVSM---LLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~---L~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
...+...+.-|.++..+++.+. |..+..+ ...-++-|.+.||+|.|||.||++++-. .. |-|+..+.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE--A~-----VPFf~iSG 216 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AG-----VPFFSISG 216 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc--cC-----CCceeccc
Confidence 3445566788888666555555 4433321 0245678999999999999999999884 22 33333332
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------------CchhhhHhhhcC
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI--------------KWEPFYHCLKKG 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~--------------~~~~l~~~l~~~ 160 (639)
. +..+.+-+. ......+...+..+..||++++|.++..-.. ..++++.-.-.+
T Consensus 217 S--------~FVemfVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 217 S--------DFVEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred h--------hhhhhhcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 2 112222111 1122233344455667899999988542111 123333333334
Q ss_pred C--CCcEEEEEccchHHHhh-----hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 161 L--HGSKILITTRNESIASM-----MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 161 ~--~~~~ilvTsr~~~~~~~-----~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
. .+..|+..|..+++... ....+.+.++.-+...-.+++.-++...... .... ...|++.+-|.-.
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vd----l~~iAr~tpGfsG 356 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVD----LKKIARGTPGFSG 356 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCC----HHHHhhhCCCccc
Confidence 3 23333333444444322 2336688888888888888887666444332 1122 2346666666553
No 325
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.64 E-value=0.015 Score=57.56 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=37.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
...++.|.|++|+|||+++..++.... ..+-..++|+++... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 456899999999999999999887421 222457889988763 34455555444
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.63 E-value=0.01 Score=60.11 Aligned_cols=69 Identities=23% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH----hcCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK----RQFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
..+.++|...- +...++.|+|++|+|||+++..++...... ..-..++|++....++...+. ++++.++
T Consensus 82 ~~lD~~l~GGi----~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 82 KELDELLGGGI----ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHHHHHhcCCC----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 44556665432 256899999999999999999887642211 111379999998887776554 4455443
No 327
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.0091 Score=63.06 Aligned_cols=112 Identities=18% Similarity=0.099 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHc
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEAL 109 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l 109 (639)
++...+..|.+.+.......-+..++++|.|++|+||||++..++...........+..++..... ...+.+......+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL 406 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL 406 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc
Confidence 334444444444422211112346899999999999999998887742222212356666654422 2334444444444
Q ss_pred cCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 006588 110 TGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 144 (639)
+.......+...+...+.+. .+ .=+||+|....
T Consensus 407 gv~v~~a~d~~~L~~aL~~l-~~-~DLVLIDTaG~ 439 (559)
T PRK12727 407 GIAVHEADSAESLLDLLERL-RD-YKLVLIDTAGM 439 (559)
T ss_pred CceeEecCcHHHHHHHHHHh-cc-CCEEEecCCCc
Confidence 43332222333444444432 33 44888898754
No 328
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.63 E-value=0.0058 Score=55.76 Aligned_cols=115 Identities=16% Similarity=0.238 Sum_probs=60.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChh---hHHh---cC--CceEEEEeCCCCchHHHHHHHHHHccCCCC---C----cc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHD---EVKR---QF--DKILWVCVSETFDEFRIAKAMLEALTGSTS---N----LD 117 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~---~~~~---~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~----~~ 117 (639)
...+++|.|+.|+|||||.+.+..+. .... .| ..+.|+. + .+.++.++.... . .+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--------q--~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--------Q--LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--------H--HHHHHHcCCCccccCCCcCcCC
Confidence 45789999999999999998875310 0000 00 0122221 1 345666653211 0 11
Q ss_pred cHHHHHHHHHHhcCCc--eEEEEEeCCCCC-CccCchhhhHhhhcC-CCCcEEEEEccchHHHh
Q 006588 118 ALQSLLISIDESIAGK--RFLLVLDDVWDG-DYIKWEPFYHCLKKG-LHGSKILITTRNESIAS 177 (639)
Q Consensus 118 ~~~~~~~~l~~~l~~~--~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~ 177 (639)
.-+...-.+...+-.+ +-++++|+.... +......+...+... ..+..||++|.+.+...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1222222233444455 678888987442 223334444444432 24667888888876543
No 329
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.62 E-value=0.01 Score=60.08 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH----HhcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV----KRQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
..|.++|...- +...++-|+|++|+|||+|+..++-.... .+.-..++|++....+..+.+.. +++.++.
T Consensus 113 ~~LD~lLgGGi----~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 113 QALDELLGGGI----ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred HhHHhhcCCCC----CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34555665433 36688999999999999999888643222 12235789999998888776544 5666653
No 330
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.61 E-value=0.0079 Score=55.06 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=59.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC--CCchHHHHHHHHHHccCCCCC------------ccc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE--TFDEFRIAKAMLEALTGSTSN------------LDA 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~------------~~~ 118 (639)
...+++|.|+.|.|||||.+.++.. .....+.++++-.. ........ ..+.....+ .+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCH
Confidence 4568999999999999999988763 11223333332111 01111111 111110000 111
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhhcC-CCCcEEEEEccchHHHh
Q 006588 119 LQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKG-LHGSKILITTRNESIAS 177 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~ 177 (639)
-+...-.+...+-.++=++++|+.... |......+...+... ..+..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122222233445566678899987542 222334444444332 23667888888766543
No 331
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.60 E-value=0.011 Score=62.76 Aligned_cols=98 Identities=26% Similarity=0.239 Sum_probs=60.5
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
-+..|.++|...-. ...++.|.|++|+|||||+..++.. ...+-..++|++..+.. .++ ..-++.++....
T Consensus 65 Gi~~LD~~LgGGi~----~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~--~qi-~~ra~rlg~~~~ 135 (446)
T PRK11823 65 GIGELDRVLGGGLV----PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESA--SQI-KLRAERLGLPSD 135 (446)
T ss_pred CcHHHHHHhcCCcc----CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccH--HHH-HHHHHHcCCChh
Confidence 35667777764432 4679999999999999999999884 33334568898876543 222 222444443221
Q ss_pred -----CcccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 006588 115 -----NLDALQSLLISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 144 (639)
...+.+++.+.+. +.++-++|+|.+..
T Consensus 136 ~l~~~~e~~l~~i~~~i~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 136 NLYLLAETNLEAILATIE---EEKPDLVVIDSIQT 167 (446)
T ss_pred cEEEeCCCCHHHHHHHHH---hhCCCEEEEechhh
Confidence 1233444444443 23566899999854
No 332
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.60 E-value=0.0041 Score=58.27 Aligned_cols=108 Identities=9% Similarity=0.135 Sum_probs=55.4
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH-HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF-RIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
+++.|.|++|+||||++..+... ........++. ..++.... .-...+..+-.. ..+.....+.+...+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 57999999999999999887763 33233333332 22221110 000001000000 111223344556666666
Q ss_pred eEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH
Q 006588 134 RFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES 174 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~ 174 (639)
+=++++|++.+.. ....+... ...|..++.|+....
T Consensus 75 pd~ii~gEird~e--~~~~~l~~---a~~G~~v~~t~Ha~~ 110 (198)
T cd01131 75 PDVILVGEMRDLE--TIRLALTA---AETGHLVMSTLHTNS 110 (198)
T ss_pred cCEEEEcCCCCHH--HHHHHHHH---HHcCCEEEEEecCCc
Confidence 7799999996532 22222222 234666777776543
No 333
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.58 E-value=0.022 Score=53.51 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHhcCCceEEEEEeCC-CCCCccCchhhhHhhhcC--CCCcEEEEEccchHHHhhhc
Q 006588 126 IDESIAGKRFLLVLDDV-WDGDYIKWEPFYHCLKKG--LHGSKILITTRNESIASMMR 180 (639)
Q Consensus 126 l~~~l~~~~~LlvlDd~-~~~~~~~~~~l~~~l~~~--~~~~~ilvTsr~~~~~~~~~ 180 (639)
+.+.+-..|-+|+-|+- .+.|...-..+...+... ..|..||+.|.+..++..+.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 44555666777777764 233333334455555443 34778999999998887544
No 334
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.017 Score=56.44 Aligned_cols=99 Identities=25% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH-c---cCCC
Q 006588 38 ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA-L---TGST 113 (639)
Q Consensus 38 ~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l---~~~~ 113 (639)
.|.+.|... -+..+++=|+|+.|+||||+|.+++-. .+..-..++|++....++++.+.. ++.. + ....
T Consensus 48 ~LD~~LGGG----l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~ 120 (279)
T COG0468 48 ALDEALGGG----LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQ 120 (279)
T ss_pred hHHHHhcCC----cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEec
Confidence 344555533 347789999999999999999988773 444445899999998887775433 3333 2 2211
Q ss_pred -CCcccHHHHHHHHHHhcCCceEEEEEeCCC
Q 006588 114 -SNLDALQSLLISIDESIAGKRFLLVLDDVW 143 (639)
Q Consensus 114 -~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~ 143 (639)
.......+.++.+......+--|+|+|.+-
T Consensus 121 ~~~~e~q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 121 PDTGEQQLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCEEEEecCc
Confidence 111223333444444434445588999873
No 335
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.53 E-value=0.013 Score=53.57 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=47.1
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCC---CCcccHHHHH-HHHHHhc
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGST---SNLDALQSLL-ISIDESI 130 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~---~~~~~~~~~~-~~l~~~l 130 (639)
++.+.|++|+||||++..++.. ....-..++.+++.... ...+.+...+...+... ....+..+.. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999988873 33332345666665432 33344444444443211 1112222222 3333333
Q ss_pred CCceEEEEEeCCCCC
Q 006588 131 AGKRFLLVLDDVWDG 145 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~ 145 (639)
....-++|+|-....
T Consensus 80 ~~~~d~viiDt~g~~ 94 (173)
T cd03115 80 EENFDVVIVDTAGRL 94 (173)
T ss_pred hCCCCEEEEECcccc
Confidence 434445668876543
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.012 Score=60.62 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=47.2
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
..++++.|++|+||||++..++........ ..+..++..... ...+.+...++.++.+.....+.......+. ..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---RD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---hC
Confidence 568999999999999999999873222211 245555554432 2334455555555553322222333333332 22
Q ss_pred ceEEEEEeCC
Q 006588 133 KRFLLVLDDV 142 (639)
Q Consensus 133 ~~~LlvlDd~ 142 (639)
..=++|+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3346889943
No 337
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.50 E-value=0.012 Score=59.72 Aligned_cols=69 Identities=25% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh----cCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR----QFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
..+.++|...- +...++.|+|++|+|||++|..++....... .-..++|++....++...+. ++++.++
T Consensus 89 ~~lD~~l~GGi----~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 89 KELDELLGGGI----ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred HHHHHHhcCCc----cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 55666665332 2578999999999999999998876422111 11479999998877766554 4444443
No 338
>PRK08233 hypothetical protein; Provisional
Probab=96.49 E-value=0.0064 Score=56.16 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..+|+|.|++|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999988763
No 339
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.48 E-value=0.015 Score=60.95 Aligned_cols=58 Identities=24% Similarity=0.185 Sum_probs=39.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC-CchHHHHHHHHHHccCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET-FDEFRIAKAMLEALTGS 112 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~ 112 (639)
.+.+|.++|++|+||||+|..++... ..+-..+.-+++... ....+.+..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L--~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF--KKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 57899999999999999999998743 333235555665542 23455666777776543
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.48 E-value=0.0042 Score=56.74 Aligned_cols=110 Identities=13% Similarity=0.021 Sum_probs=56.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
...+++|.|+.|+|||||++.++... .-..+.++++-.. ... . .+....+.-+...-.+...+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~-i~~----------~-~q~~~LSgGq~qrv~laral~~ 88 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGIT-PVY----------K-PQYIDLSGGELQRVAIAAALLR 88 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEE-EEE----------E-cccCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999887631 1122333322100 000 0 0000011222222334444556
Q ss_pred ceEEEEEeCCCCC-CccCchhhhHhhhcC-CC-CcEEEEEccchHHHh
Q 006588 133 KRFLLVLDDVWDG-DYIKWEPFYHCLKKG-LH-GSKILITTRNESIAS 177 (639)
Q Consensus 133 ~~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~-~~~ilvTsr~~~~~~ 177 (639)
++-++++|+.... +......+...+... .. +..||++|.+.....
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 7788999987543 222334444444432 12 256788887765433
No 341
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.47 E-value=0.029 Score=54.56 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=31.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
...++.|.|++|+|||+++..++.+.. ...-..++|+++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC
Confidence 457999999999999999998877422 22145788888765
No 342
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.46 E-value=0.0027 Score=69.50 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=59.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
+..-..++|.++.++.|...+.. .+.+.++|++|+||||+|+.+++.. ....++.++|+.- ...+..+++
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~ 96 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKI 96 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHH
Confidence 34556689999999999988862 2469999999999999999988742 2334577778654 555778888
Q ss_pred HHHHHHccC
Q 006588 103 KAMLEALTG 111 (639)
Q Consensus 103 ~~il~~l~~ 111 (639)
+.++..++.
T Consensus 97 ~~v~~~~G~ 105 (637)
T PRK13765 97 RTVPAGKGK 105 (637)
T ss_pred HHHHHhcCH
Confidence 888887764
No 343
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.46 E-value=0.01 Score=58.20 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=32.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
...++.|.|++|+|||++|.+++.. ...+-..++|++....
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC
Confidence 5689999999999999999998773 2233457889988753
No 344
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.46 E-value=0.014 Score=56.83 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=37.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC-ceEEEEeCCC-CchHHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD-KILWVCVSET-FDEFRIAKAMLE 107 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~il~ 107 (639)
..+.++|.|.+|+|||+|+..+++. ...+|. .++++-+.+. ..+.++...+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 3467899999999999999999984 554564 4445555443 355566666654
No 345
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.46 E-value=0.013 Score=55.96 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=70.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-----CCchHHHHHHHHHHccCCC------CCcccHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-----TFDEFRIAKAMLEALTGST------SNLDALQS 121 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~------~~~~~~~~ 121 (639)
...+++|.|.+|+||||+++.+..- .... .+.+++.-.+ .....+...++++.++... +..-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 5578999999999999999999872 2222 3444443211 2233355666676665322 11112222
Q ss_pred HHH-HHHHhcCCceEEEEEeCCCCCCccCc-hhhhHhhhcC--CCCcEEEEEccchHHHhh
Q 006588 122 LLI-SIDESIAGKRFLLVLDDVWDGDYIKW-EPFYHCLKKG--LHGSKILITTRNESIASM 178 (639)
Q Consensus 122 ~~~-~l~~~l~~~~~LlvlDd~~~~~~~~~-~~l~~~l~~~--~~~~~ilvTsr~~~~~~~ 178 (639)
++. .+.+.+.-++-++|.|+.-.+-..+. .++...+.+. ..+...+..|.+-.+...
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 222 24456677889999999765543332 3333333322 235567777877655443
No 346
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0098 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.||.|.|||||.+.+.-
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 347999999999999999998866
No 347
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.43 E-value=0.0034 Score=62.50 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=45.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.++.+++|++.|...+.......+++.+.||.|.|||||++.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999988876677889999999999999999988866
No 348
>PTZ00035 Rad51 protein; Provisional
Probab=96.41 E-value=0.018 Score=58.55 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH----HhcCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV----KRQFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
...|.++|...- +...++.|+|++|+|||+|+..++..... .+.-..++|++....+..+. ..++++.++
T Consensus 104 ~~~LD~lLgGGi----~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 104 STQLDKLLGGGI----ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred cHHHHHHhCCCC----CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 455666775443 36789999999999999999887653221 11234678999877766655 444555544
No 349
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.024 Score=53.14 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+++-|-++.+++|.+++--+..+- -..++-|.+|||+|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 346788999999998865443321 24667899999999999999998876
No 350
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0082 Score=64.79 Aligned_cols=97 Identities=13% Similarity=0.229 Sum_probs=55.6
Q ss_pred CcccchhhHHHHHHHHhccCCcC------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 28 EICGRVGERNALVSMLLCESSEQ------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
+.=|-++.-++|.+-+.-+-.|. -++..=|.+||++|.|||-+|++++-. -. .-|+++..+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP------ 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP------ 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH------
Confidence 34555555555555443321111 123346899999999999999999772 22 334555443
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 144 (639)
+++.+--+ ++.+...+.+.+.-...||+|+||+++.
T Consensus 740 --ELLNMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMYVG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHHhc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 23333222 2222333334444456899999999965
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.37 E-value=0.017 Score=56.90 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCC----CCcccHHHHHHHH
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGST----SNLDALQSLLISI 126 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~----~~~~~~~~~~~~l 126 (639)
++.+++.+.|++|+||||++..++.. ....-..+..+++.... ...+.+....+..+... ....+.......+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45689999999999999999998874 33333467777766432 22344455555554321 1111222223334
Q ss_pred HHhcCCceEEEEEeCCCCC
Q 006588 127 DESIAGKRFLLVLDDVWDG 145 (639)
Q Consensus 127 ~~~l~~~~~LlvlDd~~~~ 145 (639)
........=++++|-....
T Consensus 148 ~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHCCCCEEEEeCCCCC
Confidence 3333334457888977543
No 352
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.35 E-value=0.02 Score=58.11 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=58.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC-CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET-FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
+.+++.+.||.|+||||....++........=..|..++.++. ....+.++..++-++.+..-..+..++...+... +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 4799999999999999876666654332233356777877664 3666788888888887765445555555555433 3
Q ss_pred CceEEEEEeCCCC
Q 006588 132 GKRFLLVLDDVWD 144 (639)
Q Consensus 132 ~~~~LlvlDd~~~ 144 (639)
+.+ +|.+|-+..
T Consensus 281 ~~d-~ILVDTaGr 292 (407)
T COG1419 281 DCD-VILVDTAGR 292 (407)
T ss_pred cCC-EEEEeCCCC
Confidence 333 555676643
No 353
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.35 E-value=0.026 Score=51.24 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=59.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE-------eCCCCchHHHHHHHHHHccC-CCCCcccHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC-------VSETFDEFRIAKAMLEALTG-STSNLDALQSLLI 124 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-------~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~ 124 (639)
...+++|.|+.|.|||||++.++.... ...+.++++ +.+..... -..+.+.+.. .....+.-+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHH
Confidence 456899999999999999998877421 112222221 11111110 0112222211 1112222333333
Q ss_pred HHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhhcCCCCcEEEEEccchHHH
Q 006588 125 SIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKGLHGSKILITTRNESIA 176 (639)
Q Consensus 125 ~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~ 176 (639)
.+.+.+-.++=++++|+-... |......+...+... +..+|++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 344555567778899987542 222334444444443 35688888776544
No 354
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00027 Score=66.62 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=32.3
Q ss_pred cCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCC
Q 006588 465 LIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTD 524 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 524 (639)
+.+.+-|+..||.+.++. ...+|+.|++|.|+-|. +..+.+ +..+++|+.|.+..|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC 74 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc
Confidence 344555566666665541 23456666666666666 333332 5666677777666664
No 355
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.33 E-value=0.0052 Score=61.17 Aligned_cols=97 Identities=26% Similarity=0.188 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC-
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS- 114 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~- 114 (639)
...|...|.... -+..+++-|+|++|+||||||..++. .....-..++|++.....+. ..+..++...+
T Consensus 38 ~~~LD~aLg~GG---~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~r 107 (322)
T PF00154_consen 38 SPALDYALGIGG---LPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDP-----EYAESLGVDLDR 107 (322)
T ss_dssp -HHHHHHTSSSS---EETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---H-----HHHHHTT--GGG
T ss_pred CcccchhhccCc---cccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchh-----hHHHhcCccccc
Confidence 345666665222 33567999999999999999998887 34445567899999876544 33444443321
Q ss_pred ----CcccHHHHHHHHHHhcCCc-eEEEEEeCC
Q 006588 115 ----NLDALQSLLISIDESIAGK-RFLLVLDDV 142 (639)
Q Consensus 115 ----~~~~~~~~~~~l~~~l~~~-~~LlvlDd~ 142 (639)
.....++....+...++.. .-++|+|-|
T Consensus 108 llv~~P~~~E~al~~~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 108 LLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-C
T ss_pred eEEecCCcHHHHHHHHHHHhhcccccEEEEecC
Confidence 1233445555555555443 458899987
No 356
>PRK07667 uridine kinase; Provisional
Probab=96.33 E-value=0.008 Score=56.05 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
++.+.+.+.... +...+|+|.|.+|+||||+|..+.+.
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345556665443 35589999999999999999988873
No 357
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.32 E-value=0.0051 Score=54.37 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEe
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCV 92 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 92 (639)
..+|.|+|.+|+||||||+++.+ +....-..+++++-
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecC
Confidence 46899999999999999999988 45555566777654
No 358
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.31 E-value=0.025 Score=60.01 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=57.2
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
-+..|.++|...- ....++.|.|++|+|||||+..++.. ...+-..++|++..+.. .++. .-+..++....
T Consensus 79 Gi~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs~--~qi~-~ra~rlg~~~~ 149 (454)
T TIGR00416 79 GFGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEESL--QQIK-MRAIRLGLPEP 149 (454)
T ss_pred CcHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCCH--HHHH-HHHHHcCCChH
Confidence 3566777775443 25679999999999999999998774 32233468898876542 2222 12233332211
Q ss_pred -----CcccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 006588 115 -----NLDALQSLLISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 144 (639)
...+.+.+...+.+ .++-++|+|.+..
T Consensus 150 ~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 150 NLYVLSETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred HeEEcCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 11234444433322 3455788887743
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0096 Score=54.50 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=61.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC------CC--------ccc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST------SN--------LDA 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~--------~~~ 118 (639)
...+++|.|+.|.|||||++.++... ....+.++++-....... ..+...+.... .. .+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 45689999999999999999887731 122344443211100000 01111111000 00 111
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhhcC-CCCcEEEEEccchHHHh
Q 006588 119 LQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKG-LHGSKILITTRNESIAS 177 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~ 177 (639)
-+...-.+...+-.++-++++|+.... |......+...+... ..+..+|++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 122222344556677889999987543 222334444444432 23567888888765443
No 360
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.29 E-value=0.024 Score=54.96 Aligned_cols=143 Identities=16% Similarity=0.242 Sum_probs=74.5
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHh----------cCCceEEEEeCCCC-chHHHHHHHHHHccCCC---------CC
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKR----------QFDKILWVCVSETF-DEFRIAKAMLEALTGST---------SN 115 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~----------~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~---------~~ 115 (639)
+..|.|++|+|||+||..++....... .-..|++++..... ...+-+..+...+.... ..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 568999999999999988876421111 22347777776654 34444455555432100 00
Q ss_pred c----------ccHHHHHHHHHHhc-CCceEEEEEeCCCC------CCccCchhhhHhhhcC--CCCcEEEEEccchHHH
Q 006588 116 L----------DALQSLLISIDESI-AGKRFLLVLDDVWD------GDYIKWEPFYHCLKKG--LHGSKILITTRNESIA 176 (639)
Q Consensus 116 ~----------~~~~~~~~~l~~~l-~~~~~LlvlDd~~~------~~~~~~~~l~~~l~~~--~~~~~ilvTsr~~~~~ 176 (639)
. .......+.+.+.+ ..++-++|+|.+.. .+......+...+... ..++.|++++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 01122233333322 34567999997632 1112233344444322 2467788887653211
Q ss_pred h--------------hhc-ccceEECCCCCHHHHHHH
Q 006588 177 S--------------MMR-STDVISIKELAEEECWAL 198 (639)
Q Consensus 177 ~--------------~~~-~~~~~~l~~l~~~ea~~l 198 (639)
. ..+ ..-.+.+..++.+|+.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 0 011 123667778888888774
No 361
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0098 Score=53.92 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=24.1
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKI 87 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~ 87 (639)
+.|.++|.||+||||+|+++++ ..+.+-..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak--~L~~~i~~v 32 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK--ELRQEIWRV 32 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH--HHHHhhhhc
Confidence 4689999999999999999988 444443333
No 362
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.038 Score=53.11 Aligned_cols=129 Identities=9% Similarity=0.029 Sum_probs=72.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC------CCCcccHHHH---H
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS------TSNLDALQSL---L 123 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~~---~ 123 (639)
.+....++|+.|+||.++|.+++... ...+ .. ..++.-...+.+...-+.. ....-.+++. .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~l-lC~~-~~-------~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~ 76 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSI-VCTK-AN-------GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSII 76 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHH-cCCC-CC-------CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHH
Confidence 56789999999999999998887642 1100 00 0111112222222211100 0001112222 2
Q ss_pred HHHHHhc--CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-HhhhcccceEECCCC
Q 006588 124 ISIDESI--AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASMMRSTDVISIKEL 190 (639)
Q Consensus 124 ~~l~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~~~~~~~~~l~~l 190 (639)
+.+...- .++.=++|+|+++.+.....+.+++.+....+++.+|++|.+.+ + .+..++...+.+...
T Consensus 77 ~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 77 NKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred HHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 2222111 13456779999999988889999999999888888888777543 2 233333445666555
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=96.28 E-value=0.018 Score=60.26 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-CCceEEEEeCCCCc-hHHHHHHHHHHcc
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-FDKILWVCVSETFD-EFRIAKAMLEALT 110 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~-~~~~~~~il~~l~ 110 (639)
..+.++.+.|++|+||||++..++.. ...+ -..+..+++..... ..+.+..+++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~g 156 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIG 156 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEccccchHHHHHHHHHHhhcC
Confidence 34789999999999999999888874 3333 23566666654332 2344555555554
No 364
>PRK13695 putative NTPase; Provisional
Probab=96.27 E-value=0.0076 Score=55.24 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.++|.|++|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988764
No 365
>PF13479 AAA_24: AAA domain
Probab=96.26 E-value=0.014 Score=55.38 Aligned_cols=32 Identities=38% Similarity=0.321 Sum_probs=25.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
.-.++|+|++|+||||+|..+ +..++++....
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 457999999999999999766 45777777654
No 366
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.25 E-value=0.0072 Score=65.57 Aligned_cols=136 Identities=14% Similarity=0.042 Sum_probs=74.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
.....+++|....+.++.+.+..... ...-|.|+|++|+||+.+|+.+.+. ....-..-+.++|.... .+.+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~~--~~~~ 271 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASIP--DDVV 271 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccCC--HHHH
Confidence 34455799999988888877764443 3345899999999999999886441 11122334566666543 1222
Q ss_pred HHHHHHccCCCCCc-ccH-HHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEE
Q 006588 103 KAMLEALTGSTSNL-DAL-QSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILIT 169 (639)
Q Consensus 103 ~~il~~l~~~~~~~-~~~-~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvT 169 (639)
. ..+.+...+. ... +.....+.. .+. =.|+||+++.........+..++.... ...+||.|
T Consensus 272 e---~elFG~~~~~~~~~~~~~~g~~e~--a~~-GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~s 345 (520)
T PRK10820 272 E---SELFGHAPGAYPNALEGKKGFFEQ--ANG-GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 345 (520)
T ss_pred H---HHhcCCCCCCcCCcccCCCChhhh--cCC-CEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEe
Confidence 1 1222211100 000 000001110 122 347899998876555566777765421 13478887
Q ss_pred ccc
Q 006588 170 TRN 172 (639)
Q Consensus 170 sr~ 172 (639)
|..
T Consensus 346 t~~ 348 (520)
T PRK10820 346 TQK 348 (520)
T ss_pred cCC
Confidence 764
No 367
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.25 E-value=0.0069 Score=57.57 Aligned_cols=65 Identities=25% Similarity=0.222 Sum_probs=38.4
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
+..++.+.+... ..+..+|+|+|+||+|||||+.++.......++=.+|+=|+=+++++--.++.
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 445555555543 23678999999999999999999988654444434555555555655544433
No 368
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0091 Score=53.65 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=62.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
+..+++|.|+.|.|||||++.++.. . ....+.++++-....... .......+....+ .+.-+...-.+...+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCC--HHHHHhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 3478999999999999999998773 2 223455554332111100 0111111211100 12222233334445556
Q ss_pred ceEEEEEeCCCCC-CccCchhhhHhhhcC-CCCcEEEEEccchHHHhh
Q 006588 133 KRFLLVLDDVWDG-DYIKWEPFYHCLKKG-LHGSKILITTRNESIASM 178 (639)
Q Consensus 133 ~~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~~ 178 (639)
++-++++|+.... |......+...+... ..+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999998542 223334444444432 124668888887655443
No 369
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.23 E-value=0.012 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999884
No 370
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.22 E-value=0.012 Score=66.07 Aligned_cols=132 Identities=18% Similarity=0.135 Sum_probs=74.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
...++|....+.++.+....... ...-|.|+|++|+||+++|+.+.+. ....-..-+.|+|..... ..+..++
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~--s~r~~~pfv~vnc~~~~~-~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNE--SERAAGPYIAVNCQLYPD-EALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHh--CCccCCCeEEEECCCCCh-HHHHHHh
Confidence 45689999988888888776553 3445899999999999999888662 111223344566655432 2222222
Q ss_pred HHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 106 LEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
.+....... ......+. ....=.|+||+++.........+...+.... -..+||.||..
T Consensus 397 ----fg~~~~~~~-~~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 ----LGSDRTDSE-NGRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred ----cCCCCcCcc-CCCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 221111000 00000000 1123458999998876555566777665421 13467777654
No 371
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.20 E-value=0.013 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
++.|.|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988773
No 372
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.20 E-value=0.037 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 557999999999999999988865
No 373
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.20 E-value=0.0079 Score=54.57 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=72.7
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHH---HHHHHHHHhcCC
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQ---SLLISIDESIAG 132 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~~~~~l~~~l~~ 132 (639)
.+.|.|.+|+|||++|..++.. .. ..++++.-... .-.+....+..-.......-..++ .+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 6899999999999999988652 11 13445443332 223333333222111111111111 12222332222
Q ss_pred ceEEEEEeCCCCC-------Cc-cCc----hhhhHhhhcCCCCcEEEEEccchHHHhhhcccceEECCCCCHHHHHHHHH
Q 006588 133 KRFLLVLDDVWDG-------DY-IKW----EPFYHCLKKGLHGSKILITTRNESIASMMRSTDVISIKELAEEECWALFK 200 (639)
Q Consensus 133 ~~~LlvlDd~~~~-------~~-~~~----~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~~~~~~l~~l~~~ea~~l~~ 200 (639)
+.-++++|.+... +. ..+ ..+...+.. .+..+|+|+.+ +.......++..+.|.
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~--~~~tvVlVs~E------------vg~g~vp~~~~~r~~~ 141 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ--LPAKIILVTNE------------VGMGIVPEYRLGRHFR 141 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc--CCCCEEEEEcC------------CcccccCCCHHHHHHH
Confidence 2337889986221 10 111 122223332 45557777643 2223334445556666
Q ss_pred HHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 201 QLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
...+ .-...+...+++++.-..|.|+-+
T Consensus 142 d~lG-----~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAG-----RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHH-----HHHHHHHHHCCEEEEEeCCCcEec
Confidence 6554 333334444556666667777643
No 374
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.19 E-value=0.024 Score=53.61 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=36.3
Q ss_pred HhcCCceEEEEEeCCCCC-CccCchhhhHhhhcC-CCCcEEEEEccchHHHhhhcccceEECCCCCH
Q 006588 128 ESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKG-LHGSKILITTRNESIASMMRSTDVISIKELAE 192 (639)
Q Consensus 128 ~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~~~~~~~~~~l~~l~~ 192 (639)
..+-.++-++++|+-... +......+...+... ..+..||++|.+...... .+.+.++.++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 344556789999987542 223344455555432 346678888887654442 45666665443
No 375
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.18 E-value=0.034 Score=51.21 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=65.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC---------------------------------------
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS--------------------------------------- 93 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--------------------------------------- 93 (639)
...+++|.|++|+|||||.+.+-.- ..--.+.+|++-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4578999999999999999877441 1111334444211
Q ss_pred -----CCCchHHHHHHHHHHccCCC------CCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-CchhhhHhhhcC-
Q 006588 94 -----ETFDEFRIAKAMLEALTGST------SNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-KWEPFYHCLKKG- 160 (639)
Q Consensus 94 -----~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-~~~~l~~~l~~~- 160 (639)
+....++...+++++++... ...+--++-.-.+.+.+.-+|-++.+|+.-.+-+- -...++..+...
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 11122234444444444321 01111222233355566778888999998665222 223444444432
Q ss_pred CCCcEEEEEccchHHHh
Q 006588 161 LHGSKILITTRNESIAS 177 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~~~ 177 (639)
..|...++.|.+-..+.
T Consensus 184 ~eGmTMivVTHEM~FAr 200 (240)
T COG1126 184 EEGMTMIIVTHEMGFAR 200 (240)
T ss_pred HcCCeEEEEechhHHHH
Confidence 35777778887755443
No 376
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0093 Score=55.58 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 28 EICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+.-|-+-.-+++++..+-+..+- -++++-|.++|++|+|||.||++++++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 35667777777777665433211 256788999999999999999999984
No 377
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.14 E-value=0.055 Score=53.01 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=59.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC--------cccHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN--------LDALQSLLI 124 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--------~~~~~~~~~ 124 (639)
..+.++|.|++|+|||||.+.++.. .. ...+.++++-..-... +-..++.......... .+.... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchH-HH
Confidence 3578999999999999999999873 22 2234444421111111 1112332222111100 011111 11
Q ss_pred HHHHhc-CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHH
Q 006588 125 SIDESI-AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIA 176 (639)
Q Consensus 125 ~l~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~ 176 (639)
.+...+ ...+-++++|++... ..+..+...+ ..|..+|+||....+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 122222 257889999998543 2344444443 3477899999875543
No 378
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.14 E-value=0.02 Score=63.71 Aligned_cols=97 Identities=24% Similarity=0.149 Sum_probs=64.0
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
+..|..+|. .. =+..+++.|+|++|+|||+||..++.. ....-..++|++....+.. ..++.++....
T Consensus 45 i~~LD~lLg~GG----ip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~ 113 (790)
T PRK09519 45 SIALDVALGIGG----LPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTD 113 (790)
T ss_pred cHHHHHhhcCCC----ccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChh
Confidence 456777775 22 235789999999999999999887763 3344467899988776663 35666654321
Q ss_pred -----CcccHHHHHHHHHHhcC-CceEEEEEeCCC
Q 006588 115 -----NLDALQSLLISIDESIA-GKRFLLVLDDVW 143 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~ 143 (639)
...+.++....+...++ ++.-|+|+|.+.
T Consensus 114 ~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 114 SLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 12234445555555444 356799999985
No 379
>PRK05439 pantothenate kinase; Provisional
Probab=96.12 E-value=0.042 Score=54.74 Aligned_cols=26 Identities=42% Similarity=0.446 Sum_probs=23.2
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.+-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999999988876
No 380
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0066 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...-++|+|++|+||||++..+++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH
Confidence 4567999999999999999999884
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.10 E-value=0.032 Score=58.38 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=36.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc-hHHHHHHHHHHccC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD-EFRIAKAMLEALTG 111 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~ 111 (639)
.+.++.+.|++|+||||+|..++..... ..-..+.-+++..... ..+.+.......+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~-~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv 156 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKK-KQGKKVLLVACDLYRPAAIEQLKVLGQQVGV 156 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCeEEEEeccccchHHHHHHHHHHHhcCC
Confidence 4689999999999999999888874211 1223456666654332 33444455555543
No 382
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.015 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998875
No 383
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.055 Score=48.63 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCC-CccCchhhhHhhh-cCCCCcEEEEEccch
Q 006588 119 LQSLLISIDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLK-KGLHGSKILITTRNE 173 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~-~~~~~~~ilvTsr~~ 173 (639)
-++..-.+.+.+-.++-|-|||+.... |......+...+. ....|..||.||..+
T Consensus 134 GQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred hHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 344444455666788899999998654 2222333333333 345677899999864
No 384
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.07 E-value=0.0096 Score=64.14 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
.+++|....++++.+.+..... ...-|.|.|++|+||+.+|+.+.+. ....-...+-++|.... +..+ -
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~--S~r~~~pfv~inC~~l~--e~ll---e 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL--SGRRDFPFVAINCGAIA--ESLL---E 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh--cCcCCCCEEEeccccCC--hhHH---H
Confidence 4589999999999998865543 4567999999999999999888662 11122334455665432 1222 2
Q ss_pred HHccCCCCCc-ccH--HHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 107 EALTGSTSNL-DAL--QSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 107 ~~l~~~~~~~-~~~--~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
..+++...+. ... ......+. ....=-|+||+++.........+...+.... ...+||.||..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 2233221110 000 00001111 1122348999998876555566777665421 13377777754
No 385
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.07 E-value=0.024 Score=52.93 Aligned_cols=21 Identities=52% Similarity=0.673 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+|+|.|++|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 386
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.06 E-value=0.022 Score=53.17 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=29.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHh--------cCCceEEEEeCCCC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKR--------QFDKILWVCVSETF 96 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--------~f~~~~wv~~~~~~ 96 (639)
..++.|.|++|+|||+++..++....... +-..++|++.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 35899999999999999988877543222 23478999887663
No 387
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.05 E-value=0.035 Score=54.27 Aligned_cols=91 Identities=9% Similarity=0.125 Sum_probs=52.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
+...+++.|++|+||||++..++.. ...+-..+.++++.... ...+.+......++.+.....+...+.+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3479999999999999999888763 33222456777765432 33344445555554332222233334333333212
Q ss_pred -CceEEEEEeCCCCC
Q 006588 132 -GKRFLLVLDDVWDG 145 (639)
Q Consensus 132 -~~~~LlvlDd~~~~ 145 (639)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24468899988554
No 388
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.04 E-value=0.007 Score=51.96 Aligned_cols=40 Identities=20% Similarity=0.061 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
++..++-+.|..... ...+++|.|+.|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 445555555554322 4568999999999999999999874
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.04 E-value=0.0055 Score=50.94 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHhcCh
Q 006588 57 ISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~ 77 (639)
|.|+|++|+|||++|..++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998885
No 390
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.02 E-value=0.046 Score=52.94 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=83.2
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
..+......|++-..... +..++.... ...+.+.++|.+|+|||+-++.+++. .+.++-+..+..++..
T Consensus 65 ~~~~~~~~~~l~tkt~r~-~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~ 133 (297)
T COG2842 65 AALEKLAPDFLETKTVRR-IFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTAL 133 (297)
T ss_pred cccccccccccccchhHh-Hhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHH
Confidence 344555667777665422 222332222 24459999999999999999988883 3344555677777777
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhc
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKK 159 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~ 159 (639)
.+...+......... ..+......+...+.+..=+++.|+.+......++.+......
T Consensus 134 ~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 134 VLILIICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHHHHHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 787777777765542 3444455555555677778999999988766666666654444
No 391
>PLN02348 phosphoribulokinase
Probab=96.02 E-value=0.077 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+...+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988873
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.00 E-value=0.0045 Score=53.36 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHhcCh
Q 006588 57 ISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~ 77 (639)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988774
No 393
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.99 E-value=0.031 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|.|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999887663
No 394
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.98 E-value=0.029 Score=55.39 Aligned_cols=26 Identities=38% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.+.+|+|.|++|+||||+|+.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999987755
No 395
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.98 E-value=0.0093 Score=62.16 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCcccchhhHHHHHHHHhc----cCC------cCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 26 EEEICGRVGERNALVSMLLC----ESS------EQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~----~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+..+||.+...+.+...+.. ... ......+.+.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34589999999988665521 100 0011246799999999999999998875
No 396
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0037 Score=58.96 Aligned_cols=84 Identities=33% Similarity=0.449 Sum_probs=51.3
Q ss_pred hhCCceeEEecCCC--CCCCcccccccccCCCcEEeccCCCCcccc--hhhhcCCCccEEecCCCCCccccch----hhh
Q 006588 439 RELTSLRALDFPSL--YLPSEIPRNIKKLIHLRYLNLSGQKIEKLP--EALCELYNLEKLDICSCSCLKELPE----GIG 510 (639)
Q Consensus 439 ~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~~~ 510 (639)
-.|++|+.|.++.| ...+.++...-.+++|++|++++|+|..+. .....+.+|..|++.+|.... +-. .+.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHH
Confidence 34667777777777 444445544555677888888888776421 134556677777777776443 211 145
Q ss_pred hcccCceeecCCC
Q 006588 511 KLINMKYLLNRDT 523 (639)
Q Consensus 511 ~l~~L~~L~l~~n 523 (639)
-+++|++|+--..
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 5677777765443
No 397
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.97 E-value=0.021 Score=59.19 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=36.5
Q ss_pred CCCCcccchhhHHHHHHHHhc----cC---CcCC-----CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 25 DEEEICGRVGERNALVSMLLC----ES---SEQQ-----KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~----~~---~~~~-----~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
-+...||.++..+.+..++.. .. .... -....+.|.|++|+|||++|+.++.
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 344579999999998766621 00 0000 1235799999999999999998876
No 398
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.028 Score=51.52 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.1
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHh
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLA 74 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~ 74 (639)
+||-...++.+.=-+ +..++.++.||+|+||||+.+.+
T Consensus 16 yYg~~~aL~~i~l~i--------~~~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 16 YYGDKHALKDINLDI--------PKNKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred EECchhhhccCceec--------cCCceEEEECCCCcCHHHHHHHH
Confidence 677544444443222 35689999999999999999766
No 399
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.95 E-value=0.036 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998875
No 400
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.95 E-value=0.055 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999988865
No 401
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.052 Score=54.20 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=43.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 24 IDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
+.=+++.|-.+..+.|+++..-+-. +...+=+-|.++||+|.|||-||++++-. .+..|+++++.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE-------c~tTFFNVSss 279 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE-------CGTTFFNVSSS 279 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh-------hcCeEEEechh
Confidence 3334567777777777766432221 11345578999999999999999999772 23677777653
No 402
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.91 E-value=0.0093 Score=57.50 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
..+..+|+|+|.||+|||||..++.......++=..|+=|+-+++++--.++..=.+.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM 105 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRM 105 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhH
Confidence 3478899999999999999999988865555555677777777777776666554443
No 403
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.90 E-value=0.058 Score=49.75 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998876
No 404
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.90 E-value=0.084 Score=49.86 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998865
No 405
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.90 E-value=0.016 Score=59.36 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=38.7
Q ss_pred CCCCcccchhhHHHHHHHHhcc-C-----C--cCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 25 DEEEICGRVGERNALVSMLLCE-S-----S--EQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~-~-----~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+..+||.++....+.-++... . . ...-.++.|.++|++|+|||++|+.++.
T Consensus 10 Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 10 LDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred HhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999998777642 0 0 0011246899999999999999999987
No 406
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.89 E-value=0.0046 Score=46.69 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+++|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988773
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.012 Score=53.74 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.|.|.|++|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988774
No 408
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.18 Score=54.94 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=93.1
Q ss_pred cccchhhHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 29 ICGRVGERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
--+++..+..+.+.+....... .....++.++|.+|+||||+++.++. +...++ +=+++. ++
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas--~lg~h~---~evdc~----------el 467 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS--ELGLHL---LEVDCY----------EL 467 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH--HhCCce---EeccHH----------HH
Confidence 4566777777888887554310 02346899999999999999999988 344333 112111 11
Q ss_pred HHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCC----CCccCchhhhHhh--------hc-CCCCcEEEEEccc
Q 006588 106 LEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWD----GDYIKWEPFYHCL--------KK-GLHGSKILITTRN 172 (639)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~----~~~~~~~~l~~~l--------~~-~~~~~~ilvTsr~ 172 (639)
+.+-. .-....+.....+.-...+.+|+|-|++- .+..+...+.+.+ .. ..++..++.|+.+
T Consensus 468 ~~~s~-----~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s 542 (953)
T KOG0736|consen 468 VAESA-----SHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSS 542 (953)
T ss_pred hhccc-----chhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccc
Confidence 11110 01112222223333345677777776632 1111111121111 11 2234444555443
Q ss_pred -hHHHhhh--cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 173 -ESIASMM--RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 173 -~~~~~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
+.+.... ...+.+.++.++.++-.++|+.+.-...-. .....+.++++|.|.-+
T Consensus 543 ~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-----~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 543 IEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-----QDVNLKQLARKTSGFSF 599 (953)
T ss_pred cccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-----hHHHHHHHHHhcCCCCH
Confidence 2222211 235688999999999999999887422211 11124567777766554
No 409
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.88 E-value=0.0074 Score=59.36 Aligned_cols=138 Identities=17% Similarity=0.248 Sum_probs=63.3
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
.+-|.+.|++|+|||++++.+.+... ...| .+.-++++..-+...++ .+++.-.....+. ...--.++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~---------~~gP~~~k 100 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR---------VYGPPGGK 100 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE---------EEEEESSS
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC---------CCCCCCCc
Confidence 46689999999999999988765211 1111 13344554433333332 2221111100000 00012468
Q ss_pred eEEEEEeCCCCCCccCc------hhhhHhhhcCC------------CCcEEEEEccch----HHH-hhhcccceEECCCC
Q 006588 134 RFLLVLDDVWDGDYIKW------EPFYHCLKKGL------------HGSKILITTRNE----SIA-SMMRSTDVISIKEL 190 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~------~~l~~~l~~~~------------~~~~ilvTsr~~----~~~-~~~~~~~~~~l~~l 190 (639)
++++++||+.-+....| +.++..+...+ ....++-+.... .+. ........+.+...
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p 180 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYP 180 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCC
Confidence 89999999965543333 22333332211 123233332211 111 12234557788888
Q ss_pred CHHHHHHHHHHHh
Q 006588 191 AEEECWALFKQLA 203 (639)
Q Consensus 191 ~~~ea~~l~~~~~ 203 (639)
+.+....+|....
T Consensus 181 ~~~sl~~If~~il 193 (272)
T PF12775_consen 181 SDESLNTIFSSIL 193 (272)
T ss_dssp TCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 8888888877654
No 410
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.043 Score=54.54 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=90.1
Q ss_pred cccchhhHHHHHHHHhccCCc--------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 29 ICGRVGERNALVSMLLCESSE--------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~--------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
.=|-+...+++.+...-+... --..++-|.++||+|+|||-||++++. +....|-.+- ++.. +.
T Consensus 94 IggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ak--eaga~fInv~---~s~l-t~-- 165 (386)
T KOG0737|consen 94 IGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAK--EAGANFINVS---VSNL-TS-- 165 (386)
T ss_pred ccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHH--HcCCCcceee---cccc-ch--
Confidence 445566666666553322110 024567899999999999999999988 5666664331 1111 10
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCC-------ccC----chhhhHhhhcC--CCCcEE
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGD-------YIK----WEPFYHCLKKG--LHGSKI 166 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~-------~~~----~~~l~~~l~~~--~~~~~i 166 (639)
++. .+.+.++..+-.. -+=+|++|++|.++..- .+. -.+|...|... +.+.+|
T Consensus 166 -------KWf------gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 166 -------KWF------GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred -------hhH------HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence 111 1111122222111 13368899999885421 000 12233333322 344456
Q ss_pred EEE---ccchHHHhh--hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 167 LIT---TRNESIASM--MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 167 lvT---sr~~~~~~~--~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
+|- -|..++... ......+.|.--+...-.+++.-.....+.. ..-+ ..+|+..|.|+-
T Consensus 233 lVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD----~~~iA~~t~GyS 296 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVD----LDEIAQMTEGYS 296 (386)
T ss_pred EEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccC----HHHHHHhcCCCc
Confidence 653 333333222 1334566666555666666665555433332 2222 578888898886
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.87 E-value=0.034 Score=57.86 Aligned_cols=56 Identities=25% Similarity=0.207 Sum_probs=35.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHcc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALT 110 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~ 110 (639)
.+.+|.+.|++|+||||++..++... ..+-..+..+++.... ...+.++...+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l--~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~ 155 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY--QRKGFKPCLVCADTFRAGAFDQLKQNATKAR 155 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEcCcccchhHHHHHHHHhhccC
Confidence 46899999999999999999888743 2322356666665432 22333344444443
No 412
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.86 E-value=0.069 Score=59.60 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...|+|.|.+|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999988755
No 413
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.85 E-value=0.0061 Score=53.74 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.02 Score=53.75 Aligned_cols=119 Identities=19% Similarity=0.191 Sum_probs=59.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCc-------ccHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNL-------DALQSLLIS 125 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-------~~~~~~~~~ 125 (639)
..++++|.|+.|.||||+.+.++... ...+. -.++.+.. .. -.....+...+....... ....+.. .
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~ 101 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA-Y 101 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH-H
Confidence 34789999999999999998876531 11111 11221111 00 012222222222211000 1112221 1
Q ss_pred HHHhcCCceEEEEEeCCCCCCcc-C----chhhhHhhhcCCCCcEEEEEccchHHHhhhc
Q 006588 126 IDESIAGKRFLLVLDDVWDGDYI-K----WEPFYHCLKKGLHGSKILITTRNESIASMMR 180 (639)
Q Consensus 126 l~~~l~~~~~LlvlDd~~~~~~~-~----~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~ 180 (639)
+.. +..++-|+++|+....... + ...+...+... ++.+|++|...++.....
T Consensus 102 il~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhh
Confidence 222 2356789999998543211 1 12233344333 778999999887666543
No 415
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.019 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.++|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998874
No 416
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.83 E-value=0.048 Score=51.44 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988866
No 417
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.011 Score=51.45 Aligned_cols=45 Identities=31% Similarity=0.316 Sum_probs=32.2
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST 113 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 113 (639)
+|.|.|++|+||||+|+.++.+... -+++ .-.+++++++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~vs------aG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-------KLVS------AGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-------ceee------ccHHHHHHHHHcCCCH
Confidence 5899999999999999988774211 1222 2257888888877543
No 418
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.82 E-value=0.013 Score=67.39 Aligned_cols=183 Identities=17% Similarity=0.144 Sum_probs=93.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhc---CCceEEEEeCC----CCchH--HHHHHHHHHccCCCCCcccHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQ---FDKILWVCVSE----TFDEF--RIAKAMLEALTGSTSNLDALQSLL 123 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~~~----~~~~~--~~~~~il~~l~~~~~~~~~~~~~~ 123 (639)
...-+.|.|.+|+||||+...++--. ..+. =+..+|+.+.. ..... .+..-+...+.... ......
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~ 295 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLI 295 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----Ccchhh
Confidence 34479999999999999997776531 1111 13344444431 11111 22222222222222 122222
Q ss_pred HHHHHhcCCceEEEEEeCCCCCCccCchh----hhHhhhcCCCCcEEEEEccchHHHhhhcccceEECCCCCHHHHHHHH
Q 006588 124 ISIDESIAGKRFLLVLDDVWDGDYIKWEP----FYHCLKKGLHGSKILITTRNESIASMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 124 ~~l~~~l~~~~~LlvlDd~~~~~~~~~~~----l~~~l~~~~~~~~ilvTsr~~~~~~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
....+.++..++++++|.++......-.. +..+++.. +.+++|+|+|.............+++..+..+......
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~-~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY-PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc-cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 22356678899999999987654333222 33333333 46789999987554443333456666666665555333
Q ss_pred HH-----Hh---hCCCCch---hhhHHHHHHHHHHHHcCCchhHHHHHHhhhc
Q 006588 200 KQ-----LA---FFGRSTE---ECEKLEQIGQRIARKCKGLPLAAKTMGGLMS 241 (639)
Q Consensus 200 ~~-----~~---~~~~~~~---~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 241 (639)
.. .. ....... ....+..--..-++.....|++|.+.+..-.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 31 11 1111101 0011111112233344888999999986554
No 419
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.82 E-value=0.0029 Score=53.31 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHhcChhhHHhcCC
Q 006588 57 ISIVGMGGIGKTTLAQLACNHDEVKRQFD 85 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~ 85 (639)
|.|+|.+|+|||++|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 78999999999999999988 4555553
No 420
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.81 E-value=0.046 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999988764
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.045 Score=56.90 Aligned_cols=89 Identities=18% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
+..+++++.|+.|+||||++..++...........+..+.... .....+.+..+.+.++.+.....+..+....+.. +
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-L 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-h
Confidence 3567999999999999999998876322222223455555443 3344555666666666554322333333333332 3
Q ss_pred CCceEEEEEeCC
Q 006588 131 AGKRFLLVLDDV 142 (639)
Q Consensus 131 ~~~~~LlvlDd~ 142 (639)
.+. -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 333 45667765
No 422
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.81 E-value=0.14 Score=53.69 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=31.9
Q ss_pred chhhHHHHHHHHh-----ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 32 RVGERNALVSMLL-----CESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 32 R~~~~~~l~~~L~-----~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+.+.++..||. ... -+.+++.|+||+|+||||.++.++.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~----l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPK----LGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccC----CCceEEEEeCCCCCCchhHHHHHHH
Confidence 3456777888887 332 2667999999999999999987765
No 423
>PF13245 AAA_19: Part of AAA domain
Probab=95.80 E-value=0.015 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.++++|.|++|.|||+++.+.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999666555553
No 424
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.80 E-value=0.051 Score=47.78 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+.|.||+|+|||||.+.++.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHh
Confidence 45789999999999999999987
No 425
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.78 E-value=0.057 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|.|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988763
No 426
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.78 E-value=0.017 Score=62.06 Aligned_cols=56 Identities=20% Similarity=0.084 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
.-+..|.++|...-. ...++.|.|++|+|||||+.+++.. ...+-..++|+...+.
T Consensus 247 tGi~~lD~~lgGG~~----~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 247 SGVVRLDEMCGGGFF----KDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES 302 (484)
T ss_pred CChHhHHHHhcCCcc----CCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC
Confidence 345677888876543 6789999999999999999999884 3344456788877653
No 427
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.072 Score=51.24 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||.+.++.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998865
No 428
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.02 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|.++|.+|.||||+|.++..
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 568999999999999999999877
No 429
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.77 E-value=0.031 Score=52.42 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...+++|.|.+|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998877
No 430
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.066 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|+|||||++.++..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4579999999999999999888763
No 431
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.76 E-value=0.0049 Score=60.36 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.4
Q ss_pred EEEEEEcCCCChHHHHHHHhcCh
Q 006588 55 HIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..|+|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47999999999999999999884
No 432
>PRK06547 hypothetical protein; Provisional
Probab=95.75 E-value=0.011 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....+|+|.|++|+||||+|+.+++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 433
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.75 E-value=0.044 Score=52.65 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+.+.+++|.|++|+|||||++.++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998877
No 434
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.71 E-value=0.0094 Score=56.36 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+...+|+|.|++|+|||||++.++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998876
No 435
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.3 Score=49.43 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=38.1
Q ss_pred cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 180 RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 180 ~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.....++++.++.+|+.++...+....=- .+...-++-..++.-...|+|--++-++.++
T Consensus 401 qpf~pi~v~nYt~~E~~~~i~YYl~~nwl-~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 401 QPFVPIEVENYTLDEFEALIDYYLQSNWL-LKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCcCccccCCCCHHHHHHHHHHHHHhhHH-HhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34557899999999999998776631111 1000112234667777799997777666654
No 436
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.71 E-value=0.02 Score=55.19 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCC
Q 006588 33 VGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGS 112 (639)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 112 (639)
+..+..++..+.+.. .+++-++.+||.+|+||...++.++++....+.-. .+.......+.-+
T Consensus 92 ~~Vv~alk~~~~n~~---p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fvat~hFP 154 (344)
T KOG2170|consen 92 QLVVNALKSHWANPN---PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFVATLHFP 154 (344)
T ss_pred HHHHHHHHHHhcCCC---CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhhhhccCC
Confidence 445556666666554 45778999999999999999998887632221110 1122222222222
Q ss_pred CCCcccHHH----HHHHHHHhc-CCceEEEEEeCCCCCCccCchhhhHhhh
Q 006588 113 TSNLDALQS----LLISIDESI-AGKRFLLVLDDVWDGDYIKWEPFYHCLK 158 (639)
Q Consensus 113 ~~~~~~~~~----~~~~l~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~l~ 158 (639)
. ...++. +..+++.-. .-++-|+|+|+++-+...-++.+..++.
T Consensus 155 ~--~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 155 H--ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred C--hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1 122222 222222222 3578999999998876555555555554
No 437
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.71 E-value=0.015 Score=63.91 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=52.8
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
...+++|.++....+...+... +.+.++|++|+|||++|+.+++.. ....|..++++ .....+..+++..
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l-~~~~~~~~~~~-~n~~~~~~~~~~~ 85 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELL-PDEELEDILVY-PNPEDPNMPRIVE 85 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHc-CchhheeEEEE-eCCCCCchHHHHH
Confidence 4456899999999999888632 367799999999999999998732 12233333333 2333456666777
Q ss_pred HHHHccC
Q 006588 105 MLEALTG 111 (639)
Q Consensus 105 il~~l~~ 111 (639)
++..++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 7777653
No 438
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.11 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988865
No 439
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.71 E-value=0.019 Score=55.33 Aligned_cols=52 Identities=21% Similarity=0.087 Sum_probs=28.9
Q ss_pred EEEEEcCCCChHHHHHHHhcChhh-----HHhcCCceEEEEeCCCCchHHHHHHHHH
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDE-----VKRQFDKILWVCVSETFDEFRIAKAMLE 107 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~~~il~ 107 (639)
+.+|+|++|+|||+++..++.... ....-...+-+.+.++..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 799999999999988877766320 1133344444444544444444444444
No 440
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.70 E-value=0.038 Score=46.54 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=34.9
Q ss_pred CCcccchh----hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 27 EEICGRVG----ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 27 ~~~vgR~~----~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.+++|..- .+..|.+.+.... .+.+-++.++|++|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34667664 4455555555432 456789999999999999999888886
No 441
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.69 E-value=0.019 Score=61.91 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+++|....++++.+.+..... ...-|.|+|++|+||+.+|+.+.+
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~ 264 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHR 264 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999998865543 456799999999999999988866
No 442
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.68 E-value=0.038 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+|+|.|++|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 4899999999999999988773
No 443
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.66 E-value=0.045 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|+|||||++.++..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5679999999999999999988764
No 444
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.62 E-value=0.013 Score=56.03 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998766
No 445
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.62 E-value=0.017 Score=56.80 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=39.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHH
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLE 107 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 107 (639)
+..+++.|+|.+|+|||+++.+++. ....+...++||+.... ..++...+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 3678999999999999999999988 45555788999988764 3344443333
No 446
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.012 Score=50.41 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=40.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
..-|.|+|.||+||||+|.+++.. ...-|+++++-....+++...=+.... ..-+.+.+.+.+...+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~-------~~~~~i~isd~vkEn~l~~gyDE~y~c---~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK-------TGLEYIEISDLVKENNLYEGYDEEYKC---HILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH-------hCCceEehhhHHhhhcchhcccccccC---ccccHHHHHHHHHHHHhcC
Confidence 456899999999999999888651 134567776544444443333222221 2234455555555554443
No 447
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.60 E-value=0.029 Score=54.97 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC-------cccHHHHH
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN-------LDALQSLL 123 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-------~~~~~~~~ 123 (639)
..+..++.|.|.+|+|||||+..+... ..... .++.+ ..+..+..+ ...+...+.+... -.+.....
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHH
Confidence 357899999999999999999988773 33333 22222 222222222 2223443322100 01223334
Q ss_pred HHHHHhcCCceEEEEEeCCCC
Q 006588 124 ISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 124 ~~l~~~l~~~~~LlvlDd~~~ 144 (639)
..+........-++|++++.+
T Consensus 175 ~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHhhcCCcEEEEECCCC
Confidence 444444334446889999865
No 448
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.60 E-value=0.079 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|.|||||.+.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999888653
No 449
>PRK06762 hypothetical protein; Provisional
Probab=95.60 E-value=0.0082 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+.+|+|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998876
No 450
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.59 E-value=0.019 Score=53.09 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+++|.+.....|.-+.. +.+-+.+.|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 467888877777777665 346899999999999999988744
No 451
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.59 E-value=0.033 Score=57.08 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=57.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAG 132 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 132 (639)
..+.+.|.|++|+||||+++.+... ........++. +.+..... ... ...+................+...++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRN-KRSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccC-ccceEEccccCCCCcCHHHHHHHhhcc
Confidence 3478999999999999999988763 33333334333 22221111 000 000000000011112344556667778
Q ss_pred ceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 133 KRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 133 ~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
.+=+|++|++.+.. .+... +.....|..++.|...
T Consensus 195 ~pd~i~vgEird~~--~~~~~---l~aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 195 DPDVILIGEMRDLE--TVELA---LTAAETGHLVFGTLHT 229 (343)
T ss_pred CCCEEEEeCCCCHH--HHHHH---HHHHHcCCcEEEEEcC
Confidence 88899999996542 22222 2233456666666554
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.06 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+++|.|+.|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999988875
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.58 E-value=0.05 Score=57.52 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..+++++.|+.|+||||++..++...........+..+.... ..+..+.+..+.+.++.......+..+....+. .++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hcc
Confidence 357999999999999999999987432222122466666554 234556666666666554321112222222222 233
Q ss_pred CceEEEEEeCCC
Q 006588 132 GKRFLLVLDDVW 143 (639)
Q Consensus 132 ~~~~LlvlDd~~ 143 (639)
++ -.+++|-..
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 33 477788764
No 454
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.58 E-value=0.069 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
++++|.|+.|.|||||.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988865
No 455
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.58 E-value=0.059 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 567999999999999999988866
No 456
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.57 E-value=0.057 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||.+.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999988765
No 457
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.57 E-value=0.062 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|+|||||++.++..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999988763
No 458
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.054 Score=52.66 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|+|||||++.++..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988774
No 459
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.56 E-value=0.015 Score=51.61 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 33 VGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.+.+++|.+.+. + +++++.|.+|+|||||++.+..+
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 467888888885 2 78999999999999999988774
No 460
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.52 E-value=0.011 Score=56.06 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....+|+|.|++|+||||||+.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999988763
No 461
>PRK06217 hypothetical protein; Validated
Probab=95.51 E-value=0.037 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.|+|.|.+|+||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988773
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.067 Score=59.53 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=55.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..+++++.|+.|+||||++..++...........+..++... .....+.+....+.++.+.....+..++.+.+.. ++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 357999999999999999999887432221123566666543 2345567777777776554323344455554543 34
Q ss_pred CceEEEEEeCCC
Q 006588 132 GKRFLLVLDDVW 143 (639)
Q Consensus 132 ~~~~LlvlDd~~ 143 (639)
+. =++++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 377788764
No 463
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0023 Score=60.56 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=60.3
Q ss_pred HhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch--hhhcCCCccEEecCCCCCccccchh-----hh
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE--ALCELYNLEKLDICSCSCLKELPEG-----IG 510 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~-----~~ 510 (639)
...|+.|++|.||-|.+.. +. .+..|..|+.|+|+.|.|..+-+ -+.++++|+.|.|..|...+.-++. +.
T Consensus 37 c~kMp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 5678899999999988433 32 26678889999999998886644 3568889999999888877665543 56
Q ss_pred hcccCceee
Q 006588 511 KLINMKYLL 519 (639)
Q Consensus 511 ~l~~L~~L~ 519 (639)
-||+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 678888875
No 464
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.48 E-value=0.03 Score=60.47 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
..++|+...+.++.+.+..... ....|.|.|.+|+|||++|+.+.+. ....-...+-++|... +...+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~--s~~~~~~~i~i~c~~~-~~~~~~---- 206 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRH--SPRAKAPFIALNMAAI-PKDLIE---- 206 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhc--CCCCCCCeEeeeCCCC-CHHHHH----
Confidence 4699999999888888765443 4567999999999999999887663 1111223445565543 111121
Q ss_pred HHccCCCCCcc-cHHH-HHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 107 EALTGSTSNLD-ALQS-LLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 107 ~~l~~~~~~~~-~~~~-~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
..+.+...+.. .... ....+.. .... -|+||+++.........+...+.... ..++||+||..
T Consensus 207 ~~lfg~~~g~~~~~~~~~~g~~~~--a~~G-tl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 207 SELFGHEKGAFTGANTIRQGRFEQ--ADGG-TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred HHhcCCCCCCCCCCCcCCCCCeeE--CCCC-EEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 12222111100 0000 0000100 1122 46889998876555566766665421 13478888864
No 465
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.099 Score=50.52 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=32.1
Q ss_pred HHHhcCCceEEEEEeCCCCC-CccCchhhhHhhhcCCCCcEEEEEccchHHHh
Q 006588 126 IDESIAGKRFLLVLDDVWDG-DYIKWEPFYHCLKKGLHGSKILITTRNESIAS 177 (639)
Q Consensus 126 l~~~l~~~~~LlvlDd~~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 177 (639)
+...+-.++-++++|+.... +......+...+.....+..||++|.+.....
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 44455667789999987542 33334455555554433667888888766554
No 466
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.46 E-value=0.067 Score=53.87 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=48.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc-hHHHHHHHHHHccCCC----CCcccHHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD-EFRIAKAMLEALTGST----SNLDALQSLLISID 127 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~----~~~~~~~~~~~~l~ 127 (639)
+..++++.|++|+||||++..++... ...-..|..+++..... ..+.+.......+... ....+.....+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l--~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY--KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999998843 33323455565543221 1122233333333221 11112222233343
Q ss_pred HhcCCceEEEEEeCCCCC
Q 006588 128 ESIAGKRFLLVLDDVWDG 145 (639)
Q Consensus 128 ~~l~~~~~LlvlDd~~~~ 145 (639)
......-=++|+|-....
T Consensus 191 ~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 333344448888977543
No 467
>PTZ00301 uridine kinase; Provisional
Probab=95.44 E-value=0.011 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+|+|.|++|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999988876
No 468
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.43 E-value=0.062 Score=50.64 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=50.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC-CchHHHHHHHHHHc-------cCCCCCccc-------
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET-FDEFRIAKAMLEAL-------TGSTSNLDA------- 118 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l-------~~~~~~~~~------- 118 (639)
...++|.|++|+|||+|+..+++.. .-+.++++-+.+. ....++..++...- .....+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3678999999999999999887742 2234577777654 45556666664431 111111111
Q ss_pred --HHHHHHHHHHhcCCceEEEEEeCC
Q 006588 119 --LQSLLISIDESIAGKRFLLVLDDV 142 (639)
Q Consensus 119 --~~~~~~~l~~~l~~~~~LlvlDd~ 142 (639)
.-...+.++. .++++|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 1112222333 689999999998
No 469
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.066 Score=51.26 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=47.0
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF 84 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f 84 (639)
.+|.-.-.+.=|-+..+++|.+..+-+..|. -+.++-|.+||.+|.|||-||+++++ ....-|
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc--ccchhh
Confidence 3344444457788999999999877555432 35677899999999999999999999 455444
No 470
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.022 Score=55.03 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=25.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF 84 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f 84 (639)
+.++.++|||++|.|||-+|+.++. ....+|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 4678999999999999999999988 444444
No 471
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.42 E-value=0.088 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||.+.++.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999998876
No 472
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.39 E-value=0.083 Score=57.97 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+....++|.|++|+|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999988865
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.083 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999998875
No 474
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.38 E-value=0.02 Score=55.83 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+|++.|.+|+||||+|+.++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 475
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.38 E-value=0.17 Score=48.98 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988865
No 476
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.37 E-value=0.15 Score=51.55 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=25.4
Q ss_pred EEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 57 ISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
+++.|++|+||||+++.+.+..... .-..+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~-~g~~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRE-RGWAVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhc-cCCeEEEEcccc
Confidence 6899999999999999888742211 222455665544
No 477
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.37 E-value=0.069 Score=50.67 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|.|||||.+.++..
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988763
No 478
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.36 E-value=0.061 Score=56.13 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHcc-----CCCCCcccH--------
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALT-----GSTSNLDAL-------- 119 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-----~~~~~~~~~-------- 119 (639)
....++|.|++|+|||||++.++.. ......++++.-....+..++....+.... ...+.+.+.
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4567999999999999999887763 112234555443344455555444443321 111112211
Q ss_pred --HHHHHHHHHhcCCceEEEEEeCCC
Q 006588 120 --QSLLISIDESIAGKRFLLVLDDVW 143 (639)
Q Consensus 120 --~~~~~~l~~~l~~~~~LlvlDd~~ 143 (639)
-...+.++. .++++|+++|++.
T Consensus 241 ~a~~iAEyfrd--~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRD--RGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHH--cCCCEEEeccchH
Confidence 112222332 4789999999983
No 479
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.34 E-value=0.014 Score=58.99 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=37.4
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+.+-..++|.++.+..+.-.+.. .+.+-+.+.|++|+||||+|+.+..
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 44556789999999988865531 2345699999999999999998866
No 480
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.32 E-value=0.066 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999988876
No 481
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.19 Score=53.87 Aligned_cols=179 Identities=13% Similarity=0.057 Sum_probs=100.5
Q ss_pred CCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
..+-|-...+..++.+..-+..+. .+.++-+.+||++|+|||-+++++++. ...++ +.++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e--~~a~~---~~i~~------- 251 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANE--YGAFL---FLING------- 251 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHH--hCcee---Eeccc-------
Confidence 456666777777776654332211 356788999999999999999999883 33211 11111
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc-eEEEEEeCCCCCCc------c-C---chhhhHhhhcCC--CCcEE
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGK-RFLLVLDDVWDGDY------I-K---WEPFYHCLKKGL--HGSKI 166 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~------~-~---~~~l~~~l~~~~--~~~~i 166 (639)
.+++..+.+. ....+...+.+..+.+ |.++.+|+++..-. . + -.+++..+...+ .+..+
T Consensus 252 ---peli~k~~gE-----te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~viv 323 (693)
T KOG0730|consen 252 ---PELISKFPGE-----TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIV 323 (693)
T ss_pred ---HHHHHhcccc-----hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEE
Confidence 1334444322 2334455566666777 99999998865321 0 1 122333333333 23334
Q ss_pred EEEccchHHH---hh-hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 167 LITTRNESIA---SM-MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 167 lvTsr~~~~~---~~-~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
|-+|+.+... .. ....+.+.+.-.+...-.+++......-+.. .... ...++..+.|+-
T Consensus 324 l~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~----l~~iA~~thGyv 386 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVD----LEDIAVSTHGYV 386 (693)
T ss_pred EEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhh----HHHHHHHccchh
Confidence 4455544311 11 1235567777778777777777765433332 1122 467777777776
No 482
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.012 Score=51.96 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHhc
Q 006588 56 IISIVGMGGIGKTTLAQLAC 75 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~ 75 (639)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998774
No 483
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.30 E-value=0.12 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...++++.|+.|.|||||.+.++..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999988763
No 484
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.0098 Score=54.50 Aligned_cols=25 Identities=48% Similarity=0.567 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+|+|-||-|+||||||+.++++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHH
Confidence 3578999999999999999988774
No 485
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.25 E-value=0.063 Score=50.95 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=50.4
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEE-------eCCCCchHH--HHHHHHHHccCCCCCc-----
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVC-------VSETFDEFR--IAKAMLEALTGSTSNL----- 116 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-------~~~~~~~~~--~~~~il~~l~~~~~~~----- 116 (639)
.+.+.++.+.||+|+||||...++..+...+....+++-++ ..-+.++++ -+++..++......+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45678999999999999999999887533333334443221 111223332 3456666654332221
Q ss_pred ----ccHHHHHHHHHHhcCCceEEEEEeC
Q 006588 117 ----DALQSLLISIDESIAGKRFLLVLDD 141 (639)
Q Consensus 117 ----~~~~~~~~~l~~~l~~~~~LlvlDd 141 (639)
...++.+..+.+....-.++| +|-
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~l-iDT 123 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVL-IDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEE-EcC
Confidence 235666666666544444544 443
No 486
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.25 E-value=0.03 Score=50.60 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHhcC
Q 006588 57 ISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 57 v~i~G~~GiGKTtLa~~~~~ 76 (639)
++|.|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876
No 487
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.0083 Score=33.62 Aligned_cols=17 Identities=41% Similarity=0.925 Sum_probs=7.5
Q ss_pred CcEEeccCCCCcccchh
Q 006588 468 LRYLNLSGQKIEKLPEA 484 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~ 484 (639)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 488
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.22 E-value=0.029 Score=57.67 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCCcccchhhHHHHHHHHhcc------CCcCC--CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 25 DEEEICGRVGERNALVSMLLCE------SSEQQ--KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~------~~~~~--~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.+..++|.++....+..++... ..... -..+.+.+.|++|+|||++|+.++..
T Consensus 13 Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 13 LDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred hccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999888541 00000 12468999999999999999988773
No 489
>PRK04040 adenylate kinase; Provisional
Probab=95.20 E-value=0.013 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+|+|+|++|+||||+++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998877
No 490
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.20 E-value=0.12 Score=57.45 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...++|.|++|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 557899999999999999988865
No 491
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.19 E-value=0.13 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....++|.|++|.|||||++.++..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999888663
No 492
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.19 E-value=0.014 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+++++.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998866
No 493
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.18 E-value=0.012 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...|.|.|++|+||||+|+.+++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998877
No 494
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.17 E-value=0.091 Score=56.61 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=72.6
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
..++|......++.+.+..... ....+.|.|.+|+||+++|+.+... ........+-+++... ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~--~~~~~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRH--SPRANGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHh--CCCCCCCeEEEeCCCC--CHHHHHHHh
Confidence 3588888888888777765432 4456899999999999999877652 1112233444555443 223333222
Q ss_pred HHccCCCCCcc-cHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 107 EALTGSTSNLD-ALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 107 ~~l~~~~~~~~-~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
++....... ........+ .....-.|+||+++.........+...+.... ..++||+||..
T Consensus 206 --fg~~~~~~~~~~~~~~g~~---~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 206 --FGHEKGAFTGANTRRQGRF---EQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred --cCCCCCCCCCcccCCCCcE---EECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCC
Confidence 221110000 000000001 11123348899998876555566666665421 24578888764
No 495
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.16 E-value=0.12 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|.|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999988774
No 496
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.15 E-value=0.14 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998875
No 497
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.085 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||.+.++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998865
No 498
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.14 E-value=0.11 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.|+.|+|||||++.+..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 567899999999999999987754
No 499
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.14 E-value=0.13 Score=48.37 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHhcCCceEEEEEeCCCCC-CccCch-hhhHhhhcCCC--CcEEEEEccchHHHh
Q 006588 126 IDESIAGKRFLLVLDDVWDG-DYIKWE-PFYHCLKKGLH--GSKILITTRNESIAS 177 (639)
Q Consensus 126 l~~~l~~~~~LlvlDd~~~~-~~~~~~-~l~~~l~~~~~--~~~ilvTsr~~~~~~ 177 (639)
+...+..++-++++|+.... +..... .+...+..... +..||++|.+.+...
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 44455677889999998543 222334 45555544332 556888888876554
No 500
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.13 E-value=0.1 Score=53.76 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=31.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
.+++|.|.||+|||.||..++.+.........+.+++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 57999999999999999999885322455566777766543
Done!